Citrus Sinensis ID: 014880
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 416 | 2.2.26 [Sep-21-2011] | |||||||
| Q6NUT3 | 480 | Major facilitator superfa | yes | no | 0.942 | 0.816 | 0.313 | 9e-52 | |
| Q3U481 | 476 | Major facilitator superfa | yes | no | 0.951 | 0.831 | 0.324 | 3e-51 | |
| P94488 | 463 | Uncharacterized symporter | yes | no | 0.480 | 0.431 | 0.263 | 1e-05 | |
| P74168 | 544 | Uncharacterized symporter | N/A | no | 0.343 | 0.262 | 0.290 | 0.0005 |
| >sp|Q6NUT3|MFS12_HUMAN Major facilitator superfamily domain-containing protein 12 OS=Homo sapiens GN=MFSD12 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 204 bits (520), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 134/427 (31%), Positives = 221/427 (51%), Gaps = 35/427 (8%)
Query: 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFAT 76
+P+ + L Y GH LND+ A+ WFTYLLL+L + S RGA ++L GQ+ADG T
Sbjct: 14 PRPLSLVARLSYAVGHFLNDLCASMWFTYLLLYLHSVRAYSSRGAGLLLLLGQVADGLCT 73
Query: 77 IFIGELIDR-------FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISY 129
+G DR +G K WH G+V V +SF +F C+ C + + + Y
Sbjct: 74 PLVGYEADRAASCCARYGPRKAWHLVGTVCVLLSFPFIFSPCLGCG--AATPEWAALLYY 131
Query: 130 CVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189
F IF GWA+TQ++H+S++ + N +V LT+ R AFT+VAN+++Y A+++ +
Sbjct: 132 GPFIVIFQFGWASTQISHLSLIPELVTNDHEKVELTALRYAFTVVANITVYGAAWLLLHL 191
Query: 190 ---STAKTHADLE--NQ--------YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGN 236
S + D+ +Q +R ++ + +G F +F T E R
Sbjct: 192 QGSSRVEPTQDISISDQLGGQDVPVFRNLSLLVVGVGAVFSLLFHLGTRERRRPHAEEPG 251
Query: 237 SHARIS----------WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS 286
H + W +W ++ +YQV ++YM TRL+VN+SQ Y+A Y+ L + +
Sbjct: 252 EHTPLLAPATAQPLLLWKHWLREPAFYQVGILYMTTRLIVNLSQTYMAMYLTYSLHLPKK 311
Query: 287 AKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMY 346
A +P ++Y+ F+ S L++ + R Y+S G+L + A + L + +Y
Sbjct: 312 FIATIPLVMYLSGFLSSFLMKPINKCIGRNMTYFS--GLLVILAFAAWVALAEGLGVAVY 369
Query: 347 VLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406
A+ +G A ++VT ++M L+G + AFV G++SFLDK++ G+AV +QS
Sbjct: 370 AAAVLLGAGCATILVTSLAMTADLIGPHTNSGAFVYGSMSFLDKVANGLAVMAIQSLHPC 429
Query: 407 LCRLCFK 413
LC +
Sbjct: 430 PSELCCR 436
|
Homo sapiens (taxid: 9606) |
| >sp|Q3U481|MFS12_MOUSE Major facilitator superfamily domain-containing protein 12 OS=Mus musculus GN=Mfsd12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 202 bits (515), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 140/431 (32%), Positives = 221/431 (51%), Gaps = 35/431 (8%)
Query: 12 ENDDSFTQPVGRWSV---LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLS 67
+DD+ P S+ L + GH LND+ A WFTYLLLFL + G S RGA ++L
Sbjct: 4 PSDDAGPGPPRTLSLAARLSFAVGHFLNDLCAGMWFTYLLLFLHSVRGYSSRGAGLLLLL 63
Query: 68 GQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122
GQ+ADG T +G DR G K WH AG+V V +SF +F C+ C +
Sbjct: 64 GQVADGLCTPLVGYEADRASCVRCGPRKAWHLAGTVCVLLSFPFIFSPCLGCG--EATPE 121
Query: 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182
+ Y F +F GWAATQ+AH+S++ + + +V LT+ R AFT+VAN+++Y
Sbjct: 122 WAALLYYGPFIVVFQFGWAATQIAHLSLIPELVTSDHEKVELTALRYAFTVVANITVYGA 181
Query: 183 AFIVFSVS-TAKTHADLE--NQ--------YRWIAYSSIFIGCCFVGIFLSRTEEPRLKM 231
A+++ + +A D+ +Q +R +A + +G F +F T+E
Sbjct: 182 AWLLLHLQGSAHGEQDISVGDQLGVQDVPVFRNLALLVVGVGAIFSLLFHLGTKEGHRSQ 241
Query: 232 --GLRGNSHARIS---------WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND 280
G N H + W +W ++ +YQV ++YM TRL+VN+SQ Y+A Y+
Sbjct: 242 HWGNEPNEHTPLVAPAAQPLLLWKHWLREPAFYQVGMLYMTTRLIVNLSQTYIAMYLTYS 301
Query: 281 LRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMN 340
L + + A +P ++Y+ F S L++ + R Y++ G+L + A + L N
Sbjct: 302 LSLPKKFIATIPLVMYLSGFFSSFLMKPVNRRIGRNMTYFT--GLLVILAFAAWVALADN 359
Query: 341 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVL 400
+ +Y A+ +G A ++VT ++M L+G AFV G +SF DK++ G+AV +
Sbjct: 360 LGVAVYGAAVLLGAGCATILVTSLAMTADLIGPHTHSGAFVYGAMSFSDKVANGLAVMAV 419
Query: 401 QSYQSKLCRLC 411
QS LC
Sbjct: 420 QSLHPCPSELC 430
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Mus musculus (taxid: 10090) |
| >sp|P94488|YNAJ_BACSU Uncharacterized symporter YnaJ OS=Bacillus subtilis (strain 168) GN=ynaJ PE=3 SV=2 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 99/235 (42%), Gaps = 35/235 (14%)
Query: 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID--- 84
Y SG ++ A TYLL F TD+ GLS A + L +I D A FIG ++D
Sbjct: 17 YASGDFACNLIYATVSTYLLFFYTDVFGLSAAAAGTMFLVVRIIDALADPFIGTIVDRTN 76
Query: 85 -RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST---STLKVETISYCVFAAIFNVGW 140
RFG F+ + + G P IL+ +T + ++A I VG
Sbjct: 77 SRFGRFRPY--------------LLFGAFPFVILAILCFTTPDFSDMGKLIYAYITYVGL 122
Query: 141 AAT----QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 196
+ T V + ++ + +T N+ V +TS R F ANL +AF V ++ +
Sbjct: 123 SLTYTTINVPYGALTSAMTRNNQEVVSITSVRMLF---ANLGGLVVAFFVPLLAAYLSDT 179
Query: 197 DLENQYRWIAYSSIF--IGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKK 249
W I IG C + IF ++ + R+ + S +I + F++
Sbjct: 180 SGNESLGWQLTMGILGMIGGCLL-IFCFKSTKERVTL---QKSEEKIKFTDIFEQ 230
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Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P74168|Y1374_SYNY3 Uncharacterized symporter sll1374 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1374 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 12/155 (7%)
Query: 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID- 84
L YG+G ITA YLL FLTD+ G+ A +V++ G+I D IG L D
Sbjct: 16 LAYGAGDFGPAITANILVFYLLFFLTDVAGIPAALAGSVLMIGKIFDAINDPIIGLLSDR 75
Query: 85 ---RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE---TISYCVFAAIFNV 138
R+G W G + A+ +++ + +P S L + I Y A FN+
Sbjct: 76 TRSRWGRRLPWMLGGMIPFALFYTAQW--LIPH--FSDDRLTNQWGLFIYYVAIAMAFNL 131
Query: 139 GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM 173
+ + + ++ +T N R L S R AF++
Sbjct: 132 CYTTVNLPYTALTPELTQNYNERTRLNSFRFAFSI 166
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Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 416 | ||||||
| 255542273 | 454 | conserved hypothetical protein [Ricinus | 0.959 | 0.878 | 0.776 | 0.0 | |
| 224106589 | 442 | predicted protein [Populus trichocarpa] | 0.951 | 0.895 | 0.775 | 0.0 | |
| 356557090 | 452 | PREDICTED: uncharacterized MFS-type tran | 0.959 | 0.882 | 0.766 | 0.0 | |
| 224120942 | 457 | predicted protein [Populus trichocarpa] | 0.961 | 0.875 | 0.761 | 0.0 | |
| 356525698 | 452 | PREDICTED: uncharacterized MFS-type tran | 0.959 | 0.882 | 0.759 | 0.0 | |
| 357451101 | 453 | MFS-type transporter, putative [Medicago | 0.961 | 0.883 | 0.755 | 0.0 | |
| 255646539 | 452 | unknown [Glycine max] | 0.971 | 0.893 | 0.747 | 0.0 | |
| 359487445 | 453 | PREDICTED: uncharacterized MFS-type tran | 0.944 | 0.867 | 0.760 | 1e-180 | |
| 297820866 | 459 | AT3g60070/T2O9_50 [Arabidopsis lyrata su | 0.971 | 0.880 | 0.727 | 1e-179 | |
| 240255671 | 458 | major facilitator protein [Arabidopsis t | 0.971 | 0.882 | 0.727 | 1e-179 |
| >gi|255542273|ref|XP_002512200.1| conserved hypothetical protein [Ricinus communis] gi|223548744|gb|EEF50234.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/399 (77%), Positives = 358/399 (89%)
Query: 7 MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
M DIE+D+S+ +PVGRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AA VML
Sbjct: 1 MGDDIEDDNSYPKPVGRWPVFYYGVGHMLNDITAACWFTYLLLFLTDIGLSPRDAATVML 60
Query: 67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
SGQIADGFATIF GELIDRFGHFK+WHGAGSVLVA+SFSSVFGGC PC+IL T++ +ET
Sbjct: 61 SGQIADGFATIFAGELIDRFGHFKVWHGAGSVLVAISFSSVFGGCFPCKILGTNSSTIET 120
Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
+SY +FAAIFNVGWAATQV+HMSMVNCI+LNSTSRVV+ SCRNAFTMVANLSLYAIA +
Sbjct: 121 VSYSIFAAIFNVGWAATQVSHMSMVNCISLNSTSRVVMASCRNAFTMVANLSLYAIALTI 180
Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
F+VS A+THAD++NQYRWIAY SI GCCFVGIF T+EPRLK+ L S ARISW YW
Sbjct: 181 FNVSKAETHADIQNQYRWIAYLSICFGCCFVGIFHLGTKEPRLKISLHEISCARISWTYW 240
Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
FKKILYYQV LVY+LTRLV NVSQAYLAFYVINDLRM QSAKALVPAIIYI SF++S+++
Sbjct: 241 FKKILYYQVGLVYVLTRLVQNVSQAYLAFYVINDLRMAQSAKALVPAIIYISSFVISVIM 300
Query: 307 QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISM 366
QE++WTGQRLKAYYSAGG+LW+FCGA IL+LP +MSAFMY+++IF+GI NALM VTG+SM
Sbjct: 301 QEISWTGQRLKAYYSAGGILWMFCGASILLLPRSMSAFMYIISIFIGIGNALMTVTGVSM 360
Query: 367 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405
++VLVG DL+GCAFVCG+L FLDK+SCG+A+Y LQS+Q+
Sbjct: 361 ESVLVGSDLNGCAFVCGSLGFLDKISCGLALYALQSFQT 399
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106589|ref|XP_002314218.1| predicted protein [Populus trichocarpa] gi|222850626|gb|EEE88173.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/396 (77%), Positives = 354/396 (89%)
Query: 10 DIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQ 69
D+E+DDS +PVGR SV YYG GHMLNDITAACWFTYLLLFLT+IGLSPR AA VML+GQ
Sbjct: 4 DVEDDDSCPKPVGRSSVFYYGVGHMLNDITAACWFTYLLLFLTEIGLSPRDAAIVMLAGQ 63
Query: 70 IADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISY 129
IADGFAT+F GELIDRFGHFKIWHGAGS+L A+SFSSVFGGC+PC+IL++S+ +ETISY
Sbjct: 64 IADGFATVFAGELIDRFGHFKIWHGAGSILAAISFSSVFGGCLPCKILASSSPIIETISY 123
Query: 130 CVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189
AAIFNVGWAATQV+HMSMVNCI+LNSTSRVV+TSCRNAFTMVANLSLYA+A +VFS
Sbjct: 124 STSAAIFNVGWAATQVSHMSMVNCISLNSTSRVVMTSCRNAFTMVANLSLYAVALVVFST 183
Query: 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKK 249
+ A TH+D+ENQY WIAY+SIFIGCCFVGIF T+EPRLK+ + G S+ARISWAYWFKK
Sbjct: 184 TKATTHSDIENQYHWIAYTSIFIGCCFVGIFHLGTKEPRLKIRVHGTSYARISWAYWFKK 243
Query: 250 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM 309
+LYYQV LVYMLTRL NVSQAYLAFYVI D+RM +SAKALVPAIIYI SFIVSI++QEM
Sbjct: 244 VLYYQVGLVYMLTRLAQNVSQAYLAFYVIEDMRMAKSAKALVPAIIYISSFIVSIIMQEM 303
Query: 310 AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNV 369
WTGQRLKAYY AGGVLWVFCGA IL LP ++SAFMYV+++F+G+AN LM +TG+SMQ+V
Sbjct: 304 YWTGQRLKAYYCAGGVLWVFCGASILFLPRSLSAFMYVISVFIGVANTLMTITGVSMQSV 363
Query: 370 LVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405
LVG DL GCAFV G+LSFLDK+SCG+AV+VLQS+Q
Sbjct: 364 LVGSDLDGCAFVYGSLSFLDKVSCGLAVFVLQSFQK 399
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356557090|ref|XP_003546851.1| PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/399 (76%), Positives = 357/399 (89%)
Query: 7 MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
M +E DD++T+ +GRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AAAVML
Sbjct: 1 MGTIVEADDTYTKILGRWPVFYYGMGHMLNDITAACWFTYLLLFLTDIGLSPRNAAAVML 60
Query: 67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
SGQ+ADGFATI +GELIDRFGHFKIWHGAGS+LVA+SFSSVFGGC+PC++ S+++ ET
Sbjct: 61 SGQVADGFATILVGELIDRFGHFKIWHGAGSLLVAISFSSVFGGCLPCKLFSSNSCTFET 120
Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
+SY VFAAIFN+GWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYA+A IV
Sbjct: 121 VSYSVFAAIFNLGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAVALIV 180
Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
FSV KTH D+ENQYRWIAY SIFIGCCFVG+FL T+EPRLK+G+ G HARISW YW
Sbjct: 181 FSVINGKTHDDVENQYRWIAYFSIFIGCCFVGVFLLATKEPRLKLGVHGMVHARISWDYW 240
Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
FK+ILYYQVALVY+LTRLV+N+SQAYLAF+VINDL+M QSAKALVPA+IYICSF+VSI L
Sbjct: 241 FKRILYYQVALVYVLTRLVLNISQAYLAFFVINDLQMAQSAKALVPALIYICSFVVSIAL 300
Query: 307 QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISM 366
QE+AWTG+ LKAYYSAG +LW+FCGA IL+L NMS MY++++F+GIANALMMVTG+SM
Sbjct: 301 QEIAWTGRMLKAYYSAGCILWIFCGAVILLLTTNMSYVMYIVSVFIGIANALMMVTGVSM 360
Query: 367 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405
QN L+G +L+GCAFV G+LSFLDK+SCGIA+YVLQS Q+
Sbjct: 361 QNFLIGGNLNGCAFVVGSLSFLDKISCGIALYVLQSNQN 399
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120942|ref|XP_002330864.1| predicted protein [Populus trichocarpa] gi|222872686|gb|EEF09817.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/403 (76%), Positives = 358/403 (88%), Gaps = 3/403 (0%)
Query: 7 MNYDIENDD---SFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAA 63
M D+ENDD S+ +PVGR V YYG GHMLNDITAACWFTYLLLFLT+IGLSPR AA
Sbjct: 1 MRNDVENDDDDDSYPKPVGRRCVFYYGVGHMLNDITAACWFTYLLLFLTEIGLSPRDAAI 60
Query: 64 VMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK 123
ML+GQIADGFAT+F GELIDRFGHFK+WHGAGS+LVA+SFSSVFGGC+PC+IL++ +
Sbjct: 61 AMLAGQIADGFATVFAGELIDRFGHFKVWHGAGSILVAISFSSVFGGCLPCKILASCSSV 120
Query: 124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183
VET+SY AAIFNVGWAATQV+HMSMVNCI+LNS+SRVV+TSCRNAFTMVANLSLYA+A
Sbjct: 121 VETVSYSTSAAIFNVGWAATQVSHMSMVNCISLNSSSRVVMTSCRNAFTMVANLSLYAVA 180
Query: 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISW 243
+VFS A THAD+ENQYRWIAY+SIFIGCCFVGIF T+EPRLK+ + G S+ARISW
Sbjct: 181 LVVFSSIKATTHADIENQYRWIAYTSIFIGCCFVGIFHLGTKEPRLKICVHGTSNARISW 240
Query: 244 AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVS 303
AYWFKK+LYYQV LVYMLTRLV NVSQ YLAFYV++DL+M +SAKALVPAIIY+ SF VS
Sbjct: 241 AYWFKKVLYYQVGLVYMLTRLVQNVSQVYLAFYVMDDLQMAKSAKALVPAIIYMSSFFVS 300
Query: 304 ILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTG 363
+++QEM+WTGQRLKAYYSAGG+LWVFCGAGIL LP NMSAFMYV+++ +GIANALM VTG
Sbjct: 301 VIMQEMSWTGQRLKAYYSAGGILWVFCGAGILFLPRNMSAFMYVISVLIGIANALMTVTG 360
Query: 364 ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406
+SMQ++LVG DL+GCAFV G+LSFLDK+SCG+AV+ LQS+QS
Sbjct: 361 VSMQSILVGSDLNGCAFVYGSLSFLDKISCGLAVFALQSFQSS 403
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525698|ref|XP_003531460.1| PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/399 (75%), Positives = 356/399 (89%)
Query: 7 MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
M +E D+++T+ +GRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AA VML
Sbjct: 1 MGTIVEADNTYTKILGRWPVFYYGMGHMLNDITAACWFTYLLLFLTDIGLSPRNAAVVML 60
Query: 67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
SGQ+ADGF TIF+GELIDRFGHFKIWHGAGS+LVA+SFSSVFGGC+PC++ S+++ ET
Sbjct: 61 SGQVADGFVTIFVGELIDRFGHFKIWHGAGSLLVAISFSSVFGGCLPCKLFSSNSGTFET 120
Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
+SY ++AAIFNVGWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYA+A IV
Sbjct: 121 LSYSMYAAIFNVGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAVALIV 180
Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
FSV KTH D+ENQYRWIAY SIFIGCCFVG+F T+EPRLK+G+ G HARISW YW
Sbjct: 181 FSVINGKTHDDVENQYRWIAYLSIFIGCCFVGVFHLATKEPRLKVGVHGMVHARISWDYW 240
Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
FK+ILYYQVALVY+LTRLV+NVSQAYLAF+VINDL+M QSAKALVPA+IYICSF+VSI L
Sbjct: 241 FKRILYYQVALVYVLTRLVLNVSQAYLAFFVINDLQMAQSAKALVPALIYICSFVVSIAL 300
Query: 307 QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISM 366
QE+AWTG+ LKAYYSAG +LW+FCGA IL+L NMS MY++++F+GIANALMMVTG+SM
Sbjct: 301 QEIAWTGRMLKAYYSAGCILWIFCGAVILLLTTNMSYVMYIVSVFIGIANALMMVTGVSM 360
Query: 367 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405
QN L+GE+L+GCAFV G+LSFLDK+SCG+A+YVLQS Q+
Sbjct: 361 QNFLIGENLNGCAFVVGSLSFLDKISCGLALYVLQSNQN 399
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357451101|ref|XP_003595827.1| MFS-type transporter, putative [Medicago truncatula] gi|124360106|gb|ABN08122.1| C19orf28 protein, related [Medicago truncatula] gi|355484875|gb|AES66078.1| MFS-type transporter, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/400 (75%), Positives = 355/400 (88%)
Query: 6 VMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVM 65
+M IE DD+FT+ +GR + YYG GHMLNDIT+ACWFTYLLLFLTDIG SPR AA VM
Sbjct: 1 MMGTVIEEDDTFTKALGRGPIFYYGMGHMLNDITSACWFTYLLLFLTDIGFSPRNAAIVM 60
Query: 66 LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE 125
LSGQ+AD FAT+F+GELIDRFGHFKIWHGAGS+LVA+SFSSVFGGC+PC I ++ ++ E
Sbjct: 61 LSGQVADAFATVFVGELIDRFGHFKIWHGAGSLLVAISFSSVFGGCLPCTIFTSDSITFE 120
Query: 126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185
T+SY VFAAIFNVGWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYAIA I
Sbjct: 121 TVSYSVFAAIFNVGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAIALI 180
Query: 186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAY 245
VFSV KT+A++ENQYRWIAY SIFIGCCFVGIFL T+EPRL+M + G + RISWAY
Sbjct: 181 VFSVVNGKTYANVENQYRWIAYVSIFIGCCFVGIFLLATKEPRLQMDVHGKARGRISWAY 240
Query: 246 WFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSIL 305
WFK++LYYQVAL+Y+LTRL+VN+SQAYLAFYVINDL+M QSAKALVPAIIYI SFIVSI
Sbjct: 241 WFKRVLYYQVALIYVLTRLIVNISQAYLAFYVINDLQMAQSAKALVPAIIYISSFIVSIA 300
Query: 306 LQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGIS 365
LQE+AWTG+ LKAY+SAG +LW+FCGA I++L +MS MY++++F+GIANALMMVTGIS
Sbjct: 301 LQEIAWTGKLLKAYFSAGSILWIFCGAVIMLLTDHMSYAMYIVSVFIGIANALMMVTGIS 360
Query: 366 MQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405
MQN L+GE+L+GCAFV G+LSFLDKMSCGIA+Y+LQSYQ+
Sbjct: 361 MQNFLIGENLNGCAFVVGSLSFLDKMSCGIALYILQSYQN 400
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255646539|gb|ACU23744.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/404 (74%), Positives = 356/404 (88%)
Query: 7 MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
M +E D+++T+ +GRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AA VML
Sbjct: 1 MGTIVEADNTYTKILGRWPVFYYGMGHMLNDITAACWFTYLLLFLTDIGLSPRNAAVVML 60
Query: 67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
SGQ+ADGF TIF+GELI RFGHFKIWHGAGS+LVA+SFSSVFGGC+PC++ S+++ ET
Sbjct: 61 SGQVADGFVTIFVGELIGRFGHFKIWHGAGSLLVAISFSSVFGGCLPCKLFSSNSGTFET 120
Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
+SY ++AAIFNVGWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYA+A IV
Sbjct: 121 LSYSMYAAIFNVGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAVALIV 180
Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
FSV KTH D+ENQYRWIAY SIFIGCCFVG+F T+EPRLK+G+ G HARISW YW
Sbjct: 181 FSVIIGKTHDDVENQYRWIAYLSIFIGCCFVGVFRLATKEPRLKVGVHGMVHARISWGYW 240
Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
FK+ILYYQVALVY+LTRLV+NVSQAYLAF+VINDL+M QSAKALVPA+IYICSF+VSI L
Sbjct: 241 FKRILYYQVALVYVLTRLVLNVSQAYLAFFVINDLQMAQSAKALVPALIYICSFVVSIAL 300
Query: 307 QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISM 366
QE+AWTG+ LKAYYSAG +LW+FCGA IL+L NMS MY++++F+GIANALMMVTG+SM
Sbjct: 301 QEIAWTGRMLKAYYSAGCILWIFCGAVILLLTTNMSYVMYIVSVFIGIANALMMVTGVSM 360
Query: 367 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSKLCRL 410
QN L+GE+L+GCAFV G+LSFLDK+SCG+A+YV QS Q+ +L
Sbjct: 361 QNFLIGENLNGCAFVVGSLSFLDKISCGLALYVFQSNQNLFPQL 404
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487445|ref|XP_002270525.2| PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Vitis vinifera] gi|297741204|emb|CBI32155.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 299/393 (76%), Positives = 349/393 (88%)
Query: 11 IENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQI 70
+E+DD+FT+P+GR +V YYG GHMLNDIT+ACWFTYLL+FLTDIGL R AA VMLSGQI
Sbjct: 5 MEDDDAFTKPLGRQAVFYYGVGHMLNDITSACWFTYLLVFLTDIGLPSRDAATVMLSGQI 64
Query: 71 ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYC 130
ADGF TIF GELIDRFGHFKIWHGAGS+LVAVSFSSVFGGC+PC+I +++ ++T+ Y
Sbjct: 65 ADGFTTIFAGELIDRFGHFKIWHGAGSILVAVSFSSVFGGCLPCKIFGSNSSTLQTVGYS 124
Query: 131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190
+FAAIFNVGWAATQV+HMSMVNCITLNSTSRVVL SCRNAFTMVANLSLYA+AF+VF+ S
Sbjct: 125 MFAAIFNVGWAATQVSHMSMVNCITLNSTSRVVLASCRNAFTMVANLSLYAVAFVVFNSS 184
Query: 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKI 250
T D+ENQYRWIAY SI IGCCFV IFL T+EPRLK G G +ARI W++WF+K+
Sbjct: 185 KPHTLVDIENQYRWIAYLSIAIGCCFVAIFLLGTKEPRLKKGAHGKGYARILWSHWFRKV 244
Query: 251 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMA 310
LYYQVALVY+LTRLV NVSQA+LAFYVINDL+M QS+KALVPAIIYICSFIVSI+LQE
Sbjct: 245 LYYQVALVYVLTRLVTNVSQAFLAFYVINDLQMSQSSKALVPAIIYICSFIVSIILQEFT 304
Query: 311 WTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVL 370
W+GQRLKA+YSAGG+LW+ CGAGIL LP NM+AFMY+L+I +GIANALMMVTG+SMQ+ L
Sbjct: 305 WSGQRLKAFYSAGGILWIICGAGILFLPRNMNAFMYILSIIIGIANALMMVTGVSMQSFL 364
Query: 371 VGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403
VGEDL GCAFV G+LSFLDK+SCG+A++VL+SY
Sbjct: 365 VGEDLHGCAFVYGSLSFLDKISCGLALFVLESY 397
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820866|ref|XP_002878316.1| AT3g60070/T2O9_50 [Arabidopsis lyrata subsp. lyrata] gi|297324154|gb|EFH54575.1| AT3g60070/T2O9_50 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 294/404 (72%), Positives = 348/404 (86%)
Query: 12 ENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIA 71
+D FT+P+GRWSV +YG GHMLNDITA+CWFTYLLLFLT IGLSPR AA VMLSGQ+A
Sbjct: 5 SEEDPFTKPIGRWSVFFYGVGHMLNDITASCWFTYLLLFLTQIGLSPRDAAIVMLSGQVA 64
Query: 72 DGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCV 131
D FATIF GELIDRFGHFKIWH AGS+LVA+SFSSVFGGC+PC IL +L +ET SY +
Sbjct: 65 DAFATIFTGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSILHNDSLTLETFSYSM 124
Query: 132 FAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191
FAAIFN+GWAATQV+HM+MVNCI+LNSTSRV LTS RNAFTMVANL LYAIA +VF V
Sbjct: 125 FAAIFNIGWAATQVSHMAMVNCISLNSTSRVALTSSRNAFTMVANLGLYAIALVVFGVIK 184
Query: 192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL 251
A + D E QYRWIAYSSI IGCCFV IFL T+EPRL++ L+ S ARI W YWF+K+L
Sbjct: 185 AGSKEDTETQYRWIAYSSITIGCCFVVIFLMGTKEPRLRIDLKQTSRARIPWVYWFRKLL 244
Query: 252 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAW 311
YYQVA+VY+LTRLV+NVSQAYLAF+VI+DL+MGQSAKALVPAIIYICSF+VS+LLQE+ W
Sbjct: 245 YYQVAMVYLLTRLVLNVSQAYLAFFVIDDLQMGQSAKALVPAIIYICSFVVSVLLQEIPW 304
Query: 312 TGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLV 371
G+RLKAYY+AGG++W+FCGA IL+LP ++S+FMY +++F+GIANALMMVT ISMQ+VLV
Sbjct: 305 NGRRLKAYYTAGGIIWIFCGAAILLLPRDISSFMYAISVFIGIANALMMVTAISMQSVLV 364
Query: 372 GEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSKLCRLCFKNT 415
G ++ GCAFVCG+LSFLDKMSCG+A+YVLQS+Q+ R N
Sbjct: 365 GAEVGGCAFVCGSLSFLDKMSCGLALYVLQSHQTTSPRGQLNNN 408
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240255671|ref|NP_191566.5| major facilitator protein [Arabidopsis thaliana] gi|21703097|gb|AAM74491.1| AT3g60070/T2O9_50 [Arabidopsis thaliana] gi|332646487|gb|AEE80008.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust.
Identities = 294/404 (72%), Positives = 347/404 (85%)
Query: 12 ENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIA 71
+D FT+P+GRWSV +YG GHMLNDITA+CWFTYLLLFLT IGLSPR AA VMLSGQ+A
Sbjct: 5 SEEDPFTKPIGRWSVFFYGVGHMLNDITASCWFTYLLLFLTQIGLSPRDAAIVMLSGQVA 64
Query: 72 DGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCV 131
D FATIF GELIDRFGHFKIWH AGS+LVA+SFSSVFGGC+PC IL +L +ET SY +
Sbjct: 65 DAFATIFTGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSILHNDSLTLETFSYSM 124
Query: 132 FAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191
FAAIFN+GWAATQV+HM+MVNCI+LNSTSRV LTS RNAFTMVANL LYAIA +VF V
Sbjct: 125 FAAIFNIGWAATQVSHMAMVNCISLNSTSRVALTSSRNAFTMVANLGLYAIALVVFGVIK 184
Query: 192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL 251
A + D E QYRWIAYSSI IGCCFV IFL T+EPRL++ L+ S ARI W YWF+KIL
Sbjct: 185 AGSKEDTETQYRWIAYSSITIGCCFVVIFLMGTKEPRLRIDLKETSRARIPWVYWFRKIL 244
Query: 252 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAW 311
YYQVA+VY+LTRLV+NVSQAYLAF+VI+DL+M QSAKALVPAIIYICSF+VS+LLQE+ W
Sbjct: 245 YYQVAMVYLLTRLVLNVSQAYLAFFVIDDLQMDQSAKALVPAIIYICSFVVSVLLQEIPW 304
Query: 312 TGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLV 371
G+RLKAYY+AGG++W+FCGA IL+LP ++S+FMY +++F+GIANALMMVT ISMQ+VLV
Sbjct: 305 NGKRLKAYYTAGGIIWIFCGAAILLLPRDISSFMYAISVFIGIANALMMVTAISMQSVLV 364
Query: 372 GEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSKLCRLCFKNT 415
G ++ GCAFVCG+LSFLDKMSCG+A+YVLQS+Q+ R N
Sbjct: 365 GAEVGGCAFVCGSLSFLDKMSCGLALYVLQSHQTTSPRGQLNNN 408
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 416 | ||||||
| TAIR|locus:2050626 | 462 | AT2G44280 "AT2G44280" [Arabido | 0.971 | 0.874 | 0.680 | 1e-155 | |
| TAIR|locus:2101442 | 458 | AT3G60070 "AT3G60070" [Arabido | 0.942 | 0.855 | 0.709 | 1.3e-155 | |
| UNIPROTKB|Q6NUT3 | 480 | MFSD12 "Major facilitator supe | 0.444 | 0.385 | 0.331 | 2.2e-47 | |
| MGI|MGI:3604804 | 476 | Mfsd12 "major facilitator supe | 0.403 | 0.352 | 0.350 | 1.6e-45 | |
| ZFIN|ZDB-GENE-030131-4642 | 507 | mfsd12a "major facilitator sup | 0.475 | 0.390 | 0.331 | 2.8e-43 | |
| WB|WBGene00017530 | 501 | F16H11.1 [Caenorhabditis elega | 0.742 | 0.616 | 0.306 | 8e-37 | |
| TIGR_CMR|CPS_3708 | 442 | CPS_3708 "sugar:cation symport | 0.831 | 0.782 | 0.229 | 4.7e-05 |
| TAIR|locus:2050626 AT2G44280 "AT2G44280" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1518 (539.4 bits), Expect = 1.0e-155, P = 1.0e-155
Identities = 275/404 (68%), Positives = 337/404 (83%)
Query: 1 MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRG 60
MTSS ++ + E +D T+P+GR SV YYG GHMLNDITA+CWFTYLLLFLT IGLSPR
Sbjct: 1 MTSSVIVGMEEEEEDPSTKPLGRLSVFYYGVGHMLNDITASCWFTYLLLFLTQIGLSPRD 60
Query: 61 AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTS 120
AA VMLSGQ+ADGFATIFIGELIDRFGHFKIWH C+PC +L +
Sbjct: 61 AAIVMLSGQVADGFATIFIGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSLLHNN 120
Query: 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY 180
+ +ET+SY +FAAIFN+GWAATQV+HM+MVNCITLNSTSRV LTS RNAF+MVANL LY
Sbjct: 121 SSTIETLSYSMFAAIFNIGWAATQVSHMAMVNCITLNSTSRVALTSSRNAFSMVANLGLY 180
Query: 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR 240
AIA +VF VS A T + E+QYRWIAYSSI +GCCFV IFL T+EPRL++ LR S AR
Sbjct: 181 AIALVVFGVSEAVTKENTESQYRWIAYSSITVGCCFVVIFLMGTKEPRLRINLRETSRAR 240
Query: 241 ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSF 300
I W+YWF+KILYYQVA+VY+LTRLV+NVSQAYLAF+VI+DL+M QSAKAL+PAIIY+CSF
Sbjct: 241 IPWSYWFRKILYYQVAMVYLLTRLVLNVSQAYLAFFVIDDLQMAQSAKALIPAIIYVCSF 300
Query: 301 IVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMM 360
+VS++LQE+ W G+RLKAYY AGG++W+FCG IL+LP +++++MY +++F+GIANA+M+
Sbjct: 301 VVSVMLQEIPWNGKRLKAYYCAGGIIWIFCGISILLLPRSINSYMYAISVFIGIANAVML 360
Query: 361 VTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404
VT ISMQ+VL+G L GCAFVCG+LSFLDKMSCG+A+YVLQS+Q
Sbjct: 361 VTSISMQSVLIGSKLGGCAFVCGSLSFLDKMSCGLALYVLQSHQ 404
|
|
| TAIR|locus:2101442 AT3G60070 "AT3G60070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1517 (539.1 bits), Expect = 1.3e-155, P = 1.3e-155
Identities = 278/392 (70%), Positives = 329/392 (83%)
Query: 14 DDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADG 73
+D FT+P+GRWSV +YG GHMLNDITA+CWFTYLLLFLT IGLSPR AA VMLSGQ+AD
Sbjct: 7 EDPFTKPIGRWSVFFYGVGHMLNDITASCWFTYLLLFLTQIGLSPRDAAIVMLSGQVADA 66
Query: 74 FATIFIGELIDRFGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFA 133
FATIF GELIDRFGHFKIWH C+PC IL +L +ET SY +FA
Sbjct: 67 FATIFTGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSILHNDSLTLETFSYSMFA 126
Query: 134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193
AIFN+GWAATQV+HM+MVNCI+LNSTSRV LTS RNAFTMVANL LYAIA +VF V A
Sbjct: 127 AIFNIGWAATQVSHMAMVNCISLNSTSRVALTSSRNAFTMVANLGLYAIALVVFGVIKAG 186
Query: 194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYY 253
+ D E QYRWIAYSSI IGCCFV IFL T+EPRL++ L+ S ARI W YWF+KILYY
Sbjct: 187 SKEDTETQYRWIAYSSITIGCCFVVIFLMGTKEPRLRIDLKETSRARIPWVYWFRKILYY 246
Query: 254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTG 313
QVA+VY+LTRLV+NVSQAYLAF+VI+DL+M QSAKALVPAIIYICSF+VS+LLQE+ W G
Sbjct: 247 QVAMVYLLTRLVLNVSQAYLAFFVIDDLQMDQSAKALVPAIIYICSFVVSVLLQEIPWNG 306
Query: 314 QRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGE 373
+RLKAYY+AGG++W+FCGA IL+LP ++S+FMY +++F+GIANALMMVT ISMQ+VLVG
Sbjct: 307 KRLKAYYTAGGIIWIFCGAAILLLPRDISSFMYAISVFIGIANALMMVTAISMQSVLVGA 366
Query: 374 DLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405
++ GCAFVCG+LSFLDKMSCG+A+YVLQS+Q+
Sbjct: 367 EVGGCAFVCGSLSFLDKMSCGLALYVLQSHQT 398
|
|
| UNIPROTKB|Q6NUT3 MFSD12 "Major facilitator superfamily domain-containing protein 12" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 275 (101.9 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 64/193 (33%), Positives = 108/193 (55%)
Query: 225 EEPRLKMGLRGNSHAR--ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR 282
EEP L + A+ + W +W ++ +YQV ++YM TRL+VN+SQ Y+A Y+ L
Sbjct: 248 EEPGEHTPLLAPATAQPLLLWKHWLREPAFYQVGILYMTTRLIVNLSQTYMAMYLTYSLH 307
Query: 283 MGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMS 342
+ + A +P ++Y+ F+ S L++ + R Y+S G+L + A + L +
Sbjct: 308 LPKKFIATIPLVMYLSGFLSSFLMKPINKCIGRNMTYFS--GLLVILAFAAWVALAEGLG 365
Query: 343 AFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402
+Y A+ +G A ++VT ++M L+G + AFV G++SFLDK++ G+AV +QS
Sbjct: 366 VAVYAAAVLLGAGCATILVTSLAMTADLIGPHTNSGAFVYGSMSFLDKVANGLAVMAIQS 425
Query: 403 YQ---SKLC-RLC 411
S+LC R C
Sbjct: 426 LHPCPSELCCRAC 438
|
|
| MGI|MGI:3604804 Mfsd12 "major facilitator superfamily domain containing 12" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 275 (101.9 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 62/177 (35%), Positives = 91/177 (51%)
Query: 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR 85
L + GH LND+ A WFTYLLLFL + G S RGA ++L GQ+ADG T +G DR
Sbjct: 22 LSFAVGHFLNDLCAGMWFTYLLLFLHSVRGYSSRGAGLLLLLGQVADGLCTPLVGYEADR 81
Query: 86 F-----GHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFAAIFNVGW 140
G K WH C+ C + + + Y F +F GW
Sbjct: 82 ASCVRCGPRKAWHLAGTVCVLLSFPFIFSPCLGCGEATPEWAAL--LYYGPFIVVFQFGW 139
Query: 141 AATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197
AATQ+AH+S++ + + +V LT+ R AFT+VAN+++Y A+++ + H +
Sbjct: 140 AATQIAHLSLIPELVTSDHEKVELTALRYAFTVVANITVYGAAWLLLHLQ-GSAHGE 195
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| ZFIN|ZDB-GENE-030131-4642 mfsd12a "major facilitator superfamily domain containing 12a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 274 (101.5 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
Identities = 71/214 (33%), Positives = 105/214 (49%)
Query: 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR 85
L Y GH LND+ A+ WFTYLL+F + G A ++L GQIADG T IG DR
Sbjct: 15 LSYSVGHFLNDLCASMWFTYLLVFYHSVLGFENTYAGVLLLVGQIADGVCTPLIGYESDR 74
Query: 86 ------FGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFAAIFNVG 139
+G K WH C+ C L+T V + F IF G
Sbjct: 75 TPGCGSYGKRKTWHLVGTISVLLSFPFIFNQCLGCD-LNTPQW-VSVTYFAPFIIIFQFG 132
Query: 140 WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199
WAATQ++H+S++ + +V LT+ R AFT++AN+++YA+A+++F A ++
Sbjct: 133 WAATQISHLSLIPELVSCEHEKVELTAYRYAFTVIANITVYAVAWLLFHFQEGDDPAVMD 192
Query: 200 NQ-------YRWIAYSSIFIGCCFVGIFLSRTEE 226
N +R ++ + IG F +F T E
Sbjct: 193 NLGSVDIPVFRNLSLIVVGIGAVFTFLFHLGTRE 226
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| WB|WBGene00017530 F16H11.1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 102/333 (30%), Positives = 171/333 (51%)
Query: 84 DRFGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFAAIFNVGWAAT 143
D+ G WH C C+ ++ LKV + + F +F GWA+
Sbjct: 105 DKIGRRMSWHLIGTVLVSLSFPMIFNKCFLCKSTTSEWLKV--LWFVPFIMVFQFGWASV 162
Query: 144 QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY-AIAFIVFSVSTAKTHA---DLE 199
Q++H++++ ++ SR + S R AFT++ANLS+Y A+A+++ S ST T D
Sbjct: 163 QISHLALIPELSSVPASRATMNSLRYAFTVIANLSVYFALAWLL-SESTGHTSIGPWDFS 221
Query: 200 NQYRWIAYSSIFIGCCFVGIFLSRTEEP-RLKMGLRGNSHA-------RISWAYWFKKIL 251
+ +R + + +G +F + T EP + R NS + R+ W WF +
Sbjct: 222 H-FRLAGWLVVVLGITVAFVFYAFTREPTNYRRFSRLNSFSSDASELVRMHWTSWFGHVQ 280
Query: 252 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAW 311
+YQ+AL+YML+RL +N+SQ Y FY+ + A++P + Y+ SF VS++
Sbjct: 281 FYQIALLYMLSRLYINISQVYFPFYITMTQNYEKKYVAILPMVAYLSSFSVSMVNSLPVV 340
Query: 312 TGQRLKAYYSAG---GVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQN 368
+ K YS G G+L C +L LP +Y LA+ +GIA A++++T +S+
Sbjct: 341 SKLSKKILYSFGLASGML--SCAVMMLDLP---GWKIYALAVGIGIAQAILLITSLSITA 395
Query: 369 VLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401
L+ ++ AFV G +SF DK+S GIA +++
Sbjct: 396 DLINKNTESGAFVYGAMSFFDKLSNGIAYQLIE 428
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| TIGR_CMR|CPS_3708 CPS_3708 "sugar:cation symporter family protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 89/387 (22%), Positives = 162/387 (41%)
Query: 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-- 85
YG G ++I +LLLF TD+ GLSP + L ++ D +G L D+
Sbjct: 10 YGLGDTASNIIFQTVMMFLLLFYTDVVGLSPAVVGTMFLFVRLIDAVTDPIMGNLADKTR 69
Query: 86 --FGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFAAIFNVGWAAT 143
+G F+ + P T KV ++ + + + + A
Sbjct: 70 TKWGQFRPYLLWLALPFALISILAFTT--PDL---TGNNKV-IYAFVTYTLLM-IAYTAI 122
Query: 144 QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR 203
+ + + IT ++ RV + S R F M+ + + A A + + QY
Sbjct: 123 NIPYCGLGGVITADAKERVTVQSYRFVFGMLGGV-IVAGATMPMVEWFGQGDTAKGYQYT 181
Query: 204 WIAYSSIFIGC---CFVGIFLSRTEEPRLK-MGLRGNSHARISWAYWFKKILYYQVALVY 259
+A SS+ + CF+G R + P + ++ N + W +IL +A Y
Sbjct: 182 MVAMSSLGVVLFLLCFLGT-KERVKPPENQDSSMKENLQSLWKNDQW--RILC--IASFY 236
Query: 260 MLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAII---YICSFIVSILLQEMAWTGQRL 316
+LT V+ ++ LA Y + +G+ + L+ + + + S I + Q +A ++
Sbjct: 237 LLTGQVLRLT---LAVYYVKYF-LGR--EDLITSFLTLGVVASMIGCAVAQPLAKRVCKI 290
Query: 317 KAYYSAGGVLWVFCGAGILILPMNMS-AFMYVLA--IFVGIANALM---MVTGISMQNVL 370
KAY + + V C A LI P + AF+ ++ F+ +A+ L+ M I +
Sbjct: 291 KAYIALQSLSAVICLASFLISPNQIILAFVAFISWKFFLDMASPLLWAKMADTIDYGHKK 350
Query: 371 VGEDLSGCAFVCGTLSFLDKMSCGIAV 397
G ++G + G + F+ KM GIA+
Sbjct: 351 TGIRVTGLVY-SGVIFFI-KM--GIAI 373
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.330 0.138 0.437 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 416 399 0.00097 117 3 11 22 0.39 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 619 (66 KB)
Total size of DFA: 254 KB (2134 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.42u 0.09s 27.51t Elapsed: 00:00:01
Total cpu time: 27.42u 0.09s 27.51t Elapsed: 00:00:01
Start: Tue May 21 00:06:18 2013 End: Tue May 21 00:06:19 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q3U481 | MFS12_MOUSE | No assigned EC number | 0.3248 | 0.9519 | 0.8319 | yes | no |
| Q6NUT3 | MFS12_HUMAN | No assigned EC number | 0.3138 | 0.9423 | 0.8166 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_IX001320 | hypothetical protein (442 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 416 | |||
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 8e-47 | |
| COG2211 | 467 | COG2211, MelB, Na+/melibiose symporter and related | 2e-16 | |
| TIGR00792 | 437 | TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuron | 1e-08 | |
| PRK09848 | 448 | PRK09848, PRK09848, glucuronide transporter; Provi | 2e-07 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 165 bits (421), Expect = 8e-47
Identities = 83/387 (21%), Positives = 140/387 (36%), Gaps = 26/387 (6%)
Query: 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID- 84
+ YG G + N+I A TYLL F TD+ GLS + L +I D F +G +ID
Sbjct: 2 IGYGLGDLGNNIIYALLSTYLLYFYTDVLGLSAAAVGTIFLVARIWDAFTDPIVGAIIDR 61
Query: 85 ---RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWA 141
R+G F+ W G++ +A+S +F P + T+ L I+Y + + +
Sbjct: 62 TRTRWGKFRPWLLIGAIPLAISLVLLFA--TPFGLSMTAKLIYAFITYI----LLGLAYT 115
Query: 142 ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 201
+ + S++ +T + R L S R + L + IA + ++ +
Sbjct: 116 FVNIPYWSLIPVLTRDPKERTSLASYRRIGATIGGLLVAVIAPPLVALLGGG---NGAKG 172
Query: 202 YRWIAYSSIFIGCCFVGIFLSRT-EEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYM 260
Y A + I + T E + + R + FK + L+Y+
Sbjct: 173 YFLAALIIAILAVVGFLICFAGTKERVSVPPEQKEKVSLRDMFKALFKNRPLLILLLLYL 232
Query: 261 LTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KA 318
L L + V L +Y L L+ + W +R K
Sbjct: 233 LNALAMAVRNGLLLYYFTYVLGNAGLFSVLLLIGTIAAILGAPL----WPWLAKRFGKKR 288
Query: 319 YYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQN--VLVGEDLS 376
+ G +L + LP VL + GI L + +M V GE +
Sbjct: 289 TFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKT 348
Query: 377 G---CAFVCGTLSFLDKMSCGIAVYVL 400
G SF DK+ + ++
Sbjct: 349 GKRREGITFSLYSFADKLGGALGGAIV 375
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This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 71/390 (18%), Positives = 137/390 (35%), Gaps = 34/390 (8%)
Query: 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID--- 84
YG G ++ YLL F TD+ GLS A + L +I D +G ++D
Sbjct: 17 YGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTR 76
Query: 85 -RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAAT 143
R+G F+ W G++ A+ +F I ++ + I V + +G+
Sbjct: 77 SRWGRFRPWLLWGAIPFAIVAVLLF-------ITPDFSMTGKLIYALVTYMLLGLGYTLV 129
Query: 144 QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR 203
+ + ++ IT + R LTS R F + L L A+ F L Y+
Sbjct: 130 NIPYGALGPEITQDPQERASLTSWRMVFASLGGL-LVAVLFPPLVKLFGGGDKAL--GYQ 186
Query: 204 WIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL----YYQVALVY 259
A IG + +E ++ + ++ F I + L+
Sbjct: 187 GTALVLGVIGVILLLFCFFNVKERVVETQ-PTKTGVKLKLKDSFLLIFKNRPLLLLLLMN 245
Query: 260 MLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--K 317
+L + N+ + + +YV L + L+ + ++ ++L ++ K
Sbjct: 246 LLLFIAFNIRGSIMVYYVTYVLGDPELFAYLL-LLASGAGLLIGLIL--WPRLVKKFGKK 302
Query: 318 AYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLV------ 371
+ G +L + P + V I G+ + +M V
Sbjct: 303 KLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWK 362
Query: 372 -GEDLSGCAFVCGTLSFLDKMSCGIAVYVL 400
G G + ++F K+ +A ++
Sbjct: 363 TGVRREGIVY--SGMTFFRKLGLALAGFIP 390
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Length = 467 |
| >gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 78/342 (22%), Positives = 127/342 (37%), Gaps = 38/342 (11%)
Query: 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID--- 84
YG G N+ A TYLL F TD+ GLS + L +I D +G ++D
Sbjct: 4 YGFGDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTR 63
Query: 85 -RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAAT 143
R+G F+ W +L+ S+ +L +T V+A I +
Sbjct: 64 TRWGKFRPW-----LLIGAIPFSIVL------VLLFTTPDFSATGKLVYAYITYILLGLF 112
Query: 144 ----QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199
+ + S+V ITL+ R L++ R A L +A IV + + D +
Sbjct: 113 YSFVNIPYWSLVPAITLDPRERESLSTFRRFG---ATLGGLLVAVIVLPLVSYFGGGDDK 169
Query: 200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL----YYQV 255
+ A IG + I T+E ++ N ++S FK + +
Sbjct: 170 FGWFMFALVLALIGVVSLIICFFGTKERYSEI--PKNIEKKLSLKQIFKALFKNDQLLIL 227
Query: 256 ALVYMLTRLVVNV---SQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWT 312
L Y+ L N+ Q Y YV+ D + + + +I I +L +
Sbjct: 228 CLAYLFYNLAFNIKNGVQVYYFTYVLGDPEL----FSYMGSIAIGAGLIGVLLFPRLVKK 283
Query: 313 GQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGI 354
R K ++ G +L V G I + + VL I G
Sbjct: 284 FGR-KILFAGGILLMV-LGYLIFFFAGSNLPLILVLIILAGF 323
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The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family (TC 2.A.2) GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 437 |
| >gnl|CDD|182109 PRK09848, PRK09848, glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 55/281 (19%), Positives = 112/281 (39%), Gaps = 35/281 (12%)
Query: 19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATI 77
Q + +++ Y G + N+ A +LL + TD+ G+ A ++L ++ D FA +
Sbjct: 3 QQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADV 62
Query: 78 FIGELID----RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA 133
F G ++D R+G F+ + G+ + + VF +P +S + ++Y
Sbjct: 63 FAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVF--WVPTDWSHSSKVVYAYLTY---- 116
Query: 134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193
+ ++ + + S+ +T SR L + R + A+L+ +AF++
Sbjct: 117 MGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAAR---GIAASLTFVCLAFLIGPSIKNS 173
Query: 194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEE--------PRLKMG---LRGNSHARIS 242
+ ++ + Y + G I T E P LK+ L+ N
Sbjct: 174 SPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLKISLQTLKRNR----- 228
Query: 243 WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRM 283
+ AL +++ V+ S + YV+ND +
Sbjct: 229 -----PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGL 264
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Length = 448 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 416 | |||
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 100.0 | |
| PRK11462 | 460 | putative transporter; Provisional | 100.0 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 100.0 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 100.0 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 100.0 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 100.0 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.97 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.96 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.96 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.96 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.96 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.96 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.96 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.96 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.96 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.95 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.95 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.95 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.95 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.95 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.95 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.95 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.95 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.95 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.95 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.95 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.95 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.95 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.95 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.95 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.95 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.95 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.95 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.95 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.95 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.95 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.95 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.95 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.94 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.94 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.94 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.94 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.94 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.94 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.94 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.94 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.94 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.94 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.94 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.94 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.94 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.94 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.93 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.93 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.93 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.93 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.93 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.93 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.93 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.93 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.93 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.93 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.93 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.93 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.93 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.92 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.92 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.92 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.91 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.91 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.91 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.9 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.9 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.9 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.9 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.9 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.9 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.89 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.89 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.89 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 99.88 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.88 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.88 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.88 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.88 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.87 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.87 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.86 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.85 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.84 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.84 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.84 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.83 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.82 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.81 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.79 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.76 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.74 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.73 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.73 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.72 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.7 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.6 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.55 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.53 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.53 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.52 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.52 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.51 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.4 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.36 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.36 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.36 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.3 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.28 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.27 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.26 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.21 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.19 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.19 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.18 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.18 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.16 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.15 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.15 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.15 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.14 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.14 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.14 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.13 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.13 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.13 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.12 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.11 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.11 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.1 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.09 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.08 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.07 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.05 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.05 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.04 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.03 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.99 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.99 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.99 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.98 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.97 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.96 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.95 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.95 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.94 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.92 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.92 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.91 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.91 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.9 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.89 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.89 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.89 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.88 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.87 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.86 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.86 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.85 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.85 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.84 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.83 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.83 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.83 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.83 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.82 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.82 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.82 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.8 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.78 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.76 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.75 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.75 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.75 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.74 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.71 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.69 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.69 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.69 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.68 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.67 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.67 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 98.67 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.65 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.64 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.64 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.64 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.63 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.63 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.62 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.62 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.59 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.58 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.58 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.58 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.55 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.55 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.53 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.52 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.51 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.5 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.49 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.49 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.48 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.47 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.47 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.45 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.42 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.42 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.4 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.31 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.28 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.25 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.21 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.21 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.15 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.13 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.1 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.08 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.01 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.97 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.97 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.93 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.92 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 97.91 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.91 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.84 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.8 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 97.77 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 97.7 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.68 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.59 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.59 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.57 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.52 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.49 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.47 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.42 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.39 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.33 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.16 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.13 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.05 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.04 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.85 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 96.78 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.77 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.52 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.27 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.03 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.97 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.89 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 95.78 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.78 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 95.69 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 94.58 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.28 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 94.11 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 93.91 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 93.67 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 93.37 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 93.37 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 93.02 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 92.24 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 91.19 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 90.79 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 90.6 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 89.17 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 88.56 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 88.48 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 85.09 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 84.94 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 84.37 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 81.73 |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=313.80 Aligned_cols=372 Identities=19% Similarity=0.245 Sum_probs=308.6
Q ss_pred CCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcc----cCCchhh
Q 014880 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIW 92 (416)
Q Consensus 18 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr----~Grrk~~ 92 (416)
+++++++++..|++|+++.++.+.....|+..|++|. |+++..+|.++.+.++.|++.+|+.|.++|| +||||||
T Consensus 6 ~~kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~ 85 (467)
T COG2211 6 SKKLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPW 85 (467)
T ss_pred cCcccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHH
Confidence 4789999999999999999999999999999999998 9999999999999999999999999999995 9999999
Q ss_pred HHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHH
Q 014880 93 HGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT 172 (416)
Q Consensus 93 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~ 172 (416)
++.+.+..++...+.|.+ |. .+...+..+..+.|. +++++++..++|+.++.+++++|++||.+.+++++.+.
T Consensus 86 lL~g~ip~~i~~~l~F~~--p~-~~~~~k~~ya~vtY~----l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~ 158 (467)
T COG2211 86 LLWGAIPFAIVAVLLFIT--PD-FSMTGKLIYALVTYM----LLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFA 158 (467)
T ss_pred HHHHhHHHHHHHHHHHcC--CC-cccCcchHHHHHHHH----HHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHH
Confidence 999998888888787753 41 233455566666666 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccc-c--CCCchHHHHHHHHhh
Q 014880 173 MVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-R--GNSHARISWAYWFKK 249 (416)
Q Consensus 173 ~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~-~--~~~~~~~~~~~l~~~ 249 (416)
.+|.++...+.+++...++.++ ...||+....+.++++.+..+++++.+||+..++++ + .+++.++.+...+||
T Consensus 159 ~~g~~l~~~~~~plv~~~g~~~---~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~N 235 (467)
T COG2211 159 SLGGLLVAVLFPPLVKLFGGGD---KALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKN 235 (467)
T ss_pred HHHHHHHHHHHHHHHHHhCCCc---chhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHcc
Confidence 9999999999999998887533 378999999999999999999999999997654332 1 344556666788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHH
Q 014880 250 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWV 328 (416)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~ 328 (416)
|+++.+++..++...+.+........|.+..+|.+.............+.+++.++.+++ ++++|| +.+.++.++.+
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk--~~~~~~~~~~~ 313 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK--KLFLIGLLLLA 313 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH--HHHHHHHHHHH
Confidence 999988888888878888777788888877778777666555555555556656776666 445554 88888988889
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhh-------hheeeeccccccchhhhhHHHHHHHHHHHHHHHHHh
Q 014880 329 FCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGIS-------MQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (416)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-------~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~ 401 (416)
++.+.+++.+.++.+..++..++.+++.+...+..++ +.+...++|++| ..++.+++.+|+|.++++.+.+
T Consensus 314 i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eG--i~~s~~tF~~K~g~ala~~~~g 391 (467)
T COG2211 314 VGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREG--IVYSGMTFFRKLGLALAGFIPG 391 (467)
T ss_pred HHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchh--hHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888677777777778888888886555554 455556788888 9999999999999999987776
Q ss_pred hh
Q 014880 402 SY 403 (416)
Q Consensus 402 ~~ 403 (416)
..
T Consensus 392 ~~ 393 (467)
T COG2211 392 WI 393 (467)
T ss_pred HH
Confidence 54
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=289.06 Aligned_cols=366 Identities=15% Similarity=0.239 Sum_probs=261.1
Q ss_pred CCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcc----cCCchhh
Q 014880 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIW 92 (416)
Q Consensus 18 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr----~Grrk~~ 92 (416)
++++++++++.|++|++..+..+.....|++.|++|. |+++..+|+++.+..++|++.+|+.|.++|| +||||||
T Consensus 3 ~~~l~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~ 82 (460)
T PRK11462 3 SEVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPW 82 (460)
T ss_pred CCcccHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchh
Confidence 4578999999999999999999999999999999998 9999999999999999999999999999996 8999999
Q ss_pred HHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHH
Q 014880 93 HGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT 172 (416)
Q Consensus 93 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~ 172 (416)
++.+.+...++..+++. .| ..+......+..+.+ .++.++++..++|+.++.+|+++|++||++.++++..+.
T Consensus 83 il~g~i~~~i~~~llf~--~p-~~s~~~~~~y~~~~~----~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~ 155 (460)
T PRK11462 83 VLFGALPFGIVCVLAYS--TP-DLSMNGKMIYAAITY----TLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLA 155 (460)
T ss_pred HhHHHHHHHHHHHHHHh--CC-CCCcchHHHHHHHHH----HHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999888888877774 24 111111122333333 467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHH
Q 014880 173 MVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILY 252 (416)
Q Consensus 173 ~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (416)
.+|..+++.+..++...++.. +...+|+....+.+++++++..+++...||++.++ +++.+.++.++..+|||.+
T Consensus 156 ~iG~~~~~~~~~plv~~~g~~---~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~--~~~~~~~~~l~~~~~Nk~~ 230 (460)
T PRK11462 156 TAGGMLSTVLMMPLVNLIGGD---NKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAP--PTTTSMREDLRDIWQNDQW 230 (460)
T ss_pred HHHHHHHHHHHHHHHHHhCCC---chhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCC--ccCCCHHHHHHHHhCChHH
Confidence 999988888887877766522 23568999888888888888877777778854322 2334467778899999998
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHH
Q 014880 253 YQVALVYMLTRLVVN---VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWV 328 (416)
Q Consensus 253 ~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~ 328 (416)
+.+....++...... ....|+..|. .+... ..+.+.....++++++.++.+++ +|++|| +.+..+..+..
T Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~y~~~y~---~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk--~~~~~~~~~~~ 304 (460)
T PRK11462 231 RIVGLLTIFNILAVCVRGGAMMYYVTWI---LGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCKV--TIFWWTNALLA 304 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhh---cCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHH
Confidence 776655444444433 3445555554 33322 23344555566677777777666 333333 44443333333
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhh-------hheeeeccccccchhhhhHHHHHHHHHHHHHHHHHh
Q 014880 329 FCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGIS-------MQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (416)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-------~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~ 401 (416)
+....+.+.+.++.+..++..++.|++.+...+..++ +.+.+.++|++| ..++..++.+|+|.++++.+.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g--~~~a~~~f~~Klg~alg~~i~g 382 (460)
T PRK11462 305 VISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTG--ISFAGTLFVLKLGLAFGGALIG 382 (460)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3233333444333434444455667666554433333 333345577777 8888889999999988877665
Q ss_pred hh
Q 014880 402 SY 403 (416)
Q Consensus 402 ~~ 403 (416)
.+
T Consensus 383 ~i 384 (460)
T PRK11462 383 WM 384 (460)
T ss_pred HH
Confidence 44
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=286.78 Aligned_cols=370 Identities=19% Similarity=0.212 Sum_probs=266.4
Q ss_pred CCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcc----cCCchhh
Q 014880 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIW 92 (416)
Q Consensus 18 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr----~Grrk~~ 92 (416)
++++++++++.|++|+++.+..+.....+++.|++|. |+|+.++|++.++..+++++.+|+.|.++|| +||||||
T Consensus 3 ~~~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~ 82 (444)
T PRK09669 3 TSQLTTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPY 82 (444)
T ss_pred CCcccHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchh
Confidence 3578999999999999999999999999999999997 9999999999999999999999999999998 8999999
Q ss_pred HHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHH
Q 014880 93 HGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT 172 (416)
Q Consensus 93 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~ 172 (416)
++.+.+...++..+++. .|. .+.....++..+.+ .+++.+++..++|+.++.+|+++|++||++..+++..+.
T Consensus 83 il~~~~~~~i~~~l~f~--~p~-~~~~~~~~~~~~~~----~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~ 155 (444)
T PRK09669 83 LLWFAIPFGVVCLLTFY--TPD-FGATGKIIYACVTY----ILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALS 155 (444)
T ss_pred HHHHHHHHHHHHHHHHh--CCC-CCcchHHHHHHHHH----HHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHH
Confidence 99888888777666553 241 11111122222223 367788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHH
Q 014880 173 MVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILY 252 (416)
Q Consensus 173 ~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (416)
.+|..+++.+..++...++.. +...+|+..+.+.+++.++..+.+++..||++.++ ++++.+.++.+++++|||.+
T Consensus 156 ~~G~~i~~~~~~pl~~~~~~~---~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~n~~~ 231 (444)
T PRK09669 156 FIGGLIVSVIALPLVDILGKG---DEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPE-VDNSSSVWKDLKLLLGNSQW 231 (444)
T ss_pred HHHHHHHHHHHHHHHHHhCCC---chhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCC-CcCCCCHHHHHHHHhCCchH
Confidence 999998888777777766432 23678999999888888877777777777754332 22334457778999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHH
Q 014880 253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG 331 (416)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~ 331 (416)
+.+.+..++............+.|.....+. +...+.+.....+..+++.++.+++ +|++|| +.+.++.+..+++.
T Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~--~~~~~~~~~~~~~~ 308 (444)
T PRK09669 232 RIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKFDRV--RAFKWTIVAFVILS 308 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHHH
Confidence 8877766665555544333333333333332 2223334444445566666666655 444443 55555655444433
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeee-------ccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 332 AGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLV-------GEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-------~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
..+.+.+.++.+.+++..++.|++.+...+..+++..|.. ++|++| ..++..++..++|.++|+.+.+.+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g--~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 309 ALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDG--LVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcch--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444456666667778889999888777776665544 455555 899999999999888887766644
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=286.89 Aligned_cols=369 Identities=15% Similarity=0.214 Sum_probs=269.1
Q ss_pred CCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhc----ccCCchhhHH
Q 014880 20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHG 94 (416)
Q Consensus 20 ~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsD----r~Grrk~~ll 94 (416)
+++.++++.|++|+++.++.+.....|++.|++|. |+++.++|.++.+..+++++.+|++|.++| |+||||||++
T Consensus 2 ~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il 81 (473)
T PRK10429 2 SISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWIL 81 (473)
T ss_pred CCchhHHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHh
Confidence 57889999999999999999999999999999998 999999999999999999999999999999 5799999999
Q ss_pred hHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHH
Q 014880 95 AGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV 174 (416)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~ 174 (416)
.+.+...+++.+++.+ |. . +.......+.+...+++++++..++|+.++.+|+++|++||.+..+++..+.++
T Consensus 82 ~g~i~~~i~~~llf~~--p~-~----~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~i 154 (473)
T PRK10429 82 IGTLANSVVLFLLFSA--HL-F----EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASL 154 (473)
T ss_pred hhhHHHHHHHHHHHcC--CC-C----CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHH
Confidence 9999988887676642 31 1 111122222223346788999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccc----ccCCCchHHHHHHHHhhH
Q 014880 175 ANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG----LRGNSHARISWAYWFKKI 250 (416)
Q Consensus 175 g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~----~~~~~~~~~~~~~l~~~~ 250 (416)
|..+.+.+..++...++.. +...+|+....+.+++.++..+.+++..||++.+++ ++++.+.++.++.++|||
T Consensus 155 g~~~~~~~~~~~~~~~g~~---~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 231 (473)
T PRK10429 155 AGFVTAGFTLPFVNYVGGG---DRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKND 231 (473)
T ss_pred HHHHHHHHHHHHHHHhCCC---chhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCH
Confidence 8777766666665554422 234588988888888887777777777888632211 123345677778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHH
Q 014880 251 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVF 329 (416)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~ 329 (416)
.++.+.+..++.+........+.+.|.+...+ +....+.+..+..++.+++.++.+++ +|+++| +.+.++..+.++
T Consensus 232 ~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk--~~~~~~~~~~~~ 308 (473)
T PRK10429 232 QLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRR--ILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHH
Confidence 98887777777776666666666655544433 33444455555556677777776665 344443 666666655444
Q ss_pred HHHHHhh---cCCchhHHHHHHHHHHHHHHHHHHHhhhhhheee-------eccccccchhhhhHHHHHHHHHHHHHHHH
Q 014880 330 CGAGILI---LPMNMSAFMYVLAIFVGIANALMMVTGISMQNVL-------VGEDLSGCAFVCGTLSFLDKMSCGIAVYV 399 (416)
Q Consensus 330 ~~~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-------~~~~~~G~g~~~~~~~~~~~~g~~ig~~l 399 (416)
+...+.. .+.++.+.+++..++.+++.+...+..+++..+. .++|++| .++|..++..++|.++++.+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G--~~~s~~~~~~K~~~al~~~i 386 (473)
T PRK10429 309 SCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCES--IAYSVQTMVVKGGSAFAAFF 386 (473)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchh--HHHHHHHHHHHHHHHHHHHH
Confidence 4433322 2334555556666778888887776666555544 4566666 89999999999999998777
Q ss_pred Hhhh
Q 014880 400 LQSY 403 (416)
Q Consensus 400 ~~~~ 403 (416)
.+.+
T Consensus 387 ~g~~ 390 (473)
T PRK10429 387 IGVV 390 (473)
T ss_pred HHHH
Confidence 7654
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=294.24 Aligned_cols=366 Identities=25% Similarity=0.351 Sum_probs=291.0
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhc----ccCCchhhHHhHHHH
Q 014880 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHGAGSVL 99 (416)
Q Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsD----r~Grrk~~ll~~~~~ 99 (416)
++.+|++|+++.++.+.....++++|++|. |+++..+|++..+.++++++.+|+.|.++| |+||||||++.+.+.
T Consensus 2 ~~~ay~~g~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~ 81 (428)
T PF13347_consen 2 KKLAYGIGDLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAIL 81 (428)
T ss_pred cEEEeeHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHH
Confidence 456799999999999999999999999998 999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHH
Q 014880 100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 179 (416)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~ 179 (416)
..++..+++.+ .|..+.......+. .+...+++++++..++|+.++.+|+++|++||.+..++++.+..+|.++.
T Consensus 82 ~~~~~~llf~~-~p~~~~~~~~~~~~----~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~ 156 (428)
T PF13347_consen 82 LALSFFLLFSP-PPAGLSFTAKLVWL----FVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLA 156 (428)
T ss_pred HHHHHHHhhcc-ccchhhhhhHHHHH----HHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHH
Confidence 99998887741 12111111222222 23334678999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccc-cccccCCCchHHHHHHHHhhHHHHHHHHH
Q 014880 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL-KMGLRGNSHARISWAYWFKKILYYQVALV 258 (416)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 258 (416)
..+.+++...++... ...+|++...+.+++.++..++..+.+||+++ +++++++.+.++.+++++|||+++.+.+.
T Consensus 157 ~~~~~~l~~~~g~~~---~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~~l~~~ 233 (428)
T PF13347_consen 157 SFLAPILVSWFGGGD---TSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPFRILLLA 233 (428)
T ss_pred HHHhhhhhhhhccCc---cchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccchHHHHHHH
Confidence 888888776665321 22489999999999999999988899998322 23334455667788999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 014880 259 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL 337 (416)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 337 (416)
.++............+.|.++..|.+. ..+.+..+..++++++.++.+++ +|+++ |+.+..+..+.+++.+++.+.
T Consensus 234 ~~~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk--~~~~~~~~~~~~~~~~~~~~~ 310 (428)
T PF13347_consen 234 FFLQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGK--KKVYIIGLLLAALGFLLLFFL 310 (428)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccc--eeehhhhHHHHHHHHHHHHHH
Confidence 888888888777777778777777763 34555666677778888887766 34444 378888888888887777777
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhhheeee-------ccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 338 PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLV-------GEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 338 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-------~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
+.++.+..++..++.|++.+..+...+++..|.. ++|++| ..+|+.++..+++.++++.+.+.+
T Consensus 311 ~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g--~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 311 GPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREG--MYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred HhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchH--HHHHhhhhhhHHHHHHHHHHHHHH
Confidence 6567888888889999999988777666655544 345555 999999999999999998877755
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=276.93 Aligned_cols=362 Identities=20% Similarity=0.290 Sum_probs=267.0
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcc----cCCchhhHHhHHHHH
Q 014880 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIWHGAGSVLV 100 (416)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr----~Grrk~~ll~~~~~~ 100 (416)
++.|++|+++.+..+.+...+++.|++|. |+|+.++|++.++..+.+++.+|+.|+++|| +|||||+++.+.+..
T Consensus 1 ~~~yg~g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~ 80 (437)
T TIGR00792 1 KLSYGFGDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPF 80 (437)
T ss_pred CeeeecchHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHH
Confidence 35799999999999999999999999987 9999999999999999999999999999997 799999999888888
Q ss_pred HHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHH
Q 014880 101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY 180 (416)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~ 180 (416)
.++..+++. .|. .........+.+...+++++++..++|+.++.++++.|++||++..++++.+..+|.++++
T Consensus 81 ~i~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~ 153 (437)
T TIGR00792 81 SIVLVLLFT--TPD-----FSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVA 153 (437)
T ss_pred HHHHHHHHh--CCC-----CCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666553 131 1111112222333346788888999999999999998889999999999999999998888
Q ss_pred HHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccc-c-ccCCCchHHHHHHHHhhHHHHHHHHH
Q 014880 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM-G-LRGNSHARISWAYWFKKILYYQVALV 258 (416)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~~~l~ 258 (416)
.+..++...++.. ++..+|++.+.+.+++.++..++.++..||+++++ + ++++.+.++.+++++|||+++...+.
T Consensus 154 ~~~~~l~~~~~~~---~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (437)
T TIGR00792 154 VIVLPLVSYFGGG---DDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLA 230 (437)
T ss_pred HHHHHHHHHhCCC---cccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHH
Confidence 7777777654421 23578999999998888888777777778754321 1 12233456778889999998887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 014880 259 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL 337 (416)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 337 (416)
.++..........+.+.|..+..+ ++...+.+..+..++.+++.++.+++ +|+++| +.+..+..+.+++...+.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~--~~~~~~~~~~~~~~~~~~~~ 307 (437)
T TIGR00792 231 YLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK--ILFAGGILLMVLGYLIFFFA 307 (437)
T ss_pred HHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHc
Confidence 777766666655555556555555 34445555555667777888777765 344443 66777776666665555544
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhhheeee-------ccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 338 PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLV-------GEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 338 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-------~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
+ ++.+...+..++.|++.+...+..+++..+.. ++|++| .++|+.++..++|..+++.+.+.+
T Consensus 308 ~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 308 G-SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG--LVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34555566667888888887776666655543 355666 889999999999888887777655
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=266.87 Aligned_cols=371 Identities=18% Similarity=0.214 Sum_probs=258.1
Q ss_pred CCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcc----cCCchhh
Q 014880 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIW 92 (416)
Q Consensus 18 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr----~Grrk~~ 92 (416)
.+|+++++++.|++|+++.++.+....+|++.|+++. |+++.++|.+.++..+++++.+|+.|+++|| +||||||
T Consensus 2 ~~~~~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~ 81 (448)
T PRK09848 2 NQQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPF 81 (448)
T ss_pred CCcccHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHH
Confidence 4678999999999999999999999999999999997 9999999999999999999999999999998 4999999
Q ss_pred HHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHH
Q 014880 93 HGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT 172 (416)
Q Consensus 93 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~ 172 (416)
++.+.+...+...+++. .|..........+....+ .+.+++++..++|+.++..+++.|++||.+.++++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~ 155 (448)
T PRK09848 82 LLFGTAPLMIFSVLVFW--VPTDWSHSSKVVYAYLTY----MGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAA 155 (448)
T ss_pred HHHHHHHHHHHHHHHHh--CcCCCCcchHHHHHHHHH----HHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHH
Confidence 88877766655444442 131111111112222222 367788999999999999999999999999999998776
Q ss_pred HHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHH
Q 014880 173 MVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILY 252 (416)
Q Consensus 173 ~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (416)
.++........+++....... +...+|.....+.++++++..++.+...||+..++ +++.+.++.+++++|||.+
T Consensus 156 ~~~~~~~~~~~~p~i~~~~g~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~~~l~~n~~f 230 (448)
T PRK09848 156 SLTFVCLAFLIGPSIKNSSPE---EMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRI--VAQPSLKISLQTLKRNRPL 230 (448)
T ss_pred HHHHHHHHHHHHHHHHHhCCC---chhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCC--ccCCCHHHHHHHHhCCchH
Confidence 766544444434444332211 11223433334445555555555556667753322 2233456678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHH
Q 014880 253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG 331 (416)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~ 331 (416)
+...+..++............|.|+++.+|.++...++......++.+++.++.+++ +|+++ |+.+.++.++.+++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~--~~~~~~g~~~~~i~~ 308 (448)
T PRK09848 231 FMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGK--KNTFLIGALLGTCGY 308 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHH
Confidence 888877777777777767777778877788766544443333344556666666554 33333 477777877777776
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeee-------ccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 332 AGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLV-------GEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-------~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
..+.+.+.++.+..++..++.++|.+...+...++..+.. ++|++| .++|+.++.+++|+++|+.+.+.+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G--~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 309 LLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEG--LTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665554445566566677888998888776666655444 334556 899999999999999998877654
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-27 Score=225.25 Aligned_cols=352 Identities=15% Similarity=0.094 Sum_probs=241.7
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHH-Hh
Q 014880 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS-SV 107 (416)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~-~~ 107 (416)
+..+.+...+........+|.|..|.+.++.++|++.++..+...+.+|+.|+++||+||||+++ .+.+...++.. ..
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~-~~~~~~~~~~~~~~ 82 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMI-GADLIRAVLVAVLP 82 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHH-HHHHHHHHHHHHHH
Confidence 34566677778888888999999999999999999999999999999999999999999999844 44443333322 22
Q ss_pred hCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 014880 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (416)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~ 187 (416)
+. + .....+.+...+. ..+.+++.+...++..++++|+.+ +++|++..++.+....+|.++++.+++.+.
T Consensus 83 ~~---~--~~~~~~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 152 (365)
T TIGR00900 83 FV---A--LLGGLNIWQVYVL----AGILAIAQAFFTPAYQAMLPDLVP-EEQLTQANSLSQAVRSLFYIVGPGIGGLMY 152 (365)
T ss_pred HH---H--HcCCCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 21 0 0001122222222 235667777788888899999885 678999999999999999999888877766
Q ss_pred HhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhh-ccCccccccccCC----CchHHHHHHHHhhHHHHHHHHHHHHH
Q 014880 188 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSR-TEEPRLKMGLRGN----SHARISWAYWFKKILYYQVALVYMLT 262 (416)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~e~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~l~~~~~ 262 (416)
+..+||+.+.+.++..++..+..+.. .||++++++++.+ ++.++.+++++|||.++...+..++.
T Consensus 153 ----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (365)
T TIGR00900 153 ----------ATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLF 222 (365)
T ss_pred ----------HHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHH
Confidence 35689999888766555544433322 2332221111111 12334567788898887777666666
Q ss_pred HHHHHHHH-HHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCch
Q 014880 263 RLVVNVSQ-AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNM 341 (416)
Q Consensus 263 ~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (416)
........ .+.|.|..+.+|.+..+.+.+.....++.+++.++.+++.+..+| ++.+..+..+.+++.....+.+. +
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~ 300 (365)
T TIGR00900 223 NLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKR-MALMTGAIFVIGLAILVVGLTPP-N 300 (365)
T ss_pred HHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHHhhch-h
Confidence 66665555 778888887789998888888888888888888887766322222 35555555455555444444432 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 014880 342 SAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (416)
Q Consensus 342 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~ 405 (416)
.+...+..++.|++.+...+...++..+..|++++| ...++.+....++..+++.+.+.+.+
T Consensus 301 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 301 FPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLG--RVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667778889999988888888888888888888 77787777777777777666665543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-26 Score=213.31 Aligned_cols=357 Identities=11% Similarity=0.007 Sum_probs=264.0
Q ss_pred CCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHH
Q 014880 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGS 97 (416)
Q Consensus 18 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~ 97 (416)
+++..+...+..+++.|.....-......+|...+|+|+|+.++|++++++.+..+++.|+...+.||+.|||. ++...
T Consensus 7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~l-Ll~~l 85 (394)
T COG2814 7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRL-LLGLL 85 (394)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH-HHHHH
Confidence 46677888889999999888888889999999999999999999999999999999999999999999999887 66667
Q ss_pred HHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHH
Q 014880 98 VLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL 177 (416)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~ 177 (416)
.+++++..+... .| ++....+... +.++.-+....-..+...++.+ +++|+++.+....+..++.+
T Consensus 86 ~lFi~~n~l~al--Ap-------~f~~Ll~aR~----~~g~a~G~f~~i~~~~a~~lvp-p~~~~~Aiaiv~~G~tlA~v 151 (394)
T COG2814 86 ALFIVSNLLSAL--AP-------SFAVLLLARA----LAGLAHGVFWSIAAALAARLVP-PGKRGRALALVFTGLTLATV 151 (394)
T ss_pred HHHHHHHHHHHH--hc-------cHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcC-ccchhhHHHHHHHHHHHHHH
Confidence 777777655432 12 2233333333 4555555555556667777775 68899999998888888887
Q ss_pred HHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHH
Q 014880 178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVAL 257 (416)
Q Consensus 178 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 257 (416)
++..++ .+++ +..|||..|.+.+.++++..+..+...| +++.++ +++....+..+++|+++.+...+
T Consensus 152 ~GvPLG----t~ig------~~~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~~--~~~~~~~~~~~~l~~p~v~~~l~ 218 (394)
T COG2814 152 LGVPLG----TFLG------QLFGWRATFLAIAVLALLALLLLWKLLP-PSEISG--SLPGPLRTLLRLLRRPGVLLGLL 218 (394)
T ss_pred HhccHH----HHHH------HHhhHHHHHHHHHHHHHHHHHHHHHhCC-CccCCC--CCCcchhHHHHHhcCchHHHHHH
Confidence 765444 4444 5789999999999999999988888887 222111 12122233456899999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhh
Q 014880 258 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL-KAYYSAGGVLWVFCGAGILI 336 (416)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~ 336 (416)
..++...+.+...+|+-++++|..|++.+..+++...++++.++|..+.|++ .||. ++.+.....+.++....+.+
T Consensus 219 ~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl---~dr~~~~~l~~~~~l~a~~~l~l~~ 295 (394)
T COG2814 219 ATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRL---ADRGPRRALIAALLLLALALLALTF 295 (394)
T ss_pred HHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhh---ccccchhHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999999999999999999998877 4443 36666666666666666655
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeecccccc-chhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 014880 337 LPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSG-CAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 337 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G-~g~~~~~~~~~~~~g~~ig~~l~~~~~~~ 406 (416)
.+ ++.+...+..++.|+..............+..|++.+- .+...+.+|++..+|..+|+.+.++++..
T Consensus 296 ~~-~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~ 365 (394)
T COG2814 296 TG-ASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYA 365 (394)
T ss_pred hc-chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 55 34555556666667666554433333333333333322 35666677888888888889999887654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=228.77 Aligned_cols=353 Identities=10% Similarity=0.014 Sum_probs=253.5
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHH
Q 014880 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (416)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~ 102 (416)
+.......++.+...+....+...+|.+.+|+|.++.+.+|+.+.+.+..++.+|+.|+++||+||||. ++.+.+.+.+
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~-l~~~~~~~~~ 83 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRL-LMLGGTLFGL 83 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHH
Confidence 344566777778888888888889999988899999999999999999999999999999999999987 5566666665
Q ss_pred HHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHH
Q 014880 103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (416)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~ 182 (416)
+...+.. .+..+..+..+ .+.|++.+...+...+.+.+...++++|++..++......+|..+++.+
T Consensus 84 ~~~~~~~----------a~~~~~li~~r---~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~l 150 (495)
T PRK14995 84 ASLAAAF----------SPTASWLIATR---ALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLV 150 (495)
T ss_pred HHHHHHH----------cCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444321 11223333333 2566777666655566665655457889999999999999999988888
Q ss_pred HHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCC-------------------------
Q 014880 183 AFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNS------------------------- 237 (416)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~------------------------- 237 (416)
++.+. +..+|||.|++...+.++..++..+..||++.+++++.+.
T Consensus 151 gg~l~----------~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~ 220 (495)
T PRK14995 151 GGILL----------EHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFL 220 (495)
T ss_pred HHHhh----------ccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCC
Confidence 77666 3568999999987777776666666666643221111100
Q ss_pred ch------------------HHHH--------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHH
Q 014880 238 HA------------------RISW--------AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALV 291 (416)
Q Consensus 238 ~~------------------~~~~--------~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 291 (416)
+. ..+. .+++|||.+....+..++..........++|.|+++..|.++.+.+..
T Consensus 221 ~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~ 300 (495)
T PRK14995 221 SLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMF 300 (495)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 00 0000 256788877766666666666677777899999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHHHHHHHHhhhhhhee
Q 014880 292 PAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP-MNMSAFMYVLAIFVGIANALMMVTGISMQNV 369 (416)
Q Consensus 292 ~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 369 (416)
.....++..+++++.|++ +|.++ |+.+..+.++.+++...+.... .++.+......++.|++.+...+.......+
T Consensus 301 ~~~~~~~~~~~~~~~g~l~~r~g~--~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~ 378 (495)
T PRK14995 301 MLPVMVASGFSGPIAGILVSRLGL--RLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMA 378 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc--hHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 888888888888888776 44444 3666666666665554443332 2344455667788899999888777777677
Q ss_pred eeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 370 LVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 370 ~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
..|+++.| ...+..++.+.+|+.+|..+.+.+
T Consensus 379 ~~~~~~~g--~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 379 AAPPEKAA--AAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred cCCHHhcc--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888 788888888888888887777665
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-26 Score=215.38 Aligned_cols=333 Identities=9% Similarity=0.009 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCc
Q 014880 35 LNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC 114 (416)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~ 114 (416)
.++..+....+.+|...+|.|+|+.+.|++.+.+.+.+.+++++.|+++||+|||+. +.........+.....
T Consensus 2 ~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~-~~~~~~~~~~~~~~~~------ 74 (368)
T TIGR00903 2 ASQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWF-LFGSLATFAAAAGRLL------ 74 (368)
T ss_pred hhhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH-HHHHHHHHHHHHHHHH------
Confidence 467778888889999989999999999999999999999999999999999998875 4444333333322211
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 014880 115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT 194 (416)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~ 194 (416)
.. .+ .......+ .+.+++.+.. .+..+..++..+ ++||+++.++.+.+..+|.++++.++..+.
T Consensus 75 --~~-~~-~~~l~~~R---~l~G~g~~~~-~~~~~~~~~~~~-~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~------- 138 (368)
T TIGR00903 75 --DP-FN-YEWLLACQ---LLAALGQPFL-LNAFAPAASQIR-EERRDLVISLLSFAMYLGIIFALAAGLKIY------- 138 (368)
T ss_pred --Hh-cc-HHHHHHHH---HHHHhHhHHH-HHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 10 12 22333333 2455665543 344455567765 689999999999999999999888877765
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccc-CCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014880 195 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYL 273 (416)
Q Consensus 195 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 273 (416)
+..+||+.|.+.++++++..++.++..||++++++++ +.++..+++++++|||.++.+.+..++.....+.+..|+
T Consensus 139 ---~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wl 215 (368)
T TIGR00903 139 ---TAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFGFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWL 215 (368)
T ss_pred ---HccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999988888877777777788754322111 111122457889999999999888999889999999999
Q ss_pred HHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhh-HHHHHH-HHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 014880 274 AFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL-KAYYSA-GGVLWVFCGAGILILPMNMSAFMYVLAI 350 (416)
Q Consensus 274 ~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (416)
|.|+.+ .|.+.. .+....+..+.+.++. ++. ++..||. |+.... ...+.++....+.... +.........
T Consensus 216 p~~L~~-~g~s~~-~~~~~~l~~~~g~~g~---~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 288 (368)
T TIGR00903 216 EAALRP-AGLEDI-AGDAVALAILAGLIGV---AVIPDRVARAGLRSIYIRAAALLIAAFFLALAFEL--NRLALFAFIG 288 (368)
T ss_pred HHHHHH-CCCChH-HHHHHHHHHHHHHHHH---HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcc--ccHHHHHHHH
Confidence 999965 577654 4444444333333333 333 2222221 222222 2223233322222222 2333344555
Q ss_pred HHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhh
Q 014880 351 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (416)
Q Consensus 351 l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~ 402 (416)
+.++......+..+++..|..|++.+| ...|+.+...++|+..++.+...
T Consensus 289 l~~~~~~~~~~~~~~~~~~~~p~~~rg--t~~G~~~~~g~~~~~~~~~~~~~ 338 (368)
T TIGR00903 289 IAGLLMLPAYAIIMDWIGKFCDKELHG--KAAGAIGFTSRAISVALALAAML 338 (368)
T ss_pred HHHHhhhhhHHHHHHHHHHhcchhhcC--cccchhhHHHHHHHHHHHHHHHH
Confidence 666666666666777888888998888 67777777777777666666643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-26 Score=217.84 Aligned_cols=350 Identities=11% Similarity=-0.011 Sum_probs=227.3
Q ss_pred CchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHH
Q 014880 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (416)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~ 101 (416)
++...+...+..+..........+.+|.+.+|.|.|+.++|++.+.+.+...+.+++.|.++||+||||. +..+.+...
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~ 85 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKL-LIGLFVLFI 85 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH-HHHHHHHHH
Confidence 3444555555555443333444456787777789999999999999999999999999999999999987 555555555
Q ss_pred HHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHH
Q 014880 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (416)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~ 181 (416)
++...... . .+.+ .....+ .+.+++.+...+...+++.++.+ +++|++..++...+..+|..+++.
T Consensus 86 ~~~~~~~~-------~--~~~~-~l~~~r---~~~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~g~~~~~~~~g~~ig~~ 151 (390)
T PRK03545 86 ASHVLSAL-------A--WNFT-VLLISR---IGIAFAHAIFWSITASLAIRVAP-AGKKAQALSLLATGTALAMVLGLP 151 (390)
T ss_pred HHHHHHHH-------h--ccHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHhCC-hhhhhhHHHHHHHHHHHHHHHHhh
Confidence 55433321 1 1222 222222 24556666666666788888875 678999999999999999888877
Q ss_pred HHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHH
Q 014880 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML 261 (416)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 261 (416)
++..+. +..+||+.+.+.+++.++..+..++..||++++ ++ +..+.+++.+||++++......++
T Consensus 152 l~~~l~----------~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~ 216 (390)
T PRK03545 152 LGRVIG----------QYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE----HS-GSLKSLPLLFRRPALVSLYLLTVV 216 (390)
T ss_pred HHHHHH----------HHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC----Cc-chHHHHHHHHhCcHHHHHHHHHHH
Confidence 776554 356899999998887777666555555553211 11 123456778999987765555555
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcCCc
Q 014880 262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL-KAYYSAGGVLWVFCGAGILILPMN 340 (416)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~ 340 (416)
..........+.+.|+.++.|.+..+.+.......++.+++.++.+++ .||+ ++.+..+..+...+...+.... +
T Consensus 217 ~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l---~dr~~~~~~~~~~~~~~~~~~~l~~~~-~ 292 (390)
T PRK03545 217 VVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRL---GNRHPSGFLLIAIALLLVCLLLLLPAA-N 292 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHH---hhccchhHHHHHHHHHHHHHHHHHHHh-c
Confidence 555555566788888888889888888888777778888888887665 4444 2334444444444433332222 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhheeeecccccc--chhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 014880 341 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSG--CAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 341 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G--~g~~~~~~~~~~~~g~~ig~~l~~~~~~~ 406 (416)
+.+.+++..++.|++.+...+.......+..|+ .+| .|...+..+.+..+|..+++.+.++++-+
T Consensus 293 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~ 359 (390)
T PRK03545 293 SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-ATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLS 359 (390)
T ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence 555666677788887765544444444444443 444 23344444555556666667777666543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-25 Score=215.55 Aligned_cols=350 Identities=13% Similarity=0.024 Sum_probs=228.3
Q ss_pred CchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHH
Q 014880 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (416)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~ 101 (416)
.|+......++.+............+|.+.+|.|.|++++|+..++..+...+++|+.|.++||+||||. ++.+.+...
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~-~~~~~~~~~ 96 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYV-VILFAVLLT 96 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHH-HHHHHHHHH
Confidence 4444444444433333333344557888888889999999999999999999999999999999999987 555555555
Q ss_pred HHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHH
Q 014880 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (416)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~ 181 (416)
++...... ..+.+ .....+ .+.+++.+...+...++++|+.+ +++|++..++.....++|..+++.
T Consensus 97 ~~~~~~~~---------~~~~~-~l~~~r---~l~G~~~g~~~~~~~~~i~~~~~-~~~~~~a~~~~~~~~~~g~~ig~~ 162 (394)
T PRK10213 97 LSCLLVSF---------ANSFS-LLLIGR---ACLGLALGGFWAMSASLTMRLVP-PRTVPKALSVIFGAVSIALVIAAP 162 (394)
T ss_pred HHHHHHHH---------HChHH-HHHHHH---HHHHHhhHHHHHHHHHHHHHHcC-HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55433221 11222 222222 35667777777777888888875 678999999999989999988888
Q ss_pred HHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHH
Q 014880 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML 261 (416)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 261 (416)
+++.+.. ..+||+.+.+.+++.+++.++.....||++.++ ++.++..++.+|+|.++...+..++
T Consensus 163 l~~~l~~----------~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~ 227 (394)
T PRK10213 163 LGSFLGE----------LIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEP-----SHQKQNTFRLLQRPGVMAGMIAIFM 227 (394)
T ss_pred HHHHHHh----------hcCHHHHHHHHHHHHHHHHHHHHHHCCCCCccc-----ccchhHHHHHhcCHHHHHHHHHHHH
Confidence 7776652 458999999887777665555444455532111 1112334577889987766555455
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcCCc
Q 014880 262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL-KAYYSAGGVLWVFCGAGILILPMN 340 (416)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~ 340 (416)
..........++++++.++.|.+..+.+.......++.+++.++.+++ .||. ++.+..+..+...+...+.... +
T Consensus 228 ~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l---~~r~~~~~l~~~~~~~~~~~~~l~~~~-~ 303 (394)
T PRK10213 228 SFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFI---LKRSVKLALAGAPLVLAVSALVLTLWG-S 303 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHH---HhccchhHHHHHHHHHHHHHHHHHHHh-h
Confidence 444455556676554456679998888887777777888888776655 4443 3443444333333322222222 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhheeeecccccc--chhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 014880 341 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSG--CAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 341 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G--~g~~~~~~~~~~~~g~~ig~~l~~~~~~~ 406 (416)
+.+......++.|++.+...+...+...+..+++ .+ .+..++..+++..+|+.+++.+.+..|..
T Consensus 304 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~ 370 (394)
T PRK10213 304 DKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLT 370 (394)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence 5566666778889998887776665655555533 22 12445566677778888888888877644
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-25 Score=214.18 Aligned_cols=341 Identities=13% Similarity=0.084 Sum_probs=235.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccC
Q 014880 34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP 113 (416)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~ 113 (416)
+..........+.+|.+.++.|.|+.++|++.++..+...+++++.|+++||+||||. +..+.....++......
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~-~~~~~~~~~~~~~~~~~---- 89 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPV-LLLGLFIFALSSLGLAL---- 89 (385)
T ss_pred HHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH-HHHHHHHHHHHHHHHHH----
Confidence 3344455556667787777789999999999999999999999999999999999887 55555555555443321
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 014880 114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193 (416)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~ 193 (416)
. .+.. .... ...+.+++.+...++..+++.|..+ +++|++..+..+....+|..+++.+++.+.
T Consensus 90 ---~--~~~~-~~~~---~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~------ 153 (385)
T TIGR00710 90 ---S--NNIE-TLLV---LRFVQAFGASAGSVISQALVRDIYP-GEELSRIYSILMPVLALAPAVAPLLGGYIL------ 153 (385)
T ss_pred ---H--ccHH-HHHH---HHHHHHcchhHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 1 1222 2222 2235667777777888888998875 678999999999999999888877776555
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014880 194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYL 273 (416)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 273 (416)
+..+||+.+.+.+++.++..+..++..||++.+++++++++..+.+++.+|||+++...+...+..........+.
T Consensus 154 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (385)
T TIGR00710 154 ----VWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGA 229 (385)
T ss_pred ----HHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcC
Confidence 2457999998887777766666666666644332222222334566788899998877766666666666667788
Q ss_pred HHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC--C-chhHHHHHHH
Q 014880 274 AFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP--M-NMSAFMYVLA 349 (416)
Q Consensus 274 ~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~ 349 (416)
|.|+.++.|.++.+.+.+.....++.+++.++.+++ +|+++| +.+..+..+..++...+.... . +.........
T Consensus 230 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (385)
T TIGR00710 230 PFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAK--SLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPM 307 (385)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999888889999888888887788888888888776 444443 555555545444443333221 1 2333444556
Q ss_pred HHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhc
Q 014880 350 IFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (416)
Q Consensus 350 ~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~ 404 (416)
.+.|++.+...+.......+..| +++| ...++.+.....++.+.+.+++..+
T Consensus 308 ~~~g~~~~~~~~~~~~~~~~~~~-~~~g--~~~~~~~~~~~~~g~i~~~~~~~~~ 359 (385)
T TIGR00710 308 MFVGIGNSMISSIAMAYALEDFP-HVAG--TASALFGTLRLVLGAIVGYLVSLIH 359 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhccCc-ccch--HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77888888877777766666555 4456 7778877777776667766666443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-25 Score=212.74 Aligned_cols=333 Identities=12% Similarity=-0.030 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCccccccc
Q 014880 41 ACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (416)
Q Consensus 41 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (416)
.....++|.+.++.|+|+.++|++.+++.+...+++|+.|+++||+||||+ +..+.+...++...... .
T Consensus 20 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~-~~~~~~~~~~~~~~~~~----------~ 88 (377)
T TIGR00890 20 YTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAV-AMLGGILYGLGFTFYAI----------A 88 (377)
T ss_pred hhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccch-hHHhHHHHHHHHHHHHH----------H
Confidence 334456666666679999999999999999999999999999999999998 44555555555433221 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhh
Q 014880 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 200 (416)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~ 200 (416)
+..+.....+ .+.+++.+...........+.. +++|+++.+....+..+|..+++.+...+. +..
T Consensus 89 ~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~ 153 (377)
T TIGR00890 89 DSLAALYLTY---GLASAGVGIAYGIALNTAVKWF--PDKRGLASGIIIGGYGLGSFILSPLITSVI----------NLE 153 (377)
T ss_pred HHHHHHHHHH---HHHhHHHHHHHHhHHHHHHHHc--CcccHHHHHHHHHhcchhHhHHHHHHHHHH----------hcc
Confidence 1122222222 2455555544444444555554 467999999988888888765443333222 246
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccccc--cCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014880 201 QYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL--RGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI 278 (416)
Q Consensus 201 ~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 278 (416)
+||+.+.+.+++.++..+..++..||+++++++ ++.++.+...++.+||+.++.+.+..++..........+++.|.
T Consensus 154 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 232 (377)
T TIGR00890 154 GVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYG- 232 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHH-
Confidence 899999998888877776666666654432211 11122233457788998877666665555555555556667775
Q ss_pred hhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHH
Q 014880 279 NDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANA 357 (416)
Q Consensus 279 ~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 357 (416)
++.|.+..+.+.+.....++..++.++.+++ +|++|| +.+..+..+..++...+...+..+........++.+++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 310 (377)
T TIGR00890 233 QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ--KTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWG 310 (377)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc
Confidence 4568887777777777788888888888776 444443 5566666666666555544442233333344566777777
Q ss_pred HHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhc
Q 014880 358 LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (416)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~ 404 (416)
...+....+..+..|++++| ...|+.+....+|+.+++.+.+.+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~g~~~~~~~~g~l~ 355 (377)
T TIGR00890 311 GTISLFPSLVSDIFGPANSA--ANYGFLYTAKAVAGIFGGLIASHAL 355 (377)
T ss_pred cchhccHHHHHHHhhhhhhh--hHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655556666777888888 7778777777788777777666553
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-25 Score=212.64 Aligned_cols=337 Identities=12% Similarity=-0.012 Sum_probs=211.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCc
Q 014880 33 HMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (416)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~ 111 (416)
++...+......+++|.|+++. |.|+.++|++.+++.+...+.+|+.|+++||+||||++++.+.+...++......
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~-- 83 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW-- 83 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh--
Confidence 4556677788889999998765 9999999999999999999999999999999999998666555554444333221
Q ss_pred cCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHH--HhHHHHHHHHHHHHHHHHHHHHHHh
Q 014880 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVL--TSCRNAFTMVANLSLYAIAFIVFSV 189 (416)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~--~~~~~~~~~~g~~l~~~~~~~l~~~ 189 (416)
. .+.+ .....+ .+.+...+...+...++..+..+ +++|.+. .+....+.++|..+++.+++.+.
T Consensus 84 -----~--~~~~-~l~~~~---~~~g~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~-- 149 (375)
T TIGR00899 84 -----N--RNYF-LLLVLG---VLLSSFASTANPQLFALAREHAD-RTGREAVMFSSVMRAQISLAWVIGPPLAFWLA-- 149 (375)
T ss_pred -----c--chHH-HHHHHH---HHHHhhhhhhHHHHHHHHHHHhh-hcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH--
Confidence 1 1222 222222 23333334444455666666653 3444432 56666677788877776665554
Q ss_pred ccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 014880 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 269 (416)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 269 (416)
+..+||+.+.+.+++.++..+..++..||+++++++++ .+.+.++.+++++++......++........
T Consensus 150 --------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (375)
T TIGR00899 150 --------LGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL---TRLEVRGLLASRDTRLLFVACTLMWGCNILY 218 (375)
T ss_pred --------HhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc---CcchhhhhhcCcchHHHHHHHHHHHHHHHHH
Confidence 24689999999888777776666666676443222111 1223455677887766555555444445555
Q ss_pred HHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHH
Q 014880 270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVL 348 (416)
Q Consensus 270 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (416)
..++|.|+.+++|.++.+.+.......+...++.++.+++ +|+++| +.+.++.....+....+... ++.+.....
T Consensus 219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 294 (375)
T TIGR00899 219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKR--RLMLLAALAGVAFYTGLAAD--NSLWALLML 294 (375)
T ss_pred HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch--hHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 6778999988889988887766655555555666666655 344333 55555544434333333222 345555566
Q ss_pred HHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 349 AIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 349 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
.++.|++.+...+....+..+..|++ .+ .+.++.+....+|..+++.+.+.+
T Consensus 295 ~~~~g~~~g~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~g~~~g~~~~g~~ 346 (375)
T TIGR00899 295 QLLNAIFIGILAGIGMLYFQDLMPGR-AG--AATTLYTNTGRVGWIIAGSVGGIL 346 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcch-hh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888877766666666666654 34 566666666666666665555544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-25 Score=212.44 Aligned_cols=343 Identities=12% Similarity=0.007 Sum_probs=228.9
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhh
Q 014880 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (416)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~ 108 (416)
...+.+.....+....+++|.|++|.|.|++++|++.+++.+...+.+|++|.++||+|||+...........+......
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~ 88 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS 88 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677788889999999999999999999999999999999999999999999854321111111111111111
Q ss_pred CCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 014880 109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (416)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~ 188 (416)
....+.+...+.+. +.+.+.+...+...++..+. +++|++..+.......+|.++++.+++.+.+
T Consensus 89 --------~~~~~~~~l~~~~~----l~~~~~~~~~p~~~al~~~~---~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~ 153 (382)
T TIGR00902 89 --------AGAHNAWLLFIAIG----LFALFFSAGMPIGDALANTW---QKQFGLDYGKVRLIGSAAFIIGSALFGGLIG 153 (382)
T ss_pred --------HhhhhHHHHHHHHH----HHHHHHccchhHHHHHHHHH---HHHcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112222222222 34445544444455555432 4567888888888888888888877766663
Q ss_pred hccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccc-cCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 014880 189 VSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHARISWAYWFKKILYYQVALVYMLTRLVVN 267 (416)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 267 (416)
..|||..+.+..+...+.. ......|++++++++ +++++..+.+++++|||+++...+..++......
T Consensus 154 ----------~~g~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~ 222 (382)
T TIGR00902 154 ----------MFDEQNILAILTAGLAFML-IGFLIKPTIPPKDAIPEDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHA 222 (382)
T ss_pred ----------HcChhHHHHHHHHHHHHHH-HHHHcCCCCCCCccccccccccchhHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 4578988877655433222 222333321111111 1111223456789999999888888888778888
Q ss_pred HHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcCCchhHHH
Q 014880 268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFM 345 (416)
Q Consensus 268 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (416)
....+.|.|+++ .|.+..+.+....+..++.++..++.+++ .||+ ++.+.++.+...+....+.+. ++.+.+
T Consensus 223 ~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l---~~r~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~ 296 (382)
T TIGR00902 223 AYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKL---FQNCSARDLLLISAIACVGRWAIIGAI--EAFPLI 296 (382)
T ss_pred HHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHH---HhhCCHHHHHHHHHHHHHHHHHHHHhH--hhHHHH
Confidence 888999999965 79999888887777666777776666554 4444 477777877777776655543 477777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHH-----HHHHHHHHHHHHHHhhhccc
Q 014880 346 YVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLS-----FLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 346 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~-----~~~~~g~~ig~~l~~~~~~~ 406 (416)
+...++.|+..+...+....+..+. |+++++ ..+++++ ++..+|+.+++.+.|+++..
T Consensus 297 ~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~--~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~ 359 (382)
T TIGR00902 297 FLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIA--KLQALYNALAMGGLIAIFTAFAGFIYPTLGAG 359 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 8888999999999998888888776 766666 4445443 55566778888888887654
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-25 Score=210.22 Aligned_cols=336 Identities=13% Similarity=0.037 Sum_probs=223.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhC
Q 014880 31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (416)
Q Consensus 31 ~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~ 109 (416)
..++......+...++++.|+++. |.|+.++|++.++..+...+.+|+.|+++||+||||. +..+.....++......
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~-l~~~~~~~~~~~~~~~~ 95 (400)
T PRK11646 17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPM-IVTGMLMRAAGFATMAI 95 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHH-HHHHHHHHHHHHHHHHH
Confidence 666777888888899999998765 9999999999999999999999999999999999887 66666666665544321
Q ss_pred CccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 014880 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (416)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~ 189 (416)
..+.+.. ...+ .+.+++.+...++..+++.+..+ +++|++..++.+...++|..+++.+++.+.
T Consensus 96 ---------~~~~~~l-~~~~---~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-- 159 (400)
T PRK11646 96 ---------AHEPWLL-WLSC---ILSGLGGTLFDPPRTALVIKLIR-PHQRGRFFSLLMMQDSAGAVIGALLGSWLL-- 159 (400)
T ss_pred ---------hccHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 1122222 2222 35566666666777888888875 678999999999999999999888777665
Q ss_pred ccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 014880 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 269 (416)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 269 (416)
..+|++.+++.+++.++..+...+..||++.+ +++++.++.+++.+|||+++...+..+.........
T Consensus 160 ---------~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (400)
T PRK11646 160 ---------QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLS---TVRTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQV 227 (400)
T ss_pred ---------HhhHHHHHHHHHHHHHHHHHHHHHhCCccccc---ccchhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 34799999887776665554444445553221 112234556778899998765544443333333334
Q ss_pred HHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-hh--HHHHHHHHHHHHHHHHHHhhcCCchhHHHH
Q 014880 270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQ-RL--KAYYSAGGVLWVFCGAGILILPMNMSAFMY 346 (416)
Q Consensus 270 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~-r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (416)
..+.|.|+++..+ ++.+.+.+..+..+....+....+ ++.+ |. ++.+..+..+.+++...+...+ +.+...
T Consensus 228 ~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~ 301 (400)
T PRK11646 228 MLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIA---RWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--NLQQLF 301 (400)
T ss_pred HHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHH---HHHHHhcchhHHHHHHHHHHHHHHHHHHHhh--hHHHHH
Confidence 5678898877655 556666665554444443332222 2222 22 3445555555555544443333 444445
Q ss_pred HHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 347 VLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 347 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
+...+.+++.+...|...++..+..|++.+| .++|+.++...+|..+|+.+.+.+
T Consensus 302 ~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~ig~~l~G~l 356 (400)
T PRK11646 302 TLICLFYIGSIIAEPARETLSASLADARARG--SYMGFSRLGLALGGAIGYIGGGWL 356 (400)
T ss_pred HHHHHHHHHHHHHHccHHHHHHhcCCcccch--hhhhHHHHHHHHHHHhcccchHHH
Confidence 5556778888877777777888888888888 677777777777776665555544
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=209.93 Aligned_cols=334 Identities=13% Similarity=-0.001 Sum_probs=246.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHH
Q 014880 48 LLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETI 127 (416)
Q Consensus 48 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (416)
|...+|.++|.+|+|.+.+...+.+.++..+.|.++||.++|+. +-.+.+..++..+++-. .+....+.
T Consensus 53 p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~f-m~~gLilsai~nil~Gf----------s~s~~~~~ 121 (448)
T COG2271 53 PALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYF-MAFGLILSAIVNILFGF----------SPSLFLFA 121 (448)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcee-ehHHHHHHHHHHHHHhh----------hhHHHHHH
Confidence 33344458999999999999999999999999999999999875 77777777666554321 12233333
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHH
Q 014880 128 SYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAY 207 (416)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 207 (416)
.... +.+..-+...+|....+..+.+ ++|||+..++.+...++|..+.+.+... ..+. .+.+||..|+
T Consensus 122 ~l~~---lng~fQg~Gwpp~~~~i~~Wfs-r~eRG~~~siWn~shNiGGal~~~~~~l--a~~~------~~~~w~~~f~ 189 (448)
T COG2271 122 VLWV---LNGWFQGMGWPPCARTITHWFS-RKERGTWWSIWNTSHNIGGALAPLVALL--AFFA------FHGGWRAAFY 189 (448)
T ss_pred HHHH---HHHHHhcCCCcHHHHHHHHHcC-ccccCceEEEehhhhhcccchHHHHHHH--HHHH------hccchhHHHH
Confidence 3333 3334444555677777777775 6889999999999999999887766622 2222 3558999999
Q ss_pred HHHHHHHHHHHHHHhhccCccccc-------------c--ccCCCc-----hHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 014880 208 SSIFIGCCFVGIFLSRTEEPRLKM-------------G--LRGNSH-----ARISWAYWFKKILYYQVALVYMLTRLVVN 267 (416)
Q Consensus 208 ~~~~i~~~~~~~~~~~~~e~~~~~-------------~--~~~~~~-----~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 267 (416)
..++++++..++.++..|++++.. + ++++++ .+.-++.++|||..|.+++.+++....-+
T Consensus 190 ~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~ 269 (448)
T COG2271 190 FPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRY 269 (448)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 999999999998888887754310 0 011111 12235779999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhh-HHHHHHHHHHHHHHHHHHhhcCCchhHHH
Q 014880 268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL-KAYYSAGGVLWVFCGAGILILPMNMSAFM 345 (416)
Q Consensus 268 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (416)
++..|.|.|+.|..|++...+....+..-+++++|+++.|++ |++.|.. ..+-++.++...++.+.++..++++.+..
T Consensus 270 gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~ 349 (448)
T COG2271 270 GINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLD 349 (448)
T ss_pred HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHH
Confidence 999999999999999999999999999999999999999987 4433221 34445556666677667777776667777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHH-HHHHHHHHHhhhccc
Q 014880 346 YVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKM-SCGIAVYVLQSYQSK 406 (416)
Q Consensus 346 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~-g~~ig~~l~~~~~~~ 406 (416)
.++++..|+..-..+-..-....|..|++..| .+.|+.++...+ |..++++..+..-++
T Consensus 350 ~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaG--tA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~ 409 (448)
T COG2271 350 AILLFIIGFLIYGPQMLIGLAAAEFVPKKAAG--TATGFVGLFAYLIGAALAGLPLGYIADT 409 (448)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccccHhhcc--chhchhhhHHHHhhHHhcCCcceeeEec
Confidence 77778888765444433333456778999988 899999888888 888887777766443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=209.35 Aligned_cols=343 Identities=13% Similarity=0.054 Sum_probs=226.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhccc-----CCchhhHHhHHHHHHHHHHHhhCC
Q 014880 36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSVFGG 110 (416)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~-----Grrk~~ll~~~~~~~~~~~~~~~~ 110 (416)
..+..+.....+|.|+++.|+|.+++|++..+... .+.+|++|+++||+ ||||+|+..+.+..+++...+..
T Consensus 11 ~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~- 87 (402)
T PRK11902 11 SGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF- 87 (402)
T ss_pred HhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh-
Confidence 44566677788999999999999999999877776 48999999999999 99998888877777666554432
Q ss_pred ccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 014880 111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (416)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~ 190 (416)
.+ +..+ .+..... ..+.+...+..+++..++++|+.+ +|||++.++++..+..+|.++++.+...+...
T Consensus 88 -~~----~~~~-~~~l~~~---~~~~~~~~~~~~~~~~al~~~~~~-~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~- 156 (402)
T PRK11902 88 -CP----PHAA-LWPLAGL---AVLVAFLSASQDIVFDAYSTDVLH-PEERGAGAAVKVLGYRLAMLVSGGLALWLADR- 156 (402)
T ss_pred -cC----ccch-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcC-hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc-
Confidence 11 1112 2222211 124456677788889999999974 67899999999999999998887776655521
Q ss_pred cccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccC--CCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 014880 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--NSHARISWAYWFKKILYYQVALVYMLTRLVVNV 268 (416)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 268 (416)
..+||..+++.+++.++..+. .+..||++.++++++ +++.++.+++++|||.++.+.+..++.......
T Consensus 157 --------~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~ 227 (402)
T PRK11902 157 --------VLGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAF 227 (402)
T ss_pred --------ccCHHHHHHHHHHHHHHHHHH-HHhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHH
Confidence 248999999988776655544 345566543322111 123456778899999887766655555444333
Q ss_pred HHHHHHHHHHhhcccchhhhhHHHHHHH-HHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHH---hhcCCchhH
Q 014880 269 SQAYLAFYVINDLRMGQSAKALVPAIIY-ICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI---LILPMNMSA 343 (416)
Q Consensus 269 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~-i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 343 (416)
...+.+.++.++.|.++.+.+.+..... ++.+++.++.+++ +|+++| +.+..+..+.++....+ ...+ ++.+
T Consensus 228 ~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~--~~l~~~~~~~~l~~l~~~~~~~~~-~~~~ 304 (402)
T PRK11902 228 AGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY--RSLMLFGVLQAVSNLGYWVLAVTP-KHLW 304 (402)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHhcC-CcHH
Confidence 3345566777778999888887765433 3567777777765 444443 44444444433333222 2222 3444
Q ss_pred HHHHHH----HHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 014880 344 FMYVLA----IFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 344 ~~~~~~----~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~~ 406 (416)
.+.... +..|++.+...+....+.++..|.+..+ ...+..++....++.+++.+.|++|..
T Consensus 305 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~G~l~~~~G~~ 369 (402)
T PRK11902 305 TMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYA--LLSALASVGRVYVGPTSGYLVEAYGWP 369 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 444333 3445556666666777777777766655 656666677777778999999988754
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=212.97 Aligned_cols=358 Identities=13% Similarity=0.040 Sum_probs=225.0
Q ss_pred CCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHH
Q 014880 19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV 98 (416)
Q Consensus 19 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~ 98 (416)
++.+++......++.+.............|.+.++.|.|+.++|++.++..+...+++|+.|.++||+||||+++ .+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~-~~~~ 85 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMV-TSIV 85 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHH
Confidence 445566667777888877877777888888877778999999999999999999999999999999999999844 4555
Q ss_pred HHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHH
Q 014880 99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 178 (416)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l 178 (416)
...++...... . .+.. ..... ..+.+++.+...+...+++.|..+ +++|++..++.+.+..+|..+
T Consensus 86 ~~~~~~~~~~~-------~--~~~~-~l~~~---~~l~G~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~g~~~ 151 (405)
T TIGR00891 86 LFSAGTLACGF-------A--PGYI-TMFIA---RLVIGIGMGGEYGSSAAYVIESWP-KHLRNKASGLLISGYAVGAVV 151 (405)
T ss_pred HHHHHHHHHHH-------h--ccHH-HHHHH---HHHHHhhhhhhhHHHHHHHHHhCC-hhhhhHHHHHHHHHHHHHHHH
Confidence 44444433221 1 1222 22222 236677777777778888888875 578999999999999999998
Q ss_pred HHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccc-cCCCchHHHHHHHHh---------
Q 014880 179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHARISWAYWFK--------- 248 (416)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~l~~--------- 248 (416)
++.+...+.... ..+||+.+.+.++..++.. +.....||++..+++ ++++..++..++..+
T Consensus 152 ~~~l~~~l~~~~--------~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (405)
T TIGR00891 152 AAQVYSLVVPVW--------GDGWRALFFISILPIIFAL-WLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIV 222 (405)
T ss_pred HHHHHHHHHHhc--------CccHHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhh
Confidence 887776665432 1359999887655444443 333445664321111 100000000010000
Q ss_pred ----------hHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHh
Q 014880 249 ----------KIL----YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTG 313 (416)
Q Consensus 249 ----------~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~ 313 (416)
.++ +........+..........++|.|+.++.|.+..+.+.+.....++.+++.++.+++ +|++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g 302 (405)
T TIGR00891 223 MTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLG 302 (405)
T ss_pred hhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 001 1122223333334444566788999988889998888888888888888888888776 4444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHH
Q 014880 314 QRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSC 393 (416)
Q Consensus 314 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~ 393 (416)
+| +.+..+.....+......... ++.+...+..++.++..+...+.......+..|++.+| .+.|+.+....+|.
T Consensus 303 ~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~g~ 377 (405)
T TIGR00891 303 RR--KAYVCSLLAGQLLIIPVFAIG-ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRA--AGLGFTYQLGNLGG 377 (405)
T ss_pred ch--hhhHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhH--HHhhHHHHHHHHHH
Confidence 43 555555444322222222222 34444444445555555554555556667777888877 66676666666666
Q ss_pred HHHHHHHhhhcc
Q 014880 394 GIAVYVLQSYQS 405 (416)
Q Consensus 394 ~ig~~l~~~~~~ 405 (416)
.+++.+.+.+.+
T Consensus 378 ~~g~~~~g~l~~ 389 (405)
T TIGR00891 378 ALAPIIGALLAQ 389 (405)
T ss_pred HHHHHHHHHHHH
Confidence 666655555443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=213.35 Aligned_cols=350 Identities=10% Similarity=0.014 Sum_probs=229.8
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHH
Q 014880 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (416)
Q Consensus 27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~ 106 (416)
....+.++..........+.+|.+.++.|.|+.+.++..+.+.+...+.+|+.|+++||+||||. ++.+.....++...
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~~~ 94 (406)
T PRK15402 16 LCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPV-MLAGVAFFILTCLA 94 (406)
T ss_pred HHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHH
Confidence 34555555555566666777787777889999999999999999999999999999999999987 55555555555433
Q ss_pred hhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHH
Q 014880 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (416)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l 186 (416)
... . .+ .+.....+ .+.+++.+.......+.+.|..+ +++|.+..+.......++..+++.++..+
T Consensus 95 ~~~-------~--~~-~~~l~~~~---~l~G~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l 160 (406)
T PRK15402 95 ILL-------A--QS-IEQFTLLR---FLQGIGLCFIGAVGYAAIQESFE-EADAIKITALMANVALLAPLLGPLVGAAL 160 (406)
T ss_pred HHH-------H--cc-HHHHHHHH---HHHHhHhhhHHHHHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 1 12 22222222 24555555554555666677664 56777877777766667777766665554
Q ss_pred HHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccc-CCCchHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014880 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLV 265 (416)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 265 (416)
. +..+||+.+++.+++.++..+..++..||++.+++++ +.++..+.+++++|||+++...+...+....
T Consensus 161 ~----------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (406)
T PRK15402 161 I----------HVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNRRFVAGALALGLVSLP 230 (406)
T ss_pred H----------HccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 4 2457999998887777666655555566643322111 1123455667889999988766666555555
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhc---CCch
Q 014880 266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL---PMNM 341 (416)
Q Consensus 266 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~ 341 (416)
......+.|.|+.+++|.++.+.+.......++..++.++.+++ +|.++ ++.+..+..+..++...+... ..++
T Consensus 231 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 308 (406)
T PRK15402 231 LLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPL--RSLIRMGLWPMVAGLLLAALATVISSHA 308 (406)
T ss_pred HHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 55556678888888889988877766665566677777777665 33333 355566655555444443322 1234
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 014880 342 SAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 342 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~~ 406 (416)
.+......++.|++.+...+......... +++++| .+.+.+++.+.+|..+|+.+.+.+.+.
T Consensus 309 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g--~~~~~~~~~~~~~~~~g~~~~~~l~~~ 370 (406)
T PRK15402 309 YLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKG--TVSAAMGMLSMLIFTVGIELSKHAYLG 370 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccccc--HHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 45556667788888887765554443332 336666 888999999999999999988887544
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=210.15 Aligned_cols=379 Identities=11% Similarity=-0.016 Sum_probs=236.9
Q ss_pred cccccCCCCCCCCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 014880 6 VMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDR 85 (416)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr 85 (416)
.++++..++|..+++-..........-.+...+.......++|.+.+++|+|+.+.|++.+.+.+...+.+|+.|+++||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr 87 (438)
T PRK10133 8 TQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK 87 (438)
T ss_pred hhhhhccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333333333444445555666666778888766679999999999999999999999999999999
Q ss_pred cCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHH
Q 014880 86 FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLT 165 (416)
Q Consensus 86 ~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~ 165 (416)
+||||. +..+...+.++..+.. + ....+........+ .+.|++.+..++..++.+.+.. ++++|.+..
T Consensus 88 ~G~r~~-l~~g~~~~~~~~~l~~----~---~~~a~~~~~ll~~r---~l~G~g~g~~~~~~~~~v~~~~-~~~~~~~~~ 155 (438)
T PRK10133 88 LSYKAG-IITGLFLYALGAALFW----P---AAEIMNYTLFLVGL---FIIAAGLGCLETAANPFVTVLG-PESSGHFRL 155 (438)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHH----H---HHhcCCHHHHHHHH---HHHHHHHHHHHhhHHHHHHHhC-ChhhHHHHH
Confidence 999998 6667777776654431 0 00111122222222 3677888888888888888764 355666667
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-cccc-------cCch--------hhHHHHHHHHHH-HHHHHHHHHHHhhccCcc
Q 014880 166 SCRNAFTMVANLSLYAIAFIVFSVS-TAKT-------HADL--------ENQYRWIAYSSI-FIGCCFVGIFLSRTEEPR 228 (416)
Q Consensus 166 ~~~~~~~~~g~~l~~~~~~~l~~~~-~~~~-------~~~~--------~~~~~~~~~~~~-~i~~~~~~~~~~~~~e~~ 228 (416)
+..+....+|..+++.++.++.... +... ..+. ..+||++|.... +..++..++.....||.+
T Consensus 156 s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~ 235 (438)
T PRK10133 156 NLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ 235 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 8888888899998888876655211 0000 0000 135777775433 333333333233334322
Q ss_pred cccccc-CCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhhhhHHHHHHHHHHHHHHHHH
Q 014880 229 LKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV-INDLRMGQSAKALVPAIIYICSFIVSILL 306 (416)
Q Consensus 229 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~i~~~~~~~l~ 306 (416)
.+++++ ++.+..+..++++|||.++...+..++..........|.+.|+ ++.+|.++.+.+.......++.+++.++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~ 315 (438)
T PRK10133 236 SDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTG 315 (438)
T ss_pred ccccccccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1112334567889999987666666666666666777889886 45689999999988888888899999988
Q ss_pred HHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHH
Q 014880 307 QEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTL 385 (416)
Q Consensus 307 ~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~ 385 (416)
+++ +|+++| +.+..+..+.++......+.+ +.+ ......+.|++.+..+|...+...+..+++ .+ ...++.
T Consensus 316 g~l~~r~g~~--~~l~~~~~~~~~~~~~~~~~~--~~~-~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~--~as~l~ 387 (438)
T PRK10133 316 TWLISRFAPH--KVLAAYALIAMALCLISAFAG--GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK--YGSSFI 387 (438)
T ss_pred HHHHHHcCHH--HHHHHHHHHHHHHHHHHHHcC--ChH-HHHHHHHHHHHHHHHHHHHHHHHHcccchh-hc--cchhHH
Confidence 776 444443 566666555444433333333 222 245567889999999999998877776654 44 444544
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 014880 386 SFLDKMSCGIAVYVLQSYQS 405 (416)
Q Consensus 386 ~~~~~~g~~ig~~l~~~~~~ 405 (416)
.. ..+|+.+++.+.+.+.+
T Consensus 388 ~~-~~~g~~~~~~i~G~l~~ 406 (438)
T PRK10133 388 VM-TIIGGGIVTPVMGFVSD 406 (438)
T ss_pred hH-HhccchHHHHHHHHHHH
Confidence 42 33566666666665544
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-25 Score=215.79 Aligned_cols=351 Identities=15% Similarity=0.073 Sum_probs=239.5
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHH
Q 014880 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (416)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~ 102 (416)
.+..+...++.+..........+.+|.+.++.|.|+.+.+++.+.+.+...+++|+.|+++||+||||. ++.+.....+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~-~~~~~~~~~~ 87 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNI-FFTAIVLFTL 87 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHH
Confidence 334556667777777777788889999999899999999999999999999999999999999999998 4455555544
Q ss_pred HHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHH
Q 014880 103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (416)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~ 182 (416)
+...... . .+ .+..... ..+.+++.+...+...+.+.+..+ +++|++..++.....++|..+++.+
T Consensus 88 ~~~~~~~-------~--~~-~~~l~~~---~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~ 153 (471)
T PRK10504 88 GSLFCAL-------S--GT-LNELLLA---RVLQGVGGAMMVPVGRLTVMKIVP-REQYMAAMTFVTLPGQVGPLLGPAL 153 (471)
T ss_pred HHHHHHH-------h--CC-HHHHHHH---HHHHHhhhHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4433221 1 12 2222222 236667777766667777788764 6788999999888888888888777
Q ss_pred HHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccc---------------------CC-----
Q 014880 183 AFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR---------------------GN----- 236 (416)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~---------------------~~----- 236 (416)
++.+. +..+||+.|.+......+..+......|+.+.++.+. ++
T Consensus 154 ~g~l~----------~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (471)
T PRK10504 154 GGLLV----------EYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLS 223 (471)
T ss_pred HHHHH----------hhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcc
Confidence 76665 2467999998876666555554444444322111000 00
Q ss_pred -------------------------CchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHH
Q 014880 237 -------------------------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALV 291 (416)
Q Consensus 237 -------------------------~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 291 (416)
++...+ .+++|||+++...+..++..........+.|.|+++..|.++.+.++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 302 (471)
T PRK10504 224 PLAIAGLVAVGVVALLLYLLHARNNNRALFS-LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLM 302 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCccC-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 000011 247889998877777777767766666778888887789998888877
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHHHHHHHHhhhhhhee
Q 014880 292 PAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP-MNMSAFMYVLAIFVGIANALMMVTGISMQNV 369 (416)
Q Consensus 292 ~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 369 (416)
.....++..++.++.+++ +|+++| +.+..+..+.++...++.+.+ .++.+......++.|++.+..++.......+
T Consensus 303 ~~~~~~~~~~~~~~~~~l~~r~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 380 (471)
T PRK10504 303 MIPMVLGSMGMKRIVVQVVNRFGYR--RVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLK 380 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCch--HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666666666776665 344333 666666665565555544443 2233333445566778887777766667667
Q ss_pred eeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 370 LVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 370 ~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
..|+|.+| ..+++.++.+++|..+|+.+.+.+
T Consensus 381 ~~~~~~~g--~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 381 DLPDNLAS--SGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred cCCHHhcc--chHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888 788999999999988887777655
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=220.86 Aligned_cols=349 Identities=13% Similarity=0.034 Sum_probs=247.0
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHh
Q 014880 28 YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (416)
Q Consensus 28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~ 107 (416)
...++.+............+|.+.++.|.++.+.+++.+.+.+...++.|+.|+++||+||||. ++.+.+...++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~ 84 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRL-FLISTFAFTLGSLLC 84 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHH-HHHHHHHHHHHHHHH
Confidence 3445556666677777788898888889999999999999999999999999999999999987 555666555554443
Q ss_pred hCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 014880 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (416)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~ 187 (416)
.. . .+ .......+ .+.+++.+...+...+++.|..+ +++|++..++......+|..+++.+++.+.
T Consensus 85 ~~-------~--~~-~~~l~~~~---~~~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 85 GV-------A--PN-LELMIIFR---VIQGFGGGPLIPLSFSTLLNIYP-PEKRGRAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred hC-------c--CC-HHHHHHHH---HHHHhhhhhHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence 21 1 12 22222222 35667777777778888888875 678999999988888888888777665554
Q ss_pred HhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccc-----------------------CCCc---hH-
Q 014880 188 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-----------------------GNSH---AR- 240 (416)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~-----------------------~~~~---~~- 240 (416)
+..+||+.+++.+.+.++..+...+..||++++++++ ++++ ..
T Consensus 151 ----------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (485)
T TIGR00711 151 ----------ENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNE 220 (485)
T ss_pred ----------cCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchH
Confidence 3568999998887777666655555555533211110 0000 00
Q ss_pred -----------------------HH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHH
Q 014880 241 -----------------------IS--WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAII 295 (416)
Q Consensus 241 -----------------------~~--~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 295 (416)
++ -.+++|+|+++...+..++..........++|.|+++..|.++.+.+......
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~ 300 (485)
T TIGR00711 221 ILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPV 300 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 00 12467888877777777777777777788999999998999999888888888
Q ss_pred HHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhh-c-CCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeec
Q 014880 296 YICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI-L-PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVG 372 (416)
Q Consensus 296 ~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 372 (416)
.++..++.++.+++ +|+++| +.+..+..+.+++...+.+ . +..+.+......++.|++.+...+.......+..|
T Consensus 301 ~~~~~~~~~~~g~l~~r~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~ 378 (485)
T TIGR00711 301 GLAPMLSSPIAGRMGDKIDPR--KLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLP 378 (485)
T ss_pred HHHHHHHHHHHHHHHhhcCcH--HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88888888888776 444443 6666676666666555442 2 22344555566788899998877665555556678
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 014880 373 EDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (416)
Q Consensus 373 ~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~ 405 (416)
+++.| .+.++.++.+.+|+.+|+.+.+.+-.
T Consensus 379 ~~~~g--~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 379 PHKIA--RGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888 88898898899998888887776643
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-25 Score=207.88 Aligned_cols=329 Identities=13% Similarity=0.063 Sum_probs=225.6
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhccc-----CCchhhHHhHHHHHHHHHHHhhCCccCcc
Q 014880 41 ACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (416)
Q Consensus 41 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~-----Grrk~~ll~~~~~~~~~~~~~~~~~~~~~ 115 (416)
......+|.+.+|.|+|.+++|+.... .+...+ ++++|.++||+ ||||++++.+.+...++...+.. .+
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~--~~-- 78 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSF--LV-- 78 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHc--CC--
Confidence 345567888888889999999999766 344444 99999999997 99999877777766666433321 11
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 014880 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 195 (416)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~ 195 (416)
+..+.+.....+ .+.+...+...++..++++|+.+ +|+|+++.++...+..+|.++++.++..+....+.+.
T Consensus 79 --~~~~l~~l~~~~----~~~~~~~~~~~~~~~a~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~- 150 (356)
T TIGR00901 79 --PSTDLPLLAGLA----FLIAFFSATQDIALDAWRLEILS-DEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT- 150 (356)
T ss_pred --cchhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCC-HhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-
Confidence 111222121111 24456667778889999999985 6889999999999999999999888877776554211
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccc--CCCchHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHH
Q 014880 196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GNSHARISWAYWFKKIL---YYQVALVYMLTRLVVNVSQ 270 (416)
Q Consensus 196 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~l~~~~~---~~~~~l~~~~~~~~~~~~~ 270 (416)
...++||..|.+.+++.++..+..++..||++++++++ ++++.++.+++++|||. ++.+.+..++.....+...
T Consensus 151 -~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (356)
T TIGR00901 151 -GLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAAT 229 (356)
T ss_pred -ccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 13457999999888877776665555566643321111 11223456777888875 5555666666677777788
Q ss_pred HHHHHHHHhhcccchhhhhHHHHHHH-HHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC--C-------
Q 014880 271 AYLAFYVINDLRMGQSAKALVPAIIY-ICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP--M------- 339 (416)
Q Consensus 271 ~~~~~~~~~~~g~~~~~~~~~~~~~~-i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~------- 339 (416)
.+.|.|+.+ .|.+..+.+.+..+.. ++.+++.++.+++ +|+++| +.+..+.++.+++...+.+.. .
T Consensus 230 ~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (356)
T TIGR00901 230 VLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL--YALLLFGIVQALTNAGFVWLASNGHHDGITF 306 (356)
T ss_pred HHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 899999987 7998888776665544 4566777777766 455444 555555555555544333321 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHH
Q 014880 340 NMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLD 389 (416)
Q Consensus 340 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~ 389 (416)
++.+......++.+++.+...+...++..+.+|++.+| ..+|+.+...
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~ 354 (356)
T TIGR00901 307 PHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGA--TQMALLSSLS 354 (356)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccH--HHHHHHHHHH
Confidence 23455566667889999999999999999999999999 7777665543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=208.39 Aligned_cols=378 Identities=15% Similarity=0.088 Sum_probs=254.6
Q ss_pred CchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhc----ccCCchhhHHhHH
Q 014880 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHGAGS 97 (416)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsD----r~Grrk~~ll~~~ 97 (416)
+.++.+..+...++.++.++...+++++|++++|.++.+++++..+..+.+.+.+|+.|+++| |+||||++++.+.
T Consensus 2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~ 81 (477)
T TIGR01301 2 PLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGA 81 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHH
Confidence 567777888888899999999999999999888999999999999999999999999999999 5999999888777
Q ss_pred HHHHHHHHHhhCCccCcc---cc---cccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccch-hHHHhHHHH
Q 014880 98 VLVAVSFSSVFGGCMPCR---IL---STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSR-VVLTSCRNA 170 (416)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r-~~~~~~~~~ 170 (416)
+..+++..++.. .+.. +. ......+....+.+...+.+++.+..+.|+.++++|+.++++|| +.+.++.+.
T Consensus 82 ~~~~~~l~ll~~--~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~ 159 (477)
T TIGR01301 82 ALVAFAVILIGF--AADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSF 159 (477)
T ss_pred HHHHHHHHHHHh--CchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH
Confidence 777777555431 0100 00 00011111122222223566788888999999999999865544 578999999
Q ss_pred HHHHHHHHHHHHHHHH--HHhccccc---cCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccc---------cCC
Q 014880 171 FTMVANLSLYAIAFIV--FSVSTAKT---HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---------RGN 236 (416)
Q Consensus 171 ~~~~g~~l~~~~~~~l--~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~---------~~~ 236 (416)
+.++|+++++.+++.. ...++... ......+.++.|.+.+++.++..++..+.+||++..+++ .++
T Consensus 160 ~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~ 239 (477)
T TIGR01301 160 FMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSK 239 (477)
T ss_pred HHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccc
Confidence 9999999998887654 22222110 011224789999998888888888888888885431111 011
Q ss_pred CchHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccchh------h---hh-HHHHHHHHHHH
Q 014880 237 SHARISWAYWFKK-----ILYYQVALVYMLTRLVVNVSQAYLAFYVIN-DLRMGQS------A---KA-LVPAIIYICSF 300 (416)
Q Consensus 237 ~~~~~~~~~l~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~------~---~~-~~~~~~~i~~~ 300 (416)
.+.+..+++++++ +.++.+++..++.++++..+..|...|+-+ .++-++. + .| +...+..+.+.
T Consensus 240 ~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~ 319 (477)
T TIGR01301 240 HGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG 319 (477)
T ss_pred cchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 1122233444333 447889999999999999998898888764 3442211 1 12 33344444455
Q ss_pred HHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCC--ch-----------------hHHHHHHHHHHHHHHHHHH
Q 014880 301 IVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPM--NM-----------------SAFMYVLAIFVGIANALMM 360 (416)
Q Consensus 301 ~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------------~~~~~~~~~l~g~~~~~~~ 360 (416)
+.+++..++ +++++| |+...++.++.++++....+... ++ .+..++...+.|+.++..+
T Consensus 320 i~s~~l~~l~~~~g~~-k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~ 398 (477)
T TIGR01301 320 ITSIGMEKLCRGWGAG-KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITY 398 (477)
T ss_pred HHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHH
Confidence 555555554 333322 35667777777777655543321 00 3566677788999999999
Q ss_pred HhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhh
Q 014880 361 VTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (416)
Q Consensus 361 ~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~ 402 (416)
..++++..+..+++.+|.|.+.|+.|.+..+.+.+.....+.
T Consensus 399 siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~ 440 (477)
T TIGR01301 399 SIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP 440 (477)
T ss_pred HHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 889988887777554545588898887777776666544433
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-24 Score=206.18 Aligned_cols=336 Identities=13% Similarity=0.072 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCccc
Q 014880 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (416)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~ 116 (416)
........+.+|.+.++.|.|+.+.++..+.+.+...+.+|+.|+++||+||||. ++.+.+...++......
T Consensus 16 ~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~-l~~~~~~~~i~~~~~~~------- 87 (392)
T PRK10473 16 PAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPV-AIPGAALFIIASLLCSL------- 87 (392)
T ss_pred HHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHH-HHHHHHHHHHHHHHHHH-------
Confidence 3444455577888888889999999999999999999999999999999999886 56666666665544331
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 014880 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 196 (416)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~ 196 (416)
. .+...... . ..+.+++.+.......+++.|..+ +++|++..+..+....++..+++.++..+.
T Consensus 88 ~--~~~~~~~~-~---~~l~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~--------- 151 (392)
T PRK10473 88 A--ETSSLFLA-G---RFLQGIGAGCCYVVAFAILRDTLD-DRRRAKVLSLLNGITCIIPVLAPVLGHLIM--------- 151 (392)
T ss_pred h--CcHHHHHH-H---HHHHHhhhhHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 1 11122222 2 225566666666667778888774 688999999988888888777766655443
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014880 197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFY 276 (416)
Q Consensus 197 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 276 (416)
+..+|++.+.+.+++.++..++..+..||++.+++ +++++..+..++.+||++++...+...+..........+.|.+
T Consensus 152 -~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (392)
T PRK10473 152 -LKFPWQSLFYTMAAMGILVLLLSLFILKETRPARA-PAASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVL 229 (392)
T ss_pred -hCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCccc-CCccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 24579999998887777777666666677543322 2222234455677888887655554444444444455667888
Q ss_pred HHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 014880 277 VINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIA 355 (416)
Q Consensus 277 ~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 355 (416)
+.+++|.++.+.+.......++.+++.++.+++ +|+++| +.+.++..+..++...+...+ +.+.......+.+.+
T Consensus 230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g 305 (392)
T PRK10473 230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPR--TLMLTSQVLFLAAGITLALSP--SHAVSLFGITLICAG 305 (392)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 888889998888877777777888888887775 444443 666666666555555444443 222323333344444
Q ss_pred HHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 014880 356 NALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (416)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~ 405 (416)
.+...+......... .+++.| .++++.++.+.+|+.+++++.++++.
T Consensus 306 ~~~~~~~~~~~~~~~-~~~~~g--~~~~~~~~~~~~g~~~~~~l~~~~g~ 352 (392)
T PRK10473 306 FSVGFGVAMSQALGP-FSLRAG--VASSTLGIAQVCGSSLWIWLAAVLGI 352 (392)
T ss_pred HHHHhHHHHHHHhcc-Cccccc--HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 443333332221111 234445 88888999999999999999998874
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=212.15 Aligned_cols=337 Identities=17% Similarity=0.193 Sum_probs=233.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCC
Q 014880 32 GHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG 110 (416)
Q Consensus 32 g~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~ 110 (416)
..+..........+.+|.++.+ .|.|+.++|++.++..+...+.+|+.|+++||+||||. ++.+.+...++......
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-l~~~~~~~~~~~~~~~~- 81 (352)
T PF07690_consen 4 AFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRV-LIIGLLLFALGSLLLAF- 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHH-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-EeehhhhhhhHHHHhhh-
Confidence 3455666677777788845544 59999999999999999999999999999999999995 67777766666323211
Q ss_pred ccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 014880 111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (416)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~ 190 (416)
. .+.+ .... ...+.+++.+...+...+++.|..+ +++|++..+.......+|.++++.+++.+.
T Consensus 82 ------~--~~~~-~~~~---~~~l~g~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~--- 145 (352)
T PF07690_consen 82 ------A--SNFW-LLLI---ARFLLGIGSGFFSPASNALIADWFP-PEERGRAFGILSAGFSLGSILGPLLGGFLI--- 145 (352)
T ss_dssp ------H--CCHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHCCC-TCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred ------h--hhHH-HHhh---hccccccccccccccccccccccch-hhhhhhccccccchhhhhhhcccchhhhhh---
Confidence 1 1222 2222 2236778888888888999999986 479999999999999999988777665544
Q ss_pred cccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccc-ccCCCc---hHH----HHHHHHhhHHHHHHHHHHHHH
Q 014880 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-LRGNSH---ARI----SWAYWFKKILYYQVALVYMLT 262 (416)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~-~~~~~~---~~~----~~~~l~~~~~~~~~~l~~~~~ 262 (416)
+..+||+.+++.+++.++..++.....+|++.+++ ++++++ .++ .++.+++++.++...+..+..
T Consensus 146 -------~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (352)
T PF07690_consen 146 -------SYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLF 218 (352)
T ss_dssp -------CHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHH
T ss_pred -------hccccccccccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHH
Confidence 35679999999888887776643333333222221 111111 122 256777787766444455555
Q ss_pred HHHHHHHHHHHHHHHHhhcccc-hhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC-C
Q 014880 263 RLVVNVSQAYLAFYVINDLRMG-QSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP-M 339 (416)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~ 339 (416)
.........+.|.|+.+++|.+ ..+.+.+..+..+...++.++.+++ +|+++| +..........+....+.... .
T Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 296 (352)
T PF07690_consen 219 FFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR--RRLLIAILLLILGALGLLLLPFS 296 (352)
T ss_dssp HHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566678899999988889999 6777777777777777777777765 333333 333333333333333333332 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHH
Q 014880 340 NMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAV 397 (416)
Q Consensus 340 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~ 397 (416)
++....+...++.|++.+...+...++..+..|++++| .+.|+.+....+|..+||
T Consensus 297 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 297 SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRG--TAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHH--HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHCC
Confidence 34556666778899999998888999999999999988 899999999999999886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-24 Score=206.50 Aligned_cols=339 Identities=14% Similarity=0.076 Sum_probs=220.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCc
Q 014880 35 LNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC 114 (416)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~ 114 (416)
..+.......+.+|.+.++.|.|+.+++++.++..+...+++|+.|+++||+||||. +..+.....++......
T Consensus 19 ~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~-~~~~~~~~~~~~~~~~~----- 92 (394)
T PRK11652 19 VGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPV-ILVGMSIFILGTLVALF----- 92 (394)
T ss_pred HHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH-HHHHHHHHHHHHHHHHH-----
Confidence 334455555566787777889999999999999999999999999999999999887 55555555555433321
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 014880 115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT 194 (416)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~ 194 (416)
. .+.. .....+ .+.+++.+...+...++..|..+ +++|++..+....+..++..+++.+++.+.
T Consensus 93 --~--~~~~-~l~~~~---~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~------- 156 (394)
T PRK11652 93 --A--HSLT-VLIAAS---AIQGLGTGVGGVMARTLPRDLYE-GTQLRHANSLLNMGILVSPLLAPLIGGLLT------- 156 (394)
T ss_pred --H--ccHH-HHHHHH---HHHHhhhhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 1 1222 222222 24555555554555566666553 567888888877777777777766665544
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014880 195 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLA 274 (416)
Q Consensus 195 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 274 (416)
+..+||+.+.+.+++.++..+...+..||++.++ +++++.++.+++.+|||+++...+..+...........+.+
T Consensus 157 ---~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (394)
T PRK11652 157 ---TLFGWRACYLFLLLLGAGVTFSMARWMPETRPAD--ARRTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSG 231 (394)
T ss_pred ---hccChHHHHHHHHHHHHHHHHHHHHhCCccCccc--cchhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 2457999999887766665555555566643322 12223466778889999877655554444444555556677
Q ss_pred HHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH---hhcCCchhHHHHHHHHH
Q 014880 275 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGI---LILPMNMSAFMYVLAIF 351 (416)
Q Consensus 275 ~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l 351 (416)
.++.+.+|.++.+.+.......++.++++++.+++ .||.++..........++...+ ......+.+.......+
T Consensus 232 ~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (394)
T PRK11652 232 VLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRP---NKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAAL 308 (394)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 88888789988887777666666666777666554 5544222222222222221111 11122344555566678
Q ss_pred HHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 014880 352 VGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 352 ~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~~ 406 (416)
.+++.+...+...+...+..| |++| ...++.+....+|..+++.+.+.+..+
T Consensus 309 ~~~g~~~~~~~~~~~~~~~~~-~~~g--~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 309 FFFGAGMLFPLATSGAMEPFP-YLAG--TAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhcc-ccch--HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 888888888877777666655 4556 788888888899999999998877654
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-24 Score=206.94 Aligned_cols=369 Identities=14% Similarity=0.116 Sum_probs=274.8
Q ss_pred chhhhhhcccchHHHHH-HHHHHHHHHHHHHHh----CCC--------------------------hHHHHHHHHHHHHH
Q 014880 23 RWSVLYYGSGHMLNDIT-AACWFTYLLLFLTDI----GLS--------------------------PRGAAAVMLSGQIA 71 (416)
Q Consensus 23 ~~~~~~~~~g~~~~~~~-~~~~~~~l~~~~~~~----g~s--------------------------~~~~g~~~~~~~~~ 71 (416)
+|+.++|.+-+++++.. ......++|.|+++. +.. .+..+...++..+.
T Consensus 3 r~~i~~W~lyd~ans~f~~~i~t~~~p~~~~~~a~~~g~~~~~~~~~c~~~~~~c~~~~~g~~~~~~s~~~~~~sis~l~ 82 (477)
T PF11700_consen 3 RREIWSWALYDWANSPFATVIVTFFFPPYFQSLAREAGVLPGDPTQPCSDSDDDCVVPFFGSWIDTSSLWLYANSISGLL 82 (477)
T ss_pred hhHHHHHHHhHhhcccchhhhHHHHHHHHHHHHHHhcccccccccCcccccCCccccccccccccHhHHHHHHHHHHHHH
Confidence 56778888888888763 345567889988874 221 24567889999999
Q ss_pred HHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 014880 72 DGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMV 151 (416)
Q Consensus 72 ~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 151 (416)
.++..|+.|.++|+-||||.++.....+..++...++. ....+.+...+.+. +..+++...++.++++.
T Consensus 83 ~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~-------v~~~~~~~~~~l~i----ia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 83 QALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWF-------VSPGQWWLALVLFI----IANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHH-------hCcchHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 99999999999999999999887777766666544432 11223333333333 56688899999999999
Q ss_pred hccCCCccc-------------------------hhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHH
Q 014880 152 NCITLNSTS-------------------------RVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIA 206 (416)
Q Consensus 152 ~~~~~~~~~-------------------------r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (416)
+++++++++ |++.++.....+++|.++...+...+....+.. .+.....|..+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~--~~~~~~~r~~~ 229 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST--ASNTWAIRVAF 229 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--cccchhhhHHH
Confidence 999976544 289999999999999988776665554433321 22346679999
Q ss_pred HHHHHHHHHHHHHHHhhccCccccccccC-CC-------chHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014880 207 YSSIFIGCCFVGIFLSRTEEPRLKMGLRG-NS-------HARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI 278 (416)
Q Consensus 207 ~~~~~i~~~~~~~~~~~~~e~~~~~~~~~-~~-------~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 278 (416)
.+.++.-++..+..++.+||++.+++.++ +. +..+.+|++.|+|....+++.+++..-+.+.+......|..
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~ 309 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYAT 309 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888888655222111 11 23445566777777778888889888889999999999999
Q ss_pred hhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHH-HHHHHHHh-----hcCCchhHHHHHHHHH
Q 014880 279 NDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLW-VFCGAGIL-----ILPMNMSAFMYVLAIF 351 (416)
Q Consensus 279 ~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~l 351 (416)
+++|++..+...+..+..+.+++|+++.+++ +|++.|.|+++.++.++. .++...+. ....++.+.+++..++
T Consensus 310 ~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~ 389 (477)
T PF11700_consen 310 EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVL 389 (477)
T ss_pred HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHH
Confidence 9999999998888888888899999998877 344444346666666554 33322222 1123577788889999
Q ss_pred HHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 014880 352 VGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 352 ~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~~ 406 (416)
.|+..|..++...++..++.|+++++ .++|++++..+..+.+||.+.+.+...
T Consensus 390 ~G~~~G~~qs~sRs~~~~LiP~g~e~--efFgly~i~gk~ss~lGPll~g~i~~~ 442 (477)
T PF11700_consen 390 IGLFMGGIQSASRSLFSRLIPPGREA--EFFGLYAITGKASSWLGPLLFGLITDA 442 (477)
T ss_pred HHHHhhhHHHHHHHHHHHhCCCchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 899999999999999999888877543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-24 Score=208.21 Aligned_cols=343 Identities=12% Similarity=0.036 Sum_probs=224.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhC
Q 014880 30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (416)
Q Consensus 30 ~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~ 109 (416)
.+..+.............|.+.++.|.|+.++|++.+...+...+++++.|+++||+||||.+ ..+.+...++......
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~~~~~ 99 (406)
T PRK11551 21 FLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRIL-IVSVALFGLFSLATAQ 99 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH-HHHHHHHHHHHHHHHH
Confidence 344455555556666777877778899999999999999999999999999999999999984 4444444444333221
Q ss_pred CccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 014880 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (416)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~ 189 (416)
. .+.. ..... ..+.+++.+...+...+++.|..+ +++|++..++.+.+..+|..+++.++..+.
T Consensus 100 -------~--~~~~-~~~~~---~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-- 163 (406)
T PRK11551 100 -------A--WDFP-SLLVA---RLLTGVGLGGALPNLIALTSEAVG-PRLRGTAVSLMYCGVPFGGALASVIGVLAA-- 163 (406)
T ss_pred -------h--ccHH-HHHHH---HHHHHhhHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 1 1222 22222 235667777777777888888874 678999999999888888888766554332
Q ss_pred ccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccC-CCchHHHHHHHHhhH---HHHHHHHHHHHHHHH
Q 014880 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG-NSHARISWAYWFKKI---LYYQVALVYMLTRLV 265 (416)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~l~~~~---~~~~~~l~~~~~~~~ 265 (416)
+..+|++.+.+.+++.++..+......||++.++++++ +++.+...++.++++ ..+.+.+..++....
T Consensus 164 --------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (406)
T PRK11551 164 --------GDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIV 235 (406)
T ss_pred --------cccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 35679999988776666555555555677543222111 111112223333332 223333444444455
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHH
Q 014880 266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAF 344 (416)
Q Consensus 266 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (416)
.+....++|.|+.+ .|.+..+.+.......++.+++.++.+++ +|+++| +.+..+.+...++...+...+ +.+.
T Consensus 236 ~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~~~~~~~~~~~~~~~~~~~~--~~~~ 310 (406)
T PRK11551 236 LYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR--RVVLLIYAGILASLAALAAAP--SFAG 310 (406)
T ss_pred HHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHhcC--cHHH
Confidence 56667788988866 58888888888888888888888888776 344333 555544444444444333333 4455
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhc
Q 014880 345 MYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (416)
Q Consensus 345 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~ 404 (416)
+.+..++.|++.+...+...++..+..|++.+| ...|+.+....+|..+++.+.+.+.
T Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~g~~~~g~l~ 368 (406)
T PRK11551 311 MLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRG--TGVGAAVAVGRLGSMAGPLLAGQLL 368 (406)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhh--hhhhHHHHhhhHHHHHHhhhHhhhh
Confidence 555667778777777777777777888888888 6777777777777777777776654
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=213.90 Aligned_cols=349 Identities=9% Similarity=-0.038 Sum_probs=226.2
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHh
Q 014880 28 YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (416)
Q Consensus 28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~ 107 (416)
.+....+.+.+...+....+|.+.++.+.++.++|++.+...+...+++|+.|+++||+||||. +..+.+...++...+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~-l~~~~~~~~~~~~~~ 99 (417)
T PRK10489 21 AVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKL-ILLARGTCGLGFIGL 99 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceE-EEehHHHHHHHHHHH
Confidence 4445566777777888888999988887899999999999999999999999999999999987 444444444433222
Q ss_pred hCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 014880 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (416)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~ 187 (416)
.. . ......+.+ .....+ .+.+++.+...++..+.++++.+ +++|++..++......+|..+++.+++.+.
T Consensus 100 ~~---~-~~~~~~~~~-~l~~~~---~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~ 170 (417)
T PRK10489 100 AL---N-AFLPEPSLL-AIYLLG---LWDGFFGSLGVTALLAATPALVG-RENLMQAGAITMLTVRLGSVISPALGGLLI 170 (417)
T ss_pred HH---H-HHcCCCcHH-HHHHHH---HHHHHHHHHHHHHHhhhhhhccC-HHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 10 0 000111222 222222 24555566666667778888775 578899999988889999988888777666
Q ss_pred HhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccC--CCchHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014880 188 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--NSHARISWAYWFKKILYYQVALVYMLTRLV 265 (416)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 265 (416)
. ..+|++.+.+.++..++..+.. +..||++.++++++ .++.++.++..+|+|.++...+..++.. .
T Consensus 171 ~----------~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 238 (417)
T PRK10489 171 A----------AGGVAWNYGLAAAGTFITLLPL-LRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGLLT-M 238 (417)
T ss_pred H----------HHhhHHHHHHHHHHHHHHHHHH-HhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHHHH-H
Confidence 3 4578888877666555544433 44455332211111 1223345667788888665544443332 2
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHH
Q 014880 266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFM 345 (416)
Q Consensus 266 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (416)
......++|.|..+..|.+....+.+.....++.+++.++.+++.+..++ ++.+..+.++.+++...+.+. ++.+..
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~-~~~l~~~~~~~~~~~~~~~~~--~~~~~~ 315 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARP-GLLMLLSTLGSFLAVGLFGLM--PMWILA 315 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCc-chHHHHHHHHHHHHHHHHHcc--chHHHH
Confidence 34567788999988789998888888888888888888887665322111 345566655555554444333 355555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 346 YVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 346 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
.+..++.|++.+...+...++..+..|++.+| ..+|+.+....+|..+|+.+.+.+
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~g~~l~G~l 371 (417)
T PRK10489 316 VLCLALFGYLSAISSLLQYTLLQTQTPDEMLG--RINGLWTAQNVTGDAIGAALLGGL 371 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH--HHHHHHHHHHhhhHhHHHHHHHHH
Confidence 56677788888777666667777778888877 566666555555555554444433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-25 Score=213.59 Aligned_cols=346 Identities=11% Similarity=0.013 Sum_probs=212.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCC
Q 014880 31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG 110 (416)
Q Consensus 31 ~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~ 110 (416)
++.+...+........+|.+.++.|+|+.++|++.+...+...+++++.|+++||+|||+. +..+.+...++..+...
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-~~~~~~~~~~~~~~~~~- 107 (434)
T PRK11663 30 LGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYF-MGIGLIATGIINILFGF- 107 (434)
T ss_pred HHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchh-HHHHHHHHHHHHHHHHH-
Confidence 3333333333455677888888889999999999999999999999999999999999987 55566555555433211
Q ss_pred ccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 014880 111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (416)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~ 190 (416)
.+..+.....+ .+.+++.+...++..+++.++.+ +++|++..++.+.+..+|..+++.+.+.+.
T Consensus 108 ---------~~~~~~l~~~~---~l~g~~~g~~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~--- 171 (434)
T PRK11663 108 ---------SSSLWAFALLW---VLNAFFQGWGWPVCAKLLTAWYS-RTERGGWWAIWNTAHNVGGALIPLVVGAIA--- 171 (434)
T ss_pred ---------HhHHHHHHHHH---HHHHHHHHccchHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 11122222222 23455555555666777888774 678999999999999999988877766655
Q ss_pred cccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccc---c------c-----cCC----CchHHHHH-HHHhhHH
Q 014880 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---G------L-----RGN----SHARISWA-YWFKKIL 251 (416)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~---~------~-----~~~----~~~~~~~~-~l~~~~~ 251 (416)
+..+||+.+.+.+++.++..+...+..||++... + + +++ .+.++.++ ..+||+.
T Consensus 172 -------~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (434)
T PRK11663 172 -------LHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPY 244 (434)
T ss_pred -------HcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChH
Confidence 2468999999887776655444444455533210 0 0 000 01111122 2567788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhh-HHHHHHHHHHHHH
Q 014880 252 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL-KAYYSAGGVLWVF 329 (416)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~-~~~~~~~~~~~~~ 329 (416)
++.+.+..++..........++|.|+.+++|.+..+.+.......++..++.++.+++ +|+.+|. +...........+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~ 324 (434)
T PRK11663 245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILL 324 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHH
Confidence 7777776666666677778899999988889998888888787888888999988876 4442221 1211111111111
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 330 CGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
....+...+..+........+..|++.............+..+++.+| ...|+.+...++|..+++.+.+.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~~~p~~~g~l 396 (434)
T PRK11663 325 SVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAG--AATGFVGLFAYLGAALSGYPLAKV 396 (434)
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHH--hHHHHHHHHHHHHHHHhcccHHHH
Confidence 111222222222222222223333322211112223345666677777 777888888888887777665554
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.5e-26 Score=220.81 Aligned_cols=342 Identities=11% Similarity=-0.019 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccch
Q 014880 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (416)
Q Consensus 43 ~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (416)
.....|...+|+|+|+.+.|++.+++.+.+++++|+.|+++||+||||. +..+.+...+....... .+ ....+.
T Consensus 48 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~-l~~~~~~~~~~~~~~~~--~~---~~~~~~ 121 (467)
T PRK09556 48 FKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQF-LPFLLILSAICMLGFGA--SL---GSGSVS 121 (467)
T ss_pred hhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccch-HHHHHHHHHHHHHHHHH--HH---hcccch
Confidence 4455777777789999999999999999999999999999999999997 44444333333222110 01 011122
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHH
Q 014880 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY 202 (416)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~ 202 (416)
.+.....+ .+.|++.+...++..++++++.+ +++|+++.++...+..+|.++++.+...+..... ..+|
T Consensus 122 ~~~l~~~r---~l~G~~~~~~~~~~~~~i~~~~~-~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~-------~~~~ 190 (467)
T PRK09556 122 LGLMIALW---ALSGFFQSTGGPCSYSTITRWTP-RRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF-------DGHV 190 (467)
T ss_pred HHHHHHHH---HHHHHHHhccchHHHHHHHHHcC-ccceeeeEEeeecccchhhhHHHHHHHHHHHhhc-------cCcc
Confidence 22333333 35566666666667788888875 6789999999999999999888776655443211 1258
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccc-----c-----c---cC----CC--chHHHH-HHHHhhHHHHHHHHHHHHH
Q 014880 203 RWIAYSSIFIGCCFVGIFLSRTEEPRLKM-----G-----L---RG----NS--HARISW-AYWFKKILYYQVALVYMLT 262 (416)
Q Consensus 203 ~~~~~~~~~i~~~~~~~~~~~~~e~~~~~-----~-----~---~~----~~--~~~~~~-~~l~~~~~~~~~~l~~~~~ 262 (416)
+..+.+.+++.++..++.++..++++++. + . ++ ++ +.++.+ ++.+||+.++...+..++.
T Consensus 191 ~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 270 (467)
T PRK09556 191 IGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFL 270 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 88888777777666655555544432110 0 0 00 00 111222 3378999988888888877
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCch
Q 014880 263 RLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNM 341 (416)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (416)
.........|.|.|+++++|.+..+.+.......++.+++.++.|++ +|+++| +.......+..++...+.....++
T Consensus 271 ~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r--~~~~~~~~~~~~~~~~~~~~~~~~ 348 (467)
T PRK09556 271 YIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR--RALVACIALALIIFTLGVYQHATS 348 (467)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--chHHHHHHHHHHHHHHHHHHhcCc
Confidence 77777788999999999999999888887777778888999988876 444443 333333222222221222222234
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHH-HHHHHHHHHhhhcc
Q 014880 342 SAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKM-SCGIAVYVLQSYQS 405 (416)
Q Consensus 342 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~-g~~ig~~l~~~~~~ 405 (416)
.+...+..++.|+..............+..|++..| .+.|+.+....+ |..+++.+++.+-+
T Consensus 349 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g--~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 349 EYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIG--VANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHH--HHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 444445555666443222222223444777888888 888988888776 66777777776655
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-24 Score=206.74 Aligned_cols=339 Identities=14% Similarity=0.075 Sum_probs=227.3
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccc
Q 014880 40 AACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST 119 (416)
Q Consensus 40 ~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (416)
........|.+.++.|.|+.++|++.++..+...+++|+.|+++||+||||. +..+.+...++...... .
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~-~~~~~~~~~~~~~~~~~-------~-- 79 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKT-LAVFIVIWGVFTGLQAF-------A-- 79 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCccee-eHHHHHHHHHHHHHHHH-------H--
Confidence 3444455666556669999999999999999999999999999999999998 45555554444333221 1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchh
Q 014880 120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199 (416)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~ 199 (416)
.+.. .... ...+.+++.+...+...+++.|..+ +++|++..++.+....+|.++++.+...+. +.
T Consensus 80 ~~~~-~~~~---~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~----------~~ 144 (399)
T TIGR00893 80 GAYV-SLYI---LRVLLGAAEAPFFPGIILIVASWFP-ASERATAVSIFNSAQGLGGIIGGPLVGWIL----------IH 144 (399)
T ss_pred cCHH-HHHH---HHHHHHHHHHhhhhHHHHHHHHhCC-HHHHHHHHHHHHHhchHHHHHHHHHHHHHH----------Hh
Confidence 1222 2222 2236777777777788888888875 678999999999999999988877776555 24
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCcccccc-----cc---------------CCCchHHHHHHHHhhHHHHHHHHHH
Q 014880 200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-----LR---------------GNSHARISWAYWFKKILYYQVALVY 259 (416)
Q Consensus 200 ~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~-----~~---------------~~~~~~~~~~~l~~~~~~~~~~l~~ 259 (416)
.+||+.+.+.+++.++..+..++..+|++.+++ ++ ++++.+...++.+|+|+++...+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (399)
T TIGR00893 145 FSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQ 224 (399)
T ss_pred CCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHH
Confidence 579999988877777666655555555332110 00 0011123456788999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHH--HH--HHHHHHH
Q 014880 260 MLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGV--LW--VFCGAGI 334 (416)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~--~~--~~~~~~~ 334 (416)
++..........+.|.|+.++.|.+..+.+.......++.+++.++.+++ +|+++|.+........ .. ..+....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (399)
T TIGR00893 225 FLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMF 304 (399)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999889988888888888788888888888776 4555542111111111 11 1111111
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 014880 335 LILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~~ 406 (416)
.....++.+.......+.+++.+ ..+....+..+..|++.+| ...++.+....+|..+++.+.+.+.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~g~~~~~~i~g~l~~~ 373 (399)
T TIGR00893 305 ATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAG--LTGGLINSLGNLGGIVGPIVIGAIAAT 373 (399)
T ss_pred HhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHH--HHHHHHHHHHHHhhhhhhHHhhhhccC
Confidence 11111233333333333344444 5677777888888888888 788888888888888888777766544
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-24 Score=207.99 Aligned_cols=356 Identities=12% Similarity=0.054 Sum_probs=226.4
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhccc-----CCchhhHHhHH
Q 014880 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGS 97 (416)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~-----Grrk~~ll~~~ 97 (416)
+++...+.+-.+...+........+|.|+++.|.|..++|.+..+.... +.++++|.++||+ ||||+|++.+.
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~--~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~ 88 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAY--VFKFLWSPLMDRYTPPFLGRRRGWLLATQ 88 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHcccccCCCCchHHHHHHH
Confidence 3444445555566677777888899999999999999999974444332 6899999999999 99999888888
Q ss_pred HHHHHHHHHh-hCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHH
Q 014880 98 VLVAVSFSSV-FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN 176 (416)
Q Consensus 98 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~ 176 (416)
+...++...+ +. .+..+.++..... .+.+++.+..+++..++..|+.+ ++||++..++...+..+|.
T Consensus 89 i~~~~~~~~~a~~-------~~~~~l~~l~~~~----~l~~~~~a~~~i~~~a~~~~~~~-~~~rg~~~~i~~~g~~lG~ 156 (491)
T PRK11010 89 LLLLVAIAAMGFL-------EPGTQLRWLAALA----VVIAFCSASQDIVFDAWKTDVLP-AEERGAGAAISVLGYRLAM 156 (491)
T ss_pred HHHHHHHHHHHHc-------CCcchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcC-hhhhHHHHHHHHHHHHHHH
Confidence 8776665443 21 1112222222222 25566777888889999999975 6889999999999999999
Q ss_pred HHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCC--CchHHHHHHHHhhHHHHH
Q 014880 177 LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGN--SHARISWAYWFKKILYYQ 254 (416)
Q Consensus 177 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 254 (416)
++++.+...+.. ...|||..|++.+++.++..+..+ ..||++.+++++++ ++..+++++.+++++.+.
T Consensus 157 llg~~l~~~l~~---------~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 226 (491)
T PRK11010 157 LVSGGLALWLAD---------RYLGWQGMYWLMAALLIPCIIATL-LAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWL 226 (491)
T ss_pred HHHHHHHHHHHh---------cccCHHHHHHHHHHHHHHHHHHHH-hcCCCccccccccchhhhHHHHHHHHHcCcCHHH
Confidence 988777666552 134899999998877766655444 36775432111111 112346777888777665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHH-HHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHH
Q 014880 255 VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPA-IIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA 332 (416)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~ 332 (416)
..+..++..........+.+.|+.++.|.+..+.+.+.. ...++.+++.++.+++ +|+++| +.+.++..+.++...
T Consensus 227 ~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~--~~l~i~~~l~~l~~l 304 (491)
T PRK11010 227 ILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF--RALMIFGILQGVSNA 304 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHH
Confidence 555555555555556678888888888999998887763 4456788888888776 455544 444444443333322
Q ss_pred HHhh--cCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeecccccc--chhhhhHHHHHHHHHHHHHHHHHhhhc
Q 014880 333 GILI--LPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSG--CAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (416)
Q Consensus 333 ~~~~--~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G--~g~~~~~~~~~~~~g~~ig~~l~~~~~ 404 (416)
.+.. ...++.+.+....++..+..+...+...+...+.++++..| .|..++..+++..+++.+++.+.+.+|
T Consensus 305 ~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G 380 (491)
T PRK11010 305 GYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG 380 (491)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2211 11123333334445544444444444455555556666665 124444444455555555566666554
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-24 Score=204.29 Aligned_cols=348 Identities=14% Similarity=0.089 Sum_probs=210.9
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHH
Q 014880 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (416)
Q Consensus 27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~ 106 (416)
....++.+...........+++++.+|.|.|+.++|++.+.+.+...+++|+.|+++||+||||. +..+.....++...
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~-l~~~~~~~~~~~~~ 94 (402)
T TIGR00897 16 LWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKT-MMIGLLLWCVGHAA 94 (402)
T ss_pred hHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH-HHHHHHHHHHHHHH
Confidence 34556666667777777888999998889999999999999999999999999999999999997 55555555554332
Q ss_pred h-hCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHH-HHHHHHHH
Q 014880 107 V-FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN-LSLYAIAF 184 (416)
Q Consensus 107 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~-~l~~~~~~ 184 (416)
. ... ....+ .+.....+ .+.+++.+....+..+.+.+..+ +++|+++++..+...++|. ++++.++.
T Consensus 95 ~~~~~------~~~~~-~~~l~~~~---~i~G~g~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~g~~~~~ 163 (402)
T TIGR00897 95 FIVFG------LGHAN-YPLILLFY---GIRGLGYPLFAYSFLVWVVYNTK-QDNLSSAVGWFWAVYSIGIGVFGSYYSS 163 (402)
T ss_pred HHHHh------ccCcc-HHHHHHHH---HHHHcchHHHHhHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 100 00112 22222222 24556666555555566666654 6789999999998888886 45555554
Q ss_pred HHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccc---CCCchHHHHHHHHhhHHHHHHHHHHHH
Q 014880 185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR---GNSHARISWAYWFKKILYYQVALVYML 261 (416)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~l~~~~ 261 (416)
.+....+. ....|+..+... +..++..+..+|++++++++ +.++.++.+++++|||+++...+..++
T Consensus 164 ~l~~~~g~-----~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (402)
T TIGR00897 164 YAIPAFGE-----MNTLWSALAFVL-----TGGVIALFSNKDIFTPQHMQTREKFSELGKAATILFTNPNVLLGGMVRII 233 (402)
T ss_pred hcccccch-----HHHHHHHHHHHH-----HHHHHHHhccCCCCCcccccCCcchhhHHHHHHHHHcChhHHHHHHHHHH
Confidence 44422210 112244443322 11222223333322111111 112223446678999998877777777
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHH-HHHHHHHHHHHHHHhhc--
Q 014880 262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYY-SAGGVLWVFCGAGILIL-- 337 (416)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~-~~~~~~~~~~~~~~~~~-- 337 (416)
.....+...++.|.|+++ .|.+..+.+.+.....++..++.+..+++ +|+++| +.. ..+.....++...+...
T Consensus 234 ~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~--~~~~~~~~l~~~~~~~~l~~~~~ 310 (402)
T TIGR00897 234 NTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWM--NTVRWFGGVGCGIFTLALYYIPQ 310 (402)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788899988855 79988877777777777888888887776 344333 332 22222222222222211
Q ss_pred -CCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 338 -PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 338 -~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
..++.+..++..++.|++.+...+.. ....+. +++++| ..+|+.+....+|+.+++.+.+.+
T Consensus 311 ~~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~-~~~~~g--~~~g~~~~~~~lg~~~gp~i~g~l 373 (402)
T TIGR00897 311 HFGHSFAVALIIAIALGIFLAGYVPLA-AVFPTL-APKHKG--AAMSVLNLSAGLSAFLAPAIAVLF 373 (402)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHhh-CcchhH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344555566677787776654433 333333 344566 777888877777776666555544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=208.27 Aligned_cols=347 Identities=10% Similarity=0.040 Sum_probs=223.7
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHH
Q 014880 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF 104 (416)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~ 104 (416)
.+......+.....++...++++.|+++. |.|+.++|++.++..+...+.+|+.|+++||+||||. ++.+.+...++.
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~-~~~~~~~~~~~~ 87 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRY-MLLAITAFASGF 87 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchh-HHHHHHHHHHHH
Confidence 44556677778888889999999999875 9999999999999999999999999999999999887 555555555554
Q ss_pred HHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHH
Q 014880 105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 184 (416)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~ 184 (416)
..... . .+.+...+.+ .+.+.+.+.......+..+|..+ +++|++..++.+...++|..+++.+++
T Consensus 88 ~~~~~-------~--~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~lg~~igp~l~~ 153 (395)
T PRK10054 88 IAIPL-------V--NNVTLVVLFF----ALINCAYSVFSTVLKAWFADNLS-STSKTKIFSLNYTMLNIGWTVGPPLGT 153 (395)
T ss_pred HHHHH-------H--hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcC-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33211 1 1122111212 23444444445556677777764 678999999999999999998887776
Q ss_pred HHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHH
Q 014880 185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRL 264 (416)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 264 (416)
.+. ..+|+..+.+.+++.++..++..+..+|++++++ +++++ ....++.+|||+++...+..++...
T Consensus 154 ~l~-----------~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (395)
T PRK10054 154 LLV-----------MQSINLPFWLAAICSAFPLVFIQIWVQRSEKAIA-TETGS-VWSPSVLLQDKALLWFTCSGFLASF 220 (395)
T ss_pred HHH-----------HhccCcHHHHHHHHHHHHHHHHHHHHhccccccc-cchhh-hhhhhhhccCceehHHHHHHHHHHH
Confidence 554 2468888887776666655444444444332211 11111 2223678899998777766666656
Q ss_pred HHHHHHHHHHHHHHhh--cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcCCc
Q 014880 265 VVNVSQAYLAFYVIND--LRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMN 340 (416)
Q Consensus 265 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~ 340 (416)
.......+.+.|..+. .+.+....+.+.....+......+..+ ++.||+ |+.+..+..+..++...+.+.. +
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~ 296 (395)
T PRK10054 221 VSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVG---RRLNAANIRPLMTAGTLCFVIGLVGFIFSG-N 296 (395)
T ss_pred HHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHH---HHHccCCchhHHHHHHHHHHHHHHHHHHcc-h
Confidence 6555556677776533 344444455555444333333333333 334444 4555666655555554444332 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHH---HHHHHHHHHHHHHHhhhccc
Q 014880 341 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLS---FLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 341 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~---~~~~~g~~ig~~l~~~~~~~ 406 (416)
+.+...+..++.+++.+...|...+...+..|++.+| .+++..+ ++..+|+.+++.+.|+++.+
T Consensus 297 ~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~--~~~~~~~~~~~G~~~Gp~~~G~l~~~~g~~ 363 (395)
T PRK10054 297 SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKA--SYFSAQSLGWLGAAINPLVSGVILTTLPPW 363 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccce--ehHhHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 5555566778888888877777776777777877777 4555443 45667777777888887765
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-24 Score=210.31 Aligned_cols=333 Identities=12% Similarity=0.015 Sum_probs=196.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhh
Q 014880 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV 124 (416)
Q Consensus 45 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (416)
..+|. +.+.|+|+.+.|++.+...+..++++|+.|+++||+||||. ++.+.+..+++...... .+ ....+...
T Consensus 50 ~~~p~-l~~~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~-l~~~~~~~~i~~~~~~~--~~---~~~~~~~~ 122 (452)
T PRK11273 50 LAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILAAAVMLFMGF--VP---WATSSIAV 122 (452)
T ss_pred HhhHH-HHHcCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchh-HHHHHHHHHHHHHHHHh--hh---cccccHHH
Confidence 34554 44449999999999999999999999999999999999987 55555555555433321 01 00112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHH-HHHHHHHHHHhccccccCchhhHHH
Q 014880 125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS-LYAIAFIVFSVSTAKTHADLENQYR 203 (416)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l-~~~~~~~l~~~~~~~~~~~~~~~~~ 203 (416)
..... .+.+++.+...++..+.+.++.+ +++|++..++.+.+..+|..+ ++.....+. ...+||
T Consensus 123 ~~~~~----~l~gi~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~----------~~~gw~ 187 (452)
T PRK11273 123 MFVLL----FLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGLPPLLFLLGMA----------WFNDWH 187 (452)
T ss_pred HHHHH----HHHHHHHhccchHHHHHHHHhCC-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH----------HhccHH
Confidence 22222 24455555544555566677664 678999999888888777543 332221211 134899
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCcccc----ccc------------c--CCCchHHHH-HHHHhhHHHHHHHHHHHHHHH
Q 014880 204 WIAYSSIFIGCCFVGIFLSRTEEPRLK----MGL------------R--GNSHARISW-AYWFKKILYYQVALVYMLTRL 264 (416)
Q Consensus 204 ~~~~~~~~i~~~~~~~~~~~~~e~~~~----~~~------------~--~~~~~~~~~-~~l~~~~~~~~~~l~~~~~~~ 264 (416)
+.+++.+++.++..++..+..||+++. +++ + ++.+.++.+ +.++||+.++...+..++...
T Consensus 188 ~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 267 (452)
T PRK11273 188 AALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYL 267 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 999988777766655555555653321 000 0 000112222 346788888887777777777
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHH-HHHHHHHHHHHHHHHHhhcCCchh
Q 014880 265 VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKA-YYSAGGVLWVFCGAGILILPMNMS 342 (416)
Q Consensus 265 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 342 (416)
..+....|+|.|++++.|.+..+.+....+..++.+++.++.|++ +|+.++.++ ..+....+..++...+...+..+.
T Consensus 268 ~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~ 347 (452)
T PRK11273 268 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNP 347 (452)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccCh
Confidence 777788999999998889888777777777777788888888776 344222112 222222222333223323222333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHH-HHHHHh
Q 014880 343 AFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGI-AVYVLQ 401 (416)
Q Consensus 343 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~i-g~~l~~ 401 (416)
+...+..+..|...............+..|++.+| .+.|+.+....+|+.+ ++.+.+
T Consensus 348 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~~g~~v~g 405 (452)
T PRK11273 348 TVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGYLGGSVAASAIVG 405 (452)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhh--hHHHHHHHHHHHHHHHhhhhhHH
Confidence 33333344444433222222223445677888888 7777777666665443 344433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-24 Score=206.10 Aligned_cols=349 Identities=9% Similarity=0.027 Sum_probs=216.5
Q ss_pred CCchh-hhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHH-----HHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHH
Q 014880 21 VGRWS-VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRG-----AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG 94 (416)
Q Consensus 21 ~~~~~-~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~-----~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll 94 (416)
.++++ .....++.+.....+....+++|.|.+|.|.++.+ +|++.++..+...+.+|+.|+++||+||||. +.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~ 88 (408)
T PRK09874 10 INWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIM-LL 88 (408)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHH-HH
Confidence 33443 33455777788888888889999999998887654 5899999999999999999999999999887 55
Q ss_pred hHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHH
Q 014880 95 AGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV 174 (416)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~ 174 (416)
.+.+...++...... ..+ .+.....++ +.+++.+ ......+.+.+..+ +++|++..+.......+
T Consensus 89 ~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~---~~g~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (408)
T PRK09874 89 RSALGMGIVMVLMGL---------AQN-IWQFLILRA---LLGLLGG-FVPNANALIATQVP-RNKSGWALGTLSTGGVS 153 (408)
T ss_pred HHHHHHHHHHHHHHH---------Hhh-HHHHHHHHH---HHHHhhh-hHHhHHHHHHHhcC-HhhhhHHHHHHHHHHHH
Confidence 555555555433221 112 222222222 3343332 23344556666653 67899999998888888
Q ss_pred HHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHH
Q 014880 175 ANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQ 254 (416)
Q Consensus 175 g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 254 (416)
|..+++.+.+.+. +..+||+.+.+.+++.++..+..++..||++.+++++++.+ .++..+.+|+++++.
T Consensus 154 g~~~~~~~~~~l~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 222 (408)
T PRK09874 154 GALLGPLAGGLLA----------DSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLH-MREVVTSLKNPKLVL 222 (408)
T ss_pred HHHHHHHHHHHHH----------HHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhH-HHHHHHhCcCCchHH
Confidence 8888777776655 24679999988887777666666566666433222211112 222344567776543
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhcccchh---hhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHH
Q 014880 255 -VALVYMLTRLVVNVSQAYLAFYVINDLRMGQS---AKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWV 328 (416)
Q Consensus 255 -~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~~~~~~ 328 (416)
.....+...........+++.|..+..+.... ..+.+..+..++..++.+..+++ .||. ++.+..+.....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l---~dr~g~~~~~~~~~~~~~ 299 (408)
T PRK09874 223 SLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKL---GDRIGPEKILITALIFSV 299 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccccchhHHHHHHHHH
Confidence 23333333344445567788887765443221 12334444445555666655554 4443 355565655554
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 329 FCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
++.......+ +.+...+..++.|++.+...+...+...+..+++++| ..++..+..+.+|..+|+.+.+.+
T Consensus 300 ~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~g~~~gp~~~G~l 370 (408)
T PRK09874 300 LLLIPMSFVQ--TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAG--RIFSYNQSFRDIGNVTGPLMGAAI 370 (408)
T ss_pred HHHHHHHHhc--cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccce--eeehHHHHHHHHHHHhhHHHHHHH
Confidence 4444333333 4555566777889999888887777777777777777 566666666666666666555544
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-23 Score=201.70 Aligned_cols=341 Identities=9% Similarity=-0.024 Sum_probs=228.5
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHH
Q 014880 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF 104 (416)
Q Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~ 104 (416)
+.+.+..+.+.+.+...+....++...+|.|.++.+.+++.+.+.+...+.+|+.|+++||+||||. ++.+.....++.
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~v-l~~~~~~~~~~~ 82 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRV-MFIANGIKLLGC 82 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchh-hHHHHHHHHHHH
Confidence 3456778888888876666666666777779999999999999999999999999999999999998 555555554443
Q ss_pred HHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHH
Q 014880 105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 184 (416)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~ 184 (416)
..+.. . .+. . +...+.+++.+...+...++++|+.+ +|||++++++.+....+|.++++.+++
T Consensus 83 ~~~~~-------~--~~~----~---~~r~l~G~~~a~~~pa~~a~i~~~~~-~~~~~~a~~~~~~~~~~~~~~Gp~lgG 145 (393)
T PRK11195 83 LLMLF-------G--IHP----L---LAYGLVGIGAAAYSPAKYGILTELLP-GEKLVKANGWMEGSTIAAILLGTVLGG 145 (393)
T ss_pred HHHHH-------H--HHH----H---HHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33211 0 011 1 12235678888888888999999986 688999999999999999999988887
Q ss_pred HHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCC------chHHHHHHHHhhHHHHHHHHH
Q 014880 185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNS------HARISWAYWFKKILYYQVALV 258 (416)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~l~ 258 (416)
.+..+ .|+..+.+.+...++.. +..+..||++.++++++.+ +.++.+++++|+|.++.....
T Consensus 146 ~l~~~-----------~~~~~~~i~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (393)
T PRK11195 146 ALADP-----------HAEAALAVCALIYLLAA-LFNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAG 213 (393)
T ss_pred HHHHH-----------HHHHHHHHHHHHHHHHH-HHHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHH
Confidence 77632 36666655544433332 3334556543221111111 112345677888876654444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhh
Q 014880 259 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILI 336 (416)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~ 336 (416)
..+.+.........+|.|+.+.+|.++.+.+.......++.+++++..+++ .||. ++.+..+. +.......+.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l---~~~~~~~~~~~~g~-~~~~~~~~~~~ 289 (393)
T PRK11195 214 TTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARL---VTLETVLRVLPAGI-LMGLVVLLMAL 289 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH---hcCCcccchHHHHH-HHHHHHHHHHH
Confidence 434444445556667788888899999999988888888888888887665 3332 34455453 22222222222
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeecccc-ccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 337 LPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDL-SGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 337 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
.++.+......++.|++.+...+...+..++..|++. .| ...++.++.++++..++..+.+..
T Consensus 290 --~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g--~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 290 --QHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAG--HSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred --HhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccch--hHHHHHhHHHHHHHHHHHHHHHHH
Confidence 2345555566678888888877666666665544433 45 788899999999988888777655
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-24 Score=203.86 Aligned_cols=336 Identities=9% Similarity=-0.014 Sum_probs=214.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhh---HHhHHHHHHHHHHHhhC
Q 014880 33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIW---HGAGSVLVAVSFSSVFG 109 (416)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~---ll~~~~~~~~~~~~~~~ 109 (416)
.+......+...+++|.|++|.|.|+.++|++.+++.+...+.+|+.|+++||+|||+.. +...... .......
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~~~- 89 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAFWF- 89 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHHHH-
Confidence 344556678888999999999999999999999999999999999999999999995321 2211111 1111111
Q ss_pred CccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 014880 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (416)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~ 189 (416)
...+ .+.....+ .+.+.+.+...+...++..+. +++|++..+..+....+|..+++.+++.+..
T Consensus 90 --------~~~~-~~~l~i~~---~l~g~~~~~~~~~~~a~~~~~---~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~- 153 (382)
T PRK11128 90 --------GAHS-FWLLFVAI---GLFNLFFSPLVPLTDALANTW---QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS- 153 (382)
T ss_pred --------hccc-HHHHHHHH---HHHHHHHcccccHHHHHHHHH---HhhccCCcchHHHHHHHHHHHHHHHHHHHHH-
Confidence 1112 22222222 244555555555555666654 3456777777777788888888877777663
Q ss_pred ccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccc-cCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 014880 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHARISWAYWFKKILYYQVALVYMLTRLVVNV 268 (416)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 268 (416)
..|||..+++.++..++..+. .+..||+++++++ +++++.++++++++|||+++...+..++.......
T Consensus 154 ---------~~g~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 223 (382)
T PRK11128 154 ---------WFGEQAILWILTAGVASMLLG-QLLRPTIMPQGESRQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAA 223 (382)
T ss_pred ---------HcChhHHHHHHHHHHHHHHHH-HHccCCCCCccccccccccccchHHHHHcChhHHHHHHHHHHHHHHhHh
Confidence 458999888776544443332 3334443222111 11111245678899999988777766666666667
Q ss_pred HHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcCCchhHHHH
Q 014880 269 SQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMY 346 (416)
Q Consensus 269 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (416)
...+.|.|+.| .|.+..+.+.+..+..++.++..++.+++ .||+ ++.+..+.+..+++...+... ++.+.++
T Consensus 224 ~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l---~~r~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~ 297 (382)
T PRK11128 224 YYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRL---FRRWSARDLLLLSAICGVVRWGLMGST--TALPWLI 297 (382)
T ss_pred HHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHhh--hhHHHHH
Confidence 77888999854 78888878877776666666666665554 4444 366666666666665444433 4677777
Q ss_pred HHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHH-H----HHHHHHHHHHHHHhhhccc
Q 014880 347 VLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLS-F----LDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 347 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~-~----~~~~g~~ig~~l~~~~~~~ 406 (416)
+..++.|++.+...+....+..+.. +++.+ ...+..+ . +..+|+.+++.+.|.++..
T Consensus 298 ~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~ 359 (382)
T PRK11128 298 VIQILHCGTFTVCHLAAMRYIAARP-GSEVI--RLQALYSALAMGGSIAIMTVLSGFLYQHLGAG 359 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC-HhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 7888899998887777777655543 44445 4555544 3 3345667777777776543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=206.52 Aligned_cols=344 Identities=10% Similarity=0.016 Sum_probs=213.2
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHh
Q 014880 29 YGSGHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (416)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~ 107 (416)
.....+.....+....+++|.++++ .|+|+.+++++.++..+...+++++.|+++||+||||. +..+.+...++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~i~~~~~ 84 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYT-TTLSLLLLAIPCLWA 84 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHHHHH
Confidence 3444455566667777788865655 59999999999999999999999999999999999987 555666655554443
Q ss_pred hCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 014880 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (416)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~ 187 (416)
.. ... +.+ .....+ .+.+++.+. ..+..+++.+..+ +++|++..++.....++|..+++.+.+++.
T Consensus 85 ~~-------~~~-~~~-~~~~~~---~~~g~~~~~-~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 85 GL-------AVQ-SYS-VLLLLR---LFIGIAGGS-FASCMPWISFFFP-KKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred HH-------Hhh-hHH-HHHHHH---HHHHHhchh-hHhHHHHHHHhcC-HhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 21 110 222 222222 244444333 3455677778774 678999999988888888888887777776
Q ss_pred HhccccccCchhhHHHHHH-HHHHHHHHHHHHHHHhhccCccccccccCCC-----------chHHHHHHHHhhHHHHHH
Q 014880 188 SVSTAKTHADLENQYRWIA-YSSIFIGCCFVGIFLSRTEEPRLKMGLRGNS-----------HARISWAYWFKKILYYQV 255 (416)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~ 255 (416)
.......+.+...+||+.+ ...+++..+..++.+...+|++.+++++++. +..+..++.+++|+++..
T Consensus 151 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T TIGR00886 151 GSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWIL 230 (366)
T ss_pred HHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhH
Confidence 5432111111235799988 4434444444444344444432211111100 011145678888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHH
Q 014880 256 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI 334 (416)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~ 334 (416)
.+..++..........+.|.|+++.+|.++.+.+.+..+..+..+++.++.+++ +|+++| +.+..+......+...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~--~~~~~~~~~~~~~~~~~ 308 (366)
T TIGR00886 231 ALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA--RKLLMSFLGVAMGAFLV 308 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc--hhHHHHHHHHHHHHHHH
Confidence 777776666667778899999998899998888877777777788888877766 444443 44444444444443333
Q ss_pred hhcCCc--hhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHH
Q 014880 335 LILPMN--MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMS 392 (416)
Q Consensus 335 ~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g 392 (416)
.....+ +.+...+...+.++..+...+..++...+..+ +++| .++|+.+...++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g--~~~g~~~~~~~~g 365 (366)
T TIGR00886 309 VLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATG--AVSGLVGAIGNLG 365 (366)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcc--cHHHHHHHhccCC
Confidence 332222 44444444444555555544445555445444 5666 7788777666554
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-24 Score=205.60 Aligned_cols=361 Identities=8% Similarity=-0.033 Sum_probs=224.5
Q ss_pred CCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHH
Q 014880 21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV 100 (416)
Q Consensus 21 ~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~ 100 (416)
.+++......++-+.............|...+|.|+|+.++|++.+++.+..++++++.|+++||+||||. +..+.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~-~~~~~~~~ 83 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRW-IAGIMVLW 83 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHH-HHHHHHHH
Confidence 33444444444444444444555555664445569999999999999999999999999999999999997 55555555
Q ss_pred HHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHH
Q 014880 101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY 180 (416)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~ 180 (416)
.++..+... . .+ .+.....+ .+.|++.+...+...+.+.|+.+ +++|++..++.+.+..+|.++++
T Consensus 84 ~~~~~~~~~-------~--~~-~~~l~~~r---~l~G~~~~~~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~~~~ 149 (412)
T TIGR02332 84 GIASTATMF-------A--TG-PESLYLLR---ILVGIAEAGFLPGILLYLTFWFP-AYFRARANALFMIAMPVTMALGL 149 (412)
T ss_pred HHHHHHHHH-------h--cC-HHHHHHHH---HHHHHHHhhHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 555433321 1 12 22222222 35666666665666667788775 67899999999999999999888
Q ss_pred HHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccc------ccc---------------CC---
Q 014880 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM------GLR---------------GN--- 236 (416)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~------~~~---------------~~--- 236 (416)
.+++.+...-.. .+..+||+.+.+.+++.++..++.++++||+++++ +++ ++
T Consensus 150 ~~~~~l~~~~~~----~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (412)
T TIGR02332 150 ILSGYILALDGL----MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAF 225 (412)
T ss_pred HHHHHHHhCCCC----CCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhcccccccccccc
Confidence 877666532000 02468999999988887776666666667754211 000 00
Q ss_pred -C---chHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccchhhhhHHHHHHHHHHHHHHHHHHHH-H
Q 014880 237 -S---HARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIN-DLRMGQSAKALVPAIIYICSFIVSILLQEM-A 310 (416)
Q Consensus 237 -~---~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~ 310 (416)
+ ..++.+++++ ++.++...+.+++.....+....|+|.|+++ ..+.+..+.+.+.....++..++.++.+++ +
T Consensus 226 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~d 304 (412)
T TIGR02332 226 AHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSD 304 (412)
T ss_pred ccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhc
Confidence 0 0012344443 5667777777777777788888999999977 246677777777777788888888888776 3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHH
Q 014880 311 WTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDK 390 (416)
Q Consensus 311 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~ 390 (416)
|+.+| +........+..++.......+ +.........+.+++.....+..+....+..|++.+| .++|+.+....
T Consensus 305 r~~~r-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~a~g~~~~~~~ 379 (412)
T TIGR02332 305 RLKER-KHHTALPYLFAAAGWLLASATD--HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARA--IAIAVINATGN 379 (412)
T ss_pred ccCcc-HHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHH--HHHHHHHHhhh
Confidence 43333 2223333333333322222222 2222222222333333332333333344556777777 78899888899
Q ss_pred HHHHHHHHHHhhhccc
Q 014880 391 MSCGIAVYVLQSYQSK 406 (416)
Q Consensus 391 ~g~~ig~~l~~~~~~~ 406 (416)
+|+.+++.+.+..-+.
T Consensus 380 ~g~~~~p~~~g~i~~~ 395 (412)
T TIGR02332 380 IGSALSPFLIGILKDA 395 (412)
T ss_pred hhhhhhhhhccccccc
Confidence 9998988877665543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-23 Score=202.39 Aligned_cols=354 Identities=10% Similarity=0.093 Sum_probs=201.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHH-Hh---CCChHH---HHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHH
Q 014880 31 SGHMLNDITAACWFTYLLLFLT-DI---GLSPRG---AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (416)
Q Consensus 31 ~g~~~~~~~~~~~~~~l~~~~~-~~---g~s~~~---~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~ 103 (416)
++.+........ ..+..+++. +. +.+..+ .+.+.+...+...+++++.|+++||+||||. +..+.+.+.++
T Consensus 29 ~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~-l~~~~~~~~~~ 106 (432)
T PRK10406 29 SGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS-MLISVCMMCFG 106 (432)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHH
Confidence 344443333333 444444454 43 355554 3445555666666999999999999999997 56666666555
Q ss_pred HHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHH
Q 014880 104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (416)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~ 183 (416)
...... .|. ...........+.+.+.+.|++.+...+...+++.|..+ +++|++..+..+.+...|.+++..+.
T Consensus 107 ~~~~~~--~~~---~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p-~~~rg~~~~~~~~~~~~G~~~~~~~~ 180 (432)
T PRK10406 107 SLVIAC--LPG---YETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAV-EGRKGFYASFQYVTLIGGQLLALLVV 180 (432)
T ss_pred HHHHhh--cCC---chhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCC-CCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 444321 120 000001112223334457778888887888899999886 67899998888888888887776665
Q ss_pred HHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHH-H
Q 014880 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML-T 262 (416)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~-~ 262 (416)
..+.....+.. ...+|||+.|.+.++++++... .....||+++.+++ +++++.++++++|||+.+...+...+ .
T Consensus 181 ~~~~~~~~~~~--~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 255 (432)
T PRK10406 181 VVLQQTLEDAE--LREWGWRIPFALGAVLAVVALW-LRRQLDETSQQETR--ALKEAGSLKGLWRNRRAFIMVLGFTAAG 255 (432)
T ss_pred HHHHHhCCHHH--HhccchHHHHHHHHHHHHHHHH-HHhcCCCCchHHHh--hhcccccHHHHHhhHHHHHHHHHHHHHH
Confidence 44443332100 0246999999987776665433 23345554322111 11123357788899887765554443 3
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHh--hcCC
Q 014880 263 RLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGIL--ILPM 339 (416)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~ 339 (416)
....+....|+|.|+.++.|.+..+.+....+..+...++.++.|++ +|++|| +.+.++.++..+...... ....
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr--~~~~~~~~~~~~~~~~~~~~~~~~ 333 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRR--TSMLCFGSLAALFTVPILSALQNV 333 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch--HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56677788999999988889888777766666566666777776665 444444 444444333222222111 1111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHH-HHHHHHHHHHHHh
Q 014880 340 NMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFL-DKMSCGIAVYVLQ 401 (416)
Q Consensus 340 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~-~~~g~~ig~~l~~ 401 (416)
++.........+..+..+...+..+.+..|.+|+|.+| ...|+.+.. ..+.+...+.+..
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~--t~~g~~~~~g~~~~g~~~p~~~~ 394 (432)
T PRK10406 334 SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRA--LGVGLSYAVANALFGGSAEYVAL 394 (432)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccc--hhhhHHHHHHHHHHHhHHHHHHH
Confidence 23332222222233333333344555667788888877 555654433 3333334444333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-24 Score=204.43 Aligned_cols=344 Identities=10% Similarity=0.002 Sum_probs=215.2
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHH
Q 014880 26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (416)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~ 105 (416)
.+.+....+..........+.+|.+.+|.|.|++++|++.+...+...+++|+.|+++||+||||. +..+.....++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~ 83 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHI-LLFLVALCVIGNA 83 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHH-HHHHHHHHHHHHH
Confidence 345566666677777777888898888889999999999999999999999999999999999887 5556665655544
Q ss_pred HhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHH
Q 014880 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185 (416)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~ 185 (416)
+... . .+.+ .....+ .+.|++.+...+...+.+.+..+ +++|++..+....+..+|..+++.++..
T Consensus 84 l~~~-------~--~~~~-~l~~~r---~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 149 (382)
T PRK10091 84 MFTL-------S--SSYL-MLAIGR---LVSGFPHGAFFGVGAIVLSKIIK-PGKVTAAVAGMVSGMTVANLLGIPLGTY 149 (382)
T ss_pred HHHH-------h--CcHH-HHHHHH---HHHHhhhHHHHHHHHHHHHHhCC-hHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 4321 1 1222 222222 35666666555555566677664 5678888888888778887776665554
Q ss_pred HHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014880 186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLV 265 (416)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 265 (416)
+. +..+||+.+.+.+++.++..+..++..||+++++ +.+.++.+ +.+|+++.+......++....
T Consensus 150 l~----------~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 214 (382)
T PRK10091 150 LS----------QEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEA----KGGLREQF-HFLRSPAPWLIFAATMFGNAG 214 (382)
T ss_pred Hh----------hhccHHHHHHHHHHHHHHHHHHHHHhCCCCCccc----ccCHHHHH-HHhcChHHHHHHHHHHHHHHH
Confidence 43 2468999999988877666655555666643211 11222333 456777766555544444444
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHH
Q 014880 266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAF 344 (416)
Q Consensus 266 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (416)
......+.+.|+.+..|.++.+.+.+.....++.+++.++.+++ +|+++ ++.+..+..+.+++...+.... ++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~--~~~~~~~~~~~~i~~~~~~~~~-~~~~~ 291 (382)
T PRK10091 215 VFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSP--LRIAAVTDFIIVLALLMLFFFG-GMKTA 291 (382)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCc--hhHHHHHHHHHHHHHHHHHHHH-hhHHH
Confidence 44556677888888789998888888888888888999888776 33333 3556666655555544433322 23344
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhh
Q 014880 345 MYVLAIFVGIANALMMVTGI-SMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (416)
Q Consensus 345 ~~~~~~l~g~~~~~~~~~~~-~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~ 402 (416)
..+..++.+++.....+... ....+..+++..|.+......+.+..+|+.+++.+.|.
T Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~~ 350 (382)
T PRK10091 292 SLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMMLTL 350 (382)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHhHHHHHc
Confidence 44445555665544333222 22333334444442222233344444445555555554
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=205.92 Aligned_cols=343 Identities=12% Similarity=0.037 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCccc
Q 014880 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (416)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~ 116 (416)
...........|.+.++.|.|+.+.|++.++..+...+.+++.|+++||+||||. +..+.+...++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~------- 79 (379)
T TIGR00881 8 YLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVF-LPIGLILCAIVNLFFGF------- 79 (379)
T ss_pred HHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeeh-hHHHHHHHHHHHHHHHH-------
Confidence 3444455556666556669999999999999999999999999999999999987 55555555555444321
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHH-HHHHHHHhcccccc
Q 014880 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA-IAFIVFSVSTAKTH 195 (416)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~-~~~~l~~~~~~~~~ 195 (416)
. .+ .+..... ..+.+++.+...+...+++.|..+ +++|++..++...+..+|..+++. +...+.
T Consensus 80 ~--~~-~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-------- 144 (379)
T TIGR00881 80 S--TS-LWVMAAL---WALNGIFQGMGWPPCGRTVTKWFS-RSERGTWVSFWNCSHNVGGGLLPPLVLFGIA-------- 144 (379)
T ss_pred h--hh-HHHHHHH---HHHHHhhccccCCchHHHHHHhcC-HhhheeeEeehhccchhHHHHHHHHHHHHHH--------
Confidence 1 12 2222222 235666666777777888888875 678999999988888888888763 333322
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccc-----cc---cC-----------CCchHHHHHHHHhhHHHHHHH
Q 014880 196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM-----GL---RG-----------NSHARISWAYWFKKILYYQVA 256 (416)
Q Consensus 196 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~-----~~---~~-----------~~~~~~~~~~l~~~~~~~~~~ 256 (416)
...+||+.+.+.+++.++..+..++..+|++.++ ++ ++ .+..+..+++++|+|.++.+.
T Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (379)
T TIGR00881 145 --ELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYIS 222 (379)
T ss_pred --hcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHH
Confidence 2457999988887777666665555555532210 00 00 011223456778899888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHH-HHHHHHHHHHHH
Q 014880 257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSA-GGVLWVFCGAGI 334 (416)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~-~~~~~~~~~~~~ 334 (416)
+..++..........+.|.|+.++.|.++.+.+.......++.+++.++.+++ +|..+|.+..... ......++....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 302 (379)
T TIGR00881 223 LGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVY 302 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence 77777777777888899999999889998888888888888888888888776 3333221222221 122222222222
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 014880 335 LILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~~ 406 (416)
...+..+.+......++.|+......+.......+..|++++| .+.++.+....+|+.+++.+.+.+.+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~~~~~~~g~l~~~ 372 (379)
T TIGR00881 303 WLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAG--TAAGFVGFFAYLGGILAGLPLGYLADG 372 (379)
T ss_pred hcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhH--HHHHHHHHhhhhhhhhhhhhHHHHHHh
Confidence 2222234444444555566554444444455666778888888 788888888888888887777666543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-23 Score=201.47 Aligned_cols=346 Identities=11% Similarity=0.013 Sum_probs=215.8
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHH
Q 014880 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (416)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~ 101 (416)
+++........+...+...+..+++|.+.++. |.|+.++|++.+++.+..++.+|+.|+++||+||||. ++.+.+...
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~-l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKA-VVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcch-HHHHHHHHH
Confidence 44555677777888888888999999988664 9999999999999999999999999999999999998 555555444
Q ss_pred HHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHH
Q 014880 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (416)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~ 181 (416)
++...+... . ..... .........+.+.+.|++.+...+...+.+.+..+ +++|+++.++......+|.++++.
T Consensus 93 ~~~~~~~~~--~--~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~ 166 (399)
T PRK05122 93 LSGLLYLLA--G--LLAAW-PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVG-ALHTGRVISWNGIATYGALAIGAP 166 (399)
T ss_pred HHHHHHHHh--h--hhhcc-chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcC-hhhhccchhhhhhhhhHHHHHHHH
Confidence 432222110 0 00000 01111122233346777777777777777777764 678999999988888888888777
Q ss_pred HHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHH
Q 014880 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML 261 (416)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 261 (416)
++..+.. ..+|++.+.+..++.++..... +..+| .+++++++ .++++.+|+. +.......+
T Consensus 167 l~~~l~~----------~~g~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~----~~~~~~~~~~--~~~~~~~~~ 227 (399)
T PRK05122 167 LGVLLYH----------WGGLAGLGLLIMLLALLGLLLA-RPRPA--VPPVKGER----LPFRRVLGRV--WPYGMGLAL 227 (399)
T ss_pred HHHHHHH----------cccHHHHHHHHHHHHHHHHHHH-hcCCC--CCCCCccc----hhHHHHHHHH--HHHHHHHHH
Confidence 7766653 4578888776655544333222 22222 11111111 1233333321 222222233
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCc
Q 014880 262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMN 340 (416)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (416)
..........+.|.|+.+. |.+. .+.......++.+++.++.+++ +|+++ ++.+..+..+..++...+...+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~~~--~~~~~~~~~~~~~~~~~~~~~~-- 300 (399)
T PRK05122 228 ASIGFGTIATFITLYYAAR-GWDG--AALALTLFGVAFVGARLLFGNLINRLGG--LRVAIVSLLVEILGLLLLWLAP-- 300 (399)
T ss_pred HHHHHHHHHHHHHHHHHHc-cccc--chHHHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHhc--
Confidence 3344555567788887653 5532 3344445566667777776665 33333 3566666655555554444433
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 341 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 341 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
+.+..++..++.|++.+...+.......+..|++++| .++++++....+|..+++.+.+.+
T Consensus 301 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~~~~~~~g~l 361 (399)
T PRK05122 301 SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRG--AALGAYSVFLDLSLGITGPLAGLV 361 (399)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566678889998887766555555667778877 778887777777766666555544
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-24 Score=204.63 Aligned_cols=353 Identities=12% Similarity=0.076 Sum_probs=209.4
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHH
Q 014880 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF 104 (416)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~ 104 (416)
.+.+....+.....+....+++|.|+++. |.|+.++|++.++..+...+.+|+.|+++||+||||.++. +.....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~-~~~~~~~~~ 82 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLW-IISGLLVLF 82 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH-HHHHHHHHH
Confidence 34455556666777888889999999886 9999999999999999999999999999999999998443 322222221
Q ss_pred HHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHH
Q 014880 105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 184 (416)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~ 184 (416)
..... .. ..+... ........+.....+++++.......++..+.. +++++..+......++|.++++.+++
T Consensus 83 ~~~~~--~~--~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~g~~~g~~~~g 154 (396)
T TIGR00882 83 APFFI--YV--FGPLLQ-SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS---RNSNFEYGKARMFGCVGWALCASIAG 154 (396)
T ss_pred HHHHH--HH--hhhHHH-HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh---hhcccccchhhhhcccHHHHHHHHHh
Confidence 11100 00 000000 000111111122444555554444555555432 22333445555666777777766655
Q ss_pred HHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccc------cCCCchHHHHHHHHhhHHHHHHHHH
Q 014880 185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL------RGNSHARISWAYWFKKILYYQVALV 258 (416)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~l~ 258 (416)
.+. ..+|+..|.+.+++.++..++.+...+|+++++++ +++++..+++++++|||+++...+.
T Consensus 155 ~l~-----------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 223 (396)
T TIGR00882 155 ILF-----------SIDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLY 223 (396)
T ss_pred hhh-----------ccCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHH
Confidence 443 34789999888777776665554444443221110 1112234567889999997766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc---ccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHH
Q 014880 259 YMLTRLVVNVSQAYLAFYVINDL---RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI 334 (416)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~ 334 (416)
.++..........+.+.|+.+.. +.+....+....+..+...++.+..+++ +|+++| +.+.++..+.++.....
T Consensus 224 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~--~~l~~~~~l~~l~~~~~ 301 (396)
T TIGR00882 224 VVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK--NALLIAGTIMSVRIIGS 301 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHH
Confidence 55554555555567788876654 3444455666666666666666666655 344443 66666666656654443
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhH-HHHHHHHHHHHH----HHHHhhhc
Q 014880 335 LILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIA----VYVLQSYQ 404 (416)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~-~~~~~~~g~~ig----~~l~~~~~ 404 (416)
... ++.+.++...++.|++..........+..+..++|.++ ...+. .++..++|+.++ +++.+.+|
T Consensus 302 ~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a--t~~~~~~~~~~~lg~~~~~~l~G~l~~~~G 372 (396)
T TIGR00882 302 SFA--TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSA--TIYLIGFQFAKQLAMIFLSTLAGNMYDSIG 372 (396)
T ss_pred Hhc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEE--EeehHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 433 36666666777788887766666666666666777766 33333 345555555555 55555544
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-24 Score=202.99 Aligned_cols=326 Identities=12% Similarity=0.005 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCccccccc
Q 014880 41 ACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (416)
Q Consensus 41 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (416)
....+.+|...+|+|.|..++|++.+.+.+...+.+|+.|+++||+||||+ +..+.....++...... .|
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~-l~~~~~l~~~~~~~~~~--a~------- 95 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRS-VAISLLLIAVGALMREL--YP------- 95 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHH-HHHHHHHHHHHHHHHHH--Cc-------
Confidence 445577888888889999999999999999999999999999999999998 66666666666554421 01
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhh
Q 014880 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 200 (416)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~ 200 (416)
+ .+.....+ .+.|++.+...+...+++.+.. +++|+++++....+...|..+++.+++.+... ..
T Consensus 96 ~-~~~ll~~r---~l~Gig~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~---------~~ 160 (393)
T PRK09705 96 Q-SALLLSSA---LLGGVGIGIIQAVMPSVIKRRF--QQRTPLVMGLWSAALMGGGGLGAAITPWLVQH---------SE 160 (393)
T ss_pred c-hHHHHHHH---HHHHhHHHHHhhhhhHHHHHHc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHh---------cC
Confidence 1 22222223 3667777777777777777765 36799999998888888888888777666532 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014880 201 QYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND 280 (416)
Q Consensus 201 ~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 280 (416)
+||+.+...++..++.....+...++++. ++++++. ..++.+|+++.+.+.+..++....+.....+.|.|+.+
T Consensus 161 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~- 234 (393)
T PRK09705 161 TWYQTLAWWALPAVVALFAWWWQSAREVA-SSHKTTT----TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE- 234 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccCCCc----CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 78888766555444333322222222111 1111111 12345677777766666666666777788999999976
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH
Q 014880 281 LRMGQSAKALVPAIIYICSFIVSILLQEMA-WTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALM 359 (416)
Q Consensus 281 ~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 359 (416)
.|.+..+.+....+..++.+++.++.+++. |.++ |+.+..+..+..++...+...+. +.... ...+.|++.+..
T Consensus 235 ~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~--~~~~~~~~~l~~~~~~~~~~~~~-~~~~~--~~~l~g~g~g~~ 309 (393)
T PRK09705 235 IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDR--RKLLMLALVLQLVGFCGFIWLPL-QLPVL--WAMVCGLGLGGA 309 (393)
T ss_pred cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHHHHHHccc-hHHHH--HHHHHHHhccch
Confidence 699988888888888888899998887762 3322 35556665555555444433342 22222 234567777766
Q ss_pred HHhhhhhheeee-ccccccchhhhhHHHHHHHHHHHHH----HHHHhhhc
Q 014880 360 MVTGISMQNVLV-GEDLSGCAFVCGTLSFLDKMSCGIA----VYVLQSYQ 404 (416)
Q Consensus 360 ~~~~~~~~~~~~-~~~~~G~g~~~~~~~~~~~~g~~ig----~~l~~~~~ 404 (416)
.+.......+.. +++..| ..++..+....++..++ +++.|..|
T Consensus 310 ~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~~~~~gp~~~G~l~~~~g 357 (393)
T PRK09705 310 FPLCLLLALDHSVQPAIAG--KLVAFMQGIGFIIAGLAPWFSGVLRSISG 357 (393)
T ss_pred HHHHHHHHHhhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 665554444444 344555 55565555555555445 55555554
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-23 Score=197.67 Aligned_cols=332 Identities=11% Similarity=0.040 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccc
Q 014880 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (416)
Q Consensus 38 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~ 117 (416)
+..++..+.+|.+.++.|+|+.+++++.++..+...+++++.|+++||+||||. +..+.+...++...... .
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~~~i~~~~~~~-------~ 76 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPV-ILGGTLVFALAAVACAL-------A 76 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHH-HHHHHHHHHHHHHHHHH-------H
Confidence 445666788999998899999999999999999999999999999999999886 55566555555443321 1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCc
Q 014880 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197 (416)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~ 197 (416)
.+.. .... ...+.+++.+...++..+++.|..+ +++|++..++.+....+|..+++.++..+.
T Consensus 77 --~~~~-~~~~---~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---------- 139 (377)
T PRK11102 77 --QTID-QLIY---MRFLHGLAAAAASVVINALMRDMFP-KEEFSRMMSFVTLVMTIAPLLAPIIGGWLL---------- 139 (377)
T ss_pred --ccHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 1112 2222 2235667777777888888888874 678999999999988888888777766555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCC--CchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014880 198 LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGN--SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF 275 (416)
Q Consensus 198 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 275 (416)
+..+||+.+.+.+++.++..++..+..||++.++++++. ++..+++++.+|||+++...+...+..........+.|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (377)
T PRK11102 140 VWFSWHAIFWVLALAAILAAALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPF 219 (377)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 245799999888777776666555566664332221111 123345677888988776666665655555666667788
Q ss_pred HHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhc--CCchhHHHHHHHHHH
Q 014880 276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL--PMNMSAFMYVLAIFV 352 (416)
Q Consensus 276 ~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~ 352 (416)
++.++.|.++.+.+.+.....++.+++.++.+++ +|.++| +.+..+..+..+....+... ...+.+...+...+.
T Consensus 220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (377)
T PRK11102 220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGAL--NMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAF 297 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8888889998888888888888888888887765 444443 55555554433322222211 112333333334444
Q ss_pred HHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHH-HHHHHHHHH
Q 014880 353 GIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDK-MSCGIAVYV 399 (416)
Q Consensus 353 g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~-~g~~ig~~l 399 (416)
+.+.+...+.......+..| +..| ...++.+.... +|..+++.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~-~~~g--~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 298 VGCVSMISSNAMAVILDEFP-HMAG--TASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHHhhHHHHHHHhcccc-ccch--HHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555444 4555 55666554433 444444443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-23 Score=202.04 Aligned_cols=339 Identities=10% Similarity=0.005 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCccccccc
Q 014880 41 ACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (416)
Q Consensus 41 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (416)
....+++|.+.++.|+|+.+.+++.+...+...+++++.|+++||+|||+. +..+.+...++..+... . .
T Consensus 53 ~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~-~~~~~~~~~~~~~~~~~-------~--~ 122 (476)
T PLN00028 53 FAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYG-SAFLLMLTAPAVFCMSL-------V--S 122 (476)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHHHH-------h--c
Confidence 344456666767779999999999999999999999999999999999987 55555555555433211 1 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhh
Q 014880 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 200 (416)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~ 200 (416)
+.. .....+ .+.|++.+.. .+....+.++.+ +++|+++.++.....++|..+++.+.+.+...+.... .+...
T Consensus 123 s~~-~l~~~r---~l~G~~~~~~-~~~~~~i~~~~~-~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~-~~~~~ 195 (476)
T PLN00028 123 SAT-GFIAVR---FFIGFSLATF-VSCQYWMSTMFN-GKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG-APSFT 195 (476)
T ss_pred CHH-HHHHHH---HHHHHHHHhh-HHHHHHHHHhcC-hhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccchh
Confidence 222 222222 2444444432 334455677764 6789999999887777888777666655543322100 01235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccc--c-c-c---CCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014880 201 QYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM--G-L-R---GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYL 273 (416)
Q Consensus 201 ~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~--~-~-~---~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 273 (416)
+||+.+.+.+++.++..+..++..++++..+ + + + ++++..+.+++.+++++++.+.+.+++..........+.
T Consensus 196 gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNII 275 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHH
Confidence 8999999998888776666555544322111 0 0 1 111223455677888887777766666555555667789
Q ss_pred HHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhh----HH-HHHHHHHHHHHHHHHHhhcCCchhHHHHH
Q 014880 274 AFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL----KA-YYSAGGVLWVFCGAGILILPMNMSAFMYV 347 (416)
Q Consensus 274 ~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (416)
|.|+.++.|.+....+.+..+..++..++.++.|++ +|++||. ++ .......+..++...+ ...++.+....
T Consensus 276 p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~--~~~~~~~~~~~ 353 (476)
T PLN00028 276 AEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWL--GRANSLGAAIV 353 (476)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHh--cccchHHHHHH
Confidence 999988889998888888888888899999998887 5666553 11 2222222222222222 22224444444
Q ss_pred HHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHh
Q 014880 348 LAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (416)
Q Consensus 348 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~ 401 (416)
.+++.+++.+...+..+.+..+. .+|..| ..+|+.+....+|+.+++.+.+
T Consensus 354 ~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g--~~~g~~~~~g~lg~~i~~~l~~ 404 (476)
T PLN00028 354 VMILFSIFVQAACGATFGIVPFV-SRRSLG--VISGLTGAGGNVGAVLTQLLFF 404 (476)
T ss_pred HHHHHHHHHHHhhhhhcccCccc-Chhhch--hhhhhhhccccHHHHHHHHHHH
Confidence 55566666555544455544443 345666 7888888888899999998876
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-23 Score=198.73 Aligned_cols=347 Identities=11% Similarity=0.055 Sum_probs=208.6
Q ss_pred CchhhhhhcccchHHHHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHH
Q 014880 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV 100 (416)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~ 100 (416)
..+..+...++.+...+..++..+.+|.|+.+ .|.|+.++|++.+++.+...+.+|+.|+++||+||||+ ++.+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~-l~~~~~~~ 91 (392)
T PRK12382 13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRS-ALQGMLAC 91 (392)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHH-HHHHHHHH
Confidence 33444445556677777778888899988765 59999999999999999999999999999999999998 45544444
Q ss_pred HHHHHHh-hCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHH
Q 014880 101 AVSFSSV-FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 179 (416)
Q Consensus 101 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~ 179 (416)
.++.... .....+ .......+... +.+.+.|++.+...++..+.+.+..+ +|+|+++.++.+.+...|..++
T Consensus 92 ~~~~~~~~~~~~~~---~~~~~~~~~l~---~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~a~~~~~~~~~~g~~~g 164 (392)
T PRK12382 92 GLAGLAYLLAAILP---VSAPFKFALLV---VGRLILGFGESQLLTGALTWGLGLVG-PKHSGKVMSWNGMAMYGALAAG 164 (392)
T ss_pred HHHHHHHHhhhccc---cchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhCC-ccccchhhhHHHHHHHHHHHHH
Confidence 3332211 100001 00011112222 22236667777666666677778775 6889999999888888888887
Q ss_pred HHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHH
Q 014880 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVY 259 (416)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 259 (416)
+.+++.+.. ..+|++.+.+..+..++.... ....||.+. +++++++.++.++...+ + .+..
T Consensus 165 ~~~~~~l~~----------~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~-~-----~~~~ 225 (392)
T PRK12382 165 APLGLLLHS----------HFGFAALALTTMVLPLLAWAF-NGTVRKVPA--HAGERPSLWSVVGLIWK-P-----GLGL 225 (392)
T ss_pred HHHHHHHHh----------ccChHHHHHHHHHHHHHHHHH-HHhccCCCC--CcccCchHHHHHHHHHH-h-----HHHH
Confidence 777665552 457888766554443333222 122233211 11111122222222211 1 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC
Q 014880 260 MLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP 338 (416)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 338 (416)
.+..........+.|.|+.+. +.+. .+.......++.+++.++.+++ +|.++ |+.+..+..+.+++...+...+
T Consensus 226 ~l~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~--~~~~~~~~~~~~~~~~~~~~~~ 300 (392)
T PRK12382 226 ALQGVGFAVIGTFVSLYFASK-GWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGG--VKVAIVSLLVETVGLLLLWLAP 300 (392)
T ss_pred HHHHHHHhHHHHHHHHHHHhc-CCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeehHHHHHHHHHHHHHHHHcc
Confidence 223334445567778887653 5543 3334444555566777776665 33333 3556666666566655444433
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhc
Q 014880 339 MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (416)
Q Consensus 339 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~ 404 (416)
+.+...+..++.|++.+...+.......+..+++++| ...|+.+....+|..+++.+.+.+-
T Consensus 301 --~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~ig~~~~g~l~ 362 (392)
T PRK12382 301 --TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRG--TALGGYAAFQDIAYGVSGPLAGMLA 362 (392)
T ss_pred --cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777888888877776666666677778877 7777777777777766666665543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-23 Score=200.09 Aligned_cols=336 Identities=13% Similarity=0.027 Sum_probs=203.5
Q ss_pred CCChHHHHHHHHH-----HHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHH
Q 014880 55 GLSPRGAAAVMLS-----GQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISY 129 (416)
Q Consensus 55 g~s~~~~g~~~~~-----~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (416)
+.++++.+.+.+. ..+...+++|+.|+++||+||||. +..+.+...++...... .+ .......+....+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~ 99 (394)
T TIGR00883 26 PSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKT-LVITLLMMGIGTLLIGL--LP---SYATIGIWAPILL 99 (394)
T ss_pred CCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHH-HHHHHHHHHHHHHHHhh--CC---ChhhhHHHHHHHH
Confidence 3556677665543 334445688999999999999998 55555555555443321 11 0000001111122
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHH
Q 014880 130 CVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSS 209 (416)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 209 (416)
.+.+.+.|++.+...++..+++.|..+ +++|++..+..+.+..+|.++++.+...+....+... ....+||+.+.+.
T Consensus 100 ~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~--~~~~~w~~~~~~~ 176 (394)
T TIGR00883 100 LLARLIQGFSLGGEWGGAALYLAEYAP-PGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDA--LLEWGWRIPFLVS 176 (394)
T ss_pred HHHHHHHHhhccccccccHHHhhhcCC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH--hhccchHHHHHHH
Confidence 233346667777777777788888875 6789999999999999999888877665544332110 0246899999887
Q ss_pred HHHHHHHHHHHHhhccCcccccc-ccCCCchHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 014880 210 IFIGCCFVGIFLSRTEEPRLKMG-LRGNSHARISWAYWFKKIL--YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS 286 (416)
Q Consensus 210 ~~i~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~l~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 286 (416)
+++.++.... ....+|++..++ ++++++.+.++++.+|+++ ++......++..........+.|.|++++.|.+..
T Consensus 177 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 255 (394)
T TIGR00883 177 AVLVLIGLYL-RRNLEETPVFEKAQEKHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSAN 255 (394)
T ss_pred HHHHHHHHHH-HHhcCCChhHHHHHhccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 6665554433 234455332211 1112222344566677765 55555666666667777788999999888899888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHH-HHHHHH-hhcCCchhHHHHHHHHHHHHHHHHHHHhh
Q 014880 287 AKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWV-FCGAGI-LILPMNMSAFMYVLAIFVGIANALMMVTG 363 (416)
Q Consensus 287 ~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 363 (416)
+.+.......+...++.++.+++ +|+++| +.+.....+.. .+.... .....++.+......++.+++.+...+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 333 (394)
T TIGR00883 256 SALLVLMLSLILFFITIPLSGALSDRIGRR--PVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPM 333 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchH--HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhH
Confidence 88777777777788888887766 444443 44443333322 221222 22222355555566677788887777777
Q ss_pred hhhheeeeccccccchhhhhH-HHHHHH----HHHHHHHHHHhhhc
Q 014880 364 ISMQNVLVGEDLSGCAFVCGT-LSFLDK----MSCGIAVYVLQSYQ 404 (416)
Q Consensus 364 ~~~~~~~~~~~~~G~g~~~~~-~~~~~~----~g~~ig~~l~~~~~ 404 (416)
.+...+..|++.++ .+.++ .+.... +++.+++.+.++.+
T Consensus 334 ~~~~~~~~p~~~~~--~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 334 GSFLPELFPTEVRY--TGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred HHHHHHhCCcccee--eEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 78888888877776 33343 233333 44555556666555
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-23 Score=202.66 Aligned_cols=347 Identities=12% Similarity=0.019 Sum_probs=201.8
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHH
Q 014880 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (416)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~ 103 (416)
+......++.+.............|.+.++.|+|+.+.+++.++..+...+++|+.|+++||+|||+. +..+.+...++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~-l~~~~~~~~~~ 96 (426)
T PRK12307 18 NALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPL-MMWSIVAYSVG 96 (426)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHH
Confidence 33334444444444444444455565556679999999999999999999999999999999999887 55566655555
Q ss_pred HHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHH
Q 014880 104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (416)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~ 183 (416)
...... . .+ .+.....+ .+.|++.+...+...+++.|..+ +++|++..++...+..+|.++++.+.
T Consensus 97 ~~~~~~-------~--~~-~~~l~~~r---~l~G~g~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~lg~~~~~~l~ 162 (426)
T PRK12307 97 TGLSGL-------A--SG-VIMLTLSR---FIVGMGMAGEYACASTYAVESWP-KHLKSKASAFLVSGFGIGNIIAAYFM 162 (426)
T ss_pred HHHHHH-------H--hH-HHHHHHHH---HHHHHHHhhHHHHHHHHHHHhCC-HhHhhHhhhHHHHHHhHHHHHHHHHH
Confidence 433221 0 11 22222222 35667777766777788888875 67899999999888888888776555
Q ss_pred HHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccc----ccC--CC----chHHHHHHHHhhHHHH
Q 014880 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG----LRG--NS----HARISWAYWFKKILYY 253 (416)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~----~~~--~~----~~~~~~~~l~~~~~~~ 253 (416)
+.+. +..+||+.+.+.....++ .+......||++..++ +++ ++ ..+..+++++|++.++
T Consensus 163 ~~l~----------~~~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (426)
T PRK12307 163 PSFA----------EAYGWRAAFFVGLLPVLL-VIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFP 231 (426)
T ss_pred HHHc----------ccCCHHHHHHHHHHHHHH-HHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHH
Confidence 4443 246899998875433322 2222222344321100 000 00 0122567788888765
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHH
Q 014880 254 QVALVYM---LTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVF 329 (416)
Q Consensus 254 ~~~l~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~ 329 (416)
....... ......+....++|.|+.+ .|.++...+.......++.+++.++.+++ +++++| +.+..+.++..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~--~~~~~~~~~~~~ 308 (426)
T PRK12307 232 LTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLK--KTFSIGLLMSFL 308 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 4333222 2222333456788988876 48888777777777777888888887766 344443 556666555444
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHHH--HHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 330 CGAGILILPMNMSAFMYVLAIFVGIAN--ALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
....+...+.+.... ....+.+++. ....+.......+..|++.+| .+.|+......+|+.+++.+.+.+
T Consensus 309 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 309 FIFPLFRIPQDNYLL--LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRG--LGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred HHHHHHHHccccHHH--HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHh--hhhhHHHHHHhHHHHHHHHHHHHH
Confidence 433333333222222 2222333322 122233444556777887777 455554444444444444444333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-23 Score=197.71 Aligned_cols=344 Identities=11% Similarity=0.014 Sum_probs=215.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhC
Q 014880 30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (416)
Q Consensus 30 ~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~ 109 (416)
.+..+...+......+.+|...++.|.+..+.++..+++.+..++++++.|.++||+||||. ++.+.....++......
T Consensus 22 ~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~-l~~~~~~~~~~~~~~~~ 100 (413)
T PRK15403 22 ILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPV-LITGALIFTLACAATLF 100 (413)
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHH-HHHHHHHHHHHHHHHHH
Confidence 33334444444455555666666679999999999999999999999999999999999987 55556555555443321
Q ss_pred CccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 014880 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (416)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~ 189 (416)
. .+ .+.....+ .+.|++.+.......+.+.|..+ +++|++..++......+|..+++.++..+.
T Consensus 101 -------a--~~-~~~l~~~r---~l~Gi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~-- 164 (413)
T PRK15403 101 -------T--TS-MTQFLIAR---FIQGTSICFIATVGYVTVQEAFG-QTKGIKLMAIITSIVLVAPIIGPLSGAALM-- 164 (413)
T ss_pred -------c--CC-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 1 12 22323333 24455544433444566667654 577888888888888888888877776554
Q ss_pred ccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccc-CCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 014880 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVVNV 268 (416)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 268 (416)
+..+||+.|++.+++.++..+..++..||++.+++++ +.++..+.+++++|||+++...+...+.......
T Consensus 165 --------~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~ 236 (413)
T PRK15403 165 --------HFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMS 236 (413)
T ss_pred --------HhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 2458999999988877776665555567643322211 1122345678899999998877777777777777
Q ss_pred HHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhh---cCCchhHH
Q 014880 269 SQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI---LPMNMSAF 344 (416)
Q Consensus 269 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 344 (416)
...+.|.++++..|.++.+.++.......+..++..+.+++ ++..+ ++.......+..++...+.. ...++.+.
T Consensus 237 ~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~--~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~ 314 (413)
T PRK15403 237 WVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTE--PRFIWRAVPIQLVGLALLIVGNLLWPHVWLW 314 (413)
T ss_pred HHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence 77788999999889998888877665556666666665543 22111 12221111111112111111 11223333
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 345 MYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 345 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
.+...++.++|.+...+......... .....| .+.++.+..+..+..+++...+.+
T Consensus 315 ~~~~~~l~~~G~~~~~p~~~~~al~~-~~~~~G--~a~a~~~~~~~~~~~~~~~~~g~~ 370 (413)
T PRK15403 315 SVLGTSLYAFGIGLIFPTLFRFTLFS-NNLPKG--TVSASLNMVILMVMAVSVEIGRWL 370 (413)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcc-CCCCCc--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888877766433221 121235 666777777666666666655544
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-24 Score=202.98 Aligned_cols=338 Identities=12% Similarity=0.029 Sum_probs=219.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccC
Q 014880 34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP 113 (416)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~ 113 (416)
+...........+.|.+.++.|.++.++|++.++..+...+++++.|+++||+||||. +..+.+...++..+...
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~~~~~~~~~~~---- 101 (398)
T TIGR00895 27 LMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRV-LLWSILLFSVFTLLCAL---- 101 (398)
T ss_pred HHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHH-HHHHHHHHHHHHHHHHH----
Confidence 3333444445556676667779999999999999999999999999999999999887 55555555555433321
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 014880 114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193 (416)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~ 193 (416)
. .+ .+..... ..+.+++.+...+...+++.|..+ +++|++..+....+..+|..+++.+.+.+.
T Consensus 102 ---~--~~-~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------ 165 (398)
T TIGR00895 102 ---A--TN-VTQLLIL---RFLAGLGLGGLMPNLNALVSEYAP-KRFRGTAVGLMFCGYPIGAAVGGFLAGWLI------ 165 (398)
T ss_pred ---c--cc-hHHHHHH---HHHHhcccccchhhHHHHHHHHcC-HHhhchhHhhHhhHHHHHHHHHHHHHHHHh------
Confidence 1 11 2222222 235666777777777888888875 678999999999999999888877766555
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccc---c-c-----------------------c--cCCCchHHHHH
Q 014880 194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK---M-G-----------------------L--RGNSHARISWA 244 (416)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~---~-~-----------------------~--~~~~~~~~~~~ 244 (416)
+..+|++.+.+.+++..+...+.+...||++.. + + + ++++..++.++
T Consensus 166 ----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (398)
T TIGR00895 166 ----PVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFK 241 (398)
T ss_pred ----hcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHH
Confidence 245788888877655555555555555553210 0 0 0 00011122223
Q ss_pred HHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHH
Q 014880 245 YWFKKIL---YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYY 320 (416)
Q Consensus 245 ~l~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~ 320 (416)
.+++++. .....+..++..........+.| ++.++.|.++.+.+.......++.+++.++.+++ +++++| ..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 317 (398)
T TIGR00895 242 ALFQGKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR---VT 317 (398)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH---HH
Confidence 3333322 23333444455555566667778 5556778888888888888888888888888776 333332 22
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHH
Q 014880 321 SAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVL 400 (416)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~ 400 (416)
.....+..+....+.... ++.+..+...++.|++.+...+...++..+..|++.+| ...|+.+....+|..+++.+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~~g~~~~ 394 (398)
T TIGR00895 318 ALLLLLGAVFAVLVGSTL-FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRA--TGVGWAIGIGRLGAIIGPILA 394 (398)
T ss_pred HHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH--HHHHHHHHHHHHHHHHHHHhH
Confidence 333323232222222212 34555566778889999888888888888888888888 788888888999999999887
Q ss_pred hhh
Q 014880 401 QSY 403 (416)
Q Consensus 401 ~~~ 403 (416)
+.+
T Consensus 395 G~l 397 (398)
T TIGR00895 395 GYL 397 (398)
T ss_pred Hhc
Confidence 754
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-24 Score=204.90 Aligned_cols=351 Identities=10% Similarity=0.054 Sum_probs=203.7
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHH
Q 014880 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (416)
Q Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~ 103 (416)
..+.+....+...+.++...++++.|+++. |+|+.++|++.++..+...+.+|+.|+++||+||||+.++ +.....+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~-~~~~~~~~ 89 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLW-IISGLLVL 89 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH-HHHHHHHH
Confidence 444455566667777788899999999985 9999999999999999999999999999999999998443 32222222
Q ss_pred HHHhhCCccCcccccccchhhHHHHHHHHHH-HHHHHHHHHHhhhhhhhhccCC-CccchhHHHhHHHHHHHHHHHHHHH
Q 014880 104 FSSVFGGCMPCRILSTSTLKVETISYCVFAA-IFNVGWAATQVAHMSMVNCITL-NSTSRVVLTSCRNAFTMVANLSLYA 181 (416)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~al~~~~~~-~~~~r~~~~~~~~~~~~~g~~l~~~ 181 (416)
....+. ..... .+. ...+... +.++..+...........++.+ ..++|++..+.......+|..+++.
T Consensus 90 ~~~~~~-------~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~ 159 (420)
T PRK09528 90 FGPFFI-------YVFAP-LLQ--YNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAF 159 (420)
T ss_pred HHHHHH-------HHHHH-HHH--HHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHH
Confidence 111110 00000 000 0000000 1111122211222222222221 1234555666667777788888777
Q ss_pred HHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccc---c-c--cCCCchHHHHHHHHhhHHHHHH
Q 014880 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---G-L--RGNSHARISWAYWFKKILYYQV 255 (416)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~---~-~--~~~~~~~~~~~~l~~~~~~~~~ 255 (416)
+++.+. ..+|++.+++.+++.++..+..++..+|+++++ + + ++++...+..++.+|||+++.+
T Consensus 160 ~~g~l~-----------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 228 (420)
T PRK09528 160 IAGILF-----------NINPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFL 228 (420)
T ss_pred HHHHHH-----------hcCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEee
Confidence 666554 236788888777666665555544444432221 0 0 1111223445678889887655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc---ccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHH
Q 014880 256 ALVYMLTRLVVNVSQAYLAFYVINDL---RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG 331 (416)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~ 331 (416)
.+..............+.|.|+.+.. +.+..+.+.+..+..+...++.++.+++ +|+++| +.+..+..+..++.
T Consensus 229 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~~~~~~~l~~~~~ 306 (420)
T PRK09528 229 VLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAK--NALLLAGTIMAVRI 306 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHH
Confidence 55444444444445556777766543 4454566777777777777777777765 444443 66666666666655
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhH-HHHHHHHHHHHHHHHHhhh
Q 014880 332 AGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~-~~~~~~~g~~ig~~l~~~~ 403 (416)
.++.+.+ +++.++...++.+++.+...+....+..+..|+|.++ ..++. .++...+|..+++.+.+.+
T Consensus 307 ~l~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~~~lg~~ig~~~~G~l 375 (420)
T PRK09528 307 IGSGFAT--GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSA--TIYLVGFQFAKQLGAVFLSTLAGNL 375 (420)
T ss_pred HHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccee--eeeeehHHHHHHHHHHHHHHHHHHH
Confidence 5554443 5666666677888888777666667777777777766 33333 3444555554444444433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-22 Score=194.22 Aligned_cols=345 Identities=13% Similarity=0.055 Sum_probs=201.0
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHH
Q 014880 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (416)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~ 102 (416)
...+.+-.+.+...+......++++.|+++. |.|++++|++.+...+...+.+++.|.++||+||||.+++.+.+...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~ 94 (393)
T PRK15011 15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVL 94 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 3445566667888888888999999998775 999999999988887877777777777799999999855555544433
Q ss_pred HHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccch--hHHHhHHHHHHHHHHHHHH
Q 014880 103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSR--VVLTSCRNAFTMVANLSLY 180 (416)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r--~~~~~~~~~~~~~g~~l~~ 180 (416)
+..+... ..+.+...+..+ +.+...+...+...++..+..+ +++| +..+++.+.+.++|.++++
T Consensus 95 ~~~~~~~---------~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lg~~~g~ 160 (393)
T PRK15011 95 ACTLFAW---------NRNYFVLLFVGV----FLSSFGSTANPQMFALAREHAD-KTGREAVMFSSFLRAQVSLAWVIGP 160 (393)
T ss_pred HHHHHHH---------hhHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHHHHhh
Confidence 3322210 011221111111 2332233344444566666543 2333 3445777778888888887
Q ss_pred HHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHH-HHHHHHHH
Q 014880 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL-YYQVALVY 259 (416)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~l~~ 259 (416)
.+++.+. +..|||..|.+.+++.++..+..++..||.+.++++++ ++ .+. ..++++ .+......
T Consensus 161 ~i~~~l~----------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~---~~~~~~~~~~~~~~~ 225 (393)
T PRK15011 161 PLAYALA----------MGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT-GT-LEA---PRRNRRDTLLLFVIC 225 (393)
T ss_pred HHHHHHH----------HhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc-cc-ccc---cccccccHHHHHHHH
Confidence 7776665 24589999998887777776666666676432221111 11 111 122322 23233333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC
Q 014880 260 MLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP 338 (416)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 338 (416)
............+.|.|+++++|.++.+.+.+.....+..+++.++.|++ +|+++| +.+..+.....+........
T Consensus 226 ~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~--~~~~~~~~~~~~~~~~~~~~- 302 (393)
T PRK15011 226 TLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKR--FLMRVAAVAGVCFYAGMLMA- 302 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHH-
Confidence 33334444556788999988889998887776666556666777777765 444444 45555544433333222222
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHH----HHHHHHHHHhhhc
Q 014880 339 MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKM----SCGIAVYVLQSYQ 404 (416)
Q Consensus 339 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~----g~~ig~~l~~~~~ 404 (416)
++.+..++..++.+++.+...+....+..+..|++ +| .+.+.++....+ |+.+++.+.++++
T Consensus 303 -~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g--~~~~~~~~~~~lg~~~g~~l~G~i~~~~g 368 (393)
T PRK15011 303 -HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-AG--SATTLYTNTSRVGWIIAGSLAGIVAEIWN 368 (393)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444555555555554444444445555543 55 455555444444 4455555555443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-22 Score=193.94 Aligned_cols=350 Identities=11% Similarity=-0.030 Sum_probs=224.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccC
Q 014880 34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP 113 (416)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~ 113 (416)
+...+..+...+.+|.+.++.|+|+.+.|++.+...+...+.+|+.|++.||+||||. +..+....+++..+.. +
T Consensus 13 ~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~-~~~g~~l~~~g~~l~~----~ 87 (410)
T TIGR00885 13 ALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAG-ILLGLFLYALGAFLFW----P 87 (410)
T ss_pred HHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHHHHHH----H
Confidence 4445555666778888877779999999999999999999999999999999999987 6666666666654432 1
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 014880 114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193 (416)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~ 193 (416)
....+..+.+. ....+.+++.+..+++.++.+.+..+ +++|++..+..+...++|..+++.+...+.......
T Consensus 88 ---~~~~~~~~~~l---~~~~l~G~g~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~ 160 (410)
T TIGR00885 88 ---AAEIMNYTLFL---VGLFILTAGLGFLETAANPYILVMGP-ESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPH 160 (410)
T ss_pred ---HHhhccHHHHH---HHHHHHHhhHHHHHhhhhHHHHHHCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 11111122222 22236778888888888888877764 567888899999999999999988887776432110
Q ss_pred cc----------------CchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHH
Q 014880 194 TH----------------ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVAL 257 (416)
Q Consensus 194 ~~----------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 257 (416)
.. ..+..+||+++.+.+++.++..++.. ..++++.+++++++++.++++++++|+|+++...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (410)
T TIGR00885 161 QSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKMPALNHSDAKQISFSASLSRLARIRHYREGVI 239 (410)
T ss_pred chhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCccccccccchhhHHHHHhChhHHHHHH
Confidence 00 01235799999988877666554432 23333222111222223345567899999887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-ccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHh
Q 014880 258 VYMLTRLVVNVSQAYLAFYVINDL-RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGIL 335 (416)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~ 335 (416)
..++.........++++.|..+.. +.+....+...........+|.++.+++ +|+.+| +.+.++.....++.++..
T Consensus 240 ~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~--~~l~i~~~~~~~~~ll~~ 317 (410)
T TIGR00885 240 AQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH--KVLMAYAIIGMALCLGSI 317 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHH
Confidence 777766666677789999986532 3333333333333344566777777665 444444 566666666555555555
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 014880 336 ILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (416)
Q Consensus 336 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~ 405 (416)
+.+ +.. ......+.|+..+..+|...+...+..+++... ....+.. ..+|+.+.|.+.+.+.+
T Consensus 318 ~~~--~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~--~s~~l~~--~~~Gga~~p~l~G~~~d 380 (410)
T TIGR00885 318 FAG--GHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKY--GAAGLVM--AIIGGGIVPPLQGFIID 380 (410)
T ss_pred HcC--ChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--hHHHHHH--HHhccchHHHHHHHHHH
Confidence 443 222 245667888899898999988887777766643 1112111 22666666666665555
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-22 Score=192.51 Aligned_cols=334 Identities=11% Similarity=0.029 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCccc
Q 014880 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (416)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~ 116 (416)
........+.+|.+.++.|.|++++|++.++..+...+++++.|+++||+||||. +..+.....++......
T Consensus 19 ~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~------- 90 (401)
T PRK11043 19 FLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPV-LLAGLSLFALGSLGMLW------- 90 (401)
T ss_pred HHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHH-HHHHHHHHHHHHHHHHH-------
Confidence 3344444455555566679999999999999999999999999999999999987 55555555554433221
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 014880 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 196 (416)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~ 196 (416)
. .+ .+.....+ .+.+++.+...+...+++.|..+ ++++++..+.......++..+++.+++.+.
T Consensus 91 ~--~~-~~~l~~~~---~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~--------- 154 (401)
T PRK11043 91 V--ES-AAQLLVLR---FVQAVGVCSAAVIWQALVIDRYP-AQKANRVFATIMPLVALSPALAPLLGAWLL--------- 154 (401)
T ss_pred h--cC-HHHHHHHH---HHHHhhhHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 1 12 22222222 24555555555566677787764 456777777666666777777766665554
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014880 197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFY 276 (416)
Q Consensus 197 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 276 (416)
+..+||+.+.+.+++.++..+..++..+| +.++ ++++.++.+++++|+|+++...+...+..........+.|.|
T Consensus 155 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 229 (401)
T PRK11043 155 -NHFGWQAIFATLFAITLLLILPTLRLKPS-KKAR---KQSQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFI 229 (401)
T ss_pred -hcCChHHHHHHHHHHHHHHHHHHHHcCCC-CCcc---ccchHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 24589999988877776666554443333 2211 112234567888999987765555555445555566778888
Q ss_pred HHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHH---HHhhcCCchhHHHHHHHHHH
Q 014880 277 VINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA---GILILPMNMSAFMYVLAIFV 352 (416)
Q Consensus 277 ~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~ 352 (416)
+.+ .|.+..+.+.......++..++.+..+++ +|+++| +..........++.. .......++.+...+...+.
T Consensus 230 ~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (401)
T PRK11043 230 LEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGE--QLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVM 306 (401)
T ss_pred HHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 754 68888877776665566667777766654 444443 333333222222222 12222223444445556677
Q ss_pred HHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 014880 353 GIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (416)
Q Consensus 353 g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~ 405 (416)
+++.+..++.......+..| +.+| .+.++.+..+..++..++.+.+.+.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~-~~~g--~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 307 AAANGAIYPIVVAQALRPFP-QATG--KAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHHHHHHHHHHHhhhCc-ccCh--HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 88888887776666554444 3556 78888888888888888888877754
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-22 Score=197.38 Aligned_cols=344 Identities=11% Similarity=0.073 Sum_probs=200.3
Q ss_pred HHHHHHHHH-h--CCChHHHHHHH-----HHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCccc
Q 014880 45 TYLLLFLTD-I--GLSPRGAAAVM-----LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (416)
Q Consensus 45 ~~l~~~~~~-~--g~s~~~~g~~~-----~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~ 116 (416)
...+.+..+ . +.++. .+++. ++..+...+++++.|+++||+||||. +..+.....++..+... .|.
T Consensus 43 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~-l~~~~~~~~~~~~~~~~--~~~-- 116 (438)
T PRK09952 43 ITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM-LMLTVWMMGIATALIGL--LPS-- 116 (438)
T ss_pred HHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHhc--CCc--
Confidence 344445543 3 67776 45543 35556677888999999999999998 55566555555444321 120
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 014880 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 196 (416)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~ 196 (416)
.....++....+.+.+.+.|++.+...+...+++.|..+ +++|++..+..+.+..+|.+++..+...+....+...
T Consensus 117 -~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p-~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~-- 192 (438)
T PRK09952 117 -FSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP-KNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQ-- 192 (438)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH--
Confidence 000011112223334457778888777777788888876 5789999888888888888887666655554433111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccc----cCCCchHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHH
Q 014880 197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL----RGNSHARISWAYWFKKILYYQVAL-VYMLTRLVVNVSQA 271 (416)
Q Consensus 197 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~~~~~~~~~ 271 (416)
...++||+.|++.+++.++.. ......||+++..++ +++++.....+.++|+++.+.... ..++.....+....
T Consensus 193 ~~~~gWr~~f~~~~~~~l~~~-~l~~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T PRK09952 193 FLSWGWRIPFLFSIVLVLIAL-WVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTA 271 (438)
T ss_pred hhccChHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHHhhcccccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Confidence 024799999998776654433 223345554321111 011111112234667777555443 34455566677788
Q ss_pred HHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhh-c-CCchhHHHHHH
Q 014880 272 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI-L-PMNMSAFMYVL 348 (416)
Q Consensus 272 ~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~ 348 (416)
+.|.|+.+++|.+......+..+..+...++.++.+++ +|++|| +.+..+.++.+++...+.. . ..++.+..+..
T Consensus 272 ~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (438)
T PRK09952 272 FALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR--RVYITGALIGTLSAFPFFMALEAQSIFWIVFFS 349 (438)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 99999988888887654444444455566677777765 444444 5555555444433322221 1 22233443444
Q ss_pred HHHHHHHHHHHHHhhhhhheeeeccccccchhhhhH-HHHHHHHHHHHHHHHHhhh
Q 014880 349 AIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 349 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~-~~~~~~~g~~ig~~l~~~~ 403 (416)
.++.+++.+...+..+++..|.+|.+.++ ...++ ++++..+|++++|.+.+.+
T Consensus 350 ~~l~~~~~~~~~~~~~~~~~e~~p~~~r~--tg~g~~~~~~~~lgg~~~p~i~g~l 403 (438)
T PRK09952 350 IMLANIAHDMVVCVQQPMFTEMFGASYRY--SGAGVGYQVASVVGGGFTPFIAAAL 403 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCcchhH--HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777888877765 33333 2344556666666555544
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-23 Score=195.97 Aligned_cols=340 Identities=13% Similarity=0.067 Sum_probs=209.1
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHH
Q 014880 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (416)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~ 103 (416)
+..+....+.+...+......+++|.|.++.|.|+.++|++.+.+.+...+++|+.|+++||+||||. +..+.+...++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~-~~~~~~~~~~~ 84 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRS-YYLASLIFAAG 84 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34566678888888888899999999999999999999999999999999999999999999999997 55555555555
Q ss_pred HHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHH
Q 014880 104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (416)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~ 183 (416)
...... . .+.. .....+ .+.|++.+...+...+.+.+..+ +++|++..+..+.+.++|..+++.++
T Consensus 85 ~~~~~~-------~--~~~~-~l~~~~---~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~ 150 (381)
T PRK03633 85 CAGLGL-------M--VGFW-SWLAWR---FVAGIGCAMIWVVVESALMCSGT-SRNRGRLLAAYMMVYYLGTVLGQLLV 150 (381)
T ss_pred HHHHHH-------h--ccHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433321 1 1222 222222 35666666665555555556554 56899999999998999988877776
Q ss_pred HHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHH
Q 014880 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTR 263 (416)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 263 (416)
..+..... ....|+...... ......+...+|+ ++++++ ++++++.+|||.++......+...
T Consensus 151 ~~l~~~~~------~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 213 (381)
T PRK03633 151 SKVSTELM------SVLPWVTGLVLA-----AILPLLFTRILNQ--QAENHD----STSIWPMLKLRQARLGVNGCIISG 213 (381)
T ss_pred hccccccc------chHHHHHHHHHH-----HHHHHHHhcccCC--CCCCCC----CCCHHHHHHhcchHHHHHHHHHHH
Confidence 65543211 122343222111 1111111112221 111111 123456788888765444444444
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchh
Q 014880 264 LVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMS 342 (416)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (416)
........++|.|+++ .|.+..+.+.......++.+++++..+++ +|+++| +.+..+..+..++...+. + .
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~--~~l~~~~~~~~~~~~~~~--~--~- 285 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL--LVLRVQVFVVILGSIAML--S--Q- 285 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH--HHHHHHHHHHHHHHHHHh--h--h-
Confidence 4555566788998876 58888877777777777788888877665 343333 555556555555443332 2 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHH----HHHHHHHHHHhhhcc
Q 014880 343 AFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDK----MSCGIAVYVLQSYQS 405 (416)
Q Consensus 343 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~----~g~~ig~~l~~~~~~ 405 (416)
........+.|++.....|...+...+..|+++.+ ...+..+.... +|+.+++.+.++.+.
T Consensus 286 ~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~lG~~igp~~~G~l~~~~g~ 350 (381)
T PRK03633 286 AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELV--AMNQALLLSYTVGSLLGPSFTAMLMQNYSD 350 (381)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 12223445566666666677766666767665555 34444444444 455555555555543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-22 Score=194.38 Aligned_cols=337 Identities=9% Similarity=-0.024 Sum_probs=204.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCc
Q 014880 32 GHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (416)
Q Consensus 32 g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~ 111 (416)
+.+............+|.+.++.|+|+++.+++.+...+...+++++.|+++||+||||. +..+.+...++..+...
T Consensus 15 ~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~-~~~~~~~~~i~~~l~~~-- 91 (394)
T PRK03699 15 SYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQ-LIFGFALMILAVAGLMF-- 91 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHH--
Confidence 333333444455567788777779999999999999999999999999999999999997 55555555555433321
Q ss_pred cCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014880 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191 (416)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~ 191 (416)
. .+.. ..... ..+.+++.+.......+.+.+..+ +++|++..+..+....+|..+++.+...+..
T Consensus 92 -----~--~~~~-~~~~~---~~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--- 156 (394)
T PRK03699 92 -----S--HSLA-LFSIA---MFVLGVVSGITMSIGTFLITHVYE-GKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA--- 156 (394)
T ss_pred -----c--chHH-HHHHH---HHHHHHhhHhhccchhHHhhhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 1 1222 22222 224555555555556677777764 5678888887777777777776655544432
Q ss_pred ccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 014880 192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQA 271 (416)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 271 (416)
+..+||+.+.+.+++.++..++.++ .+.++.++++++++ ++..++ ..++.++...+..++.....+....
T Consensus 157 ------~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (394)
T PRK03699 157 ------RSIEWYWVYACIGLVYVAIFILTLF-SEFPALGKHAPKAD--KPVAKE-KWGIGVLFLAIAALLYILAQLTFIS 226 (394)
T ss_pred ------ccccHHHHHHHHHHHHHHHHHHHHh-cCCccccccCcccc--Cccccc-cCChHHHHHHHHHHHHHHHHHHHHH
Confidence 2458999999887776655544332 22211111111111 111111 1244555555666666666677789
Q ss_pred HHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 014880 272 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAI 350 (416)
Q Consensus 272 ~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (416)
|.|.|+++++|.+..+.+.+.....++..++.++.+++ +|+.+| +.+.....+.++....+... ++.+...+..+
T Consensus 227 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~--~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 302 (394)
T PRK03699 227 WVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ--RILTVLAGLALVLMYLFVNT--DDPSHLLYAIL 302 (394)
T ss_pred HHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchh--hHHHHHHHHHHHHHHHHHHc--CCchHHHHHHH
Confidence 99999999899999888888777777888888888776 333333 44444444434433333323 24444455566
Q ss_pred HHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 351 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 351 l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
+.|++.+...+...+...+..++++ + ...+.......+|..+++.+.+.+
T Consensus 303 ~~G~~~~~~~~~~~~~~~~~~~~~~-~--~~~g~~~~~~~~g~~i~p~~~G~l 352 (394)
T PRK03699 303 GLGFFSSAIYTTIITLGSQQTKVAS-P--KLVNFILTCGTIGTMLTFVVTSPI 352 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCC-H--HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7788777666665555544444332 3 233444444555555555554444
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-22 Score=196.44 Aligned_cols=366 Identities=13% Similarity=0.068 Sum_probs=209.2
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH-HH-----HHHHHHhhhhhhhhhhcccCCchhhHHhH
Q 014880 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVM-LS-----GQIADGFATIFIGELIDRFGHFKIWHGAG 96 (416)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~-~~-----~~~~~~i~~p~~G~lsDr~Grrk~~ll~~ 96 (416)
++-.....++.+........+....|...+|++.++.+.+... +. ..+...+++++.|.++||+||||.+ +.+
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l-~~~ 92 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL-IVT 92 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH-HHH
Confidence 3345566677777777777777888877788888776654432 22 2233356789999999999999984 455
Q ss_pred HHHHHHHHHHhhCCccCcccccccchh--hHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHH
Q 014880 97 SVLVAVSFSSVFGGCMPCRILSTSTLK--VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV 174 (416)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~ 174 (416)
.....++..+... .+ +.... +......+.+.+.+++.+...+...++++|+.+ +++|++..++...+.++
T Consensus 93 ~~~~~~~~~l~~~--~~-----~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p-~~~rg~~~~~~~~~~~~ 164 (434)
T PRK15075 93 LSIMASGTLLIAF--VP-----GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT-PGRKGFYTSWQSASQQV 164 (434)
T ss_pred HHHHHHHHHHHHh--CC-----cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC-cccchHHHHHHHHHHHH
Confidence 5555555433321 11 11100 000112223345667776666666788888885 68899999999888888
Q ss_pred HHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHH
Q 014880 175 ANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQ 254 (416)
Q Consensus 175 g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 254 (416)
|..+++.++..+...+.... .+..+||+.|++..... ....+.....||+++..+++++++.++.+++..|+++.+.
T Consensus 165 g~~~g~~~g~~l~~~~~~~~--~~~~gWr~~f~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (434)
T PRK15075 165 AVVFAALLGYLLNQWLSPAQ--MAEWGWRIPFLIGCLIV-PFIFLIRRSLEETEEFLARKHRPSMREIFRSLAANWRIVL 241 (434)
T ss_pred HHHHHHHHHHHHHHhCCHHH--HhccchHHHHHHHHHHH-HHHHHHHHhcCCCHHHHHhhhccccccHHHHHHHhHHHHH
Confidence 88877777766654432100 02568999998754332 2222222233442211111111122233455556655443
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHH
Q 014880 255 V-ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA 332 (416)
Q Consensus 255 ~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~ 332 (416)
. .+..++.....+....|.|.|+++..|.+..+.+....+..++.+++.++.|++ +|+++| +....+..+.++...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r--~~~~~~~~~~~~~~~ 319 (434)
T PRK15075 242 AGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRR--PVLIAFTVLAILTAY 319 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHH
Confidence 3 233344445566778899999998889988877777777777788888888776 455544 554444333222211
Q ss_pred -HH-hhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhH-HHHHH----HHHHHHHHHHHhhhc
Q 014880 333 -GI-LILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLD----KMSCGIAVYVLQSYQ 404 (416)
Q Consensus 333 -~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~-~~~~~----~~g~~ig~~l~~~~~ 404 (416)
.+ .....++........++.+++.+...+....+..+..|++.+| ...++ +++.. .+++.+.+++.++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg--~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 320 PALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRT--AGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccc--hheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 11 1112223323333344556666665555556666777777777 33343 22333 335555566666655
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-23 Score=201.08 Aligned_cols=334 Identities=11% Similarity=0.027 Sum_probs=199.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHH
Q 014880 47 LLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126 (416)
Q Consensus 47 l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (416)
..+++++.|+|+.+.|++.+++.+...+++++.|+++||+||||. +..+.+...++...... .+ ...+.....
T Consensus 49 ~~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~-~~~~~~~~~~~~~~~~~--~~----~~~~~~~~l 121 (438)
T TIGR00712 49 AMPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILSAAVMLLMGF--VP----WATSSIAIM 121 (438)
T ss_pred hhHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCcee-hHHHHHHHHHHHHHHhc--cc----cccchHHHH
Confidence 344566679999999999999999999999999999999999887 55565555555443321 11 001112222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHH
Q 014880 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIA 206 (416)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (416)
...+ .+.+++.+....+..+.+.|+.+ +++|++..++.+.+..+|..+++.+...... ...+||+.+
T Consensus 122 ~~~~---~l~g~~~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~---------~~~~w~~~f 188 (438)
T TIGR00712 122 FVLL---FLNGWFQGMGWPPCGRTMVHWWS-QSERGTIVSIWNCAHNIGGGIPPLLVLLGMA---------WFNDWHAAL 188 (438)
T ss_pred HHHH---HHHHHHhhcchHHHHHHHHHhcC-cccchhHHHHHHHHHHhHhHHHHHHHHHHHH---------HhhhhHHHH
Confidence 2222 24555555555556677777764 6789999999888888887776555433331 245899999
Q ss_pred HHHHHHHHHHHHHHHhhccCccccc-----cc--c-------CC-C---chHHH-HHHHHhhHHHHHHHHHHHHHHHHHH
Q 014880 207 YSSIFIGCCFVGIFLSRTEEPRLKM-----GL--R-------GN-S---HARIS-WAYWFKKILYYQVALVYMLTRLVVN 267 (416)
Q Consensus 207 ~~~~~i~~~~~~~~~~~~~e~~~~~-----~~--~-------~~-~---~~~~~-~~~l~~~~~~~~~~l~~~~~~~~~~ 267 (416)
++.+++.++..+..++..||+++++ ++ + ++ + +.++. .+.++||+.++...+..++.....+
T Consensus 189 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (438)
T TIGR00712 189 YFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRY 268 (438)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHH
Confidence 9988877776655555566543210 00 0 00 0 01111 1346788888877776666666677
Q ss_pred HHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHH---HHHHHHHHhhcCCchhH
Q 014880 268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVL---WVFCGAGILILPMNMSA 343 (416)
Q Consensus 268 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 343 (416)
....|+|.|+++..|.++.+.+.......+..+++.++.+++ +|.+++ ++.. .+... ..++...+...+..+.+
T Consensus 269 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (438)
T TIGR00712 269 GVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG-NRGA-TGVFFMTLVTIAVIVYWMNPAGNPL 346 (438)
T ss_pred HHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cccH-HHHHHHHHHHHHHHHHHhcCCCchH
Confidence 778899999998889998888887777777888888888776 444332 1222 12211 11221222222222333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHH-----HHHHHHHHhhhc
Q 014880 344 FMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMS-----CGIAVYVLQSYQ 404 (416)
Q Consensus 344 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g-----~~ig~~l~~~~~ 404 (416)
......+..|++.............+..|++.+| .+.|+.+....+| +.+.+.+.++.+
T Consensus 347 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g 410 (438)
T TIGR00712 347 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGYLGGSVAASAIVGYTVDFFG 410 (438)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHhcChhhee--eehhhhchHHHhhhhhhcchhHHHHHHhcc
Confidence 3333334444432222222222344666777777 5556655444443 344455555443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-22 Score=197.12 Aligned_cols=359 Identities=14% Similarity=0.068 Sum_probs=249.3
Q ss_pred CCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHH
Q 014880 20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (416)
Q Consensus 20 ~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~ 99 (416)
+++.+....+..+++.+++...+....++.+..+..-|+..++++..+..+-..+..|+.|.++||+.|||..+..-.+.
T Consensus 6 plr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~ 85 (524)
T PF05977_consen 6 PLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLR 85 (524)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 45666777788999999999999888899888888889999999999999999999999999999999999844433333
Q ss_pred HHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHH
Q 014880 100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 179 (416)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~ 179 (416)
.++...+... ......+.+ ....+ ..+.+++.+..+++.++.++++.+ +++..+++++.+...+++.+++
T Consensus 86 ~~~~~~L~~l-----~~~~~~~~~-~Ll~~---~fl~g~~~a~~~PA~~A~ip~lV~-~~~L~~A~al~s~~~niar~iG 155 (524)
T PF05977_consen 86 ALVALLLAVL-----AFFGLLSPW-LLLIL---TFLLGIGSAFFNPAWQAIIPELVP-KEDLPAANALNSISFNIARIIG 155 (524)
T ss_pred HHHHHHHHHH-----HHhCcCCHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHHHHHhcc
Confidence 2222222111 001112222 22222 236778888888999999999986 5778889999999999999999
Q ss_pred HHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccc-ccC--CCchHHHHHHHHhhHHHHHHH
Q 014880 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-LRG--NSHARISWAYWFKKILYYQVA 256 (416)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~-~~~--~~~~~~~~~~l~~~~~~~~~~ 256 (416)
+.+++.++..+ |-.+.|.+.++.-++..... ...|++..+++ +++ .++.++.++.+.++|......
T Consensus 156 PalgG~Lva~~----------G~~~~f~inalsfl~~i~~l-~~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~l 224 (524)
T PF05977_consen 156 PALGGILVAFF----------GAAAAFLINALSFLISILAL-LRWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSVL 224 (524)
T ss_pred chHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH-HHccccccccccchhhhhhhHHHHHHHHhcchHHHHHH
Confidence 99998888543 44556665544333332222 22222121111 111 233456667777777766555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHH
Q 014880 257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGI 334 (416)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~ 334 (416)
+..++..+........+|.+..+++|.+....|++....++++++|+++.+++ .+|. ++.+..+.+..+++...+
T Consensus 225 ~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l---~~~~~~~~lv~~~~~~~a~~~~~l 301 (524)
T PF05977_consen 225 LRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRL---RRRLSSRRLVLLASLLFALALLLL 301 (524)
T ss_pred HHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHh---hcccCcchhhHHHHHHHHHHHHHH
Confidence 54555555555556678999999999999999999999999999999887766 3333 355666666666665555
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHH----HHHHHHHHHHHHHHhhhccc
Q 014880 335 LILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLS----FLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~----~~~~~g~~ig~~l~~~~~~~ 406 (416)
.+.+ +.+...+..++.|++.........+..+..+|++..| ...+++. .+..+|..++|.+.+.++..
T Consensus 302 al~~--~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~G--Rv~si~~~~~~g~~~lGsll~G~la~~~g~~ 373 (524)
T PF05977_consen 302 ALSP--SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRG--RVFSIYQMVFFGGMPLGSLLWGFLADHFGVR 373 (524)
T ss_pred hcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 5544 7777777888899999888877778888888999988 5555554 44555666667777766644
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-22 Score=191.53 Aligned_cols=325 Identities=13% Similarity=0.086 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccch
Q 014880 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (416)
Q Consensus 43 ~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (416)
..+.+|.+.++.|+|++++|++.+...+...+.+|+.|+++||+||||. +..+.+...++...... + +
T Consensus 19 ~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~---~-------~- 86 (355)
T TIGR00896 19 VGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERS-VAAGLLLIAAGILIRSA---P-------G- 86 (355)
T ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHH-HHHHHHHHHHHHHHHHh---c-------c-
Confidence 3467888888889999999999999999999999999999999999988 55555555444433221 1 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHH
Q 014880 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY 202 (416)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~ 202 (416)
.+.....+ .+.+++.+.......+.+.+.. +++|++..+..+.+.++|..+++.+..++.... ..+|
T Consensus 87 ~~~l~~~~---~~~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~--------~~~w 153 (355)
T TIGR00896 87 TALLFAGT---ALIGVGIAIINVLLPSLIKRDF--PQRVGLMTGLYSMALMGGAALAAAATVPLAQHS--------GGHW 153 (355)
T ss_pred HHHHHHHH---HHHHHHHHHHhccchHHHHHhC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhhH
Confidence 22222222 3455666665555566666655 357999999999989999988887776665431 1348
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014880 203 RWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR 282 (416)
Q Consensus 203 ~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g 282 (416)
|+.+...++..++.... ..+|.+++++++ +++.+...++.+|||.++...+...+..........+.|.|+++ .|
T Consensus 154 ~~~f~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g 228 (355)
T TIGR00896 154 QQALAWWALPALLALLA---WIPQVRRRVAAN-QTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HG 228 (355)
T ss_pred HHHHHHHHHHHHHHHHH---HhhhhccccCCC-CCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence 98887665544333222 122222111111 11111234567888887766666666666677778899999876 58
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 014880 283 MGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMV 361 (416)
Q Consensus 283 ~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 361 (416)
.+..+.+.......++.+++.++.+++ +|+++| |+.+..+..+.+++...+.+.+.++.. ...++.|++.+...+
T Consensus 229 ~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~g~~~g~~~~ 304 (355)
T TIGR00896 229 ASAATAGSLLALMQLAQAASALLIPALARRVKDQ-RGIVAVLAVLQLVGLCGLLFAPMHGLW---AWALVLGLGQGGAFP 304 (355)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHhhhhHhH
Confidence 888888888888888899999888876 344232 345555555656665555544422222 245677899888877
Q ss_pred hhhhhheeee-ccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 362 TGISMQNVLV-GEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 362 ~~~~~~~~~~-~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
...+...+.. ++++.| ..+++.+....++..+++.+.+.+
T Consensus 305 ~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 305 LALTLIGLRSRQAAQAA--ALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred HHHHHHHHhccCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655544333 344445 555655555555555555444444
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-22 Score=197.01 Aligned_cols=359 Identities=11% Similarity=0.093 Sum_probs=205.2
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHh--CCChHH--HHH--HHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHH
Q 014880 28 YYGSGHMLNDITAACWFTYLLLFLTDI--GLSPRG--AAA--VMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (416)
Q Consensus 28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~--g~s~~~--~g~--~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~ 101 (416)
.-.+|.+.............|..-++. +.++.. ++. +.++..+...+++++.|+++||+||||. +..+.+++.
T Consensus 20 ~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~-l~~~~~l~~ 98 (490)
T PRK10642 20 AASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKI-LAITIVIMS 98 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHH
Confidence 334555554444444333444333344 343321 222 2467778899999999999999999998 555666665
Q ss_pred HHHHHhhCCccCcccccccch--hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHH
Q 014880 102 VSFSSVFGGCMPCRILSTSTL--KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 179 (416)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~ 179 (416)
++.++... .| +... .+....+.+.+.+.|++.+...++..+++.|+.+ +++|++..++...+..+|..++
T Consensus 99 i~~~~~a~--~~-----~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p-~~~Rg~~~~~~~~~~~~G~~lg 170 (490)
T PRK10642 99 ISTFCIGL--IP-----SYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSP-DRKRGFMGSWLDFGSIAGFVLG 170 (490)
T ss_pred HHHHHHHh--cc-----cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCC-CCCCcHHHHHHHHHHHHHHHHH
Confidence 55444321 12 1110 1111123334456778888888888899999886 5789999999888888888887
Q ss_pred HHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccc---c--c-CC----CchHHHHHHHHhh
Q 014880 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG---L--R-GN----SHARISWAYWFKK 249 (416)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~---~--~-~~----~~~~~~~~~l~~~ 249 (416)
+.+...+...+.... ...+|||+.|++.++++++..+ .....||++...+ + + ++ ++.+.++++++++
T Consensus 171 ~~~~~~~~~~~~~~~--~~~~gWR~~f~i~~~~~l~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (490)
T PRK10642 171 AGVVVLISTIVGEAN--FLDWGWRIPFFIALPLGIIGLY-LRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATK 247 (490)
T ss_pred HHHHHHHHHhcCHHH--hcCccHHHHHHHHHHHHHHHHH-HHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHH
Confidence 766655544332110 0247999999987665554333 3445666432110 0 0 00 1112345666653
Q ss_pred -HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHH
Q 014880 250 -ILYYQV-ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVL 326 (416)
Q Consensus 250 -~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~ 326 (416)
++.... ....++.....+....|+|.|+.+.+|.+............++..++.++.+++ ++++|| +.+..+.+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~~~~~~~ 325 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR--PFVILGSVA 325 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 222222 223344456667778899999988888887766666666667777788777766 455554 555555443
Q ss_pred HHHHHHH-HhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhH-HHHHHHHHHHHHHHHHhhh
Q 014880 327 WVFCGAG-ILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 327 ~~~~~~~-~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~-~~~~~~~g~~ig~~l~~~~ 403 (416)
..+.... +.....++...+++..++.+++.+...+....+..+..|++.+| ...+. +++. ..++.+++.+.+.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg--~~~g~~~~~~-~~~g~~~p~i~g~l 401 (490)
T PRK10642 326 LFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRY--SALAAAFNIS-VLVAGLTPTLAAWL 401 (490)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccch--HHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 2222222 22222234444445555666665554444444555667888877 44453 3333 33345555555443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-22 Score=190.29 Aligned_cols=320 Identities=16% Similarity=0.165 Sum_probs=243.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhC
Q 014880 30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (416)
Q Consensus 30 ~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~ 109 (416)
.+..+.............|.+.++.|.++.+.+++.+...+...+.+|+.|+++||+||||. +..+.+...++......
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~-~~~~~~~~~~~~~~~~~ 83 (352)
T cd06174 5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRV-LLLGLLLFALGSLLLAF 83 (352)
T ss_pred HHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchh-hHHHHHHHHHHHHHHHH
Confidence 34556666777777888999998889999999999999999999999999999999999986 66666666666544321
Q ss_pred CccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 014880 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (416)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~ 189 (416)
. .+.. .... ...+.+++.+...++..++..|..+ +|+|++..++.+....+|..+++.+...+..
T Consensus 84 -------~--~~~~-~~~~---~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~- 148 (352)
T cd06174 84 -------A--SSLW-LLLV---GRFLLGLGGGALYPAAAALIAEWFP-PKERGRALGLFSAGFGLGALLGPLLGGLLAE- 148 (352)
T ss_pred -------h--ccHH-HHHH---HHHHHHcccccccHhHHHHHHHhCC-ccchhhhhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 1 1222 2222 2235667777777888899999886 5789999999999999999998887776662
Q ss_pred ccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 014880 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 269 (416)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 269 (416)
..+|++.+.+.+++.++..+...+.. |+++...+..++........
T Consensus 149 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~ 194 (352)
T cd06174 149 ---------SLGWRWLFLILAILGLLLALLLLFLL-------------------------RLLLLLALAFFLLSFGYYGL 194 (352)
T ss_pred ---------HhhHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHhHHHHH
Confidence 45699998888777666655443321 45566666677777777888
Q ss_pred HHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHH-HHHHHHHHHHHHHHHHhhcCCchhHHHHH
Q 014880 270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKA-YYSAGGVLWVFCGAGILILPMNMSAFMYV 347 (416)
Q Consensus 270 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (416)
..+.|.+..+..|.++.+.+.......++..++.++.+++ +|.++| + .+..+..+..++...+...+ +.+...+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~ 270 (352)
T cd06174 195 LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR--RLLLLIGLLLAALGLLLLALAP--SLALLLV 270 (352)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhc--cHHHHHH
Confidence 8899999988878898888888888888888898888776 444443 5 67777777777766655544 4666677
Q ss_pred HHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 014880 348 LAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (416)
Q Consensus 348 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~ 405 (416)
..++.|++.+...+....+..+..|++++| ...+..+....+|..+++.+.+.+.+
T Consensus 271 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~i~g~l~~ 326 (352)
T cd06174 271 ALLLLGFGLGFAFPALLTLASELAPPEARG--TASGLFNTFGSLGGALGPLLAGLLLD 326 (352)
T ss_pred HHHHHHHHHhccchhHHHHHHhhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888999999998888888888888888888 78888888888888888887776643
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-23 Score=199.66 Aligned_cols=331 Identities=11% Similarity=-0.043 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccch
Q 014880 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (416)
Q Consensus 43 ~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (416)
...+++.+.++.|.|+.+++++.+...+...++.|+.|+++||+||||. ++.+.+...++...... . .+.
T Consensus 38 ~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~~~~~~-------~--~~~ 107 (455)
T TIGR00892 38 VTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPV-VIAGGLLASLGMILASF-------S--SNV 107 (455)
T ss_pred hhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHH-HHhhHHHHHHHHHHHHH-------h--hhH
Confidence 3456777777779999999999999999999999999999999999987 55555555444333211 1 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHH
Q 014880 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY 202 (416)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~ 202 (416)
.......+ .+.+++.+....+..+++.+.. +++|+++.++.+.+..+|..+++.+.+.+. +..+|
T Consensus 108 ~~l~~~~~---~l~G~~~~~~~~~~~~~~~~~~--~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~----------~~~gw 172 (455)
T TIGR00892 108 IELYLTAG---FITGLGLAFNFQPSLTMLGKYF--YRRRPLANGLAMAGSPVFLSTLAPLNQYLF----------ESFGW 172 (455)
T ss_pred HHHHHHHH---HHHHhcchhhhhHHHHHHHHHH--HhhHHHHHHHHHhcccHHHHHHHHHHHHHH----------HHhCh
Confidence 21212222 2445555554455556666665 468999999999988888887766665555 35689
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCccc----ccc--c--c-C-C--C----chH---HHH--HHHHhhHHHHHHHHHHHH
Q 014880 203 RWIAYSSIFIGCCFVGIFLSRTEEPRL----KMG--L--R-G-N--S----HAR---ISW--AYWFKKILYYQVALVYML 261 (416)
Q Consensus 203 ~~~~~~~~~i~~~~~~~~~~~~~e~~~----~~~--~--~-~-~--~----~~~---~~~--~~l~~~~~~~~~~l~~~~ 261 (416)
|+.|.+.+++.++..+..++..++++. +++ + + + + + +.. .++ .+++|+|+++...+..++
T Consensus 173 r~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (455)
T TIGR00892 173 RGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVI 252 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHH
Confidence 999999888776555444333332111 000 0 0 0 0 0 000 111 247788888877766666
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHH--HHHHHHHHHHHHhhcC
Q 014880 262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMA-WTGQRLKAYYSA--GGVLWVFCGAGILILP 338 (416)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~r~~~~~~~--~~~~~~~~~~~~~~~~ 338 (416)
..........++|.|..+ .|.+..+.+.+..+..++.+++.++.+++. +...|.++...+ +..+..++.......
T Consensus 253 ~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~- 330 (455)
T TIGR00892 253 MFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA- 330 (455)
T ss_pred HHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 666666777889999865 699888888888888888888888777662 211111222222 222222322222222
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 339 MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 339 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
++.+.+++..++.|++.+...+...+...+..++++.| ...++++....+|+.+|+.+.+.+
T Consensus 331 -~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~lg~~igp~i~G~l 392 (455)
T TIGR00892 331 -GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFS--SAVGLVTIVECCAVLIGPPLAGRL 392 (455)
T ss_pred -chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHh--hHHhHHHHHHHHHHHccccceeee
Confidence 35666667778889998888777777777778887777 677888877888877777666644
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-23 Score=201.44 Aligned_cols=327 Identities=11% Similarity=0.041 Sum_probs=217.4
Q ss_pred HhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHH
Q 014880 53 DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVF 132 (416)
Q Consensus 53 ~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (416)
|.|.++.+.|++.+.+.+.+.+++++.|+++||+||||. +..+.+...++..+... ....+ ..... +.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-l~~~~~~~~~~~~~~~~-------~~~~~-~~~l~---~~ 137 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWS-IGIGMFLSSVISIVIPW-------AAGGG-IALVV---FC 137 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchh-hHHHHHHHHHHHHHHHH-------HHHcC-chHHH---HH
Confidence 348999999999999999999999999999999999987 55555544444333210 00011 11222 22
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchh-hHHHHHHHHHHH
Q 014880 133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE-NQYRWIAYSSIF 211 (416)
Q Consensus 133 ~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~ 211 (416)
+.+.|++.+...+...++++++.+ +++|++..++...+..+|.++++.+.+.+. .. .+||+.|++.++
T Consensus 138 r~~~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~----------~~~~gw~~~f~i~~~ 206 (465)
T TIGR00894 138 RVIQGLAQGSVSPATHKIIVKWAP-PKERSRLLGMSTSGFQLGTFIFLPISGWLC----------ESWGGWPMIFYVFGI 206 (465)
T ss_pred HHHHHHhcccchhhHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hccCCCCeehhhhhH
Confidence 336677777777778888898875 688999999999999999888877766554 23 389999999888
Q ss_pred HHHHHHHHHHhhccCcccccccc--------------C--CCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014880 212 IGCCFVGIFLSRTEEPRLKMGLR--------------G--NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF 275 (416)
Q Consensus 212 i~~~~~~~~~~~~~e~~~~~~~~--------------~--~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 275 (416)
++++..++.+...+|+++.++++ + +++.+.+++++++++.++...+..++.....+....|+|.
T Consensus 207 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ 286 (465)
T TIGR00894 207 VGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPT 286 (465)
T ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777665555555432211100 0 0111235788999999988888888888888888899999
Q ss_pred HHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhh--HH----HHHHHHHHHHHHHHHHhhc-CCchhHHHHH
Q 014880 276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL--KA----YYSAGGVLWVFCGAGILIL-PMNMSAFMYV 347 (416)
Q Consensus 276 ~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~--~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 347 (416)
|+.+++|.+..+.++...+..++..++.++.|++ +++.+|. ++ .+..+......+...+... ..++....++
T Consensus 287 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (465)
T TIGR00894 287 FISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTII 366 (465)
T ss_pred HHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 9999999999888888877788888888888876 4444332 11 1111111111111111111 1123333334
Q ss_pred HHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 014880 348 LAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (416)
Q Consensus 348 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~ 405 (416)
...+.+.+.+...+.......+..|+ ..| ...++.++...+|+.+++.+++.+-+
T Consensus 367 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g--~~~g~~~~~~~l~~~i~p~l~g~~~~ 421 (465)
T TIGR00894 367 ILTLANAVSSGPLAGVLINSLDLAPR-FLG--FIKGITGLPGFIGGLIASTLAGNILS 421 (465)
T ss_pred HHHHHHHHhhhhhhhhhhchhhcChh-HHH--HHHHHHHHHHHHHHHHHHHhhheeeC
Confidence 44444555444444444444444443 556 89999999999999999999987654
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-21 Score=185.11 Aligned_cols=346 Identities=12% Similarity=0.009 Sum_probs=209.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCChHHHHHH--HHHHHHHHHhhhhhhhh-hhcccCCchhhHHhHHHHHHHHH-HHhhC
Q 014880 34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAV--MLSGQIADGFATIFIGE-LIDRFGHFKIWHGAGSVLVAVSF-SSVFG 109 (416)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~--~~~~~~~~~i~~p~~G~-lsDr~Grrk~~ll~~~~~~~~~~-~~~~~ 109 (416)
+...+..+...+++|.|++|.|.|++++|.+ .....+...+.+|+++. .+||+||||.|++...+...... .+...
T Consensus 11 ~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~ 90 (390)
T TIGR02718 11 LSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALV 90 (390)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcC
Confidence 5566777888899999999999999999997 46668888899999955 79999999997665544333222 12111
Q ss_pred CccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 014880 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (416)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~ 189 (416)
.+ ......+.... ........+..++..+++..|..+ +++++...+.+..+..+|.++++.....+.
T Consensus 91 --~~----~~~~~~~~~~~----~~~~~~~~a~~d~~~d~~~~~~~~-~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~-- 157 (390)
T TIGR02718 91 --GP----DVAGAGWAVGL----LACASLASATQDIATDGMAAEHFN-GRTLAKGNAVQIAGVMIGFFGGGAGTLVLF-- 157 (390)
T ss_pred --Cc----chhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCC-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 01 11111222111 123445556666777777776553 556677777777777778777765555554
Q ss_pred ccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 014880 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 269 (416)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 269 (416)
+..+||..|++.+++.++..+..++..||++ +++ +++++...++++.+|+|.++......++........
T Consensus 158 --------~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 227 (390)
T TIGR02718 158 --------GKFGQRPAFLLVACVPLASLVCVLWLKDRAV-ASP-EAPLARRASLFRFFRRPLAWSLLALALLSAMTAVSG 227 (390)
T ss_pred --------HHhCHHHHHHHHHHHHHHHHHHHHHcCCCCc-Ccc-ccchhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHH
Confidence 3568999999998877766655544444322 111 111223445778899998777776667776767777
Q ss_pred HHHHHHHHHhhcccchhhhhHHHHHHHH-HHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhh-c---CCchhH
Q 014880 270 QAYLAFYVINDLRMGQSAKALVPAIIYI-CSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI-L---PMNMSA 343 (416)
Q Consensus 270 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i-~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~ 343 (416)
..+.+.|+.| .|.++++.+.......+ ..+++.++.+++ +|+++| +.+..+..+.++....... . ..++..
T Consensus 228 ~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (390)
T TIGR02718 228 FGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW--RTFILGVGLAGSLALLWFAQAAFWLAPGIA 304 (390)
T ss_pred HHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHcccCCcHH
Confidence 7888888876 69999988877665543 455566666665 444443 5555554433222221111 1 112233
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhheeeecc-cccc--chhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 014880 344 FMYVLAIFVGIANALMMVTGISMQNVLVGE-DLSG--CAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (416)
Q Consensus 344 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~G--~g~~~~~~~~~~~~g~~ig~~l~~~~~~ 405 (416)
..+....+.++..+...+.......+..++ +.+| .+..++..+++..+|+.+++.+.++++.
T Consensus 305 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~ 369 (390)
T TIGR02718 305 VAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGY 369 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333334444555666655555554444443 5556 2344445555566666666666666653
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-22 Score=197.43 Aligned_cols=353 Identities=13% Similarity=0.027 Sum_probs=202.9
Q ss_pred CchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHH
Q 014880 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (416)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~ 101 (416)
+++......++.+...+........+|.+.++.|.|+.+.+++.+...+...+++++.|+++||+||||. ++.+.+...
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~ 96 (496)
T PRK03893 18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLA-MVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHH
Confidence 3444556666766666666777777777777779999999999999999999999999999999999887 555555555
Q ss_pred HHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHH
Q 014880 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (416)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~ 181 (416)
++...... . .+.. ..... ..+.+++.+.......+++.|..+ +++|++..+....+..+|..+++.
T Consensus 97 ~~~~~~~~-------~--~~~~-~l~~~---~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~ 162 (496)
T PRK03893 97 VGTLACGF-------A--PGYW-TLFIA---RLVIGMGMAGEYGSSATYVIESWP-KHLRNKASGFLISGFSIGAVVAAQ 162 (496)
T ss_pred HHHHHHHH-------H--hHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55433221 1 1222 22222 235666666666777777888775 678999999998888888888777
Q ss_pred HHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccc-ccCCCchHHHHHHHHhhHH-HH------
Q 014880 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-LRGNSHARISWAYWFKKIL-YY------ 253 (416)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~l~~~~~-~~------ 253 (416)
+...+. +..+||+.+.+..+ .++..++.....||++..++ ++++++.++..+...++++ ..
T Consensus 163 ~~~~l~----------~~~~w~~~f~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (496)
T PRK03893 163 VYSLVV----------PVWGWRALFFIGIL-PIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTL 231 (496)
T ss_pred HHHHHh----------ccCCHHHHHHHHHH-HHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHH
Confidence 766554 24689998876433 33333333334454322111 1111111111111111000 00
Q ss_pred -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 014880 254 -----------------------------------------------QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS 286 (416)
Q Consensus 254 -----------------------------------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 286 (416)
...+..+...........++|.|++++.|.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~ 311 (496)
T PRK03893 232 AAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPH 311 (496)
T ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHH
Confidence 000000000011112456889999888899998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 014880 287 AKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGIS 365 (416)
Q Consensus 287 ~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 365 (416)
+.+.+.....++.+++.++.+++ +++++| +.+..+..+..+....+.....++.+......++.++......+....
T Consensus 312 ~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (496)
T PRK03893 312 TVANVLFFSGFGAAVGCCVGGFLGDWLGTR--KAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPK 389 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHH
Confidence 88888888888888888888776 343333 555555544444433333333233333333333333222222233444
Q ss_pred hheeeeccccccchhhhhHHHHHHHH----HHHHHHHHHhhhc
Q 014880 366 MQNVLVGEDLSGCAFVCGTLSFLDKM----SCGIAVYVLQSYQ 404 (416)
Q Consensus 366 ~~~~~~~~~~~G~g~~~~~~~~~~~~----g~~ig~~l~~~~~ 404 (416)
+..+..|++.+| ..+++.+....+ |+.+++.+.++++
T Consensus 390 ~~~~~~~~~~~g--~~~~~~~~~~~~g~~lgp~l~g~l~~~~g 430 (496)
T PRK03893 390 LIGGYFDTEQRA--AGLGFTYNVGALGGALAPILGALIAQRLD 430 (496)
T ss_pred HHHhhCCHHHhh--cccchhhhhhhHHHHHHHHHHHHHhccCC
Confidence 556667777766 445554444444 4444555555544
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=185.30 Aligned_cols=361 Identities=12% Similarity=0.090 Sum_probs=262.8
Q ss_pred hhhcccchHHHHHHHHH-HHHHHHHHHHh-C---CCh----HHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHH
Q 014880 27 LYYGSGHMLNDITAACW-FTYLLLFLTDI-G---LSP----RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGS 97 (416)
Q Consensus 27 ~~~~~g~~~~~~~~~~~-~~~l~~~~~~~-g---~s~----~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~ 97 (416)
..|.+-+.+++-....+ ..++|+|+++. + .++ +..|...++..+..++..|+.|.++|+.|+||+++-...
T Consensus 17 ~sWilyD~~~~p~~~ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~ 96 (438)
T COG2270 17 KSWILYDWGSSPFFAIVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFT 96 (438)
T ss_pred eeEEEeeccCCceeeeeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHH
Confidence 35555555555544444 45789999875 2 233 567888999999999999999999999999999887777
Q ss_pred HHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHH
Q 014880 98 VLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL 177 (416)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~ 177 (416)
.+.+.+..+++. +| ..++++..+.+. .+..+++...++.++++.++.++ +++-++.++.......+|+.
T Consensus 97 ~i~i~~~~~L~~--i~-----~~s~~~~~l~~~---il~~i~~~~s~Vfyds~L~~~~~-k~~~~riS~lg~~~gylgs~ 165 (438)
T COG2270 97 AIGIISTFLLWF--IP-----PGSYLLLLLLFL---ILASIGFEFSNVFYDSMLPRLTT-KDNMGRISGLGWALGYLGSV 165 (438)
T ss_pred HHHHHHHHHHHH--hC-----CCchHHHHHHHH---HHHHHhcchhheehhhHhhhhcC-ccccCcccccccccccccch
Confidence 777777666552 23 213344433332 26678888999999999999885 56677777777777788876
Q ss_pred HHHHHHHHHHHhccccc--------cCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccc-cc-----cCCCchHHHH
Q 014880 178 SLYAIAFIVFSVSTAKT--------HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM-GL-----RGNSHARISW 243 (416)
Q Consensus 178 l~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~-~~-----~~~~~~~~~~ 243 (416)
+............+... +.++...-|..+.+.++.-++..+..++.+++.+... +. +.-++.++++
T Consensus 166 i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~ 245 (438)
T COG2270 166 ILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTF 245 (438)
T ss_pred HHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHH
Confidence 65443322211111000 1113456688888888888888888888887754321 11 0112345667
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHH
Q 014880 244 AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYS 321 (416)
Q Consensus 244 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~ 321 (416)
|+..+++......+..++..-+.+.....-..|-.+++|.+..+...+.....+.+++++++.|++ .+|+ |+++.
T Consensus 246 k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~L---d~rfg~k~vl~ 322 (438)
T COG2270 246 KEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFL---DERFGSKPVLM 322 (438)
T ss_pred HHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCceeeh
Confidence 778888887888888888888888888888999999999999999888888888899999998877 3444 47777
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHh
Q 014880 322 AGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (416)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~ 401 (416)
.+.++..+..+...+.. ....+++...+.|+..|..++.+-++..+.+|++++| .++|++++..+.++.+||++++
T Consensus 323 ~~lvi~~~~~~~~~~~~--~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~--~fFglyaltgra~S~~gp~lv~ 398 (438)
T COG2270 323 IGLVILSIAALYLIFLE--GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEG--RFFGLYALTGRAASFLGPFLVA 398 (438)
T ss_pred HHHHHHHHHHHHHHHcc--ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccc--ceeehhhhhhhHHHHHHHHHHH
Confidence 77766555544444443 3455567778999999999999999999999999999 8999999999999999999998
Q ss_pred hhcc
Q 014880 402 SYQS 405 (416)
Q Consensus 402 ~~~~ 405 (416)
.+..
T Consensus 399 v~t~ 402 (438)
T COG2270 399 VITQ 402 (438)
T ss_pred HHHH
Confidence 7743
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-21 Score=211.91 Aligned_cols=358 Identities=13% Similarity=-0.004 Sum_probs=227.3
Q ss_pred CCCchhhhhhcccchHHHHHHHHHHHHHHHHH-HHhCC--ChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhH
Q 014880 20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFL-TDIGL--SPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAG 96 (416)
Q Consensus 20 ~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~-~~~g~--s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~ 96 (416)
.++.+....+.+..+..++........+..+. .+.+. +....+++.+++.+...+++|+.|+++||+||||++ +.+
T Consensus 5 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l-~~~ 83 (1146)
T PRK08633 5 LLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVI-RIV 83 (1146)
T ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHH-HHH
Confidence 34555556666666666665544444444333 33444 455689999999999999999999999999999874 444
Q ss_pred HHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHH
Q 014880 97 SVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN 176 (416)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~ 176 (416)
..+.++..++... ....+..+.+... ..+.+++.+...++..++++++.+ +++|+++.++...+..+|.
T Consensus 84 ~~~~~~~~~~~~~-------~~~~~~~~~l~~~---r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~ig~ 152 (1146)
T PRK08633 84 KLFEVGLTLLIVL-------AYYLGWFWLAFAV---TFLLGAQSAIYSPAKYGIIPELVG-KENLSRANGLLEAFTIVAI 152 (1146)
T ss_pred HHHHHHHHHHHHH-------HHHHccHHHHHHH---HHHHHHHHHhhchHHHhhhHHhcC-cccchhhhhHHHHHHHHHH
Confidence 3332222211110 0001112222222 236677777787888899999986 5789999999999999999
Q ss_pred HHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccc---cCC----CchHHHHHHHHhh
Q 014880 177 LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---RGN----SHARISWAYWFKK 249 (416)
Q Consensus 177 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~---~~~----~~~~~~~~~l~~~ 249 (416)
++++.+++.+........ .+...+|++.+.+..+...+..++..+..+|.+..++. +++ .+....++.++++
T Consensus 153 ~lg~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 231 (1146)
T PRK08633 153 LAGTALFSFLFESVNGNT-PSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSD 231 (1146)
T ss_pred HHHHHHHHHHHHhhcccc-ccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcC
Confidence 999988887775421100 00112334443333333333333333344553322111 111 1224456778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh-hhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHH
Q 014880 250 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS-AKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVL 326 (416)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~~~~ 326 (416)
+.++...+..++.+........++|.|+.+.+|.+.. ..+++.....++.++++++.+++ .||. ++.+.++.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l---~~r~~~~~~~~~~~~~ 308 (1146)
T PRK08633 232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRL---SGRHIELGLVPLGALG 308 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH---hCCceEccchhHHHHH
Confidence 8877666666666666666778899999999999888 78888888888888888887665 5554 3455556555
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHH
Q 014880 327 WVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAV 397 (416)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~ 397 (416)
.+++.+.+.+.+ +.+...+..++.|++.++..+...++..+..|++.+| .++|+.++...+|..+++
T Consensus 309 ~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg--~~~~~~~~~~~lg~~~~~ 375 (1146)
T PRK08633 309 LALSLFLLPTAP--SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELG--KVLAANNFLQNVGMLLFL 375 (1146)
T ss_pred HHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchh--hhhHHHHHHHHHHHHHHH
Confidence 555544444443 5566667778889988888777777888888888888 777777777777764443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-20 Score=180.46 Aligned_cols=339 Identities=8% Similarity=-0.013 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcc
Q 014880 37 DITAACWFTYLLLFLT-DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (416)
Q Consensus 37 ~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~ 115 (416)
...+.+..+..+.+.+ |+|+|++|.+++.++..+.+++.+.+.|.+.||+|+||. +..+.+...+....... .++
T Consensus 47 F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v-~~~~~ll~~i~~~~~~~-a~~-- 122 (462)
T PRK15034 47 FCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRW-TVFSTAILIIPCVWLGI-AVQ-- 122 (462)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHHHH-HHc--
Confidence 3344555555555555 469999999999999999999999999999999999997 44444444444333210 000
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHH-----Hhc
Q 014880 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF-----SVS 190 (416)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~-----~~~ 190 (416)
....++. .+... ..+.|++ +...++....++++.+ +++|+++.++.....++|..+...+.+++. ..+
T Consensus 123 -~~~~s~~-~lli~---r~l~Gig-g~~f~~~~~~vs~wfp-~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~ 195 (462)
T PRK15034 123 -NPNTPFG-IFIVI---ALLCGFA-GANFASSMGNISFFFP-KAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFL 195 (462)
T ss_pred -ccCCCHH-HHHHH---HHHHHHH-HHhHHHHHHHHHHHCC-HhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 0011222 22222 2355555 4455666677777774 678999999998788888887777766654 223
Q ss_pred ccccc---CchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 014880 191 TAKTH---ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVN 267 (416)
Q Consensus 191 ~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 267 (416)
++... .....+||....+..++.++..+..++..++++. ++.+ .+..++.+|||+.|.+++.+++....+.
T Consensus 196 G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-----~~~~-~~~~~~vlk~~~~Wllslly~~tFG~fv 269 (462)
T PRK15034 196 GVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-----SRAS-IADQLPVLQRLHLWLLSLLYLATFGSFI 269 (462)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-----cccC-HHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 22110 0125678998888877777776666665444221 1112 3455679999999999999988877888
Q ss_pred HHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHH-HhhcCC---ch
Q 014880 268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAG-ILILPM---NM 341 (416)
Q Consensus 268 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~-~~~~~~---~~ 341 (416)
++..++|.|.++.++ .........+..+...+..++.|++ +||+ ++++.++.+...++... +...+. .+
T Consensus 270 g~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~L---ADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~ 344 (462)
T PRK15034 270 GFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAI---SDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGN 344 (462)
T ss_pred HHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHH---HHhcCchHHHHHHHHHHHHHHHHHHHHhccccccH
Confidence 888899999877653 2211111222334455666777666 5555 46666666554444322 233332 23
Q ss_pred hHHHHHHH----HHHHHHHHHHHHhhhhhheeeecc---------------------ccccchhhhhHHHHHHHHHHHHH
Q 014880 342 SAFMYVLA----IFVGIANALMMVTGISMQNVLVGE---------------------DLSGCAFVCGTLSFLDKMSCGIA 396 (416)
Q Consensus 342 ~~~~~~~~----~l~g~~~~~~~~~~~~~~~~~~~~---------------------~~~G~g~~~~~~~~~~~~g~~ig 396 (416)
.+...+.. +..|+|+|..+ .++.+.+++ ++. |.+.|+.+....+|+.+-
T Consensus 345 ~~~~~~~~~~l~~~~G~gngsvf----k~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--g~v~G~v~a~G~~Ggf~~ 418 (462)
T PRK15034 345 FIAFYAVFMGLFLTAGLGSGSTF----QMIAVIFRQITIYRVKMKGGSDEQAQREAVTET--AAALGFISAIGAVGGFFI 418 (462)
T ss_pred HHHHHHHHHHHHHHhcccchHHH----HhhHHHHhhhhhhcccccccchhHHhhHHHHHH--HHHHHHHHHHHHcccchh
Confidence 33333333 23344554443 222221221 123 477788788888877777
Q ss_pred HHHHhhh
Q 014880 397 VYVLQSY 403 (416)
Q Consensus 397 ~~l~~~~ 403 (416)
|.+.+..
T Consensus 419 p~~~g~~ 425 (462)
T PRK15034 419 PQAFGMS 425 (462)
T ss_pred hHHHHHH
Confidence 7665544
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-21 Score=208.85 Aligned_cols=318 Identities=11% Similarity=-0.031 Sum_probs=216.2
Q ss_pred ChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHH--hHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHH
Q 014880 57 SPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG--AGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA 134 (416)
Q Consensus 57 s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (416)
+....++..+++.+...+++|+.|+++||+||||+... ...+.........+ ...+ .+.++.. ..
T Consensus 50 ~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~---------~~~s-~~~l~~~---~~ 116 (1140)
T PRK06814 50 NNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGF---------HLNS-VPLLFAA---LF 116 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH---------HHhh-HHHHHHH---HH
Confidence 33568888999999999999999999999999986322 22111111111111 0012 2222222 23
Q ss_pred HHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHH
Q 014880 135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC 214 (416)
Q Consensus 135 ~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 214 (416)
+.+++.+...+...++++++.+ +++|++++++.+.+..+|.++++.+++.+.. ..+|++.+....++.+
T Consensus 117 l~gi~~a~~~p~~~a~l~~~~~-~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~----------~~~~~~~~~~~~~~~~ 185 (1140)
T PRK06814 117 LMGIHSALFGPIKYSILPDHLN-KDELLGANALVEAGTFIAILLGTIIGGLATI----------SGNFVILVALLMGIAV 185 (1140)
T ss_pred HHHHHHHhhchHHHHhhHhhcC-ccccchhhHHHHHHHHHHHHHHHHHHHHHHh----------ccccHHHHHHHHHHHH
Confidence 6677788888888999999986 6789999999999999999999998888774 3578888844444444
Q ss_pred HHHHHHHhhccCccccccc-cCC----CchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhh
Q 014880 215 CFVGIFLSRTEEPRLKMGL-RGN----SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKA 289 (416)
Q Consensus 215 ~~~~~~~~~~~e~~~~~~~-~~~----~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 289 (416)
+..+ ..+.+++++.+++. +.+ ++....++.+.+++.++...+..++.++.......++|.|+.+.+|.+....+
T Consensus 186 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g 264 (1140)
T PRK06814 186 LGWL-ASLFIPKTGNAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVAT 264 (1140)
T ss_pred HHHH-HHhhCCCCCCCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHH
Confidence 4333 33445543322111 111 12234677888999988887777777777777788999999999999998889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhc------------------CCchhHHHHHHH
Q 014880 290 LVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILIL------------------PMNMSAFMYVLA 349 (416)
Q Consensus 290 ~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ 349 (416)
.+.+...++.++++++.+++ .+|. ++.+..+.++..++.+.+.+. ..++.+.+.+..
T Consensus 265 ~~~~~~~~g~~ig~~~~g~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1140)
T PRK06814 265 LFLAVFSVGVAVGSFLASKL---SEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDL 341 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHH
Confidence 88888888899999888766 3332 233333333333332222221 113555666777
Q ss_pred HHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhc
Q 014880 350 IFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (416)
Q Consensus 350 ~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~ 404 (416)
++.|++.+...+...++.++.+|++..| .++|+.++...+|..+++.+.+.+.
T Consensus 342 ~~~g~~~~~~~~~~~~~~~~~~p~~~~G--~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 342 FGLAAAGGLYIVPLFAALQAWANPAHRA--RVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred HHHHHHHHHhHHHHHHHHHhhCCcccce--eeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999888888888888889999988 7788888877877777776666553
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=189.85 Aligned_cols=339 Identities=12% Similarity=-0.026 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccch
Q 014880 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (416)
Q Consensus 43 ~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (416)
+...+|....+.|+++.+.+++.++..+...++++++|+++||+|||+.+ +.+.++..++.++... . .+
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~l-ii~lil~~i~~ll~af-------a--~s- 254 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCL-LICLSVNGFFAFFSSF-------V--QG- 254 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHH-------H--hh-
Confidence 44556666666799999999999999999999999999999999999884 4444444444333221 1 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccc---cCchh
Q 014880 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT---HADLE 199 (416)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~---~~~~~ 199 (416)
.+.++..+ .+.+++.++..+...+++.|+.+ +++|++..++...+..+|.++++.++..+...+++.. .....
T Consensus 255 ~~~llv~R---~l~G~g~g~~~p~~~~~isE~~p-~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~ 330 (742)
T TIGR01299 255 YGFFLFCR---LLSGFGIGGAIPIVFSYFAEFLA-QEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQF 330 (742)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccccccc
Confidence 22222222 36777888777788889999885 6789999999999999999988887776665443211 00123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCcccc---c---c-----------ccCC-----C--------------------
Q 014880 200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK---M---G-----------LRGN-----S-------------------- 237 (416)
Q Consensus 200 ~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~---~---~-----------~~~~-----~-------------------- 237 (416)
.+||+.+++.++..++.. +..++.||++.. + + .+.+ .
T Consensus 331 ~gWR~l~~i~~lp~ll~l-l~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (742)
T TIGR01299 331 HSWRVFVIVCAFPCVFAI-GALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEI 409 (742)
T ss_pred ccHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcc
Confidence 579999888766555544 444556665321 0 0 0000 0
Q ss_pred --ch------------------HHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----c---------
Q 014880 238 --HA------------------RISWAYWFKKIL---YYQVALVYMLTRLVVNVSQAYLAFYVIND----L--------- 281 (416)
Q Consensus 238 --~~------------------~~~~~~l~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~--------- 281 (416)
+. ...++++++.+. .+.+++..+...+.++++..|+|..+.+. +
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~ 489 (742)
T TIGR01299 410 ESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPG 489 (742)
T ss_pred cccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 00 002333444332 23445667777778889999999875331 0
Q ss_pred ----------------------------cc-----c--------------------------------------------
Q 014880 282 ----------------------------RM-----G-------------------------------------------- 284 (416)
Q Consensus 282 ----------------------------g~-----~-------------------------------------------- 284 (416)
|+ +
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 569 (742)
T TIGR01299 490 DKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDS 569 (742)
T ss_pred cchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhh
Confidence 00 0
Q ss_pred --------------------h----hhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCC
Q 014880 285 --------------------Q----SAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPM 339 (416)
Q Consensus 285 --------------------~----~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 339 (416)
. ........+..++.+++.++.+++ ++++|| +++..+.++.+++.+++.+.+
T Consensus 570 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr--~~l~~~~~lsai~~ll~~~~~- 646 (742)
T TIGR01299 570 EFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRL--RMLAGSMVLSCISCFFLSFGN- 646 (742)
T ss_pred hhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHc-
Confidence 0 001223344456777888887775 566655 777777777777766655554
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 340 NMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 340 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
+...+++..++.++..+...+....+..+.+|.+.+| .++|+.+....+|..+++.+.+.+
T Consensus 647 -s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rg--ta~Gi~~~~~rlGaiigp~i~g~L 707 (742)
T TIGR01299 647 -SESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRA--TAFGFLNALCKAAAVLGILIFGSF 707 (742)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556777777777777777888888888887 777888888888888888777654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=176.87 Aligned_cols=322 Identities=12% Similarity=0.035 Sum_probs=216.1
Q ss_pred HHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHH
Q 014880 52 TDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCV 131 (416)
Q Consensus 52 ~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (416)
.|.|+|+.|.+++..+..+..++...+.|.+.||+|.||...+...+..+-.+...+.. ...+. +.++...
T Consensus 42 ~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~-------~~~~~-~~ll~~g- 112 (417)
T COG2223 42 SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAV-------TYPST-WQLLVIG- 112 (417)
T ss_pred cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHc-------cCCch-HHHHHHH-
Confidence 44599999999999999999999999999999999999976555444444444343321 11122 2323222
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHH
Q 014880 132 FAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIF 211 (416)
Q Consensus 132 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (416)
.+.|++-+.. ....+.++.+.| +|++|.+.++.. ..|+|..+...+++++....+ ...|+....+..+
T Consensus 113 --ll~G~~GasF-av~m~~~s~~fP-~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g-------~~~w~~~~~i~~~ 180 (417)
T COG2223 113 --LLLGLAGASF-AVGMPNASFFFP-KEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG-------FLAWRNVAGIYVV 180 (417)
T ss_pred --HHHhccccee-hcccccccccCC-hhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHH
Confidence 2344322221 223455666665 688999999988 899999999999988886543 1148999888877
Q ss_pred HHHHHHHHHHhhccCccccccccCCCchH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhH
Q 014880 212 IGCCFVGIFLSRTEEPRLKMGLRGNSHAR-ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKAL 290 (416)
Q Consensus 212 i~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 290 (416)
..++..+..++..++.++.+ .+.++.+ .+++.++||++.|.+++.|+.....+-++..++|.|++++++.++.+.+.
T Consensus 181 ~l~v~~v~~~~~~~d~p~~r--~~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~ 258 (417)
T COG2223 181 ALAIAAVLAWLGMNDVPEHR--ASVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGL 258 (417)
T ss_pred HHHHHHHHHHHHhCCChhhh--ccccccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHH
Confidence 77777777777776644321 1112222 67788999999999999999998888899999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcC-----CchhHHHHHHHHHHHHHHHHHHHhh
Q 014880 291 VPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILP-----MNMSAFMYVLAIFVGIANALMMVTG 363 (416)
Q Consensus 291 ~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~~~~ 363 (416)
........+.+..++.|++ +||+ +|+..+....++++...+...+ .++....+...+..++..|.-....
T Consensus 259 ~a~~f~~~g~l~Rp~GG~L---sDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsv 335 (417)
T COG2223 259 IAFLFPLIGALARPLGGWL---SDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSV 335 (417)
T ss_pred HHHHHHHHHHHHHhccchh---hhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchh
Confidence 7776666667777777766 6665 3666666666666655554443 1233443444444445555544445
Q ss_pred hhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhh
Q 014880 364 ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (416)
Q Consensus 364 ~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~ 402 (416)
..++....++ ..| .+.|+.+....+|+..-|...+.
T Consensus 336 fk~Ip~if~~-~~G--~v~G~vga~G~lGGf~lp~~~g~ 371 (417)
T COG2223 336 FKMIPVIFPK-ETG--AVTGIVGAIGGLGGFFLPLAFGV 371 (417)
T ss_pred eeechHHHHh-hhh--HHHHHHHHhccccccchhHHHHH
Confidence 5554444333 445 67787777777776555544443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-20 Score=183.88 Aligned_cols=356 Identities=12% Similarity=0.036 Sum_probs=223.7
Q ss_pred CchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHHhHHHH
Q 014880 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVL 99 (416)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr-~Grrk~~ll~~~~~ 99 (416)
+++..+...+..+.....++....+++.|+++. |.++++++++.+.+.....+..|+.|+++|| +||||. ++.+.+.
T Consensus 12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~-~~~g~~~ 90 (489)
T PRK10207 12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRT-IVLGAIV 90 (489)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHH-HHHHHHH
Confidence 344445555566777889999999999999875 9999999999999999999999999999999 999998 5566666
Q ss_pred HHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcc-chhHHHhHHHHHHHHHHHH
Q 014880 100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST-SRVVLTSCRNAFTMVANLS 178 (416)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-~r~~~~~~~~~~~~~g~~l 178 (416)
+.++...+.. .. .... .....+ .+.+++.+...+...+++.|..++++ +|++..++.+.+.++|..+
T Consensus 91 ~~~g~~~~~~-------~~-~~~~-ll~~~~---~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~ 158 (489)
T PRK10207 91 LAIGYFMTGM-------SL-LKPD-LIFIAL---GTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLI 158 (489)
T ss_pred HHHHHHHHHH-------hc-cchh-HHHHHH---HHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHH
Confidence 6666544432 11 1111 111111 24557777777777888998886544 4577788889999999999
Q ss_pred HHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCc----cccccccCCC--ch-------------
Q 014880 179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP----RLKMGLRGNS--HA------------- 239 (416)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~----~~~~~~~~~~--~~------------- 239 (416)
++.+++.+.+ ..|||+.|++.++ +++..++.+...++. +.++++++.+ ..
T Consensus 159 g~~l~g~l~~----------~~gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~ 227 (489)
T PRK10207 159 SLSLAPVIAD----------KFGYSVTYNLCGA-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFV 227 (489)
T ss_pred HHHHHHHHHH----------hhChHHHHHHHHH-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHH
Confidence 8888877763 4579999988643 333333332222211 1011000000 00
Q ss_pred ---------H--------------------HHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcccchh--
Q 014880 240 ---------R--------------------ISWAYWFKKILYYQVA--LVYMLTRLVVNVSQAYLAFYVINDLRMGQS-- 286 (416)
Q Consensus 240 ---------~--------------------~~~~~l~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-- 286 (416)
. ...++.+|+|.+.... +...+.+..+......++.|.+++.+.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~ 307 (489)
T PRK10207 228 CAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGF 307 (489)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccce
Confidence 0 0001234444433222 223444455555556777777653332110
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhH-----HHHHHHHHHHHHHHHHH-----hhcC---CchhHHHHHHHH
Q 014880 287 --AKALVPAIIYICSFIVSILLQEM-AWTGQRLK-----AYYSAGGVLWVFCGAGI-----LILP---MNMSAFMYVLAI 350 (416)
Q Consensus 287 --~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~-----~~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~ 350 (416)
....+..+..+..++.+++.+++ +++++|.+ ..+.+|.++.+++.+.+ .... ..+.+++....+
T Consensus 308 ~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~ 387 (489)
T PRK10207 308 SINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYL 387 (489)
T ss_pred EECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHH
Confidence 11233333444455566665554 55554421 13455666655554322 1121 124566667778
Q ss_pred HHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 351 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 351 l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
+.|+|.+...+...++.....|++..| .++|++++.+.+|+.+|+.+.+..
T Consensus 388 l~g~Ge~~~~~~g~~~~~~~aP~~~~g--~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 388 FQSLGELFISALGLAMIAALVPQHLMG--FILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHhHHHHHHHHHhChHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988889999999 899999999999999999888654
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-20 Score=182.65 Aligned_cols=351 Identities=11% Similarity=-0.005 Sum_probs=229.9
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHHhHHHHHH
Q 014880 26 VLYYGSGHMLNDITAACWFTYLLLFLTD---IGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVA 101 (416)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~---~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr-~Grrk~~ll~~~~~~~ 101 (416)
.+......+...+.++...+++|.|+++ .|+|+.++|++.+++.+...+++++.|+++|| +||||. +..+.+...
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~-l~~~~~~~~ 90 (475)
T TIGR00924 12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT-MVLGGIVLM 90 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH-HHHHHHHHH
Confidence 3455567777888999999999999986 59999999999999999999999999999999 899998 666666666
Q ss_pred HHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCc--cchhHHHhHHHHHHHHHHHHH
Q 014880 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS--TSRVVLTSCRNAFTMVANLSL 179 (416)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~--~~r~~~~~~~~~~~~~g~~l~ 179 (416)
++..++.. . .+.....+. ..+.+++.+...+...+++.+..+++ ++|++..++.+...++|.+++
T Consensus 91 ~g~~~~~~-------~--~~~~~~~~~----~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig 157 (475)
T TIGR00924 91 LGHFMLAM-------S--IYPDLIFYG----LGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFIS 157 (475)
T ss_pred HHHHHHHh-------c--ccHhHHHHH----HHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHH
Confidence 66544321 1 111111111 12456666666677778888877543 257888899999999999998
Q ss_pred HHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcc--cccccc----CCCchHHH-----------
Q 014880 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR--LKMGLR----GNSHARIS----------- 242 (416)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~--~~~~~~----~~~~~~~~----------- 242 (416)
+.+.+.+. +..+|++.|.+.++..++..+.. ...+++. .+++++ ++++....
T Consensus 158 ~~l~g~l~----------~~~g~~~~f~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (475)
T TIGR00924 158 PLLAGVIA----------ENYGYHVGFNLAAVGMVIGLLTF-FAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALV 226 (475)
T ss_pred HHHHHHHH----------HhcChHHHHHHHHHHHHHHHHHH-HHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHH
Confidence 88776665 24579999888765444333332 2222111 110000 00000000
Q ss_pred ------------------------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014880 243 ------------------------------------WAYW--FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMG 284 (416)
Q Consensus 243 ------------------------------------~~~l--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ 284 (416)
.++. .|.+.+..+.+...+.+..+....+.++.|..++.+.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~ 306 (475)
T TIGR00924 227 FFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHE 306 (475)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc
Confidence 0000 11112223344455555666666677788877654443
Q ss_pred hhh----hhHHHHHHHHHHHHHHHHHHH-HHHHhhhh---HH--HHHHHHHHHHHHHHHHhhc-------CCchhHHHHH
Q 014880 285 QSA----KALVPAIIYICSFIVSILLQE-MAWTGQRL---KA--YYSAGGVLWVFCGAGILIL-------PMNMSAFMYV 347 (416)
Q Consensus 285 ~~~----~~~~~~~~~i~~~~~~~l~~~-~~~~~~r~---~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 347 (416)
... .+++..+..+..++..++..+ +.++.||. +. -+.+|.++.++++....+. ...+.++++.
T Consensus 307 ~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~ 386 (475)
T TIGR00924 307 MLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVL 386 (475)
T ss_pred ccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHH
Confidence 211 456667776666666665443 34445531 12 2466777766665554421 1246777778
Q ss_pred HHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 348 LAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 348 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
..++.++|.....|...+...+..|++.+| .+.|++.+...+|..+++.+....
T Consensus 387 ~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g--~~~g~~~l~~~~g~~l~~~~~~~~ 440 (475)
T TIGR00924 387 IYLFQTLGELMISPLGLSWWTKIAPQRLMG--QMLGMWFLAQAMGSLLGGYLATFG 440 (475)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999 899999999999999998887654
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-21 Score=188.53 Aligned_cols=324 Identities=13% Similarity=0.001 Sum_probs=186.5
Q ss_pred CChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHH
Q 014880 56 LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAI 135 (416)
Q Consensus 56 ~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (416)
.+..+.|++.+++.+...+++|+.|+++||+||||. ++.+.+...++..+... .......+..+..+ .+
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~r---~l 136 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS-LLIIALLFVIGAILMGL-------AAFALSVEMLIVGR---VL 136 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH-HHHHHHHHHHHHHHHHH-------hccccchHHHHHHH---HH
Confidence 448999999999999999999999999999999887 45555555555433321 01111111222222 36
Q ss_pred HHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHH
Q 014880 136 FNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCC 215 (416)
Q Consensus 136 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 215 (416)
.+++.+...+...+++.|..+ +++|++..++.+.+..+|..+++.+. ....... ...+||+.+.+.++..++
T Consensus 137 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~------~~~~w~~~f~~~~~~~~~ 208 (481)
T TIGR00879 137 LGIGVGIASALVPMYLSEIAP-KALRGALTSLYQLAITFGILVAYGFG-SGKVSLN------NTLGWRIPLGLQLIPAGL 208 (481)
T ss_pred HHhhhhHHHhHHHHHHHccCC-hhhhhhhhhHHHHHHHHHHHHHHHHH-HHhhcCC------CCccHHHHHHHHHHHHHH
Confidence 777777777778888899875 67899999999998999988877665 0001111 356899999986555544
Q ss_pred HHHHHHhhccCcccc----cc--c-----------cCCCc-hHH------------------HHHHHHhh-----HH-HH
Q 014880 216 FVGIFLSRTEEPRLK----MG--L-----------RGNSH-ARI------------------SWAYWFKK-----IL-YY 253 (416)
Q Consensus 216 ~~~~~~~~~~e~~~~----~~--~-----------~~~~~-~~~------------------~~~~l~~~-----~~-~~ 253 (416)
.... .+..+|++.. ++ + ++++. ..+ .+++.++. ++ ++
T Consensus 209 ~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (481)
T TIGR00879 209 LFLG-LFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFL 287 (481)
T ss_pred HHHH-HhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHH
Confidence 4433 3445553210 00 0 00000 000 01122221 11 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHH
Q 014880 254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA 332 (416)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~ 332 (416)
...+..+...........+.|.+ .++.|.+..+.+.......+..+++.++.+++ +|+++| +.+..+.++.+++..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~ 364 (481)
T TIGR00879 288 GVVLQWFQQFTGINAIMYYSPTI-FENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR--PLLLIGAAGMAICLF 364 (481)
T ss_pred HHHHHHHHHHhCCeehHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHH
Confidence 11222222222222334444544 45668887767777777777788888887776 444444 666666665555544
Q ss_pred HHh---hcCCch-----hHHHHHHHHHHHHHHHHH-HHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 333 GIL---ILPMNM-----SAFMYVLAIFVGIANALM-MVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 333 ~~~---~~~~~~-----~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
.+. ....+. ....+....+.+.+.+.. .+....+..+..|++.+| ...++.+....+|+.+++.+.+.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~lg~~i~~~~~~~~ 442 (481)
T TIGR00879 365 VLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRP--KGISIAVAANWLANFIVGFLFPTM 442 (481)
T ss_pred HHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 111111 222222333333333322 234445556777888877 777888888888888777776654
Q ss_pred c
Q 014880 404 Q 404 (416)
Q Consensus 404 ~ 404 (416)
.
T Consensus 443 ~ 443 (481)
T TIGR00879 443 L 443 (481)
T ss_pred H
Confidence 3
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-20 Score=178.00 Aligned_cols=336 Identities=10% Similarity=0.031 Sum_probs=194.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCc
Q 014880 33 HMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (416)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~ 111 (416)
.+.....+.+..++++.|+++. |+|..++|++.++..+...+++|+.|+++||+||||..+..+.+...+.......
T Consensus 11 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~-- 88 (418)
T TIGR00889 11 SFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ-- 88 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH--
Confidence 3445677888889999999885 9999999999999999999999999999999987665455555544343322211
Q ss_pred cCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhh----hh----ccCCCccchhHHHhHHHHHHHHHHHHHHHHH
Q 014880 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSM----VN----CITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (416)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al----~~----~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~ 183 (416)
. .+.......+. +.++..+.......++ .. |... ..+|.|..+ .+|.++++.++
T Consensus 89 -----~--~~~~~~~~~~~----l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~-~~~~~r~~G------~lG~~ig~~l~ 150 (418)
T TIGR00889 89 -----V--TTPAGMFPVLL----ANSLAYMPTIALTNSISYANLPQAGLDVVT-DFPPIRVMG------TIGFIAAMWAV 150 (418)
T ss_pred -----h--cCHHHHHHHHH----HHHHHHccHHHHHHHHHHHHHhhcCCCchh-cCCCeeeeh------hHHHHHHHHHH
Confidence 0 11121222222 2333332222222222 11 2221 223444333 35555555444
Q ss_pred HHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCC---chHHHHHHHHhhHHHHHHHHHHH
Q 014880 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNS---HARISWAYWFKKILYYQVALVYM 260 (416)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~l~~~ 260 (416)
+.+ . ....|+ ++++.+++.++..+. .+..||+++++++++.+ ..+...++++|||+++.+.+..+
T Consensus 151 g~l----~------~~~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 218 (418)
T TIGR00889 151 SLL----D------IELSNI-QLYITAGSSALLGVF-ALTLPDIPVAKSTAKMSIKVMLGLDAFILFKNKRMAIFFFFSM 218 (418)
T ss_pred HHh----c------ccchhH-HHHHHHHHHHHHHHH-HhcCCCCCCCccccccCHHHHhhhhHHHHhcCCCeeeHHHHHH
Confidence 433 1 122333 344554555544443 34556643222111111 11123456889998776666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccch--------hhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHH
Q 014880 261 LTRLVVNVSQAYLAFYVINDLRMGQ--------SAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG 331 (416)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~ 331 (416)
+..........+++.|+.+ .|.++ +..+....+..+..+++.+..+++ +|+++ |+.+.++.++..++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~--r~~l~~~~~~~~v~~ 295 (418)
T TIGR00889 219 LLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGI--KKVMLLSLVAWALRF 295 (418)
T ss_pred HHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHH
Confidence 6555555566777888765 34332 445666666666777777776665 34444 377777777766665
Q ss_pred HHHhhcCCc--hhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHH-----HHHHHHHHHHHHHHhhhc
Q 014880 332 AGILILPMN--MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLS-----FLDKMSCGIAVYVLQSYQ 404 (416)
Q Consensus 332 ~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~-----~~~~~g~~ig~~l~~~~~ 404 (416)
..+.....+ +.+.+++..++.|++.+...+....+..+..|++.+| .++|+.+ ++..+|+.+++.+.++++
T Consensus 296 ~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g--~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g 373 (418)
T TIGR00889 296 GFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRA--SAQGLFTLMCNGFGSLLGYILSGVMVEKMF 373 (418)
T ss_pred HHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 444443211 2344556677888888887777777777888888877 5555553 444556666677777655
Q ss_pred c
Q 014880 405 S 405 (416)
Q Consensus 405 ~ 405 (416)
+
T Consensus 374 ~ 374 (418)
T TIGR00889 374 A 374 (418)
T ss_pred c
Confidence 3
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-20 Score=173.06 Aligned_cols=345 Identities=12% Similarity=0.088 Sum_probs=206.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccC
Q 014880 34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP 113 (416)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~ 113 (416)
+.....++...++++.|+++.|+|++|+|.+.++..+...+++|++|.++||++++|..+....+...+......
T Consensus 12 f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~----- 86 (400)
T PF03825_consen 12 FLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA----- 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH-----
Confidence 444567778889999999999999999999999999999999999999999987666545444444333332221
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHH-HHHHHHhccc
Q 014880 114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI-AFIVFSVSTA 192 (416)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~-~~~l~~~~~~ 192 (416)
...+.++...... ++.+.+....+-..++.-+...+ +++-.+-....+.+|-+++... ...+....+
T Consensus 87 ----~~~~f~~~~~~~~----l~~~~~~p~~pl~dsi~~~~~~~---~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~- 154 (400)
T PF03825_consen 87 ----FSSSFWWLFVIML----LFSFFFSPTMPLSDSIALSYLGD---RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLG- 154 (400)
T ss_pred ----HhccHHHHHHHHH----HHHHHHccHHHHHHHHHHHHccc---ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhc-
Confidence 1122232222222 33333433333334444433321 2222222334445555444322 112222111
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccc-ccc-cCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 014880 193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK-MGL-RGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQ 270 (416)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~-~~~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 270 (416)
..+..+.+++.+...++....... .|+.+.+ +++ +.++....+..+++|||++....+..++.........
T Consensus 155 ------~~~~~~~~~i~~~~~~ll~~~~l~-lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~ 227 (400)
T PF03825_consen 155 ------ISGTSLIFYIAAILSLLLAGFALF-LPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYY 227 (400)
T ss_pred ------cccccHHHHHHHHHHHHHHHHHHh-CCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 112223444444444444333333 3332211 111 1112222333579999998877777777777888888
Q ss_pred HHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcCCchhHHHHH-
Q 014880 271 AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYV- 347 (416)
Q Consensus 271 ~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 347 (416)
.|.+.|+++.-+.+....+....+..++.++.....+++ -+|+ ++.+.++.+..++-..++....+ +.+....
T Consensus 228 ~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~---~~r~g~~~ll~~a~~~~~vR~~l~a~~~~-~~~~~~~~ 303 (400)
T PF03825_consen 228 TFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRF---LKRFGIKWLLLLALVAYAVRWLLYAYFSD-PWPFIVAL 303 (400)
T ss_pred HHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHH
Confidence 999999877644666666666666556666665555544 4444 57888888887777766666532 3222222
Q ss_pred ---HHHHHHHHHHHHHHhhhhhheeeecccccc--chhhhhH-HHHHHHHHHHHHHHHHhhhccc
Q 014880 348 ---LAIFVGIANALMMVTGISMQNVLVGEDLSG--CAFVCGT-LSFLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 348 ---~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G--~g~~~~~-~~~~~~~g~~ig~~l~~~~~~~ 406 (416)
...+.|+..+........++.+..|++.++ ++.+.++ ..++..+|+.++|++.++++..
T Consensus 304 ~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~ 368 (400)
T PF03825_consen 304 QLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR 368 (400)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence 235689999999988999988888887765 4444443 3577788888899999988755
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-20 Score=182.62 Aligned_cols=365 Identities=12% Similarity=0.029 Sum_probs=203.4
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHh
Q 014880 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI--------GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGA 95 (416)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~--------g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~ 95 (416)
+..+...++.+..........+..+.+.++. |.++.+.+++.+++.+...+++++.|+++||+||||++ +.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~-~~ 90 (479)
T PRK10077 12 SITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL-KI 90 (479)
T ss_pred HHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HH
Confidence 3334444454444443333444444443333 88999999999999999999999999999999999984 45
Q ss_pred HHHHHHHHHHHhhCCccCcc--cccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHH
Q 014880 96 GSVLVAVSFSSVFGGCMPCR--ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM 173 (416)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~ 173 (416)
+..++.++...... +.. .....+.......+.+.+.+.|++.+...+...+++.|+.+ +++|++..+..+.+..
T Consensus 91 ~~~l~~i~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~-~~~rg~~~~~~~~~~~ 166 (479)
T PRK10077 91 AAVLFFISALGSAW---PEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAP-AHIRGKLVSFNQFAII 166 (479)
T ss_pred HHHHHHHHHHHHHh---hccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCC-hhhhhHHHHHHHHHHH
Confidence 55555444333221 000 00000111111222233346778888888888999999986 5789999999998888
Q ss_pred HHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccc---cccC-----------CCch
Q 014880 174 VANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---GLRG-----------NSHA 239 (416)
Q Consensus 174 ~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~---~~~~-----------~~~~ 239 (416)
+|.++++.++..+........ ....+||+.+.+.++..++..+. .+..||++... ++++ .++.
T Consensus 167 ~G~~~~~~~~~~~~~~~~~~~--~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 243 (479)
T PRK10077 167 FGQLVVYFVNYFIARSGDASW--LNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSRGKQEQAEGILRKIMGNTLA 243 (479)
T ss_pred HHHHHHHHHHHHHhccCcccc--cccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhH
Confidence 888877665544432111000 12468999999887777666544 34566644210 0000 0000
Q ss_pred H---HHHHHHHhh-----HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHH
Q 014880 240 R---ISWAYWFKK-----ILYYQVALVY---------MLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIV 302 (416)
Q Consensus 240 ~---~~~~~l~~~-----~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~ 302 (416)
+ +..++..++ +.++...... +......+....+.|.+. ++.|.+............+..+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~-~~~g~~~~~~~~~~~~~~~~~~i~ 322 (479)
T PRK10077 244 TQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIF-KTLGASTDIALLQTIIVGVINLTF 322 (479)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHH-HHcCCCCchHHHHHHHHHHHHHHH
Confidence 1 111222221 1111110000 001111112233445444 456877665555555566667777
Q ss_pred HHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC-Cch-hHHHHHHHHHHHHHHHHH-HHhhhhhheeeeccccccc
Q 014880 303 SILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP-MNM-SAFMYVLAIFVGIANALM-MVTGISMQNVLVGEDLSGC 378 (416)
Q Consensus 303 ~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~G~ 378 (416)
.++.+++ +|+++| +.++.+..+.+++...+.... .+. ........++.+.+.+.. .+..+.+..+..|++.+|
T Consensus 323 ~~~~g~l~dr~g~r--~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~- 399 (479)
T PRK10077 323 TVLAIMTVDKFGRK--PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG- 399 (479)
T ss_pred HHHHHHHHHHhcCh--HHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHH-
Confidence 7777765 444443 667777766666655543221 111 122223344445544432 245566777888888888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHh
Q 014880 379 AFVCGTLSFLDKMSCGIAVYVLQ 401 (416)
Q Consensus 379 g~~~~~~~~~~~~g~~ig~~l~~ 401 (416)
.+.|+.+....+|..+++.+..
T Consensus 400 -~~~g~~~~~~~~g~~~~~~~~p 421 (479)
T PRK10077 400 -KALAIAVAAQWIANYFVSWTFP 421 (479)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhH
Confidence 7778777777777777755544
|
|
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-24 Score=181.29 Aligned_cols=337 Identities=46% Similarity=0.841 Sum_probs=250.7
Q ss_pred CCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhc---------ccCC
Q 014880 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID---------RFGH 88 (416)
Q Consensus 18 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsD---------r~Gr 88 (416)
.++..++..++|+.||+.+++...++.+|+..|+++.|.++.....++.++++.+++..|+.|..+| |+||
T Consensus 11 tkPigr~svf~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~ 90 (412)
T KOG4830|consen 11 TKPIGRTSVFAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGR 90 (412)
T ss_pred CCcccceeeeeechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcc
Confidence 4668888999999999999999999999999999999999999999999999999999999997766 8999
Q ss_pred chhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHH
Q 014880 89 FKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR 168 (416)
Q Consensus 89 rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~ 168 (416)
|+.|-..|..+..+++...+. ... ++..+++. + -+.
T Consensus 91 ~~~wh~~gt~lVslSf~~ifg---------~a~-------------iF~~~~~~----------------s------~va 126 (412)
T KOG4830|consen 91 RMSWHLIGTVLVSLSFPMIFG---------FAK-------------IFLCKSTT----------------S------EVA 126 (412)
T ss_pred eeeeeecccEEEEEechhhcC---------cee-------------EEeeccHH----------------H------HHH
Confidence 999988888766665544331 000 00000000 0 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc-CchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHH
Q 014880 169 NAFTMVANLSLYAIAFIVFSVSTAKTH-ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWF 247 (416)
Q Consensus 169 ~~~~~~g~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~ 247 (416)
+.+.. .+...+.+ +++... .+...-+||..+....+++....+.+.+.|||+..-..++.+..+-.|...|
T Consensus 127 nlgly-------aialvVFg-v~~A~~ke~tea~~R~~~~~~v~lG~~~~~vF~~~TrEP~~~~~~~~s~~~Rm~W~~WF 198 (412)
T KOG4830|consen 127 NLGLY-------AIALVVFG-VGWASVKESTEALIRLAGWLVVVLGITVAFVFYAFTREPTNSFSSDASELVRMHWTSWF 198 (412)
T ss_pred HhHHH-------HHHhheee-eeeecccccHHHHHHHhhhheeeeceeEEEEEeecccCcccccCcchhhhhcccchhhh
Confidence 11111 00111111 111111 1233456777777766776666666677888776544444445566788889
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 014880 248 KKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLW 327 (416)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~ 327 (416)
++-.++.+.+.+.+.....+..+.|+|.|..+++.+.++..++++++..++++..+.+.....+-++|.|..+..|.+..
T Consensus 199 ~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v~~eipwngkrlKayYsaGgiiw 278 (412)
T KOG4830|consen 199 GHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMVNSEIPWNGKRLKAYYSAGGIIW 278 (412)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhhcccCCcCcceeeeeeecccHHH
Confidence 99889999999999999999999999999999999998888899999888888777665433344555567778888888
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 014880 328 VFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~~ 406 (416)
..|...+.+.+.+-...++...++.|+.++.......++..++.+++.++.++.+|..++..++..+++=.+++...|+
T Consensus 279 ifcga~ilLlpr~i~symyAisvfIGIAnAimlvtslsitavli~~~~~~~aFv~GamSF~DKlS~GiA~~lie~~~~a 357 (412)
T KOG4830|consen 279 IFCGAVILLLPRGIKSYMYAISVFIGIANAIMLVTSLSITAVLINKNTESGAFVYGAMSFFDKLSNGIAYQLIELWTPA 357 (412)
T ss_pred HHhhhheeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEEehHHHHHhhcccHHHHHHHhcCCc
Confidence 8887777777755556677788899999999988888888888888877777999999999999999999999988887
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-19 Score=165.13 Aligned_cols=341 Identities=12% Similarity=0.102 Sum_probs=242.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccC-----CchhhHHhHHHHHHHHHHHhhCCccCccccc-----c
Q 014880 50 FLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFG-----HFKIWHGAGSVLVAVSFSSVFGGCMPCRILS-----T 119 (416)
Q Consensus 50 ~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~G-----rrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~-----~ 119 (416)
...|+++++..++.++....+.. ...|.+|+.||+.+ ||.||+..|......+....... ...+.. .
T Consensus 6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a--~~~l~~~~~~~~ 82 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFA--LLLLAESGQQSS 82 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHH--HHHHcccccccc
Confidence 34667999999999988877654 57999999999999 99999998888776654332100 000111 1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchh
Q 014880 120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199 (416)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~ 199 (416)
.+.+.....-.+...++|+|.....+++.++..|.++ +|+|++..++.+.+..+|.+++..+.+.+..-+. +
T Consensus 83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~-e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s-------~ 154 (403)
T PF03209_consen 83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAP-EERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS-------P 154 (403)
T ss_pred cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCC-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC-------H
Confidence 1222222333333347889999999999999999985 7899999999999999998888777666654322 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCccccc----cccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014880 200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM----GLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF 275 (416)
Q Consensus 200 ~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 275 (416)
..-...+...+++.+...++..+.. |++.++ +++++.+.++.++++.++|+-+.+....++....+..-...+-+
T Consensus 155 ~rL~~v~~~~a~i~~~l~~ia~wg~-E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEP 233 (403)
T PF03209_consen 155 ERLIQVIQGVALIALLLNLIALWGQ-EPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEP 233 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCC
Confidence 2333334444445555555554444 433322 22344567788899999999888888888888888887888899
Q ss_pred HHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC-CchhHHHHHHHHHHH
Q 014880 276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP-MNMSAFMYVLAIFVG 353 (416)
Q Consensus 276 ~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g 353 (416)
|--|.+|++..++.-+......+.+++..+.+++ .+..+| ++...++...++.++.++.... .++.+.+-...++.|
T Consensus 234 ygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~-~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G 312 (403)
T PF03209_consen 234 YGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGK-KRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG 312 (403)
T ss_pred chhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 9999999999999888888888999998888775 211122 4566677777676666554433 346777788889999
Q ss_pred HHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 014880 354 IANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (416)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~ 405 (416)
++.|.......+...+..++++.| .+.|.+..+|.++.+++..+-+..-|
T Consensus 313 ~g~G~f~vgals~mM~lt~~~~aG--~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 313 LGNGLFTVGALSLMMDLTSAGRAG--LFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred HhhhHHHHHHHHHHHhCCCCcchh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999877777777888888888 88898888888777766665554433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-20 Score=171.70 Aligned_cols=357 Identities=11% Similarity=0.079 Sum_probs=207.7
Q ss_pred CCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHH
Q 014880 21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (416)
Q Consensus 21 ~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~ 99 (416)
.+.++.+.++.-.+...+.++...+|++.|++|. |+|++++|.+.++..+...+.||+.|.++||.|.||..+..-.+.
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l 83 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAIL 83 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHH
Confidence 3455667778888888888999999999999985 999999999999999999999999999999999888643332222
Q ss_pred HH-HHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHH
Q 014880 100 VA-VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 178 (416)
Q Consensus 100 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l 178 (416)
.. .+....+. ..|. ...+.+.. ..+.....+..+.+......+++.+..+ +.+-=.|-....+.+|.++
T Consensus 84 ~~l~~pff~~v-~~pl---l~~n~~lg---~iig~i~l~~~f~~~~~~~Ea~~er~sr---~~~feYG~~R~wGSig~ai 153 (412)
T PF01306_consen 84 LLLFGPFFIYV-FGPL---LQSNFWLG---AIIGGIYLGLVFNAGVPLSEAYAERVSR---RNGFEYGRARMWGSIGFAI 153 (412)
T ss_dssp HHTCHHHHHHT-HHHH---HHTT-HHH---HHHTTTTTTTTTTTHHHHHHHHHHHHHH---HHSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHH---HHHHHHHH---HHHHHHHHHHHHcccchHHHHHHHHHHH---HhcCCcchHHHHhhHHHHH
Confidence 11 12111111 0010 00111100 0000001121122222222233222211 1111123344566677777
Q ss_pred HHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccc---c-ccCC--CchHHHHHHHHhhHHH
Q 014880 179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---G-LRGN--SHARISWAYWFKKILY 252 (416)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~---~-~~~~--~~~~~~~~~l~~~~~~ 252 (416)
+..+++.+... +-+..+++....+++..++..+..++++++. + ++++ +...+...+++|+|++
T Consensus 154 ~s~~~G~L~~i-----------~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~f 222 (412)
T PF01306_consen 154 ASLLAGILFNI-----------NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNF 222 (412)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHH
T ss_pred HHHHhheeeee-----------CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhH
Confidence 76677776643 2244555554545544444444333322211 1 1111 1112335688999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHH
Q 014880 253 YQVALVYMLTRLVVNVSQAYLAFYVINDL---RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWV 328 (416)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~ 328 (416)
|.+.+........++.+...+|.|..... +.+.+..|...++..+..++...+.+++ +|++- |+.++++.++++
T Consensus 223 w~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~--k~~Lllag~i~~ 300 (412)
T PF01306_consen 223 WFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGA--KNLLLLAGVIMA 300 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcCh--HhHHHHHHHHHH
Confidence 98877777766677777777888876543 3445557777777766677666666554 44444 478888877777
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHH-HHHHHHHHH----HHHHHHhhh
Q 014880 329 FCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTL-SFLDKMSCG----IAVYVLQSY 403 (416)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~-~~~~~~g~~----ig~~l~~~~ 403 (416)
+-.....+.+ +++.+...-.+.++..+.......-+..+..|+|... ..+.+. +++..+|.. ++|.+.|++
T Consensus 301 iRi~~~~~~~--~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsA--t~y~v~~~~~~~~~~~i~s~~~G~lyd~~ 376 (412)
T PF01306_consen 301 IRIIGSGFAT--NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSA--TLYLVGFQFAKQIGIIILSPLAGYLYDRI 376 (412)
T ss_dssp HHHHHHHT----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHH--HHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHH--HHHHHHHHHHHHHHHHHHhhhHHhhHhhc
Confidence 7766665554 7778888889999999998888888998888888866 555553 344444444 445555555
Q ss_pred c
Q 014880 404 Q 404 (416)
Q Consensus 404 ~ 404 (416)
|
T Consensus 377 G 377 (412)
T PF01306_consen 377 G 377 (412)
T ss_dssp H
T ss_pred C
Confidence 4
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-20 Score=177.61 Aligned_cols=334 Identities=12% Similarity=0.095 Sum_probs=231.3
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHH
Q 014880 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA 134 (416)
Q Consensus 55 g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (416)
+.|+.+-|++.+.....+.+++.+.|++.||+|-||++. .+.++.+++.++. |. ....+.. . ..+++.
T Consensus 69 ~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~-~~~~~sa~~t~l~-----P~--aa~~~~~-~---~~~~R~ 136 (466)
T KOG2532|consen 69 DWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFF-ISGLISALLTLLT-----PL--AASIGFY-L---LLVLRF 136 (466)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHH-HHHHHHHHHHHHH-----HH--HHHhcch-h---hHHHHH
Confidence 678899999999999999999999999999999999854 4444444443332 31 1112222 2 233334
Q ss_pred HHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHH
Q 014880 135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC 214 (416)
Q Consensus 135 ~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 214 (416)
+.|++.+...++...+...+.| ++||++..++...+..+|.++...+++.+.. ...||+..|++.+++++
T Consensus 137 lqGl~~g~~~pa~~~i~~~W~P-~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~---------s~~GW~sifY~~g~~g~ 206 (466)
T KOG2532|consen 137 LQGLGQGVLFPAIGSILAKWAP-PNERSTFIAILTAGSQLGTIITMPVSGLLCE---------SSLGWPSIFYVFGIVGL 206 (466)
T ss_pred HhHHHHhHHHhhhhceeeeECC-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc---------cCCCCchHHHHHHHHHH
Confidence 6778888888888888898886 7899999999999999998887666666653 24799999999999998
Q ss_pred HHHHHHHhhccCcccccc-----c-----cCC------CchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014880 215 CFVGIFLSRTEEPRLKMG-----L-----RGN------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI 278 (416)
Q Consensus 215 ~~~~~~~~~~~e~~~~~~-----~-----~~~------~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 278 (416)
+..++.+++..|++.+++ | +++ ++.+.+++++++++.+|.+.+..+........+..|.|.|+.
T Consensus 207 i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~ 286 (466)
T KOG2532|consen 207 IWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLK 286 (466)
T ss_pred HHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 888777666665433211 0 000 112458999999999999999999999999999999999999
Q ss_pred hhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhh-----h-HHH-HHHHHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 014880 279 NDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQR-----L-KAY-YSAGGVLWVFCGAGILILPMNMSAFMYVLAI 350 (416)
Q Consensus 279 ~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r-----~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (416)
+.+|++..+.|++.++..+...+..+..|.+ |++..| . +|. -.++....+++++.+.+.+.++.+..++++
T Consensus 287 ~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l- 365 (466)
T KOG2532|consen 287 EVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILL- 365 (466)
T ss_pred HHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHH-
Confidence 9999999999999988888888888888776 443331 1 222 233444445555555555533332222222
Q ss_pred HHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhccchhhhhhh
Q 014880 351 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSKLCRLCFK 413 (416)
Q Consensus 351 l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~ 413 (416)
..+.+.................+++.| ...|+.++...+.+.++|.+++.+-.++.+.-|+
T Consensus 366 ~~~~~~~g~~~~Gf~~~~~~~apq~a~--~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~ 426 (466)
T KOG2532|consen 366 TIAIGLSGFNISGFYKNHQDIAPQHAG--FVMGIINFVGALAGFIAPLLVGIIVTDNTREEWR 426 (466)
T ss_pred HHHHHHcccchhhhHhhhhhccchHHH--HHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHH
Confidence 122222222212222222221355666 8999999999999999999999887432555554
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-19 Score=175.14 Aligned_cols=351 Identities=13% Similarity=0.016 Sum_probs=214.1
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHHhHHHHHHHHH
Q 014880 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSF 104 (416)
Q Consensus 27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr-~Grrk~~ll~~~~~~~~~~ 104 (416)
+......+.....++....+++.|+++. |+++.+.+++.+.+........++.|+++|| +||||. +..+.+...++.
T Consensus 24 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~-~~~g~~~~~ig~ 102 (500)
T PRK09584 24 YLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV-IMLGAIVLAIGY 102 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHH
Confidence 3444556667788888888999999775 9999999998888776666677899999999 599987 555655555554
Q ss_pred HHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcc-chhHHHhHHHHHHHHHHHHHHHHH
Q 014880 105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST-SRVVLTSCRNAFTMVANLSLYAIA 183 (416)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-~r~~~~~~~~~~~~~g~~l~~~~~ 183 (416)
.++.. .. .......+ ...+.+++.+...+...+++.+..++++ +|++..++.+.+.++|..+++.+.
T Consensus 103 ~l~~~-------~~-~~~~~l~~----~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~ 170 (500)
T PRK09584 103 ALVAW-------SG-HDAGIVYM----GMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLAT 170 (500)
T ss_pred HHHHH-------hc-ccHHHHHH----HHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 44321 11 11111111 1124556666666666788888875433 345667777888999998888777
Q ss_pred HHHHHhccccccCchhhHHHHHHHHHHHHHHH---HHHHHHhhccCcccccccc--CCCchH------------------
Q 014880 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCC---FVGIFLSRTEEPRLKMGLR--GNSHAR------------------ 240 (416)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~e~~~~~~~~--~~~~~~------------------ 240 (416)
+.+. +..|||+.|.+.++..++ ..+......+|...+++++ +..+..
T Consensus 171 g~l~----------~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (500)
T PRK09584 171 PWLA----------AKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLH 240 (500)
T ss_pred HHHH----------HhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 7665 356899999887643333 2222233344421111110 000000
Q ss_pred ----------------------H--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcccch------hhh
Q 014880 241 ----------------------I--SWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIN--DLRMGQ------SAK 288 (416)
Q Consensus 241 ----------------------~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~g~~~------~~~ 288 (416)
. ..++.- +++.. ..+..++....++......+.++.. +.+.+. ...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~ 318 (500)
T PRK09584 241 NQEIARMALGVVALGIVVIFGKEAFAMKGAA-RRKMI-VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEP 318 (500)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCHHH-HHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECH
Confidence 0 000011 11111 2222233334444444445555332 111111 113
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHhhhh--HHHHHHHHHHHHHHHHHHhhcCC-------chhHHHHHHHHHHHHHHHH
Q 014880 289 ALVPAIIYICSFIVSILLQE-MAWTGQRL--KAYYSAGGVLWVFCGAGILILPM-------NMSAFMYVLAIFVGIANAL 358 (416)
Q Consensus 289 ~~~~~~~~i~~~~~~~l~~~-~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~ 358 (416)
+.+..+..+..++..++..+ ++++.||. .+.+.++.++.++++..+..... -+.++.+...++.++|...
T Consensus 319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~ 398 (500)
T PRK09584 319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM 398 (500)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence 45555666556666665544 35556664 45677777777777666543321 1245666778899999999
Q ss_pred HHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhc
Q 014880 359 MMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (416)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~ 404 (416)
..|...++..+..|++.+| +++|.+.+...+|+.+++.+.+...
T Consensus 399 ~~p~g~s~~~~~aP~~~rg--~~~g~~~l~~a~g~~~~g~~~~~~~ 442 (500)
T PRK09584 399 ISGLGLAMVAQLVPQRLMG--FIMGSWFLTTAGAALIAGYVANLMA 442 (500)
T ss_pred HhHHHHHHHHHhCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999 8999999888899999988886543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-19 Score=178.17 Aligned_cols=318 Identities=14% Similarity=0.104 Sum_probs=200.2
Q ss_pred HHHHHHHhCCC---hHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchh
Q 014880 47 LLLFLTDIGLS---PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK 123 (416)
Q Consensus 47 l~~~~~~~g~s---~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (416)
.+...+|.|++ +.+.+++.+++.+...+++++.|+++||+||||. ++.+.+...++.+.... . .+ .
T Consensus 112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~-~~~~~~~~~i~~~~~~~-------~--~~-~ 180 (505)
T TIGR00898 112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKV-LLLSTLVTAVSGVLTAF-------S--PN-Y 180 (505)
T ss_pred cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHH-HHHHHHHHHHHHHHHHH-------c--cc-H
Confidence 34444455888 8999999999999999999999999999999987 44555555544433221 1 12 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHH
Q 014880 124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR 203 (416)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 203 (416)
+.+...+ .+.|++.+...+...+++.|+.+ +++|++..+....+..+|.++++.++..+ .+||
T Consensus 181 ~~~~~~r---~l~G~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------------~~wr 243 (505)
T TIGR00898 181 TVFLVFR---LLVGMGIGGIWVQAVVLNTEFLP-KKQRAIVGTLIQVFFSLGLVLLPLVAYFI-------------PDWR 243 (505)
T ss_pred HHHHHHH---HHHHhhccchHHHHHHHhheecC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHh-------------hHHH
Confidence 2222222 36677777777778888999885 67899988888777877777655544222 2399
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCcccc------ccc-------------------------cCC---CchHHHHHHHHhh
Q 014880 204 WIAYSSIFIGCCFVGIFLSRTEEPRLK------MGL-------------------------RGN---SHARISWAYWFKK 249 (416)
Q Consensus 204 ~~~~~~~~i~~~~~~~~~~~~~e~~~~------~~~-------------------------~~~---~~~~~~~~~l~~~ 249 (416)
+.+.+.+++.++..+.. +..||+++. .++ +++ +..+..+++++|+
T Consensus 244 ~~~~~~~i~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 322 (505)
T TIGR00898 244 WLQLAVSLPTFLFFLLS-WFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRT 322 (505)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCC
Confidence 99998887776665554 456664310 000 000 0001255778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHH
Q 014880 250 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWV 328 (416)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~ 328 (416)
|+++...+...+.++...... +...+..+..+.+.... ..+..+..+++.++.+++ +|++|| +.+.++..+.+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~l~dr~grr--~~~~~~~~~~~ 396 (505)
T TIGR00898 323 PNLRKTTLCLMMLWFTTAFSY-YGLVLDLGNLGGNIYLD---LFISGLVELPAKLITLLLIDRLGRR--YTMAASLLLAG 396 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHhccccccCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHH
Confidence 887766555444434333222 22222233344443222 223344556666666655 455554 66666666666
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHh
Q 014880 329 FCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (416)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~ 401 (416)
++.+.+.+.+....+...+..++.+++.+...+....+..|..|++.++ ...|+.+....+|+.+++.+.+
T Consensus 397 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 397 VALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRN--LGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHh--hhHhHHHHHHHHHHHHHhHHHH
Confidence 6666555555333344445556667777777777777888888888887 6778888888899999988876
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-19 Score=174.63 Aligned_cols=371 Identities=13% Similarity=0.050 Sum_probs=203.9
Q ss_pred CCCCchhhhh---hcccchHHHHHHHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCch
Q 014880 19 QPVGRWSVLY---YGSGHMLNDITAACWFTYLLLFLTDI-----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFK 90 (416)
Q Consensus 19 ~~~~~~~~~~---~~~g~~~~~~~~~~~~~~l~~~~~~~-----g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk 90 (416)
.+..+.+... -+++.+.............+..-.+. +.+..+.+++.+...+...+++++.|+++||+|||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~ 87 (502)
T TIGR00887 8 APFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKR 87 (502)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 3444444433 33443433333344444455433321 356678899999999999999999999999999998
Q ss_pred hhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHH
Q 014880 91 IWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA 170 (416)
Q Consensus 91 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~ 170 (416)
. +..+.+...++..+... .+ ..........+.+.+.+.|++.+...+...+++.|..+ +++|++..++.+.
T Consensus 88 ~-~~~~~~~~~v~~~~~~~--~~-----~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p-~~~Rg~~~~~~~~ 158 (502)
T TIGR00887 88 V-YGMELIIMIIATVASGL--SP-----GSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFAT-KKWRGAMMAAVFA 158 (502)
T ss_pred H-HHHHHHHHHHHHHHHHH--cc-----CcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcC-hhhHHHHHHHHHH
Confidence 7 44454444444333221 01 11111011122233346778888888888899999886 6889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc---cc----------CchhhHHHHHHHHHHHHHHHHHHHHHhhccCccc------cc
Q 014880 171 FTMVANLSLYAIAFIVFSVSTAK---TH----------ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL------KM 231 (416)
Q Consensus 171 ~~~~g~~l~~~~~~~l~~~~~~~---~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~------~~ 231 (416)
...+|.++++.+...+...+... .+ ...+++||+++.+.++.+++..+. .+++||+++ ++
T Consensus 159 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~-~~~lpESpr~l~~~~~~ 237 (502)
T TIGR00887 159 MQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF-RLTIPETPRYTADVAKD 237 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHhCcc
Confidence 99999988887776655432210 00 001347999997776655554443 455677532 00
Q ss_pred cc---------------cCC----------CchHHHHHHHHhhH---HHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Q 014880 232 GL---------------RGN----------SHARISWAYWFKKI---LYYQV----ALVYMLTRLVVNVSQAYLAFYVIN 279 (416)
Q Consensus 232 ~~---------------~~~----------~~~~~~~~~l~~~~---~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~ 279 (416)
++ +++ ++.+.+++++++++ +.+.. ....+......++...+.|.++.
T Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~- 316 (502)
T TIGR00887 238 VEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILS- 316 (502)
T ss_pred hHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHH-
Confidence 00 000 00123566776532 22111 12223333344455566778775
Q ss_pred hcccchhhhhH------------HHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC--CchhHH
Q 014880 280 DLRMGQSAKAL------------VPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP--MNMSAF 344 (416)
Q Consensus 280 ~~g~~~~~~~~------------~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 344 (416)
+.|.+....+. ...+..++.+++.++.+++ +|++|| +.++.+..+..++...+.... .+....
T Consensus 317 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR--~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 394 (502)
T TIGR00887 317 AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRK--PIQLMGFFILTVLFFVLGFAYNHLSTHGF 394 (502)
T ss_pred HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch--hHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 45765432110 1222233455566665554 555554 555566555554443333221 011111
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhc
Q 014880 345 MYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (416)
Q Consensus 345 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~ 404 (416)
.....+...+......+..+.+..|..|.+.+| ...++.+....+++.+++.+.+.+-
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~--~~~g~~~~~~~~~~~~~~~~~~~l~ 452 (502)
T TIGR00887 395 LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRS--TAHGISAASGKAGAIIGQFGFLYLA 452 (502)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhhccCchhHHH--HHHHHHHHHhhhHHHHHHHHhhhhh
Confidence 111111111211122344555667888888888 7778888888888888887776553
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.6e-18 Score=152.33 Aligned_cols=321 Identities=12% Similarity=0.051 Sum_probs=211.4
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccc
Q 014880 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (416)
Q Consensus 38 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~ 117 (416)
+......+.+|...+-.+++..+++++..++...+.+.+.+.|++.||+|+|+- ++.|..+++++..+.+ | .
T Consensus 27 ~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~g-i~lgL~l~avg~~lF~----p---A 98 (422)
T COG0738 27 FITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAG-IVLGLLLYAVGAALFW----P---A 98 (422)
T ss_pred HHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHH-HHHHHHHHHHHHHHHh----h---h
Confidence 333334455666555569999999999999999999999999999999999998 7777777777765544 3 1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcc--cccc
Q 014880 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST--AKTH 195 (416)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~--~~~~ 195 (416)
+.......++. ...+.+.|.+..+++.+.++..+.++ ++..+-....+.+..+|+++++.++..++.+-. ..+.
T Consensus 99 a~~~~y~~FL~---~lFila~Gi~~LetaaNp~v~~lg~~-~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~ 174 (422)
T COG0738 99 ASSKSYGFFLV---ALFILASGIGLLETAANPYVTLLGKP-ESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSA 174 (422)
T ss_pred hhhhhHHHHHH---HHHHHHhhhHHHHhccchHHHHhCCc-hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCH
Confidence 22222222222 22356778888899999999988754 344444567788899999998888877765310 0000
Q ss_pred C-------chhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccc-cCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 014880 196 A-------DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHARISWAYWFKKILYYQVALVYMLTRLVVN 267 (416)
Q Consensus 196 ~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 267 (416)
. .....+++++...+...+++.+... ..|-|+.+++. ++.+.......+++|||+++...+..+++.....
T Consensus 175 ~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~-~~k~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Ev 253 (422)
T COG0738 175 AQILAIKGADASSVQFPYLILAGLLVLLAVLIL-LSKLPDLQVAAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEV 253 (422)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-hccCCcCCcccccccccccchHHHHHhChHHHHHHHHHHHHHhHHH
Confidence 0 0112367777766655555544432 22322222211 1111111156789999999988888999888888
Q ss_pred HHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHH
Q 014880 268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMY 346 (416)
Q Consensus 268 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (416)
....+++.|+.|..|.+..+.+...+...++.++|.++..++ +++.. .|.+....+...+-+....+.+ +.+ ..
T Consensus 254 a~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~--~k~Laf~a~~~ill~~~~~l~~--g~v-~~ 328 (422)
T COG0738 254 AIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKP--EKYLAFYALIAILLLLAVALIG--GVV-AL 328 (422)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHhc--ChH-HH
Confidence 889999999999889898888888888888888888766443 33333 2554444433232223333333 333 34
Q ss_pred HHHHHHHHHHHHHHHhhhhhheeeeccccc
Q 014880 347 VLAIFVGIANALMMVTGISMQNVLVGEDLS 376 (416)
Q Consensus 347 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (416)
...++.|+.+++.+|+..+...+..|++.+
T Consensus 329 ~~l~~ig~F~simfPTIfslal~~l~~~ts 358 (422)
T COG0738 329 YALFLIGLFNSIMFPTIFSLALKNLGEHTS 358 (422)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhccCcccc
Confidence 566788999999999999887766664443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-18 Score=150.78 Aligned_cols=328 Identities=13% Similarity=0.118 Sum_probs=226.3
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCccccccc
Q 014880 41 ACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (416)
Q Consensus 41 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (416)
..+.+.++..-.|.|+|.+.+|++.++..++-++.+|+..+++.|+|.+|. +..+.+...++..+=- . .
T Consensus 29 tsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~-l~~~Llli~~G~~iR~---------~-~ 97 (395)
T COG2807 29 TSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERS-LFLALLLIAAGILIRS---------L-G 97 (395)
T ss_pred hhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHH-HHHHHHHHHHHHHHHh---------c-c
Confidence 344455666566679999999999999999999999999999999999987 5555555555433210 0 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhh
Q 014880 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 200 (416)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~ 200 (416)
+....+.. ..+.+.+.+..|+-..+++-+.. +++-+.+++.+.....+|+.+++.++.|+.++ ..
T Consensus 98 ~~~~L~~g----t~l~G~gIav~nVLLPslIK~~F--pk~~~~mtglYs~sl~~~aaLaa~lavpla~~---------~~ 162 (395)
T COG2807 98 GLPLLFLG----TLLAGAGIAVINVLLPSLIKRDF--PKRVGLMTGLYSTSLGAGAALAAALAVPLAQH---------SG 162 (395)
T ss_pred cHHHHHHH----HHHHHhhHHHHHHhhhHHHHhhc--ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHh---------hc
Confidence 11112121 13566777778887888887765 46678899999999999999999999998864 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-ccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014880 201 QYRWIAYSSIFIGCCFVGIFLSR-TEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIN 279 (416)
Q Consensus 201 ~~~~~~~~~~~i~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 279 (416)
+||.....-+..+++..+..+.- .||+ .+..+.+. .+-.+++|||.-|.+.+.+-++...+|..+.|+|.++.|
T Consensus 163 gW~~aL~~WAl~allAl~~WlPq~~r~~--~~~~~~~~---~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~ 237 (395)
T COG2807 163 GWRGALGFWALLALLALLIWLPQALREQ--AASIATKL---VSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID 237 (395)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhccccc--cccccccc---ccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 79999887777776665543322 1221 11111111 122457899988999999999999999999999999987
Q ss_pred hcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 014880 280 DLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANAL 358 (416)
Q Consensus 280 ~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 358 (416)
+ |+|..+.+.+.....+..++.+++.+.+ +|..|+ ++.......++.++...+.+.|...++.. .++.|+|.|.
T Consensus 238 ~-G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~-r~~~~~~~~~~l~G~~G~~~~P~~~~~lw---~~llG~G~G~ 312 (395)
T COG2807 238 R-GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQ-RPLVVLALLLMLVGLVGLLLAPGQLPILW---ALLLGLGQGG 312 (395)
T ss_pred c-CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHhCccch
Confidence 6 9999999988888888888888888776 333333 34445555566666666666764444333 5789999999
Q ss_pred HHHhhhhhheeeeccc-cccchhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 014880 359 MMVTGISMQNVLVGED-LSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 359 ~~~~~~~~~~~~~~~~-~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~~ 406 (416)
.++.......++.++. ..+ ..++...-...+=.++||++.+.++|+
T Consensus 313 ~F~laL~li~~rs~~a~~Aa--~LSgmaQg~GYllAa~GP~l~G~lhDa 359 (395)
T COG2807 313 AFPLALTLILLRSSDAAIAA--ALSGMAQGVGYLLAAFGPWLFGFLHDA 359 (395)
T ss_pred HHHHHHHHHHhhcCChHHHH--HHHHHhhhhhHHHHhhhhhhHhHHHHh
Confidence 9988888776655333 333 333433334444446667777777766
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-17 Score=162.84 Aligned_cols=330 Identities=14% Similarity=0.125 Sum_probs=200.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhh
Q 014880 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV 124 (416)
Q Consensus 45 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (416)
..++...+|+|-+ ....|+.....+..++..|+.|+++|.||||.. ++.+.++..++.+...+ .+..-
T Consensus 65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~-~i~g~~l~vvG~Iv~at----------A~~~~ 132 (599)
T PF06609_consen 65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYF-FIIGSLLGVVGSIVCAT----------AQNMN 132 (599)
T ss_pred HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHH-HHHHHHHHHhHHHHhhc----------CCcHH
Confidence 3455555667555 467788888999999999999999999999876 77778777777665432 11121
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHH
Q 014880 125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW 204 (416)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 204 (416)
. +..-..+.|+|.+..... ...++|+.+ .|.|.....+.. ...+.....++.+.+.+. .+.+|||
T Consensus 133 ~---~iag~~l~GvgaG~~~~~-~~~isEl~p-~k~R~~~~~~~~----~~~i~~~~~~~~ia~~~~------~~~~WRw 197 (599)
T PF06609_consen 133 T---FIAGMVLYGVGAGVQELA-ALAISELVP-NKWRGLGLAIAS----IPFIITTWISPLIAQLFA------AHSGWRW 197 (599)
T ss_pred H---HHHHHHHHHHhhHHHHHH-HHHHHHhcc-cchhhhHhHHHH----HHHHhhhcccHHHHHHhc------cCCCcch
Confidence 2 111223566666555443 344678875 455654333222 222222222333333222 2458999
Q ss_pred HHHHHHHHHHHHHHHHHhhc-cCcccc-c-cc---cC-----------------------------C-C-----------
Q 014880 205 IAYSSIFIGCCFVGIFLSRT-EEPRLK-M-GL---RG-----------------------------N-S----------- 237 (416)
Q Consensus 205 ~~~~~~~i~~~~~~~~~~~~-~e~~~~-~-~~---~~-----------------------------~-~----------- 237 (416)
.+++..++..+..+..+++. |.++.+ + ++ ++ . .
T Consensus 198 ~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~l 277 (599)
T PF06609_consen 198 IFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPL 277 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhH
Confidence 99888776555444333222 221111 0 00 00 0 0
Q ss_pred -----------------chHHHH--HHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh---hhhHHHHH
Q 014880 238 -----------------HARISW--AYWFKK-ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS---AKALVPAI 294 (416)
Q Consensus 238 -----------------~~~~~~--~~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~ 294 (416)
..++++ .+++|| |.+....++.++....++....++|......++.++. ..++....
T Consensus 278 viG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~ 357 (599)
T PF06609_consen 278 VIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSP 357 (599)
T ss_pred HHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhh
Confidence 001111 367887 4455555666666666777778888887766665542 34556666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccc
Q 014880 295 IYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGED 374 (416)
Q Consensus 295 ~~i~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 374 (416)
...+..+++.+.+.+-++.||.|..++++.+++.++.-.+.....++....+...++.|++.|..........+..+|.+
T Consensus 358 ~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~ 437 (599)
T PF06609_consen 358 VGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDE 437 (599)
T ss_pred HHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCch
Confidence 66677777777666544445667777777766655444454444455555567788999999888766666777777888
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 375 LSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 375 ~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
.-| .+.++....+.+|+.+|..+....
T Consensus 438 ~ig--~a~gL~~s~R~~GGsIg~aIy~~I 464 (599)
T PF06609_consen 438 DIG--TATGLTGSIRSIGGSIGYAIYNAI 464 (599)
T ss_pred HHH--HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 877 888999999999999997776543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.3e-21 Score=174.27 Aligned_cols=360 Identities=11% Similarity=0.023 Sum_probs=224.1
Q ss_pred CCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHH
Q 014880 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGS 97 (416)
Q Consensus 18 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~ 97 (416)
+.+.+++......+.++++...-+.+-...+---+..|+++...|++.++..+...+.+|+.|+++|||.||++ +..|.
T Consensus 27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v-~~vG~ 105 (493)
T KOG1330|consen 27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRV-IAVGI 105 (493)
T ss_pred ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceE-EeeHH
Confidence 34455556666777777777766665553333333349999999999999999999999999999999999887 77888
Q ss_pred HHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHH
Q 014880 98 VLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL 177 (416)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~ 177 (416)
.+..++.+..- ..+..|++ .+.+.+.|+|-+...+..+++++|.++ +++|++..++.+...+.|..
T Consensus 106 ~iW~~Av~~~~----------fs~~Fwq~---~l~R~~vGiGeAs~~~ia~s~IaD~f~-~~~Rs~~~~ify~~ipvGsg 171 (493)
T KOG1330|consen 106 FIWTLAVFASG----------FSNHFWQV---LLCRGFVGIGEASYSPIAPSLIADSFP-DDKRSRVLGIFYFAIPVGSG 171 (493)
T ss_pred HHHHHHHHHHH----------HHHHHHHH---HHHHHHhccchhhhcccchhHhhhcCc-chhhhHHHHHhhhhcccccc
Confidence 88877765532 12333343 344468889999999999999999986 67899999999999999988
Q ss_pred HHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccc-cc--cCC------CchHHHHHHHHh
Q 014880 178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM-GL--RGN------SHARISWAYWFK 248 (416)
Q Consensus 178 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~-~~--~~~------~~~~~~~~~l~~ 248 (416)
++...+..+..+ ...|||.+...+++++++.++.+++++||++.. ++ +++ .+..+..+.+.|
T Consensus 172 lG~vvgs~va~~---------~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~ 242 (493)
T KOG1330|consen 172 LGYVVGSVVASL---------TFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAK 242 (493)
T ss_pred eeEEeeeeeccC---------ccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHc
Confidence 766655444432 223999999999999999998888888876532 11 111 123445566777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhH--HHHHH
Q 014880 249 KILYYQVALVYMLTRLVVNVSQAYLAFYVIND---LRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLK--AYYSA 322 (416)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~--~~~~~ 322 (416)
++.+..-.+.+....+..+.+..+.|.+.... .|.+..+..++..+...++.+|...++.+ +++.++++ ....+
T Consensus 243 ~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~ 322 (493)
T KOG1330|consen 243 IKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRA 322 (493)
T ss_pred cCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhH
Confidence 77766555666666666666556666654433 33344444456666666777887777766 44444331 11222
Q ss_pred HHHH------HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH-hhhhhheeeeccccccchhhhhHHH-HHHHHHHH
Q 014880 323 GGVL------WVFCGAGILILPMNMSAFMYVLAIFVGIANALMMV-TGISMQNVLVGEDLSGCAFVCGTLS-FLDKMSCG 394 (416)
Q Consensus 323 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~G~g~~~~~~~-~~~~~g~~ 394 (416)
.... ..+.++.++...........+.+++.|........ ....+..+.++++++- ++++.-. +...+|..
T Consensus 323 ~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt--~a~a~~~~~~h~fgd~ 400 (493)
T KOG1330|consen 323 SQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRT--TAYALDTVFEHIFGDA 400 (493)
T ss_pred HHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCccccc--HHHHHHHHHHHHhccC
Confidence 2111 11111111111122333333444455554433332 3334455666777766 5666533 33333333
Q ss_pred HHHHHHhhh
Q 014880 395 IAVYVLQSY 403 (416)
Q Consensus 395 ig~~l~~~~ 403 (416)
-+|.|++.+
T Consensus 401 ~~p~ivGil 409 (493)
T KOG1330|consen 401 ASPYIVGIL 409 (493)
T ss_pred CCcceehhH
Confidence 334344444
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-18 Score=168.42 Aligned_cols=332 Identities=14% Similarity=0.065 Sum_probs=239.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhh
Q 014880 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV 124 (416)
Q Consensus 45 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (416)
.+.+.+.++.+.+..+++|+.++..-...+..|+.+.+.||+|.|++ .+.|.++..++..+... ..+.+.
T Consensus 67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v-~i~G~~v~~~g~~lssF---------~~~i~~ 136 (509)
T KOG2504|consen 67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTV-MIAGGLVAALGLLLSSF---------ATSLWQ 136 (509)
T ss_pred hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHH-HHHHHHHHHHHHHHHHH---------HhhHHH
Confidence 44555556669999999999999999999999999999999999887 77777777777554321 122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHH
Q 014880 125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW 204 (416)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 204 (416)
..+.+. .+.|+|.+....|....+..+. +++|+.++++...+..+|..+-+.+...+. +..|||+
T Consensus 137 l~lt~g---vi~G~G~~~~~~paiviv~~YF--~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~----------~~~G~r~ 201 (509)
T KOG2504|consen 137 LYLTFG---VIGGLGLGLIYLPAVVILGTYF--EKKRALATGIAVSGTGVGTVVFPPLLKYLL----------SKYGWRG 201 (509)
T ss_pred HHHHHH---HHhhccchhhhcchhhhhhhHh--HHHHHHHHhhhhccCCcceeeHHHHHHHHH----------HHhCcHH
Confidence 334443 4777888888888888888665 678999999999999998877665555554 4679999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCc---------------------------cccc----ccc------------CC--C--
Q 014880 205 IAYSSIFIGCCFVGIFLSRTEEP---------------------------RLKM----GLR------------GN--S-- 237 (416)
Q Consensus 205 ~~~~~~~i~~~~~~~~~~~~~e~---------------------------~~~~----~~~------------~~--~-- 237 (416)
.+.+.+.+.+-.........|.+ ...+ ..+ ++ .
T Consensus 202 ~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (509)
T KOG2504|consen 202 ALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNS 281 (509)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCcccccc
Confidence 99998888766666555544400 0000 000 00 0
Q ss_pred chHHHH----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHH-HH
Q 014880 238 HARISW----AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMA-WT 312 (416)
Q Consensus 238 ~~~~~~----~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~-~~ 312 (416)
..+..+ .+++||+.|+.+.+...+..+.+.....++|.|.. ..+.+..+.+.+.++.++..+++.++.|++. +.
T Consensus 282 ~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~ 360 (509)
T KOG2504|consen 282 PLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP 360 (509)
T ss_pred chhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc
Confidence 112222 57899999999898888888999999999999987 5699999999999999999999999998872 22
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHH
Q 014880 313 GQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMS 392 (416)
Q Consensus 313 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g 392 (416)
..+.+....++.+..+++.....+. ++.+.++...++.|+..|...........+..+.++-. -++|+..+.+.++
T Consensus 361 ~~~~~~~~~~~ll~~gl~~~~~p~~--~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~--~a~Gl~l~~~gi~ 436 (509)
T KOG2504|consen 361 GIRALVLFLLTLLIAGLARLFLPFA--TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLS--NAYGLLLLFQGIG 436 (509)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcc--hHHHHHHHHhHHH
Confidence 2111234444444444444333333 46777788889999999998877776777777766655 5888888888888
Q ss_pred HHHHHHHHhhhccc
Q 014880 393 CGIAVYVLQSYQSK 406 (416)
Q Consensus 393 ~~ig~~l~~~~~~~ 406 (416)
..+|+.+.+.+.+.
T Consensus 437 ~l~gpPiag~~~d~ 450 (509)
T KOG2504|consen 437 ALVGPPIAGLLYDI 450 (509)
T ss_pred HHcCcccceeeeec
Confidence 88888888876544
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7e-17 Score=155.99 Aligned_cols=353 Identities=13% Similarity=0.036 Sum_probs=211.0
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhccc-CCchhhHHhHHHHHHHHH
Q 014880 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF-GHFKIWHGAGSVLVAVSF 104 (416)
Q Consensus 27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~-Grrk~~ll~~~~~~~~~~ 104 (416)
+......+.....++....++|.|+++. |+++.+.+.+.+.+.....+..++.|+++||+ ||||. ++.+.+...++.
T Consensus 12 ~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~-iliG~il~~lg~ 90 (493)
T PRK15462 12 YYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMA-VMLGALLMAIGH 90 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH-HHHHHHHHHHHH
Confidence 3334444556778888889999999886 99999999999999999999999999999999 99998 556666666554
Q ss_pred HHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCc-cchhHHHhHHHHHHHHHHHHHHHHH
Q 014880 105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS-TSRVVLTSCRNAFTMVANLSLYAIA 183 (416)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~-~~r~~~~~~~~~~~~~g~~l~~~~~ 183 (416)
.++.. + . .......... .+..++.+.......+++.|..+++ ++|++..++.+.+.++|..+++.+.
T Consensus 91 lll~~---~----~-~~~~~~~l~l----~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~ 158 (493)
T PRK15462 91 VVLGA---S----E-IHPSFLYLSL----AIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIAC 158 (493)
T ss_pred HHHHH---h----h-cchhHHHHHH----HHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHH
Confidence 33321 0 1 1111111111 1222444444455667888887643 3688889999998999988888777
Q ss_pred HHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhcc---Cccc-cccccCCCchH-------------------
Q 014880 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE---EPRL-KMGLRGNSHAR------------------- 240 (416)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---e~~~-~~~~~~~~~~~------------------- 240 (416)
+.+. +..||++.|.+.++..++..+..+...| +... ++++.++++..
T Consensus 159 g~L~----------~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (493)
T PRK15462 159 GYAQ----------EEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALIT 228 (493)
T ss_pred HHHH----------hhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6665 3568999988765433333222222111 1100 11111000000
Q ss_pred ----HHH--------------------HHHH--hhHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--h--h
Q 014880 241 ----ISW--------------------AYWF--KKIL-YY---QVALVYMLTRLVVNVSQAYLAFYVINDLRMG--Q--S 286 (416)
Q Consensus 241 ----~~~--------------------~~l~--~~~~-~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~--~--~ 286 (416)
+.+ ++-. .+|+ .. .+.+...+.+..+....+-+..|..++.+.+ . -
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~i 308 (493)
T PRK15462 229 VLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTV 308 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceee
Confidence 000 0000 0121 11 1122233333333333444555554432211 0 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHHHhhhh-----HHHHHHHHHHHHHHHHHHhhc----CC---chhHHHHHHHHHHH
Q 014880 287 AKALVPAIIYICSFIVSILLQE-MAWTGQRL-----KAYYSAGGVLWVFCGAGILIL----PM---NMSAFMYVLAIFVG 353 (416)
Q Consensus 287 ~~~~~~~~~~i~~~~~~~l~~~-~~~~~~r~-----~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~l~g 353 (416)
-.+++.+++.+..++.+++..+ +.++.||. -.=+.++.++.+++++.+.+. .. .+.++++...++.+
T Consensus 309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t 388 (493)
T PRK15462 309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG 388 (493)
T ss_pred CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 1345666666666666665544 35553321 112566777777776555321 11 24566667778899
Q ss_pred HHHHHHHHhhhhhheeeeccccccchhhhhHHHHHH-HHHHHHHHHHHhhhc
Q 014880 354 IANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLD-KMSCGIAVYVLQSYQ 404 (416)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~-~~g~~ig~~l~~~~~ 404 (416)
+|+-+..|...++..+..|+|.+| ++.|.+.+.. .+|+.+++.+.+...
T Consensus 389 ~gEl~~sPvgls~~~~laP~~~~g--~~mg~w~l~~~~~~~~~~g~~~~~~~ 438 (493)
T PRK15462 389 FAELFIDPVAMSQITRIEIPGVTG--VLTGIYMLLSGAIANYLAGVIADQTS 438 (493)
T ss_pred HHHHHHChHHHHHHHHhChHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999 8999887744 688888888877653
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=162.31 Aligned_cols=318 Identities=12% Similarity=0.026 Sum_probs=212.6
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHH
Q 014880 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA 134 (416)
Q Consensus 55 g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (416)
+-+++++|+++....+.+.+.+|++|.+.||+|+|-| +++|..+...+.++... . .++...++.. .
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ip-m~~Gl~vmf~sTilFaf-------g--~sy~~l~vAR----~ 167 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIP-MVAGLFVMFLSTILFAF-------G--NSYPMLFVAR----S 167 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccH-HHHHHHHHHHHHHHHHH-------c--chhHHHHHHH----H
Confidence 6678899999999999999999999999999999998 66777777666554321 1 1222232332 3
Q ss_pred HHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHH
Q 014880 135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC 214 (416)
Q Consensus 135 ~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 214 (416)
+.++|.+..+++..++++|..++++||+++.|..-.+..+|.++++..++.+++. .|.+.+|.+.+++.+
T Consensus 168 LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~----------~Gk~aPFlVL~~v~L 237 (464)
T KOG3764|consen 168 LQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF----------AGKSAPFLVLAIVLL 237 (464)
T ss_pred HhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh----------cCCcCcHHHHHHHHH
Confidence 6779999999999999999999999999999999999999999988888777744 467888999988888
Q ss_pred HHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHH
Q 014880 215 CFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAI 294 (416)
Q Consensus 215 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 294 (416)
+-..+.++..+.++.++. ......++.++++++..+........++........-++.+..|....+..+.+.....
T Consensus 238 ld~~L~l~vi~p~~~~~~---~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp 314 (464)
T KOG3764|consen 238 LDGALQLLVIEPTEMDPD---STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLP 314 (464)
T ss_pred HHHHHHHheeCccccCcc---ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecc
Confidence 777776665544332221 11223456788999987777766667767777777888888888888555567766666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhH--HHHH--HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheee
Q 014880 295 IYICSFIVSILLQEMAWTGQRLK--AYYS--AGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVL 370 (416)
Q Consensus 295 ~~i~~~~~~~l~~~~~~~~~r~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 370 (416)
..+...++..+.+.+ .||+. +.+. .++.+..++.....+. ++....++.....+++.+.............
T Consensus 315 ~~~~y~ig~~lfg~l---a~k~~~~~wl~~~~gl~~~G~~~~~iP~~--~~~~~L~vp~~~l~~~i~~~dasl~P~l~~l 389 (464)
T KOG3764|consen 315 ASLSYAIGTNLFGKL---ADKYPHLRWLLSLGGLATVGVSSGPIPFA--TSIAQLWVPNFGLGFGIGLADASLIPTLGYL 389 (464)
T ss_pred cccchhccCchHHHH---HHhcCchhHHHHHHHHHHHHHHhchhHhh--hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHh
Confidence 667778888887666 44441 2222 2222222222222222 2444444555555666555544443333444
Q ss_pred ecccccc----chhhhhHHHHHHHHHHHHHHHHHhhhc
Q 014880 371 VGEDLSG----CAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (416)
Q Consensus 371 ~~~~~~G----~g~~~~~~~~~~~~g~~ig~~l~~~~~ 404 (416)
++.|+.. .|..|++...+..+|..+||.+.+...
T Consensus 390 vd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv 427 (464)
T KOG3764|consen 390 VDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLV 427 (464)
T ss_pred cchhhccccceeeeHHHHHHHHHHHhhhccccccchhe
Confidence 4433322 347777766555555555555544443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.2e-18 Score=164.07 Aligned_cols=342 Identities=12% Similarity=0.055 Sum_probs=207.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccC----CchhhHHhHHHHHH-HHHHHh
Q 014880 34 MLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFG----HFKIWHGAGSVLVA-VSFSSV 107 (416)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~G----rrk~~ll~~~~~~~-~~~~~~ 107 (416)
+...+. ......+++++++ +|+|+++++...+...+...+ .|++|.++||++ |||.+++.+.+... .....
T Consensus 36 ~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~- 112 (468)
T TIGR00788 36 FVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGL- 112 (468)
T ss_pred HHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHh-
Confidence 334455 5555566777776 599999999998888888776 788999999985 46667777766552 22211
Q ss_pred hCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhH---HHhHHHHHHHHHHHHHHHHHH
Q 014880 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVV---LTSCRNAFTMVANLSLYAIAF 184 (416)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~---~~~~~~~~~~~g~~l~~~~~~ 184 (416)
. + ...+...... ....+.+++.+..+++..++..|..+ +++.. ..+.......+|.++++.+++
T Consensus 113 l----~----~~~~~~~~~~---~~~~l~~~~~a~~dv~~da~~~e~~~--~~~~~~~~~~s~~~~~~~~G~~vg~~l~G 179 (468)
T TIGR00788 113 L----P----GKVSSAKVAA---AFIFLAALAKALYDVLVDSLYSERIR--ESPSAGPSLVSWMWGASATGGLISSLLGG 179 (468)
T ss_pred c----c----cccchHHHHH---HHHHHHHHHHHHHHHhHHHHHhhhhh--cCCCcCCCeeeHHHHHHHHHHHHHHHHHH
Confidence 1 1 1111111111 12235667788888999999999875 33332 333444444578888777777
Q ss_pred HHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccc--cccccCC----------------CchHHHHHHH
Q 014880 185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL--KMGLRGN----------------SHARISWAYW 246 (416)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~--~~~~~~~----------------~~~~~~~~~l 246 (416)
.+.. ..+|+..+.+.+++.++... .....+|+++ .++.+++ ++.....++.
T Consensus 180 ~l~~----------~~~~~~~f~~~a~l~ll~~~-~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (468)
T TIGR00788 180 PLLD----------KTLTRILFLITAALLLLQLF-VSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGA 248 (468)
T ss_pred HHHH----------hcCcchHHHHHHHHHHHHHH-HHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 6653 45789999888777766633 3455566431 1111110 0111234556
Q ss_pred HhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHH
Q 014880 247 FKKILYYQVALVYML-TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAG 323 (416)
Q Consensus 247 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~ 323 (416)
+++|..+...+..++ ....... ......+..+.+|.++.+.|.+.....++.+++..+.+++ .+|+ ++.+.++
T Consensus 249 l~~~~i~~~l~fifl~~~~~~~~-~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~---~~~~~~r~~l~~~ 324 (468)
T TIGR00788 249 IQLLEIAKPLIFIFLSYANLPGA-SGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRF---LKTFPYRLLFGVT 324 (468)
T ss_pred HhcHHHHHHHHHHHHHHhhcCCC-CceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHH---HhhCCHHHHHHHH
Confidence 777776654444444 2211111 1111113345689999999988888888888888777655 3343 4777777
Q ss_pred HHHHHHHHHHHhhcC--------CchhHHHHHHHHHHHHHHHHHHHhhhhhheeeecccccc--chhhhhHHHHHHHHHH
Q 014880 324 GVLWVFCGAGILILP--------MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSG--CAFVCGTLSFLDKMSC 393 (416)
Q Consensus 324 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G--~g~~~~~~~~~~~~g~ 393 (416)
.++.+++........ .++.+.+....++.+++.+........+..+.+|++.+| .+...++.+++..+|+
T Consensus 325 ~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~ 404 (468)
T TIGR00788 325 TLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSG 404 (468)
T ss_pred HHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHH
Confidence 766665543321110 023334455667888888887777777888888999888 2444445556666666
Q ss_pred HHHHHHHhhhccc
Q 014880 394 GIAVYVLQSYQSK 406 (416)
Q Consensus 394 ~ig~~l~~~~~~~ 406 (416)
.+|+.+.+++|.+
T Consensus 405 ~~gg~l~~~~g~~ 417 (468)
T TIGR00788 405 FLGVLLMETIGIT 417 (468)
T ss_pred HHHHHHHHHcCCC
Confidence 6666688888744
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.4e-18 Score=168.75 Aligned_cols=286 Identities=9% Similarity=0.005 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccc--
Q 014880 40 AACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL-- 117 (416)
Q Consensus 40 ~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~-- 117 (416)
.......++...++++++..+.|++.+.+.+..++..++.|++.||+||||. +..+.++++++.++... |..+.
T Consensus 49 ~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~-i~~g~ll~~lg~ll~al---phf~~~~ 124 (633)
T TIGR00805 49 NGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIV-IGIGCAIMGLGSFLLSL---PHFLSGR 124 (633)
T ss_pred HHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceE-EEecHHHHHHHHHHHhC---hHHhcCC
Confidence 3344445566666679999999999999999999999999999999999886 67777777666544422 21000
Q ss_pred ---------------------c-c----------------cch-hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCc
Q 014880 118 ---------------------S-T----------------STL-KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS 158 (416)
Q Consensus 118 ---------------------~-~----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~ 158 (416)
. . ... ...+..+.+.+.+.|+|.+...+...+++.|..+ +
T Consensus 125 y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~-~ 203 (633)
T TIGR00805 125 YSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAK-S 203 (633)
T ss_pred ccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCC-c
Confidence 0 0 000 0011223334457778887777777888888875 6
Q ss_pred cchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccc----------cCchhh--HHHHHHHHHHHHHHHHHHHHHhhccC
Q 014880 159 TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT----------HADLEN--QYRWIAYSSIFIGCCFVGIFLSRTEE 226 (416)
Q Consensus 159 ~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~----------~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~e 226 (416)
++|++..++.+....+|.++++.+++.+...+.+.. ..|..+ +|+..|++.++++++..+..+++.++
T Consensus 204 ~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 204 KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKA 283 (633)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 889999999999999999999998888876542110 011122 47888888887777766554444333
Q ss_pred ccccc--c-----cc------CC----------CchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014880 227 PRLKM--G-----LR------GN----------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRM 283 (416)
Q Consensus 227 ~~~~~--~-----~~------~~----------~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 283 (416)
.+.+. + ++ ++ ++..+.+++++|||.++...+..++.....+.+..|+|.|+++++|.
T Consensus 284 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~ 363 (633)
T TIGR00805 284 LPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGI 363 (633)
T ss_pred cCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 21110 0 00 00 01123467799999999888888888888889999999999999999
Q ss_pred chhhhhHHHHHHHH-HHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHH
Q 014880 284 GQSAKALVPAIIYI-CSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFC 330 (416)
Q Consensus 284 ~~~~~~~~~~~~~i-~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~ 330 (416)
++.+++.+.....+ +.+++.++.|++ +|+..+.++.+.++.++..++
T Consensus 364 s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~ 412 (633)
T TIGR00805 364 SSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLS 412 (633)
T ss_pred cHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHH
Confidence 99988877766554 456777777765 333323345555555444444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.76 E-value=9e-15 Score=137.65 Aligned_cols=314 Identities=9% Similarity=-0.011 Sum_probs=175.5
Q ss_pred HHHHHHHHH-hCCChHH-HHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccch
Q 014880 45 TYLLLFLTD-IGLSPRG-AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (416)
Q Consensus 45 ~~l~~~~~~-~g~s~~~-~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (416)
++..+++.+ .|+|+++ .|.+.+++...+++.+.+.|.++||+|.||. +..+.+...+...+... .+.
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~v-L~l~~l~Wsl~t~L~~f----------a~S 114 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPV-LVLQALSFVCVWLLLLL----------GTS 114 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHHHHHHH----------HHH
Confidence 444556654 5999999 9999999999999999999999999999887 55555555554433210 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHH
Q 014880 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY 202 (416)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~ 202 (416)
. ..+.+...++|++-+... ++...+..+.+ ++||++++++...+..+|.++++.++..+. ..||
T Consensus 115 l---~~L~i~R~llGvaEA~~~-A~~syI~~WfP-~kER~ratsi~~sg~~vG~~Ia~~L~qll~-----------s~gW 178 (511)
T TIGR00806 115 V---WHMQLMEVFYSVTMAARI-AYSSYIFSLVP-PSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-----------TLGW 178 (511)
T ss_pred H---HHHHHHHHHHHHHHHHHH-HHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hcCc
Confidence 2 223334457888888777 88888888875 789999999999999999999888777632 2355
Q ss_pred HHHH---HHHHHHHHHHHHHHHhhccCccc------c---------c-c---ccCC--Cc-------------hHHHHHH
Q 014880 203 RWIA---YSSIFIGCCFVGIFLSRTEEPRL------K---------M-G---LRGN--SH-------------ARISWAY 245 (416)
Q Consensus 203 ~~~~---~~~~~i~~~~~~~~~~~~~e~~~------~---------~-~---~~~~--~~-------------~~~~~~~ 245 (416)
|+.. ++......+..++.++ +|.+++ + + + +++. .. ....+++
T Consensus 179 r~y~~Ln~Isl~s~~~a~~~a~~-LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 257 (511)
T TIGR00806 179 ISYSTLNIISLVFMTFSVFLALF-LKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVT 257 (511)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh-CCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHH
Confidence 5543 3333333333333333 231111 0 0 0 0000 00 1122344
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHH
Q 014880 246 WFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL-KAYYSAGG 324 (416)
Q Consensus 246 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~-~~~~~~~~ 324 (416)
..+|+....-.+-..+...+++.+..|.-.-..+.-+..+..-|.+-.+..+.+.+.++..|.++..-+++ ...+.+..
T Consensus 258 ~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s 337 (511)
T TIGR00806 258 IYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVS 337 (511)
T ss_pred HhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Confidence 45666654444545555444544444333322222121222344455554455566667777652111332 22223333
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHH
Q 014880 325 VLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDK 390 (416)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~ 390 (416)
.+.+....++ ...++.|..++..++++..+....+....-+.....+++.| +.+|++++...
T Consensus 338 ~~~~gll~~m--~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~a--LvFGiNtfvAl 399 (511)
T TIGR00806 338 AIQAGLVFWM--SQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCA--LVFGINTFVAT 399 (511)
T ss_pred HHHHHHhhhh--hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceE--EEEecHHHHHH
Confidence 3333332222 22458888888888887776665544433333333444444 55565554433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-16 Score=139.34 Aligned_cols=322 Identities=12% Similarity=-0.006 Sum_probs=180.3
Q ss_pred CChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHH
Q 014880 56 LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAI 135 (416)
Q Consensus 56 ~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (416)
.+....|.+-+.+.+.+.+.+|.+|.++||+|||.+ ++.+.+..+++..+... +.+ ...++.-++ +
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpv-ll~c~~~va~s~ll~~~---------S~~-F~afv~aR~---l 130 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPV-LLACLIGVALSYLLWAL---------SRN-FAAFVLARF---L 130 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHH-HHHHHHHHHHHHHHHHH---------HHH-HHHHHHHHH---h
Confidence 355678999999999999999999999999999655 77777777776544221 112 223333232 2
Q ss_pred HHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHH
Q 014880 136 FNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCC 215 (416)
Q Consensus 136 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 215 (416)
.|+.- ..-....++++|+.+ +|+|++..+.......+|.++++++++.+..+... +..+-+-.+.++..+....
T Consensus 131 ~Gi~k-gnl~v~rAiisdV~s-ek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~----~g~~p~alP~~~v~i~a~~ 204 (451)
T KOG2615|consen 131 GGIFK-GNLSVIRAIISDVVS-EKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSI----SGSYPFALPCLLVFILAAG 204 (451)
T ss_pred hhhcc-CchHHHHHHHHhhcC-hhhccceeeeeehhhhcchhhcchhhhHHHhhHhh----hccCchHHHHHHHHHHHHH
Confidence 22222 222345688889886 58999999999999999999999999888762210 0122233333333333333
Q ss_pred HHHHHHhhccCcccccccc-CC-------CchH--HHH-----HHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 014880 216 FVGIFLSRTEEPRLKMGLR-GN-------SHAR--ISW-----AYWFKKILY-------YQVALVYMLTRLVVNVSQAYL 273 (416)
Q Consensus 216 ~~~~~~~~~~e~~~~~~~~-~~-------~~~~--~~~-----~~l~~~~~~-------~~~~l~~~~~~~~~~~~~~~~ 273 (416)
-.....++.||+-..++++ ++ ++.+ ... -..+||++. +.+.+.++.....+.....+.
T Consensus 205 ~v~~~~~~lpETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~ 284 (451)
T KOG2615|consen 205 DVTFFPWFLPETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTV 284 (451)
T ss_pred HHHHHHHhCCccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 2223334566642111111 00 0000 011 123445442 233445555555555554444
Q ss_pred HHHHHhhcccchhhhhHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHH
Q 014880 274 AFYVINDLRMGQSAKALVPAIIYICSFIVSILL-QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFV 352 (416)
Q Consensus 274 ~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~-~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 352 (416)
+.+-.+.+|+++.+.|.+....++.+.+..... +++.+..+..+.....++.++.-..+++... ..+..++....+.
T Consensus 285 ~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~--~~~~~l~~~s~l~ 362 (451)
T KOG2615|consen 285 LFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA--RTPVVLYLGSTLK 362 (451)
T ss_pred HHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc--ccchhhhHHHHHH
Confidence 445457789999888877766555444444332 2222211111233333333322222222233 2445566777788
Q ss_pred HHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHh
Q 014880 353 GIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (416)
Q Consensus 353 g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~ 401 (416)
.+..+...+....+.....|.+.+| ...|+......++-++||.+.+
T Consensus 363 sf~~A~~vt~Lt~Lv~~~~~~~qrG--~~~Gi~~Sl~alaRaiGPlv~g 409 (451)
T KOG2615|consen 363 SFSTASVVTCLTSLVHKYGPQSQRG--TLNGIFRSLGALARAIGPLVSG 409 (451)
T ss_pred HHHHHHhhHHHHHHHHhcCCcccch--HHHHHHHHHHHHHHHhhhhhhh
Confidence 8887777777777777667788888 5666655555555555555543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.3e-16 Score=148.65 Aligned_cols=238 Identities=14% Similarity=0.038 Sum_probs=176.7
Q ss_pred HhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHH
Q 014880 53 DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVF 132 (416)
Q Consensus 53 ~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (416)
|.++...+.+.+.+++.+.+++++++.|.+.||+.-.|.....+......+....+. ...+.++..+
T Consensus 75 dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-----------~s~~~~ialr-- 141 (495)
T KOG2533|consen 75 DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-----------HSFPGLIALR-- 141 (495)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHH--
Confidence 346777889999999999999999999999999996665333333222222222111 1122333333
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHH
Q 014880 133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFI 212 (416)
Q Consensus 133 ~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 212 (416)
.+.|+.-+...++...++..+.. ++||+...++......+|++++++++..+...-+. ....||||.|++-+++
T Consensus 142 -~llGl~es~~wP~~~~~lg~wy~-~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~----~~~~gW~~~FiI~G~i 215 (495)
T KOG2533|consen 142 -FLLGLFESGGWPGVVAILGNWYG-KSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS----GGLAGWRWLFIIEGVI 215 (495)
T ss_pred -HHHHHHhcccchHHHHHHHhhcC-hhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC----CCcCCceeehhHHHHH
Confidence 35555566666777777777764 78999999999999999999998888776653221 1367999999999999
Q ss_pred HHHHHHHHHhhccCcccc------cc--------c-cC-----CCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014880 213 GCCFVGIFLSRTEEPRLK------MG--------L-RG-----NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAY 272 (416)
Q Consensus 213 ~~~~~~~~~~~~~e~~~~------~~--------~-~~-----~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 272 (416)
.++..++.++++|+.+.+ +| + ++ ++..+..+++.+|++..|.+.++.++.....+++..|
T Consensus 216 ~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~ 295 (495)
T KOG2533|consen 216 TLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYW 295 (495)
T ss_pred HHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHH
Confidence 999998888877764431 01 0 00 1124567789999999999999999999999999999
Q ss_pred HHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 014880 273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM 309 (416)
Q Consensus 273 ~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~ 309 (416)
+|.|+.+..|.+..+...+.....++.+++.++.+.+
T Consensus 296 lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~l 332 (495)
T KOG2533|consen 296 LPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYL 332 (495)
T ss_pred HHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHH
Confidence 9999999667888888888888888899999998877
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-14 Score=142.99 Aligned_cols=336 Identities=10% Similarity=0.024 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccc
Q 014880 42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST 121 (416)
Q Consensus 42 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (416)
.+..+.+...+++|+|.++++++.+++. ...+.+++.|+++||+|||+. +..+.+...++..+... +... ....
T Consensus 45 ~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~v-llig~ll~~iG~ll~al-a~~~---~i~~ 118 (591)
T PTZ00207 45 AFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPI-FVLSMTVFCLGTLLFAL-TFQE---VIEG 118 (591)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHH-Hhcc---cccC
Confidence 3445556555556999999999998854 445778889999999999887 66666666666544432 0010 0011
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhH
Q 014880 122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 201 (416)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~ 201 (416)
..+.+..++ .+.+++.+..+++....+.++. +++|+++.++...+..+|.++.+.+...+. ..+
T Consensus 119 s~~~l~l~r---~l~G~G~~~~~~~~~~~i~~~F--p~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~-----------~~~ 182 (591)
T PTZ00207 119 SVVRLSVYN---GLMTLGCMLFDLGAVVTVLSVF--PSNRGAVVAIMKTFTGLGSAILGSIQLAFF-----------SDN 182 (591)
T ss_pred cHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHh
Confidence 233333333 3555666666666666666665 478999999999999999875433332222 124
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcccccc--ccCC-Cch---------------------------------------
Q 014880 202 YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG--LRGN-SHA--------------------------------------- 239 (416)
Q Consensus 202 ~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~--~~~~-~~~--------------------------------------- 239 (416)
|+..+++.++++++..++.+..+++++.+.. ++.+ ++.
T Consensus 183 ~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~ 262 (591)
T PTZ00207 183 TSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQ 262 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHH
Confidence 5555555555555555554444444321110 0000 000
Q ss_pred --------------------------------------------------------------------------------
Q 014880 240 -------------------------------------------------------------------------------- 239 (416)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (416)
T Consensus 263 ~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 342 (591)
T PTZ00207 263 GALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQF 342 (591)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCC
Confidence
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchhh--hhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014880 240 RISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDL-RMGQSA--KALVPAIIYICSFIVSILLQEMAWTGQRL 316 (416)
Q Consensus 240 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~i~~~~~~~l~~~~~~~~~r~ 316 (416)
.+++.+.+++..+|.+...+++..........-+.+.. +.+ |.+.+. ...+..+..+.+.+|.+..|.++.+.+|.
T Consensus 343 ~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~-~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~ 421 (591)
T PTZ00207 343 QETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIY-TALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKR 421 (591)
T ss_pred cchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHH-HHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhh
Confidence 01222333333334333333333222222111122221 222 442211 22256677888999999988876222221
Q ss_pred H------HHHHH-HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHH
Q 014880 317 K------AYYSA-GGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLD 389 (416)
Q Consensus 317 ~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~ 389 (416)
+ +++.. ...++.++.+++++.- +. ..+++..++.|+++|...+......++.++ ++-| .-|.+..++.
T Consensus 422 ~~~~r~prt~~l~~~~~~~~~~lll~~~~-p~-~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g--~~yN~~~~a~ 496 (591)
T PTZ00207 422 RAEDRVPITIALFIPSVCIITMLTLFLTL-PK-AALPLPYFIAAFANGFMAATIALVTRTIFA-KDPA--KHYNFCFLGS 496 (591)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHC-Cc-cHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchH--HHhhHHhHHH
Confidence 1 12222 2222444434443332 11 356788899999999999999999999999 7877 7888777777
Q ss_pred HHHHHHH-HHHHhhhcc
Q 014880 390 KMSCGIA-VYVLQSYQS 405 (416)
Q Consensus 390 ~~g~~ig-~~l~~~~~~ 405 (416)
-+|+.+= ..+.+.+.+
T Consensus 497 pigs~~~n~~l~G~~Yd 513 (591)
T PTZ00207 497 VLSAIFLNRLLYGEWYT 513 (591)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 7776554 555555543
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-15 Score=140.82 Aligned_cols=322 Identities=11% Similarity=-0.013 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHH
Q 014880 60 GAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVG 139 (416)
Q Consensus 60 ~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (416)
..+.+.+++.+..++++.+.|.++||+|||.. ++...+...++..+... +...+.....+.-+ .+.|+.
T Consensus 61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~-l~~~~~l~~~~~~~~~~-------s~~~~~~e~li~GR---~i~Gl~ 129 (485)
T KOG0569|consen 61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNA-LLLSNLLAVLAALLMGL-------SKSAPSFEMLILGR---LIVGLA 129 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHH---HHHHHH
Confidence 35667889999999999999999999999977 44444444444333221 11112222222222 355555
Q ss_pred HHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHH
Q 014880 140 WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGI 219 (416)
Q Consensus 140 ~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 219 (416)
.+.......-++.|.+| .+.||......+.+..+|.+++..++.+ ..++ ....|++.+....+++++....
T Consensus 130 ~gl~~~~~pmyl~E~sP-~~~RG~~g~~~~~~~~~g~ll~~~~~l~--~ilG------t~~~W~~l~~~~~i~~~~~l~~ 200 (485)
T KOG0569|consen 130 CGLSTGLVPMYLTEISP-KNLRGALGTLLQIGVVIGILLGQVLGLP--SLLG------TEDLWPYLLAFPLIPALLQLAL 200 (485)
T ss_pred hHHHHHHHHHHHhhcCh-hhhccHHHHHHHHHHHHHHHHHHHHccH--HhcC------CCcchHHHHHHHHHHHHHHHHH
Confidence 56666666677888886 5789999999999999999887655544 2333 3567999998887777666655
Q ss_pred HHhhccCccc-----cccc-------------c--C---------------CCchHHHHHHHHhhHHHHHHH----HHHH
Q 014880 220 FLSRTEEPRL-----KMGL-------------R--G---------------NSHARISWAYWFKKILYYQVA----LVYM 260 (416)
Q Consensus 220 ~~~~~~e~~~-----~~~~-------------~--~---------------~~~~~~~~~~l~~~~~~~~~~----l~~~ 260 (416)
. .+.||+++ +.++ + + +++.+.+++++++|++.+.-. ...+
T Consensus 201 l-~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~ 279 (485)
T KOG0569|consen 201 L-PFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSF 279 (485)
T ss_pred H-hcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHH
Confidence 4 45566432 0000 0 0 001223467889987765432 2223
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhc--
Q 014880 261 LTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL-- 337 (416)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~-- 337 (416)
...+.......++...+.++.|++..+..+.....++...+..+....+ ++.+|| +.++.+..++.++..++...
T Consensus 280 ~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR--pLll~~~~~~~~~~~~~~~~~~ 357 (485)
T KOG0569|consen 280 AQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR--PLLLISLSLMAVALLLMSIALF 357 (485)
T ss_pred HHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333222334566666777789998877777777777777777777664 777776 77777777766665544322
Q ss_pred -CCch-hHH---HHHHHHHHHHHHHHH-HHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 014880 338 -PMNM-SAF---MYVLAIFVGIANALM-MVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 338 -~~~~-~~~---~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~~ 406 (416)
.... .|. .++..++..+..+.. .|..+-+..|++|.+.+. .+.+.......+...+-+...-.+++.
T Consensus 358 l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~--aa~s~~~~~~w~~~fiv~~~fp~l~~~ 430 (485)
T KOG0569|consen 358 LSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARS--AAQSVATAVNWLSNFIVGFAFPPLQNV 430 (485)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 122 223333444443332 466777888999888877 566666666666666665554444433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-14 Score=131.16 Aligned_cols=267 Identities=12% Similarity=0.023 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccc------CchhhHH
Q 014880 129 YCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH------ADLENQY 202 (416)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~------~~~~~~~ 202 (416)
+.+...+.+.|.+..++..+++++++.+ +|++.+..++.+....+|.++++.+...+........+ ..+...|
T Consensus 13 ~l~~~f~~g~G~~~lq~~~n~~v~~~~~-~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~ 91 (310)
T TIGR01272 13 FLGALFVLASGLTILQVAANPYVSILGP-IETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKV 91 (310)
T ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHCC-cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHH
Confidence 3333347888899999999999999874 56788889999999999999999888777643210000 0012578
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q 014880 203 RWIAYSSIFIGCCFVG-IFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND- 280 (416)
Q Consensus 203 ~~~~~~~~~i~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~- 280 (416)
++++++.+.+..+..+ +.+...||.+++++++..++.....++.+|+|.++...+..++..........|.+.|+.+.
T Consensus 92 ~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~ 171 (310)
T TIGR01272 92 HTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSSGDTTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPH 171 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCcccccccccccccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998866555444433 33333344222211111111111224567888877766777777667888899999999754
Q ss_pred -cccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 014880 281 -LRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANAL 358 (416)
Q Consensus 281 -~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 358 (416)
+|.++++.+........+.++|+++.+++ +|+++| +.+.++..+.+++..+....+ .... .....+.|++.+.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~--~~l~~~~~l~~~~~~l~~~~~--~~~~-~~~~~l~g~~~s~ 246 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG--RYLAFNAFLAVLLSIGAALTH--GYVA-MWFVLALGLFNSI 246 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHHHcC--CHHH-HHHHHHHHHHHHH
Confidence 68888888888888888888899888766 444443 566666655555544333333 2222 2355578999999
Q ss_pred HHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 014880 359 MMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (416)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~ 405 (416)
.+|...+...+..+++ .+ ...++. ....+|+.+.|.+.+.+-+
T Consensus 247 i~P~~~s~a~~~~~~~-~~--~asai~-~~~~~Gg~i~P~l~G~lad 289 (310)
T TIGR01272 247 MFPTIFSLALNALGRH-TS--QGSGIL-CLAIVGGAIVPLLQGSLAD 289 (310)
T ss_pred HHHHHHHHHHhhhhhh-hh--hhHHHH-HHHHhcchHHHHHHHHHHH
Confidence 9999888776655543 33 333443 3455777777776666544
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-13 Score=133.66 Aligned_cols=337 Identities=16% Similarity=0.142 Sum_probs=193.6
Q ss_pred HHHHHHH-hCCChHHHHHHHHHHHHHHHhhhhhhhhhhccc---C-CchhhHHhHHHHHHHHHHHhhCCccCcccccccc
Q 014880 47 LLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRF---G-HFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST 121 (416)
Q Consensus 47 l~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~---G-rrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (416)
..+|++| +|+++++.....+...+-.. ..|+.|.++|.+ | |||++++++.++..++...+.. .|. ...+
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~--~~~---~~~s 85 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLAL--LPA---SESS 85 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHh--ccc---ccch
Confidence 3445555 59999999998888777554 599999999984 5 8889999888877655444331 231 1111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCC-ccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhh
Q 014880 122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 200 (416)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~-~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~ 200 (416)
...... +..+..+|+...++...++..|..++ +++|+...+.......+|.+++..+.+++... .
T Consensus 86 -~~~~~~---~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~----------~ 151 (433)
T PF03092_consen 86 -AAIAVV---LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS----------F 151 (433)
T ss_pred -hhhHHH---HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc----------C
Confidence 111111 12356788999999999999998753 34478888888888889998888777776633 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccccc------cC-C-------CchHHHHHHHHhhHHHHHHHH-HHHHHHHH
Q 014880 201 QYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL------RG-N-------SHARISWAYWFKKILYYQVAL-VYMLTRLV 265 (416)
Q Consensus 201 ~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~------~~-~-------~~~~~~~~~l~~~~~~~~~~l-~~~~~~~~ 265 (416)
+++..+.+.+++..+..+...+..+|++.+++. ++ . ++....+++.++.+..+...+ ..++....
T Consensus 152 ~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 231 (433)
T PF03092_consen 152 GPQGVFLISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLP 231 (433)
T ss_pred CCeEEehHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 456666666666665555555555652221110 11 0 011223445566666554444 22222111
Q ss_pred HHHHHHHHHHHHHhhcc---cchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHH-hhcC-
Q 014880 266 VNVSQAYLAFYVINDLR---MGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGI-LILP- 338 (416)
Q Consensus 266 ~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~-~~~~- 338 (416)
..........+..+..+ +++...+.+..+..++.++|..+..++ .++. |+++.+..++.++..+.- .+..
T Consensus 232 ~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~---~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~ 308 (433)
T PF03092_consen 232 PSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKY---FSNWSWRRIFVVTTLVSVLASLFDLLLVTR 308 (433)
T ss_pred cCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHhcccEEEEEE
Confidence 11100000011223345 777777777666666677776665432 2222 566666655544443221 1111
Q ss_pred ------CchhHHHHHHHHHHHHHHHHHHHhhhhhheeeecccccc--chhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 014880 339 ------MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSG--CAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 339 ------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G--~g~~~~~~~~~~~~g~~ig~~l~~~~~~~ 406 (416)
.++.+..+.-.++..+..+..+-.......+.+|++.+| .+...++.|++..++..++..+.+.++-+
T Consensus 309 ~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt 384 (433)
T PF03092_consen 309 WNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVT 384 (433)
T ss_pred EeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 112233334445555555554444555667889999998 24555556677777777777777777743
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.1e-12 Score=118.71 Aligned_cols=349 Identities=13% Similarity=0.019 Sum_probs=207.2
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHh-C----CChHHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHHhHHHHHHH
Q 014880 29 YGSGHMLNDITAACWFTYLLLFLTDI-G----LSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAV 102 (416)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~-g----~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr-~Grrk~~ll~~~~~~~~ 102 (416)
.-...+--.++++.+-..+..|++.. + ++++++-.+.+.+.-.--....+.|+++|| .|+||. +..|.+++.+
T Consensus 26 if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t-I~lGail~~i 104 (498)
T COG3104 26 IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT-IVLGAILMAI 104 (498)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHH
Confidence 33444556777777777777777664 6 999999888888888777889999999999 699998 6677777777
Q ss_pred HHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCC-ccchhHHHhHHHHHHHHHHHHHHH
Q 014880 103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYA 181 (416)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~-~~~r~~~~~~~~~~~~~g~~l~~~ 181 (416)
+-+.+.. + +........+... +..+|.+..-...++++.|..++ +.+|....+..+.+.++|+++++.
T Consensus 105 Gh~~L~~---~----~~~~~~gl~i~L~----~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~ 173 (498)
T COG3104 105 GHLVLAI---S----SVSGPGGLYIGLA----LIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPI 173 (498)
T ss_pred HHHHHhc---c----ccccccHHHHHHH----HHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHH
Confidence 7666653 1 1011122222222 34477887777888888887643 445777788888889999998877
Q ss_pred HHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhcc---Cccccccc---cCCCc-----------------
Q 014880 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE---EPRLKMGL---RGNSH----------------- 238 (416)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---e~~~~~~~---~~~~~----------------- 238 (416)
+.+.+. +..+|+..|.+.++-..+..+..+...+ +...++++ +.+..
T Consensus 174 i~~~~~----------~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (498)
T COG3104 174 ITGLLA----------INYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLT 243 (498)
T ss_pred HHHHHH----------HhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 776665 3567888888776544444443332221 11111110 00000
Q ss_pred ---hHHHH----------------HHHH------hhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----h
Q 014880 239 ---ARISW----------------AYWF------KKILYY----QVALVYMLTRLVVNVSQAYLAFYVINDLRMG----Q 285 (416)
Q Consensus 239 ---~~~~~----------------~~l~------~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~----~ 285 (416)
..+.+ .+.+ .+|+-. .+.+...+.+..+....+-+..|..+..+.+ .
T Consensus 244 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~ 323 (498)
T COG3104 244 LLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFE 323 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccccee
Confidence 00000 0011 222211 2222233333333333344444443321111 0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH-HHHHhhhh-----HHHHHHHHHHHHHHHHHHhhc-------C-CchhHHHHHHHHH
Q 014880 286 SAKALVPAIIYICSFIVSILLQE-MAWTGQRL-----KAYYSAGGVLWVFCGAGILIL-------P-MNMSAFMYVLAIF 351 (416)
Q Consensus 286 ~~~~~~~~~~~i~~~~~~~l~~~-~~~~~~r~-----~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~l 351 (416)
-...+..++..+..++.+++..+ +.++.++. +.-+.++..++..+++.+... + ..+.++++...++
T Consensus 324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l 403 (498)
T COG3104 324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL 403 (498)
T ss_pred cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence 11335666666656666655443 34433332 222445555555554443322 1 1245666777789
Q ss_pred HHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHh
Q 014880 352 VGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (416)
Q Consensus 352 ~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~ 401 (416)
.++|.-+..|...++...+.|++-.+ .+.+.+-+....|+.+++.+.+
T Consensus 404 ~s~gEL~iSpvGLs~~t~laP~~~~s--~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 404 QSFGELFISPVGLSMVTKLAPPALKS--FIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHhCHHHHHHHHHhChHHHHH--HHHHHHHHHHHHHHHhhceecc
Confidence 99999999999999998899998887 8888888888888888877776
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=126.40 Aligned_cols=337 Identities=12% Similarity=0.018 Sum_probs=181.1
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHH
Q 014880 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA 134 (416)
Q Consensus 55 g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (416)
+.++...+.+..+..+...++|.++|+++||+||||++..-..+ ++++..++.. |....+...-.+....|+ .
T Consensus 80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liI-mIi~t~~~~~---s~~~~~~~~~m~~L~~~R---~ 152 (538)
T KOG0252|consen 80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELII-MIICSALSGL---SVGTTSPLGVMMTLCFFR---F 152 (538)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHH-HHHHHHHhcc---CCCCCCCcchhhHHHHHH---H
Confidence 36778889999999999999999999999999999996544444 4444433321 211111112122233344 4
Q ss_pred HHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcccc-c----cCchhhHHHHHHHHH
Q 014880 135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK-T----HADLENQYRWIAYSS 209 (416)
Q Consensus 135 ~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~-~----~~~~~~~~~~~~~~~ 209 (416)
+.|+|.++-.+-..+..+|.+ ++++||...+...+.+..|.+.+..++..+...+... + ......-||..+.+.
T Consensus 153 ~LGiGIGGDYPlSAtI~SE~a-n~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg 231 (538)
T KOG0252|consen 153 LLGIGIGGDYPLSATIMSESA-NKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLG 231 (538)
T ss_pred HhhccccCCCcchHHHhhhhh-hhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHH
Confidence 677777665443444445544 5778888777666667777666666665555444221 1 112345699999988
Q ss_pred HHHHHHHHHHHHhhccCccccc-----c------c-cCC---------------CchHH---HHHHHHhhH---HHHHHH
Q 014880 210 IFIGCCFVGIFLSRTEEPRLKM-----G------L-RGN---------------SHARI---SWAYWFKKI---LYYQVA 256 (416)
Q Consensus 210 ~~i~~~~~~~~~~~~~e~~~~~-----~------~-~~~---------------~~~~~---~~~~l~~~~---~~~~~~ 256 (416)
.+.++....+.+. .||+++-+ + + +++ +..++ .+...+..+ .....+
T Consensus 232 ~vpa~~~ly~Rl~-M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~ 310 (538)
T KOG0252|consen 232 AVPALLVLYFRLK-MPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTA 310 (538)
T ss_pred HHHHHHHHHhhhc-CCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 8877777766543 45543211 0 0 000 00011 122222222 122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhH--------HHHHHHH-HHHHHHHHHHH-HHHHhhhhHHHHHHHHHH
Q 014880 257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKAL--------VPAIIYI-CSFIVSILLQE-MAWTGQRLKAYYSAGGVL 326 (416)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~i-~~~~~~~l~~~-~~~~~~r~~~~~~~~~~~ 326 (416)
...|+.-.+++....+....+. ..|..+..... ...+... +.+.|-++... .++++|| ..-+.+..+
T Consensus 311 ~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk--~iq~~GF~~ 387 (538)
T KOG0252|consen 311 GTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK--YIQLMGFFI 387 (538)
T ss_pred HHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH--HHHHhhHHH
Confidence 3344444444544444444443 23443322111 1111111 12223333222 2555665 566667766
Q ss_pred HHHHHHHHhhcCCc--hhHHHHH-HHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 327 WVFCGAGILILPMN--MSAFMYV-LAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 327 ~~~~~~~~~~~~~~--~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
+.+....+.....+ +..-..+ ..+..-+++-....+...+..+.+|.|.+| ..+|+.....++|..+|.......
T Consensus 388 ~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~--t~hGIsAA~GK~GAivg~~~F~~~ 465 (538)
T KOG0252|consen 388 MTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRS--TCHGISAASGKAGAIVGAFGFLYL 465 (538)
T ss_pred HHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhh--hhhhHHHHhccchHHHHHHHhhHh
Confidence 66665555443321 1111111 112222333333445555667888999999 899999999999999998777665
Q ss_pred cc
Q 014880 404 QS 405 (416)
Q Consensus 404 ~~ 405 (416)
..
T Consensus 466 t~ 467 (538)
T KOG0252|consen 466 TD 467 (538)
T ss_pred hh
Confidence 44
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-11 Score=122.81 Aligned_cols=295 Identities=13% Similarity=0.041 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHH
Q 014880 59 RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNV 138 (416)
Q Consensus 59 ~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (416)
.+.+++.+...+..++++++.|+++|++|||+. ++.+.+++.++.++... .. +.....+.. .+.|+
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~-l~~~~~~~~iG~ii~~~-------a~--~~~~l~~GR----~l~G~ 154 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKT-LLLAVVLFLIGAIIIAL-------AP--SWYQLIVGR----ILTGL 154 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHH-------hh--hHHHHHHHH----HHhcc
Confidence 456999999999999999999999999999988 55666666666555431 11 222222222 37788
Q ss_pred HHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHH
Q 014880 139 GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVG 218 (416)
Q Consensus 139 ~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 218 (416)
|.+........+++|+++ ++.|+...+..+....+|..++..++ ....+ ...+||..+.+..+.+++..+
T Consensus 155 g~G~~~~~~piy~sEiap-~~~RG~l~~~~~l~~~~Gi~~~~~~~-----~~~~~----~~~~Wr~~~~~~~i~~~~~~~ 224 (513)
T KOG0254|consen 155 GVGGASVLAPVYISEIAP-AHIRGTLVSLYQLFITIGILLGYCIN-----YGTSK----VYAGWRIPLGLALIPAVILAL 224 (513)
T ss_pred chhhhhhcchhhHhhcCC-hhhhHHHHHHHHHHHHHHHHHHHHHh-----hhhcc----CCccHHHHHHHHHHHHHHHHH
Confidence 889888888899999985 67899999999888888877763332 21110 014899988888777777776
Q ss_pred HHHhhccCccccc------cc---------c-CCCc---hHH-----------------HHHHHHhh--HH--HHHHHHH
Q 014880 219 IFLSRTEEPRLKM------GL---------R-GNSH---ARI-----------------SWAYWFKK--IL--YYQVALV 258 (416)
Q Consensus 219 ~~~~~~~e~~~~~------~~---------~-~~~~---~~~-----------------~~~~l~~~--~~--~~~~~l~ 258 (416)
. .+..||++... ++ . ++.+ +.+ .++++++. ++ .....+.
T Consensus 225 ~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~ 303 (513)
T KOG0254|consen 225 G-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQ 303 (513)
T ss_pred H-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHH
Confidence 6 66667654210 00 0 0000 000 01222221 11 1122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 014880 259 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQE-MAWTGQRLKAYYSAGGVLWVFCGAGILIL 337 (416)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 337 (416)
.+-+..+.+....|.+.++ +..|.+... .....+..+...++..+... ++|.+|| +.++.+...+.++..++...
T Consensus 304 ~fqq~tG~~~~~~Y~~~if-~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr--~lll~s~~~m~~~~~~~~~~ 379 (513)
T KOG0254|consen 304 LFQQLTGINYVFYYSTTIF-KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRR--KLLLFGAAGMSICLVILAVV 379 (513)
T ss_pred HHHHHhCCceEEeehHHHH-HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHhHHHHHHHHHHHHHH
Confidence 3333333344445555554 445655321 22222233334444444433 3677776 77777777777666554322
Q ss_pred C----C------chhHHHHHHHHHH-HHHHHHHHHhhhhhheeeeccccccchhhhhH
Q 014880 338 P----M------NMSAFMYVLAIFV-GIANALMMVTGISMQNVLVGEDLSGCAFVCGT 384 (416)
Q Consensus 338 ~----~------~~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~ 384 (416)
. . ...+..++...+. ........+.++.+..|..|.|.++ ...++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~--~~~s~ 435 (513)
T KOG0254|consen 380 GVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRS--KGASL 435 (513)
T ss_pred HHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHh--hhHHH
Confidence 1 1 1122222222222 1222223456666778888888877 44443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-11 Score=114.59 Aligned_cols=327 Identities=12% Similarity=0.056 Sum_probs=191.9
Q ss_pred HHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHH-hhCCccCccccccc-ch
Q 014880 46 YLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS-VFGGCMPCRILSTS-TL 122 (416)
Q Consensus 46 ~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~ 122 (416)
-...|.+++ | +...+-|...++.+++.......=|+.||+|-|.. .+.+...-.++..+ +.. +.| .. +.
T Consensus 66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a-~llgt~ln~iGa~Ir~is-s~p-----~v~~~ 137 (480)
T KOG2563|consen 66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTA-LLLGTVLNGIGAWIRLIS-SLP-----FVPPL 137 (480)
T ss_pred hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHH-HHHHHHHHHHHHHHhhhc-cCc-----ccccc
Confidence 344455555 6 77788899999999999999999999999999877 55555555555322 221 111 11 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh---hhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchh
Q 014880 123 KVETISYCVFAAIFNVGWAATQVA---HMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199 (416)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~---~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~ 199 (416)
.+..+.. .-|...+..++- ..+-+++.-.+++||..++.....+..+|.+++.++.+.+++.-. .++.
T Consensus 138 f~~~l~~-----~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~----~~~~ 208 (480)
T KOG2563|consen 138 FRRPLTH-----TGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSK----DSED 208 (480)
T ss_pred chhhhhH-----HhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCC----Ccch
Confidence 1111111 111111122221 223344443457899999999999999999988877766664321 1134
Q ss_pred hHHHH--HHHHHHHHHHHHHHHHHhhccCc-ccccc-ccC---CCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014880 200 NQYRW--IAYSSIFIGCCFVGIFLSRTEEP-RLKMG-LRG---NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAY 272 (416)
Q Consensus 200 ~~~~~--~~~~~~~i~~~~~~~~~~~~~e~-~~~~~-~~~---~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 272 (416)
+.|.. .+.....++.+......+..+|+ +.++. .+. +.+..++.++.++|++|..+.+++......++...+.
T Consensus 209 ~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~ 288 (480)
T KOG2563|consen 209 NSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTL 288 (480)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHH
Confidence 45544 35544444444444444444442 22221 111 2246778899999999988888877776666665444
Q ss_pred HHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc--CCchhHHHHHHHH
Q 014880 273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILIL--PMNMSAFMYVLAI 350 (416)
Q Consensus 273 ~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 350 (416)
+-.-+ ...|.++...|.......+++++++.+.|.+.++.||+|...++......++.+.+... .....++++....
T Consensus 289 l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~ 367 (480)
T KOG2563|consen 289 LNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCG 367 (480)
T ss_pred hhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHH
Confidence 43333 23466666778888877888899999988774444555665555554444442222211 1234455566667
Q ss_pred HHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHH
Q 014880 351 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMS 392 (416)
Q Consensus 351 l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g 392 (416)
+.|+......|....+..|.+-+..+| .-.|+.++..++-
T Consensus 368 ~~g~~~~~~~Pig~ElgvE~TyPv~E~--tSsGll~~~gq~f 407 (480)
T KOG2563|consen 368 LLGFFGTGYLPIGFELGVETTYPVAEG--TSSGLLNLSGQIF 407 (480)
T ss_pred HHHHhhcCCCCcceeeeeeeccccCCc--ccceeEEeehhHH
Confidence 788887777888888877776555555 3445444333333
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-11 Score=108.87 Aligned_cols=329 Identities=12% Similarity=0.020 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccC
Q 014880 35 LNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP 113 (416)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~ 113 (416)
..+.++.+....+.+-..+. |.+..+..++.........+++-.+|.++|++||||-+.+....-...+.+--.
T Consensus 88 mad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~----- 162 (528)
T KOG0253|consen 88 MADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGA----- 162 (528)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcC-----
Confidence 34566677777777777777 999999999999999999999999999999999999855443333333322211
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHhhh-hhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014880 114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAH-MSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA 192 (416)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~ 192 (416)
++ ++.++...+ .+.+.|.++ .|. .++-.+.-+ ..+|...+-.. +.+.+|.+....+...+..
T Consensus 163 ---sp--nf~~L~~f~----~l~~~g~gg--~pv~~~~yle~lp-~~~r~~~~V~~-~~waig~v~ea~law~vm~---- 225 (528)
T KOG0253|consen 163 ---SP--NFASLCVFR----ALWGFGVGG--LPVDSAIYLEFLP-SSHRWLLTVMS-FFWAIGQVFEALLAWGVMS---- 225 (528)
T ss_pred ---CC--CeehhhHHH----HHHhccCCC--ccHhHHHHHHhcc-CcCCCcchhHH-HHHHHHHHHHHHHHHHHHH----
Confidence 11 222222222 245555555 343 344444444 45566554444 8888999988888777663
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccc------cc------------------------------ccC-
Q 014880 193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK------MG------------------------------LRG- 235 (416)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~------~~------------------------------~~~- 235 (416)
..||||..+..+....+.+.++ ++++|+++- ++ +++
T Consensus 226 ------~~gwr~~l~~~~~pl~~~a~f~-~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~ 298 (528)
T KOG0253|consen 226 ------NFGWRYLLFTSSTPLMFAARFL-VWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEE 298 (528)
T ss_pred ------hhhHHHHHHHHHhHHHHHHHHH-hhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhh
Confidence 4589999887775555444444 556664210 00 000
Q ss_pred ----------CCchHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHH-----------------HHHHHHHhhcccc
Q 014880 236 ----------NSHARISWAYWFKKILYYQVALV----YMLTRLVVNVSQA-----------------YLAFYVINDLRMG 284 (416)
Q Consensus 236 ----------~~~~~~~~~~l~~~~~~~~~~l~----~~~~~~~~~~~~~-----------------~~~~~~~~~~g~~ 284 (416)
.++.+....+++. ++++...+. .+...+.+++... .+|.+.+-..+-.
T Consensus 299 ~~~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~ 377 (528)
T KOG0253|consen 299 SDLDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCP 377 (528)
T ss_pred hchhhhhhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCC
Confidence 0011111222222 222222221 2222222222111 1122221111100
Q ss_pred ---hhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHH
Q 014880 285 ---QSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMM 360 (416)
Q Consensus 285 ---~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 360 (416)
....=-. .+.....+.|.++.+.+ ++++|| +.+..+.+++.++..++......+.. .+..+..-+.....+
T Consensus 378 ~s~~~dYrdl-litslaefPGlLIt~~iverlGRK--kTMal~l~~f~iflfll~~c~~rn~~--tvllf~arafisg~f 452 (528)
T KOG0253|consen 378 LSVAKDYRDL-LITSLAEFPGLLITGVIVERLGRK--KTMALSLILFGIFLFLLTTCKTRNAY--TVLLFTARAFISGAF 452 (528)
T ss_pred ccchhHHHHH-HHHHHhhCCchhHHHHHHHHhcch--hHHHHHHHHHHHHHHHHHHhcCcchh--HHHHHHHHHHHhchh
Confidence 0111011 12234566777777664 677776 88888888888887776666533332 233444445555555
Q ss_pred HhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHH
Q 014880 361 VTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVL 400 (416)
Q Consensus 361 ~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~ 400 (416)
...+.+..+..|...++ ..-|.-+....+|+.+.|.+.
T Consensus 453 qvaYvYtPEVyPTavRa--tgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 453 QVAYVYTPEVYPTAVRA--TGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred eEEEEecCcccchhhhh--cchhhhhhHHhhhhhhhhHHH
Confidence 56777877877766655 334555667778888888776
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-11 Score=120.46 Aligned_cols=310 Identities=13% Similarity=0.037 Sum_probs=172.4
Q ss_pred hCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHH-HHHhhCCccCcccccccchhhHHHHHHHH
Q 014880 54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS-FSSVFGGCMPCRILSTSTLKVETISYCVF 132 (416)
Q Consensus 54 ~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (416)
.+.+.....+..+++.+...++..+.|.++||+|||++++ .+.++.+++ ....+ .+....+..++
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~-~~~~~~~i~~~~~a~-----------a~~~~~~~~~R-- 178 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLL-VSLLLFIIFGILTAF-----------APNYWMFLIFR-- 178 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHH-HHHHHHHHHHHHHHH-----------hCcHHHHHHHH--
Confidence 3788889999999999999999999999999999988844 444444444 33322 12233444444
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHH
Q 014880 133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFI 212 (416)
Q Consensus 133 ~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 212 (416)
.+.|++.+........+..|+.. +++|+....+ ......++.+.+...+.+. .+||+.+++..+.
T Consensus 179 -fl~G~~~~~~~~~~~~~~~E~~~-~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~------------~~Wr~~~~~~~~~ 243 (521)
T KOG0255|consen 179 -FLSGFFGSGPLTVGFGLVAEIVS-PKQRGLALTL-GGFFFVGGLMLPAGAAYIT------------RDWRWLFWIISIP 243 (521)
T ss_pred -HHHHhhccchhHHhHhhheeecC-cchhhHHHHH-HHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHH
Confidence 36677777777777888899885 7889998888 5555555555444443333 3899999998888
Q ss_pred HHHHHHHHHhhccCcccc-------cc------c----c-CCCch----H----------------HHHHHHHhhHHHHH
Q 014880 213 GCCFVGIFLSRTEEPRLK-------MG------L----R-GNSHA----R----------------ISWAYWFKKILYYQ 254 (416)
Q Consensus 213 ~~~~~~~~~~~~~e~~~~-------~~------~----~-~~~~~----~----------------~~~~~l~~~~~~~~ 254 (416)
..+..+. ++..+|.++- ++ + + .+.+. . ..+.++++.++++.
T Consensus 244 ~~~~~~~-~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~ 322 (521)
T KOG0255|consen 244 SGLFLLL-WFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRY 322 (521)
T ss_pred HHHHHHH-HHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHH
Confidence 7766655 4555554310 00 0 0 00000 0 11233444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHH
Q 014880 255 VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQE-MAWTGQRLKAYYSAGGVLWVFCGAG 333 (416)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~-~~~~~~r~~~~~~~~~~~~~~~~~~ 333 (416)
..+...+.+.... ...+--.+..+.+|.+.... ..........+....+. .++.+|| .....+..+..++.+.
T Consensus 323 ~~~~~~~~~~~~~-~~y~gl~~~~~~lg~~~~~~---~~~~~~~~~p~~~~~~~~~~~~gR~--~~~~~~~~~~~~~~~~ 396 (521)
T KOG0255|consen 323 RTLYLLFIWFVFS-LVYYGLSLNVSGLGGNIYLN---FTLSGLVELPAYFRNGLLLPEFGRR--PPLFLSLFLAGIGLLL 396 (521)
T ss_pred HHHHHHHHHHHHh-HHHHhhhhhhhhcCchHHHH---HHHHHHHHhhHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHH
Confidence 2222222221111 11122222233334333211 11111122333333322 2444444 5556666666666666
Q ss_pred HhhcCCchh-HHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHh
Q 014880 334 ILILPMNMS-AFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (416)
Q Consensus 334 ~~~~~~~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~ 401 (416)
..+.+.... +...+...+..++.+..+.....+..+..|...+. ...+..+....+|+.+++.+..
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~--~~~~~~~~~~~~~~i~ap~~~~ 463 (521)
T KOG0255|consen 397 FGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN--TAVGAISAAARLGSILAPLFPL 463 (521)
T ss_pred HHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 666653332 23333444444444444444455666777766666 6667778888888888877763
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.6e-12 Score=116.48 Aligned_cols=159 Identities=17% Similarity=0.170 Sum_probs=123.7
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcc----cCCchhhHHhHHHH
Q 014880 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIWHGAGSVL 99 (416)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr----~Grrk~~ll~~~~~ 99 (416)
++.+..+...++.++.|+....|+++|+.++|++....+.+-.++++...+.||+.|..+|| ||||||++..+...
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 66677777778899999999999999999999999999999999999999999999999996 99999999999988
Q ss_pred HHHHHHHhhCCccCc---ccccccc---hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHH
Q 014880 100 VAVSFSSVFGGCMPC---RILSTST---LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM 173 (416)
Q Consensus 100 ~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~ 173 (416)
..++..++.. .++ .+..... .......+.+-..+.++.....+.|..++..|+..+++++.+++++...+..
T Consensus 112 i~~~l~Lig~--aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 112 IAVSLFLIGY--AADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred HHHHHhhhhh--HhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHH
Confidence 8888665421 111 0111111 1123333443334677777788899999999998766655559999999999
Q ss_pred HHHHHHHHHHH
Q 014880 174 VANLSLYAIAF 184 (416)
Q Consensus 174 ~g~~l~~~~~~ 184 (416)
+|+.++..+++
T Consensus 190 vGnvLGY~~g~ 200 (498)
T KOG0637|consen 190 VGNVLGYALGS 200 (498)
T ss_pred hcceeeeeccc
Confidence 99988776664
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-10 Score=111.94 Aligned_cols=301 Identities=14% Similarity=0.080 Sum_probs=183.1
Q ss_pred HHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 014880 68 GQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAH 147 (416)
Q Consensus 68 ~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (416)
..+...+.+|..|.++||+|||.+ +........+....... ..+|.++. ..+. .++.......
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~-L~~~~~~~~l~~~~~~~-----------~~~~~~~~----~~l~-g~~~~~~s~~ 133 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVV-LLLPLFGTILPALCLLF-----------QGYWFFLL----LGLS-GGFSAIFSVG 133 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhh-HHHHHHHHHHhHHHHHH-----------HHHHHhhh----cccc-cchhhhhhhh
Confidence 357778899999999999999887 44444433333222211 01222110 0111 2333444555
Q ss_pred hhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 014880 148 MSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP 227 (416)
Q Consensus 148 ~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~ 227 (416)
.+.++|.+. .++|....++.......+..+++..+..+... .+.-..+.+..+..++........+||+
T Consensus 134 ~a~vadis~-~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~----------~~~a~~f~ia~~~~~~~~~y~~~~l~Es 202 (463)
T KOG2816|consen 134 FAYVADISS-EEERSSSIGLLSGTFGAGLVIGPALGGYLVKF----------LGIALVFLIAAASGILSLLYMLLFLPES 202 (463)
T ss_pred hhheeeccc-hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh----------cCchHHHHHHHHHHHHHHHHHhhccccc
Confidence 677888875 56888888888777777777777666665533 4556667777777777777777778886
Q ss_pred ccccccc---------C---CCchHHHHHHHHh---hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcccchhhhhHH
Q 014880 228 RLKMGLR---------G---NSHARISWAYWFK---KILYYQVALVYMLTRLVVNV-SQAYLAFYVINDLRMGQSAKALV 291 (416)
Q Consensus 228 ~~~~~~~---------~---~~~~~~~~~~l~~---~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~ 291 (416)
..+++++ . ..+..+.++...+ +|..+.+++..++....... .....+.|+...++.+..+.+.+
T Consensus 203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~ 282 (463)
T KOG2816|consen 203 LQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDL 282 (463)
T ss_pred cCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHH
Confidence 5433322 0 1111222222222 33334444433333222221 12134567777888998888877
Q ss_pred HHHHHHHHHHHHHHHH-HH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhhee
Q 014880 292 PAIIYICSFIVSILLQ-EM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNV 369 (416)
Q Consensus 292 ~~~~~i~~~~~~~l~~-~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 369 (416)
.+...+...++..+.. .+ ..+++| +.+..|+..-.+...++.+.. ..|.++...++.++. ....+...+....
T Consensus 283 ~~~~~~~~~i~~l~~~~~l~~~l~~~--~~i~lGl~~~~~~~~~~af~~--~~w~~~~~~v~~~~~-~~~~pa~~s~~s~ 357 (463)
T KOG2816|consen 283 LSLVSILGIISQLLLLPLLSSILGEK--RLISLGLLSEFLQLLLFAFAT--ETWMMFAAGVVVALA-GIVFPAIRAFASI 357 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--hHhhHHHHHHHHHHHHHHHhc--cchhhhHHHHHHHhh-cchhHHHHhHHHh
Confidence 7777777777776654 34 334454 677788777777766666654 555555544444433 3455667777777
Q ss_pred eeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 370 LVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 370 ~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
..+++.+| .++++.+..+.+.+.+++.+.+..
T Consensus 358 ~v~~~e~g--~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 358 LVSPEEQG--KVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred hccccccc--chhhHHHHHHHHhhhhhHHHHHHH
Confidence 77888888 788888899999998888877655
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.9e-10 Score=100.89 Aligned_cols=246 Identities=14% Similarity=0.045 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCccc
Q 014880 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (416)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~ 116 (416)
........+|+=..+++.|+++.+++.+...+....++..++.|.++||+||||.-++. .+...++-+.-.
T Consensus 47 ~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~-cily~~scl~k~-------- 117 (354)
T PF05631_consen 47 MAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLF-CILYSLSCLTKH-------- 117 (354)
T ss_pred HHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHh--------
Confidence 44445555665555567799999999999999999999999999999999999984443 444444432221
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhhhh-hhhhccCCCccchhHHHhHHHHHHHHH----HHHHHHHHHHHHHhcc
Q 014880 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHM-SMVNCITLNSTSRVVLTSCRNAFTMVA----NLSLYAIAFIVFSVST 191 (416)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-al~~~~~~~~~~r~~~~~~~~~~~~~g----~~l~~~~~~~l~~~~~ 191 (416)
. .+.. ..+.-++ +-|++.+....+.- -++.|.....-++............++ +++++.++-.+....+
T Consensus 118 ~--~~~~-~L~~GRv---lgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~ 191 (354)
T PF05631_consen 118 S--SNYP-VLLLGRV---LGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG 191 (354)
T ss_pred c--cccH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC
Confidence 1 1222 2222222 44455554444443 344443221112222222222111122 2333333333333221
Q ss_pred ccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccc--CCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 014880 192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 269 (416)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 269 (416)
.|-..+|.....+.++...+....-+|+..+++++ ..++.++.++.+++||+.+.+.+...+.....+.+
T Consensus 192 --------~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~F 263 (354)
T PF05631_consen 192 --------FGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLF 263 (354)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHh
Confidence 12245555554444444444333334432221111 12344566777888899877777776666666543
Q ss_pred H-HHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHH
Q 014880 270 Q-AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQE 308 (416)
Q Consensus 270 ~-~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~ 308 (416)
. .|.|..-.++ ...-.|++.....++.++|+.+..+
T Consensus 264 VflWtPaL~~~~---~~~P~GlIFssFM~a~MlGS~lf~~ 300 (354)
T PF05631_consen 264 VFLWTPALDPDD---EELPLGLIFSSFMVAMMLGSSLFSR 300 (354)
T ss_pred eeeeeceecCCC---CCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3 3444433111 1122577788788888888877654
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.2e-11 Score=114.44 Aligned_cols=187 Identities=12% Similarity=-0.026 Sum_probs=126.6
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHhCCC--------hHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHH
Q 014880 29 YGSGHMLNDITAACWFTYLLLFLTDIGLS--------PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV 100 (416)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~g~s--------~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~ 100 (416)
+....+...........+++.|.++.|.+ ..+.+.+.++..+...+.+++.|+++||+||||. +..+.+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~-l~~~~~~~ 291 (418)
T TIGR00889 213 FFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKV-MLLSLVAW 291 (418)
T ss_pred HHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHH
Confidence 33444444444445567778888876644 3677999999999999999999999999999887 55666655
Q ss_pred HHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHH-HHHHHHHHHH
Q 014880 101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSL 179 (416)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~-~~~~~g~~l~ 179 (416)
.+....... . .......+. ..+...+.+++++...+....++.+..+ +++|++..++.+ ....+|..++
T Consensus 292 ~v~~~l~~~---~---~~~~~~~~~---l~l~~~l~g~~~~~~~~~~~~~i~~~~p-~~~~g~~~g~~~~~~~~lg~~iG 361 (418)
T TIGR00889 292 ALRFGFFAY---G---DPEYFGYAL---LFLSMIVYGCAFDFFNISGSVFVEKEVP-VHIRASAQGLFTLMCNGFGSLLG 361 (418)
T ss_pred HHHHHHHHH---c---CcchhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhhHHHHH
Confidence 555433321 0 000001111 1122235666666666666777788775 688999999986 5678899999
Q ss_pred HHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 014880 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK 230 (416)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~ 230 (416)
+.+++.+....+.. ...+|+..+.+.+++.++..++.++..||+.++
T Consensus 362 p~l~G~l~~~~g~~----~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 362 YILSGVMVEKMFAY----GTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHHHHhccc----cCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 98888887654310 124799999888888887777777888876443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-10 Score=108.72 Aligned_cols=183 Identities=12% Similarity=0.034 Sum_probs=116.3
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHH
Q 014880 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (416)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~ 103 (416)
++.+...+..+.....+.....++|.|+++.|.++.+.|...++..+...++.++.|+++||+||||. +..+.....++
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~-~~~~~~l~~~~ 283 (393)
T PRK09705 205 PRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKL-LMLALVLQLVG 283 (393)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHH-HHHHHHHHHHH
Confidence 33333344434445566667788999998889999999999999999999999999999999999887 44454444444
Q ss_pred HHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHH
Q 014880 104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (416)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~ 183 (416)
..+... .| ... .. ... .+.+++.+.......+...+..+++++|++..+..+....++..+++.+.
T Consensus 284 ~~~~~~--~~-----~~~-~~--~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~ 349 (393)
T PRK09705 284 FCGFIW--LP-----LQL-PV--LWA----MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFS 349 (393)
T ss_pred HHHHHH--cc-----chH-HH--HHH----HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333211 01 111 11 111 12344444443444444455554456789999988888888888887777
Q ss_pred HHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 014880 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK 230 (416)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~ 230 (416)
+.+....+ +|...+.+..+..++.........+|++.+
T Consensus 350 G~l~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 350 GVLRSISG---------NYLMDWAFHALCVVGLMIITLRFAPARFPQ 387 (393)
T ss_pred HHHHHHhC---------CchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 77775432 255556665555555555555666775443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-16 Score=153.42 Aligned_cols=318 Identities=14% Similarity=0.063 Sum_probs=169.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHH
Q 014880 58 PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFN 137 (416)
Q Consensus 58 ~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (416)
..+.++..+...+...+++++.|.++||+|||+.++ .+..+..++.++... .+.....+.+...+ .+.|
T Consensus 45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~-~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~R---~~~G 113 (451)
T PF00083_consen 45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALI-ISALLMIIGSILIAF-------APSYNNFWMLLIGR---FLIG 113 (451)
T ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccc-ccccccccccccccc-------cccccccccccccc---cccc
Confidence 346789999999999999999999999999998844 444444444333221 11010122222222 3677
Q ss_pred HHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHH
Q 014880 138 VGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFV 217 (416)
Q Consensus 138 ~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 217 (416)
++.+...+....++.|..+ ++.|++...+.+....+|.+++..+...+. ... ..++||+.+.+..+..++..
T Consensus 114 ~~~g~~~~~~~~~~~E~~~-~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~------~~~~Wr~~~~~~~~~~l~~~ 185 (451)
T PF00083_consen 114 FGIGGAYVVSPIYISEIAP-PKHRGFLSSLFQLFWALGILLASLIGYIVS-YYS------DNWGWRILLIFGAIPSLLVL 185 (451)
T ss_pred ccccccccccccccccccc-cccccccccccccccccccccccccccccc-ccc------cccccccccccccccccccc
Confidence 7788887888888899885 678999998888888888877665543331 111 24579999888877776555
Q ss_pred HHHHhhccCcccc------ccc------c---------C----CCch------HHHHHHHHhhHHH----HHHHHHHHHH
Q 014880 218 GIFLSRTEEPRLK------MGL------R---------G----NSHA------RISWAYWFKKILY----YQVALVYMLT 262 (416)
Q Consensus 218 ~~~~~~~~e~~~~------~~~------~---------~----~~~~------~~~~~~l~~~~~~----~~~~l~~~~~ 262 (416)
+.. ...||++.- .++ + + +++. +..+++++++++. ........+.
T Consensus 186 ~~~-~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 264 (451)
T PF00083_consen 186 LLR-FFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQ 264 (451)
T ss_pred ccc-cccccccceecccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccc
Confidence 444 455664310 000 0 0 0000 1124556666441 1111122222
Q ss_pred HHHHHHHHHHHHHHHHhhcccchh-hhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHh--h-c
Q 014880 263 RLVVNVSQAYLAFYVINDLRMGQS-AKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGIL--I-L 337 (416)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~--~-~ 337 (416)
.........++..++.++.+.+.. .... ...+...++.++...+ ++++|| +.++.+..+.+++...+. . .
T Consensus 265 ~~~g~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~GRr--~~~i~~~~~~~~~~~~~~~~~~~ 339 (451)
T PF00083_consen 265 QFSGINFIFYYSPSIFENAGISNSFLATL---ILGLVNFLGTLLAIFLIDRFGRR--KLLIIGLLLMAICSLILGIIFFL 339 (451)
T ss_pred ccccccccccccccccccccccccccccc---ccccccccccccccccccccccc--ccccccccccccccccccccccc
Confidence 122222233444444555666655 1111 1122233333333233 555665 667777666665554442 1 1
Q ss_pred CCch----hHHHHHHHHHHHHHHH-HHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhh
Q 014880 338 PMNM----SAFMYVLAIFVGIANA-LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (416)
Q Consensus 338 ~~~~----~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~ 402 (416)
..+. ....+....+.....+ ...+..+.+..|..|.+.++ ...++......+++.+++.+...
T Consensus 340 ~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~--~~~~~~~~~~~i~~~i~~~~~~~ 407 (451)
T PF00083_consen 340 GVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRS--TGIGLSYAVGRIGGFIIPFLFPY 407 (451)
T ss_pred ccccccccccccceeeeeccccccccccccccccccccccccccc--ccccccccccccccccccccccc
Confidence 1111 1222222222222222 22345556777888777766 44555555566666666555433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.8e-11 Score=112.32 Aligned_cols=200 Identities=10% Similarity=0.030 Sum_probs=125.6
Q ss_pred CCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCC-chhhHH
Q 014880 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI--GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGH-FKIWHG 94 (416)
Q Consensus 18 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~--g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Gr-rk~~ll 94 (416)
.++-+|+..+.-..-++....-.+...+-.=+|++++ +.+++..|++++...++.++++|.+|..+.|.++ ||| ++
T Consensus 28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~P-li 106 (488)
T KOG2325|consen 28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKP-LI 106 (488)
T ss_pred ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccC-HH
Confidence 3455666655555555555544444444444788884 8888999999999999999999999999999886 788 77
Q ss_pred hHHHHHHHHHHHh-hCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHH
Q 014880 95 AGSVLVAVSFSSV-FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM 173 (416)
Q Consensus 95 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~ 173 (416)
.+.++.+++-++. .....| ...-.+..+.+. +.|+|.+.. ....+++++-+. .++|.|+.+....+..
T Consensus 107 ~s~ii~~~g~llY~~l~~~~-----~~~~y~mL~~R~----l~Gvg~~n~-a~lR~Y~a~~s~-~~dR~rA~a~~~~~~v 175 (488)
T KOG2325|consen 107 VSFLIAIIGNLLYLALAYVP-----NGVKYLMLVARI----LTGVGVGNF-AVLRAYIADAST-VEDRPRAFAATSGGFV 175 (488)
T ss_pred HHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHH----HcCcCcccH-HHHHHHHHhccC-ccchHHHHHHhhhHHH
Confidence 7887777775444 111111 111122223332 555554433 344666776554 6788898888888788
Q ss_pred HHHHHHHHHHHHHHHhcccccc---C-chhhHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 014880 174 VANLSLYAIAFIVFSVSTAKTH---A-DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK 230 (416)
Q Consensus 174 ~g~~l~~~~~~~l~~~~~~~~~---~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~ 230 (416)
+|.++++.+...+.+ ++..+. . ..-+.+..+.++.+++.++..++.....||.++.
T Consensus 176 lg~ilGp~~q~~f~~-Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 176 LGIILGPTIQLAFTP-LGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred HHHHHhHHHHHHHhh-hcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence 888888776644433 332211 0 1123455566666666666666666667775543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-10 Score=112.09 Aligned_cols=180 Identities=8% Similarity=-0.061 Sum_probs=102.0
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHh
Q 014880 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (416)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~ 107 (416)
..+..+...........++|.|+++. |+|+.+.++..++..+...++.++.|+++||+||||.... .......+....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~-~~~~~~~~~~~~ 341 (467)
T PRK09556 263 LCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVA-CIALALIIFTLG 341 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH-HHHHHHHHHHHH
Confidence 33333444444445567899999886 9999999999999999999999999999999999887433 222222221111
Q ss_pred hCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHH-HHHHHHHHHHHH
Q 014880 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSLYAIAFIV 186 (416)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~-g~~l~~~~~~~l 186 (416)
.. + ...+.....+... ..+...............|..+ +++|+++.++.+...++ |..+++.+.+.+
T Consensus 342 ~~---~----~~~~~~~~~~~~~----~~G~~~~~~~~~~~~~~~~~~p-~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i 409 (467)
T PRK09556 342 VY---Q----HATSEYMYLASLF----ALGFLVFGPQLLIGVAAVGFVP-KKAIGVANGIKGTFAYLFGDSFAKVGLGMI 409 (467)
T ss_pred HH---H----hcCcHHHHHHHHH----HHHHHHhhHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHhHHHHhhhHHHH
Confidence 10 0 1112111212111 2222111111122234446664 67899999998877775 556666666555
Q ss_pred HH-hcccc-ccCchhhHHHHHHHHHHHHHHHHHHHHH
Q 014880 187 FS-VSTAK-THADLENQYRWIAYSSIFIGCCFVGIFL 221 (416)
Q Consensus 187 ~~-~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 221 (416)
.. ..... .......+|+..|.+..+..++..+..+
T Consensus 410 ~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 410 ADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred hcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 53 00000 0000135688888877666655544433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.3e-11 Score=102.78 Aligned_cols=327 Identities=9% Similarity=0.027 Sum_probs=184.0
Q ss_pred hCCChHHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHH
Q 014880 54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVF 132 (416)
Q Consensus 54 ~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr-~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (416)
.+++.++.-++.++++.-..+...+.|++.|| +|-|.--++ -.++..++-+. +. . ....+..|....-+
T Consensus 74 ~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii-~~~fv~~Gqli-Fa---~---Ggi~~aFw~M~~GR-- 143 (459)
T KOG4686|consen 74 SNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTII-LCIFVFLGQLI-FA---A---GGISHAFWTMLAGR-- 143 (459)
T ss_pred cccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHH-HHHHHHHHHHH-HH---h---chHHHHHHHHHhhh--
Confidence 36777788889999999999999999999998 666543222 22222222211 11 0 11112222322222
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCc--hhhHHHHHHHH-H
Q 014880 133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD--LENQYRWIAYS-S 209 (416)
Q Consensus 133 ~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~-~ 209 (416)
.++|+|.-...++.+.+...+.. .||-+...++......+|...-..+.+++....+..-... ...|-...+.. .
T Consensus 144 -F~FGIGgESlAVaQN~yav~wFK-GKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~t 221 (459)
T KOG4686|consen 144 -FLFGIGGESLAVAQNKYAVYWFK-GKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKT 221 (459)
T ss_pred -eeeccCchhhhhhhcceeEEEec-CccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 37888777777888888777764 6788888888888888887766666666665443111000 11121111111 1
Q ss_pred HHHHHHHHHHHHhhccCccc---cccccCCCchHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 014880 210 IFIGCCFVGIFLSRTEEPRL---KMGLRGNSHARISWAYWFK-KILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQ 285 (416)
Q Consensus 210 ~~i~~~~~~~~~~~~~e~~~---~~~~~~~~~~~~~~~~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 285 (416)
....+++.... -...++.+ +.++ .+..+...+.+... .+++|.+.+...+...++.-+...-|.++++++|+|+
T Consensus 222 c~~slical~l-g~~D~rAerilh~e~-g~~Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~ 299 (459)
T KOG4686|consen 222 CKQSLICALSL-GLSDDRAERILHLEE-GFLGEEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSA 299 (459)
T ss_pred HHHHHHHHHHh-hhhhhHHHHHHhhhc-CcccCCcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCCh
Confidence 11122222211 11111111 1111 11101111111111 3557877777777777777777888899999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHH-HHHHHH-HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHh
Q 014880 286 SAKALVPAIIYICSFIVSILLQEMAWTGQRL-KAYY-SAGGVL-WVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVT 362 (416)
Q Consensus 286 ~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~-~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 362 (416)
...+.+.+.....+.+.++..|.+ .||. +++. +.+..+ ...+-..+.+.. -++ ++.+.+.|+..++.-..
T Consensus 300 ~~a~~i~s~vy~Isav~spvfg~i---~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~-lsP---y~~m~~lGLsysllAcs 372 (459)
T KOG4686|consen 300 VSAGNILSTVYGISAVLSPVFGAI---SDKYGFNLWWVASACILTLLGHSGLFFTF-LSP---YTSMTFLGLSYSLLACS 372 (459)
T ss_pred hhccchhhhhhhhhhhhhhhHHHh---HhhhcceehhHHHHHHHHHHHhhhHHhhh-ccH---HHHHHHHhhhHHHHHHH
Confidence 887766665544455555665554 4444 2322 222222 222223333222 122 35677889998888777
Q ss_pred hhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 363 GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 363 ~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
.|..+...+|++.-| .+|+.....+++|-.+.+.+++-+
T Consensus 373 lWP~va~~vpE~qLG--Taygf~qsIqNLgla~i~Iiag~i 411 (459)
T KOG4686|consen 373 LWPCVASLVPEEQLG--TAYGFIQSIQNLGLAFIPIIAGFI 411 (459)
T ss_pred HhhhhhhhCCHHHhc--chHHHHHHHHhhhhhHHhhhhhee
Confidence 888888888999988 777777767777766665555544
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-10 Score=107.52 Aligned_cols=166 Identities=16% Similarity=0.074 Sum_probs=108.8
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHh
Q 014880 28 YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (416)
Q Consensus 28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~ 107 (416)
.+....+...........+.+.|.++.|.++.+.+.+.+...+...+++++.|+++||+||||. +..+.+...++....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-~~~~~~~~~~~~~~~ 287 (377)
T TIGR00890 209 VLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKT-MSIVFGISAVGMAAM 287 (377)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHH
Confidence 3333333333444444456677777779999999999999999999999999999999999887 445555555544333
Q ss_pred hCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 014880 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (416)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~ 187 (416)
.. ............ ..+.+.+++.......++..|..+ +++|++..++.+....+|..+++.+.+.+.
T Consensus 288 ~~-------~~~~~~~~~~~~----~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 355 (377)
T TIGR00890 288 LF-------IPMLNDVLFLAT----VALVFFTWGGTISLFPSLVSDIFG-PANSAANYGFLYTAKAVAGIFGGLIASHAL 355 (377)
T ss_pred HH-------cccchhHHHHHH----HHHHHHHhccchhccHHHHHHHhh-hhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 111111111111 123444555544555667777764 678999999999999999888877776665
Q ss_pred HhccccccCchhhHHHHHHHHHHHHHHHH
Q 014880 188 SVSTAKTHADLENQYRWIAYSSIFIGCCF 216 (416)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 216 (416)
+..||++.+.+.+++.++.
T Consensus 356 ----------~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 356 ----------TEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred ----------hhhchhhHHHHHHHHHHHh
Confidence 3567888888776655543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.8e-09 Score=105.29 Aligned_cols=171 Identities=14% Similarity=0.103 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHH-HHHHHHHHhhCCccC
Q 014880 36 NDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV-LVAVSFSSVFGGCMP 113 (416)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~-~~~~~~~~~~~~~~~ 113 (416)
.+..++....++|.|+++. |.++.+.++......+...++.|+.|+++||+|||+. +..+.+ ..+.+..+...
T Consensus 262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~-~~~~~~~~~~~~~~~~~~---- 336 (490)
T PRK10642 262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPF-VILGSVALFVLAIPAFIL---- 336 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHHH----
Confidence 3445566677899999775 9999888888888888888999999999999999987 444433 22222221110
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 014880 114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193 (416)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~ 193 (416)
....+......... +.+++.+.......+..++..+ ++.|++..+..+.....++.+++.+.+.+...
T Consensus 337 ---~~~~~~~~~~~~~~----~~g~~~~~~~g~~~~~~~~~~p-~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~---- 404 (490)
T PRK10642 337 ---INSNVIGLIFAGLL----MLAVILNCFTGVMASTLPAMFP-THIRYSALAAAFNISVLVAGLTPTLAAWLVES---- 404 (490)
T ss_pred ---HhCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 01111111112111 2333333333344555666665 67899887764443444444444444444321
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccc
Q 014880 194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL 229 (416)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~ 229 (416)
..+|+.++....+.+++..+.. ++.||++.
T Consensus 405 -----~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~ 434 (490)
T PRK10642 405 -----TQNLMMPAYYLMVVAVIGLITG-VTMKETAN 434 (490)
T ss_pred -----hCCchHHHHHHHHHHHHHHHHH-HHhccccC
Confidence 1235655555545554444443 34577544
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-09 Score=101.80 Aligned_cols=161 Identities=12% Similarity=0.029 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccc
Q 014880 39 TAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (416)
Q Consensus 39 ~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~ 117 (416)
.+.....++|.|+++. |.++.+.|.+.+...+...++.++.|+++||+||||. +..+.............
T Consensus 231 ~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~-~~~~~~~~~~~~~~~~~-------- 301 (393)
T PRK15011 231 TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFL-MRVAAVAGVCFYAGMLM-------- 301 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHH--------
Confidence 3444456788888775 9999999999888778888889999999999999986 44444333333222110
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCc
Q 014880 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197 (416)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~ 197 (416)
. .+......... +.+++.+.......+...|..+ ++|++..+..+...++|..+++.+++.+.
T Consensus 302 ~-~~~~~~l~~~~----l~~~~~g~~~~~~~~~~~~~~p--~~~g~~~~~~~~~~~lg~~~g~~l~G~i~---------- 364 (393)
T PRK15011 302 A-HSPAILLGLQL----LNAIYIGILGGIGMLYFQDLMP--GQAGSATTLYTNTSRVGWIIAGSLAGIVA---------- 364 (393)
T ss_pred H-hhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCC--CCcchHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 1 11222211111 2222222222223344455553 56888989888888899998888887766
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014880 198 LENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (416)
Q Consensus 198 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~e 226 (416)
+..+|+..+.+..++.++..+..+ ..||
T Consensus 365 ~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 392 (393)
T PRK15011 365 EIWNYHAVFWFALVMIIATLFCLL-RIKD 392 (393)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHH-hhcC
Confidence 345788888877666666555443 3444
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-09 Score=103.00 Aligned_cols=155 Identities=13% Similarity=0.082 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccc
Q 014880 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (416)
Q Consensus 38 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~ 117 (416)
..+...+.++|.|.++.|.++.++|.+.+...+...+++++.|+++||+|||+. +..+.....++..... +
T Consensus 214 ~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~-l~~~~~~~~~~~~~~~----~---- 284 (381)
T PRK03633 214 IVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLV-LRVQVFVVILGSIAML----S---- 284 (381)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHH-HHHHHHHHHHHHHHHh----h----
Confidence 344555678899998889999999999999999999999999999999999886 4444444444433221 0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCc
Q 014880 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197 (416)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~ 197 (416)
... ..... .+.+.+.....+...+.+.|..+ +++++...+......++|..+++.+.+.+.+
T Consensus 285 ---~~~-~~~~~----~l~g~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~--------- 346 (381)
T PRK03633 285 ---QAA-MAPAL----FILGAAGFTLYPVAMAWACEKVE-HHELVAMNQALLLSYTVGSLLGPSFTAMLMQ--------- 346 (381)
T ss_pred ---hHH-HHHHH----HHHHHHHHhHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 001 11111 13333333344455566666553 4555666666666788888888888777663
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 014880 198 LENQYRWIAYSSIFIGCCFVGIF 220 (416)
Q Consensus 198 ~~~~~~~~~~~~~~i~~~~~~~~ 220 (416)
..++++.+.+.+.+.++..+..
T Consensus 347 -~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 347 -NYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred -HhCccHHHHHHHHHHHHHHHHH
Confidence 4567888888777776555443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-09 Score=103.75 Aligned_cols=162 Identities=12% Similarity=0.030 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccc
Q 014880 39 TAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (416)
Q Consensus 39 ~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~ 117 (416)
.......++++|+++. |.|+.+.+++.+...+...+++++.|+++||+|||+. . .+......+...... .
T Consensus 220 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~-~~~~~~~~~~~~l~~-------~ 290 (390)
T PRK03545 220 AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-L-IAIALLLVCLLLLLP-------A 290 (390)
T ss_pred HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-H-HHHHHHHHHHHHHHH-------H
Confidence 3334456778888886 9999999999999999999999999999999998754 3 333333333222110 0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCc
Q 014880 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197 (416)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~ 197 (416)
. .+.. .... ...+.+++.........+.+.+.. +++|+++.+.......+|..+++.+.+.+.
T Consensus 291 ~-~~~~-~~~~---~~~l~g~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~---------- 353 (390)
T PRK03545 291 A-NSEW-HLSV---LSIFWGIAIMCIGLAMQVKVLKLA--PDATDVAMALFSGIFNIGIGAGALLGNQVS---------- 353 (390)
T ss_pred h-chHH-HHHH---HHHHHHHHHhcchHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 1 1111 1111 122455555444444555555554 357888888888888888888887777776
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014880 198 LENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (416)
Q Consensus 198 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~e 226 (416)
+..+++..+.+.+++.++.....++..+.
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
T PRK03545 354 LHLGLSSIGYVGAALALAALVWSILIFRR 382 (390)
T ss_pred hccChhHHHHHHHHHHHHHHHHHHHHccc
Confidence 35678888888877777766666555543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-09 Score=103.59 Aligned_cols=151 Identities=11% Similarity=-0.035 Sum_probs=101.0
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHh
Q 014880 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (416)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~ 107 (416)
.....+...........+.|.|+++. |.++.+.++......+...+..++.|+++||+||||. +..+.....+....+
T Consensus 266 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~-~~~~~~~~~~~~~~~ 344 (471)
T PRK10504 266 GLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRV-LVATTLGLALVSLLF 344 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHHHH
Confidence 33334444455555556778888864 9999999999998888888889999999999999887 444444444443332
Q ss_pred hCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 014880 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (416)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~ 187 (416)
.. . ......+...... .+.+++.+....+..++..+..+ +++|+...+..+....+|..+++.+.+.+.
T Consensus 345 ~~---~---~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll 413 (471)
T PRK10504 345 ML---V---ALLGWYYLLPFVL----FLQGMVNSTRFSSMNTLTLKDLP-DNLASSGNSLLSMIMQLSMSIGVTIAGLLL 413 (471)
T ss_pred Hh---c---cccccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCC-HHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 0 1111111111111 23445566555666667766664 578999999999999999999998888887
Q ss_pred Hhcc
Q 014880 188 SVST 191 (416)
Q Consensus 188 ~~~~ 191 (416)
...+
T Consensus 414 ~~~g 417 (471)
T PRK10504 414 GLFG 417 (471)
T ss_pred HHhh
Confidence 7654
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-09 Score=101.06 Aligned_cols=158 Identities=11% Similarity=0.012 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcc
Q 014880 37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (416)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~ 115 (416)
.........++|.|+++. |.++.+.|++............++.|+++||+||||. +..+.+...+.......
T Consensus 212 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-~~~~~~~~~~~~~~~~~------ 284 (375)
T TIGR00899 212 WGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRL-MLLAALAGVAFYTGLAA------ 284 (375)
T ss_pred HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhH-HHHHHHHHHHHHHHHHH------
Confidence 333444456678888775 9999999999888877788889999999999999987 44444333333222110
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 014880 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 195 (416)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~ 195 (416)
..+ .+..... ..+.+.+.+.......+...|..+ ++|++..+..+...++|..+++.+.+.+.+
T Consensus 285 ---~~~-~~~~~~~---~~~~g~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~------- 348 (375)
T TIGR00899 285 ---DNS-LWALLML---QLLNAIFIGILAGIGMLYFQDLMP--GRAGAATTLYTNTGRVGWIIAGSVGGILAE------- 348 (375)
T ss_pred ---HHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 011 1221111 123445555544455566666653 456788888888888888888877776663
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH
Q 014880 196 ADLENQYRWIAYSSIFIGCCFVGIF 220 (416)
Q Consensus 196 ~~~~~~~~~~~~~~~~i~~~~~~~~ 220 (416)
..+|+..+.+.+++.++..+..
T Consensus 349 ---~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 349 ---RWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred ---hccchhHHHHHHHHHHHHHHHH
Confidence 4467888887766665555443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.4e-09 Score=105.07 Aligned_cols=266 Identities=11% Similarity=0.060 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHH----hCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCc
Q 014880 39 TAACWFTYLLLFLTD----IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC 114 (416)
Q Consensus 39 ~~~~~~~~l~~~~~~----~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~ 114 (416)
.+.+...|++.-.++ .+++..+.|++.+.+-+...+...+..+..-|. +|..|+-.|.++++++.++... |.
T Consensus 108 ~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgsll~al---PH 183 (735)
T KOG3626|consen 108 AQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGSLLFAL---PH 183 (735)
T ss_pred HHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHHHHHhC---hH
Confidence 334444555544443 389999999999999999999999999999995 4444688888888777655432 42
Q ss_pred ----------------cccc--------------------------ccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014880 115 ----------------RILS--------------------------TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVN 152 (416)
Q Consensus 115 ----------------~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 152 (416)
.-.+ .......++.+.+...+.|+|.+...+...+++-
T Consensus 184 f~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiD 263 (735)
T KOG3626|consen 184 FFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYID 263 (735)
T ss_pred HhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcccc
Confidence 0000 0111112333443344566666555555556665
Q ss_pred ccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcccc-c------cCchhh--HHHHHHHHHHHHHHHHHHHHHhh
Q 014880 153 CITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK-T------HADLEN--QYRWIAYSSIFIGCCFVGIFLSR 223 (416)
Q Consensus 153 ~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~-~------~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~ 223 (416)
|-.. +++-....++......+|.+++.+++..+..++.+. . ..|..| .|+.-|++.+.+.++..+..+++
T Consensus 264 Dnvk-~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~f 342 (735)
T KOG3626|consen 264 DNVK-KKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFF 342 (735)
T ss_pred cccc-ccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5542 455677888999999999999999998888876543 1 112222 46666888888888888877777
Q ss_pred ccCccccc------------ccc----CC-------CchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014880 224 TEEPRLKM------------GLR----GN-------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND 280 (416)
Q Consensus 224 ~~e~~~~~------------~~~----~~-------~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 280 (416)
.||.+... +++ ++ ++.....+++++|+.+....+...+......+..+|+|.|++++
T Consensus 343 Pk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Q 422 (735)
T KOG3626|consen 343 PKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQ 422 (735)
T ss_pred cccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHH
Confidence 66543211 000 00 12345568899999998888889999899999999999999999
Q ss_pred cccchhhhhHHHHHHHHH-HHHHHHHHHHH
Q 014880 281 LRMGQSAKALVPAIIYIC-SFIVSILLQEM 309 (416)
Q Consensus 281 ~g~~~~~~~~~~~~~~i~-~~~~~~l~~~~ 309 (416)
+|.+.+.+..+....++. ..+|.+++|.+
T Consensus 423 fg~sas~An~l~G~i~vp~~~~Gi~lGG~i 452 (735)
T KOG3626|consen 423 FGISASLANILTGSIGVPAAAVGIFLGGLI 452 (735)
T ss_pred cCCCHHHHHHHhhhhhhhhhhhhhhcccee
Confidence 999998777666554443 44555666664
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-09 Score=101.09 Aligned_cols=163 Identities=7% Similarity=-0.010 Sum_probs=99.6
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHH
Q 014880 28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (416)
Q Consensus 28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~ 106 (416)
...+..+...........++|.|+++. |+|+.+.+.+.+...+...++.++.|+++||+||||.... ......+....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~-~~~~~~~~~~~ 287 (394)
T PRK03699 209 FLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTV-LAGLALVLMYL 287 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHH-HHHHHHHHHHH
Confidence 334444444445556678899999876 9999999999999999999999999999999999987443 33333333222
Q ss_pred hhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHH
Q 014880 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (416)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l 186 (416)
... .+ +..+..... ...+.+.+.......+...+.. ++++++..+.......+|..+++.+.+.+
T Consensus 288 ~~~-------~~--~~~~~~~~~----~~~G~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~i~p~~~G~l 352 (394)
T PRK03699 288 FVN-------TD--DPSHLLYAI----LGLGFFSSAIYTTIITLGSQQT--KVASPKLVNFILTCGTIGTMLTFVVTSPI 352 (394)
T ss_pred HHH-------cC--CchHHHHHH----HHHHHHHHHHHHHHHHHHHHHc--cCCCHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 211 11 111111111 1344444333333344445443 23455666777777778888887777776
Q ss_pred HHhccccccCchhhHHHHHHHHHHHHHHHH
Q 014880 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCF 216 (416)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 216 (416)
.+ ..|++..++..+++.++.
T Consensus 353 ~~----------~~g~~~~~~~~~~~~~~~ 372 (394)
T PRK03699 353 VA----------HFGLQAALLTANGLYAVV 372 (394)
T ss_pred HH----------HhCchhhhhhhHHHHHHH
Confidence 64 345666666555444444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-09 Score=102.25 Aligned_cols=161 Identities=16% Similarity=0.069 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcc
Q 014880 36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (416)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~ 115 (416)
....+.....+++.|+.+.|.+ ..++......+...++.++.|++.||+||||. +..+.....++......
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-~~~~~~~~~~~~~~~~~------ 298 (399)
T PRK05122 228 ASIGFGTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRV-AIVSLLVEILGLLLLWL------ 298 (399)
T ss_pred HHHHHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHH------
Confidence 3445556667888888877664 44566677778888899999999999999886 55555544444433221
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 014880 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 195 (416)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~ 195 (416)
..+...... ...+.+++.+...+...+...+.. ++++|++..+..+....+|..+++.+.+.+.
T Consensus 299 ---~~~~~~~~~----~~~l~G~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~-------- 362 (399)
T PRK05122 299 ---APSPWMALI----GAALTGFGFSLVFPALGVEAVKRV-PPQNRGAALGAYSVFLDLSLGITGPLAGLVA-------- 362 (399)
T ss_pred ---hccHHHHHH----HHHHHHHhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 011121111 123556666655555455555655 4678999999988888888877766665555
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 014880 196 ADLENQYRWIAYSSIFIGCCFVGIFLSR 223 (416)
Q Consensus 196 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 223 (416)
+..+|++.+.+.+.+.++..+..++.
T Consensus 363 --~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 363 --SWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred --HHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 24578888888777666665554443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-09 Score=100.29 Aligned_cols=183 Identities=12% Similarity=-0.012 Sum_probs=116.1
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHH
Q 014880 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (416)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~ 101 (416)
.++.|.+++-=+...-.+..+..++|.|+++. |.++.++|.....+.+..++..|..|+++||+|.+|..+..-....+
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~ 296 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMAL 296 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHH
Confidence 44555555444444455566678999999987 99999999999999999999999999999999999985555444444
Q ss_pred HHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHH
Q 014880 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (416)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~ 181 (416)
......+. +.......+.......+. ...+..+..+.....+++.+. +++-+...++....+.+|....+.
T Consensus 297 ~~~~l~~~---~~~~~~~~~~~~~~~~~l----~l~~~~G~GnGsvfk~Ip~if--~~~~G~v~G~vga~G~lGGf~lp~ 367 (417)
T COG2223 297 AAALLSLF---LTGFGHGGSFVVFVAVFL----ALFVFAGLGNGSVFKMIPVIF--PKETGAVTGIVGAIGGLGGFFLPL 367 (417)
T ss_pred HHHHHHcc---ccccccCcchHHHHHHHH----HHHHHhccCcchheeechHHH--HhhhhHHHHHHHHhccccccchhH
Confidence 44433331 100000011222222232 334445555566667777765 456778888888878777665544
Q ss_pred HHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 014880 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSR 223 (416)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 223 (416)
..+..... .-.++..|.+...+.+++..+.+..
T Consensus 368 ~~g~~~~~---------tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 368 AFGVSLDL---------TGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHHHHHHh---------cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443322 1137777777777777776655543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.3e-09 Score=97.91 Aligned_cols=177 Identities=16% Similarity=0.105 Sum_probs=118.3
Q ss_pred CCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHH
Q 014880 21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (416)
Q Consensus 21 ~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~ 99 (416)
++.++.+..-.-.+.........++|+.++++|. |+|+..+++++.++.+...+++.+.|+++|| +.||. +......
T Consensus 208 l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~-l~~~~~l 285 (394)
T COG2814 208 LRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRA-LIAALLL 285 (394)
T ss_pred hcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhH-HHHHHHH
Confidence 4444444444444555666778889999999998 9999999999999999999999999999999 77776 4444444
Q ss_pred HHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHH
Q 014880 100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 179 (416)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~ 179 (416)
..+....+.. .+ .+.+ ...... .+++............-.++. .+|.++...++.....++|..++
T Consensus 286 ~a~~~l~l~~-------~~-~~~~-~~~~~~---~~wg~a~~~~~~~~~~~~a~~--~p~~~~~a~sl~~aa~nlgia~G 351 (394)
T COG2814 286 LALALLALTF-------TG-ASPA-LALALL---FLWGFAFSPALQGLQTRLARL--APDAADLAGSLNVAAFNLGIALG 351 (394)
T ss_pred HHHHHHHHHH-------hc-chHH-HHHHHH---HHHHHHhhhhhhHHHHHhccc--CCCchHHHHHHHHHHHHHHHHHH
Confidence 4444333221 11 1112 212222 134444444434444444442 25778899999999999999999
Q ss_pred HHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 014880 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSR 223 (416)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 223 (416)
..+++.+.. +.|+....+..+++.++...+.+..
T Consensus 352 A~lGG~v~~----------~~g~~~~~~~~a~l~~~a~~~~~~~ 385 (394)
T COG2814 352 AALGGLVLD----------ALGYAATGWVGAALLLLALLLALLS 385 (394)
T ss_pred HHHHHHHHH----------hhchHHHHHHHHHHHHHHHHHHHHH
Confidence 999988884 4677777777776666666555443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-09 Score=103.10 Aligned_cols=176 Identities=10% Similarity=-0.010 Sum_probs=106.5
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhccc--CCchhhHHhHHHHHHHHHH
Q 014880 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLVAVSFS 105 (416)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~--Grrk~~ll~~~~~~~~~~~ 105 (416)
..+..+.....+..+..++|.|+++. |.++.+.+...+...+...++.++.|+++||+ ++|+.......+.......
T Consensus 248 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~ 327 (434)
T PRK11663 248 LSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVG 327 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHH
Confidence 33334444455556667889999775 99999999999999999999999999999998 3334322221111111111
Q ss_pred HhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHH
Q 014880 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185 (416)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~ 185 (416)
.... .+ ..+.......+. ..+.+.............|.. ++++|++..++.+....+|..+++.+.+.
T Consensus 328 ~~~~--~~-----~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~p~~~g~ 395 (434)
T PRK11663 328 SLWL--MP-----FASYVMQAACFF----TIGFFVFGPQMLIGMAAAECS-HKEAAGAATGFVGLFAYLGAALSGYPLAK 395 (434)
T ss_pred HHHH--cc-----cccHHHHHHHHH----HHHHHHhhHHHHHHHHHHhcc-cHhhHHhHHHHHHHHHHHHHHHhcccHHH
Confidence 1110 01 111121111111 122111111111223345554 46789999999999999999888777766
Q ss_pred HHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014880 186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (416)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e 226 (416)
+.. ..||+..+...+++.++..+..++..|+
T Consensus 396 l~~----------~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 426 (434)
T PRK11663 396 VLE----------IWHWTGFFVVISIAAGISALLLLPFLNA 426 (434)
T ss_pred HHH----------hcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 663 4578888888888777766655555554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-09 Score=102.50 Aligned_cols=165 Identities=13% Similarity=0.033 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCccc
Q 014880 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (416)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~ 116 (416)
.........++|.|+++.|.++.+.+.+.....+...++.++.|+++||+||||. +....+...++...+..
T Consensus 233 ~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-~~~~~~~~~~~~~~~~~------- 304 (406)
T PRK11551 233 LIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRV-VLLIYAGILASLAALAA------- 304 (406)
T ss_pred HHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHh-------
Confidence 3344455667889998889999999999999999999999999999999999887 33333333333322221
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 014880 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 196 (416)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~ 196 (416)
. .+.....+ ...+.+++.+.......++..+..+ +++|++..++.+....+|..+++.+.+.+...
T Consensus 305 ~--~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~------- 370 (406)
T PRK11551 305 A--PSFAGMLL----AGFAAGLFVVGGQSVLYALAPLFYP-TQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL------- 370 (406)
T ss_pred c--CcHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHcc-hhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc-------
Confidence 1 11111111 1124455555555666677777775 67899999999998999988888777766532
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014880 197 DLENQYRWIAYSSIFIGCCFVGIFLSRTE 225 (416)
Q Consensus 197 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 225 (416)
..+|...+.......++..+..++..+
T Consensus 371 --~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 371 --GRSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 224555555554444444444444433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.9e-09 Score=103.18 Aligned_cols=173 Identities=9% Similarity=-0.061 Sum_probs=100.1
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhccc--CCchhhHHhHHHHHHHH
Q 014880 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLVAVS 103 (416)
Q Consensus 27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~--Grrk~~ll~~~~~~~~~ 103 (416)
+.+.+..+...........++|.|+++. |.+..+++....+..+...++.++.|+++||+ |||+...........++
T Consensus 256 ~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~ 335 (452)
T PRK11273 256 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 335 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 3344444444555566678999999986 99999999999999999999999999999998 45443222222222222
Q ss_pred HHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHH-HHHH
Q 014880 104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS-LYAI 182 (416)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l-~~~~ 182 (416)
...... ....+........ ...+...........+...|..+ +++|++..++.+....+|..+ ++.+
T Consensus 336 ~~~~~~-------~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~~g~~v 403 (452)
T PRK11273 336 TIVYWL-------NPAGNPTVDMACM----IVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAASAI 403 (452)
T ss_pred HHHHHH-------hcccChHHHHHHH----HHHHHHHHhHHHHHHHHHHHHcC-hhhhhhHHHHHHHHHHHHHHHhhhhh
Confidence 222111 0111111111111 12222111111122234456554 678999999988777776543 4555
Q ss_pred HHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHH
Q 014880 183 AFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL 221 (416)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 221 (416)
.+.+. +..||+..|.+.++..++..+...
T Consensus 404 ~g~l~----------~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 404 VGYTV----------DFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHH----------HHhcchHHHHHHHHHHHHHHHHHH
Confidence 55555 355788888877766655554443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.9e-09 Score=100.30 Aligned_cols=170 Identities=13% Similarity=0.086 Sum_probs=107.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhC
Q 014880 30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (416)
Q Consensus 30 ~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~ 109 (416)
.+..+...........+.|.|.++.|.++.+.+.+.....+...++.++.|+++||+||||+....+.+...++...+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~ 307 (402)
T TIGR00897 228 GMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYY 307 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 33344444555566678999988789999999999999999999999999999999999887432222222222111110
Q ss_pred CccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 014880 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (416)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~ 189 (416)
.|. ....+........ .+.+++.+.. .+..+...+.. +++|++..++.+....+|..+++.+.+.+.+
T Consensus 308 --~~~--~~~~~~~~~~~~~----~~~G~~~~~~-~~~~~~~~~~~--~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~- 375 (402)
T TIGR00897 308 --IPQ--HFGHSFAVALIIA----IALGIFLAGY-VPLAAVFPTLA--PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIG- 375 (402)
T ss_pred --HHH--ccCCcHHHHHHHH----HHHHHHHHHH-HHHHHHHHhhC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 010 0011112121222 2344444433 33445555543 4689999999999999999888888777763
Q ss_pred ccccccCchhhHHHHHHHHHHHHHHHHHHHH
Q 014880 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIF 220 (416)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 220 (416)
..||+..+++.+++.++..+..
T Consensus 376 ---------~~g~~~~~~~~a~~~~i~~~~~ 397 (402)
T TIGR00897 376 ---------FFGAIGVVWIFAALYVVSAFLT 397 (402)
T ss_pred ---------hcchHHHHHHHHHHHHHHHHHH
Confidence 4567888887776665555444
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4e-09 Score=99.71 Aligned_cols=156 Identities=14% Similarity=0.087 Sum_probs=100.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHH
Q 014880 245 YWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSA 322 (416)
Q Consensus 245 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~ 322 (416)
+++.++....+.+..++...+...+.+++--++ |+.+..+...|.+..+.-.+-++.-++.++ +-+|+ .+++.+
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~k---lI~kiGHv~v~~l 441 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFK---LIEKIGHVNVMYL 441 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHH---HHHHhcccceeee
Confidence 567776644444444444444445555554444 455655555554444444444444444443 34444 266777
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeecccccc--chhhhhH-HHHHHHHHHHHHHHH
Q 014880 323 GGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSG--CAFVCGT-LSFLDKMSCGIAVYV 399 (416)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G--~g~~~~~-~~~~~~~g~~ig~~l 399 (416)
++...+.-+..+..+. |+|.++..-++.|...+..+....++++...|++.+. +|...+. ..++..+|+.||+.+
T Consensus 442 gLa~~~~Rf~~~S~L~--n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~ 519 (618)
T KOG3762|consen 442 GLACNVGRFLYYSYLQ--NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFV 519 (618)
T ss_pred hhhHHHHHHHHHHHhc--CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhh
Confidence 7666666655555554 8888888889999999999999999999888887766 2333332 346778999999999
Q ss_pred Hhhhccc
Q 014880 400 LQSYQSK 406 (416)
Q Consensus 400 ~~~~~~~ 406 (416)
+.+++..
T Consensus 520 v~~fg~~ 526 (618)
T KOG3762|consen 520 VERFGAR 526 (618)
T ss_pred heeehhH
Confidence 9998865
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.6e-09 Score=99.57 Aligned_cols=160 Identities=17% Similarity=0.054 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCccc
Q 014880 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (416)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~ 116 (416)
.........+.+.|+++.|.++ .+.......+...+++++.|++.||+||||. +..+.....++......
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-~~~~~~~~~~~~~~~~~------- 298 (392)
T PRK12382 229 GVGFAVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV-AIVSLLVETVGLLLLWL------- 298 (392)
T ss_pred HHHHhHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCee-hHHHHHHHHHHHHHHHH-------
Confidence 3444556677888888877664 4555666777788899999999999999887 55555555555433321
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 014880 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 196 (416)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~ 196 (416)
. .+....... ..+.+++.+...+...+...+.. ++++|++..+..+....+|..+++.+.+.+.
T Consensus 299 ~--~~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~--------- 362 (392)
T PRK12382 299 A--PTAWVALAG----AALTGAGCSLIFPALGVEVVKRV-PSQVRGTALGGYAAFQDIAYGVSGPLAGMLA--------- 362 (392)
T ss_pred c--ccHHHHHHH----HHHHHHHHHhHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 1 111212121 12455666655555556666665 3688999999999988999888887776666
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhh
Q 014880 197 DLENQYRWIAYSSIFIGCCFVGIFLSR 223 (416)
Q Consensus 197 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ 223 (416)
+..||+..+.+.+++.++..+..++.
T Consensus 363 -~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 363 -TSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred -HHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 34678888888877776666555443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-09 Score=104.65 Aligned_cols=164 Identities=9% Similarity=-0.085 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHh----CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccC
Q 014880 38 ITAACWFTYLLLFLTDI----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP 113 (416)
Q Consensus 38 ~~~~~~~~~l~~~~~~~----g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~ 113 (416)
..+......+|.|+.+. +.+..+.|.+.++..+...+++++.|+++||+||||. +..+.....+...+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-~~~~~~l~~~~~~l~~~---- 311 (420)
T PRK09528 237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNA-LLLAGTIMAVRIIGSGF---- 311 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh-hHHHHHHHHHHHHHHHh----
Confidence 33334444566666553 5677889999999999999999999999999999997 44444444444333321
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhH-HHHHHHHHHHHHHHHHHHHHHhccc
Q 014880 114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC-RNAFTMVANLSLYAIAFIVFSVSTA 192 (416)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~-~~~~~~~g~~l~~~~~~~l~~~~~~ 192 (416)
. .+.+..... ..+.+++.+.........+.+..+ ++.|++..+. .+....+|.++++.+.+.+.
T Consensus 312 ---~--~~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~----- 376 (420)
T PRK09528 312 ---A--TGPLEVSIL----KLLHAFEVPFLLVGVFKYITLNFD-VRLSATIYLVGFQFAKQLGAVFLSTLAGNLY----- 376 (420)
T ss_pred ---c--ccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcC-ccceeeeeeehHHHHHHHHHHHHHHHHHHHH-----
Confidence 1 122222221 224445555554555566666654 4556655433 34556677777766666655
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014880 193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (416)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e 226 (416)
+..||+..+.+.+++.++..++.++..++
T Consensus 377 -----~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 377 -----DSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred -----HhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34578999888877777666665555554
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=87.86 Aligned_cols=135 Identities=16% Similarity=0.033 Sum_probs=90.5
Q ss_pred HHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 014880 67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVA 146 (416)
Q Consensus 67 ~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (416)
...+...+.+|+.|++.||+||||.+ ..+.....++...... . .+....... ..+.+++.+.....
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~-~~~~~~~~~~~~~~~~-------~--~~~~~~~~~----~~~~g~~~~~~~~~ 71 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVL-LVGLFIFVLSTAMFAL-------S--SNITVLIIA----RFLQGFGAAFALVA 71 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHH-HHHHHHHHHHHHHHHH-------h--ccHHHHHHH----HHHHHHHHHHHHHh
Confidence 44566778899999999999999984 4444444444333221 0 112222222 23566666666677
Q ss_pred hhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014880 147 HMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (416)
Q Consensus 147 ~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e 226 (416)
..+...|..+ +++|++..+..+....+|..+++.+.+.+. +..+|++.+.+.+.+.++..+..++..||
T Consensus 72 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 72 GAALIADIYP-PEERGVALGLMSAGIALGPLLGPPLGGVLA----------QFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHHHCC-hhhhhHHHHHHHHhHHHHHHHhHHhHHHHh----------cccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 7778888774 678999999999999999888877776655 24578888888777776666665555554
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-09 Score=102.66 Aligned_cols=146 Identities=16% Similarity=0.031 Sum_probs=95.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCC
Q 014880 32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG 110 (416)
Q Consensus 32 g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~ 110 (416)
..+...........++|.|+++. |.++.+.+.......+...+.+++.|+++||+||||..+..+.+....+......
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~- 305 (394)
T TIGR00883 227 LVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA- 305 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-
Confidence 33444555566677899999765 9999999999999999999999999999999999987554444333333211110
Q ss_pred ccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHH-HHHHHHHHHHHHHHHHHHHH
Q 014880 111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVFS 188 (416)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~-~~~~~~g~~l~~~~~~~l~~ 188 (416)
.....+ .+..... ..+.+.+.+....+..++++|..+ +++|++..+.. .....+|..+++.+.+.+..
T Consensus 306 -----~~~~~~-~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~ 374 (394)
T TIGR00883 306 -----LLDSGS-FTLFFFL---VLGLALIGGMYTGPMGSFLPELFP-TEVRYTGASLAYNLAGAIFGGFAPYIAAALVA 374 (394)
T ss_pred -----HhcCCc-hHHHHHH---HHHHHHHHHHHhhhHHHHHHHhCC-ccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence 001111 1121111 124555566666777888888876 56788887763 44455666677777666664
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.2e-09 Score=97.86 Aligned_cols=178 Identities=10% Similarity=0.006 Sum_probs=113.3
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcc-c-CCchhhHHhHHHH
Q 014880 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-F-GHFKIWHGAGSVL 99 (416)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr-~-Grrk~~ll~~~~~ 99 (416)
.+..|..++.++..-+.-+.+.-+.|.|+.|. |.|...+++..+.+-++...+.++.|++||| + |||.|.-++..+.
T Consensus 251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~ 330 (448)
T COG2271 251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL 330 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 34446777777777777778888999999998 9999999999999999999999999999999 3 8998855555555
Q ss_pred HHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHH-HHHH
Q 014880 100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLS 178 (416)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~-g~~l 178 (416)
..++....+. .+..++....+....+.. .-++.. .-......|..+ ++--|.++|+...+..+ |...
T Consensus 331 i~~~~~~~w~-------~~~~~~~l~~~~l~~iGf---~IyGPq-mLiGl~a~e~~p-K~AaGtA~Gf~Glf~Yl~Ga~~ 398 (448)
T COG2271 331 ITASLVLYWL-------APNGSYLLDAILLFIIGF---LIYGPQ-MLIGLAAAEFVP-KKAAGTATGFVGLFAYLIGAAL 398 (448)
T ss_pred HHHHHHHHHc-------CCCccHHHHHHHHHHHHH---HHhhHH-HHHHHHHhcccc-HhhccchhchhhhHHHHhhHHh
Confidence 5555544442 222333333222221111 112221 111222345543 55678888988888887 5555
Q ss_pred HHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 014880 179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLS 222 (416)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 222 (416)
+. ...++.. +.+||...|.+..+.++++.++...
T Consensus 399 a~----~~~g~i~------d~~gW~g~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 399 AG----LPLGYIA------DTWGWDGGFIVLSIAALLAILLLLP 432 (448)
T ss_pred cC----CcceeeE------ecCCCcchHHHHHHHHHHHHHHHHH
Confidence 43 3333322 2368888887776666555554443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.8e-09 Score=100.06 Aligned_cols=175 Identities=10% Similarity=-0.008 Sum_probs=110.3
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHH
Q 014880 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (416)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~ 102 (416)
++.+.+....+...........++|.|+++. |.++.+.+++.....+...++.++.|+++||+|||+..+.........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 294 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAII 294 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Confidence 3444555556666667777778899999886 999999999999999999999999999999999986222211111111
Q ss_pred H----HHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHH
Q 014880 103 S----FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 178 (416)
Q Consensus 103 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l 178 (416)
+ ...... ....+..+...... ..+.......+...++..|..+ +++|++..++.+....+|..+
T Consensus 295 ~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~~ 362 (399)
T TIGR00893 295 AGLVLSLLMFA-------TNYVNIPYAALALV----ALGFFGLGAGAIGWALISDNAP-GNIAGLTGGLINSLGNLGGIV 362 (399)
T ss_pred HHHHHHHHHHH-------hccchhHHHHHHHH----HHHHhchhhhhHHHHHHHhhcC-hhHHHHHHHHHHHHHHHhhhh
Confidence 1 111110 01111111111111 1221122245566677788774 678999999999989999888
Q ss_pred HHHHHHHHHHhccccccCchhhH-HHHHHHHHHHHHHHHHHHH
Q 014880 179 LYAIAFIVFSVSTAKTHADLENQ-YRWIAYSSIFIGCCFVGIF 220 (416)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~ 220 (416)
++.+.+.+.. ..+ |++.+.+.+++.++..+..
T Consensus 363 ~~~i~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 363 GPIVIGAIAA----------TTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred hhHHhhhhcc----------CCCchhHHHHHHHHHHHHHHHHH
Confidence 7777666552 334 7777777766655554443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.5e-09 Score=96.69 Aligned_cols=164 Identities=16% Similarity=0.170 Sum_probs=118.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCch-hhHHhHHHHHHHHHHHhhC
Q 014880 32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFK-IWHGAGSVLVAVSFSSVFG 109 (416)
Q Consensus 32 g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk-~~ll~~~~~~~~~~~~~~~ 109 (416)
..+...........+.+.+.++. |.++.+.+.......+...++.++.|+++||+|||+ . +..+.....++......
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~ 261 (352)
T cd06174 183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLL-LLIGLLLAALGLLLLAL 261 (352)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHH
Confidence 33444445555667788888887 999999999999999999999999999999999988 6 55555555555433321
Q ss_pred CccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 014880 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (416)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~ 189 (416)
. .+....... ..+.+.+.+...+...+...|..+ +++|++..+..+....+|..+++.+.+.+.+
T Consensus 262 -------~--~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~- 326 (352)
T cd06174 262 -------A--PSLALLLVA----LLLLGFGLGFAFPALLTLASELAP-PEARGTASGLFNTFGSLGGALGPLLAGLLLD- 326 (352)
T ss_pred -------h--ccHHHHHHH----HHHHHHHHhccchhHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 1 111222222 235667777777778888888875 5889999999999999999888877766652
Q ss_pred ccccccCchhhHHHHHHHHHHHHHHHHHHHH
Q 014880 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIF 220 (416)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 220 (416)
..+|++.+.+.+++.++..+..
T Consensus 327 ---------~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 327 ---------TGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred ---------ccCcchHHHHHHHHHHHHHHHh
Confidence 4578888888877776665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-08 Score=97.55 Aligned_cols=163 Identities=9% Similarity=-0.082 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccc
Q 014880 41 ACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST 119 (416)
Q Consensus 41 ~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (416)
.....++|.|.++. |.++.+.|++.+...+...++.++.|++.||.+++|. +..+.+...++...... .
T Consensus 240 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~-l~~~~~~~~~~~~~~~~-------~-- 309 (417)
T PRK10489 240 SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLL-MLLSTLGSFLAVGLFGL-------M-- 309 (417)
T ss_pred HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchH-HHHHHHHHHHHHHHHHc-------c--
Confidence 34456788999994 9999999999999999999999999999999777665 44554444444433221 1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchh
Q 014880 120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199 (416)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~ 199 (416)
.+.....+. ..+++.+.+...+...+++.+..+ ++.|++..++......+|..+++.+.+.+.. .
T Consensus 310 ~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~----------~ 374 (417)
T PRK10489 310 PMWILAVLC----LALFGYLSAISSLLQYTLLQTQTP-DEMLGRINGLWTAQNVTGDAIGAALLGGLGA----------M 374 (417)
T ss_pred chHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH----------H
Confidence 111111111 124555555555555666677664 6779999999999889999988888877774 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 014880 200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (416)
Q Consensus 200 ~~~~~~~~~~~~i~~~~~~~~~~~~~e~~ 228 (416)
.+++..+.+.+.+.++...+....++|.+
T Consensus 375 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 375 MTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred hchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 45666666666665555555555555533
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.6e-11 Score=118.40 Aligned_cols=259 Identities=11% Similarity=0.092 Sum_probs=1.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccc------
Q 014880 46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST------ 119 (416)
Q Consensus 46 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~------ 119 (416)
.++...++.+++.++.|++.+.+-+...+..++..++.+| |+|..|+-.|.++++++.++.. .|..+.+.
T Consensus 25 ~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~---lPhf~~~~y~~~~~ 100 (539)
T PF03137_consen 25 SLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFA---LPHFLSGPYSYEEA 100 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHh---ccHhhcCCCccccc
Confidence 3444444559999999999999999999999999999998 4556678888888887765543 35411110
Q ss_pred ----------------------------------cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHH
Q 014880 120 ----------------------------------STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLT 165 (416)
Q Consensus 120 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~ 165 (416)
.........+.+.+.+.|+|.+...+-..+++-|-.+ +++-+...
T Consensus 101 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~-~~~splYi 179 (539)
T PF03137_consen 101 SNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVS-KKNSPLYI 179 (539)
T ss_dssp ---------------------------------------------------SSS--------------------------
T ss_pred cccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccc-cccCccch
Confidence 0001112233333345555555555555566665442 45566778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccccC----------chhh--HHHHHHHHHHHHHHHHHHHHHhhccCcccc---
Q 014880 166 SCRNAFTMVANLSLYAIAFIVFSVSTAKTHA----------DLEN--QYRWIAYSSIFIGCCFVGIFLSRTEEPRLK--- 230 (416)
Q Consensus 166 ~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~----------~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~--- 230 (416)
++.++...+|.+++.++++.....+.+.... |..| .|..-|++.+.+.++..+....+.|+-+..
T Consensus 180 Gi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~ 259 (539)
T PF03137_consen 180 GILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSER 259 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccc
Confidence 8888888899988888888777654322110 1111 355557777776666666655544332111
Q ss_pred ---------cccc--------CC---------CchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014880 231 ---------MGLR--------GN---------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMG 284 (416)
Q Consensus 231 ---------~~~~--------~~---------~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ 284 (416)
++++ ++ ++....++++++|+.+....+...+......++.+|.|.|++.+++.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~s 339 (539)
T PF03137_consen 260 QEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLS 339 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0000 00 112234567899999888888888888888899999999999999999
Q ss_pred hhhhhHHHHHHHH-HHHHHHHHHHHH
Q 014880 285 QSAKALVPAIIYI-CSFIVSILLQEM 309 (416)
Q Consensus 285 ~~~~~~~~~~~~i-~~~~~~~l~~~~ 309 (416)
++.+..+.....+ +..+|.+++|.+
T Consensus 340 as~A~~l~G~v~ip~~~~G~llGG~i 365 (539)
T PF03137_consen 340 ASQASLLTGIVSIPGAALGILLGGYI 365 (539)
T ss_dssp --------------------------
T ss_pred HHHHHHHHhhhhcchhheehheEEEE
Confidence 8877655544433 445666666654
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-08 Score=96.45 Aligned_cols=152 Identities=12% Similarity=0.168 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCccccccc
Q 014880 42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (416)
Q Consensus 42 ~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (416)
....++++|+++. |.++.+.+...+...+...++.++.|+++||+||||. +..+....+++...+.. ...
T Consensus 217 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~-~~~~~~~~~i~~~~~~~-------~~~- 287 (382)
T PRK10091 217 AWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI-AAVTDFIIVLALLMLFF-------FGG- 287 (382)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH-HHHHHHHHHHHHHHHHH-------HHh-
Confidence 3445677788775 9999999999999999999999999999999999887 44444444444333211 011
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhh
Q 014880 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 200 (416)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~ 200 (416)
......... .+.+.+......+......+...+++.++.. ..+....+|..+++.+++.+... ..
T Consensus 288 ~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~---------~~ 352 (382)
T PRK10091 288 MKTASLIFA----FICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTL---------GL 352 (382)
T ss_pred hHHHHHHHH----HHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHc---------cc
Confidence 111111111 1233333333333333233322223334433 23455678888877777766632 24
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014880 201 QYRWIAYSSIFIGCCFV 217 (416)
Q Consensus 201 ~~~~~~~~~~~i~~~~~ 217 (416)
+|++.+...+++..+..
T Consensus 353 ~~~~~~~~~~~~~~~~~ 369 (382)
T PRK10091 353 AYNYVALPAALLSFAAM 369 (382)
T ss_pred CcchHHHHHHHHHHHHH
Confidence 56766666554444333
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-08 Score=95.93 Aligned_cols=166 Identities=11% Similarity=0.033 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCh---HHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCc
Q 014880 36 NDITAACWFTYLLLFLTDI-GLSP---RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (416)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~-g~s~---~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~ 111 (416)
.........++++.|..+. +... ...+.+..+..+...+..++.|+++||+||||. +..+.....+.......
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~-~~~~~~~~~~~~~~~~~-- 307 (408)
T PRK09874 231 IQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKI-LITALIFSVLLLIPMSF-- 307 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh-HHHHHHHHHHHHHHHHH--
Confidence 3344445566778888876 3222 235666667777888899999999999999887 44444443333322211
Q ss_pred cCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014880 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191 (416)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~ 191 (416)
. .+.+...+ . ..+.+++.+...+...+.+.+.. ++++|++..+..+....+|..+++.+++.+.
T Consensus 308 -----~--~~~~~~~~-~---~~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~---- 371 (408)
T PRK09874 308 -----V--QTPLQLGI-L---RFLLGAADGALLPAVQTLLVYNS-SNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS---- 371 (408)
T ss_pred -----h--ccHHHHHH-H---HHHHHhhhHhhHHHHHHHHHHhC-CcccceeeehHHHHHHHHHHHhhHHHHHHHH----
Confidence 0 11121111 1 12455666666666666666555 3577899989888888899988888777665
Q ss_pred ccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014880 192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (416)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e 226 (416)
+..+|++.+.+.+++.++..+..++..++
T Consensus 372 ------~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 372 ------ANYGFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred ------hhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24578999998888777776666554443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.4e-09 Score=101.51 Aligned_cols=168 Identities=15% Similarity=-0.030 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCccccccc--
Q 014880 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS-- 120 (416)
Q Consensus 43 ~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-- 120 (416)
...+.|.+.++.|.+..+.++......+...++.++.|+++||+|||+. +..+.....++...+.....+ .....
T Consensus 303 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 379 (481)
T TIGR00879 303 IMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPL-LLIGAAGMAICLFVLGILGAS--FVTGSSK 379 (481)
T ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHhhc--ccCCccc
Confidence 3455666667779999889999999999999999999999999999987 444444444443332200000 00100
Q ss_pred -chhhHHHHHHHHHHHHHHHHHHHH-hhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCch
Q 014880 121 -TLKVETISYCVFAAIFNVGWAATQ-VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL 198 (416)
Q Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~ 198 (416)
.......... ++..+++... ....++..|..+ +++|++..+......++|.++++.+.+.+..
T Consensus 380 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~---------- 444 (481)
T TIGR00879 380 SSGNVAIVFIL----LFIAFFAMGWGPVPWVIVSEIFP-LSLRPKGISIAVAANWLANFIVGFLFPTMLE---------- 444 (481)
T ss_pred chhHHHHHHHH----HHHHHHHccccCeehhhhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 0111111111 2222233222 223445566654 6789999999999999998887777666552
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 014880 199 ENQYRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (416)
Q Consensus 199 ~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~ 228 (416)
..+|++.+.+.+++.++..+...+..||++
T Consensus 445 ~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 445 SIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred hcCccceehhHHHHHHHHHHHHheecccCC
Confidence 356888888877777777666666666643
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.7e-06 Score=77.24 Aligned_cols=321 Identities=12% Similarity=0.014 Sum_probs=168.8
Q ss_pred HHHHHHHHHh--CCChHHHHHHH-HHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHH-hhCCccCccccccc
Q 014880 45 TYLLLFLTDI--GLSPRGAAAVM-LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS-VFGGCMPCRILSTS 120 (416)
Q Consensus 45 ~~l~~~~~~~--g~s~~~~g~~~-~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~-~~~~~~~~~~~~~~ 120 (416)
+|+.+|+++. |+++.|+.-=+ =+..-.+.....+...+.|..|.| |.++.+.+..+....+ ++.+
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Yk-pviil~~~~~i~t~~lll~~~---------- 92 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYK-PVIILQALSYIITWLLLLFGT---------- 92 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHC----------
Confidence 6788889874 89988875432 233334556677899999999775 5466666655555433 3321
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhh
Q 014880 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 200 (416)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~ 200 (416)
+.... -+....+|+.. +.++++.+.+=... |+++-.+++++..+...+|..++..++-.++..- ..
T Consensus 93 sv~~m----q~~q~~yg~~~-a~evay~sYiys~v-~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~--------~~ 158 (412)
T PF01770_consen 93 SVLAM----QLMQFFYGLAT-AAEVAYYSYIYSVV-DKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFG--------GV 158 (412)
T ss_pred cHHHH----HHHHHHHHHHH-HHHHHHHHHheeec-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CC
Confidence 11111 11112344333 34566666665544 3556667788888888888888887776666431 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcc------cc-----------c---c--ccC----------CCc-------hHH
Q 014880 201 QYRWIAYSSIFIGCCFVGIFLSRTEEPR------LK-----------M---G--LRG----------NSH-------ARI 241 (416)
Q Consensus 201 ~~~~~~~~~~~i~~~~~~~~~~~~~e~~------~~-----------~---~--~~~----------~~~-------~~~ 241 (416)
.++....+......+..++.++..+.++ .+ + + +++ +.. ..+
T Consensus 159 sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 238 (412)
T PF01770_consen 159 SYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWK 238 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHH
Confidence 4555544443323333333222211100 00 0 0 000 000 112
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 014880 242 SWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDL---RMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKA 318 (416)
Q Consensus 242 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~~~ 318 (416)
.+++..+|+..+.-.+...+...++.....|.-.- .++. +-.....|.+-.+..+.+.++++..|.++...+++..
T Consensus 239 ~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~L-W~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~ 317 (412)
T PF01770_consen 239 DFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSL-WDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGE 317 (412)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHH
Confidence 23444566665554555555545555444443333 3333 2222234555555555566666676665322233322
Q ss_pred -HHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHH
Q 014880 319 -YYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGI 395 (416)
Q Consensus 319 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~i 395 (416)
.+.....+.+.+..++.+ .++.|..++..++.+.......+....-+.....+++.| ..+|++++...+-+.+
T Consensus 318 l~l~~~S~l~a~~L~lm~~--t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~ya--LVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 318 LALGVFSLLQAGLLFLMSF--TGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYA--LVFGINTFVALVLQTI 391 (412)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccee--eeeeeHHHHHHHHHHh
Confidence 222222333333333333 358888888888887777666555544444455677777 8899888766554443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.2e-08 Score=94.28 Aligned_cols=170 Identities=13% Similarity=-0.000 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcc
Q 014880 37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (416)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~ 115 (416)
....+....+.|.|.++. |.++.....+..+..+...++.|+.|+++||+||||. ++.+.+...++....+. .
T Consensus 263 ~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~-~~~~~~~~~~~~~~~~~---~-- 336 (438)
T PRK09952 263 LLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRV-YITGALIGTLSAFPFFM---A-- 336 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHHHHHHH---H--
Confidence 444555667888888775 9998877666666677778889999999999999987 44444433333222110 0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHH-HHHHHHHHHHHHHHHHHHhccccc
Q 014880 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYAIAFIVFSVSTAKT 194 (416)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~-~~~~g~~l~~~~~~~l~~~~~~~~ 194 (416)
....+......... .+.+++.+.......++.+|..+ .+.|+...++.+. +..+|+.+++.+.+.+....
T Consensus 337 -~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~e~~p-~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~---- 407 (438)
T PRK09952 337 -LEAQSIFWIVFFSI---MLANIAHDMVVCVQQPMFTEMFG-ASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF---- 407 (438)
T ss_pred -HHcCChHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCC-cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 00111111111111 23345555555666788888875 4678777776543 33456666666665555321
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014880 195 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (416)
Q Consensus 195 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e 226 (416)
..+|+..+....+++++..+.. +..+|
T Consensus 408 ----~~~~~~~~~~~~~~~~i~~v~~-~~~~~ 434 (438)
T PRK09952 408 ----GGSWHSVAIYLLAGCLISAMTA-LLMKD 434 (438)
T ss_pred ----CCCchHHHHHHHHHHHHHHHHH-HHccc
Confidence 1246777666656555554443 33455
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.3e-05 Score=73.05 Aligned_cols=348 Identities=13% Similarity=0.072 Sum_probs=169.1
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHh---HHHHHHHH
Q 014880 28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGA---GSVLVAVS 103 (416)
Q Consensus 28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~---~~~~~~~~ 103 (416)
..-.+|+.+....=++-...+.|+.+. .-+-...+.--.+-.+...++.|..|.+.||..|.|..-.. --...+++
T Consensus 6 ~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s 85 (432)
T PF06963_consen 6 RLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAAS 85 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHH
Confidence 345566777776667777788888886 33444444444555667778999999999999887763211 11111111
Q ss_pred ---HHHhhCCccCcccccccchhhHHHHHHH---HHHHHHHHHHHHHhhh-hhhhhccC-CCccchhHHHhHHHHHHHHH
Q 014880 104 ---FSSVFGGCMPCRILSTSTLKVETISYCV---FAAIFNVGWAATQVAH-MSMVNCIT-LNSTSRVVLTSCRNAFTMVA 175 (416)
Q Consensus 104 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~al~~~~~-~~~~~r~~~~~~~~~~~~~g 175 (416)
+..++. .+. ....+.+.....+.+ +..+-..+..+..+.. .-.+..+. .++++..+.++...-...+.
T Consensus 86 ~~~~~~l~~--~~~--~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~c 161 (432)
T PF06963_consen 86 CALFLLLLS--YPS--SSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFC 161 (432)
T ss_pred HHHHHHHHh--CCc--cccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHH
Confidence 111121 110 000011212122221 1111112222222211 11122222 23556677888888888888
Q ss_pred HHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHh-------hccC---ccccccc--c-CC------
Q 014880 176 NLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLS-------RTEE---PRLKMGL--R-GN------ 236 (416)
Q Consensus 176 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~e---~~~~~~~--~-~~------ 236 (416)
.+++|.+.+.+.... +.+....+.++..++...+=++ ..|+ ++.++++ + +.
T Consensus 162 kllaPl~vG~l~t~~----------s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~ 231 (432)
T PF06963_consen 162 KLLAPLFVGLLMTFA----------SPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSES 231 (432)
T ss_pred HHHHHHHHHHHhhcc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccc
Confidence 999888887777543 3344444444444444333221 1121 1111000 0 00
Q ss_pred ---Cch----HHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHH
Q 014880 237 ---SHA----RIS-------WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIV 302 (416)
Q Consensus 237 ---~~~----~~~-------~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~ 302 (416)
.+. .+. |+.-+|.+.+.. .+...+.++..-++......|+..+ |+++...+.+-....+.++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vfla-s~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~g 309 (432)
T PF06963_consen 232 SSDPSILKRLWNPLRTIIRGWRTYFRQPVFLA-SFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLG 309 (432)
T ss_pred cchhhHHHHHHHHHHHHhccHHHHHhCHHHHH-HHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence 000 111 222233333221 1221111121222345556777776 999998888888888888888
Q ss_pred HHHHHHH-HHHhhhhHHHHHHHHHHH----HHHHHHHhhcCCch-----hHHHHHHHHHHHHHHHHHHHhhhhhheeeec
Q 014880 303 SILLQEM-AWTGQRLKAYYSAGGVLW----VFCGAGILILPMNM-----SAFMYVLAIFVGIANALMMVTGISMQNVLVG 372 (416)
Q Consensus 303 ~~l~~~~-~~~~~r~~~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 372 (416)
.+..+++ ++++-. |.-.++...- ..+ +...+.+..+ ...++...++.=+|.=.+-.....+.++.+|
T Consensus 310 T~~~p~l~~riGlv--r~G~~~l~~q~~~L~~~-v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~ 386 (432)
T PF06963_consen 310 TWVYPWLMKRIGLV--RAGLWSLWWQWVCLALC-VVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVP 386 (432)
T ss_pred HHHHHHHHHHhcch--hhHHHHHHHHHHHHHHH-HHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCC
Confidence 8888776 344432 3333333322 222 2223333221 1222223333334544444455556788889
Q ss_pred cccccchhhhhHHHHHHHHHHHHH
Q 014880 373 EDLSGCAFVCGTLSFLDKMSCGIA 396 (416)
Q Consensus 373 ~~~~G~g~~~~~~~~~~~~g~~ig 396 (416)
++++| ..+|+=+..+++.-.+.
T Consensus 387 ~~~Rg--~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 387 ESERG--AVSGVQNSLQSLFELLS 408 (432)
T ss_pred HHHhh--HHHHHHHHHHHHHHHHH
Confidence 99999 66666555555554443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.7e-09 Score=101.52 Aligned_cols=167 Identities=13% Similarity=0.015 Sum_probs=103.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhh
Q 014880 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV 124 (416)
Q Consensus 45 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (416)
.+.|.+.++.|.+....++......+...++.++.|+++||+|||+. ++.+.+..+++...+.. .. .......+
T Consensus 292 ~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~-~i~~~~~~~v~~~~l~~--~~---~~~~~~~~ 365 (479)
T PRK10077 292 YYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL-QIIGALGMAIGMFSLGT--AF---YTQAPGIV 365 (479)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH-HHHhHHHHHHHHHHHHH--HH---hcCcccHH
Confidence 34566666668888777777777888888999999999999999887 55555555555433321 00 00111111
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHH--HhccccccCchhhH
Q 014880 125 ETISYCVFAAIFNVGWAATQ-VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF--SVSTAKTHADLENQ 201 (416)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~-~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~--~~~~~~~~~~~~~~ 201 (416)
... .. ..++.+.+... +...++++|..+ +++|++..++......+|.++++.+.+.+. .+.. +..+
T Consensus 366 ~~~-~~---~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~------~~~~ 434 (479)
T PRK10077 366 ALL-SM---LFYVAAFAMSWGPVCWVLLSEIFP-NAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLV------AHFH 434 (479)
T ss_pred HHH-HH---HHHHHHHhccccchhHHHhHhhCC-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchh------hhcc
Confidence 111 11 12333333221 334577788764 678999999999999999888776654443 1111 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcc
Q 014880 202 YRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (416)
Q Consensus 202 ~~~~~~~~~~i~~~~~~~~~~~~~e~~ 228 (416)
|++.+.+.+++.++..++.++..||++
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 435 NGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred CccHHHHHHHHHHHHHHHHHhccccCC
Confidence 777788777776666666666666643
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-07 Score=89.73 Aligned_cols=168 Identities=14% Similarity=0.108 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHH-HHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCc
Q 014880 34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVM-LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (416)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~-~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~ 111 (416)
+...........+.++|+.+. |.++.++|.+. ....+...++.++.|+++||+||||..++.+ +...+.......
T Consensus 232 ~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~-~l~~l~~l~~~~-- 308 (491)
T PRK11010 232 VLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFG-ILQGVSNAGYWL-- 308 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHH--
Confidence 333444444556677787664 99999999997 4666788899999999999999988744333 322222211110
Q ss_pred cCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014880 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191 (416)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~ 191 (416)
.. ....+......... +.++..+....+..++..+..+ ++.+++..+..+....+|..+++.+.+.+.
T Consensus 309 l~---~~~~~~~~l~~~~~----l~~~~~g~~~~~~~a~~~~l~~-~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~---- 376 (491)
T PRK11010 309 LS---ITDKNLYSMGAAVF----FENLCGGMGTAAFVALLMTLCN-KSFSATQFALLSALSAVGRVYVGPVAGWFV---- 376 (491)
T ss_pred HH---hccccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 00 00111111111111 2222223233334455555554 455677777777777777776665555555
Q ss_pred ccccCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 014880 192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLS 222 (416)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 222 (416)
+..||+..|.+.++++++..+...+
T Consensus 377 ------~~~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 377 ------EAHGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred ------HHhChHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888777777666555543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-08 Score=99.99 Aligned_cols=145 Identities=10% Similarity=0.005 Sum_probs=91.7
Q ss_pred HHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccc
Q 014880 43 WFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST 121 (416)
Q Consensus 43 ~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (416)
...++|.|+++ .|.++.+++++.+...+...++.++.|+++||+||||.+ +.+.....+....... ... .
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~~~-------~~~-~ 364 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAY-VCSLLISQLLIIPVFA-------IGG-A 364 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHhh-------ccc-c
Confidence 34678999975 599999999999999999999999999999999999874 4443333333222211 011 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhH
Q 014880 122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 201 (416)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~ 201 (416)
..+......+ ..+...........+++.+..+ +++|++..++.+....+|..+++.+.+.+.. ..+
T Consensus 365 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~----------~~g 430 (496)
T PRK03893 365 NVWVLGLLLF---FQQMLGQGISGLLPKLIGGYFD-TEQRAAGLGFTYNVGALGGALAPILGALIAQ----------RLD 430 (496)
T ss_pred HHHHHHHHHH---HHHHHhcccchhhHHHHHhhCC-HHHhhcccchhhhhhhHHHHHHHHHHHHHhc----------cCC
Confidence 1111111111 1111111222334456666664 6789999999888888888888777766653 445
Q ss_pred HHHHHHHHH
Q 014880 202 YRWIAYSSI 210 (416)
Q Consensus 202 ~~~~~~~~~ 210 (416)
|+..+...+
T Consensus 431 ~~~~~~~~~ 439 (496)
T PRK03893 431 LGTALASLS 439 (496)
T ss_pred hHHHHHHHH
Confidence 666654443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.9e-08 Score=92.69 Aligned_cols=152 Identities=11% Similarity=0.080 Sum_probs=109.1
Q ss_pred CchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHH
Q 014880 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (416)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~ 101 (416)
+.++.+.+....+...........+.|.|++|.|.++.++|.+..+..+...+..++.|++.||+|+|+. +..+.+...
T Consensus 203 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~-l~~~~~~~~ 281 (382)
T TIGR00902 203 KNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL-LLISAIACV 281 (382)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH-HHHHHHHHH
Confidence 3444556666666667777778889999998889999999999999999999999999999999999886 666666666
Q ss_pred HHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHH-HHHHHHHHHHH
Q 014880 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLY 180 (416)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~-~~~~~g~~l~~ 180 (416)
+....... ..+.+... ....+.+++++...++...++.+. ++++|++.++..+ ....+|..+++
T Consensus 282 ~~~~~~~~---------~~~~~~~~----~~q~l~g~~~~~~~~~~~~~i~~~--~~~~~~~~q~~~~~~~~g~g~~~g~ 346 (382)
T TIGR00902 282 GRWAIIGA---------IEAFPLIF----LLQILHCGTFAVCHLAAMRYIAAQ--PGSEIAKLQALYNALAMGGLIAIFT 346 (382)
T ss_pred HHHHHHHh---------HhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHhC--CHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66544321 11112111 223356677777777777777765 3567788888764 45678888888
Q ss_pred HHHHHHHHh
Q 014880 181 AIAFIVFSV 189 (416)
Q Consensus 181 ~~~~~l~~~ 189 (416)
.+++.+.+.
T Consensus 347 ~~~G~l~~~ 355 (382)
T TIGR00902 347 AFAGFIYPT 355 (382)
T ss_pred HHHHHHHHh
Confidence 888877754
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.1e-08 Score=94.21 Aligned_cols=146 Identities=5% Similarity=-0.013 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHH
Q 014880 252 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFC 330 (416)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~ 330 (416)
++.+.+..++.....+....++|.|+++++|.+..+.++..+...+...+..+..|++ ||+++| +.+.++..+..++
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k--~~~~~~~~~~~~~ 86 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKK--RYMLLAITAFASG 86 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc--hhHHHHHHHHHHH
Confidence 4556667777778888888999999999999999999998888888888888887776 444444 7777777666666
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 331 GAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
...+.+.+ +.+..++...+.+.+.+...+...+...+..++++++ ...++.+....+|..+++.+.+.+
T Consensus 87 ~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~lg~~igp~l~~~l 155 (395)
T PRK10054 87 FIAIPLVN--NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKT--KIFSLNYTMLNIGWTVGPPLGTLL 155 (395)
T ss_pred HHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544 5555555555666666666666666667777777766 566666666666666665555544
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-07 Score=89.17 Aligned_cols=193 Identities=13% Similarity=0.089 Sum_probs=137.5
Q ss_pred CCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHH
Q 014880 21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIG-LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (416)
Q Consensus 21 ~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g-~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~ 99 (416)
++.++...+-+..+..+......+.|.+.|++|.| .+....|.+.+++.+.....-...+++..|+|.|+. +..+.+.
T Consensus 204 lk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~l-l~~a~~~ 282 (400)
T PF03825_consen 204 LKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWL-LLLALVA 282 (400)
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHH
Confidence 34555666777777788888889999999999995 888899999999999999888999999999999876 6677777
Q ss_pred HHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHH-HHHHHHHH
Q 014880 100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLS 178 (416)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~-~~~~g~~l 178 (416)
.++=..+... ...+.........+...+.++.++....+...++.+..| ++.|++.+++... ...+|..+
T Consensus 283 ~~vR~~l~a~--------~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p-~~~~at~Q~l~~~~~~Glg~~i 353 (400)
T PF03825_consen 283 YAVRWLLYAY--------FSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAP-PELRATAQGLYSALSFGLGGAI 353 (400)
T ss_pred HHHHHHHHHH--------hcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHhhHHHHH
Confidence 7776554421 001111111222211234667788887888888888775 6789999998765 46789999
Q ss_pred HHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 014880 179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP 227 (416)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~ 227 (416)
+..+++.+.+.++.. ....|...+.+.+++.++..++.+...||+
T Consensus 354 G~~igG~l~~~~g~~----~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 354 GSLIGGWLYDAFGAR----GMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHHhcch----hhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 999999999877632 234566666666666666666666666664
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.91 E-value=5e-09 Score=102.38 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=105.4
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhccc--CCchhhHHh-HHHHHHHHH
Q 014880 28 YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGA-GSVLVAVSF 104 (416)
Q Consensus 28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~--Grrk~~ll~-~~~~~~~~~ 104 (416)
.+....+...........+++.|.++.|.++.+++.+.++..+...+++|+.|+++||. ++|+..++. +.+...++.
T Consensus 245 ~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ 324 (455)
T TIGR00892 245 VYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTH 324 (455)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHH
Confidence 33344444444555556788999988899999999999999999999999999999984 333332222 222222222
Q ss_pred HHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHH
Q 014880 105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 184 (416)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~ 184 (416)
.+.. ...+.+ ..... ..+.+++++.......+++.+..+ ++++++..++.+....+|..+++.+.+
T Consensus 325 ll~~---------~~~~~~-~~~i~---~~~~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~igp~i~G 390 (455)
T TIGR00892 325 LLCA---------LAGDYT-GLVIY---CIFFGLSFGSVGALLFEVLMDLVG-AQRFSSAVGLVTIVECCAVLIGPPLAG 390 (455)
T ss_pred HHHH---------HhchHH-HHHHH---HHHHHHHhchHHHHHHHHHHHHhh-HHHHhhHHhHHHHHHHHHHHcccccee
Confidence 2211 011222 22222 225666666666677777777764 578899999999989999888777666
Q ss_pred HHHHhccccccCchhhHHHHHHHHHHHHHHHH
Q 014880 185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCF 216 (416)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 216 (416)
.+.... .+|++.+.+.+++.++.
T Consensus 391 ~l~~~~---------g~~~~~f~~~~~~~li~ 413 (455)
T TIGR00892 391 RLVDAT---------KNYKYIFYASGSIVVSA 413 (455)
T ss_pred eeehhc---------CCcchHHHHhhHHHHHH
Confidence 555321 24777766665544443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.3e-08 Score=92.31 Aligned_cols=172 Identities=15% Similarity=0.007 Sum_probs=104.9
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH-HHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHh
Q 014880 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQI-ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (416)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~-~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~ 107 (416)
.....+...........+.++|++|.|.+++++|++..+..+ ...++..+.|++.||+|+||.. ..+...........
T Consensus 213 ~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l-~~~~~~~~~~~~~~ 291 (390)
T TIGR02718 213 LLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTF-ILGVGLAGSLALLW 291 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHH
Confidence 334445555656667778899999999999999999888765 4445678999999999998874 43433332221111
Q ss_pred hCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 014880 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (416)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~ 187 (416)
.. .. ............. .. .+.++..+.......+...+...+++++++..+..+...++|..+++.+++.+.
T Consensus 292 ~~--~~-~~~~~~~~~~~~~-~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~ 364 (390)
T TIGR02718 292 FA--QA-AFWLAPGIAVAWS-CS---AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT 364 (390)
T ss_pred HH--HH-HcccCCcHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 00 0000011111111 11 122334444445555555555544477899999999999999999888887777
Q ss_pred HhccccccCchhhHHHHHHHHHHHHHHHHHH
Q 014880 188 SVSTAKTHADLENQYRWIAYSSIFIGCCFVG 218 (416)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 218 (416)
+ ..|++..+...+++.++...
T Consensus 365 ~----------~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 365 D----------RFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred H----------HHccHHHHHHHHHHHHHHHH
Confidence 4 34677777776665555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-07 Score=92.35 Aligned_cols=139 Identities=21% Similarity=0.142 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCccc
Q 014880 38 ITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (416)
Q Consensus 38 ~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~ 116 (416)
........++|.|+++. |.|+.+.|.......+...++.|+.|++.||+|||+. +..+.+...++...+.. .
T Consensus 273 ~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-~~~g~~~~~~~~~~l~~---~--- 345 (495)
T PRK14995 273 ITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLV-ATGGMALSALSFYGLAM---T--- 345 (495)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHHHHHH---h---
Confidence 33444556788999987 9999999999999999999999999999999999775 56666655555433321 0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 014880 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (416)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~ 188 (416)
....+.+..... ..+.+++.+....+....+.+.. ++++++...+..+...++|..++..+.+.+..
T Consensus 346 ~~~~~~~~~~~~----~~l~G~g~g~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 346 DFSTQQWQAWGL----MALLGFSAASALLASTSAIMAAA-PPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred cCCCchHHHHHH----HHHHHHhHHHHHHHHHHHHHhcC-CHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222111 23567777777666666666555 36788999998888888888888777776654
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=4e-08 Score=95.60 Aligned_cols=176 Identities=10% Similarity=0.088 Sum_probs=106.3
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHh
Q 014880 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (416)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~ 107 (416)
+....+...........+.+.|.++. + ++.+.+.+..+..+...++.++.|+++||+||||. +..+.+..+++....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~-~~~~~~~~~~~~~~~ 304 (437)
T TIGR00792 227 LCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKIL-FAGGILLMVLGYLIF 304 (437)
T ss_pred HHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHH
Confidence 33344444444443333444444444 5 56677888888889999999999999999999887 445555555554333
Q ss_pred hCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCC------CccchhHHHhHHHHHHHHHHHHHHH
Q 014880 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITL------NSTSRVVLTSCRNAFTMVANLSLYA 181 (416)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~------~~~~r~~~~~~~~~~~~~g~~l~~~ 181 (416)
.. .+ .+.....+ ...+.+++.+.......++++|..+ ++++++...+..+....+|..+++.
T Consensus 305 ~~-------~~-~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~ 372 (437)
T TIGR00792 305 FF-------AG-SNLPLILV----LIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGF 372 (437)
T ss_pred HH-------cc-hhHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHH
Confidence 21 11 11121111 1224566677666777777777643 2345688889999999999999998
Q ss_pred HHHHHHHhccccccC----chhhHHHHHHHHHHHHHHHHHH
Q 014880 182 IAFIVFSVSTAKTHA----DLENQYRWIAYSSIFIGCCFVG 218 (416)
Q Consensus 182 ~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~ 218 (416)
+.+.+....+..... +...+.++.+.....+..+..+
T Consensus 373 i~g~ll~~~G~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~ 413 (437)
T TIGR00792 373 LVGLILGIIGYVANAAQSPITLNGIKILMFAVPALFLLLAA 413 (437)
T ss_pred HHHHHHHHcCCCcCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888765543211 1123555555544444433333
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-07 Score=91.78 Aligned_cols=140 Identities=13% Similarity=0.044 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHh-hCCccCcc
Q 014880 38 ITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV-FGGCMPCR 115 (416)
Q Consensus 38 ~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~-~~~~~~~~ 115 (416)
..+.....+.|.|+++. |.++.+.++...+..+...++.++.|+++||+||||..+.............. .. +
T Consensus 252 ~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~---~-- 326 (434)
T PRK15075 252 VSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL---V-- 326 (434)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH---H--
Confidence 34455667899999886 99999999998888899999999999999999999875443332222221111 10 0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHH-HHHHHHHHHHHHHHHHHHh
Q 014880 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYAIAFIVFSV 189 (416)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~-~~~~g~~l~~~~~~~l~~~ 189 (416)
............. +.+++.+...........|..+ +++|++..++.+. +..+++.+++.+.+.+.+.
T Consensus 327 --~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~e~~p-~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~ 394 (434)
T PRK15075 327 --AAPSFARMLAVEL----WLSFLYGSYNGAMVVALTEVMP-AEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV 394 (434)
T ss_pred --cCCchHHHHHHHH----HHHHHHHHHHhhHHHHHHHHCC-CCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 1111111111111 2233444444444566677765 5678888777433 2333344455555555543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-07 Score=89.67 Aligned_cols=142 Identities=13% Similarity=0.098 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCc
Q 014880 35 LNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC 114 (416)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~ 114 (416)
.....+.....++|.|+++.|.++.+.+.+.++..+...+++++.|+++||+++||..+..+.....++...+..
T Consensus 208 ~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~----- 282 (355)
T TIGR00896 208 LQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF----- 282 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH-----
Confidence 334455566678999998889999999999999999999999999999999965554455555555555433321
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 014880 115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (416)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~ 190 (416)
.+. ...+ . + ..+++++.+...+...+...+..+++++++...++.+....++..+++.+.+.+.+..
T Consensus 283 --~~~-~~~~--~-~---~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~ 349 (355)
T TIGR00896 283 --APM-HGLW--A-W---ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS 349 (355)
T ss_pred --hhh-hHHH--H-H---HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 1111 1 1 1245666666555545555554545566788888877777788788777777776543
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-07 Score=90.72 Aligned_cols=135 Identities=10% Similarity=0.042 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCccccccc
Q 014880 42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (416)
Q Consensus 42 ~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (416)
....+.|.|+.+. |.++.+.|+......+...++.++.|+++||+||||. +..+.+...++..+... .+. ....
T Consensus 233 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~-~~~~~~~~~~g~~~~~~--~~~--~~~~ 307 (406)
T PRK15402 233 AWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSL-IRMGLWPMVAGLLLAAL--ATV--ISSH 307 (406)
T ss_pred HHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHH--HHH--cccc
Confidence 3445578787765 9999999998887778888899999999999999887 55555544444333221 010 0011
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 014880 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (416)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~ 187 (416)
+..+..... .+.+.+.+....+..+.... . .+++|++..+..+....+|..+++.+...+.
T Consensus 308 ~~~~~~~~~----~~~g~g~~~~~~~~~~~~~~-~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~ 368 (406)
T PRK15402 308 AYLWLTAGL----SLYAFGIGLANAGLYRLTLF-S-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAY 368 (406)
T ss_pred cHHHHHHHH----HHHHHHHHHHhhhHHHHHhh-h-ccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 122221111 24555555544444433322 2 2478999999888888888777665555443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-07 Score=89.43 Aligned_cols=147 Identities=10% Similarity=0.090 Sum_probs=96.8
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHH
Q 014880 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (416)
Q Consensus 27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~ 106 (416)
+.+....+..+........+++.|.+|.|.++.++|.+.++..+...+.+++.|++.||+|+|+. +..+.+...+....
T Consensus 208 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-l~~~~~~~~~~~~~ 286 (382)
T PRK11128 208 WRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL-LLLSAICGVVRWGL 286 (382)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHH
Confidence 33444445455555566778889998889999999999999999999999999999999999887 55555555555433
Q ss_pred hhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHH-HHHHHHHHHHHHHHHH
Q 014880 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYAIAFI 185 (416)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~-~~~~~g~~l~~~~~~~ 185 (416)
+.. ..+.+...+ ...+.+++++...+.......+. +++++++..+... ....+|..+++.+++.
T Consensus 287 ~~~---------~~~~~~~~~----~~~l~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~ 351 (382)
T PRK11128 287 MGS---------TTALPWLIV----IQILHCGTFTVCHLAAMRYIAAR--PGSEVIRLQALYSALAMGGSIAIMTVLSGF 351 (382)
T ss_pred HHh---------hhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC--CHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 112222211 22356666666666666666654 3455677777664 4445566777777777
Q ss_pred HHHh
Q 014880 186 VFSV 189 (416)
Q Consensus 186 l~~~ 189 (416)
+.+.
T Consensus 352 l~~~ 355 (382)
T PRK11128 352 LYQH 355 (382)
T ss_pred HHHh
Confidence 7643
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.4e-08 Score=96.14 Aligned_cols=145 Identities=11% Similarity=0.091 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccchhhhhHHHHHHHHHHHHHHHHHHHH-HH-HhhhhHHHHHHHHHHH
Q 014880 252 YYQVALVYMLTRLVVNVSQAYLAFYVIND--LRMGQSAKALVPAIIYICSFIVSILLQEM-AW-TGQRLKAYYSAGGVLW 327 (416)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~-~~~r~~~~~~~~~~~~ 327 (416)
++.+.+..++..+.++....++|.|+.++ +|.+..+.+.+.....+...++.++.|++ || +++| +.+.++..+.
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~--~~l~~~~~~~ 89 (475)
T TIGR00924 12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK--KTMVLGGIVL 89 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH--HHHHHHHHHH
Confidence 55566677777888889999999999887 89999999988888888888888888877 44 4554 7888888777
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccc---cccchhhhhHHHHHHHHHHHHHHHHHhh
Q 014880 328 VFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGED---LSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (416)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---~~G~g~~~~~~~~~~~~g~~ig~~l~~~ 402 (416)
+++...+.+.+ +.+.+.+...+.|++.|...+...++..+..+++ +++ .+++....+.++|..+|+.+.+.
T Consensus 90 ~~g~~~~~~~~--~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~--~~~~~~~~~~niG~~ig~~l~g~ 163 (475)
T TIGR00924 90 MLGHFMLAMSI--YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRD--GGFTLFYMSINIGSFISPLLAGV 163 (475)
T ss_pred HHHHHHHHhcc--cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccccc--ceehhHHHHHHHHHHHHHHHHHH
Confidence 77766665543 4555556667888998887777766665555432 233 34444444445555444444443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.4e-08 Score=93.42 Aligned_cols=172 Identities=8% Similarity=-0.057 Sum_probs=99.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHH---HHHHHh
Q 014880 32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA---VSFSSV 107 (416)
Q Consensus 32 g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~---~~~~~~ 107 (416)
..+...........++|.|+++. |.++.+.++...+..+...++.++.|+++||+||+|.... +..... ++....
T Consensus 259 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~-~~~~~~~~~~~~~~~ 337 (438)
T TIGR00712 259 ANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGAT-GVFFMTLVTIAVIVY 337 (438)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHH-HHHHHHHHHHHHHHH
Confidence 33333444455667899999986 9999999999999999999999999999999975443222 222111 111111
Q ss_pred hCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHH-HHHHHHHHHH
Q 014880 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN-LSLYAIAFIV 186 (416)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~-~l~~~~~~~l 186 (416)
.. ....+.+...... ...+.+.............+..+ +++|++..++.+....+|. ++++.+.+.+
T Consensus 338 ~~-------~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l 405 (438)
T TIGR00712 338 WM-------NPAGNPLVDMICM----IVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAASAIVGYT 405 (438)
T ss_pred Hh-------cCCCchHHHHHHH----HHHHHHHccHHHHHHHHHHHhcC-hhheeeehhhhchHHHhhhhhhcchhHHHH
Confidence 11 1111112111111 11222111111111233445554 6789999998877666653 5666666665
Q ss_pred HHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014880 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (416)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e 226 (416)
.. ..||...+.+...+.++..+......+|
T Consensus 406 ~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (438)
T TIGR00712 406 VD----------FFGWDGGFMVMIGGSILAVILLIVVMIG 435 (438)
T ss_pred HH----------hccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 53 3467777777666666665555566665
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-07 Score=93.54 Aligned_cols=180 Identities=13% Similarity=0.021 Sum_probs=102.1
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhh-------HHh
Q 014880 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIW-------HGA 95 (416)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~-------ll~ 95 (416)
+..+...+..+...........++|.|+++. |.+..+.|+..++..+...++.++.|+++||.++||.. +..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 340 (465)
T TIGR00894 261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFN 340 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 3445566666666777777778999999886 99999999999999999999999999999997655321 111
Q ss_pred HHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHH
Q 014880 96 GSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA 175 (416)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g 175 (416)
+..........+.. + ....+......... +.+.+.+...........+.. ++.++...++.+....+|
T Consensus 341 ~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~l~ 408 (465)
T TIGR00894 341 GIGGLGPGIFAYAL---P---YLSAAFYLTIIILT----LANAVSSGPLAGVLINSLDLA--PRFLGFIKGITGLPGFIG 408 (465)
T ss_pred HHHHHHHHHHHHHH---H---HcCCchHHHHHHHH----HHHHHhhhhhhhhhhchhhcC--hhHHHHHHHHHHHHHHHH
Confidence 11111111111100 0 00111111111111 222222222233333444444 346777777777766666
Q ss_pred HHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 014880 176 NLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLS 222 (416)
Q Consensus 176 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 222 (416)
..+++.+.+.+.. . +...+|+..+.+.+++.++..++...
T Consensus 409 ~~i~p~l~g~~~~----~---~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 409 GLIASTLAGNILS----Q---DSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHhhheeeC----C---CCchHHHHHHHHHHHHHHHHHHHeee
Confidence 6665444433321 1 11246888988887777766655443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=9e-08 Score=92.79 Aligned_cols=131 Identities=15% Similarity=0.112 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccch
Q 014880 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (416)
Q Consensus 43 ~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (416)
...++|.|+++.|.++.+.+...+...+...+++++.|+++||+||||. +..+.+...+....... .+ ...
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~~~~~--~~-----~~~- 320 (426)
T PRK12307 250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKT-FSIGLLMSFLFIFPLFR--IP-----QDN- 320 (426)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHH--Hc-----ccc-
Confidence 4567888888889999999999999999999999999999999999887 44444443333222211 01 111
Q ss_pred hhHHHHHHHHHHHHHHHHH--HHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 014880 123 KVETISYCVFAAIFNVGWA--ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (416)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~--~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~ 188 (416)
... .... .++.+.. .......+.+.|..+ +++|++..++......+|..+++.+.+.+..
T Consensus 321 ~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~ 382 (426)
T PRK12307 321 YLL-LGAC----LFGLMATNVGVGGLVPKFLYDYFP-LEVRGLGTGLIYNLAATSGTFNSMAATWLGI 382 (426)
T ss_pred HHH-HHHH----HHHHHHhcccHhHHHHHHHHHhCc-HHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 111 1111 1221111 111223345566664 6789999998888888888888777766653
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-07 Score=90.42 Aligned_cols=126 Identities=13% Similarity=0.089 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcc
Q 014880 37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (416)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~ 115 (416)
...++....++|.|+++. |.+..+.+....+..+...+.+++.|+++||+||||..++...+..+........ .
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~--- 330 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSA--L--- 330 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH--H---
Confidence 444555677899999875 9999999999988888889999999999999999987444333222222111110 0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHH
Q 014880 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM 173 (416)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~ 173 (416)
....+.... ..... +.....+.......+..+|..+ ++.|++..++.+...+
T Consensus 331 -~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~e~fp-~~~r~t~~g~~~~~g~ 382 (432)
T PRK10406 331 -QNVSSPYAA-FGLVM---CALLIVSFYTSISGILKAEMFP-AQVRALGVGLSYAVAN 382 (432)
T ss_pred -HcCCcHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHCC-CCccchhhhHHHHHHH
Confidence 001111111 11111 1111222222334566778875 6789999888765433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-07 Score=93.07 Aligned_cols=147 Identities=15% Similarity=0.063 Sum_probs=100.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhh
Q 014880 30 GSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (416)
Q Consensus 30 ~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~ 108 (416)
....+...........++|.|+++. |.++.+.|+......+...++.++.|++.||+|||+. +..+.....++...+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-~~~g~~~~~~~~~~~~ 339 (485)
T TIGR00711 261 CVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKL-VTIGLILYAVGFYWRA 339 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH-HHHHHHHHHHHHHHHh
Confidence 3333444445555567889999986 9999999999999999999999999999999999886 5555555555544332
Q ss_pred CCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 014880 109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (416)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~ 187 (416)
.. ..+..+....... ..+.+++.+....+......+.. ++++|+++.+..+....+|..+++.+.+.+.
T Consensus 340 ~~-----~~~~~~~~~~~~~----~~l~g~g~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~ 408 (485)
T TIGR00711 340 FT-----FTPDTPFLAIALP----QFIRGFGMGCFFMPLTTIALSGL-PPHKIARGSSLSNFTRQLGGSIGTALITTIL 408 (485)
T ss_pred cc-----CCCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcC-CHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0111222222121 22556666666666555555544 4678999999999999999888877766655
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-07 Score=90.76 Aligned_cols=155 Identities=12% Similarity=0.065 Sum_probs=99.4
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHH
Q 014880 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF 104 (416)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~ 104 (416)
...+....+.............+.|.++. |.++...++......+...+..|+.++++||+|+||. +..+.++.+++.
T Consensus 230 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~-~~~g~~~~~i~~ 308 (448)
T PRK09848 230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNT-FLIGALLGTCGY 308 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHH
Confidence 33344444444455455555566677775 8777666665555566777899999999999999887 555555555554
Q ss_pred HHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCc------cchhHHHhHHHHHHHHHHHH
Q 014880 105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS------TSRVVLTSCRNAFTMVANLS 178 (416)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~~r~~~~~~~~~~~~~g~~l 178 (416)
..+.. .+..+.+.... ...+.++|.+.......++.+|..+.. ++++...+..+....+|..+
T Consensus 309 ~~~~~-------~~~~~~~~~~~----~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~ai 377 (448)
T PRK09848 309 LLFFW-------VSVWSLPVALV----ALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAI 377 (448)
T ss_pred HHHHH-------cCchhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHH
Confidence 44321 11112222111 123566777777777788888766422 23477788888999999999
Q ss_pred HHHHHHHHHHhccc
Q 014880 179 LYAIAFIVFSVSTA 192 (416)
Q Consensus 179 ~~~~~~~l~~~~~~ 192 (416)
++.+.+.+....+.
T Consensus 378 g~~i~g~~l~~~G~ 391 (448)
T PRK09848 378 GGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHcCC
Confidence 88888777766554
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-07 Score=88.31 Aligned_cols=141 Identities=9% Similarity=0.034 Sum_probs=98.7
Q ss_pred hHHHHHHHHHH-HHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCc
Q 014880 34 MLNDITAACWF-TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (416)
Q Consensus 34 ~~~~~~~~~~~-~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~ 111 (416)
+.......... .+.|.|.++. |.++.+.+.+.....+...++.++.|++.||+|||+. +..+.....++......
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~-- 296 (365)
T TIGR00900 220 LLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMAL-MTGAIFVIGLAILVVGL-- 296 (365)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHHh--
Confidence 33344443344 6778888875 9999999999999999999999999999999999886 44444444443333221
Q ss_pred cCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 014880 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (416)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~ 188 (416)
... +.+...+ ...+.+++.+...+...+++.|..+ +++|++..+..+....++..+++.+.+.+.+
T Consensus 297 -----~~~-~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 297 -----TPP-NFPLFLV----LWFAIGVGYGPINVPQGTLLQRRVP-AELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred -----hch-hHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1121112 2235667777777777788888775 6889999999999999999888887777664
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-07 Score=90.61 Aligned_cols=158 Identities=19% Similarity=0.171 Sum_probs=110.7
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHH
Q 014880 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (416)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~ 101 (416)
.+....+....+...+.+.......++|.++. |.+ ...+.+..+..+...+..|++++++||+||||.+ ..+....+
T Consensus 224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~-~~~~~~~~ 301 (428)
T PF13347_consen 224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVY-IIGLLLAA 301 (428)
T ss_pred cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeeh-hhhHHHHH
Confidence 34445566666667777777777888888886 666 5778888888999999999999999999999984 45555555
Q ss_pred HHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcc------chhHHHhHHHHHHHHH
Q 014880 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST------SRVVLTSCRNAFTMVA 175 (416)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------~r~~~~~~~~~~~~~g 175 (416)
++....+. .+..+.++..+.. .+.+++.+.......++.+|..+..| +.+...+.......++
T Consensus 302 ~~~~~~~~-------~~~~~~~~~~i~~----~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~ 370 (428)
T PF13347_consen 302 LGFLLLFF-------LGPGSPWLVLILF----ILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIG 370 (428)
T ss_pred HHHHHHHH-------HHhhhHHHHHHHH----HHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHH
Confidence 55444331 1112223222222 36778888888888899998775332 2366788888888899
Q ss_pred HHHHHHHHHHHHHhcccc
Q 014880 176 NLSLYAIAFIVFSVSTAK 193 (416)
Q Consensus 176 ~~l~~~~~~~l~~~~~~~ 193 (416)
..++..+.+.+....+..
T Consensus 371 ~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 371 QGLAGAIVGLLLALVGYD 388 (428)
T ss_pred HHHHHHHHHHHHHHhCcC
Confidence 988888888877776543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-07 Score=93.31 Aligned_cols=153 Identities=16% Similarity=0.015 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCch-----hhHHhHH-HHHHHHHHHhhCCccCc
Q 014880 42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFK-----IWHGAGS-VLVAVSFSSVFGGCMPC 114 (416)
Q Consensus 42 ~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk-----~~ll~~~-~~~~~~~~~~~~~~~~~ 114 (416)
....++|.|+.+. |.++.+++.+.++..+...++.++.|+++||+|||+ .++.... ....+.... . +
T Consensus 270 ~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~-~----~- 343 (476)
T PLN00028 270 TMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIW-L----G- 343 (476)
T ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHH-h----c-
Confidence 3455788888776 999999999999999999999999999999998752 2222111 111111111 1 1
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 014880 115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT 194 (416)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~ 194 (416)
...+......... +++.+.........++.+++. +++|+...++...+..+|..+++ .+... .
T Consensus 344 ---~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~g~lg~~i~~----~l~~~-~--- 406 (476)
T PLN00028 344 ---RANSLGAAIVVMI----LFSIFVQAACGATFGIVPFVS--RRSLGVISGLTGAGGNVGAVLTQ----LLFFT-G--- 406 (476)
T ss_pred ---ccchHHHHHHHHH----HHHHHHHHhhhhhcccCcccC--hhhchhhhhhhhccccHHHHHHH----HHHHh-c---
Confidence 0111111111111 233333333333445555543 46788888887666655655543 33321 1
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHH
Q 014880 195 HADLENQYRWIAYSSIFIGCCFVGIF 220 (416)
Q Consensus 195 ~~~~~~~~~~~~~~~~~i~~~~~~~~ 220 (416)
...+|+..+.+.+++.++..++.
T Consensus 407 ---~~~~y~~~f~~~~~~~~i~~~~~ 429 (476)
T PLN00028 407 ---SSYSTETGISLMGVMIIACTLPV 429 (476)
T ss_pred ---CCccHhhHHHHHHHHHHHHHHHH
Confidence 13468888888776666655544
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-07 Score=81.64 Aligned_cols=133 Identities=13% Similarity=0.125 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccc
Q 014880 39 TAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (416)
Q Consensus 39 ~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~ 117 (416)
.+..+...-|.++++- |+|+..++.+.+......++.+|+.|.++||+||+..|...+.+...++=..++.+
T Consensus 279 a~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft------- 351 (459)
T KOG4686|consen 279 AWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT------- 351 (459)
T ss_pred HHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh-------
Confidence 3333344456788886 99999999999999999999999999999999998888877777777664333321
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 014880 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (416)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~ 187 (416)
..+++ ... .+.|..++...-+.+.+++.+.+ +++-|++.++.+...++|-.+.+.+.+.+.
T Consensus 352 -~lsPy---~~m----~~lGLsysllAcslWP~va~~vp-E~qLGTaygf~qsIqNLgla~i~Iiag~i~ 412 (459)
T KOG4686|consen 352 -FLSPY---TSM----TFLGLSYSLLACSLWPCVASLVP-EEQLGTAYGFIQSIQNLGLAFIPIIAGFIA 412 (459)
T ss_pred -hccHH---HHH----HHHhhhHHHHHHHHhhhhhhhCC-HHHhcchHHHHHHHHhhhhhHHhhhhheee
Confidence 11111 111 14555566555556666776664 678899999999999999888777665555
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-07 Score=89.81 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHH
Q 014880 254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA 332 (416)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~ 332 (416)
.+....++.....+....+.+.|++++.|.+..+.+.......+...+.+++.|++ ||+++ |+.+..+..+..++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~--k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 14 FLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGA--KPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCc--hHHHHHHHHHHHHHHH
Confidence 34556666767777788899999999999999999988888777777777777765 44444 4777888877777766
Q ss_pred HHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 333 GILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
.....+ +.+.+++..++.|++.+...+...+...+..|++++| .+.+..+....+|..+|+.+.+.+
T Consensus 92 ~~~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~g~~ig~~l~g~l 158 (400)
T PRK11646 92 TMAIAH--EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRG--RFFSLLMMQDSAGAVIGALLGSWL 158 (400)
T ss_pred HHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655443 6666777778889988887777777777777777777 677776666666666666555544
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-08 Score=71.02 Aligned_cols=60 Identities=25% Similarity=0.383 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHh
Q 014880 36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGA 95 (416)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~ 95 (416)
.....+.+.+|++.|+++.|+|+.++|.+.++..+...+++|++|.++||+||+|..+..
T Consensus 12 ~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~ 71 (77)
T PF12832_consen 12 YFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLG 71 (77)
T ss_pred HHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHH
Confidence 345667788999999999999999999999999999999999999999999999985443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.7e-07 Score=86.71 Aligned_cols=186 Identities=12% Similarity=0.093 Sum_probs=124.3
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCc--hhhHHhHHHH
Q 014880 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHF--KIWHGAGSVL 99 (416)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grr--k~~ll~~~~~ 99 (416)
.++...|-++.+..+-..+.+..+...|.++. |++..+...+..+.++...++..++|++.||+|.| |. ++...+.
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~-l~~~l~~ 358 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRT-LLISLIL 358 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH-HHHHHHH
Confidence 34555677776766666677778888899876 99999999999999999999999999999999998 66 3333333
Q ss_pred H-HHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHH
Q 014880 100 V-AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 178 (416)
Q Consensus 100 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l 178 (416)
. ++....++. ..+. .....+.+. +.+...+.|+..+..+....++.+++.| +++.+...|+........+.+
T Consensus 359 ~~~i~~~g~~G-~~~~-~~g~~~~~~----f~~~a~~~G~~~G~~qs~sRs~~~~LiP-~g~e~efFgly~i~gk~ss~l 431 (477)
T PF11700_consen 359 WIIIPLYGLFG-FWPS-FFGLKSPWE----FWVLAVLIGLFMGGIQSASRSLFSRLIP-PGREAEFFGLYAITGKASSWL 431 (477)
T ss_pred HHHHHHHHHHH-hhhc-ccCcccHHH----HHHHHHHHHHHhhhHHHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHHH
Confidence 3 333222210 0010 011122222 2223346778888888888999999997 456689999999999999999
Q ss_pred HHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014880 179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (416)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e 226 (416)
++.+.+.+....+ ..|+.+....++.++..++. ..+++
T Consensus 432 GPll~g~i~~~tg---------~~r~g~~~l~~lf~~gl~ll-~~v~~ 469 (477)
T PF11700_consen 432 GPLLFGLITDATG---------SQRYGFLFLLVLFLIGLILL-FFVDV 469 (477)
T ss_pred HHHHHHHHHHHhC---------CchhHHHHHHHHHHHHHHHH-hhccc
Confidence 8888877776543 24555555444444443333 34444
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.8e-07 Score=81.55 Aligned_cols=168 Identities=11% Similarity=0.037 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcc
Q 014880 36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (416)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~ 115 (416)
.+..++.+..++|.++.|.|+|+.+.|++.+...+.+.......-.+.+|..-+|++.........++...+.. .|
T Consensus 220 qS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~--~P-- 295 (395)
T COG2807 220 QSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLL--AP-- 295 (395)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH--hh--
Confidence 36778888999999999999999999999999999999999999999998766677666666666555544321 12
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 014880 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 195 (416)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~ 195 (416)
....+ . .. .+.|+|.+....-...++.+.++|+++-++.++..+..+++-+.+++.+.+.+.
T Consensus 296 ---~~~~~-l---w~---~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lh-------- 357 (395)
T COG2807 296 ---GQLPI-L---WA---LLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLH-------- 357 (395)
T ss_pred ---hhHHH-H---HH---HHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHH--------
Confidence 11111 1 11 256667666666667788888877777777777766655555544444443333
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014880 196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (416)
Q Consensus 196 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e 226 (416)
|...+|+..........+...+.-+..-|+
T Consensus 358 -Da~gsw~~~~~~l~~~~i~m~i~Gl~a~r~ 387 (395)
T COG2807 358 -DATGSWSAPLVLLALATLLMLIFGLRAGRN 387 (395)
T ss_pred -HhcCChHHHHHHHHHHHHHHHHHHhhcchh
Confidence 245578888887777777766665554443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.2e-06 Score=76.96 Aligned_cols=349 Identities=13% Similarity=0.107 Sum_probs=168.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhc-----ccCCchhhHHhHHHHHHHHHHHhhCCccCccccccc
Q 014880 46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID-----RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (416)
Q Consensus 46 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsD-----r~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (416)
-+|..++.-|.|-+..+....++. -.-...++..+.| |+||||.|+.-........... +..+++..+....
T Consensus 52 ~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mll-Ls~~v~~~~g~ng 128 (510)
T KOG3574|consen 52 AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLL-LSYLVDRGLGGNG 128 (510)
T ss_pred hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHH-HhhCCCcccccCC
Confidence 567666656888888776554432 2234678889999 9999999875433322222211 1112332222111
Q ss_pred -chh--hHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHH-------hc
Q 014880 121 -TLK--VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS-------VS 190 (416)
Q Consensus 121 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~-------~~ 190 (416)
.+. .....+. +..+..+..+++.....-.+- ++++-+-++.....+.+.|..++..+.-.+-. ..
T Consensus 129 ~~p~v~~lt~~f~----LLnflaAtQDIAVDgwALtmL-s~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~r 203 (510)
T KOG3574|consen 129 GLPNVVALTLLFL----LLNFLAATQDIAVDGWALTML-SRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLR 203 (510)
T ss_pred CCcchHHHHHHHH----HHHHHHhhhhhhhhHHHHHhc-CHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHh
Confidence 111 1111222 444555566666665555554 35667777777777777777765433211111 00
Q ss_pred cc-cccC-chhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHH---HHHHHHhhHHHHHHHHHHHHHHHH
Q 014880 191 TA-KTHA-DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARI---SWAYWFKKILYYQVALVYMLTRLV 265 (416)
Q Consensus 191 ~~-~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~l~~~~~~~~ 265 (416)
.. .+++ -.-.++-|. -+.+.++...+..+..||++.+..+++..+.++ .+++++|-|..+.++......-++
T Consensus 204 s~P~~~g~ItL~gy~~f---wg~~~~vat~Lv~~~kke~~~~~~~e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~g 280 (510)
T KOG3574|consen 204 SIPLDQGFITLAGYLWF---WGALFIVATTLVALLKKENDESVDEELELGIHESYKLLRDVLKLKSVRWLAGILLTGKLG 280 (510)
T ss_pred cCcCccceEEhhHHHHH---HHHHHHHHHHHHHHhcCCCchhhhhhhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence 00 0000 000122221 122222232333344455433322222333333 446677777777777766666666
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHH---HHhhhh-HH-HHHHHHHHHHHHHHHHhhcC--
Q 014880 266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMA---WTGQRL-KA-YYSAGGVLWVFCGAGILILP-- 338 (416)
Q Consensus 266 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~---~~~~r~-~~-~~~~~~~~~~~~~~~~~~~~-- 338 (416)
+..-....+.-+.|+ |.+..+.+.......-..++.....|++. +--+++ |. .+.+........ +.+..+
T Consensus 281 f~a~da~t~LkLle~-Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~--Lv~~~~~~ 357 (510)
T KOG3574|consen 281 FQAADALTSLKLLEH-GVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTA--LVWWTPTL 357 (510)
T ss_pred hhhhhhccchHHHHc-CCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHH--HHhhhccc
Confidence 666566666666664 88877665443222223333333333320 000111 21 122222222222 222222
Q ss_pred -C--ch----hHHHHH-HHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHH----HHHHHHHhhhccc
Q 014880 339 -M--NM----SAFMYV-LAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSC----GIAVYVLQSYQSK 406 (416)
Q Consensus 339 -~--~~----~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~----~ig~~l~~~~~~~ 406 (416)
. .. ...+.+ .-.+.+...-..+....+.-.+..+++-.| .++.+.|...++|+ .+..+++|.++.+
T Consensus 358 ~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~igg--TymTlLNTLsnLGg~wp~tv~l~l~D~ltv~ 435 (510)
T KOG3574|consen 358 GHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGG--TYMTLLNTLSNLGGNWPGTVALWLADGLTVK 435 (510)
T ss_pred ccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCc--cHHHHHHHHHHhcCCcHHHHHHHhcccCcee
Confidence 1 11 111111 112222222223334444455555666666 88888877777765 6778889999888
Q ss_pred hhhh
Q 014880 407 LCRL 410 (416)
Q Consensus 407 ~~~~ 410 (416)
.|-.
T Consensus 436 ~C~~ 439 (510)
T KOG3574|consen 436 QCVL 439 (510)
T ss_pred eccc
Confidence 7754
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.1e-07 Score=88.31 Aligned_cols=170 Identities=16% Similarity=0.095 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccc
Q 014880 42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST 121 (416)
Q Consensus 42 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (416)
....|-...+++.|++..++.++.....++..+...+...+.||.|||+. ++.+.....+..+.+.. ...+.....
T Consensus 288 ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpL-ll~~~~~~~~~~~~~~~---~~~l~~~~~ 363 (485)
T KOG0569|consen 288 AIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPL-LLISLSLMAVALLLMSI---ALFLSNSFG 363 (485)
T ss_pred eeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHHH---HHHHHHHhh
Confidence 34455566666679999999999999999999999999999999999765 55555554444333221 000011111
Q ss_pred hhhHHHHHH--HHHHHHHHHHHHHHhhh-hhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCch
Q 014880 122 LKVETISYC--VFAAIFNVGWAATQVAH-MSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL 198 (416)
Q Consensus 122 ~~~~~~~~~--~~~~~~~~~~~~~~~~~-~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~ 198 (416)
....|. ....++...++....|. .-+.+|+.+ ++.|..+.++......+.+.+.....+++...++
T Consensus 364 ---~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~-~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g------- 432 (485)
T KOG0569|consen 364 ---SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFP-QSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG------- 432 (485)
T ss_pred ---hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 111111 11123445555444444 345567774 7889999999999999999988887877776544
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 014880 199 ENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK 230 (416)
Q Consensus 199 ~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~ 230 (416)
.+.|.+..+..++..+..++.+||++.+
T Consensus 433 ----~~~filF~i~~~~~~i~~~~~lPETkgr 460 (485)
T KOG0569|consen 433 ----PYVFILFVIPLAIFLIYLYRYLPETKGR 460 (485)
T ss_pred ----chhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence 2566777777788888888999997644
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.7e-07 Score=85.01 Aligned_cols=143 Identities=13% Similarity=0.158 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHH
Q 014880 256 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI 334 (416)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~ 334 (416)
.+..++...........+|.++.+++|.+..+.+++.....++..++.++.|++ +|+++| +.+..+.++.+++....
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~l~~~~~~~~~~~~~~ 79 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR--RVLIIGLLLFALGSLLL 79 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH--HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe--eeEeehhhhhhhHHHHh
Confidence 344556656666667777768888899999999999988888889999888876 555554 67788877777774444
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhc
Q 014880 335 LILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (416)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~ 404 (416)
.+. ++.+.+++..++.|++.+...+....+..+..++++++ ...+..+....+|..+++.+.+.+.
T Consensus 80 ~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~l~~~l~ 145 (352)
T PF07690_consen 80 AFA--SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERG--RAFGILSAGFSLGSILGPLLGGFLI 145 (352)
T ss_dssp HHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHH--HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhh--hhHHHHhhhccccccccccccccccccccccchhhhhh--hccccccchhhhhhhcccchhhhhh
Confidence 333 35557778889999999999999988888888887777 7778888888888888877777665
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.3e-07 Score=90.57 Aligned_cols=155 Identities=11% Similarity=0.071 Sum_probs=95.7
Q ss_pred HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HH-HhhhhHHHHHH
Q 014880 246 WFKKIL-YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AW-TGQRLKAYYSA 322 (416)
Q Consensus 246 l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~-~~~r~~~~~~~ 322 (416)
.+|+|+ ++......++..+.++....+++.|+.+++|.+..+.+.+............++.|++ || +++| +.+..
T Consensus 16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r--~~~~~ 93 (500)
T PRK09584 16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK--RVIML 93 (500)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--HHHHH
Confidence 456664 7777778888888889999999999999999988776655544433333333455665 34 2443 77787
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhh
Q 014880 323 GGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (416)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~ 402 (416)
+..+..++...+.+.+ ++.+.+.+...+.|++.|...+...++..+..|+++......++..+.+.++|..+|+.+.+.
T Consensus 94 g~~~~~ig~~l~~~~~-~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~ 172 (500)
T PRK09584 94 GAIVLAIGYALVAWSG-HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPW 172 (500)
T ss_pred HHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 8777777765555443 234444556677888888877766666666554332111123344444555555555444443
Q ss_pred h
Q 014880 403 Y 403 (416)
Q Consensus 403 ~ 403 (416)
+
T Consensus 173 l 173 (500)
T PRK09584 173 L 173 (500)
T ss_pred H
Confidence 3
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.4e-07 Score=89.27 Aligned_cols=151 Identities=10% Similarity=0.076 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HH-HhhhhHHHHHHHHHHH
Q 014880 250 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AW-TGQRLKAYYSAGGVLW 327 (416)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~-~~~r~~~~~~~~~~~~ 327 (416)
|.++.+....+...+.+++...+++.|+++++|.+.++..++.........+..++.|++ |+ +++ |+.+.++.++.
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~--r~~~~~g~~~~ 91 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGT--KRTIVLGAIVL 91 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccch--HHHHHHHHHHH
Confidence 445666677788889999999999999999999998877666655554455555666665 33 344 48888898888
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeecccc--cc--chhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 328 VFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDL--SG--CAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--~G--~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
.++.....+.+ +....+++...+.++|.|...+...++..+.+|+++ ++ .+..+...+++..+|..+++++.+++
T Consensus 92 ~~g~~~~~~~~-~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~ 170 (489)
T PRK10207 92 AIGYFMTGMSL-LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF 170 (489)
T ss_pred HHHHHHHHHhc-cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88776666544 223334456677899999888877777777775442 23 22344444455555555556665554
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-06 Score=82.41 Aligned_cols=155 Identities=16% Similarity=0.084 Sum_probs=83.8
Q ss_pred HHHHHHHHH-hCCChHHHHHHHHHHH-HHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccch
Q 014880 45 TYLLLFLTD-IGLSPRGAAAVMLSGQ-IADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (416)
Q Consensus 45 ~~l~~~~~~-~g~s~~~~g~~~~~~~-~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (416)
.+.++++.+ .|.++.++|++..... +...++.++.|++.||+||||... .+.....+....+.. .. ....+.
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~-~~~~~~~l~~l~~~~--~~---~~~~~~ 303 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLM-LFGVLQAVSNLGYWV--LA---VTPKHL 303 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHH--HH---hcCCcH
Confidence 344555656 4999999999886544 457888999999999999988743 333333322211110 00 001111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHH
Q 014880 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY 202 (416)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~ 202 (416)
+.......+.....+++.+........++.+..+ .+++ +.......++...++.+++.+. +..||
T Consensus 304 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~l~~~~~~~~~G~l~----------~~~G~ 368 (402)
T PRK11902 304 WTMALAIGIENLCGGMGTAAFVALLMALCNRSFS-ATQY----ALLSALASVGRVYVGPTSGYLV----------EAYGW 368 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-HHHH----HHHHHHHHHHHHHHHHHHHHHH----------HHhCh
Confidence 2121211111123334444555555555554432 2233 3333444556555444555555 45688
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014880 203 RWIAYSSIFIGCCFVGIF 220 (416)
Q Consensus 203 ~~~~~~~~~i~~~~~~~~ 220 (416)
+..+.+.++++++..++.
T Consensus 369 ~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 369 PGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 988888877776665544
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.6e-07 Score=87.14 Aligned_cols=150 Identities=13% Similarity=0.090 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHH-hhhhHHHHHHHHHH
Q 014880 249 KILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWT-GQRLKAYYSAGGVL 326 (416)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~-~~r~~~~~~~~~~~ 326 (416)
.+.++......+...+.+++...++|.|+.+++|.++.+.+.+.........++.++.|++ ||+ ++| +.+.++.++
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr--r~iliG~il 85 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR--MAVMLGALL 85 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH--HHHHHHHHH
Confidence 3445566666777778888889999999999999999888877777777777788888776 454 554 777888877
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeecc----ccccchhhhhHHHHHHHHHHHHHHHHHh
Q 014880 327 WVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGE----DLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (416)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~----~~~G~g~~~~~~~~~~~~g~~ig~~l~~ 401 (416)
..++...+...+ ++....+....+..+|.|...+...++..+..|+ |..+.+..|...+++..++..+++++.+
T Consensus 86 ~~lg~lll~~~~-~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~ 163 (493)
T PRK15462 86 MAIGHVVLGASE-IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE 163 (493)
T ss_pred HHHHHHHHHHhh-cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh
Confidence 777755444322 1222233344455566666666556666666654 3333344444444444444444444443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00042 Score=67.14 Aligned_cols=216 Identities=8% Similarity=-0.032 Sum_probs=111.5
Q ss_pred ChHHHHHHHHHHHHHHHhh-hhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCc--ccccc---------c----
Q 014880 57 SPRGAAAVMLSGQIADGFA-TIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC--RILST---------S---- 120 (416)
Q Consensus 57 s~~~~g~~~~~~~~~~~i~-~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~---------~---- 120 (416)
.++.+.++-+...+..++. .|+.+++++|++|+|.+-..... ++..+.+...-..|. ...+. .
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~-F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~ 119 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISP-FLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGF 119 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHH-HHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhh
Confidence 3367888887776766666 89999999999999874332222 222211111000111 00000 0
Q ss_pred -------chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 014880 121 -------TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193 (416)
Q Consensus 121 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~ 193 (416)
..|..-+.|+. .-+++ .-....-.++..+|.+. .+|-.|..+....+.++|.++++.+...+.......
T Consensus 120 ~~~i~~~~~W~~~~FYv~-~elw~--~~vvS~lFW~fandi~t-~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~ 195 (472)
T TIGR00769 120 MGFIAILRIWSFALFYVM-AELWG--SVVLSLLFWGFANQITT-IDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASL 195 (472)
T ss_pred HHHHHHHhhhhHHHHHHH-HHHHH--HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 01111122221 11121 11222346788889885 677788999999999999998877766655321110
Q ss_pred ccCchhhHH----HHHHHHHHHHHHHHHHHHHhhccCccc-c---------ccccCCCchHHHHHHHHhhHHHHHHHHHH
Q 014880 194 THADLENQY----RWIAYSSIFIGCCFVGIFLSRTEEPRL-K---------MGLRGNSHARISWAYWFKKILYYQVALVY 259 (416)
Q Consensus 194 ~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~e~~~-~---------~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 259 (416)
.. ....| +..+.+..+...+...+.++.-++... + ++++++.+..+.++.++|+|..+.+++..
T Consensus 196 ~~--~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~v 273 (472)
T TIGR00769 196 GP--GVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPALKEKKVKPKMSTMESLKFLVSSPYILDLALLV 273 (472)
T ss_pred cc--ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhccccCCCCCCHHHHHHHHHhCHHHHHHHHHH
Confidence 00 11233 233344433333333333322221100 0 11122335678889999999888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 014880 260 MLTRLVVNVSQAYLAFYVIN 279 (416)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~ 279 (416)
++.....+....-.-..+.+
T Consensus 274 i~y~~~~nlve~~~k~~v~~ 293 (472)
T TIGR00769 274 IAYGISINLVEVTWKSKLKA 293 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77766666544333333333
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.6e-07 Score=85.05 Aligned_cols=143 Identities=14% Similarity=0.062 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHH
Q 014880 254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA 332 (416)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~ 332 (416)
...+.++...+.........|. +.+++|.+..+.++......++..++.++.|.+ ||+++| +.+..+.++.+++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r--~~~~~~~~~~~~~~~ 92 (405)
T TIGR00891 16 AAWLGWLLDAFDFFLVALVLAE-VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRR--LPMVTSIVLFSAGTL 92 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHHH
Confidence 3344455554444444455554 567789999999988888888889999888876 555554 777777777666655
Q ss_pred HHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 333 GILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
...+.+ +.+.+++..++.|++.+...+....+..+..++++++ .+.+..+....+|..+++.+...+
T Consensus 93 ~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~l~~~l 159 (405)
T TIGR00891 93 ACGFAP--GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRN--KASGLLISGYAVGAVVAAQVYSLV 159 (405)
T ss_pred HHHHhc--cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544 6777777889999999988888888877888888777 677777777777777776665544
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-06 Score=82.82 Aligned_cols=156 Identities=19% Similarity=0.077 Sum_probs=95.2
Q ss_pred HHHHHHHHHH-HHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCccc
Q 014880 38 ITAACWFTYL-LLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (416)
Q Consensus 38 ~~~~~~~~~l-~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~ 116 (416)
........++ |.|.++.|.++.+.+.+.....+...++.++.|++.||.+ |+..+....+.......+...
T Consensus 230 ~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~------- 301 (394)
T PRK10213 230 AGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLW------- 301 (394)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHH-------
Confidence 3333344555 5555556999999999999999999999999999999954 444233333222222222111
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 014880 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 196 (416)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~ 196 (416)
. .+.+..... ..+.+++++..++...+.+.+..+ +++++..+.......+|..+++.+++.+.+
T Consensus 302 -~-~~~~~~~~~----~~l~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~-------- 365 (394)
T PRK10213 302 -G-SDKIVATGV----AIIWGLTFALVPVGWSTWITRSLA--DQAEKAGSIQVAVIQLANTCGAAIGGYALD-------- 365 (394)
T ss_pred -h-hhHHHHHHH----HHHHHHHHHhhhHHHHHHHHHHCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 0 111212121 235677777777777766766553 445666666677778888888888877774
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 014880 197 DLENQYRWIAYSSIFIGCCFVGI 219 (416)
Q Consensus 197 ~~~~~~~~~~~~~~~i~~~~~~~ 219 (416)
..|++..+...+++..+..+.
T Consensus 366 --~~g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 366 --NIGLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred --ccChhhHHHHHHHHHHHHHHH
Confidence 345566666655444444433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-05 Score=78.20 Aligned_cols=171 Identities=13% Similarity=0.062 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHHhHHHHHHHHHHHhhCCccCccccccc
Q 014880 43 WFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (416)
Q Consensus 43 ~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr-~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (416)
+...+..|+++. |.+++.+..+...+.-..-+...+.|.++|+ +||+|. ++.+.++..++..++.....| ...
T Consensus 6 m~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~t-Il~~~ii~~lG~~llai~a~~----~~~ 80 (654)
T TIGR00926 6 MRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKT-ILYLSIVYVVGHALLSFGAIP----SSG 80 (654)
T ss_pred cHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHhccCc----ccc
Confidence 345566677665 9999999999888888888899999999997 799887 556666666665444321112 111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcc--chhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCch
Q 014880 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST--SRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL 198 (416)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~ 198 (416)
........+ +...+..+|.+..-....+...|...+.+ +|.+...+.+.+.++|++++..+.+.+-...+.. +.
T Consensus 81 ~~~~~~~~l-~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~f---g~ 156 (654)
T TIGR00926 81 HPLHDLLDL-LGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCF---GC 156 (654)
T ss_pred cchHHHHHH-HHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cc
Confidence 111111111 11224556777777777888888764322 3556677777778888777766665554322100 02
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 014880 199 ENQYRWIAYSSIFIGCCFVGIFLS 222 (416)
Q Consensus 199 ~~~~~~~~~~~~~i~~~~~~~~~~ 222 (416)
..+|+..|.+.++..++..++...
T Consensus 157 ~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 157 QDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHH
Confidence 357999988887777666655443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.6e-07 Score=90.96 Aligned_cols=123 Identities=11% Similarity=0.066 Sum_probs=92.9
Q ss_pred HHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 014880 272 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAI 350 (416)
Q Consensus 272 ~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (416)
.....+.++++.+..+.+++.++..++.+++.++.|++ ++++|| +.++++.++..++.++..+.+ +.+.+++..+
T Consensus 188 ~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR--~~lii~lil~~i~~ll~afa~--s~~~llv~R~ 263 (742)
T TIGR01299 188 FVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRK--QCLLICLSVNGFFAFFSSFVQ--GYGFFLFCRL 263 (742)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence 34445566789998888888888888999999998876 555555 677777666666655555544 6677777889
Q ss_pred HHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHH
Q 014880 351 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVL 400 (416)
Q Consensus 351 l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~ 400 (416)
+.|++.+...+....+..+..|++.+| ...+..+....+|..+++.+.
T Consensus 264 l~G~g~g~~~p~~~~~isE~~p~~~Rg--~~~g~~~~~~~iG~ila~~la 311 (742)
T TIGR01299 264 LSGFGIGGAIPIVFSYFAEFLAQEKRG--EHLSWLCMFWMIGGIYAAAMA 311 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999989988888 677777767777766666544
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2e-06 Score=81.82 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHH
Q 014880 41 ACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG 94 (416)
Q Consensus 41 ~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll 94 (416)
.....+.|.++.+. |.++.+.|....+..+...++.++.|++.||+||||.+.+
T Consensus 211 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~ 265 (377)
T PRK11102 211 FSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRF 265 (377)
T ss_pred HHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 33344556677775 9999999999999999999999999999999999987443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.3e-07 Score=85.55 Aligned_cols=148 Identities=12% Similarity=0.016 Sum_probs=89.2
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHH--HHHHHHHH
Q 014880 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGS--VLVAVSFS 105 (416)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~--~~~~~~~~ 105 (416)
..+..+...........+.|.|+++. |.++.+.+...+...+...++.++.|+++||.++||....... .....+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
T TIGR00881 221 ISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLL 300 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 33444444445555667889999876 9999999999999999999999999999998643332222111 11122221
Q ss_pred HhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHH
Q 014880 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185 (416)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~ 185 (416)
.... ....+........ ...+...........+...|..+ +++|++..++.+....+|..+++.+.+.
T Consensus 301 ~~~~-------~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 368 (379)
T TIGR00881 301 VYWL-------NPAANPLMDLICL----FALGFLVYGPQMLIGVIASELAP-KKAAGTAAGFVGFFAYLGGILAGLPLGY 368 (379)
T ss_pred HHhc-------CcchhHHHHHHHH----HHHHHHHhhhhHHHHHHHHHhcC-cchhHHHHHHHHHhhhhhhhhhhhhHHH
Confidence 2111 0111111111111 12332222222333455666654 6789999999999999999888877777
Q ss_pred HHH
Q 014880 186 VFS 188 (416)
Q Consensus 186 l~~ 188 (416)
+..
T Consensus 369 l~~ 371 (379)
T TIGR00881 369 LAD 371 (379)
T ss_pred HHH
Confidence 764
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.8e-07 Score=83.90 Aligned_cols=145 Identities=12% Similarity=0.119 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHH
Q 014880 252 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFC 330 (416)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~ 330 (416)
++...+.++...........+.|.++.+++|.++.+.+++.....++..++.++.|++ +|+++| +.+.++.++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~i~ 80 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR--YTTTLSLLLLAIP 80 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHHHH
Confidence 4455666666666677777888888889999999999999888888889999888876 555554 7777777777777
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHH----HHHHHHHHHHHHHHhh
Q 014880 331 GAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLS----FLDKMSCGIAVYVLQS 402 (416)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~----~~~~~g~~ig~~l~~~ 402 (416)
.....+.+ ++.+.+++..++.|++.+.. +....+..+..+++++| ...++.. ++..++..+++.+.+.
T Consensus 81 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~i~~~l~~~ 152 (366)
T TIGR00886 81 CLWAGLAV-QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQG--TALGLAAGWGNMGGGVAQFVMPPIIGS 152 (366)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhh--HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 65555443 15666666777888886544 34455666667777777 5666655 4444455555555543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-06 Score=84.60 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=95.3
Q ss_pred HHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 014880 272 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAI 350 (416)
Q Consensus 272 ~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (416)
+....+++++|.+..+.+++.+...++..++.+..|++ +|+++| +.+..+.++..++.....+.+ +.+.+++.-+
T Consensus 29 ~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r--~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~ 104 (412)
T TIGR02332 29 FAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGAR--RWIAGIMVLWGIASTATMFAT--GPESLYLLRI 104 (412)
T ss_pred HHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHH
Confidence 33447888999999999999998888888888888776 555555 777777777777766655543 6677777788
Q ss_pred HHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 351 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 351 l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
+.|++.+...+....+..+..|++++| ...++.+....+|..+++.+.+.+
T Consensus 105 l~G~~~~~~~~~~~~~~~~~~~~~~rg--~~~~~~~~~~~~g~~~~~~~~~~l 155 (412)
T TIGR02332 105 LVGIAEAGFLPGILLYLTFWFPAYFRA--RANALFMIAMPVTMALGLILSGYI 155 (412)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888877788888888777 677777777666666666655443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-06 Score=82.55 Aligned_cols=128 Identities=9% Similarity=-0.019 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccc
Q 014880 43 WFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST 121 (416)
Q Consensus 43 ~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (416)
....++.|.++. |.++.+.|.+.....+...+++++.|++.||+++|+. +..+... ........ ...+
T Consensus 224 ~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~-~~~g~~~-~~~~~~~~---------~~~~ 292 (393)
T PRK11195 224 LRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRV-LPAGILM-GLVVLLMA---------LQHS 292 (393)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch-HHHHHHH-HHHHHHHH---------HHhH
Confidence 334566777776 9999999999999999999999999999999998876 4444332 22221111 0111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccc-hhHHHhHHHHHHHHHHHHHHHHHHHH
Q 014880 122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS-RVVLTSCRNAFTMVANLSLYAIAFIV 186 (416)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-r~~~~~~~~~~~~~g~~l~~~~~~~l 186 (416)
.+.... ...+.+++.+...++..+.+.+.. +++. +++..+..+...+++..++..+...+
T Consensus 293 ~~~~~~----~~~~~G~~~g~~~~~~~~~~q~~~-~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 293 LLPAYP----LLILIGALGGFFVVPMNALLQHRG-HVLVGAGHSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred HHHHHH----HHHHHHHhhhhhhhhHHHHHHhhC-cccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 121111 112566666777777777776654 3333 78898899999999988887776544
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.3e-07 Score=84.83 Aligned_cols=126 Identities=7% Similarity=0.052 Sum_probs=91.6
Q ss_pred HHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 014880 272 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAI 350 (416)
Q Consensus 272 ~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (416)
+...++.+++|.+..+.+.+.....++..++.++.+++ +|+++| +.+..+..+..++.......+ +.+.+++..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 113 (398)
T TIGR00895 38 FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRK--RVLLWSILLFSVFTLLCALAT--NVTQLLILRF 113 (398)
T ss_pred hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHcc--chHHHHHHHH
Confidence 34445556789998888888888888888888888776 455544 677777766666655555443 6666677778
Q ss_pred HHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 351 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 351 l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
+.|++.+...+...++..+..|+++++ ...++.+....+|..+++.+.+.+
T Consensus 114 ~~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~l 164 (398)
T TIGR00895 114 LAGLGLGGLMPNLNALVSEYAPKRFRG--TAVGLMFCGYPIGAAVGGFLAGWL 164 (398)
T ss_pred HHhcccccchhhHHHHHHHHcCHHhhc--hhHhhHhhHHHHHHHHHHHHHHHH
Confidence 899999888888888888888877777 677777777777777776665544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-06 Score=83.85 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHH
Q 014880 252 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFC 330 (416)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~ 330 (416)
+..++..++...+.........|.+ ++++|.+..+.+.+.+...++..++++..+++ +|+++| +.+..+..+.+++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r--~~~~~g~~l~~~g 81 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYK--AGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHHHH
Confidence 3444555555555555545666655 77889999999999999989999999888776 455554 8888888887777
Q ss_pred HHHHhhcC-CchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 331 GAGILILP-MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 331 ~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
..+..... .++.+.+.+..++.|+|.+...+....+..+..++++++ ...+..+....+|..+++.+...+
T Consensus 82 ~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lG~~~g~~i~~~l 153 (410)
T TIGR00885 82 AFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTAT--RRLNLAQSFNPFGSIIGMVVAQQL 153 (410)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65543332 246667777788999999998877777766666666655 445555555555555555554433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.5e-06 Score=82.28 Aligned_cols=148 Identities=11% Similarity=0.071 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHH
Q 014880 248 KKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVL 326 (416)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~ 326 (416)
.+|.++...+....+...+.......+..-.+++|++.++.++..++..++..+..+..|++ +|++. |+++.++..+
T Consensus 32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~--R~v~~~~~ll 109 (462)
T PRK15034 32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGG--RRWTVFSTAI 109 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--hHHHHHHHHH
Confidence 34555554555555545555545544555555799999999988888777777777776665 44444 4777777777
Q ss_pred HHHHHHHHhhc---CCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHH----HHHHHHHHHHHHHH
Q 014880 327 WVFCGAGILIL---PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTL----SFLDKMSCGIAVYV 399 (416)
Q Consensus 327 ~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~----~~~~~~g~~ig~~l 399 (416)
..+......+. ..++.+.+++..++.|++ +..++.....+....|++++| .+.|+. +++..+++.+++.+
T Consensus 110 ~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG--~A~Gi~~g~G~~G~~l~~~l~p~~ 186 (462)
T PRK15034 110 LIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQG--SALGINGGLGNLGVSVMQLVAPLV 186 (462)
T ss_pred HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhH--HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666655543 124777888888999998 666777777777788999999 777776 44444555555554
Q ss_pred H
Q 014880 400 L 400 (416)
Q Consensus 400 ~ 400 (416)
+
T Consensus 187 i 187 (462)
T PRK15034 187 I 187 (462)
T ss_pred H
Confidence 4
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00011 Score=69.15 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=58.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhccchhhh
Q 014880 340 NMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSKLCRL 410 (416)
Q Consensus 340 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~ 410 (416)
++.|.+++..+..|+.-|..+.+....+.+..+++++- +..|..+.+..+|..+++.+.-.+.+.+|+.
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~RE--Fslg~vsvsds~GI~lAgll~l~le~~LC~~ 401 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDRE--FSLGAVSVSDSLGILLAGLLGLPLEPWLCSH 401 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC
Confidence 37788888888889999998888887777666666666 8889999999999999999999999999874
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=83.65 Aligned_cols=137 Identities=11% Similarity=0.077 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC
Q 014880 260 MLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP 338 (416)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 338 (416)
+............+|. +.+++|.++.+.+++.....++..++.++.|++ ||+++| +.+..+.++..++.......+
T Consensus 15 ~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r--~~~~~~~~~~~~~~~~~~~~~ 91 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRR--PVLLLGLFIFALSSLGLALSN 91 (385)
T ss_pred HHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh--HHHHHHHHHHHHHHHHHHHHc
Confidence 3333344444444554 456789999999999888888888888888776 455544 777777777676666555543
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 339 MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 339 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
+.+.+++..++.|++.+...+...++..+..|+++++ ...+..+....+|..+++.+.+.+
T Consensus 92 --~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~~~~~l 152 (385)
T TIGR00710 92 --NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELS--RIYSILMPVLALAPAVAPLLGGYI 152 (385)
T ss_pred --cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777788999999988888888888888877777 666766666666665555554433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-06 Score=93.25 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHh-CCChH-HHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCc
Q 014880 37 DITAACWFTYLLLFLTDI-GLSPR-GAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC 114 (416)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~-g~s~~-~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~ 114 (416)
.........++|.|+.+. |.+.. +.|++.+...+...+++++.|+++||+++|+. +..+.+...++.+++..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~-~~~~~~~~~~~~~~~~~----- 318 (1146)
T PRK08633 245 WFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGL-VPLGALGLALSLFLLPT----- 318 (1146)
T ss_pred HHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccc-hhHHHHHHHHHHHHHHH-----
Confidence 334445556788888775 99999 99999999999999999999999999998876 44444444444333221
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHH
Q 014880 115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (416)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l 186 (416)
. .+.+...+. ..+++++.+...++..+++.+..+ +++|++..+..+....+|.+++..++..+
T Consensus 319 --~--~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~p-~~~rg~~~~~~~~~~~lg~~~~~~~~~~l 381 (1146)
T PRK08633 319 --A--PSLASVLVL----FFLFGFSAGLFIVPLNALIQFRAP-EKELGKVLAANNFLQNVGMLLFLALTTLF 381 (1146)
T ss_pred --h--hhHHHHHHH----HHHHHHHHHHhhHHHHHHHhhcCC-ccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111212121 225666667777777787777764 67899999998888888887666555444
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-06 Score=83.93 Aligned_cols=179 Identities=15% Similarity=0.068 Sum_probs=108.5
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCC--------chhhHHhH
Q 014880 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGH--------FKIWHGAG 96 (416)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Gr--------rk~~ll~~ 96 (416)
.++..+.++..+.....+..++|.|++|. |.+..+.|++.++..+...+...+.|.++||.-+ ||.+-.++
T Consensus 260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~ 339 (466)
T KOG2532|consen 260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIA 339 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHH
Confidence 37788888999999999999999999997 9999999999999999999999999999998633 34332333
Q ss_pred HHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHH
Q 014880 97 SVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN 176 (416)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~ 176 (416)
...-++.+..+. . .+..+.......+.+.....+...++...... |.+ ++.-+...+..+....+..
T Consensus 340 ~~~~ai~l~~l~--~-----~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~----~~a--pq~a~~l~g~~~~~~~~~~ 406 (466)
T KOG2532|consen 340 FGGPAVFLLVLA--F-----TSDEHRLLAVILLTIAIGLSGFNISGFYKNHQ----DIA--PQHAGFVMGIINFVGALAG 406 (466)
T ss_pred HHHHHHHHHeee--e-----cCCCcchHHHHHHHHHHHHcccchhhhHhhhh----hcc--chHHHHHHHHHHHHHHHHH
Confidence 332222222211 1 11112222333333221222222222211111 111 3344555666666666555
Q ss_pred HHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 014880 177 LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRT 224 (416)
Q Consensus 177 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 224 (416)
++++.+ ++.+..+ +....|++.|.+.+++.++..++..++-
T Consensus 407 ~~~P~~----vg~~~~~---~t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 407 FIAPLL----VGIIVTD---NTREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHh----eeeEeCC---CCHHHHHHHHHHHHHHHHHhchheeEee
Confidence 554444 3443321 1467999999999888877776655543
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.0002 Score=68.51 Aligned_cols=310 Identities=11% Similarity=0.003 Sum_probs=156.2
Q ss_pred HHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 014880 65 MLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQ 144 (416)
Q Consensus 65 ~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (416)
..+-.....++..+.+.+.|+.|.|.. +..+...+..--...+. | +.... .+...+.|+|.+..+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~-lv~ga~~y~~f~~gfl~---~-------N~y~~----yfssallG~Gaallw 120 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWA-LVIGATCYAAFPLGFLF---P-------NSYYL----YFSSALLGFGAALLW 120 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHH-HHHHhHHHHHHHHHHHh---c-------chHHH----HHHHHHhhhhHHhee
Confidence 444445566778899999999999765 66666555444322221 1 11211 122347888888888
Q ss_pred hhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHH--------H---HHHHHHHHH
Q 014880 145 VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR--------W---IAYSSIFIG 213 (416)
Q Consensus 145 ~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~--------~---~~~~~~~i~ 213 (416)
........+..+ ++++.+..+...+....+.++++.....+...-...+. ...+.+ . ...+.+++.
T Consensus 121 ~GqG~ylt~~st-~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~v~~ 197 (461)
T KOG3098|consen 121 TGQGGYLTSNST-RETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAI--ITDGTRRLVFEVLFIDFEIKVLFGVLL 197 (461)
T ss_pred cccceehhhcCC-hhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccc--cccchhhhhcchhhhhHHHHHHHHHHH
Confidence 888888887764 56677777877777777766655443222222111111 111111 0 111111111
Q ss_pred HHHHHHHHhhccCc--cccccccCC-CchHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccch
Q 014880 214 CCFVGIFLSRTEEP--RLKMGLRGN-SHARISW---AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND--LRMGQ 285 (416)
Q Consensus 214 ~~~~~~~~~~~~e~--~~~~~~~~~-~~~~~~~---~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~g~~~ 285 (416)
.+..+-..-..+++ +...++++. ....+.+ -+++++++...+....+..+.........+|..+.-. .+.+.
T Consensus 198 ~~~~l~~i~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~ 277 (461)
T KOG3098|consen 198 AISVLSIINFDFLPSKDVVNCKSSSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNT 277 (461)
T ss_pred HHHHHHhhheeecCccchhhhhhhccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcc
Confidence 11111111111121 111111111 1222222 3456677766555555555555555566777665433 22222
Q ss_pred h-hhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHh-hcCCc---------------hhHHHH
Q 014880 286 S-AKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGIL-ILPMN---------------MSAFMY 346 (416)
Q Consensus 286 ~-~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~-~~~~~---------------~~~~~~ 346 (416)
. ..++.....+++..+++...+.++|..||+ ++.+.++..+..+...+.. -.|.+ ......
T Consensus 278 ~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ 357 (461)
T KOG3098|consen 278 TYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLAL 357 (461)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHH
Confidence 2 233444444555555555555554444444 3455555544333333322 22211 244666
Q ss_pred HHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHH
Q 014880 347 VLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGI 395 (416)
Q Consensus 347 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~i 395 (416)
+..++.|++-...+...........++|+.- +.++..+-+.++..+
T Consensus 358 ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~---~fsi~kfyq~~~s~v 403 (461)
T KOG3098|consen 358 IIGFLLGFGDACFNTQRYVIIALLYPDDRAQ---AFSLFKFYQSVASCV 403 (461)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCchHH---HHHHHHHHHHHHHHH
Confidence 7778999999998888887777777555553 445544544444443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.9e-06 Score=81.86 Aligned_cols=143 Identities=14% Similarity=0.081 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccc
Q 014880 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (416)
Q Consensus 38 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~ 117 (416)
..........+.|.+..--++...+.+.....+...+..|+.++++||+||||.+.. +.+..++....++. .
T Consensus 243 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~-~~~~~~~~~~~~~~-------~ 314 (444)
T PRK09669 243 TAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKW-TIVAFVILSALIFF-------I 314 (444)
T ss_pred HHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHH-------h
Confidence 333333333333334432233344556666677777888999999999999987543 34333322222221 1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcc------chhHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014880 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST------SRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191 (416)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~ 191 (416)
+..+..... +...+.+++.+...+...++++|..+..| +.+...+.......+|..+++.+.+.+....+
T Consensus 315 ~~~~~~~~~----~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 315 PPSNVWLIF----ALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred CcchHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 112222111 12236777888887888888888764211 23445677778888999999988888888766
Q ss_pred c
Q 014880 192 A 192 (416)
Q Consensus 192 ~ 192 (416)
.
T Consensus 391 y 391 (444)
T PRK09669 391 Y 391 (444)
T ss_pred C
Confidence 5
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.4e-06 Score=76.65 Aligned_cols=145 Identities=9% Similarity=-0.074 Sum_probs=87.2
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHH
Q 014880 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI---GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (416)
Q Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~---g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~ 101 (416)
+.+...+..+...........+++.|++|. |+++.+.+...+.+.....++..+.++++||+|+||. +..+.....
T Consensus 141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~-l~~~~~l~~ 219 (310)
T TIGR01272 141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY-LAFNAFLAV 219 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHHHHH
Confidence 333333444444445556678899999863 8999999999999999999999999999999999887 445544444
Q ss_pred HHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHH
Q 014880 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (416)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~ 181 (416)
+...+... .+ . ........ +.+.+.+...+...+...+..+ ++.+...++. ....+|..+.+.
T Consensus 220 ~~~~l~~~-------~~--~-~~~~~~~~----l~g~~~s~i~P~~~s~a~~~~~--~~~~~asai~-~~~~~Gg~i~P~ 282 (310)
T TIGR01272 220 LLSIGAAL-------TH--G-YVAMWFVL----ALGLFNSIMFPTIFSLALNALG--RHTSQGSGIL-CLAIVGGAIVPL 282 (310)
T ss_pred HHHHHHHH-------cC--C-HHHHHHHH----HHHHHHHHHHHHHHHHHHhhhh--hhhhhhHHHH-HHHHhcchHHHH
Confidence 44333221 11 1 11111111 3455555555555555554432 3334445543 445566666555
Q ss_pred HHHHHH
Q 014880 182 IAFIVF 187 (416)
Q Consensus 182 ~~~~l~ 187 (416)
+.+.+.
T Consensus 283 l~G~la 288 (310)
T TIGR01272 283 LQGSLA 288 (310)
T ss_pred HHHHHH
Confidence 544444
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.8e-06 Score=81.66 Aligned_cols=142 Identities=14% Similarity=0.134 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHH
Q 014880 253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG 331 (416)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~ 331 (416)
..+.+.++...+.........|.+ ++++|.++.+.+.......++..++++..|++ +|+++| +.+..+..+.+++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r--~~l~~g~~~~~~~~ 105 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK--AGIITGLFLYALGA 105 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHH
Confidence 344455555555566666677766 78899999999999999999999999988876 555554 88888888877776
Q ss_pred HHHhh-cCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHH
Q 014880 332 AGILI-LPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYV 399 (416)
Q Consensus 332 ~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l 399 (416)
.+... ...++.+.+++..++.|++.+...+....+..+..++++.+ ...+..+....+|..+++.+
T Consensus 106 ~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~--~~~s~~~~~~~~G~~~g~~~ 172 (438)
T PRK10133 106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH--FRLNLAQTFNSFGAIIAVVF 172 (438)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHH--HHHHHHHHHHHHHHHHHHHH
Confidence 55421 22347777778889999999998887777766544444333 23444444455555555444
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-05 Score=79.69 Aligned_cols=156 Identities=12% Similarity=0.035 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcc
Q 014880 37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (416)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~ 115 (416)
++........+|.+.++. |.++...|++.++..+...++..+.+++.+|+++++. +..+.+..+++...+..
T Consensus 231 ~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~l-v~~~~~~~a~~~~~lal------ 303 (524)
T PF05977_consen 231 NLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRL-VLLASLLFALALLLLAL------ 303 (524)
T ss_pred HHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchh-hHHHHHHHHHHHHHHhc------
Confidence 334444556688888776 9999999999999999999999999999999988776 55555555555433321
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 014880 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 195 (416)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~ 195 (416)
..+.+...... .+.|.++...+....+.+-...| ++.|||..++.+.....+..++..+.+.+...
T Consensus 304 ---~~~~~~~~~~l----~l~G~~~~~~~~~~~t~~Q~~~P-~~~~GRv~si~~~~~~g~~~lGsll~G~la~~------ 369 (524)
T PF05977_consen 304 ---SPSFWLALIAL----FLAGAAWIIANSSLNTLVQLSVP-DWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH------ 369 (524)
T ss_pred ---chHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCC-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 11222222222 25666777777776666665554 67899999999888888888888777777744
Q ss_pred CchhhHHHHHHHHHHHHHHHHH
Q 014880 196 ADLENQYRWIAYSSIFIGCCFV 217 (416)
Q Consensus 196 ~~~~~~~~~~~~~~~~i~~~~~ 217 (416)
.|.+..+.+.++..++..
T Consensus 370 ----~g~~~al~~a~~~lll~~ 387 (524)
T PF05977_consen 370 ----FGVRTALLIAGAALLLSA 387 (524)
T ss_pred ----hCHHHHHHHHHHHHHHHH
Confidence 445666655554433333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.3e-06 Score=80.40 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHH--HHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCc
Q 014880 264 LVVNVSQAYLAFY--VINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMN 340 (416)
Q Consensus 264 ~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (416)
........+.|.+ +.+++|.++.+.+....+..++..++.++.|++ +|+++| +.+..+..+..++.....+.+
T Consensus 17 ~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~~~~~~~~~~~-- 92 (401)
T PRK11043 17 LGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRK--PVLLAGLSLFALGSLGMLWVE-- 92 (401)
T ss_pred HHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCc--HHHHHHHHHHHHHHHHHHHhc--
Confidence 3334445566655 567789999999999988888888899888876 455554 777777766666655554443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHH----HHHHHHHHHHhhh
Q 014880 341 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDK----MSCGIAVYVLQSY 403 (416)
Q Consensus 341 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~----~g~~ig~~l~~~~ 403 (416)
+.+.+++..++.|++.+...+.......+..++++.+ ...+..+.... +|..+++.+.+.+
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~i~~~l~~~~ 157 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKAN--RVFATIMPLVALSPALAPLLGAWLLNHF 157 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6666667778888887766655555666666666554 34444443344 4444455554443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-05 Score=78.33 Aligned_cols=144 Identities=10% Similarity=-0.014 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCccc
Q 014880 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (416)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~ 116 (416)
.+..........+|.+...-++...+.+..++.+...++.++.++++||+|||+.+...............+. |
T Consensus 241 ~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~---~--- 314 (460)
T PRK11462 241 ILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV---P--- 314 (460)
T ss_pred HHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---c---
Confidence 3333444444455555542233455667778888888899999999999999887443333322223222221 1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCc----cch--hHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 014880 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS----TSR--VVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (416)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~----~~r--~~~~~~~~~~~~~g~~l~~~~~~~l~~~~ 190 (416)
..+....... ..+.+++.+.......++.+|..+.. .+| +...+.......+|..+++.+.+.++...
T Consensus 315 --~~~~~~~~~~----~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~ 388 (460)
T PRK11462 315 --MQASITMFVF----IFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG 388 (460)
T ss_pred --hhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1111111111 12345555555555566777654321 122 33345556778888888888888887765
Q ss_pred cc
Q 014880 191 TA 192 (416)
Q Consensus 191 ~~ 192 (416)
+.
T Consensus 389 Gy 390 (460)
T PRK11462 389 GY 390 (460)
T ss_pred CC
Confidence 43
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.49 E-value=3e-06 Score=81.38 Aligned_cols=149 Identities=9% Similarity=-0.002 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHH
Q 014880 249 KILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLW 327 (416)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~ 327 (416)
||.++.+...+++..........++|.|+.+++|.++.+.+.+..+..+...++.++.|++ ||++|| +.+..+....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr--~~~~~~~~~~ 78 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLK--KHLLWIISGL 78 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--HHHHHHHHHH
Confidence 5777888888888888888888999999999999999999999999999999999988876 555554 5555444333
Q ss_pred HHHHHHH---hhcCC--ch-hHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHH
Q 014880 328 VFCGAGI---LILPM--NM-SAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYV 399 (416)
Q Consensus 328 ~~~~~~~---~~~~~--~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l 399 (416)
++....+ ...+. .+ .....+..++.+++.+...+...++..+..+++....|......+++..+|..+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l 156 (396)
T TIGR00882 79 LVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGIL 156 (396)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhh
Confidence 3322221 11110 01 1222333455666666655555555433222221111133333344444455554444
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=9e-06 Score=80.00 Aligned_cols=154 Identities=10% Similarity=0.052 Sum_probs=93.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhC
Q 014880 30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (416)
Q Consensus 30 ~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~ 109 (416)
....+..+........+.+.|.+...-++...+.+..+..+...++.|++++++||+||||.++ .+....+++....+.
T Consensus 237 l~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~-~~~~~~~~~~~~~~~ 315 (473)
T PRK10429 237 LGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWA-GASIFPVLSCGVLLL 315 (473)
T ss_pred HHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH-HHHHHHHHHHHHHHH
Confidence 3334444444455555555444444335667777777777888899999999999999998844 444443333222211
Q ss_pred CccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCc------cchhHHHhHHHHHHHHHHHHHHHHH
Q 014880 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS------TSRVVLTSCRNAFTMVANLSLYAIA 183 (416)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~~r~~~~~~~~~~~~~g~~l~~~~~ 183 (416)
. ......+.+.. .+...+.+++.+.......++++|..+.. ++.+...+.......+|..+++.+.
T Consensus 316 ---~-~~~~~~~~~~~----~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~ 387 (473)
T PRK10429 316 ---M-GLAAPHNALLI----VIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFI 387 (473)
T ss_pred ---H-hccCchhHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00011121211 12223566777777777788888875421 1224467888888889998888888
Q ss_pred HHHHHhccc
Q 014880 184 FIVFSVSTA 192 (416)
Q Consensus 184 ~~l~~~~~~ 192 (416)
+.+....+.
T Consensus 388 g~~l~~~Gy 396 (473)
T PRK10429 388 GVVLGLIGY 396 (473)
T ss_pred HHHHHHcCC
Confidence 888776654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.1e-06 Score=77.43 Aligned_cols=167 Identities=12% Similarity=-0.014 Sum_probs=93.6
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCC---chhhHHhHHHHH
Q 014880 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGH---FKIWHGAGSVLV 100 (416)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Gr---rk~~ll~~~~~~ 100 (416)
+..+......+.....+..+..++|.|+++.|.+.. .+....+..+...++ .|+++||..| |+.......+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~ 267 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLI 267 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHH
Confidence 344555556666677777778899999988788864 666666666655555 4677777654 343232222222
Q ss_pred HHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHH
Q 014880 101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY 180 (416)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~ 180 (416)
.+....... . .+...... .. .+.+...........++.+|..+ ++.|++..++.+....+|+..++
T Consensus 268 a~~~~~~~~-------~--~~~~~~~~-~~---~l~~~~~~~~~~~~~~~~~~~~p-~~~rgt~~G~~~~~g~~~~~~~~ 333 (368)
T TIGR00903 268 AAFFLALAF-------E--LNRLALFA-FI---GIAGLLMLPAYAIIMDWIGKFCD-KELHGKAAGAIGFTSRAISVALA 333 (368)
T ss_pred HHHHHHHHH-------c--cccHHHHH-HH---HHHHHhhhhhHHHHHHHHHHhcc-hhhcCcccchhhHHHHHHHHHHH
Confidence 222212110 0 11111111 11 12223333333335577778775 78899999999999999987777
Q ss_pred HHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHH
Q 014880 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF 220 (416)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 220 (416)
.+.+.+.. +.+..|.+.++..++..+..
T Consensus 334 ~~~~~~~~------------~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 334 LAAMLFIS------------SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred HHHHHHhc------------CHHHHHHHHHHHHHHHHHHH
Confidence 66655441 23444555555554444443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.6e-06 Score=79.96 Aligned_cols=126 Identities=13% Similarity=0.064 Sum_probs=84.7
Q ss_pred HHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHH
Q 014880 271 AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLA 349 (416)
Q Consensus 271 ~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (416)
..+|.+ .+++|.++.+.+.......++..++.++.|++ ||++|| +.+..+..+..++....... ++.+.+++..
T Consensus 29 p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr--~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~ 103 (394)
T PRK11652 29 PAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRR--PVILVGMSIFILGTLVALFA--HSLTVLIAAS 103 (394)
T ss_pred ccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh--HHHHHHHHHHHHHHHHHHHH--ccHHHHHHHH
Confidence 344444 46789999999988888888888888888776 455554 67777776666665554443 3666677777
Q ss_pred HHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 350 IFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 350 ~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
++.|++.+...+.......+..++++.+ .+.+..+.+..++..+++.+.+.+
T Consensus 104 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~i~~~l 155 (394)
T PRK11652 104 AIQGLGTGVGGVMARTLPRDLYEGTQLR--HANSLLNMGILVSPLLAPLIGGLL 155 (394)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889888776665555555555555555 566666666666665555554433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.5e-06 Score=90.01 Aligned_cols=155 Identities=10% Similarity=-0.027 Sum_probs=101.0
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHH
Q 014880 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (416)
Q Consensus 27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~ 105 (416)
+...++.+...+..+....++|.|+++. |.++.+.|++.+...++..+++++.|+++||.++++... .+.+...+..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~-~~~~~~~~~~~ 306 (1140)
T PRK06814 228 WLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVP-IGALLMGLFGL 306 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeeh-HHHHHHHHHHH
Confidence 3344444444555566667899999986 999999999999999999999999999999888766533 33333222221
Q ss_pred -HhhC--CccC-cc-------cccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHH
Q 014880 106 -SVFG--GCMP-CR-------ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV 174 (416)
Q Consensus 106 -~~~~--~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~ 174 (416)
+.+. ...+ .. +....+.+... +...+++++.+...++..+++.+.++ +++|+++.+..+....+
T Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~G~v~g~~~~~~~~ 381 (1140)
T PRK06814 307 DLAFASSSVPAEPAQLKSILVFLSKRHGWRIL----IDLFGLAAAGGLYIVPLFAALQAWAN-PAHRARVIAANNVLNAA 381 (1140)
T ss_pred HHHhcccccccccccccchhhhhcccccHHHH----HHHHHHHHHHHHhHHHHHHHHHhhCC-cccceeeeHHHHHHHHH
Confidence 2110 0000 00 00001111111 12235667777777888888888775 68899999999998888
Q ss_pred HHHHHHHHHHHHH
Q 014880 175 ANLSLYAIAFIVF 187 (416)
Q Consensus 175 g~~l~~~~~~~l~ 187 (416)
|..+++.+.+.+.
T Consensus 382 ~~~ig~~~~g~l~ 394 (1140)
T PRK06814 382 FMVAGTIILALLQ 394 (1140)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777766654
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-05 Score=79.85 Aligned_cols=153 Identities=12% Similarity=-0.030 Sum_probs=86.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHH
Q 014880 48 LLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETI 127 (416)
Q Consensus 48 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (416)
+.+..+.+.+...... ...+....+.++.++++||+|||+. +..+.+...++.+.+.. .+ .........
T Consensus 347 ~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~l~dr~grr~~-~~~~~~~~~~~~l~~~~--~~-----~~~~~~~~~ 415 (505)
T TIGR00898 347 VLDLGNLGGNIYLDLF---ISGLVELPAKLITLLLIDRLGRRYT-MAASLLLAGVALLLLLF--VP-----VDLYFLRTA 415 (505)
T ss_pred hccccccCCChHHHHH---HHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHH--cC-----CCchHHHHH
Confidence 3333444555443333 3445666778899999999999887 44544444444333221 11 111111111
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHH
Q 014880 128 SYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAY 207 (416)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 207 (416)
... +.+.+.+.......++.+|..+ ++.|++..++.+....+|.++++.+.. +. ..++..++.
T Consensus 416 ~~~----~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-----------~~~~~~~~~ 478 (505)
T TIGR00898 416 LAV----LGKFGITSAFQMVYLYTAELYP-TVVRNLGVGVCSTMARVGSIISPFLVY-LG-----------EKWLFLPLV 478 (505)
T ss_pred HHH----HHHHHHHHHHHHHHHHhccccc-HHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-----------HHHHhhHHH
Confidence 111 2223333333444566777775 677999999988888888887766554 21 345566677
Q ss_pred HHHHHHHHHHHHHHhhccCccc
Q 014880 208 SSIFIGCCFVGIFLSRTEEPRL 229 (416)
Q Consensus 208 ~~~~i~~~~~~~~~~~~~e~~~ 229 (416)
+.+...++..+.. ...||++.
T Consensus 479 ~~~~~~~~~~~~~-~~lpet~~ 499 (505)
T TIGR00898 479 LFGGLALLAGILT-LFLPETKG 499 (505)
T ss_pred HHHHHHHHHHHHH-HcCcCCCC
Confidence 7666666665544 34566543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-05 Score=77.25 Aligned_cols=126 Identities=11% Similarity=0.053 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhhcccchhh-hhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcCCchhHHH
Q 014880 269 SQAYLAFYVINDLRMGQSA-KALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFM 345 (416)
Q Consensus 269 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (416)
...+...++.+++|++..+ .+.+......+..+..+..|++ .||. |+++.++.+...+...+..+.. +...+
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlL---aDrlG~K~vL~l~~l~Wsl~t~L~~fa~--Sl~~L 118 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLL---TDYLRYKPVLVLQALSFVCVWLLLLLGT--SVWHM 118 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHH---HHHhCchHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 3456667888899999998 8888888888888888887776 5555 5888888888887777666654 67777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhh
Q 014880 346 YVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (416)
Q Consensus 346 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~ 402 (416)
.+.-++.|++.+... ....++...+|+++++ .+.|..+.+..+|..+++.+.+.
T Consensus 119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~--ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQ--RAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999988 7777888888888888 88899999999999998888776
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.5e-06 Score=79.60 Aligned_cols=133 Identities=11% Similarity=0.036 Sum_probs=86.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH-HHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhh
Q 014880 30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQ-IADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (416)
Q Consensus 30 ~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~-~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~ 108 (416)
.+..+......+....++|.|+++.|.++.+.|.+..+.. +...++.++.|+++||+||||. +..+.+...+...+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~-l~~~~~~~~~~~~~~~ 293 (356)
T TIGR00901 215 LLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYA-LLLFGIVQALTNAGFV 293 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHH
Confidence 3334444555566778889999888999999998887655 5667889999999999999887 4444444444433221
Q ss_pred CCccCccccccc------chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHH
Q 014880 109 GGCMPCRILSTS------TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT 172 (416)
Q Consensus 109 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~ 172 (416)
. .+ .... +..+. ......+.+++.+..+++..++..+..+ +++|++..++.+...
T Consensus 294 ~--~~---~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 294 W--LA---SNGHHDGITFPHLLM---LFLTITLEAVTGGLGTVAFVAFLSKLSN-PKFGATQMALLSSLS 354 (356)
T ss_pred H--HH---hcCcccccccchHHH---HHHHHHHHHHHhHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHH
Confidence 0 00 0000 11111 1111234567777888888999999885 788999888766543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-05 Score=77.23 Aligned_cols=141 Identities=10% Similarity=0.072 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHH
Q 014880 254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA 332 (416)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~ 332 (416)
...+..+............+|.+. +++|.+..+.++......++..++.++.|++ ||+++| +.+..+.++..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lp~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r--~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVGLPRIA-ADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK--PVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh--HHHHHHHHHHHHHHH
Confidence 334444555455555556666654 5579999888888888888888888888776 555544 777777777666665
Q ss_pred HHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHh
Q 014880 333 GILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (416)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~ 401 (416)
.....+ +.+..++..++.|++.+...+...++..+..++++++ ...+..+....++..+++.+..
T Consensus 84 ~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~i~~~~~~~i~~ 148 (392)
T PRK10473 84 LCSLAE--TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRA--KVLSLLNGITCIIPVLAPVLGH 148 (392)
T ss_pred HHHHhC--cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 555443 5556666778889988887777777777777777776 5556555555555555544433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2e-05 Score=75.29 Aligned_cols=169 Identities=14% Similarity=0.063 Sum_probs=107.6
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHh
Q 014880 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (416)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~ 107 (416)
.....+..............+|.+.. |-++.+.............++.+++.++++|+||||.+. .+.++.+++....
T Consensus 241 ~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~-~~~~~~~i~~~~~ 319 (467)
T COG2211 241 LLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFL-IGLLLLAVGYLLL 319 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHH-HHHHHHHHHHHHH
Confidence 33344444444455555566666655 888888888888888888888999999999999999855 4555555555454
Q ss_pred hCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcc------chhHHHhHHHHHHHHHHHHHHH
Q 014880 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST------SRVVLTSCRNAFTMVANLSLYA 181 (416)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------~r~~~~~~~~~~~~~g~~l~~~ 181 (416)
+. .+..+.. ..+.. .++.+++.+..+.-.+++++|.....| .-|...+......-+|..++..
T Consensus 320 ~f-------~~~~~~~-l~~~~---~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~ 388 (467)
T COG2211 320 YF-------TPAGSVV-LIVVA---LIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGF 388 (467)
T ss_pred Hh-------hcCcchH-HHHHH---HHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 42 1222222 22222 236778888888888899998753222 1244566677778888888888
Q ss_pred HHHHHHHhccccccC--c---hhhHHHHHHHHH
Q 014880 182 IAFIVFSVSTAKTHA--D---LENQYRWIAYSS 209 (416)
Q Consensus 182 ~~~~l~~~~~~~~~~--~---~~~~~~~~~~~~ 209 (416)
+.+++....+..... + ...|.+..+.+.
T Consensus 389 ~~g~~L~~~Gyv~~~~~Q~~~al~gI~~~~~~~ 421 (467)
T COG2211 389 IPGWILGAIGYVPNVSAQSASALFGIRFLFIIL 421 (467)
T ss_pred HHHHHHHHcCCCCCcccCCHHHHHHHHHHHHHH
Confidence 888888777654322 1 223555555544
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=4e-05 Score=67.67 Aligned_cols=127 Identities=18% Similarity=0.213 Sum_probs=79.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhh
Q 014880 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV 124 (416)
Q Consensus 45 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (416)
.|-|...+++|+|.+|...+.....+...+ .++.|.+.||+|++.. +.+|.....+++.+.+.. +. .-.+. .+.+
T Consensus 23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~-l~iG~~~~~~GY~~~~l~-~~-~~i~~-~~~~ 97 (250)
T PF06813_consen 23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVV-LLIGAVLGFVGYGLLWLA-VS-GRIPS-LPVW 97 (250)
T ss_pred hhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHHH-Hh-CccCc-cchH
Confidence 444544445599999999999999998876 6899999999999765 778888888887666531 11 11111 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHH
Q 014880 125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (416)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~ 181 (416)
....+.. +.+.+.+..+++.. +..+..-|++||++.++......+++.+-..
T Consensus 98 ~~~~~~~---l~~~s~~~~~ta~l--vt~~~NFP~~RG~vvgilk~~~GLSaai~t~ 149 (250)
T PF06813_consen 98 LMCLFLF---LGGNSSCWFNTASL--VTCVRNFPRSRGTVVGILKGFFGLSAAIFTQ 149 (250)
T ss_pred HHHHHHH---HHcccHHHhhhHHH--HHHHHhCccccCceehhhhHHHHhHHHHHHH
Confidence 4333332 22233333333322 2211222578999999998888888766443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00013 Score=69.00 Aligned_cols=181 Identities=9% Similarity=0.033 Sum_probs=109.3
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHHHh----CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHH
Q 014880 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV 98 (416)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~----g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~ 98 (416)
.++.+.+.+--.+....+....-..+.|+++. +.++...|.+.++..+..++.--+..++.+|+|.|+.++ .+..
T Consensus 219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Ll-lag~ 297 (412)
T PF01306_consen 219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLL-LAGV 297 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHH-HHHH
Confidence 44444444444444445555544567777764 556678999999999999999999999999999999844 4444
Q ss_pred HHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHH-HHHHHHHHH
Q 014880 99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANL 177 (416)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~-~~~~~~g~~ 177 (416)
...+=...... ..++++.. ++..+-++.++...++..-++.+.. |++...+...+. +....+|..
T Consensus 298 i~~iRi~~~~~---------~~~~~~i~----~~klLH~~e~~l~lva~fkYI~~~f-d~rlsAt~y~v~~~~~~~~~~~ 363 (412)
T PF01306_consen 298 IMAIRIIGSGF---------ATNPWVIS----LIKLLHALEFPLLLVAAFKYITAHF-DKRLSATLYLVGFQFAKQIGII 363 (412)
T ss_dssp HHHHHHHHHHT-----------SHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHS--GGGHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHhh---------hcchHHHH----HHHHHHHHHHHHHHHHHHHHHHHhC-CHhHHHHHHHHHHHHHHHHHHH
Confidence 45555444321 11222222 2223455666666666666666654 233333443332 334445555
Q ss_pred HHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 014880 178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (416)
Q Consensus 178 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~ 228 (416)
+.+.+.+.+. +..|++..+++++.+.++..++..+..++++
T Consensus 364 i~s~~~G~ly----------d~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 364 ILSPLAGYLY----------DRIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHhhhHHhhH----------hhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 5444444444 5778999999999998888888888776533
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.1e-05 Score=70.18 Aligned_cols=136 Identities=12% Similarity=0.119 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccc
Q 014880 41 ACWFTYLLLFLT-DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST 119 (416)
Q Consensus 41 ~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (416)
+.....-..|-. ++|++.+++.++....++..+++..+.|++.||+|.|++.+....+....+...++. ..
T Consensus 269 ~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~-------~~- 340 (438)
T COG2270 269 NTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL-------EG- 340 (438)
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc-------cc-
Confidence 444455567777 459999999999999999999999999999999999987554444444444444332 11
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014880 120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191 (416)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~ 191 (416)
-..|.+...+.+...+..+....++..++.| ++|-++..++.......++.+++.+...+....+
T Consensus 341 ------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp-~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 341 ------ELDFWILGLLVGTSLGGAQASSRSYLARLVP-KGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred ------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCC-CccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 1112222235667777888888899999886 4566888898888888888888877776665543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.4e-05 Score=78.46 Aligned_cols=173 Identities=15% Similarity=0.103 Sum_probs=109.0
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHh-HHHHHHH
Q 014880 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGA-GSVLVAV 102 (416)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~-~~~~~~~ 102 (416)
+..+.++.+.....+.+.....++|.|..+.|.+..++..++++..+.+.++.++.|.++|+...|+.++.. +.+...+
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl 377 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL 377 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence 344667777777777777778899999998899999999999999999999999999999998755544433 3333333
Q ss_pred HHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHH
Q 014880 103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (416)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~ 182 (416)
+. ++. | ..+.......+.+ ++|...+....-......|+. +.++-..+.++......++.++++.+
T Consensus 378 ~~--~~~---p-----~~~~~~~l~~~~~---~fG~~~g~~~~l~~~i~~~~~-g~~~l~~a~Gl~l~~~gi~~l~gpPi 443 (509)
T KOG2504|consen 378 AR--LFL---P-----FATTYVGLIVFSI---LFGFCVGSFSSLTPVILVDLV-GLEKLSNAYGLLLLFQGIGALVGPPI 443 (509)
T ss_pred HH--HHH---H-----HhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc-ChhhcchHHHHHHHHhHHHHHcCccc
Confidence 32 221 2 1122233333332 455444443333333444554 35666777888888777777765444
Q ss_pred HHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHH
Q 014880 183 AFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGI 219 (416)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 219 (416)
.+.+-+ ....|...|...++..++....
T Consensus 444 ----ag~~~d-----~tg~Y~~~f~~~g~~~~~s~~~ 471 (509)
T KOG2504|consen 444 ----AGLLYD-----ITGNYDHAFYFCGLCFLLSAVL 471 (509)
T ss_pred ----ceeeee-----ccCCeeeehhhcChHHHHHHHH
Confidence 443321 1223777777776666555543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.5e-06 Score=84.05 Aligned_cols=123 Identities=12% Similarity=0.121 Sum_probs=89.2
Q ss_pred HHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC---------------
Q 014880 275 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP--------------- 338 (416)
Q Consensus 275 ~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--------------- 338 (416)
.-++++++++..+.|++.+...++..++.++.+++ +|.+|| +.+.++.++.+++.++..+.+
T Consensus 57 ~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~--~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~ 134 (633)
T TIGR00805 57 TTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRP--IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSST 134 (633)
T ss_pred hhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcc--eEEEecHHHHHHHHHHHhChHHhcCCcccccccccc
Confidence 44667899999999999888888888888887776 333333 667777777777766554331
Q ss_pred -------------C--------------------c-hhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhH
Q 014880 339 -------------M--------------------N-MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT 384 (416)
Q Consensus 339 -------------~--------------------~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~ 384 (416)
. . ....+++..++.|+|.+..++...+++.+..++++++ .+.++
T Consensus 135 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~--~~~~i 212 (633)
T TIGR00805 135 GNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP--LYIGI 212 (633)
T ss_pred ccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH--HHHHH
Confidence 0 0 1234556779999999999999999999999988888 77777
Q ss_pred HHHHHHHHHHHHHHHHh
Q 014880 385 LSFLDKMSCGIAVYVLQ 401 (416)
Q Consensus 385 ~~~~~~~g~~ig~~l~~ 401 (416)
......+|..+|+.+.+
T Consensus 213 ~~~~~~iG~~lG~llgg 229 (633)
T TIGR00805 213 LESIAVFGPAFGYLLGS 229 (633)
T ss_pred HHHHHHhhhHHHHHHHH
Confidence 77777666666655444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.9e-05 Score=71.95 Aligned_cols=121 Identities=11% Similarity=0.134 Sum_probs=80.9
Q ss_pred HHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 014880 277 VINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIA 355 (416)
Q Consensus 277 ~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 355 (416)
+.++++.+..+.+....+..++..++.+..|++ ||++|| +.+..+..+..++.......+ +.+.+++.-++.|++
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr--~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~Gi~ 117 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRR--PVLITGALIFTLACAATLFTT--SMTQFLIARFIQGTS 117 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCch--HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 456788888888888888888888888888776 555554 777777777666665555543 677777788889998
Q ss_pred HHHHHHhhhhhheeeeccccccchhhhhHH----HHHHHHHHHHHHHHHhhh
Q 014880 356 NALMMVTGISMQNVLVGEDLSGCAFVCGTL----SFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~----~~~~~~g~~ig~~l~~~~ 403 (416)
.+...+.......+..++++.+ ...+.. +++..+|..+++.+.++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~lg~~l~~~~ 167 (413)
T PRK15403 118 ICFIATVGYVTVQEAFGQTKGI--KLMAIITSIVLVAPIIGPLSGAALMHFV 167 (413)
T ss_pred HHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8765555555566666666555 344444 444555555555555443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.3e-05 Score=76.10 Aligned_cols=155 Identities=13% Similarity=0.105 Sum_probs=99.5
Q ss_pred HHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----cchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh---H
Q 014880 246 WFKK-ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR----MGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL---K 317 (416)
Q Consensus 246 l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~---~ 317 (416)
.++. |.++.+...-+.-.+.+|++...+..|+..+.+ ++++++......+..-.-+..+++|++ +||. |
T Consensus 16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~l---aDr~LG~~ 92 (498)
T COG3104 16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWL---ADRVLGTR 92 (498)
T ss_pred cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHH---HHHhcchh
Confidence 3454 446667777888889999988888889888777 887765433333322222334445444 6665 5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeee---ccccccchhhhhHHHHHHHHHHH
Q 014880 318 AYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLV---GEDLSGCAFVCGTLSFLDKMSCG 394 (416)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~G~g~~~~~~~~~~~~g~~ 394 (416)
+.+..+.++..++.+.+...+......+++.+.+.++|.|..-++..++..+.. ++|+++ .+++.-.+.++|+.
T Consensus 93 ~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~---gFt~fY~~iNiGsl 169 (498)
T COG3104 93 RTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDG---GFTLFYMGINIGSL 169 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCC---CccEEEEEeehHHH
Confidence 888999999999987776553234566677888888999998887777766554 233433 22333334455666
Q ss_pred HHHHHHhhhccc
Q 014880 395 IAVYVLQSYQSK 406 (416)
Q Consensus 395 ig~~l~~~~~~~ 406 (416)
+++.+.+++..+
T Consensus 170 ~~p~i~~~~~~~ 181 (498)
T COG3104 170 IAPIITGLLAIN 181 (498)
T ss_pred HHHHHHHHHHHh
Confidence 666665555443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00023 Score=70.65 Aligned_cols=117 Identities=9% Similarity=0.085 Sum_probs=86.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCc----hhHHHHHHHHHHHHHHH
Q 014880 283 MGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMN----MSAFMYVLAIFVGIANA 357 (416)
Q Consensus 283 ~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~ 357 (416)
.+..+.+.+.....++.+++.++.+++ ++++|| +.+.++.++..++..+..+.+.. +.+.+++..++.|++.+
T Consensus 53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 130 (502)
T TIGR00887 53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRK--RVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIG 130 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHh
Confidence 344456677777888888999888776 455555 67777776666665554444321 14566778889999999
Q ss_pred HHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 358 LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
...+....+..|..|++.+| ...++.+....+|..+++.+...+
T Consensus 131 ~~~~~~~~~~~e~~p~~~Rg--~~~~~~~~~~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 131 GDYPLSAIITSEFATKKWRG--AMMAAVFAMQGFGILAGAIVALIV 174 (502)
T ss_pred hhhHHHHHHHHHhcChhhHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 778888888888877777665433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0002 Score=69.70 Aligned_cols=143 Identities=16% Similarity=0.098 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-H----HHhhhhHHHHHHH-HHHHH
Q 014880 255 VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-A----WTGQRLKAYYSAG-GVLWV 328 (416)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~----~~~~r~~~~~~~~-~~~~~ 328 (416)
++...+..++.+.....+.+.|+ +++|.+....+.+..+..+..++..++.|.+ | |++|| ++++++ ....+
T Consensus 9 ~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR--rp~il~g~~~~~ 85 (477)
T TIGR01301 9 VASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR--RPFIAAGAALVA 85 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh--HHHHHHHHHHHH
Confidence 33444445566666677778876 5689999888888888888888888887776 3 24444 555553 44555
Q ss_pred HHHHHHhhcCCc------------hh---HHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHH
Q 014880 329 FCGAGILILPMN------------MS---AFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSC 393 (416)
Q Consensus 329 ~~~~~~~~~~~~------------~~---~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~ 393 (416)
++..++.+.+.. .. +...+...+..++....++...++..|.+|++.+..+.+++..+....+|+
T Consensus 86 ~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ 165 (477)
T TIGR01301 86 FAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGN 165 (477)
T ss_pred HHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHH
Confidence 554444443210 01 222333445566777777777788888887664422266777666666666
Q ss_pred HHHHHHH
Q 014880 394 GIAVYVL 400 (416)
Q Consensus 394 ~ig~~l~ 400 (416)
.+|..+-
T Consensus 166 ilg~~~g 172 (477)
T TIGR01301 166 VLGYAAG 172 (477)
T ss_pred HHHHHHH
Confidence 6665443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.2e-05 Score=61.02 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccc
Q 014880 296 YICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGED 374 (416)
Q Consensus 296 ~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 374 (416)
.++..++.+..+++ +++++| +.+..+.....++....... ++.+......++.|++.+...+....+..+..|++
T Consensus 8 ~~~~~~~~~~~g~~~d~~g~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRFGRK--PVLLVGLFIFVLSTAMFALS--SNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred hhHHHHHHhhHHHHHhhcchh--HHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 44566667776665 444443 66666666656555544443 36666677788899999888888888888888888
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 014880 375 LSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (416)
Q Consensus 375 ~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~ 405 (416)
+++ ...+..+....+|..+++.+.+.+.+
T Consensus 84 ~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 84 ERG--VALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred hhh--HHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 877 67777777777777777776665543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00027 Score=65.51 Aligned_cols=142 Identities=11% Similarity=0.032 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 014880 259 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL 337 (416)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 337 (416)
.|+.+...+.....+-+.+++.++.+..+.+.+......+..+.++..+++ +|++.| +-++.++.++++++.+++-.
T Consensus 21 lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk--~gi~lgL~l~avg~~lF~pA 98 (422)
T COG0738 21 LFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYK--AGIVLGLLLYAVGAALFWPA 98 (422)
T ss_pred HHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhH--HHHHHHHHHHHHHHHHHhhh
Confidence 334334444445556667788999999999998888887888888777765 555554 88899999999887766533
Q ss_pred C-CchhHHHHHHHHHHHHHHHHHHHhhhhhheeeecccccc--chhhhhHHHHHHHHHHHHHHHHHhh
Q 014880 338 P-MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSG--CAFVCGTLSFLDKMSCGIAVYVLQS 402 (416)
Q Consensus 338 ~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G--~g~~~~~~~~~~~~g~~ig~~l~~~ 402 (416)
+ ..+...++...++.+.|.+......+.++...-+++... .....+.++++..+|..+++.++.+
T Consensus 99 a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 99 ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 3 345666777788999999998888888766655543222 2477788888888888888888774
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.01 Score=56.86 Aligned_cols=161 Identities=9% Similarity=0.146 Sum_probs=81.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--------
Q 014880 245 YWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL-------- 316 (416)
Q Consensus 245 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~-------- 316 (416)
+++|-|+.+.+.+..+.+-+++.....-...=+.| .|++....+....+..=..++.....+++.+ +++.
T Consensus 273 ~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~li~~P~qii~~~~~~Kws~-g~~P~~~~~~~l 350 (544)
T PF13000_consen 273 KILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLVLIDFPFQIILPYYIGKWSA-GSPPLDVDNKAL 350 (544)
T ss_pred HHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHHHHhhhHHHHHHHHhhhhhc-CCCccccccccc
Confidence 45666776777777777766666555444555555 5998887665544432234444444443311 1110
Q ss_pred -------H------------HHHHHHHHHHH----HHHHHHhhcC-Cch----hHHHH-HHHHHHHHHHHHHHHhhhhhh
Q 014880 317 -------K------------AYYSAGGVLWV----FCGAGILILP-MNM----SAFMY-VLAIFVGIANALMMVTGISMQ 367 (416)
Q Consensus 317 -------~------------~~~~~~~~~~~----~~~~~~~~~~-~~~----~~~~~-~~~~l~g~~~~~~~~~~~~~~ 367 (416)
| ++...+...-. ++.......| .+. +..++ +.-++..+..-..+....+.-
T Consensus 351 ~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFh 430 (544)
T PF13000_consen 351 PNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFH 430 (544)
T ss_pred cccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11222222111 1111112223 111 11111 112333444444444444444
Q ss_pred eeeeccccccchhhhhHHHHHHHHHH----HHHHHHHhhhccchhh
Q 014880 368 NVLVGEDLSGCAFVCGTLSFLDKMSC----GIAVYVLQSYQSKLCR 409 (416)
Q Consensus 368 ~~~~~~~~~G~g~~~~~~~~~~~~g~----~ig~~l~~~~~~~~~~ 409 (416)
....++.--| .++.+.|...++|+ .+.-+++|.+..+.|+
T Consensus 431 arISDP~IGG--TYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~~C~ 474 (544)
T PF13000_consen 431 ARISDPAIGG--TYMTLLNTVSNLGGTWPRTFVLWLVDYFTVATCT 474 (544)
T ss_pred hhccCcccch--HHHHHHHHHHhcCCCchHHHHHHHhhhccccccC
Confidence 4444555555 88898888888886 5777889999877775
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00068 Score=67.62 Aligned_cols=127 Identities=6% Similarity=-0.025 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC----Cchh
Q 014880 268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP----MNMS 342 (416)
Q Consensus 268 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 342 (416)
.+..+. ..+.+++|.+..+.+.+..+... .....++.|++ +++++ |+++.++.++..++..+..+.. .++.
T Consensus 45 ~fsv~s-~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~--R~vllig~ll~~iG~ll~ala~~~~i~~s~ 120 (591)
T PTZ00207 45 AFNLIS-GAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYLGP--RPIFVLSMTVFCLGTLLFALTFQEVIEGSV 120 (591)
T ss_pred HHHHHH-HHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHhcccccCcH
Confidence 334343 45678899999887766654222 22333445554 34444 4888888888888877766542 1367
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHh
Q 014880 343 AFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (416)
Q Consensus 343 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~ 401 (416)
+.+.+..++.|++.+...+.......+.+|+ ++| .+.|+......+|+.+.+.+..
T Consensus 121 ~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-~RG--~a~Gi~~~~~gLGsaI~~~l~~ 176 (591)
T PTZ00207 121 VRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-NRG--AVVAIMKTFTGLGSAILGSIQL 176 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-hhH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778889999887766655555555664 447 7888888888888876444443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.3e-05 Score=64.81 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=35.7
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchh
Q 014880 51 LTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKI 91 (416)
Q Consensus 51 ~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~ 91 (416)
++..|.-+.++|.+...+.-...+...+.|.++||-||||.
T Consensus 64 YstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKra 104 (454)
T KOG4332|consen 64 YSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA 104 (454)
T ss_pred ehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccc
Confidence 34558889999998888888888899999999999999997
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00019 Score=70.47 Aligned_cols=131 Identities=8% Similarity=-0.037 Sum_probs=92.0
Q ss_pred hCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccc--cccchhhHHHHHHH
Q 014880 54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL--STSTLKVETISYCV 131 (416)
Q Consensus 54 ~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 131 (416)
.|.++.++|.+.....+...++....+++.+|++.|+. +..+.+..+++...... ....+. ...+..+... .
T Consensus 283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~-l~~~~~l~~~~~~~~~~--l~~~~~~~~gi~~~~~~~---~ 356 (468)
T TIGR00788 283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLL-FGVTTLLYTLSSLFDLI--LVKRWNLAFGISDEVFVL---G 356 (468)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHHHhCcee--eeeccccccCCCCeeeee---e
Confidence 49999999999999999999999999999999999887 55555555554322110 000000 0001111111 1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014880 132 FAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191 (416)
Q Consensus 132 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~ 191 (416)
...+-+++.+...++...++.+..+ +++++...+......++|..+++.+++.+...++
T Consensus 357 ~~~l~~~~~g~~~~~~~~~~~~~~p-~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 357 DSIIAEVLAQLKFMPFLVLLARLCP-SGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred hhHHHHHHHHHHHccHHHHHHHhCC-CCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1124567777778888888888875 6788999999999999999999988888888776
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.021 Score=51.59 Aligned_cols=156 Identities=13% Similarity=0.070 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHH-HHHhhCCccCc
Q 014880 38 ITAACWFTYLLLFLTDIGLSP--RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS-FSSVFGGCMPC 114 (416)
Q Consensus 38 ~~~~~~~~~l~~~~~~~g~s~--~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~-~~~~~~~~~~~ 114 (416)
..........+.+..+.+.+. .+.++......+...+.+++.|.++||+|||+. +..+......+ ....+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~~~~~~~~~~~~----- 89 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKV-LIIGLLLFLLGTLLLALA----- 89 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHH-HHHHHHHHHHHHHHHHhC-----
Confidence 333444456667777765555 588999999999999999999999999999866 44444332333 222221
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHH-HHHHHHHHHHHHHHHHHHhcccc
Q 014880 115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYAIAFIVFSVSTAK 193 (416)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~-~~~~g~~l~~~~~~~l~~~~~~~ 193 (416)
.. ...+.....+ ...+++.+.......+++.+..++.++|+...+.... ....|..+++.+...+...
T Consensus 90 ---~~-~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 158 (338)
T COG0477 90 ---PN-VGLALLLILR---LLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA---- 158 (338)
T ss_pred ---cc-chHHHHHHHH---HHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 11 1122222222 2355666666667778888876420357777776666 4556666665444444432
Q ss_pred ccCchhhHHHHHHHHHHHHHH
Q 014880 194 THADLENQYRWIAYSSIFIGC 214 (416)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~i~~ 214 (416)
...+|++.+........
T Consensus 159 ----~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 159 ----LLWGWRAAFLLAALLGL 175 (338)
T ss_pred ----HhcchHHHHHHHHHHHH
Confidence 14578886655544443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.042 Score=53.79 Aligned_cols=132 Identities=10% Similarity=0.042 Sum_probs=74.5
Q ss_pred hhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHH----HHHHHHHHHHHHHHHHHh
Q 014880 147 HMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW----IAYSSIFIGCCFVGIFLS 222 (416)
Q Consensus 147 ~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~ 222 (416)
.+.+.+|.++ .+|-.|..+....+.++|.++++.+...+......... .....|.. .+.+..+.+++......+
T Consensus 165 FW~fAN~itt-~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~ 242 (491)
T PF03219_consen 165 FWGFANEITT-VEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLP-AGVDAWELSLNSLMGIVLILGIVIILLYRY 242 (491)
T ss_pred HHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cccccHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888874 67778889999999999999887777666651111100 01223432 232333333333333222
Q ss_pred h----ccCccc------cccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014880 223 R----TEEPRL------KMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND 280 (416)
Q Consensus 223 ~----~~e~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 280 (416)
. .++++. +++++++.+.++.++.++|+|....+++...+.....+.+..-.-..+.+.
T Consensus 243 ~~~~vl~~~~~~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~ 310 (491)
T PF03219_consen 243 MNKNVLTDPRFYPSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQL 310 (491)
T ss_pred HHHHccCccccchhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111 111223445678889999999988877777777676665554433344443
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.8e-05 Score=68.42 Aligned_cols=164 Identities=14% Similarity=0.105 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcc
Q 014880 37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (416)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~ 115 (416)
+...+++-+-++.+..|. ..+..++|+......+.++++.++.|.++||+++.| |+....-+...+..+.. +|
T Consensus 283 n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~-wl~~~~gl~~~G~~~~~---iP-- 356 (464)
T KOG3764|consen 283 NSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLR-WLLSLGGLATVGVSSGP---IP-- 356 (464)
T ss_pred cchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchh-HHHHHHHHHHHHHHhch---hH--
Confidence 445556667778888776 766669999999999999999999999999999766 55443333334332221 23
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHH---HHHhhhhhhhhccCCCc--cchhHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 014880 116 ILSTSTLKVETISYCVFAAIFNVGWA---ATQVAHMSMVNCITLNS--TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (416)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~al~~~~~~~~--~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~ 190 (416)
..+.+.....-. ...+++.+ ....|......|...+. +.-+...++......+|..+++.+++.+.
T Consensus 357 ---~~~~~~~L~vp~---~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv--- 427 (464)
T KOG3764|consen 357 ---FATSIAQLWVPN---FGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLV--- 427 (464)
T ss_pred ---hhhhHHHHhhhh---HHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhe---
Confidence 122222211111 11122222 23334434444322111 12355667777777777777776665555
Q ss_pred cccccCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 014880 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLS 222 (416)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 222 (416)
+..|++|...+.++..++...+...
T Consensus 428 -------~~iGF~wl~~iig~~n~iyapvl~l 452 (464)
T KOG3764|consen 428 -------EAIGFEWLMTIIGILNLIYAPVLLL 452 (464)
T ss_pred -------eehhHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999988888887777665543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=6.6e-05 Score=70.61 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=97.2
Q ss_pred HHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 014880 277 VINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGI 354 (416)
Q Consensus 277 ~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 354 (416)
.++.+|.+++..|++..+..+...+.+++.|.+ +||+ |+++.+|..++..+..+..+. ...|.+.+.-.+.|+
T Consensus 59 v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyL---adryNR~~v~~vG~~iW~~Av~~~~fs--~~Fwq~~l~R~~vGi 133 (493)
T KOG1330|consen 59 VQTYFNISDSELGLLQTVFIVVFMIASPLFGYL---ADRYNRKRVIAVGIFIWTLAVFASGFS--NHFWQVLLCRGFVGI 133 (493)
T ss_pred HHHhcCCCchhccchhHHHHHHHHHHHHHHHHH---HhhcCcceEEeeHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcc
Confidence 456688899988999998888889999998877 5555 577788888888876666655 478888888899999
Q ss_pred HHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHH
Q 014880 355 ANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVL 400 (416)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~ 400 (416)
|.+...+...+++.+.++++.++ ...++.+++...|.++|-..-
T Consensus 134 GeAs~~~ia~s~IaD~f~~~~Rs--~~~~ify~~ipvGsglG~vvg 177 (493)
T KOG1330|consen 134 GEASYSPIAPSLIADSFPDDKRS--RVLGIFYFAIPVGSGLGYVVG 177 (493)
T ss_pred chhhhcccchhHhhhcCcchhhh--HHHHHhhhhcccccceeEEee
Confidence 99999999999999999999988 889999999999988774433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00014 Score=70.90 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=66.4
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcc----cCCchhhHHhHHH
Q 014880 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIWHGAGSV 98 (416)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr----~Grrk~~ll~~~~ 98 (416)
...+.+++..+......+....++|.|+++. |.|..+++.+.....+.+.++.++.|.++|| ..+|..+.....+
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~ 352 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL 352 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3457788888888888888999999999995 8999999999999999999999999999999 5555554444444
Q ss_pred HHHHHHHH
Q 014880 99 LVAVSFSS 106 (416)
Q Consensus 99 ~~~~~~~~ 106 (416)
....+...
T Consensus 353 ~~~~g~~~ 360 (495)
T KOG2533|consen 353 YAIIGAIS 360 (495)
T ss_pred HHHHHHHH
Confidence 44444333
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0022 Score=63.85 Aligned_cols=123 Identities=12% Similarity=0.108 Sum_probs=81.5
Q ss_pred HHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q 014880 275 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVG 353 (416)
Q Consensus 275 ~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 353 (416)
.++.++.|-++. ..++.....++..++.++.|++ |.++|| ..++.+.++..++.+.....+ +...++....+.|
T Consensus 68 ~~I~~diG~~~~-~~w~~~~~~l~~av~~~~~G~LSDlfGRr--~~~i~g~~l~vvG~Iv~atA~--~~~~~iag~~l~G 142 (599)
T PF06609_consen 68 PYINADIGGSDN-WSWFSTAWTLASAVSFPFVGRLSDLFGRR--YFFIIGSLLGVVGSIVCATAQ--NMNTFIAGMVLYG 142 (599)
T ss_pred HHHHHhcCCCcc-chHHHHHHHHHHHHHHHhhHHHHHHhcch--HHHHHHHHHHHhHHHHhhcCC--cHHHHHHHHHHHH
Confidence 456666676644 3466666777788888888777 445554 777777777777766655444 6666778889999
Q ss_pred HHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 014880 354 IANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (416)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~ 405 (416)
+|.|..... .....|..|.|.++ ...++..........+++.+.+.+..
T Consensus 143 vgaG~~~~~-~~~isEl~p~k~R~--~~~~~~~~~~i~~~~~~~~ia~~~~~ 191 (599)
T PF06609_consen 143 VGAGVQELA-ALAISELVPNKWRG--LGLAIASIPFIITTWISPLIAQLFAA 191 (599)
T ss_pred HhhHHHHHH-HHHHHHhcccchhh--hHhHHHHHHHHhhhcccHHHHHHhcc
Confidence 998776543 33456777777777 55565565555555566666665543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00077 Score=67.10 Aligned_cols=113 Identities=15% Similarity=0.187 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 014880 287 AKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGIS 365 (416)
Q Consensus 287 ~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 365 (416)
+.+++.....+++.+++++.+++ ++++|| +.++++.++..++.++..+.+ +...+++.-++.|+|.|........
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk--~~l~~~~~~~~iG~ii~~~a~--~~~~l~~GR~l~G~g~G~~~~~~pi 165 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRK--KTLLLAVVLFLIGAIIIALAP--SWYQLIVGRILTGLGVGGASVLAPV 165 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhccchhhhhhcchh
Confidence 34788888899999999998887 556665 788888888888877777665 7788888889999999999888888
Q ss_pred hheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 014880 366 MQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 366 ~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~~ 406 (416)
+..|..|++.+| ...+.......+|..++ .+++...++
T Consensus 166 y~sEiap~~~RG--~l~~~~~l~~~~Gi~~~-~~~~~~~~~ 203 (513)
T KOG0254|consen 166 YISEIAPAHIRG--TLVSLYQLFITIGILLG-YCINYGTSK 203 (513)
T ss_pred hHhhcCChhhhH--HHHHHHHHHHHHHHHHH-HHHhhhhcc
Confidence 899999999999 77787888888776666 666655544
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00097 Score=62.89 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=80.6
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC-Cch----hHHHHHHHHHHHHHH
Q 014880 283 MGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP-MNM----SAFMYVLAIFVGIAN 356 (416)
Q Consensus 283 ~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~g~~~ 356 (416)
.++...+.+..+..++.++|+++.|++ ++++|| +++-..++++++|.+...... .++ .+.+...-+++|+|.
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK--~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGI 158 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK--KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGI 158 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch--hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccc
Confidence 444455677777888999999998887 455555 777777766666665333332 111 233444558899999
Q ss_pred HHHHHhhhhhheeeeccccccc--hhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 357 ALMMVTGISMQNVLVGEDLSGC--AFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~G~--g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
|.-+|.+.+..+|...++++|. +...+.-.++...|+.++-.+...+
T Consensus 159 GGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~f 207 (538)
T KOG0252|consen 159 GGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIF 207 (538)
T ss_pred cCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHH
Confidence 9999999999999999999982 4444444566666666665555554
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.019 Score=53.94 Aligned_cols=174 Identities=11% Similarity=0.017 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHHhHHHHHHHHHHHhhCCc
Q 014880 34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFGGC 111 (416)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr-~Grrk~~ll~~~~~~~~~~~~~~~~~ 111 (416)
+...+.+.+.-..+-+|--|. |+|..+...+.........++-...|++..| .++|| +...|....+.++.++.. +
T Consensus 218 ~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~-~a~~G~~~~~~~f~lii~-a 295 (403)
T PF03209_consen 218 FLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKR-TAALGCLLGALAFALIIL-A 295 (403)
T ss_pred HHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHHHHHHHHH-H
Confidence 344556666677778888887 9999999888888888888888889998885 55555 466777777666555432 0
Q ss_pred cCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014880 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191 (416)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~ 191 (416)
....+.+.... ...++|++.+...+...++.-+++. +++.+...+.....+..+..++..+++.+.....
T Consensus 296 -----~~~~~~~~~~~----~~~l~G~g~G~f~vgals~mM~lt~-~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~ 365 (403)
T PF03209_consen 296 -----GPLGSPWLFRP----GVFLLGLGNGLFTVGALSLMMDLTS-AGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR 365 (403)
T ss_pred -----HhcccchHHHH----HHHHHHHhhhHHHHHHHHHHHhCCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222212 1236888888888888888888885 5667777888877777777777777666654432
Q ss_pred ccccCchhhHHHHHHHHHHHHHHHHHHH
Q 014880 192 AKTHADLENQYRWIAYSSIFIGCCFVGI 219 (416)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 219 (416)
.....+...+|...|.+=++..++...+
T Consensus 366 ~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 366 ALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred HhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 1111124567777777665554444443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.017 Score=54.26 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=33.8
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCCh--HHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 014880 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSP--RGAAAVMLSGQIADGFATIFIGELIDR 85 (416)
Q Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~--~~~g~~~~~~~~~~~i~~p~~G~lsDr 85 (416)
..+..+.| .-..|+++.+.-+.|..+. +-++ .-.........+...+....--++.-|
T Consensus 22 i~~llGiG---~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~ 82 (406)
T KOG1479|consen 22 IFLLLGIG---TLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTR 82 (406)
T ss_pred HHHHHhcc---cccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 5578899988888888887 5444 222333334444444555555555556
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0094 Score=52.27 Aligned_cols=97 Identities=11% Similarity=0.102 Sum_probs=54.6
Q ss_pred cchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcc--ccccccC-
Q 014880 159 TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR--LKMGLRG- 235 (416)
Q Consensus 159 ~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~--~~~~~~~- 235 (416)
++|+..+.+...+.++|.++... +.+... +........|++.+.+.+++..+..+...++-+|-+ .++|+++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~i--pF~~~~---~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~k~~k 76 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNI--PFLISS---SVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKEKQEK 76 (267)
T ss_pred CccceeeeeccccchhhHHHHHh--hHHhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccccc
Confidence 46777777777888888877542 223220 000113456999988888777666555544433311 1111111
Q ss_pred ---CCchHHHHHHHHhhHHHHHHHHHHH
Q 014880 236 ---NSHARISWAYWFKKILYYQVALVYM 260 (416)
Q Consensus 236 ---~~~~~~~~~~l~~~~~~~~~~l~~~ 260 (416)
+.+.+...++.+|++.-|...+.+-
T Consensus 77 ~~~~~~~~~s~~~~LK~K~tw~w~~~Yg 104 (267)
T PF07672_consen 77 ENSTLSKKPSYKSILKEKETWKWILIYG 104 (267)
T ss_pred ccccccccchHHHHHccchHHHHHHHHH
Confidence 1224467788999998665544443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00025 Score=68.15 Aligned_cols=143 Identities=13% Similarity=0.036 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 014880 257 LVYMLTRLVVNVSQAYLAFYVIN-DLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGIL 335 (416)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 335 (416)
+..++.........+-.-.|+++ +.+.+.+..|++.....++..+.++..+.++....+.|++++.+.++.+++.+++.
T Consensus 41 ~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~ 120 (488)
T KOG2325|consen 41 LNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYL 120 (488)
T ss_pred HHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHH
Confidence 33444433333322333356654 46777778899888889999999999887754444446888999988888887763
Q ss_pred hc---CCchhHHHHHHHHHHHHHHHHHHHhhhhhheee--eccccccchhhhhHHHHHHHHHHHHHHHHHhhhc
Q 014880 336 IL---PMNMSAFMYVLAIFVGIANALMMVTGISMQNVL--VGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (416)
Q Consensus 336 ~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~--~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~ 404 (416)
.. +++..+.+++.-++.|+|.+... ..-.+..+. .+.|.+ +.+..+.++.+|..+|+.+=..+.
T Consensus 121 ~l~~~~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~dR~r----A~a~~~~~~vlg~ilGp~~q~~f~ 189 (488)
T KOG2325|consen 121 ALAYVPNGVKYLMLVARILTGVGVGNFA-VLRAYIADASTVEDRPR----AFAATSGGFVLGIILGPTIQLAFT 189 (488)
T ss_pred HHHhcccchHHHHHHHHHHcCcCcccHH-HHHHHHHhccCccchHH----HHHHhhhHHHHHHHHhHHHHHHHh
Confidence 22 33367777788899999987654 333444442 344443 334444555555555555444443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00064 Score=62.28 Aligned_cols=135 Identities=8% Similarity=-0.018 Sum_probs=79.0
Q ss_pred HHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 014880 67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVA 146 (416)
Q Consensus 67 ~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (416)
+..+...-+..+.|.+.||+||||. +....+.+.+..+.++. |. ..+....+.+.... .. .+....
T Consensus 389 itslaefPGlLIt~~iverlGRKkT-Mal~l~~f~iflfll~~-c~----~rn~~tvllf~ara----fi----sg~fqv 454 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVERLGRKKT-MALSLILFGIFLFLLTT-CK----TRNAYTVLLFTARA----FI----SGAFQV 454 (528)
T ss_pred HHHHhhCCchhHHHHHHHHhcchhH-HHHHHHHHHHHHHHHHH-hc----CcchhHHHHHHHHH----HH----hchheE
Confidence 3445566677899999999999998 65555555555444442 11 12222222222222 11 222234
Q ss_pred hhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014880 147 HMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (416)
Q Consensus 147 ~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e 226 (416)
...+.+|..| ..-|+...|.-.....+|+++.+.++ ...+ ..-..+..+.+.+.++..+...++.-|
T Consensus 455 aYvYtPEVyP-TavRatgvGtcSsmaRIggI~~p~iA-~~~e-----------~s~sl~i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 455 AYVYTPEVYP-TAVRATGVGTCSSMARIGGIFSPVIA-MRAE-----------LSTSLPIFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred EEEecCcccc-hhhhhcchhhhhhHHhhhhhhhhHHH-HHhc-----------cceeehHHHHHHHHHHHHHHheeeeec
Confidence 5567788876 57788888888888899998887766 2221 112334455556666666655566555
Q ss_pred cc
Q 014880 227 PR 228 (416)
Q Consensus 227 ~~ 228 (416)
++
T Consensus 522 tk 523 (528)
T KOG0253|consen 522 TK 523 (528)
T ss_pred cC
Confidence 43
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.17 Score=49.00 Aligned_cols=57 Identities=9% Similarity=0.169 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHH
Q 014880 341 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYV 399 (416)
Q Consensus 341 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l 399 (416)
+.+..++.+++.|+.+|-.......+..+.++++.+- .+..+.+++-.+|-.+|+.+
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e--~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHERE--VAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4455667788999999887766665555555444333 45555666666666666544
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.066 Score=49.01 Aligned_cols=236 Identities=12% Similarity=0.063 Sum_probs=109.1
Q ss_pred HHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHH
Q 014880 142 ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL 221 (416)
Q Consensus 142 ~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 221 (416)
+.++++.+.+=... |++++.+.++...+..-.|-..+..++-.++..- ..++...=.+...-..+...+..
T Consensus 110 AaEIAYysYIYs~V-d~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~--------~~sy~~LN~ISL~~~~ia~~~A~ 180 (433)
T KOG3810|consen 110 AAEIAYYSYIYSKV-DPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLE--------TLSYTTLNYISLAEVTIAVLLAL 180 (433)
T ss_pred HHHHhhhheeeeec-CHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhc--------ccchhhhchhhHHHHHHHHHHHh
Confidence 56677777666554 5778888888888877777777776666655431 23344333333232333333332
Q ss_pred hhccCccc-------ccc-------c-cCCCch-----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014880 222 SRTEEPRL-------KMG-------L-RGNSHA-----------RISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF 275 (416)
Q Consensus 222 ~~~~e~~~-------~~~-------~-~~~~~~-----------~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 275 (416)
+ .|.+++ +++ + +.+.+. .+.+.+..+||....-.+...+...+++.. .++..
T Consensus 181 f-LP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV-~nY~Q 258 (433)
T KOG3810|consen 181 F-LPRVKRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQV-TNYTQ 258 (433)
T ss_pred h-CCCCchhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHH-HHHHH
Confidence 2 222211 000 0 000000 112233344555433333344443344433 33344
Q ss_pred HHHhhcccch--hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHH
Q 014880 276 YVINDLRMGQ--SAKALVPAIIYICSFIVSILLQEMAWTGQRL-KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFV 352 (416)
Q Consensus 276 ~~~~~~g~~~--~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 352 (416)
.+.++..-.+ ..-|.+=.+..+.++++.+..|.++--.+|+ +..+.++....+ ..+++...+.+.|..++..++.
T Consensus 259 ~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~a--gllf~m~~t~~Iw~~Ya~yvlf 336 (433)
T KOG3810|consen 259 ILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQA--GLLFIMAQTQHIWVCYAGYVLF 336 (433)
T ss_pred HHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhh--hhhhhhhcccceehhhhhHHHH
Confidence 4444432111 1123344444444566666777653222333 234444433322 2333334445677777777666
Q ss_pred HHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHH
Q 014880 353 GIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMS 392 (416)
Q Consensus 353 g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g 392 (416)
..-.....+....-+....++|+-| ..+|++++...+-
T Consensus 337 r~~y~l~itiA~~~iA~nL~~e~~g--LvFGiNTFvAl~l 374 (433)
T KOG3810|consen 337 RVIYQLTITIATFQIARNLSSELFG--LVFGINTFVALIL 374 (433)
T ss_pred HhhHhhhhhHHHHHHHHhhhhhhhe--eeeehHHHHHHHH
Confidence 5555444333322222333455555 6666666554443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0044 Score=61.85 Aligned_cols=118 Identities=10% Similarity=0.107 Sum_probs=86.0
Q ss_pred hhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHH
Q 014880 279 NDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANA 357 (416)
Q Consensus 279 ~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 357 (416)
+..+.+........++..++..+|+++.|.+ ++++|| +++.++.++..++..+..+.+ +.+...+.-++.|++.+
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk--~~~~~~~~~~~i~~~~~a~a~--~~~~~~~~Rfl~G~~~~ 186 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRK--PVLLVSLLLFIIFGILTAFAP--NYWMFLIFRFLSGFFGS 186 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccH--HHHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhhcc
Confidence 4445555566677777788889999888877 556665 888888888888876666665 88888889999999999
Q ss_pred HHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 358 LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
........+..|..+++.++ .+... ......++.+++.+.+.+
T Consensus 187 ~~~~~~~~~~~E~~~~~~R~--~~~~~-~~~~~~~~~~~~~~~a~~ 229 (521)
T KOG0255|consen 187 GPLTVGFGLVAEIVSPKQRG--LALTL-GGFFFVGGLMLPAGAAYI 229 (521)
T ss_pred chhHHhHhhheeecCcchhh--HHHHH-HHHHHHHHHHHHHHHHHH
Confidence 99988998999999888888 44444 334444444444444433
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.15 Score=51.17 Aligned_cols=184 Identities=10% Similarity=0.042 Sum_probs=97.4
Q ss_pred CCchhhhhhcccchHH-HHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHHhHH
Q 014880 21 VGRWSVLYYGSGHMLN-DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGS 97 (416)
Q Consensus 21 ~~~~~~~~~~~g~~~~-~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr-~Grrk~~ll~~~ 97 (416)
...++...|-+++-.. ...+..+..-+..|+++. |.+...+.-......-...+...+.+.++|- +||-+. +.++.
T Consensus 33 ~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~t-I~~~s 111 (571)
T KOG1237|consen 33 TGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFT-INIGS 111 (571)
T ss_pred echhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHH-HHHHH
Confidence 3344445556655333 334444456777888886 8888888878888777777888899999997 588887 44444
Q ss_pred HHHHHHHH-HhhCCccCccc------------ccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCC--ccc-h
Q 014880 98 VLVAVSFS-SVFGGCMPCRI------------LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN--STS-R 161 (416)
Q Consensus 98 ~~~~~~~~-~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~~~-r 161 (416)
++..++.. +......|... +...+..-..+.|..+ ....+|.+.......+.-+|-.++ +++ +
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l-~lia~G~gg~r~~~~~fGadQfd~~~~~~~~ 190 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGAL-YLIALGAGGIRPCLLAFGADQFDELDPVEVK 190 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHH-HHheeccCCCCCcchhhcccccCccCcchhh
Confidence 44444421 11111112100 0111111111222211 123345566666666666665541 222 2
Q ss_pred --hHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHH
Q 014880 162 --VVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCF 216 (416)
Q Consensus 162 --~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 216 (416)
.....+.....++|.+++..+...+- +..+|.+-+.+..+...+.
T Consensus 191 ~~~~fFnW~yf~~~~g~l~a~t~~vyiq----------~~~~w~lgf~i~~~~~~la 237 (571)
T KOG1237|consen 191 GIPSFFNWFYFSQNGGALLAQTVLVYIQ----------DNVGWKLGFGIPTVLNALA 237 (571)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHhhh----------hcccceeeccHHHHHHHHH
Confidence 24467777778888777544332221 2445666555554444333
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0084 Score=42.48 Aligned_cols=54 Identities=17% Similarity=0.288 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 014880 255 VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM 309 (416)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~ 309 (416)
+-..+++..........|+|.|+.+ .|++..+.+.+..+..+..+++.++.|.+
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~l 58 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFL 58 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777788889999999986 69999999999999888888898887766
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0046 Score=57.11 Aligned_cols=114 Identities=14% Similarity=0.014 Sum_probs=73.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 014880 283 MGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMV 361 (416)
Q Consensus 283 ~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 361 (416)
.+....|++.+...+..++.++..|.+ ++.+|| .++.+|....++...++... ++...+...-++.|+..|-..
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRk--pvll~c~~~va~s~ll~~~S--~~F~afv~aR~l~Gi~kgnl~- 139 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRK--PVLLACLIGVALSYLLWALS--RNFAAFVLARFLGGIFKGNLS- 139 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCch--HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhccCchH-
Confidence 344567788888888899999887766 444554 77777776666654444333 355343344688888776653
Q ss_pred hhhhhheeeeccccccc--hhhhhHHHHHHHHHHHHHHHHHh
Q 014880 362 TGISMQNVLVGEDLSGC--AFVCGTLSFLDKMSCGIAVYVLQ 401 (416)
Q Consensus 362 ~~~~~~~~~~~~~~~G~--g~~~~~~~~~~~~g~~ig~~l~~ 401 (416)
...+++.|..++++++. +.+.-.++++..+|.++|+++..
T Consensus 140 v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 140 VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 45556667776666662 23333445667777778877776
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0048 Score=55.15 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=55.6
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhccchhhh
Q 014880 332 AGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSKLCRL 410 (416)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~ 410 (416)
.++++.| +.+.+++..+.=|+--|..+.++.--+....+++++- .+.+..+....+|..+++.+.--+++.+|+.
T Consensus 334 a~~~ftp--si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rE--famsavs~sDS~Gi~lA~~lalplh~~lC~~ 408 (409)
T KOG3880|consen 334 AWYWFTP--SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVRE--FAMSAVSISDSIGIFLAGLLALPLHNWLCHL 408 (409)
T ss_pred HHHHhcc--HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHH--HhHhhheecchhhHHHHHHHhccchhhhcCC
Confidence 4455555 7777777777778877777766666555545444443 6788888999999999999999999999974
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.013 Score=56.67 Aligned_cols=139 Identities=15% Similarity=0.031 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccc
Q 014880 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (416)
Q Consensus 38 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~ 117 (416)
.....+..|+=.+++|.|..+..-|.....-...-.+.-++.+++..|+||-++ +..+.....+=++.+-
T Consensus 385 ~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v-~~lgLa~~~~Rf~~~S--------- 454 (618)
T KOG3762|consen 385 AGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNV-MYLGLACNVGRFLYYS--------- 454 (618)
T ss_pred HHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccce-eeehhhHHHHHHHHHH---------
Confidence 344455566656667778777777866666666667778899999999999987 5555555544443321
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHH-HHHHHHHHHHHHHHHHHHHhcc
Q 014880 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYAIAFIVFSVST 191 (416)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~-~~~~~g~~l~~~~~~~l~~~~~ 191 (416)
...++|.....= .+.++..+.......+++++.+| ++-|..++++.+ ....+|--+++++++.+...++
T Consensus 455 ~L~n~W~vLPie----ilqgit~aliWaa~~sY~s~vaP-p~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg 524 (618)
T KOG3762|consen 455 YLQNPWMVLPIE----ILQGITHALIWAAIISYASHVAP-PGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG 524 (618)
T ss_pred HhcCchheeeHH----HHHHHHHHHHHHHHHHHHHhhCC-CcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh
Confidence 112233222111 25567777777777888888776 566777666543 3445555666666766665443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.027 Score=57.31 Aligned_cols=137 Identities=9% Similarity=0.049 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCc---
Q 014880 266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM--AWTGQRLKAYYSAGGVLWVFCGAGILILPMN--- 340 (416)
Q Consensus 266 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~--~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--- 340 (416)
++++...+..|+.+.+|.+...+..+........-+..++++.+ ++++++ +.+.++.++..++..++.+.+.+
T Consensus 3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~--~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKF--KTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHhccCcccc
Confidence 34556667788888888877654433333222222333344433 233443 66667776767776655543211
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccc-cchhhhhHHHHHHHHHHHHHHHHHhhhc
Q 014880 341 ---MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLS-GCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (416)
Q Consensus 341 ---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-G~g~~~~~~~~~~~~g~~ig~~l~~~~~ 404 (416)
.....+..+.+..+|.|..-|...+...+..+++.. -.-.++..+..+.++|+.++..+...+.
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~ 148 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILR 148 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123345666777888888877777766555543221 1124566677778888888877777664
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.099 Score=46.34 Aligned_cols=126 Identities=15% Similarity=0.058 Sum_probs=73.6
Q ss_pred HHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcC-----CchhH
Q 014880 271 AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILP-----MNMSA 343 (416)
Q Consensus 271 ~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 343 (416)
..+..-+++++|+++++...+.....++..+| ++.|.+ .|+. +.++.++.+...+++..++... ..+.|
T Consensus 22 s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l---~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~ 97 (250)
T PF06813_consen 22 SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLL---YDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVW 97 (250)
T ss_pred hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHH---HHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchH
Confidence 34445577889999999888877777776654 455554 4554 3667888888888877665442 12445
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 344 FMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 344 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
.+.....+.+.+.............+.+|+ ++| .+.|+.-....+++++=..+...+
T Consensus 98 ~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG--~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 98 LMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRG--TVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred HHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccC--ceehhhhHHHHhHHHHHHHHHHHH
Confidence 555555555555544433333333345564 567 566654444444444444444433
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.061 Score=38.64 Aligned_cols=68 Identities=19% Similarity=0.156 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHH
Q 014880 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (416)
Q Consensus 38 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~ 106 (416)
+.-...++.+|...+|.++|.++.|++-+.-.+.+.++.+...++.+|..+++. +..+.+...++...
T Consensus 6 igRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 73 (85)
T PF06779_consen 6 IGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRL-LRAGLLLTVLSTAA 73 (85)
T ss_pred hHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHH
Confidence 344555678888888889999999999999999999999999999998655554 55666555555444
|
Note that many members are hypothetical proteins. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.34 Score=39.54 Aligned_cols=103 Identities=15% Similarity=0.032 Sum_probs=65.6
Q ss_pred HHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHh
Q 014880 66 LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQV 145 (416)
Q Consensus 66 ~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (416)
.+.....++..++.+.+.++.|.|+. ++++.+.+.+-....+. | + .+. ......+.|++.+...+
T Consensus 44 ai~Y~~~~~s~l~~P~iv~~lg~K~s-m~lg~~~y~~y~~~~~~---~-------~-~~~---l~~~s~l~G~~~a~lW~ 108 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVNKLGPKWS-MILGSLGYAIYIASFFY---P-------N-SYT---LYPASALLGFGAALLWT 108 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHh---h-------h-HHH---HHHHHHHHhhhhHHhhH
Confidence 33444556677788888999999887 66666655544333221 1 1 111 11222367788888888
Q ss_pred hhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHH
Q 014880 146 AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 184 (416)
Q Consensus 146 ~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~ 184 (416)
+....+.+..+ +++|++..++.......+.+++.....
T Consensus 109 aqg~ylt~~s~-~~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 109 AQGTYLTSYST-EETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred hhhHHHHHcCC-HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887764 678888888777777777666554443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.68 Score=37.78 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=55.3
Q ss_pred HHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeecccccc
Q 014880 299 SFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSG 377 (416)
Q Consensus 299 ~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G 377 (416)
..++.++.+.+ ++++.| ..++++.+...+-... .+.+ +.+.++...++.|++.+..+...-.+..+..+++..+
T Consensus 50 ~~~s~l~~P~iv~~lg~K--~sm~lg~~~y~~y~~~-~~~~--~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~ 124 (156)
T PF05978_consen 50 FAISCLFAPSIVNKLGPK--WSMILGSLGYAIYIAS-FFYP--NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIG 124 (156)
T ss_pred HHHHHHhHHHHHHHHhhH--HHHHHHHHHHHHHHHH-HHhh--hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHh
Confidence 34444555443 455554 7777777665544332 2333 5677788889999999999887767766666555555
Q ss_pred chhhhhHHHHHHHHHHHHHH
Q 014880 378 CAFVCGTLSFLDKMSCGIAV 397 (416)
Q Consensus 378 ~g~~~~~~~~~~~~g~~ig~ 397 (416)
...++.-...+.+..+|+
T Consensus 125 --~~~~ifw~i~~~s~i~G~ 142 (156)
T PF05978_consen 125 --RNTGIFWAIFQSSLIFGN 142 (156)
T ss_pred --hHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.00023 Score=69.51 Aligned_cols=110 Identities=10% Similarity=0.143 Sum_probs=80.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHHHHHhhh
Q 014880 287 AKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMN-MSAFMYVLAIFVGIANALMMVTGI 364 (416)
Q Consensus 287 ~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~ 364 (416)
..+.......++..+|+++.|.+ ++++|| +.+..+..+..++.++..+.+.. +.+.+.+.-++.|++.|...+...
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~ 124 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRK--PALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP 124 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34566677778888898888876 566665 77777777777776555554422 566666777999999999998999
Q ss_pred hhheeeeccccccchhhhhHHHHHHHHHHHHHHHHH
Q 014880 365 SMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVL 400 (416)
Q Consensus 365 ~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~ 400 (416)
.+..|..|++.+| ...+..+....+|..++..+.
T Consensus 125 ~~~~E~~~~~~R~--~~~~~~~~~~~~G~~~~~~~~ 158 (451)
T PF00083_consen 125 IYISEIAPPKHRG--FLSSLFQLFWALGILLASLIG 158 (451)
T ss_pred ccccccccccccc--ccccccccccccccccccccc
Confidence 9999999888888 666766666667766665443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.11 Score=49.46 Aligned_cols=77 Identities=8% Similarity=-0.154 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhhhhhhhccCCCc--cchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHH
Q 014880 135 IFNVGWAATQVAHMSMVNCITLNS--TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFI 212 (416)
Q Consensus 135 ~~~~~~~~~~~~~~al~~~~~~~~--~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 212 (416)
+..+|.+..-+...++..|..+++ ++|.+...+.+.+.++|.+++..+.+.+- +..+|.+.|.+.++.
T Consensus 42 lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~----------~~~~~~~~f~i~~~~ 111 (372)
T PF00854_consen 42 LIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQ----------QNYGWFLGFGIPAIG 111 (372)
T ss_dssp HHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHH----------HCS-HHHHHHHHHHH
T ss_pred HHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhc----------cccchhhhhhHHHHH
Confidence 567888888888889999877543 45677788889999999888665544333 467899999988776
Q ss_pred HHHHHHHHH
Q 014880 213 GCCFVGIFL 221 (416)
Q Consensus 213 ~~~~~~~~~ 221 (416)
.++..+..+
T Consensus 112 ~~~~~~~f~ 120 (372)
T PF00854_consen 112 MLLALIVFL 120 (372)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.8 Score=40.26 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHh
Q 014880 257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGIL 335 (416)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~ 335 (416)
.++.+...+-+.-..|.-..+ +++|++..+++.+.....+.+.+.+.+.|.+ |+++|| +.-++..++..++++.
T Consensus 41 ~vY~La~~aDWLQGpY~Y~LY-~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk--~~cl~~cily~~scl~-- 115 (354)
T PF05631_consen 41 LVYLLAMAADWLQGPYLYALY-ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK--KACLLFCILYSLSCLT-- 115 (354)
T ss_pred HHHHHHHHHHHhhcchhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--HHHHHHHHHHHHHHHH--
Confidence 334444444443333332222 4689999888877776666666666665554 556655 4444444444444332
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 014880 336 ILPMNMSAFMYVLAIFVGIANALMMVTGIS 365 (416)
Q Consensus 336 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 365 (416)
-..++...+++.-++.|++..+.....-+
T Consensus 116 -k~~~~~~~L~~GRvlgGiaTSLLfS~FEs 144 (354)
T PF05631_consen 116 -KHSSNYPVLLLGRVLGGIATSLLFSAFES 144 (354)
T ss_pred -HhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22246777778889999999887754433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.45 Score=46.25 Aligned_cols=132 Identities=20% Similarity=0.205 Sum_probs=67.1
Q ss_pred HHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HH---HhhhhHHHHHHHHHHHHHHHHHHhhcCC--chhHHHH
Q 014880 273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AW---TGQRLKAYYSAGGVLWVFCGAGILILPM--NMSAFMY 346 (416)
Q Consensus 273 ~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 346 (416)
...|+++++|+++++...+..+..+.-.+- ++.|.+ |. .+.|+|..++++.++..++...+...+. ++.....
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~ 90 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAV 90 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHH
Confidence 346778889999988766555544333222 344444 21 2334345566666666555555555553 2344444
Q ss_pred HHHHHHHHHHHHHHHhhhhhheeee---cccccc--chhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 014880 347 VLAIFVGIANALMMVTGISMQNVLV---GEDLSG--CAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 347 ~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~G--~g~~~~~~~~~~~~g~~ig~~l~~~~~~~ 406 (416)
+.+++..+|........=....|.. |++ .| ++..+...+.+..++..+++.+.+..+++
T Consensus 91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~ 154 (433)
T PF03092_consen 91 VLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQ 154 (433)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCe
Confidence 5556666666654433222333333 222 33 12333444444455555555666555544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=5.5 Score=39.72 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=30.2
Q ss_pred HHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 014880 48 LLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR 85 (416)
Q Consensus 48 ~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr 85 (416)
.-.+... |-+....+.+++++....++++.+.|++.++
T Consensus 38 ~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~ 76 (521)
T PRK03612 38 GTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD 76 (521)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344444 8888999999999999999999998887644
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.11 E-value=2.2 Score=38.16 Aligned_cols=122 Identities=13% Similarity=0.207 Sum_probs=62.3
Q ss_pred HHHHHHHHhhcccch--hhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHH
Q 014880 271 AYLAFYVINDLRMGQ--SAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYV 347 (416)
Q Consensus 271 ~~~~~~~~~~~g~~~--~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (416)
...+.+..+. +.+. ...+.......+...++.++.|.+ ++.++| +.+..+......+.....+.+....+..++
T Consensus 23 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (338)
T COG0477 23 PALPLLLSTL-SLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRR--KVLIIGLLLFLLGTLLLALAPNVGLALLLI 99 (338)
T ss_pred HHHHHHHHHc-CCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccch--HHHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 3444444433 3332 244555555556666666666555 333333 444544433233323333333223555555
Q ss_pred HHHHHHHHHHHHHHhhhhhheeeecc-ccccchhhhhHHHH-HHHHHHHHHH
Q 014880 348 LAIFVGIANALMMVTGISMQNVLVGE-DLSGCAFVCGTLSF-LDKMSCGIAV 397 (416)
Q Consensus 348 ~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~G~g~~~~~~~~-~~~~g~~ig~ 397 (416)
.....|++.+...+....+..+..++ ++++ ...+.... ...+|..+++
T Consensus 100 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 149 (338)
T COG0477 100 LRLLQGLGGGGLLPVASALLSEWFPEATERG--LAVGLVTLGAGALGLALGP 149 (338)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCchhHHH--HHHHHHHHHHHHHHHHHHH
Confidence 55667888887777777777776665 3334 44444443 3444444444
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.91 E-value=6.7 Score=38.15 Aligned_cols=210 Identities=10% Similarity=0.021 Sum_probs=104.8
Q ss_pred CCChHHHHHHHHHHHH-HHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcc--cccc----------cc
Q 014880 55 GLSPRGAAAVMLSGQI-ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR--ILST----------ST 121 (416)
Q Consensus 55 g~s~~~~g~~~~~~~~-~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~--~~~~----------~~ 121 (416)
...++.+..+-+..-+ ...+..++.+++.++.-|.|.+-+....+. ..+.+......|.. +.+. .+
T Consensus 57 ~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~-~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p 135 (509)
T COG3202 57 RQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFL-GFFALFAFVIYPYKDILHPDPEFSRDLFADLP 135 (509)
T ss_pred cCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-HHHHHHHHHHhccccccCCCHHHHHHHHhhCC
Confidence 3566677777666655 566788999999999998887543332222 11111100011210 0000 00
Q ss_pred -----------hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 014880 122 -----------LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (416)
Q Consensus 122 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~ 190 (416)
.|...+.|. ..-+++. -....-.+....|++. .+|-.|..+..+.+.+++.++++.+...+....
T Consensus 136 ~~l~~~ili~~~Ws~s~~Yi-~aELWgs--lV~S~lFw~faNeitt-~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~ 211 (509)
T COG3202 136 MFLKWFILIVGEWSYSLFYI-MAELWGS--LVLSLLFWQFANEITT-IEEAKRFYPLFGLGANISLLLSGEVTSWLSKHR 211 (509)
T ss_pred ccceeeeEeecchHHHHHHH-HHHHHHH--HHHHHHHHHHHHHhhh-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 111122222 2222220 0111234566777764 667778888888888888887666655544321
Q ss_pred cccccCchhhHHHHHHHHHHHHHHHHHHHHHhhcc----Cccc--c-cc----ccCCCchHHHHHHHHhhHHHHHHHHHH
Q 014880 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE----EPRL--K-MG----LRGNSHARISWAYWFKKILYYQVALVY 259 (416)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----e~~~--~-~~----~~~~~~~~~~~~~l~~~~~~~~~~l~~ 259 (416)
............+..+.+.+..++++....++.-| ++.. + .+ ++.+....++++.+.|+|....+++..
T Consensus 212 ~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~kk~~~k~k~~~~~s~k~i~~SkyL~~ial~v 291 (509)
T COG3202 212 DALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKKKKKKLKLGLIESFKMILRSKYLGAIALLV 291 (509)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhcccccccccCcHHHHHHHHHhhhHHHHHHHHH
Confidence 10000001122444444444444444444333211 1110 0 01 111234567788899999888777777
Q ss_pred HHHHHHHHHH
Q 014880 260 MLTRLVVNVS 269 (416)
Q Consensus 260 ~~~~~~~~~~ 269 (416)
.+.+...+.+
T Consensus 292 l~Y~v~inLv 301 (509)
T COG3202 292 LAYGVSINLV 301 (509)
T ss_pred HHHHHHHHHH
Confidence 7776666544
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.012 Score=58.56 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=2.8
Q ss_pred HHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-H-HHHHHHHHHHHHHHHHHhhcC----C------c--
Q 014880 275 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL-K-AYYSAGGVLWVFCGAGILILP----M------N-- 340 (416)
Q Consensus 275 ~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~-~-~~~~~~~~~~~~~~~~~~~~~----~------~-- 340 (416)
.-++++++++.++.|++.+..-++..+..++..++ ++|. | |.+-.+.++++++.+++.+.+ . .
T Consensus 27 ttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~---g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~ 103 (539)
T PF03137_consen 27 TTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYF---GGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNS 103 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH---hhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccc
Confidence 45677899999999999999988888888776555 4333 2 344445555566654443221 0 0
Q ss_pred ------------------------------------hhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhH
Q 014880 341 ------------------------------------MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT 384 (416)
Q Consensus 341 ------------------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~ 384 (416)
...++++..++.|+|....++...+++.|.++++..+ .+.|+
T Consensus 104 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~sp--lYiGi 181 (539)
T PF03137_consen 104 NGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSP--LYIGI 181 (539)
T ss_dssp ------------------------------------------------SSS-----------------------------
T ss_pred ccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCc--cchhh
Confidence 0234556668889999999999999999999999888 67776
Q ss_pred HHHHHHHHHHHH
Q 014880 385 LSFLDKMSCGIA 396 (416)
Q Consensus 385 ~~~~~~~g~~ig 396 (416)
......+|.++|
T Consensus 182 ~~~~~~lGPa~G 193 (539)
T PF03137_consen 182 LYAMSILGPALG 193 (539)
T ss_dssp ------------
T ss_pred hhHHhhccHHHH
Confidence 666666666555
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=93.37 E-value=1.3 Score=31.84 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=44.2
Q ss_pred HHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcC
Q 014880 276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILP 338 (416)
Q Consensus 276 ~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 338 (416)
.++++.+++.++.+++.+.+.++..+|++...++.+..++ ++.+..+.+...+....+.+.+
T Consensus 17 ~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 17 LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRP-RRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 4556779999999999999999999999887765322221 4666777766666655555544
|
Note that many members are hypothetical proteins. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=6.4 Score=39.27 Aligned_cols=128 Identities=9% Similarity=0.015 Sum_probs=65.2
Q ss_pred HHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHH---HHHHHHHHhhc-C--CchhHHH
Q 014880 273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL-KAYYSAGGVL---WVFCGAGILIL-P--MNMSAFM 345 (416)
Q Consensus 273 ~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~-~~~~~~~~~~---~~~~~~~~~~~-~--~~~~~~~ 345 (416)
....+...+|.+....+.+..+...+..+|+.+.+++. ++. ++...+-..+ ...+..++... + .......
T Consensus 37 ~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~---~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~ 113 (521)
T PRK03612 37 LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLL---RDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLL 113 (521)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444677766666677777777777887766552 221 1211111111 11111111111 1 0111222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhheeeec---cccccchhhhhHHHHHHHHHHHHHHHHHh-hhcc
Q 014880 346 YVLAIFVGIANALMMVTGISMQNVLVG---EDLSGCAFVCGTLSFLDKMSCGIAVYVLQ-SYQS 405 (416)
Q Consensus 346 ~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~~G~g~~~~~~~~~~~~g~~ig~~l~~-~~~~ 405 (416)
+...++.++..|+..|....+.....+ .+. .|..|+...++..+|+.+.+++.- .+|.
T Consensus 114 ~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~--~g~ly~~ntlGa~~G~l~~~~vLlp~lG~ 175 (521)
T PRK03612 114 YVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHN--VATVLAADYLGALVGGLAFPFLLLPRLGL 175 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhhh--hhhhHhHHhHHHHHHHHHHHHHHHHhcch
Confidence 334455677777777766555443211 122 358889888888888888766554 5553
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=93.02 E-value=4.7 Score=39.00 Aligned_cols=128 Identities=15% Similarity=0.108 Sum_probs=78.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHH----HHHHHHhhCCccCcccccccch
Q 014880 47 LLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV----AVSFSSVFGGCMPCRILSTSTL 122 (416)
Q Consensus 47 l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 122 (416)
..-|+.+.|+++.++|..-+.+.+....+.....++.+|+|..|. =+++...- .++....+. | ....+.
T Consensus 281 mt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~-G~~~l~~q~~~L~~~v~~~~~---~---~~~~~~ 353 (432)
T PF06963_consen 281 MTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRA-GLWSLWWQWVCLALCVVSFWA---P---GSPFSS 353 (432)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-HHHHHHHHHHHHHHHHHHHhc---C---CCCchh
Confidence 456777779999999999999999999999999999999998886 33333321 222222222 2 111011
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHH
Q 014880 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (416)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~ 183 (416)
... ..+.......-+|-=+.+....-++-|.. +++||+..++.....+++--++...++
T Consensus 354 ~s~-~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V-~~~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 354 ISA-YLLLGGIALSRIGLWSFDLAVTQIMQENV-PESERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred hHH-HHHHHHHHHHHHHHHhhhHHHHHhhcccC-CHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11110001122333244455555555544 478999999999999998888765543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.24 E-value=5.6 Score=37.32 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=49.0
Q ss_pred CCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhH
Q 014880 21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWH 93 (416)
Q Consensus 21 ~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~l 93 (416)
...+..+..-.|.+......=++-.-...|+.++ |-|-..+..--.+-.....+..|+.|...|+..|+|+..
T Consensus 24 ~ls~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~ 97 (503)
T KOG2601|consen 24 LLSSTVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQ 97 (503)
T ss_pred cccceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHH
Confidence 3334444455566666665556666677788887 655555554444555666788899999999999999743
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.51 Score=45.04 Aligned_cols=49 Identities=16% Similarity=0.065 Sum_probs=36.3
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHH
Q 014880 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (416)
Q Consensus 55 g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~ 103 (416)
|.+....|.......+.+.+++.+.|.+.||...-|..++.......++
T Consensus 297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7777888888888889999999999999999765554344433333333
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.79 E-value=17 Score=35.43 Aligned_cols=107 Identities=13% Similarity=0.103 Sum_probs=58.0
Q ss_pred HHHHHHhhhhhhhhhhcc---cCCchhhHHhHHHHHHHHHHHhhCCccCcccc--cccc-h-hh--HHHHHHHHHHHHHH
Q 014880 68 GQIADGFATIFIGELIDR---FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL--STST-L-KV--ETISYCVFAAIFNV 138 (416)
Q Consensus 68 ~~~~~~i~~p~~G~lsDr---~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~-~~--~~~~~~~~~~~~~~ 138 (416)
..+...+...+.+.+++| +||++. +..+.++......+... +.|.... +... . .+ -.....++..+.|+
T Consensus 288 ~g~g~v~~g~~~~~l~~rir~fg~~~~-~~~~~~~~~~~~~li~l-~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~ 365 (461)
T KOG3098|consen 288 IGLGEVIGGLDFSILSKRIRGFGRKPT-VLIGIIIHLIGFLLIHL-SFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGF 365 (461)
T ss_pred HhHHHHHHHHHHHHHhhhhhhcccCcc-hhHHHHHHHHHHHHHhc-cccccCCCCCCcccccccccchhHHHHHHHHHhh
Confidence 334444455566666665 898766 66666655555444433 3342110 0000 0 00 01222333447888
Q ss_pred HHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHH
Q 014880 139 GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 178 (416)
Q Consensus 139 ~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l 178 (416)
+.+..+......+.+.. +++|..+.++...-..++..+
T Consensus 366 ~D~~~~t~~~~ii~~~~--~~~~~~~fsi~kfyq~~~s~v 403 (461)
T KOG3098|consen 366 GDACFNTQRYVIIALLY--PDDRAQAFSLFKFYQSVASCV 403 (461)
T ss_pred HHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHH
Confidence 88888888888777766 456776666666655555544
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=90.60 E-value=11 Score=37.03 Aligned_cols=41 Identities=5% Similarity=-0.045 Sum_probs=34.2
Q ss_pred hhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhc
Q 014880 362 TGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (416)
Q Consensus 362 ~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~ 404 (416)
.-|....|.+..+... ..+++.+.+.++|..+++.++..+.
T Consensus 149 lFW~fandi~t~~qak--Rfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 149 LFWGFANQITTIDEAK--RFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778877777766 8999999999999999999888765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.17 E-value=0.28 Score=46.81 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-H----HHhhhhHHHHHHHHHHHH
Q 014880 254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-A----WTGQRLKAYYSAGGVLWV 328 (416)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~----~~~~r~~~~~~~~~~~~~ 328 (416)
.+....+...+++..-..|.++|+++ .|.+....+.+....-+..++.+++.|.. + |++|| |+.+..+..+..
T Consensus 36 ~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR-RPfI~~~s~~i~ 113 (498)
T KOG0637|consen 36 SVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR-RPFILAGSLLIA 113 (498)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceecccccccccccccccccc-cchHHHhhHHHH
Confidence 34444555556666667899999866 59888877777766666666677776654 2 34444 333344444445
Q ss_pred HHHHHHhhcC--------Cchh-------HHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHH
Q 014880 329 FCGAGILILP--------MNMS-------AFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSC 393 (416)
Q Consensus 329 ~~~~~~~~~~--------~~~~-------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~ 393 (416)
++..++.+.+ .... .+.++...+.=+.....+...-++..++...+.+-. .+++...+...+|+
T Consensus 114 ~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~-~Ans~f~~f~avGn 192 (498)
T KOG0637|consen 114 VSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT-RANSVFSFFMAVGN 192 (498)
T ss_pred HHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh-ccchhHHHHHHhcc
Confidence 5544333322 1111 112222233334444445555556555553222220 14566667777776
Q ss_pred HHH
Q 014880 394 GIA 396 (416)
Q Consensus 394 ~ig 396 (416)
.+|
T Consensus 193 vLG 195 (498)
T KOG0637|consen 193 VLG 195 (498)
T ss_pred eee
Confidence 665
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.56 E-value=9.4 Score=37.38 Aligned_cols=119 Identities=7% Similarity=-0.027 Sum_probs=78.0
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhh-hhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHH
Q 014880 55 GLSPRGAAAVMLSGQIADGFATIFIG-ELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA 133 (416)
Q Consensus 55 g~s~~~~g~~~~~~~~~~~i~~p~~G-~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (416)
+.++.+.+...+...+...+.+.+.. .+.-.+|-|+. +..|...-.+....... . ...+..+...
T Consensus 273 ~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~-i~lGl~~~~~~~~~~af--------~-~~~w~~~~~~---- 338 (463)
T KOG2816|consen 273 GWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRL-ISLGLLSEFLQLLLFAF--------A-TETWMMFAAG---- 338 (463)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-hhHHHHHHHHHHHHHHH--------h-ccchhhhHHH----
Confidence 89999999999999999999999887 66667887774 66666655555433321 0 1112111111
Q ss_pred HHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 014880 134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (416)
Q Consensus 134 ~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~ 189 (416)
..........+...+.++.+. +++|||+..++......+...+++.+-..+...
T Consensus 339 -v~~~~~~~~~pa~~s~~s~~v-~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 339 -VVVALAGIVFPAIRAFASILV-SPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred -HHHHhhcchhHHHHhHHHhhc-ccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 111112233344556666655 578999999999999999888888777666554
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=88.48 E-value=15 Score=35.12 Aligned_cols=123 Identities=13% Similarity=0.060 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhh-cccchhhhh--HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHH
Q 014880 269 SQAYLAFYVIND-LRMGQSAKA--LVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFM 345 (416)
Q Consensus 269 ~~~~~~~~~~~~-~g~~~~~~~--~~~~~~~i~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (416)
...|+..|+.+. .|++..+.. +.+.- .=..++.-+....+.+.- |.|++++++.+...+...++.+.. +...+
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~-tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~--sv~~m 97 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVW-TYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT--SVLAM 97 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC--cHHHH
Confidence 457888898886 788876643 12211 111111112222232222 225777777776666666665554 77777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHH
Q 014880 346 YVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVY 398 (416)
Q Consensus 346 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~ 398 (416)
-+..++.|++.+.-. .-.+++-..+++++.- .+.+-...+...|..+++.
T Consensus 98 q~~q~~yg~~~a~ev-ay~sYiys~v~~~~yq--~vts~~raa~l~g~~~s~~ 147 (412)
T PF01770_consen 98 QLMQFFYGLATAAEV-AYYSYIYSVVDKEHYQ--KVTSYTRAATLVGRFISSL 147 (412)
T ss_pred HHHHHHHHHHHHHHH-HHHHHheeecCHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 778888888877643 3334444455544433 3444444444444444433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.09 E-value=32 Score=31.88 Aligned_cols=27 Identities=15% Similarity=0.005 Sum_probs=17.5
Q ss_pred HHHHhhhhhhhhhhcccCCchhhHHhHH
Q 014880 70 IADGFATIFIGELIDRFGHFKIWHGAGS 97 (416)
Q Consensus 70 ~~~~i~~p~~G~lsDr~Grrk~~ll~~~ 97 (416)
+....++.+.+.+..++|-|.. +..+.
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~t-m~lav 95 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWT-MVLAV 95 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH-HHHHH
Confidence 4444556667788888999766 44333
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=84.94 E-value=1.2 Score=45.48 Aligned_cols=120 Identities=16% Similarity=0.205 Sum_probs=81.0
Q ss_pred HHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcC-----------
Q 014880 272 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILP----------- 338 (416)
Q Consensus 272 ~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~----------- 338 (416)
-.-.-++++++++.++.|++....-++..+...+..++ +-|. -+.+-++.++++++.++..+.+
T Consensus 118 s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYf---G~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~ 194 (735)
T KOG3626|consen 118 SVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYF---GSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELE 194 (735)
T ss_pred hhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHh---ccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhh
Confidence 33345677889988888888777777777766665444 4333 2444555566655554443321
Q ss_pred C-------c-----------------------------h--hH-HHHHHHHHHHHHHHHHHHhhhhhheeeeccccccch
Q 014880 339 M-------N-----------------------------M--SA-FMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCA 379 (416)
Q Consensus 339 ~-------~-----------------------------~--~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g 379 (416)
. + + ++ .++...++.|+|....++...+++-|.+.+++..
T Consensus 195 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~Sp-- 272 (735)
T KOG3626|consen 195 VIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSP-- 272 (735)
T ss_pred hhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCc--
Confidence 0 0 0 22 3455668889999999999999999988888887
Q ss_pred hhhhHHHHHHHHHHHHH
Q 014880 380 FVCGTLSFLDKMSCGIA 396 (416)
Q Consensus 380 ~~~~~~~~~~~~g~~ig 396 (416)
++.|+......+|.++|
T Consensus 273 lYlgi~~~~~~lGPaiG 289 (735)
T KOG3626|consen 273 LYLGILYSMAILGPAIG 289 (735)
T ss_pred HHHHHHHHHHHhhhHHH
Confidence 78888887787777666
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=84.37 E-value=40 Score=32.34 Aligned_cols=51 Identities=8% Similarity=-0.112 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 014880 136 FNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (416)
Q Consensus 136 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~ 187 (416)
-|...|+..+.....+.+.. ++++|....+....+..+|..+++.++.++=
T Consensus 345 eGLlGGa~YVNtF~~I~~~~-~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 345 EGLLGGASYVNTFYRISEEV-PPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHhhhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44444455555555556554 4688999999999999999998887775543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=81.73 E-value=2.5 Score=40.10 Aligned_cols=89 Identities=8% Similarity=0.020 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHhhc--CC-----chhHHHHHHHHHHHHHHHHHHHhhhhhheeeecccc-ccchhhhhHHHHHH
Q 014880 318 AYYSAGGVLWVFCGAGILIL--PM-----NMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDL-SGCAFVCGTLSFLD 389 (416)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-~G~g~~~~~~~~~~ 389 (416)
+.+.++.++..++.+++... +. .....+++.+.+.++|.|..-|...++..+..+++. .-.-.++..+..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 45566666666666653322 21 123567788888999999999888888777765552 22235667777888
Q ss_pred HHHHHHHHHHHhhhccc
Q 014880 390 KMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 390 ~~g~~ig~~l~~~~~~~ 406 (416)
++|..++..+...+..+
T Consensus 82 n~G~~~~~~~~~~i~~~ 98 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQN 98 (372)
T ss_dssp HHHHHHHHHCCCHHHHC
T ss_pred hhhhHhhcccchhhccc
Confidence 88888887776666533
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 416 | |||
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.97 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.96 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.94 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.92 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.87 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.85 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.26 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.06 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.06 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.94 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.84 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.78 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.57 |
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-28 Score=234.80 Aligned_cols=363 Identities=11% Similarity=-0.039 Sum_probs=248.6
Q ss_pred CCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHH
Q 014880 20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (416)
Q Consensus 20 ~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~ 99 (416)
+.+++.........+..........+++|.+.++.|.|+.++|++.++..+...+++|+.|+++||+||||. ++.+.+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~-l~~~~~~ 100 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG-IITGLFL 100 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH-HHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH-HHHHHHH
Confidence 334445555556666666666777788888777789999999999999999999999999999999999988 5666666
Q ss_pred HHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHH
Q 014880 100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 179 (416)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~ 179 (416)
..++..+... ....+..+..... ..+.|++.+...++..+++.|..+ +++|++..++.+....+|.+++
T Consensus 101 ~~~~~~~~~~-------~~~~~~~~~l~~~---~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g 169 (438)
T 3o7q_A 101 YALGAALFWP-------AAEIMNYTLFLVG---LFIIAAGLGCLETAANPFVTVLGP-ESSGHFRLNLAQTFNSFGAIIA 169 (438)
T ss_dssp HHHHHHHHHH-------HHHTTCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHSSC-STTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-------ccccccHHHHHHH---HHHHHhhHHHhhhhHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHH
Confidence 6666544310 0011112222222 236778888888888999999985 6889999999999999999999
Q ss_pred HHHHHHHH-Hhccccc---------------cCchhhHHHHHHHHHHHHHHHHHHHHHhh-ccCccccc-cccCCCchHH
Q 014880 180 YAIAFIVF-SVSTAKT---------------HADLENQYRWIAYSSIFIGCCFVGIFLSR-TEEPRLKM-GLRGNSHARI 241 (416)
Q Consensus 180 ~~~~~~l~-~~~~~~~---------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~e~~~~~-~~~~~~~~~~ 241 (416)
+.++..+. ...+... ..+...+||+.+.+.+++..+..++.++. .||++.++ +++++++.++
T Consensus 170 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 249 (438)
T 3o7q_A 170 VVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSA 249 (438)
T ss_dssp HHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHH
T ss_pred HHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhh
Confidence 88887776 3322100 00011239999887776665555444332 34433221 2223345567
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHH
Q 014880 242 SWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFY-VINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAY 319 (416)
Q Consensus 242 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~ 319 (416)
++++++|+|.++...+..++..........+.|.| +++.+|.+..+.+.......++.+++.++.+++ +|+++| +.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~--~~ 327 (438)
T 3o7q_A 250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH--KV 327 (438)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH--HH
T ss_pred hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HH
Confidence 78899999998888888888877788888999999 888889999988888888888888898888776 444444 66
Q ss_pred HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHH
Q 014880 320 YSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYV 399 (416)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l 399 (416)
+..+.++..++...+.+.+ +.+. ....++.|++.+...+...++..+..+++ ++ ...+... ...+|..+++.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~-~~~~g~~~~~~~ 400 (438)
T 3o7q_A 328 LAAYALIAMALCLISAFAG--GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK--YGSSFIV-MTIIGGGIVTPV 400 (438)
T ss_dssp HHHHHHHHHHHHHHHHHCC--HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HH--HHHHHHH-HTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC--CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc--chhhHHH-HHHHHHHHHHHH
Confidence 6667666666655555544 3333 34457788888888888888766666655 44 3333333 333555555444
Q ss_pred Hhhh
Q 014880 400 LQSY 403 (416)
Q Consensus 400 ~~~~ 403 (416)
.+.+
T Consensus 401 ~g~l 404 (438)
T 3o7q_A 401 MGFV 404 (438)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-30 Score=247.27 Aligned_cols=355 Identities=13% Similarity=0.017 Sum_probs=256.8
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHH
Q 014880 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (416)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~ 103 (416)
+......++.+..........+++|.+.++. .++.++|++.++..+...+++|+.|+++||+||||. ++.+.+...++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-l~~~~~~~~~~ 105 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILAAAV 105 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHH-HHHHHHHHHHH
Confidence 3344555566666666666778888888889 999999999999999999999999999999999887 66666666666
Q ss_pred HHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHH
Q 014880 104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (416)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~ 183 (416)
.++... .+ ....+.....+. + .+.+++.+...++..+++.|..+ +++|++..++.+.+..+|.++++.++
T Consensus 106 ~~~~~~--~~---~~~~~~~~l~~~-~---~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 106 MLFMGF--VP---WATSSIAVMFVL-L---FLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHHH--CH---HHHSSSSHHHHH-H---HHHHHHHHHTHHHHHHHHHTTCT-TTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHh--hh---hccccHHHHHHH-H---HHHHHHhhhccchHHHHHHHHCC-chhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 544321 00 001122222222 2 36778888888888999999885 67899999999999999999988887
Q ss_pred HHHHHhccccccCchhhH-HHHHHHHHHHHHHHHHHHHHhhccCccccccc---cC--C-------------Cc-hHHHH
Q 014880 184 FIVFSVSTAKTHADLENQ-YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---RG--N-------------SH-ARISW 243 (416)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~---~~--~-------------~~-~~~~~ 243 (416)
+.+.. ..+ ||+.+++.+++.++..++.++..||++.+++. ++ + .+ .+...
T Consensus 176 ~~l~~----------~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (451)
T 1pw4_A 176 LLGMA----------WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFM 245 (451)
T ss_dssp HHHHH----------HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHH
T ss_pred HHHHH----------HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchH
Confidence 76663 345 99999988888777766666666664432110 00 0 00 11114
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHH--hhhhHHHH
Q 014880 244 AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWT--GQRLKAYY 320 (416)
Q Consensus 244 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~--~~r~~~~~ 320 (416)
++.+|+|.++...+..++..........++|.|+.+.+|.+..+.+.+.....++.+++.++.+++ +|+ ++| +.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--~~~ 323 (451)
T 1pw4_A 246 QYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR--GAT 323 (451)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH--HHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhH
Confidence 677889998888888888888888889999999998889999888888888888899999888876 444 443 555
Q ss_pred HHHHHHHH-HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHH-HHHHHHH
Q 014880 321 SAGGVLWV-FCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKM-SCGIAVY 398 (416)
Q Consensus 321 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~-g~~ig~~ 398 (416)
..+..+.. ++...+.+.+.++.+...+..++.|++.+...+....+..+..|++.+| .++|+.+....+ |..+++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~g~~~~~~ 401 (451)
T 1pw4_A 324 GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGYLGGSVAASA 401 (451)
T ss_dssp HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhh--hHHHHHHHHHHHHHHHHHHH
Confidence 55554444 5544444444345666667778888888888877778888888888888 788888877777 7777776
Q ss_pred HHhhhc
Q 014880 399 VLQSYQ 404 (416)
Q Consensus 399 l~~~~~ 404 (416)
+.+.+.
T Consensus 402 ~~g~l~ 407 (451)
T 1pw4_A 402 IVGYTV 407 (451)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=229.42 Aligned_cols=345 Identities=11% Similarity=0.007 Sum_probs=247.6
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhh
Q 014880 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (416)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~ 108 (416)
..+..+..........+.+|.+.++.|.|+.++|++.++..+...+++|+.|+++||+||||. +..+.....++.....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV-ILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-HHHHHHHHHHHHHHHH
Confidence 344556666777777788888777789999999999999999999999999999999999998 5555555555544432
Q ss_pred CCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 014880 109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (416)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~ 188 (416)
. .+..+.... ...+.+++.+...+...+++.|..+ +++|++..+..+....+|..+++.+++.+.
T Consensus 84 ~----------~~~~~~l~~---~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~- 148 (375)
T 2gfp_A 84 T----------TSSLTVLIA---ASAMQGMGTGVGGVMARTLPRDLYE-RTQLRHANSLLNMGILVSPLLAPLIGGLLD- 148 (375)
T ss_dssp H----------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-TSSCCSHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred H----------hccHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-
Confidence 1 111222222 2236677788888888888898875 578999999999999999888777665544
Q ss_pred hccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 014880 189 VSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNV 268 (416)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 268 (416)
+..+||+.+.+.+++.++..+...+..||++.+++ ++++.++++++++|||+++...+..++.......
T Consensus 149 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (375)
T 2gfp_A 149 ---------TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDA--PRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAA 217 (375)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTC--CCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCc--ccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 35689999998887777766655566677543322 2223344567788999988888888888788888
Q ss_pred HHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHH--HhhcCCchhHHH
Q 014880 269 SQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVL-WVFCGAG--ILILPMNMSAFM 345 (416)
Q Consensus 269 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~ 345 (416)
...+.|.|+++++|.++.+.+.......++.+++.++.+++ .||.++....+... ...+... ....+.++.+..
T Consensus 218 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l---~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (375)
T 2gfp_A 218 FEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRP---NKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTL 294 (375)
T ss_dssp HHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTT---TTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHH
Confidence 88999999988889998888888888777777777776544 66654333333333 2222211 111112345555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 014880 346 YVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 346 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~~ 406 (416)
.+..++.|++.+...+....+..+..| +++| .+.++.+....+|..+++.+.+.+.++
T Consensus 295 ~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g--~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 295 LVPAALFFFGAGMLFPLATSGAMEPFP-FLAG--TAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp HHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHH--HHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCC-cccc--hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 667788899998888888888777777 6666 888999999999999888877766543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-23 Score=205.84 Aligned_cols=356 Identities=9% Similarity=-0.033 Sum_probs=234.7
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHHhH
Q 014880 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTD------IGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAG 96 (416)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~------~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr-~Grrk~~ll~~ 96 (416)
+..+......+.....+.....+++.|+++ .|.|+.++|++.++..+...+++|+.|+++|| +||||. +..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~-~~~~ 91 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA-VFWG 91 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH-HHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH-HHHH
Confidence 344555566677777777788888888876 69999999999999999999999999999999 899987 5666
Q ss_pred HHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccc--hhHHHhHHHHHHHH
Q 014880 97 SVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS--RVVLTSCRNAFTMV 174 (416)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~--r~~~~~~~~~~~~~ 174 (416)
.+...++..+... . .+.... ...+ .+.+++.+...++..+++.|+.+ +++ |++..+..+...++
T Consensus 92 ~~~~~~~~~~~~~-------~--~~~~~~-~~~~---~l~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~ 157 (491)
T 4aps_A 92 GVLIMLGHIVLAL-------P--FGASAL-FGSI---ILIIIGTGFLKPNVSTLVGTLYD-EHDRRRDAGFSIFVFGINL 157 (491)
T ss_dssp HHHHHHHHHHHHS-------C--CSTTHH-HHHH---HHHHHHHHHHHHHHHHHHHHHSS-SCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------h--hhHHHH-HHHH---HHHHHHHHhccchHHHHHHHHcC-cccccceeeehHHHHHHHH
Confidence 6666666544431 1 122222 2222 35677788888888899999875 455 66677778888899
Q ss_pred HHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccc--cccC--CCch-HHHHHH----
Q 014880 175 ANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM--GLRG--NSHA-RISWAY---- 245 (416)
Q Consensus 175 g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~--~~~~--~~~~-~~~~~~---- 245 (416)
|..+++.+++.+.. ..+||+.+.+.++..++..+..++..++...++ ++++ +++. ++..+.
T Consensus 158 g~~~~~~~~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 227 (491)
T 4aps_A 158 GAFIAPLIVGAAQE----------AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLA 227 (491)
T ss_dssp HHHHHHHHHHHHHH----------HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHH
Confidence 99888887776653 467999998876665555544433322211111 1111 1111 110000
Q ss_pred -------------------------------------------------HHhhH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 014880 246 -------------------------------------------------WFKKI--LYYQVALVYMLTRLVVNVSQAYLA 274 (416)
Q Consensus 246 -------------------------------------------------l~~~~--~~~~~~l~~~~~~~~~~~~~~~~~ 274 (416)
..+++ ..+.+.+..++..........++|
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (491)
T 4aps_A 228 VAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLA 307 (491)
T ss_dssp CHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHH
T ss_pred HHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 00111 122333344444455555667888
Q ss_pred HHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhh---HHHHHHHHHHHHHHHHHHhhc-------CCchhH
Q 014880 275 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL---KAYYSAGGVLWVFCGAGILIL-------PMNMSA 343 (416)
Q Consensus 275 ~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 343 (416)
.|..+..+.+....+.......+...++.++.+++ +|++||. .+.+..+..+.+++...+... +..+.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
T 4aps_A 308 TFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPL 387 (491)
T ss_dssp HHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTH
T ss_pred HHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHH
Confidence 89888777775556666666677777777777765 5555552 223335555555555444332 122455
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 014880 344 FMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSK 406 (416)
Q Consensus 344 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~~ 406 (416)
...+..++.|++.+...+....+..+..|++.+| .+.|+.+....+|..+++.+.+.+.+.
T Consensus 388 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 388 WLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS--QMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS--SSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5667778889999888888888888888999888 788888999999999999998776543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.9e-25 Score=209.41 Aligned_cols=354 Identities=10% Similarity=0.055 Sum_probs=195.8
Q ss_pred CCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHH
Q 014880 21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (416)
Q Consensus 21 ~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~ 99 (416)
++.++.+......+.....+....+++|.|+++. |.|+.++|++.++..+...+++|+.|+++||+||||+++ .+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~-~~~~~ 82 (417)
T 2cfq_A 4 LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL-WIITG 82 (417)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHH-HHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-HHHHH
Confidence 3445555555555666666677778999999885 999999999999999999999999999999999999844 33332
Q ss_pred HHHHH-HHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHH
Q 014880 100 VAVSF-SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 178 (416)
Q Consensus 100 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l 178 (416)
..+.. ........+ ....... ....+.....+..++.......+..++. +++|+...+..+....+|..+
T Consensus 83 ~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~g~~~ 153 (417)
T 2cfq_A 83 MLVMFAPFFIFIFGP---LLQYNIL---VGSIVGGIYLGFCFNAGAPAVEAFIEKV---SRRSNFEFGRARMFGCVGWAL 153 (417)
T ss_dssp TTSCHHHHHHHTHHH---HHHTTCC---HHHHGGGSSTTHHHHTTHHHHHHHHHHH---HHHHTCCHHHHSSSTTTHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHh---hhhcccchHHHHHHHHHHHHH
Confidence 22110 010000000 0000000 0000000011222222222222222211 123444445554556667666
Q ss_pred HHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccc--cc----cCCCchHHHHHHHHhhHHH
Q 014880 179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM--GL----RGNSHARISWAYWFKKILY 252 (416)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~--~~----~~~~~~~~~~~~l~~~~~~ 252 (416)
++.++..+. ..+|++.+++.++..++..+..++..||++++. ++ ++++...+++++++|+|++
T Consensus 154 ~~~l~~~l~-----------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (417)
T 2cfq_A 154 GASIVGIMF-----------TINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKL 222 (417)
T ss_dssp HHHHHHHHH-----------HHCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHH-----------HhchhHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCch
Confidence 666665554 235788887665554444433333334432111 00 1111123456778899988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---chhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHH
Q 014880 253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRM---GQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWV 328 (416)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~ 328 (416)
+...+..+.....+.....++|.|+.+.++. +....+....+..++.+++.++.+++ +|+++| +.+..+..+.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~l~~~~~~~~ 300 (417)
T 2cfq_A 223 WFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK--NALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH--HHHHHHHHHHH
Confidence 7666554444444455556688888765542 23344556666666677777777665 444443 66666666655
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhH-HHHHHHHHHHHHHHHHh
Q 014880 329 FCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQ 401 (416)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~-~~~~~~~g~~ig~~l~~ 401 (416)
++...+.+.+ +.+.+.+...+.+++.+...+..+.+..+..|++.+| ..++. ++....+|+.+++.+.+
T Consensus 301 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~lg~~~gp~l~G 370 (417)
T 2cfq_A 301 VRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA--TIYLVCFCFFKQLAMIFMSVLAG 370 (417)
T ss_dssp HHHHHHTTCC--SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHH--HHHHHHHTTTHHHHHHHHTHHHH
T ss_pred HHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHhHHHHHhhhhHH
Confidence 5544443333 4455555556677776666666667777888888777 55555 24444444444444443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-21 Score=188.91 Aligned_cols=353 Identities=9% Similarity=-0.028 Sum_probs=203.7
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHh-C------CChHHHHHHHHHHHHHHHhhhhhhhhhhccc-CCchhhHHhHH
Q 014880 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-G------LSPRGAAAVMLSGQIADGFATIFIGELIDRF-GHFKIWHGAGS 97 (416)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g------~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~-Grrk~~ll~~~ 97 (416)
.+......+.....++....+++.|+++. | .|+.++|++.+++.+...+++++.|+++||+ ||||. +..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~-~~~~~ 92 (524)
T 2xut_A 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT-ILWLS 92 (524)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHH
Confidence 34455566667777778888999998875 8 9999999999999999999999999999999 99987 55555
Q ss_pred HHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhH---HHHHHHH
Q 014880 98 VLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC---RNAFTMV 174 (416)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~---~~~~~~~ 174 (416)
+...++..+... .. .+.....+. ..+.+++.+...++..+++.|..+ +++|++..+. .+...++
T Consensus 93 ~~~~~~~~~~~~-------~~-~~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~ 159 (524)
T 2xut_A 93 LIYCVGHAFLAI-------FE-HSVQGFYTG----LFLIALGSGGIKPLVSSFMGDQFD-QSNKSLAQKAFDMFYFTINF 159 (524)
T ss_dssp HHHHHHHHHHHH-------TS-SCHHHHHHH----HHHHHHHHHTTHHHHHHHHHHTCS-TTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------hc-ccHHHHHHH----HHHHHHhccccchhHHHHHHHHcC-ccchHHHHHHHHHHHHHHHH
Confidence 555555444321 11 122222222 236678888888888899999886 5677665555 7777888
Q ss_pred HHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccc-ccccCCCch--------------
Q 014880 175 ANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK-MGLRGNSHA-------------- 239 (416)
Q Consensus 175 g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~-~~~~~~~~~-------------- 239 (416)
|..+++.+++.+. +..+|++.+.+.+++.++..+..++..++.+.+ +++++..+.
T Consensus 160 g~~~g~~~~~~l~----------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (524)
T 2xut_A 160 GSFFASLSMPLLL----------KNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEG 229 (524)
T ss_dssp HHHHHHHTSTHHH----------HTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTT
T ss_pred HHHHHHHHHHHHh----------ccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcc
Confidence 8877766655554 245799999888777665554443322221111 100000000
Q ss_pred -HH-------------------------------------------HHHHHH-----------hhHH-HHHHHHHHH---
Q 014880 240 -RI-------------------------------------------SWAYWF-----------KKIL-YYQVALVYM--- 260 (416)
Q Consensus 240 -~~-------------------------------------------~~~~l~-----------~~~~-~~~~~l~~~--- 260 (416)
.. ++++.. ++++ .........
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (524)
T 2xut_A 230 KGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVT 309 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSH
T ss_pred cCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHH
Confidence 00 000000 1111 111111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccch-hhhhHHHHHHHHHHHHHHHHHHH-----HHHHhhhh--HHHHHHHHHHHHHHHH
Q 014880 261 LTRLVVNVSQAYLAFYVINDLRMGQ-SAKALVPAIIYICSFIVSILLQE-----MAWTGQRL--KAYYSAGGVLWVFCGA 332 (416)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~i~~~~~~~l~~~-----~~~~~~r~--~~~~~~~~~~~~~~~~ 332 (416)
+..........+++.+..+ .+.+. ...+.+.....++.++..++.++ .++.++|. ++.+.++.++.+++..
T Consensus 310 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 388 (524)
T 2xut_A 310 PFWSLFDQKASTWILQAND-MVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWI 388 (524)
T ss_dssp HHHTTTSSTTTHHHHHHHH-SCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHH
T ss_pred HHHHHHhccchhhHHhHHh-cCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Confidence 1111111112233333322 22211 11223222222233334333332 12322222 2445566666666655
Q ss_pred HHhhcC-------CchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 014880 333 GILILP-------MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (416)
Q Consensus 333 ~~~~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~ 405 (416)
.+.... ..+.+...+..++.|++.+...+...++..+..|++.+| .++|+.+....+|+.+++.+.+.+.+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 389 VVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKG--TIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp TTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCT--TTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHh--HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444432 134555667778899999999888888888889998888 78888888888888888888877654
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-19 Score=172.60 Aligned_cols=333 Identities=12% Similarity=0.053 Sum_probs=188.1
Q ss_pred ChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCccc----------ccccchhhHH
Q 014880 57 SPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI----------LSTSTLKVET 126 (416)
Q Consensus 57 s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 126 (416)
+..+.|++.+.+.+...+++++.|+++||+|||+. ++.+.+++.++.++... .+... ....+....+
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~-l~~~~~l~~i~~i~~a~--~~~~~~~~~~~~~~~~~~a~~~~~l 129 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS-LKIAAVLFFISGVGSAW--PELGFTSINPDNTVPVYLAGYVPEF 129 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH-HHHHHHHHHHHHHHHHC--TTTTTSCSSSSSSCCGGGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHH--HhhhhhhhcchhHHHHHHhhhHHHH
Confidence 45678899999999999999999999999999988 55555555555433321 01000 0011222233
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHH
Q 014880 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIA 206 (416)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (416)
+..+ .+.|++.+...+...+++.|..+ +++|++..+..+.+...|.+++..++..+........ .....||+.+
T Consensus 130 ~~~R---~l~G~g~G~~~~~~~~~i~E~~p-~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 203 (491)
T 4gc0_A 130 VIYR---IIGGIGVGLASMLSPMYIAELAP-AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASW--LNTDGWRYMF 203 (491)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHTTSC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTT--TTTTHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHhhCC-HHhhhhhHHhhhhhhhhhhhhhhhcchhhcccccccc--ccchhhHHHh
Confidence 3333 47778888888888899999986 7889999999999999998888777665554332211 1346788888
Q ss_pred HHHHHHHHHHHHHHHhhccCccccc---cc-cC-------------CC----chHHH---------HHHHHhhHHHHHHH
Q 014880 207 YSSIFIGCCFVGIFLSRTEEPRLKM---GL-RG-------------NS----HARIS---------WAYWFKKILYYQVA 256 (416)
Q Consensus 207 ~~~~~i~~~~~~~~~~~~~e~~~~~---~~-~~-------------~~----~~~~~---------~~~l~~~~~~~~~~ 256 (416)
.+..+..++..+. .+..||+++.. .+ ++ .+ +.++. ....++.++.....
T Consensus 204 ~~~~~~~~~~~~~-~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4gc0_A 204 ASECIPALLFLML-LYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGV 282 (491)
T ss_dssp HTTHHHHHHHHHH-GGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHH
T ss_pred hhhhhhhhhhhhh-hhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHH
Confidence 7776666555544 35566653210 00 00 00 00000 00111112222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHh
Q 014880 257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGIL 335 (416)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~ 335 (416)
...++..........++..++.+..+.+............+...++.++.+.+ +|++|| +.++.+.....++...+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr--~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 283 MLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK--PLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc--chhccchHHHHHHHHHHH
Confidence 22222222222233444445555566666555555555566677777776655 566665 555555555554443332
Q ss_pred --hcCCchhHHHHHHHHHHHHHHHH-HHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 336 --ILPMNMSAFMYVLAIFVGIANAL-MMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 336 --~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
.......+.......+...+.+. ..+..+.+..|..|.+.++ ...|+.+....+++.+++.+...+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~--~~~g~~~~~~~~~~~i~~~~~p~l 429 (491)
T 4gc0_A 361 TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG--KALAIAVAAQWLANYFVSWTFPMM 429 (491)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHH--HHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222222222222222 2355667788888988887 666777777777777776655433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=8.9e-11 Score=112.94 Aligned_cols=177 Identities=9% Similarity=-0.037 Sum_probs=122.0
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhccc--CCchhhHHhHHHHH
Q 014880 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLV 100 (416)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~--Grrk~~ll~~~~~~ 100 (416)
+..+...+..+...........++|.|+++. |.++.+.+++.++..+...++.++.|+++||+ |||+.++....+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 4445566666666677777788999999995 99999999999999999999999999999999 99887444333333
Q ss_pred HHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHH-HHHHH
Q 014880 101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSL 179 (416)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~-g~~l~ 179 (416)
.++...+.. ....+.+...... .+.+.+.+.......++..+..+ +++|++..++.+....+ |..++
T Consensus 332 ~~~~~~~~~-------~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~~~~ 399 (451)
T 1pw4_A 332 TIATIVYWM-------NPAGNPTVDMICM----IVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAA 399 (451)
T ss_dssp HHHHHHTTS-------CCTTCHHHHHHHH----HHHHHHHTHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------hcccCHHHHHHHH----HHHHHHHhchHHHHHHHHHHHhc-hhhhhhHHHHHHHHHHHHHHHHH
Confidence 244433321 1111222222222 24555555666666677888775 57899999999999999 99888
Q ss_pred HHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 014880 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLS 222 (416)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 222 (416)
+.+.+.+.. ..+|+..+.+.+++.++..+..++
T Consensus 400 ~~~~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 400 SAIVGYTVD----------FFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHH----------SSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------hcCcHHHHHHHHHHHHHHHHHHHH
Confidence 888777764 335677777766666555554443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.8e-09 Score=101.11 Aligned_cols=165 Identities=11% Similarity=-0.029 Sum_probs=106.5
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHH-HHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHH
Q 014880 24 WSVLYYGSGHMLNDITAACWFTYLLLF-LTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (416)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~-~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~ 101 (416)
++.+...+..+...........++|.| +++. |.++.+.+...++..+...++.++.|+++||+||||. +..+.+...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV-LAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHHHHH
Confidence 344445555555566666777889999 8887 9999999999999999999999999999999999887 444445444
Q ss_pred HHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHH
Q 014880 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (416)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~ 181 (416)
++...... . +........ .+.+++.+...+...++..+..+ ++|+...++.. ...+|..+++.
T Consensus 337 ~~~~~~~~-------~---~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~g~~~~~~ 399 (438)
T 3o7q_A 337 ALCLISAF-------A---GGHVGLIAL----TLCSAFMSIQYPTIFSLGIKNLG--QDTKYGSSFIV-MTIIGGGIVTP 399 (438)
T ss_dssp HHHHHHHH-------C---CHHHHHHHH----HHHHHHHTTHHHHHHHHHHSSCG--GGHHHHHHHHH-HTTHHHHHHHH
T ss_pred HHHHHHHH-------c---CCcHHHHHH----HHHHHHHHHHHHHHHHHHHhhcc--ccccchhhHHH-HHHHHHHHHHH
Confidence 44433321 1 111121222 24555566666666677676654 34777777665 45577777776
Q ss_pred HHHHHHHhccccccCchhhH-HHHHHHHHHHHHHHH
Q 014880 182 IAFIVFSVSTAKTHADLENQ-YRWIAYSSIFIGCCF 216 (416)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~ 216 (416)
+.+.+.. ..+ ++..+.+.+++.++.
T Consensus 400 ~~g~l~~----------~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 400 VMGFVSD----------AAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHH----------HHTSSGGGGHHHHHHHHHH
T ss_pred HHHHHHH----------HhcchHHHHHHHHHHHHHH
Confidence 6666653 334 555655554443333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.4e-09 Score=101.13 Aligned_cols=161 Identities=11% Similarity=0.035 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHh-C---CChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccc
Q 014880 42 CWFTYLLLFLTDI-G---LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (416)
Q Consensus 42 ~~~~~l~~~~~~~-g---~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~ 117 (416)
.....+|.|+++. + .+....|...++..+...++.++.|+++||+||||. +..+.....+....... .
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-l~~~~~~~~~~~~~~~~-------~ 309 (417)
T 2cfq_A 238 VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-LLLAGTIMSVRIIGSSF-------A 309 (417)
T ss_dssp HHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHTT-------C
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHHHHHHHHHH-------h
Confidence 3334577787764 3 235567888888888888899999999999999887 44555555554433221 1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHH-HHHHHHHHHHHHHHHHHHHHhccccccC
Q 014880 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVFSVSTAKTHA 196 (416)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~-~~~~~~g~~l~~~~~~~l~~~~~~~~~~ 196 (416)
.+....... ..+.+.+.+....+..++.+|..+ ++.|++..+.. +....+|..+++.+.+.+..
T Consensus 310 --~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~-------- 374 (417)
T 2cfq_A 310 --TSALEVVIL----KTLHMFEVPFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE-------- 374 (417)
T ss_dssp --CSHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH--------
T ss_pred --ccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH--------
Confidence 111211111 113334444444555677777775 67788877773 66667888777777665552
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 014880 197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEP 227 (416)
Q Consensus 197 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~ 227 (416)
..+++..+.+.+++.++..+..+...||+
T Consensus 375 --~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 375 --SIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp --HSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred --hcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 44677778877777776666655556653
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.6e-08 Score=96.94 Aligned_cols=149 Identities=15% Similarity=0.088 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cccchhhhhHHHHHHHHHHHHHHHHHHHH-HH-HhhhhHHHHHHH
Q 014880 251 LYYQVALVYMLTRLVVNVSQAYLAFYVIND-----LRMGQSAKALVPAIIYICSFIVSILLQEM-AW-TGQRLKAYYSAG 323 (416)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~-~~~r~~~~~~~~ 323 (416)
.++.+....++.....+....+++.|+.++ +|.+..+.+++.....++..++.++.|++ || +++| +.+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r--~~~~~~ 91 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR--PAVFWG 91 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH--HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch--HHHHHH
Confidence 455666677777778888888999999887 99999999999999999999999998877 45 4554 788888
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 014880 324 GVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~ 403 (416)
.++..++..+..+.+ +.+.+++..++.|++.+...+....+..+..|+++++.+...+..+....+|..+++.+.+.+
T Consensus 92 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 169 (491)
T 4aps_A 92 GVLIMLGHIVLALPF--GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAA 169 (491)
T ss_dssp HHHHHHHHHHHHSCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHH
Confidence 877777766665543 666777788899999999998888888888877663333666666666666666666655554
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.6e-08 Score=96.88 Aligned_cols=174 Identities=13% Similarity=0.014 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccc
Q 014880 42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST 121 (416)
Q Consensus 42 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (416)
....+.+.+.++.+.+............+...+..++.+.+.||+|||+. ++.+.....++...+.. . ......
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~-~~~~~~~~~~~~~~l~~---~--~~~~~~ 368 (491)
T 4gc0_A 295 VVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL-QIIGALGMAIGMFSLGT---A--FYTQAP 368 (491)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH-HHHHHHHHHHHHHHHHH---H--HHTTCC
T ss_pred HHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcch-hccchHHHHHHHHHHHH---H--Hhcccc
Confidence 33445555555668888777777777888888999999999999999887 44444444443322210 0 001111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh-hhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhh
Q 014880 122 LKVETISYCVFAAIFNVGWAATQV-AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 200 (416)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~ 200 (416)
......... ++..+++.... ....+.+|+.| .+.|++..++......+++.+++.+.+.+...... ....
T Consensus 369 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~E~fP-t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~----~~~~ 439 (491)
T 4gc0_A 369 GIVALLSML----FYVAAFAMSWGPVCWVLLSEIFP-NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL----VAHF 439 (491)
T ss_dssp HHHHHHHHH----HHHHHHHTTTTHHHHHHHHHSSC-TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH----HHHH
T ss_pred hHHHHHHHH----HHHHHHHhHHHHHHHHHHHHhCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhh
Confidence 111111111 22222222222 23466778875 67899999999888889988877666554322110 0123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 014880 201 QYRWIAYSSIFIGCCFVGIFLSRTEEPRLK 230 (416)
Q Consensus 201 ~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~ 230 (416)
++.+.+++.+++.++..++.+++.||++.+
T Consensus 440 ~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 440 HNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred hhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 445567777888888888888889997654
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.2e-08 Score=95.05 Aligned_cols=151 Identities=9% Similarity=-0.020 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------cchhhhhHHHHHHHHHHHHHHHHHHHH-HHH-hhhhHHHHH
Q 014880 250 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR------MGQSAKALVPAIIYICSFIVSILLQEM-AWT-GQRLKAYYS 321 (416)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~-~~r~~~~~~ 321 (416)
+.++.+.+..++.....+....+++.|+.+++| .+..+.+++.....++..++.++.|++ +|+ ++| +.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r--~~~~ 89 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY--NTIL 89 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH--HHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHH
Confidence 445666777777778888888999999999899 999999999988888889999888876 455 554 7777
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccc-hhhhhHHHHHHHHHHHHHHHHH
Q 014880 322 AGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGC-AFVCGTLSFLDKMSCGIAVYVL 400 (416)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~-g~~~~~~~~~~~~g~~ig~~l~ 400 (416)
++.++.+++..+..+.+ .+.+.+++..++.|++.+...+...++..+..|++++|. ...++..+....+|..+++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFE-HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766555543 256667777889999999998888888888888887761 1233336666777777776655
Q ss_pred hhh
Q 014880 401 QSY 403 (416)
Q Consensus 401 ~~~ 403 (416)
+.+
T Consensus 169 ~~l 171 (524)
T 2xut_A 169 PLL 171 (524)
T ss_dssp THH
T ss_pred HHH
Confidence 544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.3e-07 Score=84.90 Aligned_cols=144 Identities=10% Similarity=0.067 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHH
Q 014880 255 VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAG 333 (416)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~ 333 (416)
+.+..++...........+|.+ .+++|.++.+.++......++..++.++.|++ ||++| |+.+..+..+..++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~--r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGR--RPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCC--CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--chhHHHHHHHHHHHHHH
Confidence 3445555555666666666665 56689999999999888888888888888776 34444 47777777777777666
Q ss_pred HhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 014880 334 ILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (416)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g~~ig~~l~~~~~~ 405 (416)
..+.+ +.+.+++..++.|++.+...+....+..+..|+++++ ...+..+....+|..+++.+.+.+.+
T Consensus 82 ~~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~~ 149 (375)
T 2gfp_A 82 AVTTS--SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLR--HANSLLNMGILVSPLLAPLIGGLLDT 149 (375)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC--SHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhc--cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55543 7777778889999999998888888888888888877 67788888888888888777766544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 416 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.92 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.09 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.0 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=5.5e-28 Score=231.06 Aligned_cols=334 Identities=13% Similarity=0.031 Sum_probs=228.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhH
Q 014880 46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE 125 (416)
Q Consensus 46 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (416)
.+.++.+|.|+|++++|++.+++.+..++++++.|+++||+||||. +..+.+...++..+... .+ ....+....
T Consensus 46 ~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~-~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~ 119 (447)
T d1pw4a_ 46 LAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILAAAVMLFMGF--VP---WATSSIAVM 119 (447)
T ss_dssp HHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHHHHHHHHH--CH---HHHSSSSHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHhhccc--cc---hhhhhHHHH
Confidence 4445667779999999999999999999999999999999999987 55555555555433221 01 001122222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHH
Q 014880 126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWI 205 (416)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (416)
...+ .+.+++.+...++..+++.|+.+ +++|++..++.+.+..+|..+++.+...+... ..+||+.
T Consensus 120 -~~~~---~~~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~---------~~~w~~~ 185 (447)
T d1pw4a_ 120 -FVLL---FLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---------FNDWHAA 185 (447)
T ss_dssp -HHHH---HHHHHHHHHTHHHHHHHHHTTCT-TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---------TCCSTTC
T ss_pred -HHHH---HHHHHhhhhhhhHHHHHHHHHHH-hhcccccccccccccchhhhhhhhhhhhHhhh---------hhccccc
Confidence 2222 35667777777788888998885 67899999999999999998887776665543 3368888
Q ss_pred HHHHHHHHHHHHHHHHhhccCcccccc-----c-c-------------CCCchHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 014880 206 AYSSIFIGCCFVGIFLSRTEEPRLKMG-----L-R-------------GNSHARISWAYWFKKILYYQVALVYMLTRLVV 266 (416)
Q Consensus 206 ~~~~~~i~~~~~~~~~~~~~e~~~~~~-----~-~-------------~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 266 (416)
+++.+++.++..++.+...+|++.+.. + + +....+...++.++++.++......++.....
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (447)
T d1pw4a_ 186 LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR 265 (447)
T ss_dssp THHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhh
Confidence 888877777776666666665432110 0 0 00112234566788888888888888888888
Q ss_pred HHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHH-HHHHHHHHHHHHHHHHhhcCCchhHH
Q 014880 267 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKA-YYSAGGVLWVFCGAGILILPMNMSAF 344 (416)
Q Consensus 267 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (416)
+....+.|.|+.+..+.+..+.+....+..+..+++.++.+++ ++..++.+. .......+...+...+.....++.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (447)
T d1pw4a_ 266 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 345 (447)
T ss_dssp HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHH
T ss_pred hcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHH
Confidence 8889999999999999999888888888888888898888876 455444322 22222223333333333334456666
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhHHHHHHHHH-HHHHHHHHh
Q 014880 345 MYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMS-CGIAVYVLQ 401 (416)
Q Consensus 345 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~g-~~ig~~l~~ 401 (416)
..+..++.|++.+...+....+..+..|++.+| .+.|+.+....++ ..+++.+.+
T Consensus 346 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~~g~~~~~~~~g 401 (447)
T d1pw4a_ 346 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGYLGGSVAASAIVG 401 (447)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888877777777777888888888 6777766555543 333444443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=3.2e-23 Score=194.43 Aligned_cols=356 Identities=10% Similarity=0.027 Sum_probs=200.7
Q ss_pred CchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHH
Q 014880 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV 100 (416)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~ 100 (416)
+.++.+.++...+.....+....+++|.|++|. |+|++++|++.++..+...+.+|+.|+++||+||||+++ .+....
T Consensus 5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~-~~~~~~ 83 (417)
T d1pv7a_ 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL-WIITGM 83 (417)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH-HHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH-HHHHHH
Confidence 456677788888888888888899999999886 999999999999999999999999999999999999844 443333
Q ss_pred HHHHHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCC-CccchhHHHhHHHHHHHHHHHHH
Q 014880 101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITL-NSTSRVVLTSCRNAFTMVANLSL 179 (416)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~-~~~~r~~~~~~~~~~~~~g~~l~ 179 (416)
.++...... .+ .............. ..+...+....+......+... +.+++.+..+........+..++
T Consensus 84 ~~~~~~~~~--~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (417)
T d1pv7a_ 84 LVMFAPFFI--FI---FGPLLQYNILVGSI----VGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALG 154 (417)
T ss_dssp HHTHHHHHH--HT---HHHHHHTTCHHHHH----HTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hh---hhhhHHHHHHHHHH----HhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccc
Confidence 333222211 00 00000000011111 1111111111121111111111 12233444555556666666666
Q ss_pred HHHHHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHHhhccCccccccc------cCCCchHHHHHHHHhhHHHH
Q 014880 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL------RGNSHARISWAYWFKKILYY 253 (416)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~------~~~~~~~~~~~~l~~~~~~~ 253 (416)
+.+++.+. ..+|+..+........+......+..+|++.++++ ++++......++.++++..+
T Consensus 155 ~~~~~~l~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (417)
T d1pv7a_ 155 ASIVGIMF-----------TINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLW 223 (417)
T ss_dssp HHHHHHHH-----------HHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHH
T ss_pred cccccccc-----------cccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhccccccccccccccccccc
Confidence 66655554 33455555555555555555555555543322111 11222233444555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHH
Q 014880 254 QVALVYMLTRLVVNVSQAYLAFYVI---NDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWV 328 (416)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~r~--~~~~~~~~~~~~ 328 (416)
....................+.+.. ++.+.+....+.......++..++..+.+++ .||. ++.+.++..+.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~r~~~~~~~~~~~~~~~ 300 (417)
T d1pv7a_ 224 FLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLI---INRIGGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHH---HHHHCHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhh---hcccccccchhhhHHHHH
Confidence 4444333333333333333333332 2223344444455555555566666555544 4444 366677776666
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhhheeeeccccccchhhhhH-HH----HHHHHHHHHHHHHHhhh
Q 014880 329 FCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LS----FLDKMSCGIAVYVLQSY 403 (416)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~-~~----~~~~~g~~ig~~l~~~~ 403 (416)
++...+.+.+ +.+..++..++.|++.+...+...++..+..|++.+| ..+++ .+ ++..+|+.+++.+.|++
T Consensus 301 ~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~i~~~~~G~l~~~~ 376 (417)
T d1pv7a_ 301 VRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA--TIYLVCFCFFKQLAMIFMSVLAGNMYESI 376 (417)
T ss_dssp HHHHHHHTCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH--HHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhcccccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555554 6677777888999999999888888888888888887 45554 23 33445555556666665
Q ss_pred cc
Q 014880 404 QS 405 (416)
Q Consensus 404 ~~ 405 (416)
+.
T Consensus 377 g~ 378 (417)
T d1pv7a_ 377 GF 378 (417)
T ss_dssp CH
T ss_pred CH
Confidence 53
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=1.1e-09 Score=102.51 Aligned_cols=177 Identities=8% Similarity=-0.043 Sum_probs=107.2
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHH
Q 014880 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (416)
Q Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~ 103 (416)
..+......+...........+.+.|+.+. +.+..+.+....+..+...++.++.|+++||++||+.............
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 329 (447)
T d1pw4a_ 250 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 329 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHH
Confidence 334445555555556666677888999887 9999999999999999999999999999999998764222222221122
Q ss_pred HHHhhCCccCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccchhHHHhHHHHHHHH-HHHHHHHH
Q 014880 104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSLYAI 182 (416)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~-g~~l~~~~ 182 (416)
...... . .....+.+...+.. .+.+.+.+.......+...|..+ +++|++..++.+....+ |.++++.+
T Consensus 330 ~~~~~~---~--~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~~g~~~~~~~ 399 (447)
T d1pw4a_ 330 IATIVY---W--MNPAGNPTVDMICM----IVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAASAI 399 (447)
T ss_dssp HHHHHT---T--SCCTTCHHHHHHHH----HHHHHHHTHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---H--hcccccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 0 01122222222222 23444444555556667777765 67799999887776665 44555555
Q ss_pred HHHHHHhccccccCchhhHHHHHHHHHHHHHHHHHHHHH
Q 014880 183 AFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL 221 (416)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 221 (416)
.+.+.. ..||+..+.+.....++..++..
T Consensus 400 ~g~~~~----------~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 400 VGYTVD----------FFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHH----------SSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----------HhChHHHHHHHHHHHHHHHHHHH
Confidence 555553 44567666666555544444333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=8.7e-10 Score=101.43 Aligned_cols=148 Identities=11% Similarity=0.011 Sum_probs=104.2
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHhHHHHHHHHHHHhhCCccCcccccccchhhHHHHHHHHHH
Q 014880 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA 134 (416)
Q Consensus 55 g~s~~~~g~~~~~~~~~~~i~~p~~G~lsDr~Grrk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (416)
+.+....+.......+...+..++.|++.||+|||+. +..+.....++...... ..+.+...... .
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~----~ 320 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-LLLAGTIMSVRIIGSSF---------ATSALEVVILK----T 320 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHT---------CCCHHHHHHHH----H
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccc-hhhhHHHHHHhhhcccc---------ccccchhhHHH----H
Confidence 4566778888888999999999999999999999887 55555555554433321 11222222222 2
Q ss_pred HHHHHHHHHHhhhhhhhhccCCCccchhHHHhHH-HHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHHHHHHHHHH
Q 014880 135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIG 213 (416)
Q Consensus 135 ~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~-~~~~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 213 (416)
+.+++.+...++..+++.|..+ +++|++..+.. .....+|..+++.+.+.+. +..|++..+.+.+++.
T Consensus 321 l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~----------~~~g~~~~~~~~~~~~ 389 (417)
T d1pv7a_ 321 LHMFEVPFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIFMSVLAGNMY----------ESIGFQGAYLVLGLVA 389 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH----------HHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHCHHHHHHHHHHHH
Confidence 5667777777888888888875 67899888864 4456677777777766665 3567888988888888
Q ss_pred HHHHHHHHhhccCc
Q 014880 214 CCFVGIFLSRTEEP 227 (416)
Q Consensus 214 ~~~~~~~~~~~~e~ 227 (416)
++..++..+..|++
T Consensus 390 ~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 390 LGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHHHSCCS
T ss_pred HHHHHHHHHhhcCC
Confidence 87777777777664
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