Citrus Sinensis ID: 015014

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
Protein Sequence
MRSLSLSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQLKLE
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEccccccccccccccHHHHHHcccccccccccccccccccccccccEEEEEEcccEEEEEEccccccccccHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccEEEEccccccccccccccccccccHHHHccccccccccccEEEccccccccHHHHHHHcccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccccccccHHHHcHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEHHHHHcccccEEEcccHHHHccccccHHHHHHcccccccccHHHHcccHcccccccccEEEEEEcccEEEEEEccHHHHHHccHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccEEEccccEEEEcccEEEEEccEEEccccccEccccccccHHEcccccccccHEEEEEEccccccHHHHHHHHcccccEccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHcccc
Coil and Loop (DISEMBL)
mrslslslsvsQIFTKSSTLLFNQTTITRSQRHQSTCRFIrlsfcnpqtsgnsrTFATMAAAGAEEfvkgnvhpngvaviTLDRPKALNAMNLDMDIKYKSFLdewesdprvkcvliegsgprafcaGMDIKGVVAEIqkdrntplvpkvFTAEYSLICKIseykkpyislmdgvtmgfgigisghgryriVTEKTllampengiglfpdvgfsyiaakgpgggsvGAYLGMtgkristpsdalfaglgtdyvpsgnlgslKEALLAVTFSEDPHQDIVALLAKyssdpegeaplklllpqitscfssEKSVRQIIEELKKHQSSAETSVAQWADEALqgmgkgapfslcLTQKYFSKVAsahgktdnelsklsgvMKYEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQLKLE
Flexible Loop (DISEMBL)
mrslslslsvsqiftksstllfnqttitrsqrhQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIqkdrntplvpkvftAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAsahgktdnelsklsgvMKYEYRVALRSSLRSDFAEGVRAvlvdkdqvlsqlkle
Low Complexity Region (SEG)
MRSLSLSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQLKLE
Disordered region (IsUnstruct)
***********QIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY*********LKLLLPQITSCFS*************************WADEALQGMGKGAPFSLCLTQKYFSKVASAHG****ELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK**********
Disordered Region (DISOPRED)
*******************LLFN**********************************************GNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYS********LKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQVL******
Disordered Region (DISEMBL)
*********VSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEE***********VAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQLKLE
Disordered Region (DISPRO)
***LSLSLSVSQIFTKSSTLLFNQTTITRSQR*********************************EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQLKL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRSLSLSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQLKLE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	414	2.2.26 [Sep-21-2011]
Q9T0K7	421	3-hydroxyisobutyryl-CoA h	yes	no	0.929	0.914	0.708	1e-164
Q9LK08	418	3-hydroxyisobutyryl-CoA h	no	no	0.855	0.846	0.740	1e-157
Q8QZS1	385	3-hydroxyisobutyryl-CoA h	yes	no	0.734	0.789	0.388	6e-51
Q6NVY1	386	3-hydroxyisobutyryl-CoA h	yes	no	0.734	0.787	0.382	7e-51
Q5ZJ60	385	3-hydroxyisobutyryl-CoA h	yes	no	0.741	0.797	0.379	1e-49
Q5XIE6	385	3-hydroxyisobutyryl-CoA h	yes	no	0.736	0.792	0.384	3e-49
Q58EB4	382	3-hydroxyisobutyryl-CoA h	yes	no	0.823	0.892	0.363	5e-49
A2VDC2	385	3-hydroxyisobutyryl-CoA h	N/A	no	0.731	0.787	0.408	2e-48
Q28FR6	385	3-hydroxyisobutyryl-CoA h	yes	no	0.731	0.787	0.408	4e-48
Q9LKJ1	378	3-hydroxyisobutyryl-CoA h	no	no	0.748	0.820	0.365	9e-47

>sp|Q9T0K7|HIBC6_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=At4g13360 PE=1 SV=2

 Score =  579 bits (1492), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 279/394 (70%), Positives = 322/394 (81%), Gaps = 9/394 (2%)

Query: 13  IFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNV 72
           I T S  + F + + T S +   T RF         +  + R F+ MA AG ++FVKGNV
Sbjct: 4   IKTLSHRIFFPKFSQTFSSQFHQTLRF---------SISDRRKFSAMAGAGVDDFVKGNV 54

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
            PNGVA+ITLDR KALNAMNLDMDIKYKSFLDEWESDPRVKCV++EGS  RAFCAGMDIK
Sbjct: 55  FPNGVALITLDRTKALNAMNLDMDIKYKSFLDEWESDPRVKCVIVEGSTSRAFCAGMDIK 114

Query: 133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
           GV AEIQKD+NTPLV KVFTAEY+LIC I+ YKKPYISLMDG+TMGFG+G+SGHGRYR++
Sbjct: 115 GVAAEIQKDKNTPLVQKVFTAEYTLICAIAAYKKPYISLMDGITMGFGLGLSGHGRYRVI 174

Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
           TE+T+LAMPENGIGLFPDVGFSYIAA  PGGGSVGAYLG+TGKRIS PSDALF GLGT Y
Sbjct: 175 TERTVLAMPENGIGLFPDVGFSYIAAHSPGGGSVGAYLGLTGKRISAPSDALFVGLGTHY 234

Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSV 312
           VPS  L SLKEA+L+   SEDP+QDI A L+KYSS+PE EA LK LLP I S FSS KS+
Sbjct: 235 VPSEKLASLKEAILSANLSEDPNQDIQATLSKYSSNPESEAHLKSLLPHIESAFSSNKSI 294

Query: 313 RQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSK 372
           ++ IEELKK+Q S E+SV +WA+EAL+G+ KGAPFSL LTQKYFS VA A  K +NEL+ 
Sbjct: 295 KETIEELKKYQQSTESSVVEWANEALKGLEKGAPFSLYLTQKYFSNVACAKSKPENELAT 354

Query: 373 LSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
           L+GVMK EYR+ALRS+LR DFAEGVRAVL+DKDQ
Sbjct: 355 LNGVMKTEYRIALRSALRGDFAEGVRAVLIDKDQ 388

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -

>sp|Q9LK08|HIBC7_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial OS=Arabidopsis thaliana GN=At3g24360 PE=2 SV=1

 Score =  554 bits (1427), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 263/355 (74%), Positives = 306/355 (86%), Gaps = 1/355 (0%)

Query: 52  NSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPR 111
           + R F+ MA+ G++EFVKGNV+PNGVA+ITLDRPKALNAMNL+MD+KYKS LDEWE DP 
Sbjct: 32  HRRKFSVMAS-GSDEFVKGNVYPNGVALITLDRPKALNAMNLEMDLKYKSLLDEWEYDPG 90

Query: 112 VKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISL 171
           VKCV++EGS  RAFCAGMDIKGVVAEI  D+NT LV KVFTAEYSLICKI+ Y+KPYISL
Sbjct: 91  VKCVVVEGSTSRAFCAGMDIKGVVAEILMDKNTSLVQKVFTAEYSLICKIAGYRKPYISL 150

Query: 172 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 231
           MDG+TMGFG+G+SGHGRYR++TE+T+LAMPENGIGLFPDVGFSYIAA  PG GSVGAYLG
Sbjct: 151 MDGITMGFGLGLSGHGRYRVITERTVLAMPENGIGLFPDVGFSYIAAHSPGEGSVGAYLG 210

Query: 232 MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG 291
           MTG+RISTPSDALF GLGT YVPSG LGSL+EA+L+   S+DP Q I A L+ YSSDPE 
Sbjct: 211 MTGRRISTPSDALFVGLGTHYVPSGKLGSLREAILSADLSKDPQQHIQATLSNYSSDPET 270

Query: 292 EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCL 351
           E+ L++LLPQI S FS  KSV++ IEELKK Q S+E SVA+WA+EA+QG+ KGAPFSL L
Sbjct: 271 ESHLQMLLPQIESAFSVSKSVKETIEELKKFQQSSEASVAEWANEAVQGIEKGAPFSLYL 330

Query: 352 TQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
           T KYFSKVA A GKT+N ++ L+GVM  EYR+ALRS+LRSDF EGVRAVL DKDQ
Sbjct: 331 THKYFSKVACAKGKTNNAMATLNGVMITEYRIALRSALRSDFTEGVRAVLTDKDQ 385

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: -

>sp|Q8QZS1|HIBCH_MOUSE 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1

 Score =  201 bits (512), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 129/332 (38%), Positives = 189/332 (56%), Gaps = 28/332 (8%)

Query: 79  VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
           VITL+RPK LNA++L+M  +    L  WE DP    ++I+G+G +AFCAG DIK + +E 
Sbjct: 47  VITLNRPKFLNALSLNMIRQIYPQLKTWEQDPDTFLIIIKGAGGKAFCAGGDIKAL-SEA 105

Query: 139 QKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 198
           +K R   L   +F  EY L   I+  +KPY++L+DG+TMG G+G+S HG++R+ TE++L 
Sbjct: 106 KKARQN-LTQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLF 164

Query: 199 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 258
           AMPE GIGLFPDVG  Y   +    G +G +L +TG R+    D   AG+ T +V S  L
Sbjct: 165 AMPETGIGLFPDVGGGYFLPRLQ--GKLGYFLALTGYRLKG-RDVHRAGIATHFVDSEKL 221

Query: 259 GSLKEALLAVTFSEDPHQDIVALLAKYSS----DPEGEAPLKLLLPQITSCFSSEKSVRQ 314
             L+E LLA+       +D+  +L  Y +    D +     +  + +I SCFS+  +V Q
Sbjct: 222 RVLEEELLAL--KSPSAEDVAGVLESYHAKSKMDQDKSIIFEEHMDKINSCFSA-NTVEQ 278

Query: 315 IIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLS 374
           IIE L++  S        +A E ++ + K +P SL +T +   + +S           L 
Sbjct: 279 IIENLRQDGSP-------FAIEQMKVINKMSPTSLKITLRQLMEGSS---------KTLQ 322

Query: 375 GVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
            V+  EYR+        DF EGVRAVL+DKDQ
Sbjct: 323 EVLIMEYRITQACMEGHDFHEGVRAVLIDKDQ 354

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q6NVY1|HIBCH_HUMAN 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2

 Score =  201 bits (512), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 127/332 (38%), Positives = 190/332 (57%), Gaps = 28/332 (8%)

Query: 79  VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
           VITL+RPK LNA+ L+M  +    L +WE DP    ++I+G+G +AFCAG DI+ V++E 
Sbjct: 48  VITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIR-VISEA 106

Query: 139 QKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 198
           +K +   + P  F  EY L   +   +KPY++L+ G+TMG G+G+S HG++R+ TEK L 
Sbjct: 107 EKAKQK-IAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLF 165

Query: 199 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 258
           AMPE  IGLFPDVG  Y   +    G +G +L +TG R+    D   AG+ T +V S  L
Sbjct: 166 AMPETAIGLFPDVGGGYFLPRLQ--GKLGYFLALTGFRLKG-RDVYRAGIATHFVDSEKL 222

Query: 259 GSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ----ITSCFSSEKSVRQ 314
             L+E LLA+       ++I ++L  Y ++ + +     +L +    I SCFS+  +V +
Sbjct: 223 AMLEEDLLAL--KSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSA-NTVEE 279

Query: 315 IIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLS 374
           IIE L++  SS       +A E L+ + K +P SL +T +   + +S           L 
Sbjct: 280 IIENLQQDGSS-------FALEQLKVINKMSPTSLKITLRQLMEGSS---------KTLQ 323

Query: 375 GVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
            V+  EYR++       DF EGVRAVL+DKDQ
Sbjct: 324 EVLTMEYRLSQACMRGHDFHEGVRAVLIDKDQ 355

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q5ZJ60|HIBCH_CHICK 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1

 Score =  197 bits (501), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 185/335 (55%), Gaps = 28/335 (8%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           G  +ITL+RPK LNA++  M  +    +  WE DP    ++I+G+G +AFCAG D++ + 
Sbjct: 44  GAGIITLNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGTGEKAFCAGGDVRAI- 102

Query: 136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
           A+  K  +T +    F  EY L   I   KKPY++L+DG+TMG G+G+S HG +R+ TEK
Sbjct: 103 ADAGKAGDT-MTRDYFREEYRLDNAIGTCKKPYVALIDGITMGGGVGLSVHGHFRVATEK 161

Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255
           T+ AMPE  IGLFPDVG  Y   +    G +G  L +TG R+    D L AG+ T +V S
Sbjct: 162 TVFAMPETAIGLFPDVGGGYFLPR--LSGKIGHLLALTGFRLKG-RDVLKAGIATHFVES 218

Query: 256 GNLGSLKEALLAVTFSEDPHQDIVALLAKYSS----DPEGEAPLKLLLPQITSCFSSEKS 311
           G L  L++ L+A+       ++I  LL  Y      D E E  L   + +I S FS+  S
Sbjct: 219 GKLPELEKDLIAL--KSPSKENIADLLNSYHMQTKIDQEKEFVLDEHMERINSIFSA-NS 275

Query: 312 VRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELS 371
           + +I+++LK+  S        +A + L+ + K +P SL LT +   + A+          
Sbjct: 276 MEEIVQKLKQDGSP-------FATKQLEAINKMSPTSLKLTLRQLREGATM--------- 319

Query: 372 KLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
            L  V   EYR++       DF EGVRAVL+DKDQ
Sbjct: 320 SLQDVFTMEYRLSQACMRGHDFYEGVRAVLIDKDQ 354

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q5XIE6|HIBCH_RAT 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 128/333 (38%), Positives = 190/333 (57%), Gaps = 28/333 (8%)

Query: 78  AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAE 137
            VITL+RPK LNA++L+M  +    L +WE DP    ++I+G+G +AFCAG DIK + +E
Sbjct: 46  GVITLNRPKLLNALSLNMIRQIYPQLKKWERDPDTFLIIIKGAGGKAFCAGGDIKAL-SE 104

Query: 138 IQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTL 197
            +K   T L   +F  EY L   I+  +KPY++L+DG+TMG G+G+S HG++R+ TE++L
Sbjct: 105 AKKAGQT-LSQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSL 163

Query: 198 LAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGN 257
            AMPE GIGLFPDVG  Y   +    G +G +L +TG R+    D   AG+ T +V S  
Sbjct: 164 FAMPETGIGLFPDVGGGYFLPRLQ--GKLGYFLALTGFRLKG-RDVHRAGIATHFVDSEK 220

Query: 258 LGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLL----LPQITSCFSSEKSVR 313
           L  L+E LLA+       +D+  +L  Y +  +      ++    + +I SCFS+  +V 
Sbjct: 221 LHVLEEELLAL--KSPSAEDVAGVLESYHAKSKMGQDKSIIFEEHMDKINSCFSA-NTVE 277

Query: 314 QIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKL 373
           QI+E L++  S        +A E ++ + K +P SL +T     ++     KT      L
Sbjct: 278 QILENLRQDGSP-------FAMEQIKVINKMSPTSLKIT---LRQLMEGSTKT------L 321

Query: 374 SGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
             V+  EYR+        DF EGVRAVL+DKDQ
Sbjct: 322 QEVLTMEYRLTQACMEGHDFHEGVRAVLIDKDQ 354

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q58EB4|HIBCH_DANRE 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio GN=hibch PE=2 SV=1

 Score =  195 bits (496), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 197/385 (51%), Gaps = 44/385 (11%)

Query: 27  ITRSQRHQSTCRFIRLS-FCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRP 85
            T +QR +S CR  R+        +G+   F  +  AG               VITL+RP
Sbjct: 6   FTSAQRLRSVCRLQRIHGHMMSSKAGSEVLFEKVGKAG---------------VITLNRP 50

Query: 86  KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145
           KALNA+ L+M       L +W+ D     V+I+G+G +AFCAG DI+ + AE  K  N  
Sbjct: 51  KALNALTLNMIRHIYPQLKKWDKDSETDIVIIKGAGEKAFCAGGDIRAI-AEAGKAGN-- 107

Query: 146 LVPKVF-TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG 204
           L+ +VF   EY L   I  Y+KPY++L++G+TMG G+G+S HG++R+ TEKTL AMPE G
Sbjct: 108 LLSQVFFREEYILNNTIGTYQKPYVALINGITMGGGVGLSVHGQFRVATEKTLFAMPETG 167

Query: 205 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEA 264
           IGLFPDVG  Y   +    G +G +L +TG R+    D    G+ T +V S  + SL++ 
Sbjct: 168 IGLFPDVGGGYFLPRLQ--GKLGLFLALTGFRLKG-RDVQRVGVATHFVQSEKIESLEKD 224

Query: 265 LLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS---SEKSVRQIIEELKK 321
           L  V        D+  LL  Y      +A    +L + T       S  SV +I+E LKK
Sbjct: 225 L--VDLKSPSISDVAQLLDSYQEQSHLDAEKPFVLQEQTEAIDRLFSAGSVEEIVENLKK 282

Query: 322 HQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEY 381
             S+       +A +  + + K +P SL LT +   + A            L  V   EY
Sbjct: 283 DGSA-------FALKQAETLAKMSPTSLKLTFRQIEEGARM---------SLQEVFMMEY 326

Query: 382 RVALRSSLRSDFAEGVRAVLVDKDQ 406
           R++       DF EGVRAVL+DKDQ
Sbjct: 327 RLSQACMNGHDFYEGVRAVLIDKDQ 351

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|A2VDC2|HIBCH_XENLA 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis GN=hibch PE=2 SV=1

 Score =  193 bits (490), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 137/335 (40%), Positives = 186/335 (55%), Gaps = 32/335 (9%)

Query: 78  AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV-A 136
            VITL+RPKALNA+NL M  +    L  WE DP    V+I+G+G +AFCAG DI+ V  A
Sbjct: 46  GVITLNRPKALNALNLGMIRQIYPQLKLWEEDPETYLVIIKGAGGKAFCAGGDIRAVTDA 105

Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
               DR   L    F  EY L   I   KKPY++++DG+TMG G+G+S HG +R+ +EKT
Sbjct: 106 GKVGDR---LAQDFFREEYILNNAIGTCKKPYVAVIDGITMGGGVGLSVHGHFRVASEKT 162

Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
           L AMPE  IGLFPDVG  Y   +    G +G YL +TG R+   SD   AG+ T +V S 
Sbjct: 163 LFAMPETAIGLFPDVGGGYFLPRLT--GKLGLYLALTGFRLKG-SDVQKAGIATHFVESE 219

Query: 257 NLGSLKEALLAVTFSEDPHQDIVA-LLAKYS--SDPEGEAPLKLL--LPQITSCFSSEKS 311
            L SL++ L+A+   + P ++ VA +L  Y   S    + P  L   + +I S FS   +
Sbjct: 220 KLSSLEQDLVAM---KSPSKENVADVLDSYQKKSYAAQDKPFVLAENMDKINSLFSG-NT 275

Query: 312 VRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELS 371
           V +I+E LK   SS       +A + LQ +   +P SL +T +   + AS          
Sbjct: 276 VEEIMENLKCDGSS-------FAMKQLQTLSTMSPTSLKITFRQLKEGASM--------- 319

Query: 372 KLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
            L  V+  EYR++       DF EGVRAVL+DKDQ
Sbjct: 320 SLQEVLTMEYRLSQACMNGHDFYEGVRAVLIDKDQ 354

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q28FR6|HIBCH_XENTR 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1

 Score =  192 bits (488), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 137/335 (40%), Positives = 185/335 (55%), Gaps = 32/335 (9%)

Query: 78  AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV-A 136
            VITL+RPKALNA+NL M       L  WE DP    V+I+G G +AFCAG DI+ V  A
Sbjct: 46  GVITLNRPKALNALNLGMIRLIYPQLGLWEEDPETYLVIIKGVGGKAFCAGGDIRAVTDA 105

Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
               DR   L    F  EY L   I  YKKPY++L+DG+TMG G+G+S HG +R+ +E T
Sbjct: 106 GKAGDR---LAQDFFREEYILNNAIGTYKKPYVALIDGITMGGGVGLSVHGHFRVASENT 162

Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
           L AMPE  IGLFPDVG  Y   + P  G +G YL +TG R+   SD   AG+ T +V S 
Sbjct: 163 LFAMPETAIGLFPDVGGGYFLPRLP--GKLGLYLALTGFRLKG-SDVQKAGIATHFVESE 219

Query: 257 NLGSLKEALLAVTFSEDPHQDIVA-LLAKYSSDPEG--EAPLKLL--LPQITSCFSSEKS 311
            + SL++ L+A+   + P ++ VA +L  Y +      + P  L   L +I S FS+  S
Sbjct: 220 KIPSLEQDLVAM---KCPSKENVADVLDSYHNKSYAAQDKPFVLAEHLDKINSLFSA-SS 275

Query: 312 VRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELS 371
           V  IIE L+   SS       +A + LQ +   +P SL +T +   + +S          
Sbjct: 276 VEAIIENLRCDGSS-------FALKQLQTLSTMSPTSLKITFRQLKEGSSM--------- 319

Query: 372 KLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
            L  V+  EYR++       DF EGVRAVL+DK+Q
Sbjct: 320 SLQEVLTMEYRLSQACMKGYDFYEGVRAVLIDKNQ 354

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q9LKJ1|HIBC1_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana GN=CHY1 PE=1 SV=1

 Score =  187 bits (476), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 122/334 (36%), Positives = 180/334 (53%), Gaps = 24/334 (7%)

Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V ++TL+RPK LNA++  M  +       +E DP VK V+++G G RAFCAG D+  VV 
Sbjct: 19  VRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVR 77

Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
           +I +  N  L    F++EY L   ++ Y K  +S+++G+ MG G G+S HGR+RI TE T
Sbjct: 78  DINQG-NWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENT 136

Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
           + AMPE  +GLFPDVG SY  ++ P  G  G Y+G+TG R+   ++ L  GL T +VPS 
Sbjct: 137 VFAMPETALGLFPDVGASYFLSRLP--GFFGEYVGLTGARLDG-AEMLACGLATHFVPST 193

Query: 257 NLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE-GEAPLKLLLPQITSCFSSEKSVRQI 315
            L +L EA L    S DP      +L  Y+  P   +      L  I  CF S ++V +I
Sbjct: 194 RLTAL-EADLCRINSNDP-TFASTILDAYTQHPRLKQQSAYRRLDVIDRCF-SRRTVEEI 250

Query: 316 IEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSG 375
           I  L++    A      W    +Q + KG+P SL ++ +            +  L  +  
Sbjct: 251 ISALERE---ATQEADGWISATIQALKKGSPASLKISLRSIR---------EGRLQGVGQ 298

Query: 376 VMKYEYRV---ALRSSLRSDFAEGVRAVLVDKDQ 406
            +  EYR+    ++  +  DF EG RA+LVDKD+
Sbjct: 299 CLIREYRMVCHVMKGEISKDFVEGCRAILVDKDK 332

Involved in valine catabolism. May be indirectly involved in benzoic acid biosynthesis and in cold signaling and cold tolerance.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
449443139	424	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.937	0.915	0.730	1e-170
359484612	425	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.946	0.922	0.751	1e-168
224088081	380	predicted protein [Populus trichocarpa]	0.840	0.915	0.807	1e-167
118489716	382	unknown [Populus trichocarpa x Populus d	0.838	0.908	0.809	1e-167
356513119	408	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.871	0.884	0.775	1e-165
356524057	408	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.871	0.884	0.769	1e-164
297738862	407	unnamed protein product [Vitis vinifera]	0.840	0.855	0.764	1e-163
255549046	416	3-hydroxybutyryl-CoA dehydratase, putati	0.925	0.920	0.699	1e-163
79473201	421	3-hydroxyisobutyryl-CoA hydrolase-like p	0.929	0.914	0.708	1e-163
297790718	418	hypothetical protein ARALYDRAFT_332986 [	0.857	0.849	0.769	1e-162

>gi|449443139|ref|XP_004139338.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like [Cucumis sativus] gi|449518115|ref|XP_004166089.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like [Cucumis sativus]

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 293/401 (73%), Positives = 332/401 (82%), Gaps = 13/401 (3%)

Query: 6   LSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAE 65
           L  + SQ   KSSTL  +QT  + +  H  +    R            RT A MA    +
Sbjct: 5   LGFTASQFLFKSSTLPLSQTLPSLTLFHIHSNSVSR------------RTLAAMAGTD-D 51

Query: 66  EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF 125
           +FVKG+VHPNGVAVITLDRPKALNAMNLDMDI+YK +LDEWE DPRVKCVL+EGS  RAF
Sbjct: 52  QFVKGSVHPNGVAVITLDRPKALNAMNLDMDIQYKKYLDEWEEDPRVKCVLVEGSSSRAF 111

Query: 126 CAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG 185
           CAGMDIKGVVAEIQKD+NT LV KVFTAEYSLICKIS YKKPY+S MDG+TMGFGIG+SG
Sbjct: 112 CAGMDIKGVVAEIQKDKNTSLVQKVFTAEYSLICKISNYKKPYLSFMDGITMGFGIGLSG 171

Query: 186 HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALF 245
           HGRYRI+TE+TLLAMPENGIGLFPDVGFSYIAA+GPG GSVGAYLG+TG+RIS+PSDAL+
Sbjct: 172 HGRYRIITERTLLAMPENGIGLFPDVGFSYIAAQGPGEGSVGAYLGLTGRRISSPSDALY 231

Query: 246 AGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC 305
            GLGT YVPSGNLGSLKE LL  TFSEDPHQDI  LLAKYSSDPE    LKLLLPQITS 
Sbjct: 232 VGLGTHYVPSGNLGSLKEGLLTATFSEDPHQDINTLLAKYSSDPESPPSLKLLLPQITSS 291

Query: 306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK 365
           F + KSV++ +EELKKHQ  + +SV +WA E+LQG+GKGAPFSL LTQKYFSKVA+AHGK
Sbjct: 292 FGTNKSVKETVEELKKHQLDSSSSVVEWAKESLQGIGKGAPFSLALTQKYFSKVAAAHGK 351

Query: 366 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
           +++ELS L+GVM+ EYR+ALRSSLR+DFAEGVRAVLVDKDQ
Sbjct: 352 SNDELSTLNGVMRTEYRIALRSSLRNDFAEGVRAVLVDKDQ 392

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484612|ref|XP_003633131.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like isoform 2 [Vitis vinifera]

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 305/406 (75%), Positives = 336/406 (82%), Gaps = 14/406 (3%)

Query: 1   MRSLSLSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMA 60
           MRSL   +  SQ+  +SSTL   +   + SQ          L F   +TS + R  ATMA
Sbjct: 1   MRSL---VGASQLLNRSSTLFLFRGPKSHSQY---------LHFG--KTSSSLRGLATMA 46

Query: 61  AAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS 120
           AA AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDI+YK FLDEWE DP VKCVL+EGS
Sbjct: 47  AAAAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIRYKKFLDEWEMDPMVKCVLVEGS 106

Query: 121 GPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFG 180
             RAF AGMDIKGVVAEIQKD+ TPLV KVFTAEYSLICKISEYKKPYISLMDG+TMGFG
Sbjct: 107 SSRAFSAGMDIKGVVAEIQKDKTTPLVQKVFTAEYSLICKISEYKKPYISLMDGITMGFG 166

Query: 181 IGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTP 240
           IG+SGHGRYRIVTE+TLLAMPENGIGLFPDVGF+YIAA+ PG GSVGAYLGMTGKRIST 
Sbjct: 167 IGLSGHGRYRIVTERTLLAMPENGIGLFPDVGFAYIAAQSPGEGSVGAYLGMTGKRISTS 226

Query: 241 SDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP 300
           +DAL+ GLGT YVPSGNL SLKEALL  +FSEDPHQDI  LL KYS DPE EA LKLLLP
Sbjct: 227 ADALYVGLGTHYVPSGNLSSLKEALLTTSFSEDPHQDIRELLVKYSHDPESEAQLKLLLP 286

Query: 301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA 360
           QI S FS++KSV +IIEELKKHQ S +  V++WA EAL G+GKGAPFSLCLTQK+FS+VA
Sbjct: 287 QIVSTFSADKSVNEIIEELKKHQLSTDAIVSEWAKEALLGLGKGAPFSLCLTQKHFSRVA 346

Query: 361 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
            A GK D++L  LSGVMK EYR+ALRSSLR+DFAEGVRAVLVDKDQ
Sbjct: 347 LARGKNDSDLCSLSGVMKTEYRIALRSSLRNDFAEGVRAVLVDKDQ 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088081|ref|XP_002308317.1| predicted protein [Populus trichocarpa] gi|222854293|gb|EEE91840.1| predicted protein [Populus trichocarpa]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 281/348 (80%), Positives = 311/348 (89%)

Query: 59  MAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE 118
           MAAA  +EFVKGN+HPNGVAV+TLDRPKALNAMNLDMDIKYK+F+DEWESDPRV+CVL+E
Sbjct: 1   MAAAAVDEFVKGNIHPNGVAVLTLDRPKALNAMNLDMDIKYKTFMDEWESDPRVRCVLVE 60

Query: 119 GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMG 178
           GS PRAFCAGMDIKGVVAEI+KD+NTP+V KVFTAEYSLICKISEYKKPY+SLMDGVTMG
Sbjct: 61  GSSPRAFCAGMDIKGVVAEIRKDKNTPVVQKVFTAEYSLICKISEYKKPYVSLMDGVTMG 120

Query: 179 FGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIS 238
           FGIG+SGHGRYRIVTE+T+LAMPENGIGLFPDVGFSYIAAK PG GSVG YL +TGKRIS
Sbjct: 121 FGIGLSGHGRYRIVTERTVLAMPENGIGLFPDVGFSYIAAKSPGEGSVGNYLALTGKRIS 180

Query: 239 TPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLL 298
           TPSDALF GLG+ YVPSGNL  LKEALL +TFS DPHQDI ALLA+Y  DPE E+ LK L
Sbjct: 181 TPSDALFVGLGSHYVPSGNLVQLKEALLQITFSNDPHQDINALLAEYGHDPESESQLKSL 240

Query: 299 LPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSK 358
           LP+I S F   KSV +IIE+LK HQ SA+  V +WA++ALQG+GKGAPFSLCLTQKYFS+
Sbjct: 241 LPRIISTFGPNKSVEEIIEKLKSHQLSADRKVVEWANDALQGIGKGAPFSLCLTQKYFSR 300

Query: 359 VASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
           VA A GK  NELS LSGVMK EYR+ALRSSLR+DFAEGVRAVLVDKDQ
Sbjct: 301 VAFAFGKISNELSTLSGVMKTEYRIALRSSLRNDFAEGVRAVLVDKDQ 348

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489716|gb|ABK96659.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 281/347 (80%), Positives = 309/347 (89%)

Query: 60  AAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEG 119
           AAA  +EFVKGN+HPNGVAV+TLDRPKALNAMNLDMDIKYK+F+DEWESDPRVKCVL+EG
Sbjct: 4   AAAAVDEFVKGNIHPNGVAVLTLDRPKALNAMNLDMDIKYKTFMDEWESDPRVKCVLVEG 63

Query: 120 SGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGF 179
           S PRAFCAGMDIKGVVAEIQKD+NTP+V KVFTAEYSLICKISEYKKPY+SLMDGVTMGF
Sbjct: 64  SSPRAFCAGMDIKGVVAEIQKDKNTPVVQKVFTAEYSLICKISEYKKPYVSLMDGVTMGF 123

Query: 180 GIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIST 239
           GIG+SGHGRYRIVTE+T+LAMPENGIGLFPDVGFSYIAAK PG GSVG YL +TGKRIST
Sbjct: 124 GIGLSGHGRYRIVTERTVLAMPENGIGLFPDVGFSYIAAKSPGEGSVGNYLALTGKRIST 183

Query: 240 PSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLL 299
           PSDALF GLG+ YVPSGNL  LKEALL +TFS DPHQDI +LLA+Y  DPE E+ LK LL
Sbjct: 184 PSDALFVGLGSHYVPSGNLVQLKEALLQITFSNDPHQDINSLLAEYGHDPESESQLKSLL 243

Query: 300 PQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV 359
           P+I S F   KSV +IIE LK HQ SA+  V +WA++ALQG+GKGAPFSLCLTQKYFS+V
Sbjct: 244 PRIISTFGPNKSVEEIIEMLKSHQMSADPKVVEWANDALQGIGKGAPFSLCLTQKYFSRV 303

Query: 360 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
           A A GK  NELS LSGVMK EYR+ALRSSLR+DFAEGVRAVLVDKDQ
Sbjct: 304 AFAFGKISNELSTLSGVMKTEYRIALRSSLRNDFAEGVRAVLVDKDQ 350

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513119|ref|XP_003525261.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like isoform 1 [Glycine max]

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 283/365 (77%), Positives = 314/365 (86%), Gaps = 4/365 (1%)

Query: 42  LSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKS 101
           L+F   Q S + R F+ MA    EEFVKG VH NGVAVITLDRPKALNAMNLDMD+KYKS
Sbjct: 15  LTFSRFQPSFSLRAFSAMA----EEFVKGTVHQNGVAVITLDRPKALNAMNLDMDVKYKS 70

Query: 102 FLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKI 161
           +LDEWESDPRVKCVL++ S PRAFCAGMDIKGVVAEIQKD+NTPLV KVFTAEYSLICKI
Sbjct: 71  YLDEWESDPRVKCVLVDSSSPRAFCAGMDIKGVVAEIQKDKNTPLVQKVFTAEYSLICKI 130

Query: 162 SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP 221
           S+YKKPYIS MDG+TMGFGIG+SGHGRYRI+TE+T+LAMPENGIGLFPDVGF++IAA+ P
Sbjct: 131 SDYKKPYISFMDGITMGFGIGLSGHGRYRIITERTVLAMPENGIGLFPDVGFAHIAAQSP 190

Query: 222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 281
           G GSVGAYLG+TGKRISTPSDA++ GLGT YVPSG LGS KEALLA  FS+DPHQDI  L
Sbjct: 191 GEGSVGAYLGLTGKRISTPSDAIYLGLGTHYVPSGKLGSFKEALLATNFSQDPHQDIKVL 250

Query: 282 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGM 341
           LA+Y S+PE EA LKLLLPQI S F   KSV +IIEELKKHQSS + +V +WA+EALQG+
Sbjct: 251 LARYESNPESEAQLKLLLPQIVSTFGGNKSVTEIIEELKKHQSSTDPNVVEWANEALQGL 310

Query: 342 GKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVL 401
           GKGAPFSL LT KYFS VASA G  D ELS LSGVMK EYR+ALRSSLR DF+EGVRAVL
Sbjct: 311 GKGAPFSLFLTYKYFSLVASAVGNNDGELSTLSGVMKTEYRIALRSSLRHDFSEGVRAVL 370

Query: 402 VDKDQ 406
           V KDQ
Sbjct: 371 VAKDQ 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524057|ref|XP_003530649.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like [Glycine max]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 281/365 (76%), Positives = 315/365 (86%), Gaps = 4/365 (1%)

Query: 42  LSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKS 101
           L+F   Q S + R F+ MA    EEFVKG+VH NGVAVITLDRPKALNAMNLDMD+KYKS
Sbjct: 15  LTFSRFQPSFSLRAFSAMA----EEFVKGSVHQNGVAVITLDRPKALNAMNLDMDVKYKS 70

Query: 102 FLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKI 161
           +LDEWESDPRVKCVL++ S PRAFCAGMDIKGVVAEIQKD+NTPLV KVFTAEYSLICKI
Sbjct: 71  YLDEWESDPRVKCVLVDSSSPRAFCAGMDIKGVVAEIQKDKNTPLVQKVFTAEYSLICKI 130

Query: 162 SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP 221
           S+YKKPYIS MDG+TMGFGIG+SGHGRYRI+TE+T+LAMPENGIGLFPDVGF+YIAA+ P
Sbjct: 131 SDYKKPYISFMDGITMGFGIGLSGHGRYRIITERTVLAMPENGIGLFPDVGFAYIAAQSP 190

Query: 222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 281
           G GSVGAYLG+TGKRISTPSDA++AGLGT YVPSG LGS K+ALLA  FS+DPHQDI  L
Sbjct: 191 GEGSVGAYLGLTGKRISTPSDAIYAGLGTHYVPSGKLGSFKDALLATNFSQDPHQDIKVL 250

Query: 282 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGM 341
           LA+Y S+PE EA LKLLLPQ+ S F   KSV +IIEELKKHQSS + +V +WA+EALQG+
Sbjct: 251 LARYESNPESEAQLKLLLPQLVSTFGGNKSVTEIIEELKKHQSSTDPNVVEWANEALQGL 310

Query: 342 GKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVL 401
            KGAPFSL LT KYFS VASA G  D  LS LSGVM+ EYR+ALRSSLR DF+EGVRAVL
Sbjct: 311 RKGAPFSLFLTNKYFSSVASAVGNNDGGLSTLSGVMETEYRIALRSSLRHDFSEGVRAVL 370

Query: 402 VDKDQ 406
           VDKDQ
Sbjct: 371 VDKDQ 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738862|emb|CBI28107.3| unnamed protein product [Vitis vinifera]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 286/374 (76%), Positives = 310/374 (82%), Gaps = 26/374 (6%)

Query: 59  MAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE 118
           MAAA AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDI+YK FLDEWE DP VKCVL+E
Sbjct: 1   MAAAAAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIRYKKFLDEWEMDPMVKCVLVE 60

Query: 119 GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPK--------------------------VFT 152
           GS  RAF AGMDIKGVVAEIQKD+ TPLV K                          VFT
Sbjct: 61  GSSSRAFSAGMDIKGVVAEIQKDKTTPLVQKCHFHFYIPCGDVKQISARKQLSYVIEVFT 120

Query: 153 AEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVG 212
           AEYSLICKISEYKKPYISLMDG+TMGFGIG+SGHGRYRIVTE+TLLAMPENGIGLFPDVG
Sbjct: 121 AEYSLICKISEYKKPYISLMDGITMGFGIGLSGHGRYRIVTERTLLAMPENGIGLFPDVG 180

Query: 213 FSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSE 272
           F+YIAA+ PG GSVGAYLGMTGKRIST +DAL+ GLGT YVPSGNL SLKEALL  +FSE
Sbjct: 181 FAYIAAQSPGEGSVGAYLGMTGKRISTSADALYVGLGTHYVPSGNLSSLKEALLTTSFSE 240

Query: 273 DPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQ 332
           DPHQDI  LL KYS DPE EA LKLLLPQI S FS++KSV +IIEELKKHQ S +  V++
Sbjct: 241 DPHQDIRELLVKYSHDPESEAQLKLLLPQIVSTFSADKSVNEIIEELKKHQLSTDAIVSE 300

Query: 333 WADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSD 392
           WA EAL G+GKGAPFSLCLTQK+FS+VA A GK D++L  LSGVMK EYR+ALRSSLR+D
Sbjct: 301 WAKEALLGLGKGAPFSLCLTQKHFSRVALARGKNDSDLCSLSGVMKTEYRIALRSSLRND 360

Query: 393 FAEGVRAVLVDKDQ 406
           FAEGVRAVLVDKDQ
Sbjct: 361 FAEGVRAVLVDKDQ 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549046|ref|XP_002515579.1| 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis] gi|223545523|gb|EEF47028.1| 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 284/406 (69%), Positives = 333/406 (82%), Gaps = 23/406 (5%)

Query: 1   MRSLSLSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMA 60
           MRSL   +S S++ +KS+ L     +    ++   +CR                TFA MA
Sbjct: 1   MRSL---VSASRLVSKSAILFTESASSFSFRKSYLSCR----------------TFAIMA 41

Query: 61  AAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS 120
           +A ++ FVKGNVH NGVAVITLDRPKALNAMNLDMD+KYKSFLDEWESDPRVKCVL+EGS
Sbjct: 42  SASSDNFVKGNVHQNGVAVITLDRPKALNAMNLDMDVKYKSFLDEWESDPRVKCVLVEGS 101

Query: 121 GPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFG 180
            PRAFCAG D+K + ++ Q       + +VFTAEYSLICKIS+YKKPYIS MDG+TMGFG
Sbjct: 102 SPRAFCAGGDVKAITSKNQLSH----MIEVFTAEYSLICKISDYKKPYISFMDGITMGFG 157

Query: 181 IGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTP 240
           +G+SGHGRYR+VTE+T+LAMPENGIGLFPDVGFSYIAA  PG GSVGAYLG+TGKRISTP
Sbjct: 158 LGLSGHGRYRVVTERTVLAMPENGIGLFPDVGFSYIAAHSPGEGSVGAYLGLTGKRISTP 217

Query: 241 SDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP 300
           SDALF GLGT +VPSGNLGS+KEAL ++TFS+DP+ DI ALLAKYS++PE EA LKLLLP
Sbjct: 218 SDALFVGLGTHFVPSGNLGSVKEALFSMTFSQDPNDDIKALLAKYSNEPESEAELKLLLP 277

Query: 301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA 360
           QI S FS+  SV++I EELKKHQ SA+T VA+WA +ALQG+GKGAPFSLCLTQKYFSKVA
Sbjct: 278 QIISTFSASNSVKEITEELKKHQQSADTKVAEWASDALQGLGKGAPFSLCLTQKYFSKVA 337

Query: 361 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
           SA+GK ++ELS L+GVMK EYR+ALRSSLR+DFAEGVRAVLVDKDQ
Sbjct: 338 SAYGKPNSELSTLNGVMKTEYRIALRSSLRNDFAEGVRAVLVDKDQ 383

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79473201|ref|NP_193072.2| 3-hydroxyisobutyryl-CoA hydrolase-like protein 3 [Arabidopsis thaliana] gi|334302821|sp|Q9T0K7.2|HIBC6_ARATH RecName: Full=3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial; Flags: Precursor gi|332657870|gb|AEE83270.1| 3-hydroxyisobutyryl-CoA hydrolase-like protein 3 [Arabidopsis thaliana]

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 279/394 (70%), Positives = 322/394 (81%), Gaps = 9/394 (2%)

Query: 13  IFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNV 72
           I T S  + F + + T S +   T RF         +  + R F+ MA AG ++FVKGNV
Sbjct: 4   IKTLSHRIFFPKFSQTFSSQFHQTLRF---------SISDRRKFSAMAGAGVDDFVKGNV 54

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
            PNGVA+ITLDR KALNAMNLDMDIKYKSFLDEWESDPRVKCV++EGS  RAFCAGMDIK
Sbjct: 55  FPNGVALITLDRTKALNAMNLDMDIKYKSFLDEWESDPRVKCVIVEGSTSRAFCAGMDIK 114

Query: 133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
           GV AEIQKD+NTPLV KVFTAEY+LIC I+ YKKPYISLMDG+TMGFG+G+SGHGRYR++
Sbjct: 115 GVAAEIQKDKNTPLVQKVFTAEYTLICAIAAYKKPYISLMDGITMGFGLGLSGHGRYRVI 174

Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
           TE+T+LAMPENGIGLFPDVGFSYIAA  PGGGSVGAYLG+TGKRIS PSDALF GLGT Y
Sbjct: 175 TERTVLAMPENGIGLFPDVGFSYIAAHSPGGGSVGAYLGLTGKRISAPSDALFVGLGTHY 234

Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSV 312
           VPS  L SLKEA+L+   SEDP+QDI A L+KYSS+PE EA LK LLP I S FSS KS+
Sbjct: 235 VPSEKLASLKEAILSANLSEDPNQDIQATLSKYSSNPESEAHLKSLLPHIESAFSSNKSI 294

Query: 313 RQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSK 372
           ++ IEELKK+Q S E+SV +WA+EAL+G+ KGAPFSL LTQKYFS VA A  K +NEL+ 
Sbjct: 295 KETIEELKKYQQSTESSVVEWANEALKGLEKGAPFSLYLTQKYFSNVACAKSKPENELAT 354

Query: 373 LSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
           L+GVMK EYR+ALRS+LR DFAEGVRAVL+DKDQ
Sbjct: 355 LNGVMKTEYRIALRSALRGDFAEGVRAVLIDKDQ 388

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790718|ref|XP_002863244.1| hypothetical protein ARALYDRAFT_332986 [Arabidopsis lyrata subsp. lyrata] gi|297309078|gb|EFH39503.1| hypothetical protein ARALYDRAFT_332986 [Arabidopsis lyrata subsp. lyrata]

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 273/355 (76%), Positives = 310/355 (87%)

Query: 52  NSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPR 111
           + R F+ MA AG ++FVKGNV PNGVA+ITLDR KALNAMNLDMDIKYKSFLDEWESDPR
Sbjct: 31  DRRKFSAMAGAGVDDFVKGNVFPNGVALITLDRTKALNAMNLDMDIKYKSFLDEWESDPR 90

Query: 112 VKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISL 171
           VKCV++EGS PRAFCAGMDIKGV AEIQKD+NTPLV KVFTAEY+LIC I+ YKKPYISL
Sbjct: 91  VKCVIVEGSTPRAFCAGMDIKGVAAEIQKDKNTPLVQKVFTAEYTLICAIAGYKKPYISL 150

Query: 172 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 231
           MDG+TMGFG+G+SGHGRYR++TE+T+LAMPENGIGLFPDVGFSYIAA  PGGGSVGAYLG
Sbjct: 151 MDGITMGFGLGLSGHGRYRVITERTVLAMPENGIGLFPDVGFSYIAAHSPGGGSVGAYLG 210

Query: 232 MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG 291
           +TGKRISTPSDALF GLGT YVPS  + SLKEA+L+   S DP+QDI A L+KYS + E 
Sbjct: 211 LTGKRISTPSDALFVGLGTHYVPSEKIASLKEAILSANLSGDPNQDIQATLSKYSGNLES 270

Query: 292 EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCL 351
           EA LK LLPQI S FSS KSV++ IEELKK+Q S E SV +WA+EAL+G+ KGAPFSL L
Sbjct: 271 EAHLKSLLPQIESAFSSNKSVKETIEELKKYQRSTEPSVVEWANEALKGLEKGAPFSLYL 330

Query: 352 TQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
           TQKYFS VASA GKT+NEL+ L+GVMK EYR+ALRS+LR DFAEGVRAVL+DKDQ
Sbjct: 331 TQKYFSNVASAKGKTENELATLNGVMKTEYRIALRSALRGDFAEGVRAVLIDKDQ 385

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
TAIR|locus:2142050	421	AT4G13360 [Arabidopsis thalian	0.929	0.914	0.708	2.5e-145
TAIR|locus:2087218	418	AT3G24360 [Arabidopsis thalian	0.850	0.842	0.745	2.1e-139
TAIR|locus:2152069	378	CHY1 "beta-hydroxyisobutyryl-C	0.760	0.833	0.357	1.2e-44
TIGR_CMR|CBU_1856	379	CBU_1856 "enoyl-CoA hydratase/	0.637	0.696	0.395	2.2e-43
FB|FBgn0038326	386	CG5044 [Drosophila melanogaste	0.611	0.655	0.397	1.2e-42
TAIR|locus:2054437	378	AT2G30660 [Arabidopsis thalian	0.760	0.833	0.342	3.2e-42
MGI|MGI:1923792	385	Hibch "3-hydroxyisobutyryl-Coe	0.644	0.693	0.385	5.2e-42
ASPGD|ASPL0000005013	505	AN6844 [Emericella nidulans (t	0.751	0.615	0.342	5.2e-42
UNIPROTKB|Q6NVY1	386	HIBCH "3-hydroxyisobutyryl-CoA	0.647	0.694	0.379	6.6e-42
UNIPROTKB|Q5ZJ60	385	HIBCH "3-hydroxyisobutyryl-CoA	0.652	0.701	0.378	1.4e-41

TAIR|locus:2142050 AT4G13360 [Arabidopsis thaliana (taxid:3702)]

 Score = 1420 (504.9 bits), Expect = 2.5e-145, P = 2.5e-145
 Identities = 279/394 (70%), Positives = 322/394 (81%)

Query:    13 IFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNV 72
             I T S  + F + + T S +   T RF         +  + R F+ MA AG ++FVKGNV
Sbjct:     4 IKTLSHRIFFPKFSQTFSSQFHQTLRF---------SISDRRKFSAMAGAGVDDFVKGNV 54

Query:    73 HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
              PNGVA+ITLDR KALNAMNLDMDIKYKSFLDEWESDPRVKCV++EGS  RAFCAGMDIK
Sbjct:    55 FPNGVALITLDRTKALNAMNLDMDIKYKSFLDEWESDPRVKCVIVEGSTSRAFCAGMDIK 114

Query:   133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             GV AEIQKD+NTPLV KVFTAEY+LIC I+ YKKPYISLMDG+TMGFG+G+SGHGRYR++
Sbjct:   115 GVAAEIQKDKNTPLVQKVFTAEYTLICAIAAYKKPYISLMDGITMGFGLGLSGHGRYRVI 174

Query:   193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
             TE+T+LAMPENGIGLFPDVGFSYIAA  PGGGSVGAYLG+TGKRIS PSDALF GLGT Y
Sbjct:   175 TERTVLAMPENGIGLFPDVGFSYIAAHSPGGGSVGAYLGLTGKRISAPSDALFVGLGTHY 234

Query:   253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSV 312
             VPS  L SLKEA+L+   SEDP+QDI A L+KYSS+PE EA LK LLP I S FSS KS+
Sbjct:   235 VPSEKLASLKEAILSANLSEDPNQDIQATLSKYSSNPESEAHLKSLLPHIESAFSSNKSI 294

Query:   313 RQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSK 372
             ++ IEELKK+Q S E+SV +WA+EAL+G+ KGAPFSL LTQKYFS VA A  K +NEL+ 
Sbjct:   295 KETIEELKKYQQSTESSVVEWANEALKGLEKGAPFSLYLTQKYFSNVACAKSKPENELAT 354

Query:   373 LSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
             L+GVMK EYR+ALRS+LR DFAEGVRAVL+DKDQ
Sbjct:   355 LNGVMKTEYRIALRSALRGDFAEGVRAVLIDKDQ 388

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2087218 AT3G24360 [Arabidopsis thaliana (taxid:3702)]

 Score = 1364 (485.2 bits), Expect = 2.1e-139, P = 2.1e-139
 Identities = 263/353 (74%), Positives = 305/353 (86%)

Query:    54 RTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVK 113
             R F+ MA+ G++EFVKGNV+PNGVA+ITLDRPKALNAMNL+MD+KYKS LDEWE DP VK
Sbjct:    34 RKFSVMAS-GSDEFVKGNVYPNGVALITLDRPKALNAMNLEMDLKYKSLLDEWEYDPGVK 92

Query:   114 CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD 173
             CV++EGS  RAFCAGMDIKGVVAEI  D+NT LV KVFTAEYSLICKI+ Y+KPYISLMD
Sbjct:    93 CVVVEGSTSRAFCAGMDIKGVVAEILMDKNTSLVQKVFTAEYSLICKIAGYRKPYISLMD 152

Query:   174 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 233
             G+TMGFG+G+SGHGRYR++TE+T+LAMPENGIGLFPDVGFSYIAA  PG GSVGAYLGMT
Sbjct:   153 GITMGFGLGLSGHGRYRVITERTVLAMPENGIGLFPDVGFSYIAAHSPGEGSVGAYLGMT 212

Query:   234 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEA 293
             G+RISTPSDALF GLGT YVPSG LGSL+EA+L+   S+DP Q I A L+ YSSDPE E+
Sbjct:   213 GRRISTPSDALFVGLGTHYVPSGKLGSLREAILSADLSKDPQQHIQATLSNYSSDPETES 272

Query:   294 PLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQ 353
              L++LLPQI S FS  KSV++ IEELKK Q S+E SVA+WA+EA+QG+ KGAPFSL LT 
Sbjct:   273 HLQMLLPQIESAFSVSKSVKETIEELKKFQQSSEASVAEWANEAVQGIEKGAPFSLYLTH 332

Query:   354 KYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
             KYFSKVA A GKT+N ++ L+GVM  EYR+ALRS+LRSDF EGVRAVL DKDQ
Sbjct:   333 KYFSKVACAKGKTNNAMATLNGVMITEYRIALRSALRSDFTEGVRAVLTDKDQ 385

GO:0003824 "catalytic activity" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2152069 CHY1 "beta-hydroxyisobutyryl-CoA hydrolase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 119/333 (35%), Positives = 182/333 (54%)

Query:    75 NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             + V ++TL+RPK LNA++  M  +       +E DP VK V+++G G RAFCAG D+  V
Sbjct:    17 SSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAV 75

Query:   135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             V +I +  N  L    F++EY L   ++ Y K  +S+++G+ MG G G+S HGR+RI TE
Sbjct:    76 VRDINQG-NWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATE 134

Query:   195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 254
              T+ AMPE  +GLFPDVG SY  ++ PG    G Y+G+TG R+   ++ L  GL T +VP
Sbjct:   135 NTVFAMPETALGLFPDVGASYFLSRLPG--FFGEYVGLTGARLDG-AEMLACGLATHFVP 191

Query:   255 SGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE-GEAPLKLLLPQITSCFSSEKSVR 313
             S  L +L+  L  +  S DP      +L  Y+  P   +      L  I  CFS  ++V 
Sbjct:   192 STRLTALEADLCRIN-SNDP-TFASTILDAYTQHPRLKQQSAYRRLDVIDRCFS-RRTVE 248

Query:   314 QIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKL 373
             +II  L++ +++ E     W    +Q + KG+P SL ++ +   +     G+       L
Sbjct:   249 EIISALER-EATQEAD--GWISATIQALKKGSPASLKISLRSIRE-----GRLQGVGQCL 300

Query:   374 SGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
                 +    V ++  +  DF EG RA+LVDKD+
Sbjct:   301 IREYRMVCHV-MKGEISKDFVEGCRAILVDKDK 332

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IGI;IDA

GO:0006574 "valine catabolic process" evidence=NAS;IMP

GO:0006635 "fatty acid beta-oxidation" evidence=TAS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

TIGR_CMR|CBU_1856 CBU_1856 "enoyl-CoA hydratase/isomerase family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 113/286 (39%), Positives = 165/286 (57%)

Query:    80 ITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQ 139
             ITL+RPKALNA+  DM  +    L  WESD  +K V+I+G+G RAFCAG DI+ +    +
Sbjct:    45 ITLNRPKALNALTGDMCRRLHEQLLGWESDRTIKAVVIKGAGDRAFCAGGDIRTLYMNGK 104

Query:   140 KDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA 199
             +   T    K F  EY +   I  +KKPYI+L+DG+TMG G G+S HG +R+ TE+ L A
Sbjct:   105 EHLQT--AQKFFYDEYRMNAAIFHFKKPYIALLDGITMGGGAGVSVHGSHRVATEQLLFA 162

Query:   200 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG 259
             MPE  IG FPDVG  Y  ++     ++G YLG+TG RI    DA + GL    +PS    
Sbjct:   163 MPETAIGFFPDVGAGYFLSRCKN--NMGYYLGLTGDRIGA-GDAKWLGLVNHVIPSEKQD 219

Query:   260 SLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ---ITSCFSSEKSVRQII 316
             +L EAL +  FS + H+ +  ++ ++S + E   PL  L  Q   I SCF++E SV  I+
Sbjct:   220 ALIEALASAPFSSEDHRQVTDIITEFSIELE---PL--LFNQKTLIESCFAAE-SVEAIV 273

Query:   317 EELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA 362
               L++          +W+   L+ +   +P SL +T ++ ++ ASA
Sbjct:   274 SRLEERNE-------EWSKTVLETLLSKSPTSLKVTYEHLTR-ASA 311

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

GO:0016853 "isomerase activity" evidence=ISS

FB|FBgn0038326 CG5044 [Drosophila melanogaster (taxid:7227)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 109/274 (39%), Positives = 160/274 (58%)

Query:    79 VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
             +I L+RPKALNA+NL+M  K    L + E    +  V+I+G+G +AFCAG D++ +V   
Sbjct:    57 MIILNRPKALNAINLEMVRKIYKHLKKCEKSKSL--VIIKGTGDKAFCAGGDVRALVEAG 114

Query:   139 QKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 198
               D +       F  EYS    I  YK PYI+++DG+TMG G+G+S HG+YR+ +++TL 
Sbjct:   115 PTDESKSF----FREEYSTNALIGNYKIPYIAIIDGITMGGGVGLSVHGKYRVASDRTLF 170

Query:   199 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 258
             AMPE  IGLFPDVG SY   +  G   +G YLG+TG R+   +D  ++G+ T Y  S  +
Sbjct:   171 AMPETAIGLFPDVGGSYFLPRLQG--KLGLYLGLTGYRLRG-ADVYYSGIATHYCESSKI 227

Query:   259 GSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEE 318
               L+ ALL    ++D    +  LL KY S PE    L+ +L QI   FS++ SV  I+E 
Sbjct:   228 PDLETALLNCPDADD----VPELLQKYHSPPEKPFSLQPVLEQINKNFSAD-SVEGILEN 282

Query:   319 LKKHQSSAETSVAQWADEALQGMGKGAPFSLCLT 352
             L+   S       +WA + L+ + K +P S+ +T
Sbjct:   283 LQNDGS-------EWAKKTLETLSKMSPTSMKVT 309

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2054437 AT2G30660 [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 114/333 (34%), Positives = 183/333 (54%)

Query:    75 NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             + V ++TL+RPK LNA+  +M  +       +E DP VK V+++G G RAFCAG D+  V
Sbjct:    13 SSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQG-RAFCAGGDVPPV 71

Query:   135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             V  + + +   L    F  +Y+L   ++ Y KP +S+++G+ MG G G+S HGR+RI TE
Sbjct:    72 VQNMVQGK-WRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSIHGRFRIATE 130

Query:   195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 254
              T+ AMPE  +GLFPDVG SY  ++ PG    G Y+G+TG R+   ++ L  GL T +VP
Sbjct:   131 NTVFAMPETSLGLFPDVGASYFLSRLPG--FFGEYVGLTGARLDG-AELLACGLATHFVP 187

Query:   255 SGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE-GEAPLKLLLPQITSCFSSEKSVR 313
             S  L +L+  L  V  S DP   +  +L  Y+  P   +      L  I  CFS ++++ 
Sbjct:   188 STRLTALETDLCKVG-SSDP-SFVSTILDAYTQHPHLKQKSAYHRLDVIDRCFS-KRTME 244

Query:   314 QIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKL 373
             +II  L++ +++ E     W+   ++ + K +P SL ++ +   +     G+       L
Sbjct:   245 EIISALER-ETTQELD--DWSLTTIRALKKSSPSSLKISLRSIRE-----GRLQGVGHCL 296

Query:   374 SGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
             +   +    V ++  L  D  EG RA+L+DKD+
Sbjct:   297 TREYRMVCHV-MKGDLSKDLVEGCRAILIDKDR 328

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

MGI|MGI:1923792 Hibch "3-hydroxyisobutyryl-Coenzyme A hydrolase" [Mus musculus (taxid:10090)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 111/288 (38%), Positives = 171/288 (59%)

Query:    79 VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
             VITL+RPK LNA++L+M  +    L  WE DP    ++I+G+G +AFCAG DIK + +E 
Sbjct:    47 VITLNRPKFLNALSLNMIRQIYPQLKTWEQDPDTFLIIIKGAGGKAFCAGGDIKAL-SEA 105

Query:   139 QKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 198
             +K R   L   +F  EY L   I+  +KPY++L+DG+TMG G+G+S HG++R+ TE++L 
Sbjct:   106 KKARQN-LTQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLF 164

Query:   199 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 258
             AMPE GIGLFPDVG  Y   +  G   +G +L +TG R+    D   AG+ T +V S  L
Sbjct:   165 AMPETGIGLFPDVGGGYFLPRLQG--KLGYFLALTGYRLKG-RDVHRAGIATHFVDSEKL 221

Query:   259 GSLKEALLAVTFSEDPH-QDIVALLAKYSSDPEGEAPLKLL----LPQITSCFSSEKSVR 313
               L+E LLA+   + P  +D+  +L  Y +  + +    ++    + +I SCFS+  +V 
Sbjct:   222 RVLEEELLAL---KSPSAEDVAGVLESYHAKSKMDQDKSIIFEEHMDKINSCFSAN-TVE 277

Query:   314 QIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 361
             QIIE L++  S        +A E ++ + K +P SL +T +   + +S
Sbjct:   278 QIIENLRQDGSP-------FAIEQMKVINKMSPTSLKITLRQLMEGSS 318

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009083 "branched-chain amino acid catabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

ASPGD|ASPL0000005013 AN6844 [Emericella nidulans (taxid:162425)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 115/336 (34%), Positives = 174/336 (51%)

Query:    76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
             GV ++ L+RPK LN++N  M  K    L EWE       +++ G+G +A CAG D+  + 
Sbjct:    69 GVRLVELNRPKKLNSLNGSMVRKILPRLKEWEKSQLANIIMVAGAGTKALCAGGDVAALA 128

Query:   136 AEIQKD-RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
              + +K           F  EY L   I+ Y KP+IS+MDG+TMG G+G+S H  +RI TE
Sbjct:   129 LQNEKGPEGQQASTDFFGLEYKLDHVIATYSKPFISVMDGITMGGGVGLSVHAPFRIATE 188

Query:   195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 254
             +T+ AMPE  IG FPDVG S+   +  G   +G YL +T  R+ T   AL+AG+ T Y  
Sbjct:   189 RTVFAMPETTIGFFPDVGGSFFLPRLDG--EIGTYLALTSARL-TGVQALYAGIATHYFD 245

Query:   255 SGNLGSLKEALLAVTFSEDP----HQDIV-ALLAKYSSD-PEGEAPLKLLLPQITSCFSS 308
             S  LG+L + L  + F +        D++   +A++++  PE       L   I  CF  
Sbjct:   246 SSVLGNLTQRLSELVFRDSATLQERLDLINRTMAEFATGLPEEPQLAGQLRSAIDRCFRH 305

Query:   309 EKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDN 368
             + +V QI++ L++     E    +WA E L+ M + +P SL +  +   +V  A G    
Sbjct:   306 D-TVEQIMKALER-----EKKCKKWAQETLETMSQRSPTSLKVALRQM-RVGQAWG---- 354

Query:   369 ELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK 404
                 +    + EY +A R     DF EGV+A L+ K
Sbjct:   355 ----IRETFQREYEIAARFMQHPDFVEGVKARLMSK 386

GO:0005739 "mitochondrion" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|Q6NVY1 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 109/287 (37%), Positives = 168/287 (58%)

Query:    79 VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
             VITL+RPK LNA+ L+M  +    L +WE DP    ++I+G+G +AFCAG DI+ V++E 
Sbjct:    48 VITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIR-VISEA 106

Query:   139 QKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 198
             +K +   + P  F  EY L   +   +KPY++L+ G+TMG G+G+S HG++R+ TEK L 
Sbjct:   107 EKAKQK-IAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLF 165

Query:   199 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 258
             AMPE  IGLFPDVG  Y   +  G   +G +L +TG R+    D   AG+ T +V S  L
Sbjct:   166 AMPETAIGLFPDVGGGYFLPRLQG--KLGYFLALTGFRLKG-RDVYRAGIATHFVDSEKL 222

Query:   259 GSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ----ITSCFSSEKSVRQ 314
               L+E LLA+       ++I ++L  Y ++ + +     +L +    I SCFS+  +V +
Sbjct:   223 AMLEEDLLAL--KSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSAN-TVEE 279

Query:   315 IIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 361
             IIE L++  SS       +A E L+ + K +P SL +T +   + +S
Sbjct:   280 IIENLQQDGSS-------FALEQLKVINKMSPTSLKITLRQLMEGSS 319

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0006574 "valine catabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0009083 "branched-chain amino acid catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q5ZJ60 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 110/291 (37%), Positives = 167/291 (57%)

Query:    76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
             G  +ITL+RPK LNA++  M  +    +  WE DP    ++I+G+G +AFCAG D++ + 
Sbjct:    44 GAGIITLNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGTGEKAFCAGGDVRAI- 102

Query:   136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
             A+  K  +T +    F  EY L   I   KKPY++L+DG+TMG G+G+S HG +R+ TEK
Sbjct:   103 ADAGKAGDT-MTRDYFREEYRLDNAIGTCKKPYVALIDGITMGGGVGLSVHGHFRVATEK 161

Query:   196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255
             T+ AMPE  IGLFPDVG  Y   +    G +G  L +TG R+    D L AG+ T +V S
Sbjct:   162 TVFAMPETAIGLFPDVGGGYFLPRL--SGKIGHLLALTGFRLKG-RDVLKAGIATHFVES 218

Query:   256 GNLGSLKEALLAVTFSEDPHQDIVA-LLAKYSS----DPEGEAPLKLLLPQITSCFSSEK 310
             G L  L++ L+A+   + P ++ +A LL  Y      D E E  L   + +I S FS+  
Sbjct:   219 GKLPELEKDLIAL---KSPSKENIADLLNSYHMQTKIDQEKEFVLDEHMERINSIFSAN- 274

Query:   311 SVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 361
             S+ +I+++LK+  S        +A + L+ + K +P SL LT +   + A+
Sbjct:   275 SMEEIVQKLKQDGSP-------FATKQLEAINKMSPTSLKLTLRQLREGAT 318

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0006574 "valine catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LK08	HIBC7_ARATH	3, ., 1, ., 2, ., -	0.7408	0.8550	0.8468	no	no
Q58EB4	HIBCH_DANRE	3, ., 1, ., 2, ., 4	0.3636	0.8236	0.8926	yes	no
Q9T0K7	HIBC6_ARATH	3, ., 1, ., 2, ., -	0.7081	0.9299	0.9144	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.2	0.766
3rd Layer	3.1.2.4	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	414
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	1e-109
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	1e-56
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	1e-52
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	6e-44
PLN02851	407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	1e-42
PLN02157	401	PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol	2e-42
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	2e-36
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	1e-24
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	6e-22
pfam13766	117	pfam13766, ECH_C, 2-enoyl-CoA Hydratase C-terminal	1e-20
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	2e-19
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	4e-17
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	1e-16
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	6e-16
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	3e-15
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	2e-14
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	4e-14
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	1e-13
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	5e-13
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	6e-13
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	1e-12
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	2e-12
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	3e-12
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	9e-12
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	2e-11
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	3e-11
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	4e-11
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	1e-10
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	4e-10
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	4e-10
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	6e-10
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	8e-10
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	1e-09
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	2e-09
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	2e-09
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	2e-09
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	2e-09
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	2e-09
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	3e-09
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	3e-09
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	7e-09
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	3e-08
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	4e-08
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	4e-08
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	5e-08
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	7e-08
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	9e-08
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	9e-08
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	1e-07
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	1e-07
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	2e-07
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	3e-07
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	5e-07
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	7e-07
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	9e-07
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	9e-07
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	2e-06
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	3e-06
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	4e-06
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	7e-06
PRK07112	255	PRK07112, PRK07112, polyketide biosynthesis enoyl-	4e-05
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	5e-05
PLN03214	278	PLN03214, PLN03214, probable enoyl-CoA hydratase/i	5e-05
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	8e-05
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	9e-05
COG0447	282	COG0447, MenB, Dihydroxynaphthoic acid synthase [C	1e-04
PRK07396	273	PRK07396, PRK07396, dihydroxynaphthoic acid synthe	3e-04
PRK08321	302	PRK08321, PRK08321, naphthoate synthase; Validated	9e-04
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	0.001
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	0.002
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	0.002
PRK06213	229	PRK06213, PRK06213, enoyl-CoA hydratase; Provision	0.002

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score =  324 bits (833), Expect = e-109
 Identities = 135/334 (40%), Positives = 189/334 (56%), Gaps = 27/334 (8%)

Query: 75  NGVAVITLDRPKALNAMNLDM--DIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
            GV VITL+RPKALNA++L+M   I     LD WE D  V  V+IEG+G R FCAG DI+
Sbjct: 11  GGVGVITLNRPKALNALSLEMIRAIDAA--LDAWEDDDAVAAVVIEGAGERGFCAGGDIR 68

Query: 133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
            +  E  +  +     + F  EY L   I+ Y KPYI+LMDG+ MG G+GIS HG +RIV
Sbjct: 69  AL-YEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIV 127

Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
           TE+T +AMPE GIG FPDVG +Y  ++ PG   +G YL +TG RIS  +DAL+AGL   +
Sbjct: 128 TERTKMAMPETGIGFFPDVGGTYFLSRAPGA--LGTYLALTGARIS-AADALYAGLADHF 184

Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSV 312
           VPS +L +L +AL+++ +       + A LA +++       L      I  CF+ + +V
Sbjct: 185 VPSADLPALLDALISLRWDSGA-DVVDAALAAFATPAPAS-ELAAQRAWIDECFAGD-TV 241

Query: 313 RQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSK 372
             II  L+           ++A +    +   +P SL +T     ++  A G T      
Sbjct: 242 EDIIAALEADGG-------EFAAKTADTLRSRSPTSLKVT---LEQLRRARGLT------ 285

Query: 373 LSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
           L   ++ E R+AL      DF EGVRAVL+DKD+
Sbjct: 286 LEECLRRELRLALAMLRSPDFVEGVRAVLIDKDR 319

Length = 342

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  190 bits (484), Expect = 1e-56
 Identities = 115/353 (32%), Positives = 191/353 (54%), Gaps = 27/353 (7%)

Query: 57  ATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVL 116
           A      AEE V G      V VITL+RP+ LN ++L +      FL++WE D  V+ ++
Sbjct: 2   AQQVQNPAEEVVLGEEK-GRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELII 60

Query: 117 IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVT 176
           I+G+G RAF AG D+K +  + ++  ++ L  +V    Y L   I  YKK  ++L+ G+ 
Sbjct: 61  IKGAG-RAFSAGGDLK-MFYDGRESDDSCL--EVVYRMYWLCYHIHTYKKTQVALVHGLV 116

Query: 177 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKR 236
           MG G G+    ++R+VTEKT+ A PE  +G   D GFSYI ++ P  G +G YL +TG R
Sbjct: 117 MGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLP--GHLGEYLALTGAR 174

Query: 237 ISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLK 296
           ++   + +  GL T +VPS  L  L++ LL +   ++    +   + ++S D + +    
Sbjct: 175 LNG-KEMVACGLATHFVPSEKLPELEKRLLNLNSGDE--SAVQEAIEEFSKDVQADEDSI 231

Query: 297 L-LLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKY 355
           L     I  CFS + +V +II+     +S A  +  +W  E L+G+ + +P  L +T + 
Sbjct: 232 LNKQSWINECFSKD-TVEEIIKAF---ESEASKTGNEWIKETLKGLRRSSPTGLKITLRS 287

Query: 356 FSKVASAHGKTDNELSKLSGVMKYEYRV---ALRSSLRSDFAEGVRAVLVDKD 405
             +     G+  +    L+  +K E+R+    LRS++  D  EG+RA+++DKD
Sbjct: 288 IRE-----GRKQS----LAECLKKEFRLTMNILRSTVSDDVYEGIRALVIDKD 331

Length = 379

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score =  180 bits (457), Expect = 1e-52
 Identities = 123/343 (35%), Positives = 181/343 (52%), Gaps = 38/343 (11%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V ++TL+RPK LNA++  M  +       +E DP VK V+++G G RAFCAG D+  V
Sbjct: 17  SSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAV 75

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
           V +I++  N  L    F+ EY L   ++ Y K  +S+++G+ MG G G+S HGR+RI TE
Sbjct: 76  VRDIEQG-NWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATE 134

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 254
            T+ AMPE  +GLFPDVG SY  ++ P  G  G Y+G+TG R+   ++ L  GL T +VP
Sbjct: 135 NTVFAMPETALGLFPDVGASYFLSRLP--GFFGEYVGLTGARLDG-AEMLACGLATHFVP 191

Query: 255 SGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ--------ITSCF 306
           S  L +L EA L    S DP      +L  Y+  P        L PQ        I  CF
Sbjct: 192 STRLTAL-EADLCRIGSNDP-TFASTILDAYTQHPR-------LKPQSAYHRLDVIDRCF 242

Query: 307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKT 366
            S ++V +II  L++    A      W    +Q + K +P SL ++ +            
Sbjct: 243 -SRRTVEEIISALERE---ATQEADGWISATIQALKKASPASLKISLRSIR--------- 289

Query: 367 DNELSKLSGVMKYEYRV---ALRSSLRSDFAEGVRAVLVDKDQ 406
           +  L  +   +  EYR+    ++  +  DF EG RA+LVDKD+
Sbjct: 290 EGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILVDKDK 332

Length = 381

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  151 bits (384), Expect = 6e-44
 Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 6/186 (3%)

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
              GVA ITL+RP+  NA++L+M  +  + LDE E+DP V+ V++ G+G +AFCAG D+K
Sbjct: 5   RDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAG-KAFCAGADLK 63

Query: 133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
            + A                    L+  +    KP I+ ++G  +G G+ ++     RI 
Sbjct: 64  ELAALSDAG---EEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIA 120

Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            E     +PE  +GL P  G +    +   G +    L +TG+RIS   +AL  GL  + 
Sbjct: 121 AEDAKFGLPEVKLGLVPGGGGTQRLPRLV-GPARARELLLTGRRIS-AEEALELGLVDEV 178

Query: 253 VPSGNL 258
           VP   L
Sbjct: 179 VPDEEL 184

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  153 bits (389), Expect = 1e-42
 Identities = 110/329 (33%), Positives = 171/329 (51%), Gaps = 26/329 (7%)

Query: 82  LDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD 141
           L+RP +LNA+ + M  + K   + WE +P +  VL++GSG RAFC+G D+  +   +  +
Sbjct: 57  LNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGADVVSL-YHLINE 114

Query: 142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 201
            N       F   Y  +     Y KP +++MDG+TMG G GIS  G +R+VT+KT+ A P
Sbjct: 115 GNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHP 174

Query: 202 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSL 261
           E  +G  PD G SY  ++ P  G +G YL +TG++++   + +  GL T Y  +  L  L
Sbjct: 175 EVQMGFHPDAGASYYLSRLP--GYLGEYLALTGQKLNG-VEMIACGLATHYCLNARL-PL 230

Query: 262 KEALLAVTFSEDPHQDIVALLAKYSS--DPEGEAPLKLLLPQITSCFSSEKSVRQIIEEL 319
            E  L    ++DP   I   LA+Y     P+  + L   +  I  CF  + +V +IIE L
Sbjct: 231 IEERLGKLLTDDPAV-IEDSLAQYGDLVYPDKSSVLH-KIETIDKCFGHD-TVEEIIEAL 287

Query: 320 KKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKY 379
              ++ A +S  +W  +AL+ + + +P SL +T +            +     L   +  
Sbjct: 288 ---ENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIR---------EGRFQTLDQCLAR 335

Query: 380 EYRVAL---RSSLRSDFAEGVRAVLVDKD 405
           EYR++L      +  DF EGVRA LVDKD
Sbjct: 336 EYRISLCGVSKWVSGDFCEGVRARLVDKD 364

Length = 407

>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  153 bits (388), Expect = 2e-42
 Identities = 109/331 (32%), Positives = 179/331 (54%), Gaps = 28/331 (8%)

Query: 82  LDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD 141
           L+RP ALNA+   M  + +     WE DP +  V+++GSG RAFCAG DI  V     + 
Sbjct: 52  LNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG-RAFCAGGDI--VSLYHLRK 108

Query: 142 RNTP-LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM 200
           R +P  + + F++ YS I  +  Y KP++++++GVTMG G G+S  G +R+ T++T+ A 
Sbjct: 109 RGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFAT 168

Query: 201 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGS 260
           PE  IG  PD G S+  +  P  G +G YLG+TG ++S  ++ L  GL T Y+ S  +  
Sbjct: 169 PETIIGFHPDAGASFNLSHLP--GRLGEYLGLTGLKLSG-AEMLACGLATHYIRSEEIPV 225

Query: 261 LKEALLAVTFSEDPHQDIVALLAKYS--SDPEGEAPLKLLLPQITSCFSSEKSVRQIIEE 318
           ++E L  +  ++DP   + + L K +  + PE    ++  +  +  CFS + +V +II+ 
Sbjct: 226 MEEQLKKL-LTDDPSV-VESCLEKCAEVAHPEKTGVIR-RIDLLEKCFSHD-TVEEIIDS 281

Query: 319 LKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMK 378
           L+      + +   W    L+ + + +P SL        KVA      +  L  L   + 
Sbjct: 282 LEIEAGRRKDT---WCITTLRRLKESSPLSL--------KVA-LRSIREGRLQTLDQCLI 329

Query: 379 YEYRVALR---SSLRSDFAEGVRAVLVDKDQ 406
            EYR++L+     +  +F EGVRA L+DKD+
Sbjct: 330 REYRMSLQGLIGPMSGNFCEGVRARLIDKDE 360

Length = 401

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  133 bits (337), Expect = 2e-36
 Identities = 59/182 (32%), Positives = 97/182 (53%), Gaps = 11/182 (6%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+AVITL+RP+ LNA+NL+M  +    LDE E+DP V+ V++ G+G +AF AG D+K  
Sbjct: 13  DGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG-KAFSAGADLK-- 69

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E+    +      +      L+  +++  KP I+ ++G  +G G+ ++     RI  E
Sbjct: 70  --ELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAE 127

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAK--GPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
                +PE  +GL P  G +    +  G G       L +TG+ I + ++AL  GL  + 
Sbjct: 128 DAKFGLPEVNLGLLPGDGGTQRLPRLLGRGR---AKELLLTGEPI-SAAEALELGLVDEV 183

Query: 253 VP 254
           VP
Sbjct: 184 VP 185

Length = 257

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score =  101 bits (253), Expect = 1e-24
 Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 11/145 (7%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           G A++T+ RP  LNA+NL+M  ++ S L +  +DP+++ V++ G G RAFC G D+    
Sbjct: 9   GYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEFA 67

Query: 136 AEIQKD-RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
            +   D R T      F   Y +I +I    K YIS ++GVT G  IGI+    ++  + 
Sbjct: 68  PDFAIDLRET------F---YPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASR 118

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAK 219
                     +GL  D G +Y   K
Sbjct: 119 DVKFVTAFQRLGLASDTGVAYFLLK 143

Length = 248

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score = 93.8 bits (234), Expect = 6e-22
 Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 19/198 (9%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSF---LDEWESDPRVKCVLIEGSGPRAFCAGMDI 131
           +GV  IT++RP   NA+   M   Y++    L+   +DP V+ V++ G+G RAF AG DI
Sbjct: 13  DGVLTITINRPDKKNALTAAM---YQALADALEAAATDPAVRVVVLTGAG-RAFSAGGDI 68

Query: 132 KGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRI 191
           K         +    +  V       +  I+   KP ++ ++G  +G G+ ++       
Sbjct: 69  KDFPK--APPKPPDELAPVNRF----LRAIAALPKPVVAAVNGPAVGVGVSLALACDLVY 122

Query: 192 VTEKTLLAMPENGIGLFPDVGFSYI--AAKGPGGGSVGAYLGMTGKRISTPSDALFAGLG 249
            +E    ++P   +GL PD G S +     G    +  A + + G+ +S   +AL  GL 
Sbjct: 123 ASESAKFSLPFAKLGLCPDAGGSALLPRLIGR---ARAAEMLLLGEPLSAE-EALRIGLV 178

Query: 250 TDYVPSGNLGSLKEALLA 267
              VP+  L +  +A  A
Sbjct: 179 NRVVPAAELDAEADAQAA 196

Length = 259

>gnl|CDD|205939 pfam13766, ECH_C, 2-enoyl-CoA Hydratase C-terminal region

 Score = 86.4 bits (215), Expect = 1e-20
 Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 17/112 (15%)

Query: 295 LKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQK 354
           L      I  CFS + +V +I+  L+   S       +WA + L+ +  G+P SL +T  
Sbjct: 1   LAEHREAIDRCFSGD-TVEEILAALEADGS-------EWAAKTLKTLRSGSPLSLKVT-- 50

Query: 355 YFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
              ++    G +      L+  ++ EYR+A+R     DFAEGVRA+L+DKD+
Sbjct: 51  -LEQLRRGRGLS------LAECLRMEYRLAVRCMAHGDFAEGVRALLIDKDR 95

This is the C-terminal region of enoyl-CoA hydratase. Length = 117

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score = 86.6 bits (215), Expect = 2e-19
 Identities = 76/249 (30%), Positives = 116/249 (46%), Gaps = 19/249 (7%)

Query: 74  PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
             GVAVI LDRP+A+NA++ ++  +    L++ E DP VK +++ G GP AF AG DIK 
Sbjct: 5   EAGVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTG-GPGAFSAGADIKE 63

Query: 134 VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
           + AE    +          A   L  ++ +  KP I+ ++G  +G G+ ++    YRI  
Sbjct: 64  MAAEPLAQQAQFS----LEA-QDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAA 118

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM--TGKRISTPSDALFAGLGTD 251
           +     +PE  +G+ P  G +    +  G   V A L M  TG+RI    +AL  GL   
Sbjct: 119 DNAKFGLPEVKLGIIPGAGGTQRLPRIIG---VSAALEMLLTGRRIR-AQEALKMGLVDK 174

Query: 252 YVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYSS---DPEGEAPLKLLLPQITSCFS 307
            VP   L    EA+ LA   ++ P   + AL A   +   D   E      L    + FS
Sbjct: 175 VVPEEQLVE--EAIELAQRLADKPPLALAALKAAMRAALEDALPEV-RAQALRLYPAPFS 231

Query: 308 SEKSVRQII 316
           ++     I 
Sbjct: 232 TDDVKEGIQ 240

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score = 80.2 bits (198), Expect = 4e-17
 Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 9/139 (6%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV- 134
            +AV+T++RPKALNA+N +   +  + LD+ E+D  V  V++ G+G +AF AG DI  + 
Sbjct: 13  HIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMK 72

Query: 135 -VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
            + E +  +   L  KVF        K+    KP I+ ++G  +G G  +S     RI +
Sbjct: 73  DLNEEEGRKFGLLGNKVFR-------KLENLDKPVIAAINGFALGGGCELSMACDIRIAS 125

Query: 194 EKTLLAMPENGIGLFPDVG 212
           EK     PE G+G+ P  G
Sbjct: 126 EKAKFGQPEVGLGITPGFG 144

Length = 260

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score = 79.0 bits (195), Expect = 1e-16
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 3/138 (2%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           G+A++TL+RP+ LNA+N  +  +  + LD  E D  V+ V++ G+G RAF AG DI    
Sbjct: 12  GIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFS 71

Query: 136 AEIQKDRNTPLVPKVFTAE-YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
           A +    +  L  + F     ++  ++  + KP I+ ++G+  G G  I+      I +E
Sbjct: 72  ASVAAGADVAL--RDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASE 129

Query: 195 KTLLAMPENGIGLFPDVG 212
           + L A PE  +G+ P  G
Sbjct: 130 RALFAKPEIRLGMPPTFG 147

Length = 260

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score = 77.1 bits (190), Expect = 6e-16
 Identities = 45/176 (25%), Positives = 85/176 (48%), Gaps = 10/176 (5%)

Query: 65  EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRA 124
            + +  +     V  ITL+RP+A NA++L +  + ++ L +   +  V+ V++ G+G +A
Sbjct: 2   LQNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKA 61

Query: 125 FCAGMDIK--GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIG 182
           FCAG D+K    + E Q      L+          +  + +  +P I+ ++G+ +G G+ 
Sbjct: 62  FCAGADLKERAGMNEEQVRHAVSLIRTT-------MEMVEQLPQPVIAAINGIALGGGLE 114

Query: 183 ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIS 238
           ++    +RI  E   L + E  + + P  G +    +  G G     L  TG+RIS
Sbjct: 115 LALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKE-LIYTGRRIS 169

Length = 260

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 23/209 (11%)

Query: 64  AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPR 123
           A  F         V ++TL+RP+ +NA++LD   + +   D++ +DP     ++ G+G +
Sbjct: 2   ALPFST-VERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDK 60

Query: 124 AFCAGMDIKGVVAEIQKDRNTPLVPKVF---TAEYSLICKISEYKKPYISLMDGVTMGFG 180
           AF AG D+K   A     R  P     F   T+ + L        KP I+ ++GV MG G
Sbjct: 61  AFSAGNDLKEQAA--GGKRGWP--ESGFGGLTSRFDL-------DKPIIAAVNGVAMGGG 109

Query: 181 IGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTP 240
             ++      +  E    A+PE  +GL    G  +   +  G       + +TG+R++  
Sbjct: 110 FELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMI-LTGRRVTAR 168

Query: 241 SDALFAGLGTDYVPSGNLGSLKEALLAVT 269
            + L  G   + VP+G      E L A  
Sbjct: 169 -EGLELGFVNEVVPAG------ELLAAAE 190

Length = 259

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 21/215 (9%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            V  +TL+RP+A NA++  +     + L E ++D  V  V++ G+ P AFCAG+D+K + 
Sbjct: 13  RVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADP-AFCAGLDLKELG 71

Query: 136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
            +               A  +        +KP I  ++G  +  G+ ++      I +E+
Sbjct: 72  GDGSAYGAQ-------DALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASER 124

Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY----LGMTGKRISTPSDALFAGLGTD 251
              A     +G+ P  G S    + P    VG      + +TG  +   +DAL AGL T+
Sbjct: 125 ARFADTHARVGILPGWGLS---VRLP--QKVGIGRARRMSLTGDFLD-AADALRAGLVTE 178

Query: 252 YVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKY 285
            VP   L  L  A  LA + + +    + AL A Y
Sbjct: 179 VVPHDEL--LPRARRLAASIAGNNPAAVRALKASY 211

Length = 258

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 71.7 bits (176), Expect = 4e-14
 Identities = 64/256 (25%), Positives = 102/256 (39%), Gaps = 57/256 (22%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           G+  IT + P   NAM+LDM       L   E D  ++ V++ G+G +AF +G DI    
Sbjct: 20  GLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADI---- 75

Query: 136 AEIQKDRNTPLVPKVF----TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRI 191
           ++ ++ R+       +     A  +    +++Y KP I+ + G  +G G+GI+     RI
Sbjct: 76  SQFEESRSDAEAVAAYEQAVEAAQAA---LADYAKPTIACIRGYCIGGGMGIALACDIRI 132

Query: 192 VTEKTLLAMPENGIGLFPDVGFSYIAAK------GPGGGSVGAYLGMTGKRISTPSDALF 245
             E +   +P   +GL    G+ Y   K      GP   S    L  T +R    ++AL 
Sbjct: 133 AAEDSRFGIPAARLGL----GYGYDGVKNLVDLVGP---SAAKDLFYTARRF-DAAEALR 184

Query: 246 AGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC 305
            GL              + L           D  A +A       G APL L        
Sbjct: 185 IGLVHRVTA-------ADDLETAL------ADYAATIA-------GNAPLTL-------- 216

Query: 306 FSSEKSVRQIIEELKK 321
               ++ ++ I EL K
Sbjct: 217 ----RAAKRAIAELLK 228

Length = 269

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 14/149 (9%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEW-ESDPRVKCVLIEGSGPRAFCAGMDIKG 133
             VA I L+RP+ALNA++  M  +    L E  ES   +  V++ G+G R F AG DIK 
Sbjct: 14  GRVATIMLNRPEALNALDEPMLKELLQALKEVAESSAHI--VVLRGNG-RGFSAGGDIKM 70

Query: 134 VVA---EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYR 190
           +++   E + D     + ++    Y++        K  IS + G   G G+ I+    Y 
Sbjct: 71  MLSSNDESKFDGVMNTISEIVVTLYTM-------PKLTISAIHGPAAGLGLSIALTADYV 123

Query: 191 IVTEKTLLAMPENGIGLFPDVGFSYIAAK 219
           I      LAM   GIGL PD G  +   K
Sbjct: 124 IADISAKLAMNFIGIGLIPDGGGHFFLQK 152

Length = 260

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score = 68.3 bits (167), Expect = 5e-13
 Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 21/189 (11%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+  + LDRP+A NA+  +M    +S  ++ ++D   + V++  S P  FCAG D+   
Sbjct: 3   SGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADL--- 59

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKK---PYISLMDGVTMGFGIGISGHGRYRI 191
                K+R      +V     SL    S  +    P I++++G  +G G+ ++     RI
Sbjct: 60  -----KERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRI 114

Query: 192 VTEKTLLAMPENGIGLFPDVG----FSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 247
             E+ +  +PE G+ + P  G       +      G S    L  TG+RI    +A   G
Sbjct: 115 CGEEAVFGLPETGLAIIPGAGGTQRLPRLV-----GRSRAKELIFTGRRIGA-REAASMG 168

Query: 248 LGTDYVPSG 256
           L    VP+G
Sbjct: 169 LVNYCVPAG 177

Length = 251

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 68.2 bits (167), Expect = 6e-13
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 12/118 (10%)

Query: 72  VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDI 131
           V  +GVAVITL+RP  LNA    M+ +  + +D  E+DP V+ +++ G+G R FCAG D+
Sbjct: 11  VADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG-RGFCAGADM 69

Query: 132 KGVVA----EIQKDRN-TPLV---PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGI 181
             +      + ++D +  P V      +   Y  +  +   +KP I+ ++G   G G+
Sbjct: 70  GELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTAL---RKPVIAAINGACAGIGL 124

Length = 272

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 8/143 (5%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA +TL+RP+A NA++  M    ++ LD   +DP V+ V++  +G  AFCAG D+K  
Sbjct: 19  DGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGK-AFCAGHDLK-- 75

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E++  R       +F     ++  I    +P I+ + G+    G  +       +  +
Sbjct: 76  --EMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAAD 133

Query: 195 KTLLAMPENGIGLF---PDVGFS 214
               A+P   IGLF   P V  S
Sbjct: 134 TARFAVPGVNIGLFCSTPMVALS 156

Length = 266

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 13/189 (6%)

Query: 54  RTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKA-LNAMNLDMDIKYKSFLDEWESDPRV 112
           R F+T AA  A       V    VAV+ +D P + +N ++ ++  ++K  ++E  ++  +
Sbjct: 1   RLFSTSAALMARTHRHYEVK-GDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAI 59

Query: 113 KCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLM 172
           K  ++    P +F AG DI+ + A       T L  +       +  +I + +KP ++ +
Sbjct: 60  KSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEG----QEMFERIEKSQKPIVAAI 115

Query: 173 DGVTMGFGIGISGHGRYRIVTE--KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYL 230
            G  +G G+ ++    YRI T+  KTLL +PE  +GL P  G +    + P    V A L
Sbjct: 116 SGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGT---QRLPKLTGVPAAL 172

Query: 231 GM--TGKRI 237
            M  TGK+I
Sbjct: 173 DMMLTGKKI 181

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 38/215 (17%)

Query: 64  AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPR 123
           A + V      +GVA++ L+RP+A NA+N+++  +      E   DP ++ +++ G G +
Sbjct: 5   ATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTG-GEK 63

Query: 124 AFCAGMDIKGVVA----EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGF 179
            F AG DIK        E+   R+T         E      I++  KP I+ ++G  +G 
Sbjct: 64  VFAAGADIKEFATAGAIEMYL-RHT---------ER-YWEAIAQCPKPVIAAVNGYALGG 112

Query: 180 GIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG-----SVGAY----L 230
           G  ++ H    +  E      PE  +GL P          G GG      +VG +    +
Sbjct: 113 GCELAMHADIIVAGESASFGQPEIKVGLMP----------GAGGTQRLVRAVGKFKAMRM 162

Query: 231 GMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 265
            +TG  +  P +AL  GL ++ V      +L  AL
Sbjct: 163 ALTGCMVPAP-EALAIGLVSEVVEDEQ--TLPRAL 194

Length = 261

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 64.8 bits (158), Expect = 9e-12
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 25/133 (18%)

Query: 58  TMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI 117
           TM    +E  +      NG+A IT++RPKALNA+   M ++  +     + D  VK +++
Sbjct: 1   TMTQTVSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIIL 60

Query: 118 EGSGPRAFCAGMDI-------KGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS 170
            GSG RAFC+G+D+       KG V +++ D   P+             ++   +KP I 
Sbjct: 61  TGSG-RAFCSGVDLTAAEEVFKGDVKDVETD---PVA------------QMERCRKPIIG 104

Query: 171 LMDG--VTMGFGI 181
            ++G  +T GF I
Sbjct: 105 AINGFAITAGFEI 117

Length = 265

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 24/137 (17%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK-- 132
            G+A IT +RP A NAM   M        +   +DP ++ V++ G+G +AF AG DI   
Sbjct: 16  GGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQF 75

Query: 133 --------GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGIS 184
                    V  E + DR       V  A       + + + P I+ + G  +G G  I+
Sbjct: 76  RAFSTAEDAVAYERRIDR-------VLGA-------LEQLRVPTIAAIAGACVGGGAAIA 121

Query: 185 GHGRYRIVTEKTLLAMP 201
                RI T       P
Sbjct: 122 AACDLRIATPSARFGFP 138

Length = 262

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 5/163 (3%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           GVA +TL+RP  LN+   +M ++ +  L+  E D   + +++ G+G R FCAG D+    
Sbjct: 8   GVARLTLNRPDKLNSFTAEMHLELREALERVERD-DARALMLTGAG-RGFCAGQDLSER- 64

Query: 136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
                     L   + T    L+ ++     P +  ++GV  G G  ++      +  E 
Sbjct: 65  -NPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAES 123

Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIS 238
                    IGL PD G ++   +  G       L M G+++ 
Sbjct: 124 ARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMG-LAMLGEKLD 165

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 14/141 (9%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            VAVITL+ P A NA++  +  +    LD+ E D  V+ V+I G G R F AG DIK   
Sbjct: 11  HVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGADIKEFT 68

Query: 136 AEIQKDRNTPLVPK---VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
           +  + ++ T L       F        ++ ++ KP I+ + G  +G G+ ++     R  
Sbjct: 69  SVTEAEQATELAQLGQVTFE-------RVEKFSKPVIAAIHGAALGGGLELAMSCHIRFA 121

Query: 193 TEKTLLAMPENGIGLFPDVGF 213
           TE   L +PE  +GL P  GF
Sbjct: 122 TESAKLGLPELNLGLIP--GF 140

Length = 257

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 3/143 (2%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDP-RVKCVLIEGSGPRAFCAGMDIKGV 134
           GVA++TLD P+ +NA+++DM       LD  E     V+C+++ G+G R FC G +++G 
Sbjct: 13  GVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGR 71

Query: 135 VAEIQKDRNTPLVPKVFTAEYS-LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
            +  ++  +           Y   + ++     P ++ ++G   G G+  +  G   +  
Sbjct: 72  GSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCA 131

Query: 194 EKTLLAMPENGIGLFPDVGFSYI 216
                      IGL PD G +++
Sbjct: 132 RSAYFLQAFRRIGLVPDGGSTWL 154

Length = 266

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 13/136 (9%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            VAV+TLD P  +NA++ ++  +  +  DE    P V+ V++ G+G + FCAG D+KG  
Sbjct: 13  HVAVVTLDNP-PVNALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGADLKGRP 70

Query: 136 AEIQKDRNTP----LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRI 191
             I+   +         + F A       I E  KP I+ ++G  +G G+G+       +
Sbjct: 71  DVIKGPGDLRAHNRRTRECFHA-------IRECAKPVIAAVNGPALGAGLGLVASCDIIV 123

Query: 192 VTEKTLLAMPENGIGL 207
            +E  +  +PE  +GL
Sbjct: 124 ASENAVFGLPEIDVGL 139

Length = 257

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 59.9 bits (146), Expect = 4e-10
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 19/185 (10%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP  +NA++  M  +  + +   + D  ++ V++ G G  AFCAG+D+K V
Sbjct: 11  DGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEG-GAFCAGLDVKSV 69

Query: 135 VAEIQKDRN--TPLVP-------KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG 185
            +            +P       +V      L         P I+ ++GV  G G+ I+ 
Sbjct: 70  ASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPV-------PVIAALEGVCFGGGLQIAL 122

Query: 186 HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALF 245
               RI    T L++ E   GL PD+    ++ +G     V   L  T  R+ +  +AL 
Sbjct: 123 GADIRIAAPDTKLSIMEAKWGLVPDMA-GTVSLRGLVRKDVARELTYTA-RVFSAEEALE 180

Query: 246 AGLGT 250
            GL T
Sbjct: 181 LGLVT 185

Length = 262

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 17/121 (14%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A ITL+RP  LNA  + M  +     D  ++D  V+ V++ G+G RAFCAG D+   
Sbjct: 12  DGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG-RAFCAGADLSAG 70

Query: 135 VAEIQKDRNTPLVPKVFTAEYS--------------LICKISEYKKPYISLMDGVTMGFG 180
                 D + P  P     E                +  +I +  KP I+ ++G  +G G
Sbjct: 71  GNTF--DLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVG 128

Query: 181 I 181
            
Sbjct: 129 A 129

Length = 296

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 58.8 bits (143), Expect = 8e-10
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            V +IT++RP+A NA+N  +     + LDE ++DP +   ++ G+G   FCAGMD+K   
Sbjct: 12  RVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAG-GTFCAGMDLKAFA 70

Query: 136 AEIQKDRNTPLVP 148
                    P +P
Sbjct: 71  R-----GERPSIP 78

Length = 254

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 8/181 (4%)

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
             +GVA+IT++ P   NA+  +M  + ++ +   E+DP V  +++ G+G  AFCAG D+ 
Sbjct: 9   VDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGK-AFCAGADLT 67

Query: 133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
            + A   +     L        Y     ++    P I+ ++G  +G G+ ++     RI 
Sbjct: 68  ALGAAPGRPAEDGL-----RRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIA 122

Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
             K L       +GL P  G +++  +  G     A L + G R    + A+  GL    
Sbjct: 123 GPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAAL-LFGMRFDAEA-AVRHGLALMV 180

Query: 253 V 253
            
Sbjct: 181 A 181

Length = 249

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 28/189 (14%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            V ++TL+RP+A NA+N  +  +  + L+   +D  +   +I G+  R F AG D+  + 
Sbjct: 11  RVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGN-ARFFAAGADLNEMA 69

Query: 136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
              +KD    L   +      L  ++  + KP I+ ++G  +G G  ++      I  E 
Sbjct: 70  ---EKD----LAATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGEN 122

Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGG-----SVGAYLGM----TGKRISTPSDALFA 246
               +PE  +G+ P          G GG      SVG  L      TG+ I T   A  A
Sbjct: 123 ARFGLPEITLGIMP----------GAGGTQRLIRSVGKSLASQMVLTGESI-TAQQAQQA 171

Query: 247 GLGTDYVPS 255
           GL ++  P 
Sbjct: 172 GLVSEVFPP 180

Length = 255

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 10/112 (8%)

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEW---ESDPRVKCVLIEGSGPRAFCAGM 129
            P GV  I L+ P ALNA +  M   ++   D W   + DP V+ VLI G G +AF AG 
Sbjct: 18  PPPGVLEIVLNGPGALNAADARM---HRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGG 73

Query: 130 DIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGI 181
           D+  +V E+  D       +V+     L+  +    KP +S + G  +G G+
Sbjct: 74  DL-ALVEEMADDFEV--RARVWREARDLVYNVINCDKPIVSAIHGPAVGAGL 122

Length = 268

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
           GVA +TL+RP  LN+   +M  + +  LD+ E D   + +L+ G+G R FCAG D
Sbjct: 13  GVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAG-RGFCAGQD 65

Length = 262

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
            +A ITL+RP+  NA+  D  ++ ++ ++  + DP V  +L+ G+G + FCAG D+  
Sbjct: 19  RIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG-KGFCAGYDLSA 75

Length = 302

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 15/198 (7%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A +TL+RP+  NAM+  ++ +    LD  E D     +++ G+G  A+ AGMD+K  
Sbjct: 16  DGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLKEY 74

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E        L  ++    Y    ++  Y+KP I++++G   G G          I  +
Sbjct: 75  FRETDAQPEI-LQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAAD 133

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----AYLGMTGKRISTPSDALFAGLGT 250
           +    + E   G+ P  G S   A      +VG     Y  MTG+   T   A   GL  
Sbjct: 134 EAQFGLSEINWGIPPGGGVSKAMAD-----TVGHRDALYYIMTGETF-TGRKAAEMGLVN 187

Query: 251 DYVPSGNLGSLKEALLAV 268
           + VP   L  L+     +
Sbjct: 188 ESVP---LAQLRARTREL 202

Length = 275

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 60/198 (30%), Positives = 96/198 (48%), Gaps = 22/198 (11%)

Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +ITL+RPKALNA+N  +  +  + L  +++D  +  ++I GS  +AF AG DIK +  
Sbjct: 14  VGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIKEMAD 72

Query: 137 EIQKDRNTPLVPKVFTAEY-SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
               D        V+  +Y +   K++  +KP I+ + G  +G G  ++      I  + 
Sbjct: 73  LSFMD--------VYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADT 124

Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM----TGKRISTPSDALFAGLGTD 251
                PE  +G+ P +G S    +     +VG    M    TG R+   ++A  AGL + 
Sbjct: 125 AKFGQPEIKLGVLPGMGGSQRLTR-----AVGKAKAMDLCLTG-RMMDAAEAERAGLVSR 178

Query: 252 YVPSGNLGSLKEALLAVT 269
            VP+  L  L EAL A T
Sbjct: 179 VVPADKL--LDEALAAAT 194

Length = 257

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 8/193 (4%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            VA +TL+RP   NA N  +  +  +     ++D  V+ V++ G+G  AFCAG D+  + 
Sbjct: 13  QVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGK-AFCAGADLNWMK 71

Query: 136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
                  +         A+  ++  I    KP I+ + G     G+G+       +  + 
Sbjct: 72  KMAGYSDDENRADARRLAD--MLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADH 129

Query: 196 TLLAMPENGIGLFPDVGFSY-IAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 254
            +  + E  +GL P     Y I A G           +T +R    ++AL  GL  + VP
Sbjct: 130 AVFCLSEVRLGLIPATISPYVIRAMGER---AARRYFLTAERF-DAAEALRLGLVHEVVP 185

Query: 255 SGNLGSLKEALLA 267
           +  L +  + LLA
Sbjct: 186 AEALDAKVDELLA 198

Length = 262

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 19/172 (11%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + +A +TL+RP+  N  N+ M  +    L   E DP V+ +LI  +G   F  G D+  +
Sbjct: 10  DDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGK-VFSVGGDLVEM 68

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKIS----EYKKPYISLMDGVTMGFGIGISGHGRYR 190
              + +D    LV     AE  L+ +IS    +  KP I  +DG   G    ++    + 
Sbjct: 69  KRAVDEDDVQSLVK---IAE--LVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFC 123

Query: 191 IVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----AYLGMTGKRIS 238
           I + KT       G+GL PD G  ++  +     ++G     +L MTG+ ++
Sbjct: 124 IASTKTKFIQAFVGVGLAPDAGGLFLLTR-----AIGLNRATHLAMTGEALT 170

Length = 255

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 9/191 (4%)

Query: 73  HPN-GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDI 131
           HP   +A+ITL+RP+ +N+M  D+ +  K  L E   D  V+ V++ G+G R F +G D 
Sbjct: 15  HPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADH 73

Query: 132 KGVVAEIQKDRNTPLVPKVFTAEY--SLICKISEYKKPYISLMDGVTMGFGIGISGHGRY 189
           K        +  T     + + E    +I  +    +P I+ ++G  +G G+ ++     
Sbjct: 74  KSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADI 133

Query: 190 RIVTEKTLL--AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 247
           R+ +       A   NG+    ++G SY+  +    GS  A+  M   R     +A   G
Sbjct: 134 RVASSSAYFRAAGINNGLTA-SELGLSYLLPRAI--GSSRAFEIMLTGRDVDAEEAERIG 190

Query: 248 LGTDYVPSGNL 258
           L +  VP   L
Sbjct: 191 LVSRQVPDEQL 201

Length = 276

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 6/133 (4%)

Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           VA++TL+ P A N    D     K  + E  +D  V  ++I G G + F AG D+  + A
Sbjct: 13  VAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLN-LFA 70

Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
           +  K     +  + F   +     +S ++   I+ ++G  MG G+  +     RI  E+ 
Sbjct: 71  DGDKAVAREMA-RRFGEAFE---ALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQA 126

Query: 197 LLAMPENGIGLFP 209
            +A+PE  +GL P
Sbjct: 127 QMALPEASVGLLP 139

Length = 258

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 14/173 (8%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V  + L+RP   NA++LD   ++   L   + +P V  +++ G+G   FC+G+D+K  
Sbjct: 16  SSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDH-FCSGIDLK-T 73

Query: 135 VAEIQKD-------RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHG 187
           +  I +        R+   + +        I  I + +KP I+ + G  +G G+ I    
Sbjct: 74  LNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTAC 133

Query: 188 RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG--GGSVGAYLGMTGKRIS 238
             R  +E    ++ E  + +  D+G      + P   G      L +TG+R S
Sbjct: 134 DIRYCSEDAFFSVKEVDLAITADLG---TLQRLPSIVGYGNAMELALTGRRFS 183

Length = 275

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 16/197 (8%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GVA +T+    +LN +   + +     L    +DP V+ +++ G+G +AF  G DIK +
Sbjct: 15  RGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEM 74

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK-ISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
                         + F +    +C  +  +  P I+ + G  +G G+ ++     RI  
Sbjct: 75  ATL------DQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAA 128

Query: 194 EKTLLAMPENGIGLFPDVGFSYI-AAKGPG--GGSVGAYLGMTGKRISTPSDALFAGLGT 250
                 MPE  +G+ P V    I AA  P   G +   +L +TG+ I     AL  GL  
Sbjct: 129 HDAQFGMPEVRVGI-PSV----IHAALLPRLIGWARTRWLLLTGETIDAAQ-ALAWGLVD 182

Query: 251 DYVPSGNLGSLKEALLA 267
             VP   L +  E L A
Sbjct: 183 RVVPLAELDAAVERLAA 199

Length = 256

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 6/199 (3%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           GVA +TL+RP+  NA++  M  +  +      +D  V+ V++ G+G ++FCAG D+  + 
Sbjct: 14  GVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMR 72

Query: 136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
           A++  DR T +      A   ++  +++  KP I  + G   G G+G+       I    
Sbjct: 73  AQMTADRATRIEEARRLAM--MLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSG 130

Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255
               + E  +GL P     Y+ A+   G +    + M+ +      +A+  GL +  VP+
Sbjct: 131 ARFGLTETRLGLIPATISPYVVAR--MGEANARRVFMSARLFDA-EEAVRLGLLSRVVPA 187

Query: 256 GNLGSLKEALLAVTFSEDP 274
             L +  EA +    S  P
Sbjct: 188 ERLDAAVEAEVTPYLSCAP 206

Length = 262

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 52.9 bits (127), Expect = 9e-08
 Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 3/138 (2%)

Query: 74  PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           P G A + L R    NA N  M  +    LD+ +SD  ++ +L+ G G R F AG D+  
Sbjct: 13  PRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRG-RHFSAGADLAW 71

Query: 134 VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
           +      D NT L      AE  L+  +   K P ++++ G   G  +G+       I  
Sbjct: 72  MQQSADLDYNTNLDDARELAE--LMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGA 129

Query: 194 EKTLLAMPENGIGLFPDV 211
           +     + E  IGL P V
Sbjct: 130 DDAQFCLSEVRIGLAPAV 147

Length = 265

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 11/189 (5%)

Query: 79  VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
           ++T++RP+A NA++ +M        D  ++DP ++  ++ G+G  AFCAGMD+K    + 
Sbjct: 17  IVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGG-AFCAGMDLKAATKKP 75

Query: 139 QKD--RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
             D  ++    P    A    + K     KP I+ ++G  +  G  I      R+  E  
Sbjct: 76  PGDSFKDGSYDPSRIDA----LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESA 131

Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
              + E    LFP +G S +        +V   L +TG+ I+   +A   GL    VP G
Sbjct: 132 KFGISEAKWSLFP-MGGSAVRLVRQIPYTVACDLLLTGRHITAA-EAKEIGLIGHVVPDG 189

Query: 257 NLGSLKEAL 265
              +L +AL
Sbjct: 190 Q--ALDKAL 196

Length = 263

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 20/139 (14%)

Query: 71  NVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
                G+A +T+D P  +NA+           +    +DP  + V++   G R F AG+D
Sbjct: 6   TTPEPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNAGVD 63

Query: 131 IKGVVAEIQKD-RNTPLVP------KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGI 183
           IK    E+Q     T L+         F A Y       E   P I+ + G  +G GIG+
Sbjct: 64  IK----ELQATPGFTALIDANRGCFAAFRAVY-------ECAVPVIAAVHGFCLGGGIGL 112

Query: 184 SGHGRYRIVTEKTLLAMPE 202
            G+    + ++     +PE
Sbjct: 113 VGNADVIVASDDATFGLPE 131

Length = 249

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 13/189 (6%)

Query: 71  NVHPNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGM 129
            V  +G+A++T+D P + +N +  +   +    L + + D  ++ +++    P  F AG 
Sbjct: 5   TVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGA 64

Query: 130 DIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGI--GISGHG 187
           DI  + A         L  +       L  ++     P ++ + G  +G G+   ++ H 
Sbjct: 65  DISMLAACQTAGEAKALAQQ----GQVLFAELEALPIPVVAAIHGACLGGGLELALACHS 120

Query: 188 RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM--TGKRISTPSDALF 245
           R     +KT+L +PE  +GL P  G +    + P    V   L M  TGK++     AL 
Sbjct: 121 RVCSDDDKTVLGLPEVQLGLLPGSGGT---QRLPRLIGVSTALDMILTGKQLR-AKQALK 176

Query: 246 AGLGTDYVP 254
            GL  D VP
Sbjct: 177 LGLVDDVVP 185

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK-- 132
           + VA +TL+RP   NAMN     +        ++DP V+ V++ GSG + F  G+D+   
Sbjct: 14  DHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSG-KHFSYGIDLPAM 72

Query: 133 -GVVAEIQKD 141
            GV  ++ KD
Sbjct: 73  AGVFGQLGKD 82

Length = 272

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
             +A ITL+RP+A NA N  M  +  +     E+D  V+ +++ G+G   F AG D+  
Sbjct: 12  GRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGK-HFSAGHDLGS 69

Length = 288

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 51.4 bits (124), Expect = 5e-07
 Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 45/205 (21%)

Query: 71  NVHPNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGM 129
           NV  + +AVIT+D P + +N +  +   + ++ L +   D  +K V+     P  F AG 
Sbjct: 10  NVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGA 69

Query: 130 DIKGVVAEIQKDRNTPLVPKVFTAE---------YSLICKISEYKKPYISLMDGVTMGFG 180
           DI  ++A  +            TA+           L  +I     P ++ + G  +G G
Sbjct: 70  DIN-MLAACK------------TAQEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGG 116

Query: 181 IGISGHGRYRIVT--EKTLLAMPENGIGLFPDVGFSYIAAKGPGGG-------SVGAYLG 231
           + ++    YR+ T   KT+L +PE  +GL P          G GG         V   L 
Sbjct: 117 LELALACHYRVCTDDPKTVLGLPEVQLGLLP----------GSGGTQRLPRLIGVSTALD 166

Query: 232 M--TGKRISTPSDALFAGLGTDYVP 254
           M  TGK++     AL  GL  D VP
Sbjct: 167 MILTGKQLR-AKQALKLGLVDDVVP 190

Length = 708

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 25/147 (17%)

Query: 75  NGVAVITLDRPKALNAMNL----DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
             +  ITLDRPKA NA++      M   + +F D    DP ++  +I G+G + F AG D
Sbjct: 11  GSILEITLDRPKA-NAIDAKTSFAMGEVFLNFRD----DPELRVAIITGAGEKFFSAGWD 65

Query: 131 IKGVVAEIQKDRNTPLVPKVFTAEYSL-----ICKISEYKKPYISLMDGVTMGFGIGISG 185
           +K        D           A++       + +I +  KP I+ ++G   G G  ++ 
Sbjct: 66  LKAAAEGEAPD-----------ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELAL 114

Query: 186 HGRYRIVTEKTLLAMPENGIGLFPDVG 212
              + +  +    A+PE  +G+ PD G
Sbjct: 115 AADFIVCADNASFALPEAKLGIVPDSG 141

Length = 261

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 44/199 (22%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GVA I L+RP   NA+N  +    ++         R   V++ G G   FCAG+D+   
Sbjct: 10  GGVATIGLNRPAKRNALNDGLIAALRAAFARLPEGVR--AVVLHGEGDH-FCAGLDL--- 63

Query: 135 VAEIQKDRNTPLV------PKVF-TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHG 187
            +E+++      +       +VF   +Y  +        P I+ + G  +G G+ ++   
Sbjct: 64  -SELRERDAGEGMHHSRRWHRVFDKIQYGRV--------PVIAALHGAVVGGGLELASAA 114

Query: 188 RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV------GAY----LGMTGKRI 237
             R+  E T  A+PE   G+F  VG         GGGSV      G      + +TG R+
Sbjct: 115 HIRVADESTYFALPEGQRGIF--VG---------GGGSVRVPRLIGVARMTDMMLTG-RV 162

Query: 238 STPSDALFAGLGTDYVPSG 256
               +    GL    VP+G
Sbjct: 163 YDAQEGERLGLAQYLVPAG 181

Length = 255

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 49.4 bits (118), Expect = 9e-07
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 10/176 (5%)

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
           HP GV VI  +RP+  NA+   M       L   ++D  ++  +  G+    F AG D++
Sbjct: 13  HP-GVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGT-EGCFSAGNDMQ 70

Query: 133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             +A      +     ++     +L    +E +KP +S +DG+ +G G  I  H      
Sbjct: 71  DFLAAAMGGTS--FGSEILDFLIAL----AEAEKPIVSGVDGLAIGIGTTIHLHCDLTFA 124

Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL 248
           + ++L   P   + L P+ G S +A +  G     A L + G+  S    A  AGL
Sbjct: 125 SPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLAL-GEGFSA-EAAQEAGL 178

Length = 251

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           VA ITL+RP+ LN +   M  + ++ +   E D  +K +++ G+G RAF  G D  G
Sbjct: 15  VATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG-RAFSGGYDFGG 70

Length = 298

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 14/168 (8%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
              V+TL  P A NA++ DM       L+  E DP ++ V++ G+G   FCAG ++    
Sbjct: 12  STLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNR-- 68

Query: 136 AEIQKDRNTPLVPKVFTAE----YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRI 191
             + ++R  P  P V  A     +  I  I  + KP I+ ++G   G G  ++      +
Sbjct: 69  --LLENRAKP--PSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLV 124

Query: 192 VTEKTLLAMPENGIGLFPDVGFSYIAAKG-PGGGSVGAYLGMTGKRIS 238
                   M    +GL PD G S+  A+  P    +   L + GK IS
Sbjct: 125 AARDAKFVMAYVKVGLTPDGGGSWFLARALP--RQLATELLLEGKPIS 170

Length = 260

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           GVA +TLD P   NA++  +  +    L    +DP V+ V++  +G   FCAG D+    
Sbjct: 15  GVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTG-GTFCAGADLS--- 70

Query: 136 AEIQKDRNTPLVPKVFTAE--YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
            E       P    V  A    +L+  I E  KP I+ +DG     G G+ G     +  
Sbjct: 71  -EAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAG 129

Query: 194 EKTLLAMPENGIGLFPDV 211
            ++  A+ E  IG+ P +
Sbjct: 130 PESTFALTEARIGVAPAI 147

Length = 260

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 10/141 (7%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA ITL+RP+  N +  +   + +    E      VK V++ G+G   FC+G D+  +
Sbjct: 25  DGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSGGDVHEI 83

Query: 135 VAEIQKDRNTPLVPKVFT-AEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
           +  + K     L+   FT     L+  +    +P I+ +DGV  G G  ++     R+ T
Sbjct: 84  IGPLTKMDMPELL--AFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGT 141

Query: 194 EKTLLAMPENGIGLFPDVGFS 214
                A       LF  VG +
Sbjct: 142 PSAKTAF------LFTRVGLA 156

Length = 277

>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            V  + L RP+A N +N  +  +    LD  E       V++EG  P  FC G D   + 
Sbjct: 13  DVCFLQLHRPEAQNTINDRLIAECMDVLDRCEHA--ATIVVLEGL-PEVFCFGADFSAIA 69

Query: 136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDG-VTMGFGIGISGHGRYRIVTE 194
            +    R   +  +     Y L  +++      I+ + G V  G GIG        I  E
Sbjct: 70  EKPDAGRADLIDAEPL---YDLWHRLATGPYVTIAHVRGKVNAG-GIGFVAASDIVIADE 125

Query: 195 KTLLAMPENGIGLFP 209
               ++ E   GL P
Sbjct: 126 TAPFSLSELLFGLIP 140

Length = 255

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 76  GVAVITLDRPKALNAM--NLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
            +  +T++RP+  NA+  N  +D    +      +D  V+ V++ G+G  AF +G ++K
Sbjct: 12  HIVTLTMNRPETRNALSDNDAVD-ALVAACAAINADRSVRAVILTGAGT-AFSSGGNVK 68

Length = 266

>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 55/222 (24%), Positives = 89/222 (40%), Gaps = 28/222 (12%)

Query: 57  ATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVL 116
              +  GA   V+ +  P G+AV+ L + + +N+M L M       L   E+DP V+ V 
Sbjct: 2   PAPSPPGATPGVRVDRRPGGIAVVWLAK-EPVNSMTLAMWRSLDDALTALENDPTVRGV- 59

Query: 117 IEGSGPR--AFCAGMDIKGVVA---------EIQKDRNTPLVPKVFTAEYSLICKISEYK 165
           +  SG R   F AG DI  + A         E    + T LV ++  +  + +C I    
Sbjct: 60  VFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLV-RLLRSRLATVCAIR--- 115

Query: 166 KPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225
                   G     G  +S    YR+ T +  + + E  +G+ P   F      G     
Sbjct: 116 --------GACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGI-PVPKFWARLFMGRVIDR 166

Query: 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLA 267
             A   +   R+  P++A   GL  + VP+  L  ++ A  A
Sbjct: 167 KVAESLLLRGRLVRPAEAKQLGLIDEVVPAAAL--MEAAASA 206

Length = 278

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD-- 130
             +G+A IT++RP+  NA       +    LD+   DP +  V++ G+G +AFC+G D  
Sbjct: 9   STDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQK 68

Query: 131 IKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFG 180
           ++G    I        V ++   +      I    KP I++++G  +G G
Sbjct: 69  VRGDYGYIDDSG----VHRLNVLDVQRQ--IRTCPKPVIAMVNGYAIGGG 112

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           V  I L RP+  NA+N ++  + +  + +   D   + +++ G G   FCAG D+ G V
Sbjct: 10  VLTIELQRPERRNALNAELCEELREAVRK-AVDESARAIVLTGQGT-VFCAGADLSGDV 66

Length = 243

>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 73  HPNGVAVITLDRPKALNAMN-LDMDIKYKSFLDEWESDPRVKCVLIEGS--GPRAFCAGM 129
             +G+A IT++RP+  NA     +D    +F D  + DP V  +L+ G+  G +AFC+G 
Sbjct: 25  SVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARD-DPNVGVILLTGNGDGDKAFCSGG 83

Query: 130 DIK 132
           D K
Sbjct: 84  DQK 86

Length = 282

>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 8/62 (12%)

Query: 75  NGVAVITLDRPKALNA----MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
           +G+A IT++RP+  NA       +M     +F D  + D  +  +++ G+G +AFC+G D
Sbjct: 21  DGIAKITINRPEVRNAFRPKTVKEM---IDAFADARD-DDNIGVIILTGAGDKAFCSGGD 76

Query: 131 IK 132
            K
Sbjct: 77  QK 78

Length = 273

>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 10/69 (14%)

Query: 74  PNGVAVITLDRPKALNAMNLD-MDIKYKSFLDEWESDPRVKCVLIEGSGP------RAFC 126
             G   I  DRP+  NA     +D  Y++ LD     P V CVL+ G+GP       AFC
Sbjct: 32  DQGTVRIAFDRPEVRNAFRPHTVDELYRA-LDHARMSPDVGCVLLTGNGPSPKDGGWAFC 90

Query: 127 AGMD--IKG 133
           +G D  I+G
Sbjct: 91  SGGDQRIRG 99

Length = 302

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 3/138 (2%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A +  D P ++N  +          LD  ++   +K V++  SG  AF  G DI   
Sbjct: 15  DGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILT-SGKDAFIVGADITEF 73

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
           +       +  L+  +  A  S+  K+ +   P ++ ++G+ +G G        +RI  +
Sbjct: 74  LGLFALP-DAELIQWLLFAN-SIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADD 131

Query: 195 KTLLAMPENGIGLFPDVG 212
              + +PE  +G+ P  G
Sbjct: 132 TAKIGLPETKLGIMPGFG 149

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +I LDRP   NA +  M       L E+E+D  ++  ++   G   F AG+D+  V  
Sbjct: 9   VLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEH-FTAGLDLADVAP 67

Query: 137 EIQK 140
           ++  
Sbjct: 68  KLAA 71

Length = 255

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 17/57 (29%), Positives = 30/57 (52%)

Query: 74  PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
             G+A IT++RP+  NA       + +   ++   D  V  +++ G G +AFC+G D
Sbjct: 74  GEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGD 130

Length = 327

>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 41/147 (27%), Positives = 60/147 (40%), Gaps = 24/147 (16%)

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
             +GVA ITLD  K  NA++  M     + LD+ E D     V+I G  P  F  G D+K
Sbjct: 9   LEDGVATITLDDGKV-NALSPAMIDALNAALDQAEDD--RAVVVITGQ-PGIFSGGFDLK 64

Query: 133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDG--VTMG--------FGIG 182
            + +  Q      L+    T    L+     + KP I    G  +  G        + IG
Sbjct: 65  VMTSGAQAAIA--LLTAGSTLARRLL----SHPKPVIVACTGHAIAKGAFLLLSADYRIG 118

Query: 183 ISGHGRYRIVTEKTL--LAMPENGIGL 207
           +  HG ++I   +    + MP   I L
Sbjct: 119 V--HGPFKIGLNEVAIGMTMPHAAIEL 143

Length = 229

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	414
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PLN02921	327	naphthoate synthase	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.79
PF13766	118	ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PD	99.79
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.78
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.63
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.5
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.5
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.47
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.44
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.4
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.34
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.19
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.15
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	98.9
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	98.6
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	98.58
PRK10949	618	protease 4; Provisional	98.51
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.43
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.28
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.26
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	98.24
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	98.24
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	98.16
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	98.12
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	98.1
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	98.07
PRK11778	330	putative inner membrane peptidase; Provisional	98.06
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	98.06
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	98.06
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	98.05
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	97.99
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	97.97
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	97.97
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	97.83
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	97.81
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	97.75
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	97.75
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	97.5
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.43
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.38
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	97.3
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.3
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	97.18
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	97.17
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	97.11
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	97.1
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	96.75
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.74
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	95.84
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	95.73
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	95.67
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	95.55
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	95.42
PRK10949	618	protease 4; Provisional	94.88
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	91.49
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	91.15
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	91.03
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	81.71

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.1e-63  Score=501.88  Aligned_cols=326  Identities=33%  Similarity=0.565  Sum_probs=282.1

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      .+.|.++. .+++++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|+| ++||+|+|++++...... ...
T Consensus        41 ~~~v~~e~-~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~G-kaFcAGgDl~~l~~~~~~-~~~  117 (407)
T PLN02851         41 QDQVLVEG-RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGADVVSLYHLINE-GNV  117 (407)
T ss_pred             CCCeEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHHhhccc-cch
Confidence            45677776 789999999999999999999999999999999999999999999998 899999999998653211 111


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      .....++..++.+++.|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|. 
T Consensus       118 ~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-  196 (407)
T PLN02851        118 EECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-  196 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-
Confidence            2344577888889999999999999999999999999999999999999999999999999999999999999999994 


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCC-CCcchhhhhHHHHH
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP-EGEAPLKLLLPQIT  303 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~i~  303 (414)
                       .+++|+|||++++ |+||+++||++++||++++....+.+.+. . ..+...+...+++|.... +....+......|+
T Consensus       197 -~g~~L~LTG~~i~-a~eA~~~GLa~~~v~~~~l~~l~~~l~~~-~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~  272 (407)
T PLN02851        197 -LGEYLALTGQKLN-GVEMIACGLATHYCLNARLPLIEERLGKL-L-TDDPAVIEDSLAQYGDLVYPDKSSVLHKIETID  272 (407)
T ss_pred             -HHHHHHHhCCcCC-HHHHHHCCCceeecCHhhHHHHHHHHHhh-c-cCCHHHHHHHHHHhccccCCCcccHHHHHHHHH
Confidence             6999999999999 99999999999999999986554444433 2 234456888999997542 22344555688999


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                      +||+.+ ++++|+++|+.+.+.   ...+|++++++.|.++||+|+++|+++++++.         ..+|++++++|+++
T Consensus       273 ~~F~~~-sv~~I~~~L~~~~~~---~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~---------~~sl~e~l~~E~~l  339 (407)
T PLN02851        273 KCFGHD-TVEEIIEALENEAAS---SYDEWCKKALKKIKEASPLSLKVTLQSIREGR---------FQTLDQCLAREYRI  339 (407)
T ss_pred             HHhCCC-CHHHHHHHHHhcccc---cchHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Confidence            999987 999999999975321   01589999999999999999999999999987         57999999999999


Q ss_pred             HHHhC---CCchHHHHHHhhHhCCCCCCCCC
Q 015014          384 ALRSS---LRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       384 ~~~~~---~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      ..+++   .++||.|||||.||||+++|+|-
T Consensus       340 ~~~~~~~~~~~DF~EGVRA~LIDKd~~P~W~  370 (407)
T PLN02851        340 SLCGVSKWVSGDFCEGVRARLVDKDFAPKWD  370 (407)
T ss_pred             HHHHHhcCccchHHHHHHHHhcCCCCCCCCC
Confidence            99987   58999999999999999999973

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=2.1e-64  Score=481.42  Aligned_cols=328  Identities=50%  Similarity=0.773  Sum_probs=303.2

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      .+.|.++. ++...+||||||+++||||.+|+..+.-.|..|+.++.+++||+.|+|+++||||+|++...... .+...
T Consensus        37 ~~~VL~e~-~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~-~d~~~  114 (401)
T KOG1684|consen   37 KDQVLVEG-KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESI-KDKET  114 (401)
T ss_pred             CCceEEec-CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHh-hcCCc
Confidence            45678876 78999999999999999999999999999999999999999999999889999999999766544 33445


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      +....+|..+|.+++.|.++.||+||.+||..||||++|+++.-||||||++.|+|||+.||++||+|++|+|+|++|  
T Consensus       115 ~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg--  192 (401)
T KOG1684|consen  115 PEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG--  192 (401)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc--
Confidence            577889999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCc-chhhhhHHHHH
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGE-APLKLLLPQIT  303 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~i~  303 (414)
                      ..+.||.|||.+++ +.||+..||++|+||.+++....++|. ..+..+|...+.+.|.+|...+.++ ..+....+.|+
T Consensus       193 ~lg~YLgLTG~rl~-GaD~~~~GlATHyv~S~~l~~Lee~L~-~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~  270 (401)
T KOG1684|consen  193 YLGLYLGLTGQRLS-GADALRCGLATHYVPSEKLPSLEERLL-KNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVIN  270 (401)
T ss_pred             HHHHhhhhccceec-chHHHHhcchhhccchhhhhHHHHHHh-hhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHH
Confidence            48999999999999 899999999999999999999999988 5778888899999999999886544 45567999999


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                      +||+.+ ||+||++.|++.++  ..++.+||++++++|.++||+|+++|.++++.+.         ..++++++.+|+++
T Consensus       271 ~~Fs~~-tVeeIie~lk~~q~--~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs---------~~tl~~~l~~Eyr~  338 (401)
T KOG1684|consen  271 KCFSAN-TVEEIIEALKNYQQ--SADGSEWAKETLKTLKKMSPTSLKVTLRQIREGS---------KQTLDQCLTMEYRL  338 (401)
T ss_pred             Hhhccc-cHHHHHHHHHHHhh--hhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhh---------HHHHHHHHHHHHHH
Confidence            999888 99999999988776  3345899999999999999999999999999987         67999999999999


Q ss_pred             HHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          384 ALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ..+...++||.|||||.|+||+++|+|
T Consensus       339 s~~~~~~~DF~EGvRA~LIDKd~~PKW  365 (401)
T KOG1684|consen  339 SLRMLMRGDFCEGVRAVLIDKDQNPKW  365 (401)
T ss_pred             HHHHhhccchhhhhhheeecCCcCCCC
Confidence            999999999999999999999999997

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=1.6e-63  Score=499.30  Aligned_cols=325  Identities=36%  Similarity=0.603  Sum_probs=278.5

Q ss_pred             ccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCC
Q 015014           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (414)
Q Consensus        66 ~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (414)
                      ..|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++...... ....
T Consensus         9 ~~v~~~~-~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G-~~FcAGgDl~~l~~~~~~-~~~~   85 (381)
T PLN02988          9 SQVLVEE-KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVRDIEQ-GNWR   85 (381)
T ss_pred             CceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCcccCcCHHHHHhhhcc-cchh
Confidence            3477775 799999999999999999999999999999999999999999999998 899999999998642211 1111


Q ss_pred             chHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHH
Q 015014          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (414)
Q Consensus       146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~  225 (414)
                      ....++...+.+...|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.  
T Consensus        86 ~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~--  163 (381)
T PLN02988         86 LGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF--  163 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH--
Confidence            223356666777788999999999999999999999999999999999999999999999999999999999999993  


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCC-CcchhhhhHHHHHh
Q 015014          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE-GEAPLKLLLPQITS  304 (414)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~i~~  304 (414)
                      .+++|+|||++++ |+||+++|||+++||+++++..+.++++. .. .+...+...++.+...+. ...........|++
T Consensus       164 ~~~~l~LTG~~i~-a~eA~~~GLv~~vv~~~~l~~~~~~la~~-~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~  240 (381)
T PLN02988        164 FGEYVGLTGARLD-GAEMLACGLATHFVPSTRLTALEADLCRI-GS-NDPTFASTILDAYTQHPRLKPQSAYHRLDVIDR  240 (381)
T ss_pred             HHHHHHHcCCCCC-HHHHHHcCCceEecCHhHHHHHHHHHHHh-hc-cCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Confidence            7999999999999 99999999999999999999988888733 22 344446666776654432 12233346889999


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                      ||+.+ ++++|+++|+++.+..   ..+|++++++.|.++||+|+++|+++++++.         ..++.+++++|+++.
T Consensus       241 ~f~~~-~~~~i~~~L~~~~~~~---~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~---------~~sl~e~~~~e~~~~  307 (381)
T PLN02988        241 CFSRR-TVEEIISALEREATQE---ADGWISATIQALKKASPASLKISLRSIREGR---------LQGVGQCLIREYRMV  307 (381)
T ss_pred             HhCCC-CHHHHHHHHHhhcccc---ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Confidence            99987 9999999999852100   1589999999999999999999999999987         679999999999999


Q ss_pred             HHhCC---CchHHHHHHhhHhCCCCCCCCC
Q 015014          385 LRSSL---RSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       385 ~~~~~---~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      .+++.   ++||.|||||.||||+++|+|-
T Consensus       308 ~~~~~~~~~~DF~EGVRA~LiDKd~~P~W~  337 (381)
T PLN02988        308 CHVMKGEISKDFVEGCRAILVDKDKNPKWE  337 (381)
T ss_pred             HHHHhcCCCchHHHhHHHHhcCCCCCCCCC
Confidence            99987   6999999999999999999973

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=8.6e-63  Score=495.66  Aligned_cols=326  Identities=31%  Similarity=0.549  Sum_probs=275.1

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      .+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|+| ++||+|+|++++....... ..
T Consensus        36 ~~~V~~e~-~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~G-kaFcAGgDl~~l~~~~~~~-~~  112 (401)
T PLN02157         36 DYQVLVEG-SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG-RAFCAGGDIVSLYHLRKRG-SP  112 (401)
T ss_pred             CCceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCccCCcCHHHHHhhcccc-ch
Confidence            34467776 789999999999999999999999999999999999999999999998 8999999999986532111 11


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      .....++...+.+++.|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .
T Consensus       113 ~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G-~  191 (401)
T PLN02157        113 DAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPG-R  191 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhh-H
Confidence            122346666677888999999999999999999999999999999999999999999999999999999999999999 3


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCC-CCCcchhhhhHHHHH
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSD-PEGEAPLKLLLPQIT  303 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~i~  303 (414)
                       .+++|+|||++++ |+||+++|||+++||++++. .+.+++....... ...+....+.+... ......+......|+
T Consensus       192 -~a~~L~LTG~~i~-A~eA~~~GLv~~vVp~~~l~-~~~~~~~~i~~~~-p~av~~~k~~~~~~~~~~~~~l~~~~~~i~  267 (401)
T PLN02157        192 -LGEYLGLTGLKLS-GAEMLACGLATHYIRSEEIP-VMEEQLKKLLTDD-PSVVESCLEKCAEVAHPEKTGVIRRIDLLE  267 (401)
T ss_pred             -HHHHHHHcCCcCC-HHHHHHcCCceEEeCHhHHH-HHHHHHHHHHcCC-HHHHHHHHHHHhcccCCcchhHHHHHHHHH
Confidence             7999999999999 99999999999999999985 4456665544433 33344444444322 222344555678999


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                      +||+.+ +++||+++|+.+.++..   .+|++++++.|.++||+|+++|+++++++.         ..+|++++++|+++
T Consensus       268 ~~f~~~-d~~ei~~al~~~~~kr~---~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~---------~~~l~e~~~~e~~~  334 (401)
T PLN02157        268 KCFSHD-TVEEIIDSLEIEAGRRK---DTWCITTLRRLKESSPLSLKVALRSIREGR---------LQTLDQCLIREYRM  334 (401)
T ss_pred             HHhcCC-CHHHHHHHHHhhhcccc---hHHHHHHHHHHHhcCcHHHHHHHHHHHHhh---------cCCHHHHHHHHHHH
Confidence            999977 99999999986532211   589999999999999999999999999987         56999999999999


Q ss_pred             HHHhCC---CchHHHHHHhhHhCCCCCCCCC
Q 015014          384 ALRSSL---RSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       384 ~~~~~~---~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      ..+++.   ++||.|||||.||||+++|+|-
T Consensus       335 ~~~~~~~~~~~DF~EGVRA~LiDKd~~P~W~  365 (401)
T PLN02157        335 SLQGLIGPMSGNFCEGVRARLIDKDEAPKWD  365 (401)
T ss_pred             HHHHHhcCCCchHHHHHHHHHcCCCCCCCCC
Confidence            999885   6999999999999999999973

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=6e-60  Score=475.11  Aligned_cols=325  Identities=33%  Similarity=0.571  Sum_probs=278.6

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      +++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++.....   .
T Consensus         9 ~~~~v~~~~-~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~---~   83 (379)
T PLN02874          9 AEEVVLGEE-KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAG-RAFSAGGDLKMFYDGRE---S   83 (379)
T ss_pred             CCCceEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCccCHHHHHhhcc---c
Confidence            456677876 799999999999999999999999999999999999999999999997 89999999998754210   1


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      ......++...+.+...|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| 
T Consensus        84 ~~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g-  162 (379)
T PLN02874         84 DDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPG-  162 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhH-
Confidence            1112223444456677899999999999999999999999999999999999999999999999999999999999988 


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCC-CCcchhhhhHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP-EGEAPLKLLLPQI  302 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~i  302 (414)
                      . ++++|+|||++++ |+||+++|||+++||++++.+.+.++.+.  ...+...+++++++|.... ..........+.|
T Consensus       163 ~-~a~~l~ltG~~i~-a~eA~~~GLv~~vv~~~~l~~~~~~l~~l--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i  238 (379)
T PLN02874        163 H-LGEYLALTGARLN-GKEMVACGLATHFVPSEKLPELEKRLLNL--NSGDESAVQEAIEEFSKDVQADEDSILNKQSWI  238 (379)
T ss_pred             H-HHHHHHHcCCccc-HHHHHHcCCccEEeCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHhhcccCCCcchhHHHHHHH
Confidence            4 7999999999999 99999999999999998887755555433  2344577899999887543 3344555668999


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                      .+||+.+ ++.+|+++|+++.+...   .+||.+++++|+++||+|++++|++++++.         ..+++++++.|++
T Consensus       239 ~~~f~~~-~~~eii~al~~~~~~~~---~~~A~~~a~~l~~~sP~al~~tk~~~~~~~---------~~~l~~~l~~e~~  305 (379)
T PLN02874        239 NECFSKD-TVEEIIKAFESEASKTG---NEWIKETLKGLRRSSPTGLKITLRSIREGR---------KQSLAECLKKEFR  305 (379)
T ss_pred             HHHhCCC-CHHHHHHHHhhcccccc---cHHHHHHHHHHHhcChHHHHHHHHHHHHhc---------cCCHHHHHHHHHH
Confidence            9999987 99999999998643222   589999999999999999999999999876         5689999999999


Q ss_pred             HHHHhCC---CchHHHHHHhhHhCCCCCCCCC
Q 015014          383 VALRSSL---RSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       383 ~~~~~~~---~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      .....+.   ++||+|||+||++||+++|+|-
T Consensus       306 ~~~~~~~~~~~~D~~EGv~AflidK~r~P~w~  337 (379)
T PLN02874        306 LTMNILRSTVSDDVYEGIRALVIDKDNAPKWN  337 (379)
T ss_pred             HHHHHHhcCcCcchhhccceEEEcCCCCCCCC
Confidence            9888777   9999999999999999999873

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=1e-59  Score=467.96  Aligned_cols=320  Identities=41%  Similarity=0.685  Sum_probs=281.4

Q ss_pred             cEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCc
Q 015014           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (414)
Q Consensus        67 ~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (414)
                      .|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++..... ......
T Consensus         4 ~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~-~~~~~~   81 (342)
T PRK05617          4 EVLAEV-EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAAR-AGDPLA   81 (342)
T ss_pred             eEEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhc-cCCchh
Confidence            467775 799999999999999999999999999999999999999999999998789999999998754221 111111


Q ss_pred             hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHH
Q 015014          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~  226 (414)
                      ...++...+.++..+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++| . +
T Consensus        82 ~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~-~  159 (342)
T PRK05617         82 ADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-A-L  159 (342)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-H-H
Confidence            1134445556778899999999999999999999999999999999999999999999999999999999999977 5 8


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhc
Q 015014          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF  306 (414)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F  306 (414)
                      +++|++||+.++ |+||+++|||++++|++++.....++++..+ .+..+.++..+.+|....+. ..+......|++||
T Consensus       160 a~~llltG~~i~-A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~  236 (342)
T PRK05617        160 GTYLALTGARIS-AADALYAGLADHFVPSADLPALLDALISLRW-DSGADVVDAALAAFATPAPA-SELAAQRAWIDECF  236 (342)
T ss_pred             HHHHHHcCCCCC-HHHHHHcCCcceecCHHHHHHHHHHHHhcCC-ccchhHHHHHHHHhccCCCc-chhHHHHHHHHHHh
Confidence            999999999999 9999999999999999988876666665533 44556788899998877544 47888999999999


Q ss_pred             CCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHH
Q 015014          307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALR  386 (414)
Q Consensus       307 ~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~  386 (414)
                      +.. ++++|+++|+++.       .+|+.+++++|+++||.+++.+|+++++..         ..+++++++.|.+.+..
T Consensus       237 ~~~-~~~~~~~~l~~~~-------~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~---------~~~l~~~~~~e~~~~~~  299 (342)
T PRK05617        237 AGD-TVEDIIAALEADG-------GEFAAKTADTLRSRSPTSLKVTLEQLRRAR---------GLTLEECLRRELRLALA  299 (342)
T ss_pred             CCC-CHHHHHHHHHhcc-------HHHHHHHHHHHHhCCcHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHH
Confidence            986 9999999999996       589999999999999999999999999876         56899999999999999


Q ss_pred             hCCCchHHHHHHhhHhCCCCCCCC
Q 015014          387 SSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       387 ~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .+.++|++|||++|+++|+|+|+|
T Consensus       300 ~~~~~d~~egv~afl~ek~r~p~~  323 (342)
T PRK05617        300 MLRSPDFVEGVRAVLIDKDRNPKW  323 (342)
T ss_pred             HHhCCchhhccceEEEcCCCCCCC
Confidence            999999999999998777788887

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-55  Score=409.57  Aligned_cols=256  Identities=25%  Similarity=0.334  Sum_probs=224.1

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      +..+.....+++|+.|+||||+++|+|+..|+.+|.+++..++.|+++.++||||.| ++||+|+||+++......+.. 
T Consensus        35 ~~~~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~g-ksFcsG~Dl~e~~~~~~~~~~-  112 (290)
T KOG1680|consen   35 PIKIELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSG-KSFCSGADLKEMKKDEFQDVS-  112 (290)
T ss_pred             cceeEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCC-CccccccCHHHHhhccccccc-
Confidence            333444444789999999999999999999999999999999999999999999998 999999999998864322211 


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                         ...+..   .+..+.+.+||+||+|||+|+|||++|+++||+|||+++|+|++|+.++|++|.+|||++|+|.+|++
T Consensus       113 ---~~~~~~---~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s  186 (290)
T KOG1680|consen  113 ---DGIFLR---VWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKS  186 (290)
T ss_pred             ---cccccc---hhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChH
Confidence               112222   22334489999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       +|+++++||++++ |+||+++|||++|||.+++...+..|                                       
T Consensus       187 -~Ale~~ltg~~~~-AqeA~~~GlVn~Vvp~~~~l~eAv~l---------------------------------------  225 (290)
T KOG1680|consen  187 -RALEMILTGRRLG-AQEAKKIGLVNKVVPSGDALGEAVKL---------------------------------------  225 (290)
T ss_pred             -HHHHHHHhcCccc-HHHHHhCCceeEeecchhHHHHHHHH---------------------------------------
Confidence             9999999999999 99999999999999999876544433                                       


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                                                   ++    +|+++||..++..|+.++.+.         ..++.+.++.|.+.+
T Consensus       226 -----------------------------~~----~Ia~~~~~~v~~~K~svn~~~---------e~~l~e~l~~e~~~~  263 (290)
T KOG1680|consen  226 -----------------------------AE----QIAKNSPLVVRADKESVNAAY---------ETTLFEGLELERDLF  263 (290)
T ss_pred             -----------------------------HH----HHHhCCHHHHHHHHHHHHHHh---------hccHHHHHHhhhhhh
Confidence                                         33    599999999999999999976         678999999999999


Q ss_pred             HHhCCCchHHHHHHhhHhCCCCCCCCCcC
Q 015014          385 LRSSLRSDFAEGVRAVLVDKDQVLSQLKL  413 (414)
Q Consensus       385 ~~~~~~~D~~eGv~afl~dk~~~P~~~~~  413 (414)
                      ...+..+|.+|||.+|.  ++|+|+|-|.
T Consensus       264 ~s~~~~~d~~Eg~~~f~--~kr~~~~~k~  290 (290)
T KOG1680|consen  264 GSTFATEDRLEGMTAFA--EKRKPKFSKK  290 (290)
T ss_pred             hhhhhhHHHHHHHHHhc--ccCCcccccC
Confidence            99999999999999998  7888888663

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.1e-54  Score=413.63  Aligned_cols=257  Identities=25%  Similarity=0.342  Sum_probs=226.1

Q ss_pred             cEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCc
Q 015014           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (414)
Q Consensus        67 ~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (414)
                      .|.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++..... ......
T Consensus         4 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~~   81 (260)
T PRK05980          4 TVLIEI-RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVA-AGADVA   81 (260)
T ss_pred             eEEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhcc-ccchhh
Confidence            477775 799999999999999999999999999999999999999999999998679999999998754211 011112


Q ss_pred             hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHH
Q 015014          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~  226 (414)
                      ...++.....++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~  160 (260)
T PRK05980         82 LRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRK-R  160 (260)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHH-H
Confidence            233444455677889999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhc
Q 015014          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF  306 (414)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F  306 (414)
                      +++|++||++++ |+||+++||||++||++++.+.+.+++                                        
T Consensus       161 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a----------------------------------------  199 (260)
T PRK05980        161 ALELLLTGDAFS-AERALEIGLVNAVVPHEELLPAARALA----------------------------------------  199 (260)
T ss_pred             HHHHHHcCCccC-HHHHHHcCCCCcccCHHHHHHHHHHHH----------------------------------------
Confidence            999999999999 999999999999999887765444433                                        


Q ss_pred             CCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHH
Q 015014          307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALR  386 (414)
Q Consensus       307 ~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~  386 (414)
                                                      ++|++.||.+++.+|+.++...         ..++.++++.|...+..
T Consensus       200 --------------------------------~~la~~~p~a~~~~K~~~~~~~---------~~~~~~~~~~e~~~~~~  238 (260)
T PRK05980        200 --------------------------------RRIIRHSPVAVAAILTAVTRGL---------NLSIAEGLLIESEQFAR  238 (260)
T ss_pred             --------------------------------HHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHH
Confidence                                            3489999999999999999876         56799999999999999


Q ss_pred             hCCCchHHHHHHhhHhCCCCCCCC
Q 015014          387 SSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       387 ~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .+.++|++||+.+|+  ++++|+|
T Consensus       239 ~~~~~~~~e~~~af~--~kr~p~~  260 (260)
T PRK05980        239 MAGSADLREGLAAWI--ERRRPAY  260 (260)
T ss_pred             HhcChhHHHHHHHHh--ccCCCCC
Confidence            999999999999999  6777875

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.2e-54  Score=410.50  Aligned_cols=253  Identities=23%  Similarity=0.286  Sum_probs=223.6

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      .++.+.++. +++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...      
T Consensus         2 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~------   73 (257)
T PRK05862          2 AYETILVET-RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSE-KAFAAGADIKEMADL------   73 (257)
T ss_pred             CCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CceECCcChHhHhcc------
Confidence            345677876 789999999999999999999999999999999999999999999997 899999999987531      


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                       +....+......++.+|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        74 -~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  152 (257)
T PRK05862         74 -SFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGK  152 (257)
T ss_pred             -chhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCH
Confidence             1111122333456678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|++||+.++ |+||+++||||+++|++++.+.+.++++                                    
T Consensus       153 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~------------------------------------  194 (257)
T PRK05862        153 A-KAMDLCLTGRMMD-AAEAERAGLVSRVVPADKLLDEALAAAT------------------------------------  194 (257)
T ss_pred             H-HHHHHHHhCCccC-HHHHHHcCCCCEeeCHhHHHHHHHHHHH------------------------------------
Confidence            8 9999999999999 9999999999999998887655444433                                    


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                          +|++.||.+++.+|++++...         ..++.++++.|.+.
T Consensus       195 ------------------------------------~l~~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~  229 (257)
T PRK05862        195 ------------------------------------TIASFSLPAVMMAKEAVNRAY---------ETTLAEGLLFERRL  229 (257)
T ss_pred             ------------------------------------HHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Confidence                                                488999999999999999876         56899999999999


Q ss_pred             HHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          384 ALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +...+.++|++||+++|+  ++++|.|
T Consensus       230 ~~~~~~s~~~~e~i~af~--~kr~p~~  254 (257)
T PRK05862        230 FHSLFATEDQKEGMAAFV--EKRKPVF  254 (257)
T ss_pred             HHHHhcChhHHHHHHHHh--ccCCCCC
Confidence            999999999999999999  6667765

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-53  Score=409.36  Aligned_cols=252  Identities=22%  Similarity=0.284  Sum_probs=222.6

Q ss_pred             cEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCc
Q 015014           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (414)
Q Consensus        67 ~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (414)
                      .+.++. +++|++||||||++ |++|.+|+.+|.++++.+++|+++|+|||+|.|+++||+|+|++++...     +...
T Consensus         4 ~v~~~~-~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~-----~~~~   76 (258)
T PRK09076          4 ELDLEI-DGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADG-----DKAV   76 (258)
T ss_pred             EEEEEE-ECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhc-----Chhh
Confidence            477776 78999999999986 9999999999999999999999999999999987799999999987531     1111


Q ss_pred             hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHH
Q 015014          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~  226 (414)
                      ...+......++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~-~  155 (258)
T PRK09076         77 AREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEG-W  155 (258)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHH-H
Confidence            122333445677889999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhc
Q 015014          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF  306 (414)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F  306 (414)
                      +++|++||+.++ |+||+++|||++|||++++.+.+.+++                                        
T Consensus       156 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a----------------------------------------  194 (258)
T PRK09076        156 AKRMILCGERVD-AATALRIGLVEEVVEKGEAREAALALA----------------------------------------  194 (258)
T ss_pred             HHHHHHcCCcCC-HHHHHHCCCCceecCchhHHHHHHHHH----------------------------------------
Confidence            999999999999 999999999999999987765444433                                        


Q ss_pred             CCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHH
Q 015014          307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALR  386 (414)
Q Consensus       307 ~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~  386 (414)
                                                      ++|++.||.+++.+|++++...         ..++++.++.|...+..
T Consensus       195 --------------------------------~~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~  233 (258)
T PRK09076        195 --------------------------------QKVANQSPSAVAACKTLIQAAR---------NGPRAAALALERELFVD  233 (258)
T ss_pred             --------------------------------HHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHH
Confidence                                            3599999999999999999875         56799999999999999


Q ss_pred             hCCCchHHHHHHhhHhCCCCCCCC
Q 015014          387 SSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       387 ~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ++.++|++||+++|+  ++++|+|
T Consensus       234 ~~~~~~~~eg~~af~--~kr~p~~  255 (258)
T PRK09076        234 LFDTEDQREGVNAFL--EKRAPQW  255 (258)
T ss_pred             HhcCchHHHHHHHHh--cCCCCCC
Confidence            999999999999999  6677775

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=1.1e-53  Score=410.55  Aligned_cols=257  Identities=26%  Similarity=0.310  Sum_probs=226.9

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      |+++.+.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++....    
T Consensus         1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~----   75 (260)
T PRK05809          1 MELKNVILEK-EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLN----   75 (260)
T ss_pred             CCcceEEEEE-eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccC----
Confidence            4567788886 78999999999999999999999999999999999999999999999768999999999875411    


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                       ......+......++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|
T Consensus        76 -~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  154 (260)
T PRK05809         76 -EEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVG  154 (260)
T ss_pred             -hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhC
Confidence             1111223333456777899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||+.++ |+||+++|||++++|++++.+.+.+++                                    
T Consensus       155 ~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a------------------------------------  196 (260)
T PRK05809        155 PG-KAKELIYTGDMIN-AEEALRIGLVNKVVEPEKLMEEAKALA------------------------------------  196 (260)
T ss_pred             HH-HHHHHHHhCCCCC-HHHHHHcCCCCcccChHHHHHHHHHHH------------------------------------
Confidence            98 9999999999999 999999999999999887755443333                                    


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                                                          ++|++.||.+++.+|+.+++..         ..++.++++.|.+
T Consensus       197 ------------------------------------~~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~  231 (260)
T PRK05809        197 ------------------------------------NKIAANAPIAVKLCKDAINRGM---------QVDIDTAVAIEAE  231 (260)
T ss_pred             ------------------------------------HHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHH
Confidence                                                3589999999999999999876         5679999999999


Q ss_pred             HHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          383 VALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       383 ~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .+..++.++|++||+++|+  ++++|+|
T Consensus       232 ~~~~~~~~~~~~egi~af~--~~r~p~~  257 (260)
T PRK05809        232 DFGECFSTEDQTEGMTAFV--EKREKNF  257 (260)
T ss_pred             HHHHHhcCHHHHHHHHHHh--cCCCCCC
Confidence            9999999999999999999  6677775

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-53  Score=411.22  Aligned_cols=258  Identities=22%  Similarity=0.260  Sum_probs=227.4

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      +.+.|.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++....   ..
T Consensus         9 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~---~~   84 (269)
T PRK06127          9 PTGKLLAEK-TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESR---SD   84 (269)
T ss_pred             CCCceEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcc---cc
Confidence            456688886 78999999999999999999999999999999999999999999999867999999999875321   11


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      .+....+......++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        85 ~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  164 (269)
T PRK06127         85 AEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGP  164 (269)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCH
Confidence            11122344445567788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|++||+.++ |+||+++|||++|||++++.+.+.++++                                    
T Consensus       165 ~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~------------------------------------  206 (269)
T PRK06127        165 S-AAKDLFYTARRFD-AAEALRIGLVHRVTAADDLETALADYAA------------------------------------  206 (269)
T ss_pred             H-HHHHHHHcCCCCC-HHHHHHcCCCCEeeCHHHHHHHHHHHHH------------------------------------
Confidence            8 9999999999999 9999999999999998887665544433                                    


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                          +|++.||.+++.+|++++...         ..++++.++.|...
T Consensus       207 ------------------------------------~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~  241 (269)
T PRK06127        207 ------------------------------------TIAGNAPLTLRAAKRAIAELL---------KDEPERDMAACQAL  241 (269)
T ss_pred             ------------------------------------HHHhCCHHHHHHHHHHHHHhc---------cCCHHHHHHHHHHH
Confidence                                                488999999999999999876         56799999999999


Q ss_pred             HHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          384 ALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +..++.++|++||+.+|+  ++++|+|
T Consensus       242 ~~~~~~~~d~~e~~~af~--ekr~p~~  266 (269)
T PRK06127        242 VAACFDSEDYREGRAAFM--EKRKPVF  266 (269)
T ss_pred             HHHHhcChHHHHHHHHHh--cCCCCCC
Confidence            999999999999999999  6677775

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=1.3e-53  Score=408.04  Aligned_cols=247  Identities=23%  Similarity=0.347  Sum_probs=220.7

Q ss_pred             cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHH
Q 015014           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA  153 (414)
Q Consensus        74 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (414)
                      +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++...     .......+...
T Consensus         2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~-----~~~~~~~~~~~   76 (251)
T PLN02600          2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKM-----SPSEVQKFVNS   76 (251)
T ss_pred             CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhcc-----ChHHHHHHHHH
Confidence            5889999999999999999999999999999999999999999999866899999999987531     11122334444


Q ss_pred             HHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhc
Q 015014          154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT  233 (414)
Q Consensus       154 ~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~lt  233 (414)
                      ...++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. ++++|++|
T Consensus        77 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~-~a~~l~lt  155 (251)
T PLN02600         77 LRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRS-RAKELIFT  155 (251)
T ss_pred             HHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHH-HHHHHHHh
Confidence            55677889999999999999999999999999999999999999999999999999999999999999998 99999999


Q ss_pred             CCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcCCcccHH
Q 015014          234 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVR  313 (414)
Q Consensus       234 G~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~sv~  313 (414)
                      |+.++ |+||+++||||++||++++.+.+.+++                                               
T Consensus       156 g~~~~-a~eA~~~Glv~~vv~~~~~~~~a~~~a-----------------------------------------------  187 (251)
T PLN02600        156 GRRIG-AREAASMGLVNYCVPAGEAYEKALELA-----------------------------------------------  187 (251)
T ss_pred             CCccC-HHHHHHcCCCcEeeChhHHHHHHHHHH-----------------------------------------------
Confidence            99999 999999999999999888765443333                                               


Q ss_pred             HHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHhCCCchH
Q 015014          314 QIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDF  393 (414)
Q Consensus       314 ~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~  393 (414)
                                               ++|++.||.+++.+|++++...         ..++.+.++.|.+.+..++.++|+
T Consensus       188 -------------------------~~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~d~  233 (251)
T PLN02600        188 -------------------------QEINQKGPLAIKMAKKAINEGS---------EVDMASGLEIEEECYEQVLKTKDR  233 (251)
T ss_pred             -------------------------HHHHhCCHHHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHHHhCCHHH
Confidence                                     3599999999999999999875         568999999999999999999999


Q ss_pred             HHHHHhhHhCCCCCCCC
Q 015014          394 AEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       394 ~eGv~afl~dk~~~P~~  410 (414)
                      +|||++|+  ++++|+|
T Consensus       234 ~eg~~af~--ekr~p~~  248 (251)
T PLN02600        234 LEGLAAFA--EKRKPVY  248 (251)
T ss_pred             HHHHHHHh--cCCCCCC
Confidence            99999999  6677875

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-53  Score=412.16  Aligned_cols=259  Identities=20%  Similarity=0.279  Sum_probs=225.0

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhh--C-
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQK--D-  141 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~--~-  141 (414)
                      ++.+.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++......  . 
T Consensus         5 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~~~~   82 (272)
T PRK06142          5 YESFTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSG-KHFSYGIDLPAMAGVFGQLGKD   82 (272)
T ss_pred             cceEEEEe-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhhhccccccc
Confidence            56788886 799999999999999999999999999999999999999999999997 899999999987542100  0 


Q ss_pred             ---CCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHh
Q 015014          142 ---RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA  218 (414)
Q Consensus       142 ---~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~  218 (414)
                         ........+.....+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~  162 (272)
T PRK06142         83 GLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLP  162 (272)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHH
Confidence               00111122333445677789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCC-CCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhh
Q 015014          219 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKL  297 (414)
Q Consensus       219 r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  297 (414)
                      +++|.. ++++|++||++++ |+||+++||||++||+ +++.+.+.+++                               
T Consensus       163 ~~~G~~-~a~~l~l~g~~~~-a~eA~~~GLv~~vv~~~~~l~~~a~~~a-------------------------------  209 (272)
T PRK06142        163 RIIGDG-HLRELALTGRDID-AAEAEKIGLVNRVYDDADALLAAAHATA-------------------------------  209 (272)
T ss_pred             HHhCHH-HHHHHHHhCCCcC-HHHHHHcCCccEecCCHHHHHHHHHHHH-------------------------------
Confidence            999998 9999999999999 9999999999999996 66655444333                               


Q ss_pred             hHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHH
Q 015014          298 LLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVM  377 (414)
Q Consensus       298 ~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l  377 (414)
                                                               ++|++.||.+++.+|+.+++..         ..++.+++
T Consensus       210 -----------------------------------------~~ia~~~~~a~~~~K~~l~~~~---------~~~l~~~~  239 (272)
T PRK06142        210 -----------------------------------------REIAAKSPLAVRGTKEVLDYMR---------DHRVADGL  239 (272)
T ss_pred             -----------------------------------------HHHHhCCHHHHHHHHHHHHHhh---------cCCHHHHH
Confidence                                                     3489999999999999999876         56799999


Q ss_pred             HHHHHHHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          378 KYEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       378 ~~e~~~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +.|...+...+.++|++|||++|+  ++++|+|
T Consensus       240 ~~~~~~~~~~~~~~d~~egv~af~--~kr~p~~  270 (272)
T PRK06142        240 RYVATWNAAMLPSKDLTEAIAAHM--EKRPPEF  270 (272)
T ss_pred             HHHHHHHHHHhcCccHHHHHHHHh--cCCCCCC
Confidence            999999999999999999999999  6777875

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-53  Score=408.52  Aligned_cols=255  Identities=23%  Similarity=0.320  Sum_probs=226.1

Q ss_pred             ccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCC
Q 015014           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (414)
Q Consensus        66 ~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (414)
                      +.|.++..+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++...     ...
T Consensus         3 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~-----~~~   77 (260)
T PRK07657          3 QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGM-----NEE   77 (260)
T ss_pred             ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcC-----Chh
Confidence            357777546899999999999999999999999999999999999999999999985699999999987531     111


Q ss_pred             chHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHH
Q 015014          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (414)
Q Consensus       146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~  225 (414)
                      ....+......++..|..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.+ 
T Consensus        78 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~-  156 (260)
T PRK07657         78 QVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG-  156 (260)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHH-
Confidence            1233444556678889999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhh
Q 015014          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (414)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~  305 (414)
                      ++++|++||++++ |+||+++|||+++||++++++.+.++++                                      
T Consensus       157 ~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~--------------------------------------  197 (260)
T PRK07657        157 RAKELIYTGRRIS-AQEAKEIGLVEFVVPAHLLEEKAIEIAE--------------------------------------  197 (260)
T ss_pred             HHHHHHHhCCCCC-HHHHHHcCCCCeecCHHHHHHHHHHHHH--------------------------------------
Confidence            9999999999999 9999999999999998887655444433                                      


Q ss_pred             cCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHH
Q 015014          306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL  385 (414)
Q Consensus       306 F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~  385 (414)
                                                        +|++.||.+++.+|+.++...         ..++.++++.|...+.
T Consensus       198 ----------------------------------~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~  234 (260)
T PRK07657        198 ----------------------------------KIASNGPIAVRQAKEAISNGI---------QVDLHTGLQIEKQAYE  234 (260)
T ss_pred             ----------------------------------HHHhCCHHHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHH
Confidence                                              489999999999999999876         5679999999999999


Q ss_pred             HhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          386 RSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       386 ~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ..+.++|++||+++|+  ++++|+|
T Consensus       235 ~~~~~~~~~e~~~af~--~~r~~~~  257 (260)
T PRK07657        235 GTIPTKDRLEGLQAFK--EKRKPMY  257 (260)
T ss_pred             HHhcCHhHHHHHHHHh--cCCCCCC
Confidence            9999999999999999  6677775

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-53  Score=407.55  Aligned_cols=254  Identities=22%  Similarity=0.322  Sum_probs=219.1

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      |.++.+.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++....   .
T Consensus         1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~---~   76 (259)
T PRK06494          1 MALPFSTVER-KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGG---K   76 (259)
T ss_pred             CCCceeEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcC---c
Confidence            3466788876 78999999999999999999999999999999999999999999999867999999999875321   0


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                       ...   ....... +..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|
T Consensus        77 -~~~---~~~~~~~-~~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg  151 (259)
T PRK06494         77 -RGW---PESGFGG-LTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIG  151 (259)
T ss_pred             -chh---hhHHHHH-HHHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcC
Confidence             000   0111112 23456899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||+.++ |+||+++||||++||++++.+.+.+++                                    
T Consensus       152 ~~-~a~~lll~g~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a------------------------------------  193 (259)
T PRK06494        152 LK-RAMGMILTGRRVT-AREGLELGFVNEVVPAGELLAAAERWA------------------------------------  193 (259)
T ss_pred             HH-HHHHHHHcCCcCC-HHHHHHcCCCcEecCHhHHHHHHHHHH------------------------------------
Confidence            98 9999999999999 999999999999999887765444433                                    


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHH--
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE--  380 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e--  380 (414)
                                                          ++|++.||.+++.+|+++++..         ..++++.++.|  
T Consensus       194 ------------------------------------~~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~  228 (259)
T PRK06494        194 ------------------------------------DDILACSPLSIRASKQAVYRGL---------EVSLEEAITAQRD  228 (259)
T ss_pred             ------------------------------------HHHHhcCHHHHHHHHHHHHHhc---------cCCHHHHHHHHHH
Confidence                                                3499999999999999999876         56799999999  


Q ss_pred             HHHHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          381 YRVALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       381 ~~~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ...+..++.++|++||+++|+  ++++|+|
T Consensus       229 ~~~~~~~~~~~d~~eg~~af~--~kr~p~~  256 (259)
T PRK06494        229 YPAVEARRASQDYIEGPKAFA--EKRPPRW  256 (259)
T ss_pred             HHHHHHHhcCccHHHHHHHHH--ccCCCCC
Confidence            556778889999999999999  5677775

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=2.8e-53  Score=406.63  Aligned_cols=250  Identities=21%  Similarity=0.309  Sum_probs=221.1

Q ss_pred             cEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCc
Q 015014           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (414)
Q Consensus        67 ~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (414)
                      .|.++. +++|++||||||+++|+||.+|+.+|.++++.+++|+++|+|||+|.| ++||+|+|++++...   +    .
T Consensus         3 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~---~----~   73 (255)
T PRK09674          3 ELLVSR-QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNA-RFFAAGADLNEMAEK---D----L   73 (255)
T ss_pred             eEEEEe-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecccChHhHhcc---c----h
Confidence            466765 789999999999999999999999999999999999999999999997 899999999987531   1    0


Q ss_pred             hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHH
Q 015014          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~  226 (414)
                      ...+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        74 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~-~  152 (255)
T PRK09674         74 AATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKS-L  152 (255)
T ss_pred             hhhHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHH-H
Confidence            111222234567789999999999999999999999999999999999999999999999999999999999999997 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhc
Q 015014          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF  306 (414)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F  306 (414)
                      +++|++||+.++ |+||+++||||+|||++++.+.+.++                                         
T Consensus       153 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~~~~~a~~~-----------------------------------------  190 (255)
T PRK09674        153 ASQMVLTGESIT-AQQAQQAGLVSEVFPPELTLERALQL-----------------------------------------  190 (255)
T ss_pred             HHHHHHcCCccC-HHHHHHcCCCcEecChHHHHHHHHHH-----------------------------------------
Confidence            999999999999 99999999999999988775443333                                         


Q ss_pred             CCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHH
Q 015014          307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALR  386 (414)
Q Consensus       307 ~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~  386 (414)
                                                     +++|++.||.+++.+|+.++...         ..++.+.++.|.+.+..
T Consensus       191 -------------------------------a~~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~  230 (255)
T PRK09674        191 -------------------------------ASKIARHSPLALRAAKQALRQSQ---------EVDLQAGLAQERQLFTL  230 (255)
T ss_pred             -------------------------------HHHHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHH
Confidence                                           33599999999999999999876         56799999999999999


Q ss_pred             hCCCchHHHHHHhhHhCCCCCCCC
Q 015014          387 SSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       387 ~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .+.++|++|||++|+  ++++|+|
T Consensus       231 ~~~~~~~~e~i~af~--~kr~p~~  252 (255)
T PRK09674        231 LAATEDRHEGISAFL--EKRTPDF  252 (255)
T ss_pred             HhcCHHHHHHHHHHh--ccCCCCC
Confidence            999999999999999  5677775

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=3.2e-53  Score=410.49  Aligned_cols=254  Identities=21%  Similarity=0.323  Sum_probs=219.9

Q ss_pred             ecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC--CC----Cc
Q 015014           73 HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR--NT----PL  146 (414)
Q Consensus        73 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~--~~----~~  146 (414)
                      .+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++........  +.    ..
T Consensus        14 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~   92 (275)
T PLN02664         14 PNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAG-DHFCSGIDLKTLNSISEQSSSGDRGRSGER   92 (275)
T ss_pred             CCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CceeeCcChHHhhhcccccccccchhhHHH
Confidence            3789999999999999999999999999999999999999999999997 89999999998754211000  00    01


Q ss_pred             hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHH
Q 015014          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~  226 (414)
                      ...+......++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.+ +
T Consensus        93 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~  171 (275)
T PLN02664         93 LRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYG-N  171 (275)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHH-H
Confidence            122233334567789999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCC-CCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhh
Q 015014          227 GAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (414)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~  305 (414)
                      +++|++||+.++ |+||+++||||++||+ +++.+.+.+++                                       
T Consensus       172 A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~~l~~~~~~~a---------------------------------------  211 (275)
T PLN02664        172 AMELALTGRRFS-GSEAKELGLVSRVFGSKEDLDEGVRLIA---------------------------------------  211 (275)
T ss_pred             HHHHHHhCCCCC-HHHHHHcCCCceeeCChhHHHHHHHHHH---------------------------------------
Confidence            999999999999 9999999999999995 66654433333                                       


Q ss_pred             cCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHH
Q 015014          306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL  385 (414)
Q Consensus       306 F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~  385 (414)
                                                       ++|++.||.+++.+|++++...         ..++.++++.|...+.
T Consensus       212 ---------------------------------~~ia~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~  249 (275)
T PLN02664        212 ---------------------------------EGIAAKSPLAVTGTKAVLLRSR---------ELSVEQGLDYVATWNS  249 (275)
T ss_pred             ---------------------------------HHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHH
Confidence                                             3599999999999999999876         5679999999999999


Q ss_pred             HhCCCchHHHHHHhhHhCCCCCCCCCc
Q 015014          386 RSSLRSDFAEGVRAVLVDKDQVLSQLK  412 (414)
Q Consensus       386 ~~~~~~D~~eGv~afl~dk~~~P~~~~  412 (414)
                      ..+.++|++||+++|+  ++|+|.|-+
T Consensus       250 ~~~~~~d~~eg~~af~--ekr~p~~~~  274 (275)
T PLN02664        250 AMLVSDDLNEAVSAQI--QKRKPVFAK  274 (275)
T ss_pred             HhccChhHHHHHHHHh--ccCCCCCCC
Confidence            9999999999999999  677888754

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.2e-53  Score=405.28  Aligned_cols=251  Identities=22%  Similarity=0.286  Sum_probs=221.3

Q ss_pred             ccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCC
Q 015014           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (414)
Q Consensus        66 ~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (414)
                      +.|.++. +++|++|+||||++.|+||.+|+.+|.++++.++  +++|+|||||.| ++||+|+|++++...   +  ..
T Consensus         2 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g-~~F~aG~Dl~~~~~~---~--~~   72 (255)
T PRK08150          2 SLVSYEL-DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEG-DHFCAGLDLSELRER---D--AG   72 (255)
T ss_pred             ceEEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCC-CceecCcCHHHHhhc---c--ch
Confidence            3467776 7899999999999999999999999999999987  789999999997 799999999987541   1  11


Q ss_pred             chHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHH
Q 015014          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (414)
Q Consensus       146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~  225 (414)
                      ....+....+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~-  151 (255)
T PRK08150         73 EGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVA-  151 (255)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHH-
Confidence            1122334445677889999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhh
Q 015014          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (414)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~  305 (414)
                      ++++|++||+.++ |+||+++||||++||++++.+.+.++++                                      
T Consensus       152 ~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~--------------------------------------  192 (255)
T PRK08150        152 RMTDMMLTGRVYD-AQEGERLGLAQYLVPAGEALDKAMELAR--------------------------------------  192 (255)
T ss_pred             HHHHHHHcCCcCC-HHHHHHcCCccEeeCchHHHHHHHHHHH--------------------------------------
Confidence            9999999999999 9999999999999999887665444433                                      


Q ss_pred             cCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHH
Q 015014          306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL  385 (414)
Q Consensus       306 F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~  385 (414)
                                                        +|+++||.+++.+|++++...         ..++++.++.|.+.+.
T Consensus       193 ----------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~  229 (255)
T PRK08150        193 ----------------------------------RIAQNAPLTNFAVLNALPRIA---------DMSADDGLFVESLMAA  229 (255)
T ss_pred             ----------------------------------HHHhCCHHHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHH
Confidence                                              499999999999999999875         5679999999999888


Q ss_pred             HhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          386 RSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       386 ~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ..+.++|++||+++|+  ++++|+|
T Consensus       230 ~~~~s~d~~eg~~af~--~kr~p~~  252 (255)
T PRK08150        230 VAQSAPEAKERLRAFL--EKKAAKV  252 (255)
T ss_pred             HHhcCHHHHHHHHHHh--ccCCCCC
Confidence            8999999999999999  6777877

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.1e-53  Score=405.60  Aligned_cols=249  Identities=21%  Similarity=0.288  Sum_probs=221.1

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      ..+++.++..+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++...     .
T Consensus         4 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~-----~   78 (256)
T PRK06143          4 LNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATL-----D   78 (256)
T ss_pred             ccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhc-----C
Confidence            34557777667899999999999999999999999999999999999999999999986799999999987541     1


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      ......+......++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ |++|++++|++++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~  157 (256)
T PRK06143         79 QASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGW  157 (256)
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCH
Confidence            1122334455566788899999999999999999999999999999999999999999999998 888889999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|++||+.++ |+||+++||||++||++++.+.+.++++                                    
T Consensus       158 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~------------------------------------  199 (256)
T PRK06143        158 A-RTRWLLLTGETID-AAQALAWGLVDRVVPLAELDAAVERLAA------------------------------------  199 (256)
T ss_pred             H-HHHHHHHcCCcCC-HHHHHHCCCcCeecCHHHHHHHHHHHHH------------------------------------
Confidence            8 9999999999999 9999999999999998887655444433                                    


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                          +|++.||.+++.+|+.++...         ..++++.++.|...
T Consensus       200 ------------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~  234 (256)
T PRK06143        200 ------------------------------------SLAGCGPQALRQQKRLLREWE---------DMPLDVAIDDSVAE  234 (256)
T ss_pred             ------------------------------------HHHcCCHHHHHHHHHHHHHHc---------cCCHHHHHHHHHHH
Confidence                                                499999999999999999865         56799999999999


Q ss_pred             HHHhCCCchHHHHHHhhH
Q 015014          384 ALRSSLRSDFAEGVRAVL  401 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl  401 (414)
                      +...+.++|++||+++|+
T Consensus       235 ~~~~~~~~d~~e~~~af~  252 (256)
T PRK06143        235 FGAAFLTGEPQRHMAAFL  252 (256)
T ss_pred             HHHHhcChHHHHHHHHHH
Confidence            999999999999999999

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.5e-53  Score=406.25  Aligned_cols=257  Identities=23%  Similarity=0.331  Sum_probs=223.0

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      .++.+.++. +++|++||||||+++|++|.+|+.+|.++++.++ |+++++|||+|.| ++||+|+|++++....  ...
T Consensus         2 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~--~~~   76 (262)
T PRK08140          2 MYETILLAI-EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAG-RGFCAGQDLADRDVTP--GGA   76 (262)
T ss_pred             CCceEEEEe-ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCC-CCcccCcChHHHhccc--ccc
Confidence            456688886 7899999999999999999999999999999999 9999999999998 8999999999874311  000


Q ss_pred             CCchHHHHHH-HHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          144 TPLVPKVFTA-EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       144 ~~~~~~~~~~-~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                      .......+.. ...++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG  156 (262)
T PRK08140         77 MPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVG  156 (262)
T ss_pred             chhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhC
Confidence            1111111222 234677899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||+.++ |+||+++|||++|||++++.+.+.+++                                    
T Consensus       157 ~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a------------------------------------  198 (262)
T PRK08140        157 MA-RALGLALLGEKLS-AEQAEQWGLIWRVVDDAALADEAQQLA------------------------------------  198 (262)
T ss_pred             HH-HHHHHHHcCCCcC-HHHHHHcCCccEeeChHHHHHHHHHHH------------------------------------
Confidence            98 9999999999999 999999999999999887765444433                                    


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                                                          ++|++.||.+++.+|+.++...         ..++.++++.|..
T Consensus       199 ------------------------------------~~ia~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~  233 (262)
T PRK08140        199 ------------------------------------AHLATQPTRGLALIKQAMNASA---------TNTLDAQLDLERD  233 (262)
T ss_pred             ------------------------------------HHHHhCCHHHHHHHHHHHHHhh---------hCCHHHHHHHHHH
Confidence                                                3489999999999999999876         5689999999999


Q ss_pred             HHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          383 VALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       383 ~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .+...+.++|++||+++|+  ++++|.|
T Consensus       234 ~~~~~~~~~~~~e~~~af~--~kr~p~~  259 (262)
T PRK08140        234 LQREAGRSADYAEGVSAFL--EKRAPRF  259 (262)
T ss_pred             HHHHHhcChhHHHHHHHHh--cCCCCCC
Confidence            9999999999999999999  6777775

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.5e-53  Score=405.93  Aligned_cols=256  Identities=21%  Similarity=0.279  Sum_probs=221.2

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      ++.+.++. +++|++||||||+++|++|.+|+++|.++++.++.|+++++|||+|.| ++||+|+|++++....   ...
T Consensus         4 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---~~~   78 (263)
T PRK07799          4 GPHALVEQ-RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAG-GAFCAGMDLKAATKKP---PGD   78 (263)
T ss_pred             CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccccCHHHHhhcc---ccc
Confidence            46688886 789999999999999999999999999999999999999999999997 8999999999876421   001


Q ss_pred             CchHH-HHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          145 PLVPK-VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       145 ~~~~~-~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      ..... +.......+..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~  158 (263)
T PRK07799         79 SFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPY  158 (263)
T ss_pred             hhhhhhhhhhHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCH
Confidence            10000 11111122335788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      + ++++|++||+.++ |+||+++||||+|||++++.+.+.+++                                     
T Consensus       159 ~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a-------------------------------------  199 (263)
T PRK07799        159 T-VACDLLLTGRHIT-AAEAKEIGLIGHVVPDGQALDKALELA-------------------------------------  199 (263)
T ss_pred             H-HHHHHHHcCCCCC-HHHHHHcCCccEecCcchHHHHHHHHH-------------------------------------
Confidence            8 9999999999999 999999999999999988765443332                                     


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                         ++|++.||.+++.+|+.++...         ..++.++++.|.+.
T Consensus       200 -----------------------------------~~~~~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~  235 (263)
T PRK07799        200 -----------------------------------ELINANGPLAVQAILRTIRETE---------GMHENEAFKIDTKI  235 (263)
T ss_pred             -----------------------------------HHHHhcChHHHHHHHHHHHHhh---------cCCHHHHHHHHHHH
Confidence                                               3589999999999999999876         56799999999999


Q ss_pred             HHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          384 ALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +..++.++|++|||++|+  ++++|+|
T Consensus       236 ~~~~~~~~~~~egi~af~--~~r~p~~  260 (263)
T PRK07799        236 GIPVFLSEDAKEGPRAFA--EKRAPNF  260 (263)
T ss_pred             HHHHhcCccHHHHHHHHH--ccCCCCC
Confidence            999999999999999999  6778876

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-52  Score=403.88  Aligned_cols=253  Identities=22%  Similarity=0.317  Sum_probs=223.8

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      .+.+.++..+++|++|+||||+++|++|.+|+.+|.++++.+++|+++|+|||+|.| ++||+|+|++++...   .   
T Consensus         6 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~---~---   78 (261)
T PRK08138          6 TDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGE-KVFAAGADIKEFATA---G---   78 (261)
T ss_pred             CCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCeeCCcCHHHHhcc---c---
Confidence            456777765789999999999999999999999999999999999999999999987 899999999987531   1   


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                       ....+......++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..
T Consensus        79 -~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  157 (261)
T PRK08138         79 -AIEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKF  157 (261)
T ss_pred             -hhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHH
Confidence             1122333345677789999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       ++++|++||+.++ |+||+++||||++||++++.+.+.++++                                     
T Consensus       158 -~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~-------------------------------------  198 (261)
T PRK08138        158 -KAMRMALTGCMVP-APEALAIGLVSEVVEDEQTLPRALELAR-------------------------------------  198 (261)
T ss_pred             -HHHHHHHcCCCCC-HHHHHHCCCCcEecCchHHHHHHHHHHH-------------------------------------
Confidence             9999999999999 9999999999999998887654443332                                     


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                                                         +|++.||.+++.+|++++...         ..++++++..|.+.+
T Consensus       199 -----------------------------------~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~  234 (261)
T PRK08138        199 -----------------------------------EIARMPPLALAQIKEVVLAGA---------DAPLDAALALERKAF  234 (261)
T ss_pred             -----------------------------------HHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Confidence                                               488899999999999999876         567999999999999


Q ss_pred             HHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          385 LRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       385 ~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ..++.++|++||+++|+  ++++|+|
T Consensus       235 ~~~~~~~~~~~~i~af~--~kr~~~~  258 (261)
T PRK08138        235 QLLFDSEDQKEGMDAFL--EKRKPAY  258 (261)
T ss_pred             HHHhcCHHHHHHHHHHh--cCCCCCC
Confidence            99999999999999999  6677775

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=9.2e-53  Score=405.35  Aligned_cols=256  Identities=23%  Similarity=0.333  Sum_probs=225.5

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      +..+++.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++....    
T Consensus         8 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~----   81 (266)
T PRK08139          8 TEAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAG-KAFCAGHDLKEMRAAR----   81 (266)
T ss_pred             ccCCceEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCC-CcceeccCHHHHhccc----
Confidence            4567788886 799999999999999999999999999999999999999999999998 8999999999875311    


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                      .......++....+++.++.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++| +++|+|++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG  160 (266)
T PRK08139         82 GLAYFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVP  160 (266)
T ss_pred             chhHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhC
Confidence            1122233444556678889999999999999999999999999999999999999999999999999765 568999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||+.++ |+||+++||||+|+|++++.+.+.+++                                    
T Consensus       161 ~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a------------------------------------  202 (266)
T PRK08139        161 RK-QAMEMLLTGEFID-AATAREWGLVNRVVPADALDAAVARLA------------------------------------  202 (266)
T ss_pred             HH-HHHHHHHcCCccC-HHHHHHcCCccEeeChhHHHHHHHHHH------------------------------------
Confidence            98 9999999999999 999999999999999888765544443                                    


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                                                          ++|++.||.+++.+|++++...         ..+++++++.|..
T Consensus       203 ------------------------------------~~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~  237 (266)
T PRK08139        203 ------------------------------------AVIAAKSPAAVRIGKEAFYRQA---------EMPLADAYAYAGD  237 (266)
T ss_pred             ------------------------------------HHHHhCCHHHHHHHHHHHHHhc---------cCCHHHHHHHHHH
Confidence                                                3499999999999999999876         5679999999999


Q ss_pred             HHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          383 VALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       383 ~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .+...+.++|++||+++|+  ++++|+|
T Consensus       238 ~~~~~~~~~d~~eg~~af~--~kr~p~~  263 (266)
T PRK08139        238 VMAENMMAEDAEEGIDAFL--EKRPPEW  263 (266)
T ss_pred             HHHHHhcCchHHHHHHHHh--cCCCCCC
Confidence            9999999999999999999  6677775

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=7.6e-53  Score=403.92  Aligned_cols=252  Identities=24%  Similarity=0.335  Sum_probs=219.4

Q ss_pred             EEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchH
Q 015014           69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP  148 (414)
Q Consensus        69 ~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~  148 (414)
                      .++. +++|++||||||++.|+||.+|+.+|.++++.+++|+ +++|||+|.| ++||+|+|++++....  ....+...
T Consensus         2 ~~e~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g-~~F~aG~Dl~~~~~~~--~~~~~~~~   76 (256)
T TIGR02280         2 LSAL-EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAG-RGFCAGQDLSERNPTP--GGAPDLGR   76 (256)
T ss_pred             eEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCC-CCcccCcCHHHHhhcc--ccchhHHH
Confidence            4565 7899999999999999999999999999999999999 9999999997 8999999999875311  00111111


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHH
Q 015014          149 KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGA  228 (414)
Q Consensus       149 ~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~  228 (414)
                      .+......++..+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. +++
T Consensus        77 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~-~a~  155 (256)
T TIGR02280        77 TIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRA-RAM  155 (256)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHH-HHH
Confidence            1111123466789999999999999999999999999999999999999999999999999999999999999998 999


Q ss_pred             HHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcCC
Q 015014          229 YLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSS  308 (414)
Q Consensus       229 ~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~  308 (414)
                      +|++||++++ |+||+++|||++++|++++.+.+.++++                                         
T Consensus       156 ~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~-----------------------------------------  193 (256)
T TIGR02280       156 GLAMLGEKLD-ARTAASWGLIWQVVDDAALMDEAQALAV-----------------------------------------  193 (256)
T ss_pred             HHHHcCCCCC-HHHHHHcCCcceeeChHHHHHHHHHHHH-----------------------------------------
Confidence            9999999999 9999999999999998887655444433                                         


Q ss_pred             cccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHhC
Q 015014          309 EKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSS  388 (414)
Q Consensus       309 ~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~  388 (414)
                                                     +|++.||.+++.+|+.++...         ...+.+.++.|.+.+..++
T Consensus       194 -------------------------------~la~~~~~~~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~  233 (256)
T TIGR02280       194 -------------------------------HLAAQPTRGLALTKRAIQAAA---------TNSLDTQLDLERDLQRELG  233 (256)
T ss_pred             -------------------------------HHHhCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHHHHHHHh
Confidence                                           489999999999999999876         5679999999999999999


Q ss_pred             CCchHHHHHHhhHhCCCCCCCC
Q 015014          389 LRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       389 ~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .++|++||+++|+  ++++|+|
T Consensus       234 ~~~d~~eg~~af~--~kr~p~~  253 (256)
T TIGR02280       234 RSADYAEGVTAFL--DKRNPQF  253 (256)
T ss_pred             cChhHHHHHHHHH--cCCCCCC
Confidence            9999999999999  6778875

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.1e-53  Score=403.65  Aligned_cols=252  Identities=25%  Similarity=0.328  Sum_probs=222.8

Q ss_pred             cEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCc
Q 015014           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (414)
Q Consensus        67 ~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (414)
                      ++.++. +++|++||||||++ |++|.+|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++....    ....
T Consensus         3 ~i~~~~-~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~----~~~~   75 (257)
T PRK07658          3 FLSVRV-EDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGADIKEFTSVT----EAEQ   75 (257)
T ss_pred             eEEEEe-eCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhccC----chhh
Confidence            467776 78999999999986 999999999999999999999999999999997 8999999999875321    1111


Q ss_pred             hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHH
Q 015014          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~  226 (414)
                      ...+......++.+|..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        76 ~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~  154 (257)
T PRK07658         76 ATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKA-K  154 (257)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHH-H
Confidence            222334445677889999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhc
Q 015014          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF  306 (414)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F  306 (414)
                      +++|++||++++ |+||+++||||++||++++.+.+.+++                                        
T Consensus       155 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a----------------------------------------  193 (257)
T PRK07658        155 ALEMMLTSEPIT-GAEALKWGLVNGVFPEETLLDDAKKLA----------------------------------------  193 (257)
T ss_pred             HHHHHHcCCCcC-HHHHHHcCCcCeecChhHHHHHHHHHH----------------------------------------
Confidence            999999999999 999999999999999888765443333                                        


Q ss_pred             CCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHH
Q 015014          307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALR  386 (414)
Q Consensus       307 ~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~  386 (414)
                                                      ++|++.||.+++.+|++++...         ..++++.++.|...+..
T Consensus       194 --------------------------------~~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~  232 (257)
T PRK07658        194 --------------------------------KKIAGKSPATTRAVLELLQTTK---------SSSYYEGVKREAKIFGE  232 (257)
T ss_pred             --------------------------------HHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHH
Confidence                                            3489999999999999999876         56799999999999999


Q ss_pred             hCCCchHHHHHHhhHhCCCCCCCC
Q 015014          387 SSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       387 ~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ++.++|++|||++|+  ++++|+|
T Consensus       233 ~~~~~~~~egi~af~--~kr~p~~  254 (257)
T PRK07658        233 VFTSEDAKEGVQAFL--EKRKPSF  254 (257)
T ss_pred             HhCCHHHHHHHHHHH--cCCCCCC
Confidence            999999999999999  6677876

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=1.1e-52  Score=406.53  Aligned_cols=259  Identities=25%  Similarity=0.322  Sum_probs=221.5

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      .|++|.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....... .
T Consensus         6 ~~~~i~~~~-~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~-~   82 (275)
T PRK09120          6 RWDTVKVEV-EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLKEYFRETDAQ-P   82 (275)
T ss_pred             ccccEEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CceecCcCHHHHhhccccc-h
Confidence            367788886 789999999999999999999999999999999999999999999997 8999999999875421100 0


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      ...........+.++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~  162 (275)
T PRK09120         83 EILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGH  162 (275)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCH
Confidence            10112223334567778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|++||+.++ |+||+++|||++|||++++++.+.++++                                    
T Consensus       163 ~-~a~~llltg~~~~-A~eA~~~Glv~~vv~~~~l~~~a~~~a~------------------------------------  204 (275)
T PRK09120        163 R-DALYYIMTGETFT-GRKAAEMGLVNESVPLAQLRARTRELAA------------------------------------  204 (275)
T ss_pred             H-HHHHHHhcCCccC-HHHHHHcCCcceecCHHHHHHHHHHHHH------------------------------------
Confidence            8 9999999999999 9999999999999999888665544433                                    


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                          +|++.||.+++.+|+.++...         ..++.+.++.|...
T Consensus       205 ------------------------------------~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~  239 (275)
T PRK09120        205 ------------------------------------KLLEKNPVVLRAAKDGFKRVR---------ELTWDQAEDYLYAK  239 (275)
T ss_pred             ------------------------------------HHHhCCHHHHHHHHHHHHHHH---------hCCHHHHHHHHHHH
Confidence                                                499999999999999999876         56789998887654


Q ss_pred             --HHHhCCCc-hHHHHHHhhHhCCCCCC
Q 015014          384 --ALRSSLRS-DFAEGVRAVLVDKDQVL  408 (414)
Q Consensus       384 --~~~~~~~~-D~~eGv~afl~dk~~~P  408 (414)
                        ....+.++ |++||+++|+.++..+|
T Consensus       240 ~~~~~~~~~~~d~~eg~~afl~kr~~~~  267 (275)
T PRK09120        240 LEQANSLDPEGGREEGLKQFLDDKSYKP  267 (275)
T ss_pred             HHHHHhhCCHHHHHHHHHHHHhcccCCc
Confidence              44467888 99999999996555455

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-52  Score=405.00  Aligned_cols=257  Identities=21%  Similarity=0.278  Sum_probs=222.5

Q ss_pred             cEEEEEecCcEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC-CC
Q 015014           67 FVKGNVHPNGVAVITLDRPKALNAMNL-DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR-NT  144 (414)
Q Consensus        67 ~v~~~~~~~~V~~Itlnrp~~~Nal~~-~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~-~~  144 (414)
                      .+.++. +++|++||||||+++|++|. +|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++........ ..
T Consensus         4 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~   81 (266)
T PRK09245          4 FLLVER-DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAG-TAFSSGGNVKDMRARVGAFGGSP   81 (266)
T ss_pred             ceEEEE-ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCHHHHhhccccccccc
Confidence            477776 78999999999999999995 9999999999999999999999999997 89999999998754211000 01


Q ss_pred             Cch-HHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          145 PLV-PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       145 ~~~-~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      ... ..+......++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~  161 (266)
T PRK09245         82 ADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGM  161 (266)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhH
Confidence            111 1122233456778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|++||++++ |+||+++||||+|||++++++.+.+++                                     
T Consensus       162 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a-------------------------------------  202 (266)
T PRK09245        162 A-RAAEMAFTGDAID-AATALEWGLVSRVVPADQLLPAARALA-------------------------------------  202 (266)
T ss_pred             H-HHHHHHHcCCCcC-HHHHHHcCCcceecCHHHHHHHHHHHH-------------------------------------
Confidence            8 9999999999999 999999999999999888765444433                                     


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                         ++|++.||.+++.+|++++...         ..++++.++.|...
T Consensus       203 -----------------------------------~~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~  238 (266)
T PRK09245        203 -----------------------------------ERIAANPPHALRLTKRLLREGQ---------HASLDTLLELSAAY  238 (266)
T ss_pred             -----------------------------------HHHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHH
Confidence                                               3499999999999999999875         56799999999999


Q ss_pred             HHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          384 ALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ....+.++|++||+++|+  ++++|.|
T Consensus       239 ~~~~~~~~d~~eg~~af~--~kr~p~~  263 (266)
T PRK09245        239 QALAHHTADHREAVDAFL--EKRPPVF  263 (266)
T ss_pred             HHHHhcCHhHHHHHHHHH--cCCCCCC
Confidence            999999999999999999  6777876

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-52  Score=401.20  Aligned_cols=248  Identities=19%  Similarity=0.246  Sum_probs=216.1

Q ss_pred             cEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCc
Q 015014           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (414)
Q Consensus        67 ~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (414)
                      .+.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++...   . ....
T Consensus         4 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~---~-~~~~   77 (254)
T PRK08252          4 EVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAG-GTFCAGMDLKAFARG---E-RPSI   77 (254)
T ss_pred             eEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CceEcCcCHHHHhcc---c-chhh
Confidence            467776 789999999999999999999999999999999999999999999997 899999999987541   1 1110


Q ss_pred             hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHH
Q 015014          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~  226 (414)
                         .......+.  ...+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        78 ---~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~-~  151 (254)
T PRK08252         78 ---PGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYH-I  151 (254)
T ss_pred             ---hHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHH-H
Confidence               111111121  2469999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhc
Q 015014          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF  306 (414)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F  306 (414)
                      +++|++||++++ |+||+++||||+|||++++.+.+.++                                         
T Consensus       152 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~-----------------------------------------  189 (254)
T PRK08252        152 AMELALTGDMLT-AERAHELGLVNRLTEPGQALDAALEL-----------------------------------------  189 (254)
T ss_pred             HHHHHHcCCccC-HHHHHHcCCcceecCcchHHHHHHHH-----------------------------------------
Confidence            999999999999 99999999999999988875544333                                         


Q ss_pred             CCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHH
Q 015014          307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALR  386 (414)
Q Consensus       307 ~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~  386 (414)
                                                     +++|++.||.+++.+|++++...         ..++.++++.|...+..
T Consensus       190 -------------------------------a~~l~~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~~  229 (254)
T PRK08252        190 -------------------------------AERIAANGPLAVAASKRIVVESG---------DWSEDEMFARQRELIAP  229 (254)
T ss_pred             -------------------------------HHHHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHH
Confidence                                           33589999999999999999875         56799999999999999


Q ss_pred             hCCCchHHHHHHhhHhCCCCCCCC
Q 015014          387 SSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       387 ~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .+.++|++||+++|+  ++++|+|
T Consensus       230 ~~~~~~~~eg~~af~--~kr~p~~  251 (254)
T PRK08252        230 VFTSADAKEGATAFA--EKRAPVW  251 (254)
T ss_pred             HhcCchHHHHHHHHh--cCCCCCC
Confidence            999999999999999  5677776

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.5e-53  Score=403.04  Aligned_cols=250  Identities=20%  Similarity=0.210  Sum_probs=217.0

Q ss_pred             EEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchH
Q 015014           69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP  148 (414)
Q Consensus        69 ~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~  148 (414)
                      .++. +++|++||||||++.|+||.+|+.+|.++++.+++|+++|+|||+|.| ++||+|+|++++..... .   . ..
T Consensus         2 ~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~-~---~-~~   74 (255)
T PRK06563          2 SRER-RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHG-EHFTAGLDLADVAPKLA-A---G-GF   74 (255)
T ss_pred             eEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CCCcCCcCHHHHhhccc-c---c-hh
Confidence            4555 789999999999999999999999999999999999999999999997 89999999998754210 0   0 11


Q ss_pred             HHHHHHHH-HHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHH
Q 015014          149 KVFTAEYS-LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (414)
Q Consensus       149 ~~~~~~~~-l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a  227 (414)
                      .+.....+ +...+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.+ ++
T Consensus        75 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~a  153 (255)
T PRK06563         75 PFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWG-NA  153 (255)
T ss_pred             hhhhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHH-HH
Confidence            12111222 22357899999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcC
Q 015014          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS  307 (414)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~  307 (414)
                      ++|++||+.++ |+||+++||||+++|++++.+.+.+++                                         
T Consensus       154 ~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a-----------------------------------------  191 (255)
T PRK06563        154 MRYLLTGDEFD-AQEALRLGLVQEVVPPGEQLERAIELA-----------------------------------------  191 (255)
T ss_pred             HHHHHcCCCcC-HHHHHHcCCCcEeeCHHHHHHHHHHHH-----------------------------------------
Confidence            99999999999 999999999999999887765444433                                         


Q ss_pred             CcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHh
Q 015014          308 SEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRS  387 (414)
Q Consensus       308 ~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~  387 (414)
                                                     ++|++.||.+++.+|++++...         ..++.++++.|...+...
T Consensus       192 -------------------------------~~la~~~~~a~~~~K~~~~~~~---------~~~~~~~~~~e~~~~~~~  231 (255)
T PRK06563        192 -------------------------------ERIARAAPLGVQATLASARAAV---------REGEAAAAAQLPPELRPL  231 (255)
T ss_pred             -------------------------------HHHHhcCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHHH
Confidence                                           3489999999999999999865         568999999999999999


Q ss_pred             CCCchHHHHHHhhHhCCCCCCCC
Q 015014          388 SLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       388 ~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +.++|++||+++|+  ++|+|.|
T Consensus       232 ~~~~d~~eg~~af~--~kr~p~~  252 (255)
T PRK06563        232 FTSEDAKEGVQAFL--ERRPARF  252 (255)
T ss_pred             hcCchHHHHHHHHh--cCCCCCC
Confidence            99999999999999  6777775

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-52  Score=403.02  Aligned_cols=257  Identities=21%  Similarity=0.297  Sum_probs=220.5

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      ++.+.++..+++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++......  ..
T Consensus         3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~--~~   79 (262)
T PRK07468          3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMRAQMTA--DR   79 (262)
T ss_pred             cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CcccCCcCHHHHHhhccc--ch
Confidence            556788764468999999999999999999999999999999999999999999997 899999999987542110  11


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      ............++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++.+ +|..
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~  158 (262)
T PRK07468         80 ATRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEA  158 (262)
T ss_pred             hhHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHH
Confidence            111112333455778899999999999999999999999999999999999999999999999999999986654 8998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       ++++|++||++++ |+||+++|||++++|++++.+.+.+++                                      
T Consensus       159 -~a~~lll~g~~~~-a~eA~~~Glv~~v~~~~~l~~~~~~~a--------------------------------------  198 (262)
T PRK07468        159 -NARRVFMSARLFD-AEEAVRLGLLSRVVPAERLDAAVEAEV--------------------------------------  198 (262)
T ss_pred             -HHHHHHHhCCccC-HHHHHHcCCcceecCHHHHHHHHHHHH--------------------------------------
Confidence             9999999999999 999999999999999877765444433                                      


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                                                        ++|++.||.+++.+|++++...         ...+++.++.|...+
T Consensus       199 ----------------------------------~~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~  235 (262)
T PRK07468        199 ----------------------------------TPYLSCAPGAVAAAKALVRALG---------APIDEAVIDATIEAL  235 (262)
T ss_pred             ----------------------------------HHHHhcCHHHHHHHHHHHHhhh---------ccChHHHHHHHHHHH
Confidence                                              3489999999999999998765         456789999999999


Q ss_pred             HHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          385 LRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       385 ~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ...+.++|++||+++|+  ++++|+|
T Consensus       236 ~~~~~s~d~~e~~~af~--~kr~~~~  259 (262)
T PRK07468        236 ADTWETEEAREGIAAFF--DKRAPAW  259 (262)
T ss_pred             HHHhcCHHHHHHHHHHH--cCCCCCC
Confidence            99999999999999999  6777876

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.4e-52  Score=403.94  Aligned_cols=258  Identities=22%  Similarity=0.275  Sum_probs=218.9

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      .|++|.++.++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..... ...
T Consensus         3 ~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~-~~~   80 (265)
T PRK05674          3 DFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRG-RHFSAGADLAWMQQSAD-LDY   80 (265)
T ss_pred             CcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhccc-ccc
Confidence            4778888864478999999999999999999999999999999999999999999998 89999999998753210 000


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      ... .........++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++ +++++|.
T Consensus        81 ~~~-~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~-l~~~vG~  158 (265)
T PRK05674         81 NTN-LDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPF-VVKAIGE  158 (265)
T ss_pred             hhh-hHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHH-HHHHhCH
Confidence            011 11223345677789999999999999999999999999999999999999999999999999887664 8899999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|+|||+.|+ |+||+++|||++|||++++.+.+.++++                                    
T Consensus       159 ~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~------------------------------------  200 (265)
T PRK05674        159 R-AARRYALTAERFD-GRRARELGLLAESYPAAELEAQVEAWIA------------------------------------  200 (265)
T ss_pred             H-HHHHHHHhCcccC-HHHHHHCCCcceecCHHHHHHHHHHHHH------------------------------------
Confidence            8 9999999999999 9999999999999998877654444433                                    


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHH-HHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKY-EYR  382 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~-e~~  382 (414)
                                                          +|+++||.+++.+|+.++...         ..++.+.++. +..
T Consensus       201 ------------------------------------~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~~~~~  235 (265)
T PRK05674        201 ------------------------------------NLLLNSPQALRASKDLLREVG---------DGELSPALRRYCEN  235 (265)
T ss_pred             ------------------------------------HHHhcCHHHHHHHHHHHHHhh---------ccChhHHHHHHHHH
Confidence                                                489999999999999999876         5667788765 446


Q ss_pred             HHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          383 VALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       383 ~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .+...+.++|++||+++|+  ++++|+|
T Consensus       236 ~~~~~~~s~d~~e~~~af~--~kr~p~~  261 (265)
T PRK05674        236 AIARIRVSAEGQEGLRAFL--EKRTPAW  261 (265)
T ss_pred             HHHHHhcCHHHHHHHHHHH--ccCCCCC
Confidence            6777889999999999999  6677776

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-52  Score=402.67  Aligned_cols=258  Identities=21%  Similarity=0.279  Sum_probs=222.0

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      |.++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....... 
T Consensus         1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-   77 (262)
T PRK05995          1 MMYETLEIEQ-RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAG-KAFCAGADLNWMKKMAGYS-   77 (262)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CccccCcCHHHHhhhcccC-
Confidence            3466788886 789999999999999999999999999999999999999999999998 8999999999875421111 


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                       .............++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++ |++++|
T Consensus        78 -~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg  155 (262)
T PRK05995         78 -DDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMG  155 (262)
T ss_pred             -chhhhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhC
Confidence             111111223445677889999999999999999999999999999999999999999999999999888765 889999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||++++ |+||+++||||+|||++++.+.+.++++                                   
T Consensus       156 ~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~-----------------------------------  198 (262)
T PRK05995        156 ER-AARRYFLTAERFD-AAEALRLGLVHEVVPAEALDAKVDELLA-----------------------------------  198 (262)
T ss_pred             HH-HHHHHHHcCCccC-HHHHHHcCCCCeecCHHHHHHHHHHHHH-----------------------------------
Confidence            98 9999999999999 9999999999999998877655444433                                   


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHH-HHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGV-MKYEY  381 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~-l~~e~  381 (414)
                                                           +|++.||.+++.+|+.++...         ..++.+. ++.|.
T Consensus       199 -------------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~~e~  232 (262)
T PRK05995        199 -------------------------------------ALVANSPQAVRAGKRLVRDVA---------GRPIDAALIADTA  232 (262)
T ss_pred             -------------------------------------HHHhCCHHHHHHHHHHHHhhh---------cCChhhHHHHHHH
Confidence                                                 489999999999999999765         4578888 88888


Q ss_pred             HHHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          382 RVALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       382 ~~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ..+...+.++|++||+++|+  ++++|+|
T Consensus       233 ~~~~~~~~~~d~~e~~~af~--~kr~p~~  259 (262)
T PRK05995        233 SRIALIRATEEAREGVAAFL--EKRKPAW  259 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHh--cCCCCCC
Confidence            88888999999999999999  6777775

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=1.7e-52  Score=401.43  Aligned_cols=255  Identities=18%  Similarity=0.181  Sum_probs=214.5

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      |+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++...   . . 
T Consensus         1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~---~-~-   74 (256)
T TIGR03210         1 YEDILYEK-RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG---Y-D-   74 (256)
T ss_pred             CCceEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc---c-c-
Confidence            34577876 7899999999999999999999999999999999999999999999986799999999987421   0 1 


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      . ...+......++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..
T Consensus        75 ~-~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~  153 (256)
T TIGR03210        75 G-RGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEK  153 (256)
T ss_pred             c-hhHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHH
Confidence            1 111222334577789999999999999999999999999999999999999999999999998888899999999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       ++++|++||++++ |+||+++||||++||++++.+.+.++++                                     
T Consensus       154 -~A~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~-------------------------------------  194 (256)
T TIGR03210       154 -KAREIWYLCRRYT-AQEALAMGLVNAVVPHDQLDAEVQKWCD-------------------------------------  194 (256)
T ss_pred             -HHHHHHHhCCCcC-HHHHHHcCCceeeeCHHHHHHHHHHHHH-------------------------------------
Confidence             9999999999999 9999999999999998887665544433                                     


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                                                         +|++.||.+++.+|++++...+       ....+ +.  .|...+
T Consensus       195 -----------------------------------~ia~~~~~a~~~~K~~l~~~~~-------~~~~~-~~--~~~~~~  229 (256)
T TIGR03210       195 -----------------------------------EIVEKSPTAIAIAKRSFNMDTA-------HQRGI-AG--MGMYAL  229 (256)
T ss_pred             -----------------------------------HHHhCCHHHHHHHHHHHHHhhc-------ccchH-HH--HHHHHH
Confidence                                               4999999999999999997641       01111 12  244566


Q ss_pred             HHhCCCchHHHHHHhhHhCCCCCCCCCc
Q 015014          385 LRSSLRSDFAEGVRAVLVDKDQVLSQLK  412 (414)
Q Consensus       385 ~~~~~~~D~~eGv~afl~dk~~~P~~~~  412 (414)
                      ...+.++|++||+++|+  ++|+|+|-+
T Consensus       230 ~~~~~~~d~~e~~~af~--~kr~p~~~~  255 (256)
T TIGR03210       230 KLYYDTAESREGVKAFQ--EKRKPEFRK  255 (256)
T ss_pred             HHHccChhHHHHHHHHh--ccCCCCCCC
Confidence            77889999999999999  677888743

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=1.3e-52  Score=402.82  Aligned_cols=256  Identities=20%  Similarity=0.195  Sum_probs=217.0

Q ss_pred             cEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCc
Q 015014           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (414)
Q Consensus        67 ~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (414)
                      .+.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++....  ......
T Consensus         3 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~--~~~~~~   80 (259)
T TIGR01929         3 DIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYG--YIDDSG   80 (259)
T ss_pred             eEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhcc--ccchhh
Confidence            466664368999999999999999999999999999999999999999999999867999999999764210  000110


Q ss_pred             hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHH
Q 015014          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~  226 (414)
                      .  .......++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        81 ~--~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~-~  157 (259)
T TIGR01929        81 V--HRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQK-K  157 (259)
T ss_pred             H--HHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHH-H
Confidence            0  111233566788999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhc
Q 015014          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF  306 (414)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F  306 (414)
                      +++|++||++++ |+||+++|||++|||++++.+.+.+++                                        
T Consensus       158 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a----------------------------------------  196 (259)
T TIGR01929       158 AREIWFLCRQYD-AEQALDMGLVNTVVPLADLEKETVRWC----------------------------------------  196 (259)
T ss_pred             HHHHHHhCCccC-HHHHHHcCCcccccCHHHHHHHHHHHH----------------------------------------
Confidence            999999999999 999999999999999887765444433                                        


Q ss_pred             CCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHH
Q 015014          307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALR  386 (414)
Q Consensus       307 ~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~  386 (414)
                                                      ++|++.||.+++.+|++++...         . ...+..+.|.+.+..
T Consensus       197 --------------------------------~~la~~~~~a~~~~K~~l~~~~---------~-~~~~~~~~e~~~~~~  234 (259)
T TIGR01929       197 --------------------------------REILQKSPMAIRMLKAALNADC---------D-GQAGLQELAGNATML  234 (259)
T ss_pred             --------------------------------HHHHhCCHHHHHHHHHHHHhhh---------c-cchHHHHHHHHHHHH
Confidence                                            3599999999999999999764         2 234556667788888


Q ss_pred             hCCCchHHHHHHhhHhCCCCCCCCCc
Q 015014          387 SSLRSDFAEGVRAVLVDKDQVLSQLK  412 (414)
Q Consensus       387 ~~~~~D~~eGv~afl~dk~~~P~~~~  412 (414)
                      .+.++|++|||++|+  ++|+|+|-+
T Consensus       235 ~~~~~d~~egi~af~--~kr~p~~~~  258 (259)
T TIGR01929       235 FYMTEEGQEGRNAFL--EKRQPDFSK  258 (259)
T ss_pred             HhcCccHHHHHHHHh--ccCCCCCCC
Confidence            899999999999999  778888754

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-52  Score=405.32  Aligned_cols=256  Identities=21%  Similarity=0.290  Sum_probs=223.8

Q ss_pred             cEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCc
Q 015014           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (414)
Q Consensus        67 ~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (414)
                      .+.++. +++|++|+||||++.|+|+.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... ......
T Consensus        18 ~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~-~~~~~~   94 (277)
T PRK08258         18 HFLWEV-DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSGGDVHEIIGPLT-KMDMPE   94 (277)
T ss_pred             ceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCC-CCcccccCHHHHhcccc-ccChhH
Confidence            677876 799999999999999999999999999999999999999999999997 89999999998743211 111111


Q ss_pred             hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCC-ChhHHHHHhhCCCcHH
Q 015014          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP-DVGFSYIAAKGPGGGS  225 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P-~~g~~~~L~r~~G~~~  225 (414)
                      ...+......++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++| ++|++++|++++|.. 
T Consensus        95 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~-  173 (277)
T PRK08258         95 LLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQG-  173 (277)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHH-
Confidence            222333345678889999999999999999999999999999999999999999999999995 789999999999998 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhh
Q 015014          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (414)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~  305 (414)
                      ++++|++||++++ |+||+++||||+++|++++.+.+.+++                                       
T Consensus       174 ~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a---------------------------------------  213 (277)
T PRK08258        174 RASELLYTGRSMS-AEEGERWGFFNRLVEPEELLAEAQALA---------------------------------------  213 (277)
T ss_pred             HHHHHHHcCCCCC-HHHHHHcCCCcEecCHHHHHHHHHHHH---------------------------------------
Confidence            9999999999999 999999999999999887765444443                                       


Q ss_pred             cCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHH
Q 015014          306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL  385 (414)
Q Consensus       306 F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~  385 (414)
                                                       ++|++.||.+++.+|++++...         ..++++.++.|...+.
T Consensus       214 ---------------------------------~~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~  251 (277)
T PRK08258        214 ---------------------------------RRLAAGPTFAHGMTKTMLHQEW---------DMGLEEAIEAEAQAQA  251 (277)
T ss_pred             ---------------------------------HHHHhCCHHHHHHHHHHHHhhc---------cCCHHHHHHHHHHHHH
Confidence                                             3499999999999999999875         5679999999999999


Q ss_pred             HhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          386 RSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       386 ~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .++.++|++||+++|+  ++++|+|
T Consensus       252 ~~~~s~d~~eg~~af~--ekr~p~~  274 (277)
T PRK08258        252 ICMQTEDFRRAYEAFV--AKRKPVF  274 (277)
T ss_pred             HHhcCchHHHHHHHHh--cCCCCCC
Confidence            9999999999999999  6777775

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-52  Score=403.23  Aligned_cols=261  Identities=23%  Similarity=0.353  Sum_probs=225.5

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEeCCCCCccCCCChhhHHHHhhhC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDP-RVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~-~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~  141 (414)
                      |.|+.+.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+ ++++|||+|.| ++||+|+|++++.......
T Consensus         1 ~~~~~v~~~~-~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~   78 (266)
T PRK05981          1 MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGRGSGGRES   78 (266)
T ss_pred             CCcceEEEEe-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcccccCHHhhhcccccc
Confidence            4577888886 7899999999999999999999999999999999876 49999999997 8999999999875321000


Q ss_pred             C-CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhC
Q 015014          142 R-NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG  220 (414)
Q Consensus       142 ~-~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~  220 (414)
                      . .......+......++.+|..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~  158 (266)
T PRK05981         79 DSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL  158 (266)
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence            0 001112233334567788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHH
Q 015014          221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP  300 (414)
Q Consensus       221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  300 (414)
                      +|.. ++++|++||+.++ |+||+++|||++++|++++.+.+.+++                                  
T Consensus       159 vg~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~~~~~a~~~a----------------------------------  202 (266)
T PRK05981        159 VGKA-RAMELSLLGEKLP-AETALQWGLVNRVVDDAELMAEAMKLA----------------------------------  202 (266)
T ss_pred             hHHH-HHHHHHHhCCCcC-HHHHHHcCCceEeeCHhHHHHHHHHHH----------------------------------
Confidence            9998 9999999999999 999999999999999888765443333                                  


Q ss_pred             HHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHH
Q 015014          301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE  380 (414)
Q Consensus       301 ~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e  380 (414)
                                                            ++|++.||.+++.+|++++...         ..++.+.++.|
T Consensus       203 --------------------------------------~~l~~~~~~a~~~~K~~~~~~~---------~~~~~~~~~~e  235 (266)
T PRK05981        203 --------------------------------------HELANGPTVALGLIRKLYWDSP---------ENDFEEQLNLE  235 (266)
T ss_pred             --------------------------------------HHHHcCCHHHHHHHHHHHHHhh---------hcCHHHHHHHH
Confidence                                                  2488999999999999998875         56799999999


Q ss_pred             HHHHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          381 YRVALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       381 ~~~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ...+..++.++|++||+.+|+  ++++|+|
T Consensus       236 ~~~~~~~~~s~d~~e~~~af~--~kr~~~~  263 (266)
T PRK05981        236 REAQRIAGKTEDFKEGVGAFL--QKRPAQF  263 (266)
T ss_pred             HHHHHHHhcChhHHHHHHHHh--cCCCCCC
Confidence            999999999999999999999  6777775

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-52  Score=405.16  Aligned_cols=263  Identities=25%  Similarity=0.335  Sum_probs=224.5

Q ss_pred             CCCccEEEEEecC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhC
Q 015014           63 GAEEFVKGNVHPN-GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (414)
Q Consensus        63 ~~~~~v~~~~~~~-~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~  141 (414)
                      |.|+.+.++. ++ +|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.......
T Consensus         2 ~~~~~i~~~~-~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~   79 (272)
T PRK06210          2 MAYDAVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG-RGFCAGADMGELQTIDPSD   79 (272)
T ss_pred             CCcceEEEEE-CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCcccccCHHHHhccCccc
Confidence            4567788887 67 9999999999999999999999999999999999999999999997 8999999999875421100


Q ss_pred             CC-CCchHHHH----HHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHH
Q 015014          142 RN-TPLVPKVF----TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYI  216 (414)
Q Consensus       142 ~~-~~~~~~~~----~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~  216 (414)
                      .. ......+.    ....+++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~  159 (272)
T PRK06210         80 GRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWI  159 (272)
T ss_pred             ccccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhh
Confidence            00 00001111    11234567889999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhh
Q 015014          217 AAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLK  296 (414)
Q Consensus       217 L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  296 (414)
                      |++++|.. ++++|++||+.++ |+||+++||||+++|++++.+.+.++++                             
T Consensus       160 l~~~ig~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~-----------------------------  208 (272)
T PRK06210        160 LPRLVGHA-NALDLLLSARTFY-AEEALRLGLVNRVVPPDELMERTLAYAE-----------------------------  208 (272)
T ss_pred             hHhhhCHH-HHHHHHHcCCccC-HHHHHHcCCcceecCHHHHHHHHHHHHH-----------------------------
Confidence            99999998 9999999999999 9999999999999998777654433332                             


Q ss_pred             hhHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHHhhcCCCCcccCCHHH
Q 015014          297 LLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKG-APFSLCLTQKYFSKVASAHGKTDNELSKLSG  375 (414)
Q Consensus       297 ~~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~-sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~  375 (414)
                                                                 +|++. ||.+++.+|+.+++..         ..++++
T Consensus       209 -------------------------------------------~i~~~~~p~a~~~~K~~l~~~~---------~~~l~~  236 (272)
T PRK06210        209 -------------------------------------------DLARNVSPASMAVIKRQLYEDA---------FQTLAE  236 (272)
T ss_pred             -------------------------------------------HHHhcCCHHHHHHHHHHHHhcc---------cCCHHH
Confidence                                                       48875 9999999999999865         567999


Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHhhHhCCCCCCCCCc
Q 015014          376 VMKYEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQLK  412 (414)
Q Consensus       376 ~l~~e~~~~~~~~~~~D~~eGv~afl~dk~~~P~~~~  412 (414)
                      .++.|...+...+.++|++|||++|+  ++++|.|..
T Consensus       237 ~~~~e~~~~~~~~~~~~~~egi~af~--~kr~p~~~~  271 (272)
T PRK06210        237 ATARANREMHESLQRPDFIEGVASFL--EKRPPRFPG  271 (272)
T ss_pred             HHHHHHHHHHHHhcCccHHHHHHHHh--ccCCCCCCC
Confidence            99999999999999999999999999  677888754

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.7e-52  Score=400.08  Aligned_cols=254  Identities=22%  Similarity=0.303  Sum_probs=224.6

Q ss_pred             EEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCch
Q 015014           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (414)
Q Consensus        68 v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (414)
                      +.++. +++|++|+||||++.|++|.+|+.+|.++++.+++|+++|+|||+|.| ++||+|+|++++....  .......
T Consensus         5 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~~G~Dl~~~~~~~--~~~~~~~   80 (260)
T PRK07511          5 LLSRR-EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNRLLENR--AKPPSVQ   80 (260)
T ss_pred             eEEEe-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCC-CCcccCcCHHHHhhcc--cccchhH
Confidence            66775 799999999999999999999999999999999999999999999997 8999999999875421  0111222


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHH
Q 015014          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (414)
Q Consensus       148 ~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a  227 (414)
                      ..++...++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.+ ++
T Consensus        81 ~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~-~a  159 (260)
T PRK07511         81 AASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQ-LA  159 (260)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHH-HH
Confidence            33455566788899999999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcC
Q 015014          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS  307 (414)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~  307 (414)
                      ++|++||++++ |+||+++||||+|||++++.+.+.+++                                         
T Consensus       160 ~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~~~~~a~~~a-----------------------------------------  197 (260)
T PRK07511        160 TELLLEGKPIS-AERLHALGVVNRLAEPGQALAEALALA-----------------------------------------  197 (260)
T ss_pred             HHHHHhCCCCC-HHHHHHcCCccEeeCchHHHHHHHHHH-----------------------------------------
Confidence            99999999999 999999999999999887755433332                                         


Q ss_pred             CcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHh
Q 015014          308 SEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRS  387 (414)
Q Consensus       308 ~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~  387 (414)
                                                     ++|+++||.+++.+|+.++...         ..++.++++.|...+...
T Consensus       198 -------------------------------~~l~~~~~~~~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~  237 (260)
T PRK07511        198 -------------------------------DQLAAGSPNALARIKSLIADAP---------EATLAAQLEAERDHFVAS  237 (260)
T ss_pred             -------------------------------HHHHhCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHHHHHHH
Confidence                                           2489999999999999999876         568999999999999999


Q ss_pred             CCCchHHHHHHhhHhCCCCCCCC
Q 015014          388 SLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       388 ~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +.++|++|||++|+  ++++|+|
T Consensus       238 ~~~~~~~~~i~~f~--~~r~~~~  258 (260)
T PRK07511        238 LHHADALEGIAAFL--EKRAPDY  258 (260)
T ss_pred             hcCchHHHHHHHHh--ccCCCCC
Confidence            99999999999999  6677775

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.6e-52  Score=401.73  Aligned_cols=257  Identities=19%  Similarity=0.230  Sum_probs=217.8

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      .|+.|.++.++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....   ..
T Consensus         9 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---~~   84 (268)
T PRK07327          9 DYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGGDLALVEEMA---DD   84 (268)
T ss_pred             CCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCC-CCcccccCHHHHhhcc---Cc
Confidence            4677888864688999999999999999999999999999999999999999999998 8999999999875421   11


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      ......++.....++..|..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  164 (268)
T PRK07327         85 FEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGM  164 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCH
Confidence            11122344445567888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|++||++++ |+||+++|||++++|++++.+.+.++++                                    
T Consensus       165 ~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~------------------------------------  206 (268)
T PRK07327        165 A-KAKYYLLLCEPVS-GEEAERIGLVSLAVDDDELLPKALEVAE------------------------------------  206 (268)
T ss_pred             H-HHHHHHHcCCccC-HHHHHHcCCcceecCHHHHHHHHHHHHH------------------------------------
Confidence            8 9999999999999 9999999999999998887665544433                                    


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                          +|++.||.+++.+|++++.....      ....+++.+..|.  
T Consensus       207 ------------------------------------~la~~~~~a~~~~K~~l~~~~~~------~~~~~~~~~~~~~--  242 (268)
T PRK07327        207 ------------------------------------RLAAGSQTAIRWTKYALNNWLRM------AGPTFDTSLALEF--  242 (268)
T ss_pred             ------------------------------------HHHcCCHHHHHHHHHHHHHhhhh------hhhhHHHHHHHHH--
Confidence                                                49999999999999999975300      0123555555443  


Q ss_pred             HHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          384 ALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                        ..+.++|++||+.+|+  ++++|+|
T Consensus       243 --~~~~~~d~~eg~~af~--ekr~p~~  265 (268)
T PRK07327        243 --MGFSGPDVREGLASLR--EKRAPDF  265 (268)
T ss_pred             --HHccChhHHHHHHHHH--hcCCCCC
Confidence              3678999999999999  6778886

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=6.1e-52  Score=399.31  Aligned_cols=254  Identities=20%  Similarity=0.285  Sum_probs=220.0

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      .+.+.|.++..+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.....   
T Consensus         6 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~---   81 (265)
T PLN02888          6 VSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSG-RAFCSGVDLTAAEEVFK---   81 (265)
T ss_pred             CCCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CcccCCCCHHHHHhhcc---
Confidence            45677888754789999999999999999999999999999999999999999999998 89999999998653210   


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                       .. ..   .....++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|
T Consensus        82 -~~-~~---~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  156 (265)
T PLN02888         82 -GD-VK---DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIG  156 (265)
T ss_pred             -ch-hh---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhC
Confidence             01 11   11234566789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||++++ |+||+++||||++||++++.+.+.+++                                    
T Consensus       157 ~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a------------------------------------  198 (265)
T PLN02888        157 AN-RAREVSLTAMPLT-AETAERWGLVNHVVEESELLKKAREVA------------------------------------  198 (265)
T ss_pred             HH-HHHHHHHhCCccC-HHHHHHcCCccEeeChHHHHHHHHHHH------------------------------------
Confidence            98 9999999999999 999999999999999887765444433                                    


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                                                          ++|++.+|.+++.+|++++...         ..+++++++.|..
T Consensus       199 ------------------------------------~~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~  233 (265)
T PLN02888        199 ------------------------------------EAIIKNNQGMVLRYKSVINDGL---------KLDLGHALQLEKE  233 (265)
T ss_pred             ------------------------------------HHHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHH
Confidence                                                3599999999999999999876         5678999999988


Q ss_pred             HHHHhC--CCchHHHHHHhhHhCCCCCCCC
Q 015014          383 VALRSS--LRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       383 ~~~~~~--~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .+..++  .++|++||+++|+  ++++|+.
T Consensus       234 ~~~~~~~~~~~d~~e~~~af~--ekr~~~~  261 (265)
T PLN02888        234 RAHDYYNGMTKEQFQKMQEFI--AGRSSKK  261 (265)
T ss_pred             HHHHHhccCCHHHHHHHHHHH--hcCCCCC
Confidence            777764  5999999999999  5566654

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=6.6e-52  Score=398.48  Aligned_cols=251  Identities=21%  Similarity=0.332  Sum_probs=218.0

Q ss_pred             cEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCc
Q 015014           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (414)
Q Consensus        67 ~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (414)
                      .+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|++||+|||+|.|+++||+|+|++++....   ...  
T Consensus         4 ~i~~~~-~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~---~~~--   76 (261)
T PRK03580          4 SLHTTR-NGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGE---APD--   76 (261)
T ss_pred             eEEEEE-ECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccC---cch--
Confidence            367776 7899999999996 599999999999999999999999999999999867999999999875311   110  


Q ss_pred             hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHH
Q 015014          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~  226 (414)
                       ..+....+..+.++..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        77 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~-~  154 (261)
T PRK03580         77 -ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPA-I  154 (261)
T ss_pred             -hhhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHH-H
Confidence             11222223456788999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhc
Q 015014          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF  306 (414)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F  306 (414)
                      ++++++||+.++ |+||+++|||++++|++++.+.+.++++                                       
T Consensus       155 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~---------------------------------------  194 (261)
T PRK03580        155 ANEMVMTGRRMD-AEEALRWGIVNRVVPQAELMDRARELAQ---------------------------------------  194 (261)
T ss_pred             HHHHHHhCCccC-HHHHHHcCCCcEecCHhHHHHHHHHHHH---------------------------------------
Confidence            999999999999 9999999999999998887665444433                                       


Q ss_pred             CCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH----
Q 015014          307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR----  382 (414)
Q Consensus       307 ~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~----  382 (414)
                                                       +|++.||.+++.+|++++...         ..+++++++.|..    
T Consensus       195 ---------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~  232 (261)
T PRK03580        195 ---------------------------------QLVNSAPLAIAALKEIYRETS---------EMPVEEAYRYIRSGVLK  232 (261)
T ss_pred             ---------------------------------HHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHhhhHH
Confidence                                             489999999999999999876         5678999998864    


Q ss_pred             HHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          383 VALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       383 ~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .+...+.++|++||+++|+  ++++|+|
T Consensus       233 ~~~~~~~~~d~~e~~~af~--ekr~~~~  258 (261)
T PRK03580        233 HYPSVLHSEDALEGPRAFA--EKRDPVW  258 (261)
T ss_pred             HHHHHhcCccHHHHHHHHh--cCCCCCC
Confidence            6677889999999999999  6677775

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.9e-52  Score=399.16  Aligned_cols=253  Identities=26%  Similarity=0.354  Sum_probs=223.6

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      ++.+.++. +++|++|+||||++.|++|.+|+.+|.++++.+ .|+++++|||+|.| ++||+|+|++++....    ..
T Consensus         5 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~----~~   77 (260)
T PRK07659          5 MESVVVKY-EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNG-RGFSAGGDIKMMLSSN----DE   77 (260)
T ss_pred             CceEEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCC-CCcccccCHHHHhhcc----Cc
Confidence            45588886 799999999999999999999999999999999 58899999999997 8999999999875311    11


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      .....++...++++.++..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~  157 (260)
T PRK07659         78 SKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGEN  157 (260)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHH
Confidence            22334555566778889999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       ++++|++||+.++ |+||+++||||++| ++++.+.+.+++                                      
T Consensus       158 -~a~~l~ltg~~~~-a~eA~~~Glv~~vv-~~~~~~~a~~~a--------------------------------------  196 (260)
T PRK07659        158 -KAKQIIWEGKKLS-ATEALDLGLIDEVI-GGDFQTAAKQKI--------------------------------------  196 (260)
T ss_pred             -HHHHHHHhCCccC-HHHHHHcCChHHHh-hhHHHHHHHHHH--------------------------------------
Confidence             9999999999999 99999999999999 677755443333                                      


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                                                        ++|++.||.+++.+|++++...         ..++++.++.|...+
T Consensus       197 ----------------------------------~~l~~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~  233 (260)
T PRK07659        197 ----------------------------------SEWLQKPLKAMIETKQIYCELN---------RSQLEQVLQLEKRAQ  233 (260)
T ss_pred             ----------------------------------HHHHhCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHHHH
Confidence                                              3589999999999999999875         567999999999999


Q ss_pred             HHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          385 LRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       385 ~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ...+.++|++|||.+|+  ++|+|+|
T Consensus       234 ~~~~~~~~~~egi~af~--~kr~p~~  257 (260)
T PRK07659        234 YAMRQTADHKEGIRAFL--EKRLPVF  257 (260)
T ss_pred             HHHhcCHhHHHHHHHHh--cCCCCCC
Confidence            99999999999999999  6777875

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=6e-52  Score=398.63  Aligned_cols=256  Identities=16%  Similarity=0.195  Sum_probs=221.5

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCccCCCChhhHHHHhhhC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSG-PRAFCAGMDIKGVVAEIQKD  141 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g-~~~FcaG~Dl~~~~~~~~~~  141 (414)
                      |+++.+.++. +++|++||||||+++|+||.+|+.+|.++++.+++|+ +++|||+|.| +++||+|+|++++....   
T Consensus         1 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~---   75 (261)
T PRK11423          1 MSMQYVNVVT-INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGG---   75 (261)
T ss_pred             CCccceEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcc---
Confidence            4567788887 7999999999999999999999999999999999988 9999999964 48999999999874311   


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCC
Q 015014          142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP  221 (414)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~  221 (414)
                        .+ ...+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++
T Consensus        76 --~~-~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~v  152 (261)
T PRK11423         76 --RD-PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDA  152 (261)
T ss_pred             --cc-HHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHh
Confidence              01 122334445678889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHH
Q 015014          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ  301 (414)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  301 (414)
                      |.. ++++|++||++++ |+||+++||||+|||++++++.+.++                                    
T Consensus       153 g~~-~a~~l~l~g~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~------------------------------------  194 (261)
T PRK11423        153 GFH-IVKEMFFTASPIT-AQRALAVGILNHVVEVEELEDFTLQM------------------------------------  194 (261)
T ss_pred             HHH-HHHHHHHcCCCcC-HHHHHHcCCcCcccCHHHHHHHHHHH------------------------------------
Confidence            998 9999999999999 99999999999999988776544443                                    


Q ss_pred             HHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCH-HHHHHHH
Q 015014          302 ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKL-SGVMKYE  380 (414)
Q Consensus       302 i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l-~~~l~~e  380 (414)
                                                          +++|++.||.+++.+|+.++...        ....+ .+.++.|
T Consensus       195 ------------------------------------a~~l~~~~~~a~~~~K~~~~~~~--------~~~~~~~~~~~~~  230 (261)
T PRK11423        195 ------------------------------------AHHISEKAPLAIAVIKEQLRVLG--------EAHPMNPDEFERI  230 (261)
T ss_pred             ------------------------------------HHHHHhcCHHHHHHHHHHHHhhc--------ccCCcchHHHHHH
Confidence                                                34599999999999999998653        11233 6788889


Q ss_pred             HHHHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          381 YRVALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       381 ~~~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ......++.++|++||+.+|+  ++++|+|
T Consensus       231 ~~~~~~~~~s~d~~eg~~af~--~kr~p~~  258 (261)
T PRK11423        231 QGLRRAVYDSEDYQEGMNAFL--EKRKPVF  258 (261)
T ss_pred             HHHHHHHhCChhHHHHHHHHh--ccCCCCC
Confidence            899899999999999999999  6677775

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.5e-52  Score=400.77  Aligned_cols=263  Identities=22%  Similarity=0.280  Sum_probs=219.4

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC-
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR-  142 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~-  142 (414)
                      .++.|.++..+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++......+. 
T Consensus         7 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~~~   85 (276)
T PRK05864          7 TMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADHKSAGVVPHVEGL   85 (276)
T ss_pred             CCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcchhhhhcccccccc
Confidence            3566777754689999999999999999999999999999999999999999999987 89999999998743110000 


Q ss_pred             -CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCC-ChhHHHHHhhC
Q 015014          143 -NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP-DVGFSYIAAKG  220 (414)
Q Consensus       143 -~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P-~~g~~~~L~r~  220 (414)
                       ........+.....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~  165 (276)
T PRK05864         86 TRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRA  165 (276)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhh
Confidence             0111112233345567788999999999999999999999999999999999999999999999997 78999999999


Q ss_pred             CCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHH
Q 015014          221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP  300 (414)
Q Consensus       221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  300 (414)
                      +|.. ++++|++||++++ |+||+++|||++++|++++.+.+.++++                                 
T Consensus       166 vG~~-~A~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~---------------------------------  210 (276)
T PRK05864        166 IGSS-RAFEIMLTGRDVD-AEEAERIGLVSRQVPDEQLLDTCYAIAA---------------------------------  210 (276)
T ss_pred             hCHH-HHHHHHHcCCccC-HHHHHHcCCcceeeCHHHHHHHHHHHHH---------------------------------
Confidence            9998 9999999999999 9999999999999998887654444433                                 


Q ss_pred             HHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccC-CHHHHHHH
Q 015014          301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELS-KLSGVMKY  379 (414)
Q Consensus       301 ~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~-~l~~~l~~  379 (414)
                                                             +|++.||.+++.+|+.++...         .. ++++.+..
T Consensus       211 ---------------------------------------~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~~  242 (276)
T PRK05864        211 ---------------------------------------RMAGFSRPGIELTKRTLWSGL---------DAASLEAHMQA  242 (276)
T ss_pred             ---------------------------------------HHHhCCHHHHHHHHHHHHhhc---------ccCCHHHHHHH
Confidence                                                   489999999999999998764         33 68888888


Q ss_pred             HHHHHH-HhCCCchHHHHHHhhHhCCCCCCCCCc
Q 015014          380 EYRVAL-RSSLRSDFAEGVRAVLVDKDQVLSQLK  412 (414)
Q Consensus       380 e~~~~~-~~~~~~D~~eGv~afl~dk~~~P~~~~  412 (414)
                      |..... ..+.++|++||+++|+  ++++|+|-+
T Consensus       243 e~~~~~~~~~~~~d~~e~~~af~--~kr~p~~~~  274 (276)
T PRK05864        243 EGLGQLFVRLLTANFEEAVAARA--EKRPPVFTD  274 (276)
T ss_pred             HHHHHHHHhccChhHHHHHHHHh--ccCCCCCCC
Confidence            865332 3578999999999999  677787644

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.6e-52  Score=397.85  Aligned_cols=252  Identities=23%  Similarity=0.277  Sum_probs=216.6

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      .+.+.++. +++|++|+||||+++|+||.+|+++|.++++.++.|+++++|||+|.|+++||+|+|++++....    ..
T Consensus         7 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~----~~   81 (262)
T PRK06144          7 TDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFS----TA   81 (262)
T ss_pred             CCceEEEe-eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhcc----ch
Confidence            45678886 78999999999999999999999999999999999999999999999867999999999875421    11


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEeccccc-CCCCCChhHHHHHhhCCCc
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG-IGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~-~Gl~P~~g~~~~L~r~~G~  223 (414)
                      +....+......++..+.++||||||+|||+|+|||++|+++||||||+++++|++||++ +|++|++|++++|++++|.
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~  161 (262)
T PRK06144         82 EDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGA  161 (262)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCH
Confidence            111223344456777899999999999999999999999999999999999999999996 9999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . +++++++||+.++ |+||+++|||++|+|++++.+.+.+++                                     
T Consensus       162 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a-------------------------------------  202 (262)
T PRK06144        162 A-RVKDMLFTARLLE-AEEALAAGLVNEVVEDAALDARADALA-------------------------------------  202 (262)
T ss_pred             H-HHHHHHHcCCCcC-HHHHHHcCCcCeecCHHHHHHHHHHHH-------------------------------------
Confidence            8 9999999999999 999999999999999887765444443                                     


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                         ++|++.||.+++.+|+.++...         ...+    +.+.+.
T Consensus       203 -----------------------------------~~i~~~~~~a~~~~K~~l~~~~---------~~~l----~~~~~~  234 (262)
T PRK06144        203 -----------------------------------ELLAAHAPLTLRATKEALRRLR---------REGL----PDGDDL  234 (262)
T ss_pred             -----------------------------------HHHHhCCHHHHHHHHHHHHHhh---------hcCH----HHHHHH
Confidence                                               3599999999999999999765         2333    445566


Q ss_pred             HHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          384 ALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +...+.++|++||+++|+  ++++|+|
T Consensus       235 ~~~~~~~~~~~e~~~af~--~kr~p~~  259 (262)
T PRK06144        235 IRMCYMSEDFREGVEAFL--EKRPPKW  259 (262)
T ss_pred             HHHHhcChHHHHHHHHHh--cCCCCCC
Confidence            777889999999999999  6777775

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-51  Score=395.65  Aligned_cols=253  Identities=23%  Similarity=0.362  Sum_probs=220.1

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      .|+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.+++|+++|+|||+|.| ++||+|+|++++....   ..
T Consensus         2 ~~~~i~~~~-~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~---~~   75 (257)
T PRK06495          2 MMSQLKLEV-SDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGADLKGRPDVI---KG   75 (257)
T ss_pred             CcceEEEEe-eCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCcccCcCHHhHhhcc---CC
Confidence            356688876 7899999999998 5999999999999999999999999999999997 8999999999875421   01


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      ......+......++.++.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++   |++++|++++|.
T Consensus        76 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~  152 (257)
T PRK06495         76 PGDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGH  152 (257)
T ss_pred             chhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCH
Confidence            11122233444567788999999999999999999999999999999999999999999999996   556789999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|++||+.++ |+||+++|||+++||++++.+.+.+++                                     
T Consensus       153 ~-~a~~lll~g~~~~-a~eA~~~GLv~~vv~~~~~~~~a~~~a-------------------------------------  193 (257)
T PRK06495        153 S-LTRRMMLTGYRVP-AAELYRRGVIEACLPPEELMPEAMEIA-------------------------------------  193 (257)
T ss_pred             H-HHHHHHHcCCeeC-HHHHHHcCCcceecCHHHHHHHHHHHH-------------------------------------
Confidence            8 9999999999999 999999999999999888765444433                                     


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                         ++|++.||.+++.+|++++...         ..++.++++.|.+.
T Consensus       194 -----------------------------------~~l~~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~  229 (257)
T PRK06495        194 -----------------------------------REIASKSPLATRLAKDALNTIE---------NMSLRDGYRYEQDI  229 (257)
T ss_pred             -----------------------------------HHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Confidence                                               3599999999999999999876         56899999999999


Q ss_pred             HHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          384 ALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +...+.++|++||+++|+  ++++|+|
T Consensus       230 ~~~~~~s~d~~egi~af~--~kr~p~~  254 (257)
T PRK06495        230 TAKLAKTEDAKEAQRAFL--EKRPPVF  254 (257)
T ss_pred             HHHHhcChHHHHHHHHHh--ccCCCCC
Confidence            999999999999999999  6777875

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-51  Score=395.30  Aligned_cols=250  Identities=25%  Similarity=0.344  Sum_probs=220.2

Q ss_pred             ccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCC
Q 015014           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (414)
Q Consensus        66 ~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (414)
                      +++.++. +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++...... ....
T Consensus         2 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~-~~~~   78 (255)
T PRK07260          2 EHIIYEV-EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANG-KVFSVGGDLVEMKRAVDE-DDVQ   78 (255)
T ss_pred             CceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccccCHHHHHhhccc-cchh
Confidence            4577776 789999999999999999999999999999999999999999999997 899999999987642211 1111


Q ss_pred             chHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHH
Q 015014          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (414)
Q Consensus       146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~  225 (414)
                      ....+....++++.++.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~-  157 (255)
T PRK07260         79 SLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLN-  157 (255)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHH-
Confidence            1112333445677789999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhh
Q 015014          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (414)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~  305 (414)
                      ++++|++||++++ |+||+++|||++++|++++.+.+.++++                                      
T Consensus       158 ~a~~l~l~g~~~s-a~eA~~~Glv~~vv~~~~l~~~a~~~a~--------------------------------------  198 (255)
T PRK07260        158 RATHLAMTGEALT-AEKALEYGFVYRVAESEKLEKTCEQLLK--------------------------------------  198 (255)
T ss_pred             HHHHHHHhCCccC-HHHHHHcCCcceecCHhHHHHHHHHHHH--------------------------------------
Confidence            9999999999999 9999999999999998877655444433                                      


Q ss_pred             cCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHH
Q 015014          306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL  385 (414)
Q Consensus       306 F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~  385 (414)
                                                        +|++.||.+++.+|+.++...         ..++++.+..|...+.
T Consensus       199 ----------------------------------~la~~~~~a~~~~K~~~~~~~---------~~~~~~~~~~e~~~~~  235 (255)
T PRK07260        199 ----------------------------------KLRRGSSNSYAAIKSLVWESF---------FKGWEDYAKLELALQE  235 (255)
T ss_pred             ----------------------------------HHHcCCHHHHHHHHHHHHHHh---------hcCHHHHHHHHHHHHH
Confidence                                              499999999999999999876         5679999999999999


Q ss_pred             HhCCCchHHHHHHhhH
Q 015014          386 RSSLRSDFAEGVRAVL  401 (414)
Q Consensus       386 ~~~~~~D~~eGv~afl  401 (414)
                      ..+.++|++|||++|+
T Consensus       236 ~~~~~~~~~e~~~af~  251 (255)
T PRK07260        236 SLAFKEDFKEGVRAFS  251 (255)
T ss_pred             HHhcCHHHHHHHHHHH
Confidence            9999999999999999

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-51  Score=396.15  Aligned_cols=254  Identities=25%  Similarity=0.363  Sum_probs=225.3

Q ss_pred             ccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCC
Q 015014           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (414)
Q Consensus        66 ~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (414)
                      +.+.+++ +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++....    ...
T Consensus         5 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~----~~~   78 (259)
T PRK06688          5 TDLLVEL-EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAG-RAFSAGGDIKDFPKAP----PKP   78 (259)
T ss_pred             CceEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCccCHHHHhccC----cch
Confidence            3477776 789999999999999999999999999999999999999999999998 8999999999876421    111


Q ss_pred             chHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHH
Q 015014          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (414)
Q Consensus       146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~  225 (414)
                        ..+....++++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. 
T Consensus        79 --~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~-  155 (259)
T PRK06688         79 --PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRA-  155 (259)
T ss_pred             --HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHH-
Confidence              22444556778889999999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhh
Q 015014          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (414)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~  305 (414)
                      ++++|++||+.++ |+||+++||||+++|++++.+.+.+++                                       
T Consensus       156 ~a~~l~l~g~~~~-a~eA~~~Glv~~v~~~~~l~~~a~~~a---------------------------------------  195 (259)
T PRK06688        156 RAAEMLLLGEPLS-AEEALRIGLVNRVVPAAELDAEADAQA---------------------------------------  195 (259)
T ss_pred             HHHHHHHhCCccC-HHHHHHcCCcceecCHHHHHHHHHHHH---------------------------------------
Confidence            9999999999999 999999999999999877765444333                                       


Q ss_pred             cCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHH
Q 015014          306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL  385 (414)
Q Consensus       306 F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~  385 (414)
                                                       ++|++.||.+++.+|+.+++..         ..++++++..|.+.+.
T Consensus       196 ---------------------------------~~i~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~  233 (259)
T PRK06688        196 ---------------------------------AKLAAGPASALRYTKRAINAAT---------LTELEEALAREAAGFG  233 (259)
T ss_pred             ---------------------------------HHHHhCCHHHHHHHHHHHHhhh---------hCCHHHHHHHHHHHHH
Confidence                                             3488999999999999999876         5679999999999999


Q ss_pred             HhCCCchHHHHHHhhHhCCCCCCCCCc
Q 015014          386 RSSLRSDFAEGVRAVLVDKDQVLSQLK  412 (414)
Q Consensus       386 ~~~~~~D~~eGv~afl~dk~~~P~~~~  412 (414)
                      ..+.++|+++|+++|+  ++++|+|-.
T Consensus       234 ~~~~~~~~~~~~~af~--~~~~p~~~~  258 (259)
T PRK06688        234 RLLRTPDFREGATAFI--EKRKPDFTG  258 (259)
T ss_pred             HHhCCHHHHHHHHHHH--cCCCCCCCC
Confidence            9999999999999999  567787643

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=1.5e-51  Score=395.19  Aligned_cols=253  Identities=30%  Similarity=0.428  Sum_probs=221.7

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      +..+.++. .++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+||+++.. . .  ..
T Consensus         4 ~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g-~~FsaG~Dl~~~~~-~-~--~~   77 (257)
T COG1024           4 YETILVER-EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG-KAFSAGADLKELLS-P-E--DG   77 (257)
T ss_pred             CCeeEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhc-c-c--ch
Confidence            45577776 566999999999999999999999999999999999999999999998 99999999999875 1 1  11


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      .....++...+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~  157 (257)
T COG1024          78 NAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRG  157 (257)
T ss_pred             hHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHH
Confidence            11124566667789999999999999999999999999999999999999999999999999999889999999999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCC-CCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                       ++++|++||+.++ |+||+++|||+++++. +++.+.+.++++                                    
T Consensus       158 -~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~~l~~~a~~~a~------------------------------------  199 (257)
T COG1024         158 -RAKELLLTGEPIS-AAEALELGLVDEVVPDAEELLERALELAR------------------------------------  199 (257)
T ss_pred             -HHHHHHHcCCcCC-HHHHHHcCCcCeeeCCHHHHHHHHHHHHH------------------------------------
Confidence             9999999999999 9999999999999985 566654444432                                    


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                          +|+. ||.+++.+|+.++...         ..++++.+..|...
T Consensus       200 ------------------------------------~~a~-~~~a~~~~k~~~~~~~---------~~~l~~~~~~~~~~  233 (257)
T COG1024         200 ------------------------------------RLAA-PPLALAATKRLVRAAL---------EADLAEALEAEALA  233 (257)
T ss_pred             ------------------------------------HHcc-CHHHHHHHHHHHHHhh---------hccHHHHHHHHHHH
Confidence                                                3555 9999999999999886         34499999999999


Q ss_pred             HHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          384 ALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +...+.++|++||+++|+.   |+|.|
T Consensus       234 ~~~~~~~~d~~eg~~a~~~---r~p~~  257 (257)
T COG1024         234 FARLFSSEDFREGVRAFLE---RKPVF  257 (257)
T ss_pred             HHHHhcChhHHHHHHHHHc---cCCCC
Confidence            9888889999999999994   77765

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=1.7e-51  Score=398.00  Aligned_cols=258  Identities=19%  Similarity=0.187  Sum_probs=219.2

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      +++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++....  ...
T Consensus        11 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~--~~~   87 (273)
T PRK07396         11 EYEDILYKS-ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGG--YVD   87 (273)
T ss_pred             CCcceEEEe-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhccc--ccc
Confidence            356688876 78999999999999999999999999999999999999999999999756999999999864210  000


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      ..... .+ ....++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.
T Consensus        88 ~~~~~-~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~  165 (273)
T PRK07396         88 DDGVP-RL-NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQ  165 (273)
T ss_pred             hhhhh-hh-HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhH
Confidence            11111 11 12346668899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|++||+.++ |+||+++||||+|||++++.+.+.++++                                    
T Consensus       166 ~-~a~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~------------------------------------  207 (273)
T PRK07396        166 K-KAREIWFLCRQYD-AQEALDMGLVNTVVPLADLEKETVRWCR------------------------------------  207 (273)
T ss_pred             H-HHHHHHHhCCCcC-HHHHHHcCCcCeecCHHHHHHHHHHHHH------------------------------------
Confidence            8 9999999999999 9999999999999998877655444433                                    


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                          +|++.||.+++.+|++++...         . .++...+.|...
T Consensus       208 ------------------------------------~la~~~~~a~~~~K~~l~~~~---------~-~~~~~~~~e~~~  241 (273)
T PRK07396        208 ------------------------------------EMLQNSPMALRCLKAALNADC---------D-GQAGLQELAGNA  241 (273)
T ss_pred             ------------------------------------HHHhCCHHHHHHHHHHHHhhh---------c-cHHHHHHHHHHH
Confidence                                                499999999999999999764         2 355556678888


Q ss_pred             HHHhCCCchHHHHHHhhHhCCCCCCCCCc
Q 015014          384 ALRSSLRSDFAEGVRAVLVDKDQVLSQLK  412 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~dk~~~P~~~~  412 (414)
                      +...+.++|++|||.+|+  ++|+|+|-+
T Consensus       242 ~~~~~~~~d~~egi~af~--~kr~p~~~~  268 (273)
T PRK07396        242 TMLFYMTEEAQEGRNAFN--EKRQPDFSK  268 (273)
T ss_pred             HHHHhcChhHHHHHHHHh--CCCCCCCCC
Confidence            888889999999999999  677787643

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-51  Score=402.55  Aligned_cols=262  Identities=24%  Similarity=0.343  Sum_probs=217.5

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhC--
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD--  141 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~--  141 (414)
                      .++.|.++. +++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.......  
T Consensus         2 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   79 (296)
T PRK08260          2 TYETIRYDV-ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG-RAFCAGADLSAGGNTFDLDAP   79 (296)
T ss_pred             CcceEEEee-eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CCeecCcChHHhhhccccccc
Confidence            356688886 789999999999999999999999999999999999999999999998 8999999999875311000  


Q ss_pred             ----------CCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCCh
Q 015014          142 ----------RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDV  211 (414)
Q Consensus       142 ----------~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~  211 (414)
                                ........+......++..|..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~  159 (296)
T PRK08260         80 RTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEA  159 (296)
T ss_pred             ccccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCc
Confidence                      0000111222223456778999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCC
Q 015014          212 GFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG  291 (414)
Q Consensus       212 g~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~  291 (414)
                      |++++|++++|.. ++++|++||++++ |+||+++|||++|||++++.+.+.+++                         
T Consensus       160 g~~~~l~r~vG~~-~A~~llltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a-------------------------  212 (296)
T PRK08260        160 ASSWFLPRLVGLQ-TALEWVYSGRVFD-AQEALDGGLVRSVHPPDELLPAARALA-------------------------  212 (296)
T ss_pred             chhhhHHHhhCHH-HHHHHHHcCCccC-HHHHHHCCCceeecCHHHHHHHHHHHH-------------------------
Confidence            9999999999998 9999999999999 999999999999999877765443333                         


Q ss_pred             cchhhhhHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHHhhcCCCCccc
Q 015014          292 EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKG-APFSLCLTQKYFSKVASAHGKTDNEL  370 (414)
Q Consensus       292 ~~~~~~~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~-sp~al~~tk~~l~~~~~~~~~~~~~~  370 (414)
                                                                     ++|+++ ||.+++.+|++++....       ..
T Consensus       213 -----------------------------------------------~~i~~~~~~~a~~~~K~~l~~~~~-------~~  238 (296)
T PRK08260        213 -----------------------------------------------REIADNTSPVSVALTRQMMWRMAG-------AD  238 (296)
T ss_pred             -----------------------------------------------HHHHhcCChHHHHHHHHHHHhccc-------CC
Confidence                                                           348875 99999999999997530       01


Q ss_pred             CCHHHHHHHHHHHHHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          371 SKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       371 ~~l~~~l~~e~~~~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      ..+. ....|...+...+.++|++||+.+|+  ++++|.|-
T Consensus       239 ~~~~-~~~~e~~~~~~~~~~~d~~egi~af~--~kr~p~f~  276 (296)
T PRK08260        239 HPME-AHRVDSRAIYSRGRSGDGKEGVSSFL--EKRPAVFP  276 (296)
T ss_pred             CcHH-HHHHHHHHHHHHccChhHHHHHHHHh--cCCCCCCC
Confidence            2333 34567778888889999999999999  67778763

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.3e-51  Score=393.92  Aligned_cols=255  Identities=22%  Similarity=0.291  Sum_probs=218.3

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      ++.+.+++ +++|++||||||++.|++|.+|+++|.++++.++.|+++++|||+|.| ++||+|+|++++....  ....
T Consensus         2 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~--~~~~   77 (262)
T PRK07509          2 MDRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEG-GAFCAGLDVKSVASSP--GNAV   77 (262)
T ss_pred             CceEEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCcCCCcCHHHHhccc--chhh
Confidence            35677886 799999999999999999999999999999999999999999999997 8999999999875421  0000


Q ss_pred             CchHH----HHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhC
Q 015014          145 PLVPK----VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG  220 (414)
Q Consensus       145 ~~~~~----~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~  220 (414)
                      .....    .......++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~  157 (262)
T PRK07509         78 KLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGL  157 (262)
T ss_pred             hhHhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHH
Confidence            11110    11122345667889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHH
Q 015014          221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP  300 (414)
Q Consensus       221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  300 (414)
                      +|.. ++++|++||++++ |+||+++||||+++++  +.+.+.                                     
T Consensus       158 ~g~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~--~~~~a~-------------------------------------  196 (262)
T PRK07509        158 VRKD-VARELTYTARVFS-AEEALELGLVTHVSDD--PLAAAL-------------------------------------  196 (262)
T ss_pred             hCHH-HHHHHHHcCCCcC-HHHHHHcCChhhhhch--HHHHHH-------------------------------------
Confidence            9998 9999999999999 9999999999999953  333222                                     


Q ss_pred             HHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHH
Q 015014          301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE  380 (414)
Q Consensus       301 ~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e  380 (414)
                                                     +|+    ++|++.||.+++.+|+.+++..         ..++.+++..|
T Consensus       197 -------------------------------~~a----~~l~~~~~~~~~~~K~~l~~~~---------~~~~~~~~~~e  232 (262)
T PRK07509        197 -------------------------------ALA----REIAQRSPDAIAAAKRLINRSW---------TASVRALLARE  232 (262)
T ss_pred             -------------------------------HHH----HHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHH
Confidence                                           233    3589999999999999999876         56789999999


Q ss_pred             HHHHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          381 YRVALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       381 ~~~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .+.+...+.++|++||+++|+  ++++|.|
T Consensus       233 ~~~~~~~~~~~d~~e~~~af~--ekr~p~~  260 (262)
T PRK07509        233 SVEQIRLLLGKNQKIAVKAQM--KKRAPKF  260 (262)
T ss_pred             HHHHHHHhcChhHHHHHHHHh--cCCCCCC
Confidence            999999999999999999999  6777875

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4e-51  Score=391.41  Aligned_cols=248  Identities=18%  Similarity=0.186  Sum_probs=211.8

Q ss_pred             cEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCc
Q 015014           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (414)
Q Consensus        67 ~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (414)
                      .|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++....   . .. 
T Consensus         4 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g-~~FcaG~Dl~~~~~~~---~-~~-   76 (254)
T PRK08259          4 SVRVER-NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAG-GTFCAGADLKAVGTGR---G-NR-   76 (254)
T ss_pred             eEEEEE-ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcChHHHhccc---c-hh-
Confidence            367775 789999999999999999999999999999999999999999999987 8999999999875321   0 00 


Q ss_pred             hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHH
Q 015014          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~  226 (414)
                      ....  ....+...+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        77 ~~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~-~  153 (254)
T PRK08259         77 LHPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHS-R  153 (254)
T ss_pred             hhhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHH-H
Confidence            0000  001112233479999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhc
Q 015014          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF  306 (414)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F  306 (414)
                      +++|++||+.++ |+||+++||||+|||++++.+.+.+++                                        
T Consensus       154 a~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a----------------------------------------  192 (254)
T PRK08259        154 AMDLILTGRPVD-ADEALAIGLANRVVPKGQARAAAEELA----------------------------------------  192 (254)
T ss_pred             HHHHHHcCCccC-HHHHHHcCCCCEeeChhHHHHHHHHHH----------------------------------------
Confidence            999999999999 999999999999999988865544443                                        


Q ss_pred             CCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHH
Q 015014          307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALR  386 (414)
Q Consensus       307 ~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~  386 (414)
                                                      ++|++.||.+++.+|+++++..         ..++++.++.|...+..
T Consensus       193 --------------------------------~~la~~~~~a~~~~K~~~~~~~---------~~~~~~~~~~e~~~~~~  231 (254)
T PRK08259        193 --------------------------------AELAAFPQTCLRADRLSALEQW---------GLPEEAALANEFAHGLA  231 (254)
T ss_pred             --------------------------------HHHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHH
Confidence                                            3499999999999999999865         56799999999987777


Q ss_pred             hCCCchHHHHHHhhHhCCCCCC
Q 015014          387 SSLRSDFAEGVRAVLVDKDQVL  408 (414)
Q Consensus       387 ~~~~~D~~eGv~afl~dk~~~P  408 (414)
                      .+. +|++|||++|+. |+++|
T Consensus       232 ~~~-~d~~egi~af~~-~~~~~  251 (254)
T PRK08259        232 VLA-AEALEGAARFAA-GAGRH  251 (254)
T ss_pred             HHh-hHHHHHHHHHHh-hhccc
Confidence            666 999999999994 44444

>PLN02921 naphthoate synthase

Probab=100.00  E-value=1.1e-50  Score=399.85  Aligned_cols=259  Identities=19%  Similarity=0.180  Sum_probs=218.3

Q ss_pred             CCccEEEEEe-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           64 AEEFVKGNVH-PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        64 ~~~~v~~~~~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      .++.|.++.. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++....  ..
T Consensus        63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~--~~  140 (327)
T PLN02921         63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDG--YV  140 (327)
T ss_pred             CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhccc--cc
Confidence            5677888863 58999999999999999999999999999999999999999999999867999999999764310  00


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                      .......+  ....++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|
T Consensus       141 ~~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG  218 (327)
T PLN02921        141 GPDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVG  218 (327)
T ss_pred             chhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhC
Confidence            01111111  1234667889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||+.++ |+||+++|||++|||++++++.+.++++                                   
T Consensus       219 ~~-~A~ellltG~~~~-A~eA~~~GLV~~vv~~~~l~~~a~~~a~-----------------------------------  261 (327)
T PLN02921        219 QK-KAREMWFLARFYT-ASEALKMGLVNTVVPLDELEGETVKWCR-----------------------------------  261 (327)
T ss_pred             HH-HHHHHHHcCCcCC-HHHHHHCCCceEEeCHHHHHHHHHHHHH-----------------------------------
Confidence            98 9999999999999 9999999999999998887665444433                                   


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                                                           +|+++||.+++.+|++++...         . ......+.|..
T Consensus       262 -------------------------------------~la~~~p~al~~~K~~l~~~~---------~-~~~~~~~~~~~  294 (327)
T PLN02921        262 -------------------------------------EILRNSPTAIRVLKSALNAAD---------D-GHAGLQELGGN  294 (327)
T ss_pred             -------------------------------------HHHccCHHHHHHHHHHHHHhh---------c-chhHHHHHHHH
Confidence                                                 499999999999999999765         2 23333444457


Q ss_pred             HHHHhCCCchHHHHHHhhHhCCCCCCCCCc
Q 015014          383 VALRSSLRSDFAEGVRAVLVDKDQVLSQLK  412 (414)
Q Consensus       383 ~~~~~~~~~D~~eGv~afl~dk~~~P~~~~  412 (414)
                      .+..++.++|++|||++|+  ++++|+|-+
T Consensus       295 ~~~~~~~s~d~~egi~Af~--ekr~p~f~~  322 (327)
T PLN02921        295 ATLLFYGSEEGNEGRTAYL--EGRAPDFSK  322 (327)
T ss_pred             HHHHHhcCHHHHHHHHHHh--ccCCCCCCC
Confidence            7777889999999999999  778888754

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=7.8e-51  Score=393.96  Aligned_cols=254  Identities=19%  Similarity=0.242  Sum_probs=219.1

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCccCCCChhhHHHHhhhC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP-RAFCAGMDIKGVVAEIQKD  141 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~-~~FcaG~Dl~~~~~~~~~~  141 (414)
                      .+.+.|.++..+++|++||||||+ .|+||.+|+.+|.++++.+++|+++|+|||||.|+ ++||+|+|++++...   .
T Consensus         8 ~~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~---~   83 (278)
T PLN03214          8 GATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAP---K   83 (278)
T ss_pred             CCCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhcc---c
Confidence            456678888646899999999986 69999999999999999999999999999999873 699999999987531   1


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCC-CCChhHHHHHhhC
Q 015014          142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGL-FPDVGFSYIAAKG  220 (414)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl-~P~~g~~~~L~r~  220 (414)
                      ........++.....++..|..+||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~  163 (278)
T PLN03214         84 TSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRV  163 (278)
T ss_pred             cchHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHh
Confidence            111111223333345677899999999999999999999999999999999999999999999999 5999999999999


Q ss_pred             CCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHH
Q 015014          221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP  300 (414)
Q Consensus       221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  300 (414)
                      +|.. ++++|++||+.++ |+||+++||||+|||.+++.+.+.+++                                  
T Consensus       164 ~G~~-~a~~llltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a----------------------------------  207 (278)
T PLN03214        164 IDRK-VAESLLLRGRLVR-PAEAKQLGLIDEVVPAAALMEAAASAM----------------------------------  207 (278)
T ss_pred             cCHH-HHHHHHHcCCccC-HHHHHHcCCCcEecChHHHHHHHHHHH----------------------------------
Confidence            9998 9999999999999 999999999999999877755443333                                  


Q ss_pred             HHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHH
Q 015014          301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE  380 (414)
Q Consensus       301 ~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e  380 (414)
                                                            ++|++.||.+++.+|+.+++..         ..+++++++.|
T Consensus       208 --------------------------------------~~l~~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e  240 (278)
T PLN03214        208 --------------------------------------ERALKLPSAARAATKALLREEF---------SAAWEAYYEEE  240 (278)
T ss_pred             --------------------------------------HHHHcCCHHHHHHHHHHHHhhH---------HHHHHHHHHHH
Confidence                                                  3599999999999999999876         45789999999


Q ss_pred             HHHHHHhCCCchHHHHHHhhHhC
Q 015014          381 YRVALRSSLRSDFAEGVRAVLVD  403 (414)
Q Consensus       381 ~~~~~~~~~~~D~~eGv~afl~d  403 (414)
                      .+.+...+.++|++||+++|+..
T Consensus       241 ~~~~~~~~~s~d~~egi~aflek  263 (278)
T PLN03214        241 AKGGWKMLSEPSIIKALGGVMER  263 (278)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999999999999999999953

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.2e-51  Score=389.64  Aligned_cols=243  Identities=22%  Similarity=0.319  Sum_probs=215.6

Q ss_pred             cEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCc
Q 015014           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (414)
Q Consensus        67 ~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (414)
                      .+.++. +++|++|+||||+++|+||.+|+++|.++++.+++|+++|+|||+|.| ++||+|+|++++....   .  ..
T Consensus         4 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~---~--~~   76 (249)
T PRK05870          4 PVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAG-KAFCAGADLTALGAAP---G--RP   76 (249)
T ss_pred             cEEEEc-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCeecCcChHHHhccc---c--cc
Confidence            366775 789999999999999999999999999999999999999999999997 8999999999876421   1  11


Q ss_pred             hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHH
Q 015014          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~  226 (414)
                      ....+...+.++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        77 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~-~  155 (249)
T PRK05870         77 AEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQ-V  155 (249)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHH-H
Confidence            122444555677789999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhc
Q 015014          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF  306 (414)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F  306 (414)
                      +++|++||++++ |+||+++||||++|  +++.+.+.+++                                        
T Consensus       156 a~~l~ltg~~~~-a~eA~~~Glv~~vv--~~l~~~a~~~a----------------------------------------  192 (249)
T PRK05870        156 ARAALLFGMRFD-AEAAVRHGLALMVA--DDPVAAALELA----------------------------------------  192 (249)
T ss_pred             HHHHHHhCCccC-HHHHHHcCCHHHHH--hhHHHHHHHHH----------------------------------------
Confidence            999999999999 99999999999999  55654443333                                        


Q ss_pred             CCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCccc-CCHHHHHHHHHHHHH
Q 015014          307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNEL-SKLSGVMKYEYRVAL  385 (414)
Q Consensus       307 ~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~-~~l~~~l~~e~~~~~  385 (414)
                                                      ++|++.||.+++.+|+.+++..         . .+++++++.|...+.
T Consensus       193 --------------------------------~~la~~~~~a~~~~K~~~~~~~---------~~~~l~~~~~~e~~~~~  231 (249)
T PRK05870        193 --------------------------------AGPAAAPRELVLATKASMRATA---------SLAQHAAAVEFELGPQA  231 (249)
T ss_pred             --------------------------------HHHHhCCHHHHHHHHHHHHhcc---------ccCCHHHHHHHHHHHHH
Confidence                                            3599999999999999999865         4 679999999999999


Q ss_pred             HhCCCchHHHHHHhhH
Q 015014          386 RSSLRSDFAEGVRAVL  401 (414)
Q Consensus       386 ~~~~~~D~~eGv~afl  401 (414)
                      ..+.++|++||+++|+
T Consensus       232 ~~~~~~d~~eg~~af~  247 (249)
T PRK05870        232 ASVQSPEFAARLAAAQ  247 (249)
T ss_pred             HHhcChhHHHHHHHHh
Confidence            9999999999999998

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-50  Score=386.97  Aligned_cols=245  Identities=18%  Similarity=0.240  Sum_probs=211.5

Q ss_pred             EEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHH
Q 015014           70 GNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPK  149 (414)
Q Consensus        70 ~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~  149 (414)
                      ++..+++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...   . .......
T Consensus         5 ~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~---~-~~~~~~~   78 (249)
T PRK07938          5 STTPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNAGVDIKELQAT---P-GFTALID   78 (249)
T ss_pred             ecccCCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCC-CceecCcCHHHHhhc---c-chhHHHH
Confidence            344478999999999985 999999999999999999999999999999997 899999999987531   1 1111111


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHH
Q 015014          150 VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY  229 (414)
Q Consensus       150 ~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~  229 (414)
                      .......++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++   |++++|++++|.. ++++
T Consensus        79 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~-~a~~  154 (249)
T PRK07938         79 ANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQH-LMRA  154 (249)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHH-HHHH
Confidence            22334457778999999999999999999999999999999999999999999999985   5667899999998 9999


Q ss_pred             HHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcCCc
Q 015014          230 LGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSE  309 (414)
Q Consensus       230 l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~  309 (414)
                      |++||+.++ |+||+++|||+++||++++++.+.++++                                          
T Consensus       155 l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~------------------------------------------  191 (249)
T PRK07938        155 LFFTAATIT-AAELHHFGSVEEVVPRDQLDEAALEVAR------------------------------------------  191 (249)
T ss_pred             HHHhCCcCC-HHHHHHCCCccEEeCHHHHHHHHHHHHH------------------------------------------
Confidence            999999999 9999999999999998887655444433                                          


Q ss_pred             ccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHhCC
Q 015014          310 KSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSL  389 (414)
Q Consensus       310 ~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~  389 (414)
                                                    +|++.||.+++.+|+.++...         ..++++.++.|.......+.
T Consensus       192 ------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~~~~~  232 (249)
T PRK07938        192 ------------------------------KIAAKDTRVIRAAKEALNGID---------PQDVERSYRWEQGFTFELNL  232 (249)
T ss_pred             ------------------------------HHHhCCHHHHHHHHHHHHhhc---------cCCHHHHHHHHHHHHHHHhc
Confidence                                          489999999999999999765         56789999999999988999


Q ss_pred             CchHHHHHHhhHhCCCCCC
Q 015014          390 RSDFAEGVRAVLVDKDQVL  408 (414)
Q Consensus       390 ~~D~~eGv~afl~dk~~~P  408 (414)
                      ++|++||+++|+  ++|+|
T Consensus       233 ~~d~~eg~~af~--ekr~p  249 (249)
T PRK07938        233 AGVSDEHRDAFV--EKRKA  249 (249)
T ss_pred             CccHHHHHHHHH--hcCCC
Confidence            999999999999  55665

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-50  Score=387.37  Aligned_cols=243  Identities=20%  Similarity=0.259  Sum_probs=213.9

Q ss_pred             cEEEEEecC---cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           67 FVKGNVHPN---GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        67 ~v~~~~~~~---~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      .|.++. ++   +|++|+||||++.|+||.+|+++|.++++.+++|+++|+|||+|.| ++||+|+|++++....  . .
T Consensus         4 ~i~~~~-~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~--~-~   78 (251)
T PRK06023          4 HILVER-PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTE-GCFSAGNDMQDFLAAA--M-G   78 (251)
T ss_pred             eEEEEe-ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcCHHHHhhcc--c-c
Confidence            477776 44   5999999999999999999999999999999999999999999987 8999999999875421  0 1


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      .   ..+.....+++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.
T Consensus        79 ~---~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~  155 (251)
T PRK06023         79 G---TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGH  155 (251)
T ss_pred             c---hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhH
Confidence            1   1123334567778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . +++++++||+.++ |+||+++|||+++||++++.+.+.+++                                     
T Consensus       156 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a-------------------------------------  196 (251)
T PRK06023        156 Q-RAFALLALGEGFS-AEAAQEAGLIWKIVDEEAVEAETLKAA-------------------------------------  196 (251)
T ss_pred             H-HHHHHHHhCCCCC-HHHHHHcCCcceeeCHHHHHHHHHHHH-------------------------------------
Confidence            8 9999999999999 999999999999999887765444443                                     


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                         ++|++.||.+++.+|++++...          ..+.+.++.|.+.
T Consensus       197 -----------------------------------~~l~~~~~~a~~~~K~~l~~~~----------~~l~~~~~~e~~~  231 (251)
T PRK06023        197 -----------------------------------EELAAKPPQALQIARDLMRGPR----------EDILARIDEEAKH  231 (251)
T ss_pred             -----------------------------------HHHHhCCHHHHHHHHHHHHhch----------hhHHHHHHHHHHH
Confidence                                               3599999999999999998643          3588899999998


Q ss_pred             HHHhCCCchHHHHHHhhH
Q 015014          384 ALRSSLRSDFAEGVRAVL  401 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl  401 (414)
                      +...+.++|++||+++|+
T Consensus       232 ~~~~~~~~~~~e~~~af~  249 (251)
T PRK06023        232 FAARLKSAEARAAFEAFM  249 (251)
T ss_pred             HHHHhCCHHHHHHHHHHh
Confidence            888999999999999998

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-50  Score=384.38  Aligned_cols=244  Identities=26%  Similarity=0.377  Sum_probs=213.2

Q ss_pred             EEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCch
Q 015014           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (414)
Q Consensus        68 v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (414)
                      |.++. +++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....        .
T Consensus         2 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~--------~   71 (248)
T PRK06072          2 IKVES-REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEFAPDF--------A   71 (248)
T ss_pred             eEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhhh--------H
Confidence            45665 789999999999999999999999999999999999999999999997 8999999999875311        1


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHH
Q 015014          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (414)
Q Consensus       148 ~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a  227 (414)
                      ..+....+.++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++| . ++
T Consensus        72 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g-~-~a  149 (248)
T PRK06072         72 IDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTG-Q-RF  149 (248)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhh-H-HH
Confidence            123334456777899999999999999999999999999999999999999999999999999999999999999 4 79


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcC
Q 015014          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS  307 (414)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~  307 (414)
                      +++++||++++ |+||+++|||+.+   +++.+.+.                                            
T Consensus       150 ~~lll~g~~~~-a~eA~~~Glv~~~---~~~~~~a~--------------------------------------------  181 (248)
T PRK06072        150 YEILVLGGEFT-AEEAERWGLLKIS---EDPLSDAE--------------------------------------------  181 (248)
T ss_pred             HHHHHhCCccC-HHHHHHCCCcccc---chHHHHHH--------------------------------------------
Confidence            99999999999 9999999999953   23433222                                            


Q ss_pred             CcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHh
Q 015014          308 SEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRS  387 (414)
Q Consensus       308 ~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~  387 (414)
                                                  +.+++|++.||.+++.+|+++++..         ..++++.++.|...+..+
T Consensus       182 ----------------------------~~a~~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~~~  224 (248)
T PRK06072        182 ----------------------------EMANRISNGPFQSYIAAKRMINLVL---------YNDLEEFLEYESAIQGYL  224 (248)
T ss_pred             ----------------------------HHHHHHHhCCHHHHHHHHHHHHHHh---------hcCHHHHHHHHHHHHHHH
Confidence                                        2334589999999999999999876         567999999999999999


Q ss_pred             CCCchHHHHHHhhHhCCCCCCCC
Q 015014          388 SLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       388 ~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +.++|++||+++|+  ++++|+|
T Consensus       225 ~~~~d~~eg~~af~--~kr~p~~  245 (248)
T PRK06072        225 GKTEDFKEGISSFK--EKREPKF  245 (248)
T ss_pred             hCChhHHHHHHHHh--cCCCCCC
Confidence            99999999999999  6777875

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=3.7e-50  Score=384.02  Aligned_cols=245  Identities=18%  Similarity=0.210  Sum_probs=209.3

Q ss_pred             EEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCch
Q 015014           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (414)
Q Consensus        68 v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (414)
                      |.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..        ...
T Consensus         3 v~~~~-~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g-~~FcaG~Dl~~~~~--------~~~   71 (251)
T TIGR03189         3 VWLER-DGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEG-PHFSFGASVAEHMP--------DQC   71 (251)
T ss_pred             EEEEe-eCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCC-CceecCcChhhhCc--------hhH
Confidence            56665 6889999999998 5999999999999999999999999999999998 89999999997531        011


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHH
Q 015014          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (414)
Q Consensus       148 ~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a  227 (414)
                      ..++.....++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+ |++++|++++|.. ++
T Consensus        72 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~-~a  149 (251)
T TIGR03189        72 AAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRV-AA  149 (251)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHH-HH
Confidence            223344456778899999999999999999999999999999999999999999999999987 4678999999998 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcC
Q 015014          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS  307 (414)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~  307 (414)
                      ++|++||++++ |+||+++|||++++|+.+  +.+.                                            
T Consensus       150 ~~l~ltg~~~~-a~eA~~~Glv~~v~~~~~--~~a~--------------------------------------------  182 (251)
T TIGR03189       150 EDLLYSGRSID-GAEGARIGLANAVAEDPE--NAAL--------------------------------------------  182 (251)
T ss_pred             HHHHHcCCCCC-HHHHHHCCCcceecCcHH--HHHH--------------------------------------------
Confidence            99999999999 999999999999997532  1111                                            


Q ss_pred             CcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHH-HHHHHHHHH
Q 015014          308 SEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVM-KYEYRVALR  386 (414)
Q Consensus       308 ~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l-~~e~~~~~~  386 (414)
                                              ++   .+++|++.||.+++.+|++++...         ..++++.+ ..|......
T Consensus       183 ------------------------~~---~a~~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~~e~~~~~~  226 (251)
T TIGR03189       183 ------------------------AW---FDEHPAKLSASSLRFAVRAARLGM---------NERVKAKIAEVEALYLEE  226 (251)
T ss_pred             ------------------------HH---HHHHHHhCCHHHHHHHHHHHHhhh---------cccHHHHHHHHHHHHHHH
Confidence                                    11   113589999999999999999765         55677776 477788888


Q ss_pred             hCCCchHHHHHHhhHhCCCCCCCC
Q 015014          387 SSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       387 ~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .+.++|++||+++|+  ++++|.|
T Consensus       227 ~~~s~d~~eg~~af~--ekr~p~~  248 (251)
T TIGR03189       227 LMATHDAVEGLNAFL--EKRPALW  248 (251)
T ss_pred             HhCCHhHHHHHHHHH--hcCCCCC
Confidence            999999999999999  6777776

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.6e-50  Score=393.89  Aligned_cols=260  Identities=18%  Similarity=0.155  Sum_probs=213.9

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHH-H---Hh
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV-A---EI  138 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~-~---~~  138 (414)
                      |.++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+||++.. .   ..
T Consensus         2 ~~~~~v~~~~-~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G-~~FcaG~Dl~~~~~~~~~~~   79 (298)
T PRK12478          2 PDFQTLLYTT-AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG-RAFSGGYDFGGGFQHWGEAM   79 (298)
T ss_pred             CCceEEEEec-cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCccccccccchhc
Confidence            3456688876 799999999999999999999999999999999999999999999998 8999999998621 1   00


Q ss_pred             hhCCCCCchHHH---HHH---HHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccC-CCCCCh
Q 015014          139 QKDRNTPLVPKV---FTA---EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI-GLFPDV  211 (414)
Q Consensus       139 ~~~~~~~~~~~~---~~~---~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~-Gl~P~~  211 (414)
                      ...........+   ...   ....+..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++|  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--  157 (298)
T PRK12478         80 MTDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--  157 (298)
T ss_pred             ccccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--
Confidence            000000011111   011   1234567889999999999999999999999999999999999999999997 8875  


Q ss_pred             hHHHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCC
Q 015014          212 GFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG  291 (414)
Q Consensus       212 g~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~  291 (414)
                      ++++ + +.+|.. ++++|++||++|+ |+||+++|||++|||++++++.+.++++                        
T Consensus       158 ~~~~-~-~~vG~~-~A~~llltg~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~a~------------------------  209 (298)
T PRK12478        158 TGMW-L-YRLSLA-KVKWHSLTGRPLT-GVQAAEAELINEAVPFERLEARVAEVAT------------------------  209 (298)
T ss_pred             hhHH-H-HHhhHH-HHHHHHHcCCccC-HHHHHHcCCcceecCHHHHHHHHHHHHH------------------------
Confidence            3333 2 458998 9999999999999 9999999999999999888765544443                        


Q ss_pred             cchhhhhHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccC
Q 015014          292 EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELS  371 (414)
Q Consensus       292 ~~~~~~~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~  371 (414)
                                                                      +|+.+||.+++.+|++++...        ...
T Consensus       210 ------------------------------------------------~la~~~p~a~~~~K~~l~~~~--------~~~  233 (298)
T PRK12478        210 ------------------------------------------------ELARIPLSQLQAQKLIVNQAY--------ENM  233 (298)
T ss_pred             ------------------------------------------------HHHhCCHHHHHHHHHHHHHHH--------Hhc
Confidence                                                            489999999999999999876        124


Q ss_pred             CHHHHHHHHHHHHHHhCCCchHH--------HHHHhhHhCCCCCCCCCc
Q 015014          372 KLSGVMKYEYRVALRSSLRSDFA--------EGVRAVLVDKDQVLSQLK  412 (414)
Q Consensus       372 ~l~~~l~~e~~~~~~~~~~~D~~--------eGv~afl~dk~~~P~~~~  412 (414)
                      ++++.++.|...+..++.++|++        |||+||+  ++|+|+|-+
T Consensus       234 ~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~--ekR~p~f~~  280 (298)
T PRK12478        234 GLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAV--ERRDGPFGD  280 (298)
T ss_pred             chhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHH--HhcCCcccc
Confidence            69999999999999999999997        5999999  777888754

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6e-50  Score=384.71  Aligned_cols=254  Identities=22%  Similarity=0.295  Sum_probs=218.2

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      +..+.++. +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++....  ....
T Consensus         5 ~~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~--~~~~   80 (260)
T PRK07827          5 DTLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTG-GTFCAGADLSEAGGGG--GDPY   80 (260)
T ss_pred             CcceEEEe-eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCcChHHHhhcc--cCch
Confidence            34577776 789999999999999999999999999999999999999999999997 8999999999875420  0111


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      .....++.....++..+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++++++++| .
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~-~  159 (260)
T PRK07827         81 DAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSP-R  159 (260)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhH-H
Confidence            111224445567788999999999999999999999999999999999999999999999999999999999999864 5


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       ++++|++||+.++ |+||+++|||+++++  ++++.+..+                                       
T Consensus       160 -~a~~l~l~g~~~~-a~eA~~~Glv~~v~~--~l~~~a~~~---------------------------------------  196 (260)
T PRK07827        160 -AAARYYLTGEKFG-AAEAARIGLVTAAAD--DVDAAVAAL---------------------------------------  196 (260)
T ss_pred             -HHHHHHHhCCccC-HHHHHHcCCcccchH--HHHHHHHHH---------------------------------------
Confidence             8999999999999 999999999999974  354433333                                       


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                                                       +++|++.||.+++.+|+++++..         ...+++.++.|...+
T Consensus       197 ---------------------------------a~~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~~~~~~  234 (260)
T PRK07827        197 ---------------------------------LADLRRGSPQGLAESKALTTAAV---------LAGFDRDAEELTEES  234 (260)
T ss_pred             ---------------------------------HHHHHhCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHHHH
Confidence                                             33589999999999999999876         567999999999999


Q ss_pred             HHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          385 LRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       385 ~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ...+.++|++||+++|+  ++++|+|
T Consensus       235 ~~~~~~~~~~~~~~af~--~kr~p~~  258 (260)
T PRK07827        235 ARLFVSDEAREGMTAFL--QKRPPRW  258 (260)
T ss_pred             HHHhcChhHHHHHHHHh--cCCCCCC
Confidence            99999999999999999  5666764

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-49  Score=377.79  Aligned_cols=239  Identities=18%  Similarity=0.277  Sum_probs=209.4

Q ss_pred             EEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCch
Q 015014           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (414)
Q Consensus        68 v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (414)
                      |.++. +++|++||||||+++|+||.+|+.+|.++++.++++ ++|+|||+|.| ++||+|+|+++...          .
T Consensus         2 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g-~~F~aG~Dl~~~~~----------~   68 (243)
T PRK07854          2 IGVTR-DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQG-TVFCAGADLSGDVY----------A   68 (243)
T ss_pred             ceEEE-eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCC-CceecccCCccchh----------H
Confidence            45665 789999999999999999999999999999999865 89999999997 89999999985211          1


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHH
Q 015014          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (414)
Q Consensus       148 ~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a  227 (414)
                      ..+......++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.+ ++
T Consensus        69 ~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~-~a  147 (243)
T PRK07854         69 DDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGG-RA  147 (243)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHH-HH
Confidence            12334445677789999999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcC
Q 015014          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS  307 (414)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~  307 (414)
                      ++|++||++++ |+||+++|||++|++   ++ .+.                                            
T Consensus       148 ~~l~ltg~~~~-a~eA~~~Glv~~v~~---~~-~a~--------------------------------------------  178 (243)
T PRK07854        148 RAMLLGAEKLT-AEQALATGMANRIGT---LA-DAQ--------------------------------------------  178 (243)
T ss_pred             HHHHHcCCCcC-HHHHHHCCCcccccC---HH-HHH--------------------------------------------
Confidence            99999999999 999999999999964   22 222                                            


Q ss_pred             CcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHh
Q 015014          308 SEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRS  387 (414)
Q Consensus       308 ~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~  387 (414)
                                              +|++    +|++.||.+++.+|+.++..           .++++.++.|...+..+
T Consensus       179 ------------------------~~a~----~l~~~~~~a~~~~K~~l~~~-----------~~~~~~~~~e~~~~~~~  219 (243)
T PRK07854        179 ------------------------AWAA----EIAGLAPLALQHAKRVLNDD-----------GAIEEAWPAHKELFDKA  219 (243)
T ss_pred             ------------------------HHHH----HHHhCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHHHH
Confidence                                    3333    58999999999999999863           35899999999999999


Q ss_pred             CCCchHHHHHHhhHhCCCCCCCC
Q 015014          388 SLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       388 ~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +.++|++||+++|+  ++++|.|
T Consensus       220 ~~~~d~~eg~~af~--~kr~p~~  240 (243)
T PRK07854        220 WASQDAIEAQVARI--EKRPPKF  240 (243)
T ss_pred             hcCchHHHHHHHHh--CCCCCCC
Confidence            99999999999999  6677775

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=1.2e-49  Score=390.13  Aligned_cols=261  Identities=19%  Similarity=0.176  Sum_probs=215.5

Q ss_pred             CccEEEEEe-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC------CCccCCCChhhHHHH
Q 015014           65 EEFVKGNVH-PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP------RAFCAGMDIKGVVAE  137 (414)
Q Consensus        65 ~~~v~~~~~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~------~~FcaG~Dl~~~~~~  137 (414)
                      +++|.++.. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+      ++||+|+|++++...
T Consensus        22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~  101 (302)
T PRK08321         22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD  101 (302)
T ss_pred             ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence            445777752 5789999999999999999999999999999999999999999999873      699999999976321


Q ss_pred             h---hhCCCCC--chHHH-HHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEc-CCeeEecccccCCCCCC
Q 015014          138 I---QKDRNTP--LVPKV-FTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-EKTLLAMPENGIGLFPD  210 (414)
Q Consensus       138 ~---~~~~~~~--~~~~~-~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~-~~a~f~~pe~~~Gl~P~  210 (414)
                      .   .......  ..... ......+...+..+||||||+|||+|+|||++|+++||||||+ ++++|++||+++|++|+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~  181 (302)
T PRK08321        102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG  181 (302)
T ss_pred             cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence            0   0000000  00001 1112245567889999999999999999999999999999999 69999999999999999


Q ss_pred             hhHHHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCC
Q 015014          211 VGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE  290 (414)
Q Consensus       211 ~g~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~  290 (414)
                      +|++++|+|++|.+ ++++|++||+.++ |+||+++|||+++||++++.+.+.++++                       
T Consensus       182 ~~~~~~L~r~vG~~-~A~~l~ltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~-----------------------  236 (302)
T PRK08321        182 GYGSAYLARQVGQK-FAREIFFLGRTYS-AEEAHDMGAVNAVVPHAELETEALEWAR-----------------------  236 (302)
T ss_pred             chHHHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHCCCceEeeCHHHHHHHHHHHHH-----------------------
Confidence            99999999999998 9999999999999 9999999999999998887665544433                       


Q ss_pred             CcchhhhhHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCccc
Q 015014          291 GEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNEL  370 (414)
Q Consensus       291 ~~~~~~~~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~  370 (414)
                                                                       +|++.||.+++.+|++++...         .
T Consensus       237 -------------------------------------------------~la~~~~~a~~~~K~~l~~~~---------~  258 (302)
T PRK08321        237 -------------------------------------------------EINGKSPTAMRMLKYAFNLTD---------D  258 (302)
T ss_pred             -------------------------------------------------HHHhCCHHHHHHHHHHHHhhh---------c
Confidence                                                             499999999999999998754         2


Q ss_pred             CCHHHHHHHHHHHHHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          371 SKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       371 ~~l~~~l~~e~~~~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                       .+.+....|.+.+..++.++|++|||.+|+  ++++|.|-
T Consensus       259 -~~~~~~~~e~~~~~~~~~~~d~~egi~af~--ekr~p~~~  296 (302)
T PRK08321        259 -GLVGQQLFAGEATRLAYMTDEAQEGRDAFL--EKRDPDWS  296 (302)
T ss_pred             -ccHHHHHHHHHHHHHHhcCHHHHHHHHHHh--ccCCCCCC
Confidence             234445568888888899999999999999  67778763

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.1e-49  Score=378.49  Aligned_cols=245  Identities=17%  Similarity=0.221  Sum_probs=217.6

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      -+..+.++. +++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.....   .
T Consensus         3 ~~~~~~~~~-~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~---~   77 (249)
T PRK07110          3 MKVVELREV-EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP-NYFATGGTQEGLLSLQT---G   77 (249)
T ss_pred             CCceEEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCcChHHHhhccc---h
Confidence            355677776 789999999999999999999999999999999999999999999997 89999999998754211   1


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                         .. .+.. ..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        78 ---~~-~~~~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~  152 (249)
T PRK07110         78 ---KG-TFTE-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGL  152 (249)
T ss_pred             ---hh-hHhh-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCH
Confidence               01 1222 467788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|++||++++ |+||+++|||++|+|++++.+.+.+++                                     
T Consensus       153 ~-~a~~llltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a-------------------------------------  193 (249)
T PRK07110        153 A-LGQEMLLTARYYR-GAELKKRGVPFPVLPRAEVLEKALELA-------------------------------------  193 (249)
T ss_pred             H-HHHHHHHcCCccC-HHHHHHcCCCeEEeChHHHHHHHHHHH-------------------------------------
Confidence            8 9999999999999 999999999999999887765444433                                     


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                         ++|++.||.+++.+|+.+++..         ...+.+.++.|...
T Consensus       194 -----------------------------------~~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~  229 (249)
T PRK07110        194 -----------------------------------RSLAEKPRHSLVLLKDHLVADR---------RRRLPEVIEQEVAM  229 (249)
T ss_pred             -----------------------------------HHHHhCCHHHHHHHHHHHHHhh---------hccHHHHHHHHHHH
Confidence                                               3599999999999999999876         56899999999999


Q ss_pred             HHHhCCCchHHHHHHhhH
Q 015014          384 ALRSSLRSDFAEGVRAVL  401 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl  401 (414)
                      +...+.++|++|||+++-
T Consensus       230 ~~~~~~~~~~~egi~~~~  247 (249)
T PRK07110        230 HEKTFHQPEVKRRIESLY  247 (249)
T ss_pred             HHHHhCCHhHHHHHHHhc
Confidence            999999999999999863

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.2e-49  Score=379.63  Aligned_cols=252  Identities=16%  Similarity=0.181  Sum_probs=213.2

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      .|+.+.++. +++|++|+||||++.|++|.+|+.+|.++++.++  +++++|||+|.| ++||+|+|++++.....   .
T Consensus         2 ~~~~i~~~~-~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g-~~FsaG~Dl~~~~~~~~---~   74 (255)
T PRK07112          2 DYQTIRVRQ-QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLP-EVFCFGADFSAIAEKPD---A   74 (255)
T ss_pred             CCceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCC-CCcccCcCHHHHhhccc---c
Confidence            456788886 7899999999999999999999999999999998  369999999987 89999999998754211   0


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      ...........+.++.++.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++| +.+|++++|.
T Consensus        75 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~  153 (255)
T PRK07112         75 GRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGT  153 (255)
T ss_pred             chhhhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCH
Confidence            111111123335677789999999999999999999999999999999999999999999999999865 5679999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|++||+.++ |+||+++||||++||+++.  .+.                                        
T Consensus       154 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~~--~~~----------------------------------------  189 (255)
T PRK07112        154 Q-KAHYMTLMTQPVT-AQQAFSWGLVDAYGANSDT--LLR----------------------------------------  189 (255)
T ss_pred             H-HHHHHHHhCCccc-HHHHHHcCCCceecCcHHH--HHH----------------------------------------
Confidence            8 9999999999999 9999999999999986542  111                                        


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                  ++    +++|++.||.+++.+|+.++...          ..+.+.++.|.+.
T Consensus       190 ----------------------------~~----a~~l~~~~p~a~~~~K~~~~~~~----------~~~~~~~~~e~~~  227 (255)
T PRK07112        190 ----------------------------KH----LLRLRCLNKAAVARYKSYASTLD----------DTVAAARPAALAA  227 (255)
T ss_pred             ----------------------------HH----HHHHHhCCHHHHHHHHHHHHHhh----------hhHHHHHHHHHHH
Confidence                                        22    23699999999999999998643          3588999999999


Q ss_pred             HHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          384 ALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      ...++.++|++||+.+|+  ++++|.|-
T Consensus       228 ~~~~~~~~~~~eg~~af~--~kr~p~~~  253 (255)
T PRK07112        228 NIEMFADPENLRKIARYV--ETGKFPWE  253 (255)
T ss_pred             HHHHHcChHHHHHHHHHH--cCCCCCCC
Confidence            999999999999999999  66777663

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=3e-50  Score=383.53  Aligned_cols=242  Identities=31%  Similarity=0.474  Sum_probs=221.2

Q ss_pred             EEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHH
Q 015014           70 GNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPK  149 (414)
Q Consensus        70 ~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~  149 (414)
                      |+. +|+|++|+||||++.|++|.+|+.+|.++++.++.|+++++||++|.| ++||+|+|++++....     ......
T Consensus         2 ~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~-~~F~~G~Dl~~~~~~~-----~~~~~~   74 (245)
T PF00378_consen    2 YEI-EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGG-KAFCAGADLKEFLNSD-----EEEARE   74 (245)
T ss_dssp             EEE-ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEEST-SESBESB-HHHHHHHH-----HHHHHH
T ss_pred             EEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecc-cccccccchhhhhccc-----cccccc
Confidence            565 799999999999889999999999999999999999999999999876 8999999999988751     223345


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHH
Q 015014          150 VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY  229 (414)
Q Consensus       150 ~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~  229 (414)
                      +....+.++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|.. ++++
T Consensus        75 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-~a~~  153 (245)
T PF00378_consen   75 FFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPS-RARE  153 (245)
T ss_dssp             HHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHH-HHHH
T ss_pred             cchhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecc-cccc
Confidence            777778899999999999999999999999999999999999999999999999999999999999999999997 9999


Q ss_pred             HHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcCCc
Q 015014          230 LGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSE  309 (414)
Q Consensus       230 l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~  309 (414)
                      +++||++++ |+||+++||||+++|++++.+.+..++                                           
T Consensus       154 l~l~g~~~~-a~eA~~~Glv~~v~~~~~l~~~a~~~a-------------------------------------------  189 (245)
T PF00378_consen  154 LLLTGEPIS-AEEALELGLVDEVVPDEELDEEALELA-------------------------------------------  189 (245)
T ss_dssp             HHHHTCEEE-HHHHHHTTSSSEEESGGGHHHHHHHHH-------------------------------------------
T ss_pred             cccccccch-hHHHHhhcceeEEcCchhhhHHHHHHH-------------------------------------------
Confidence            999999999 999999999999999988765554443                                           


Q ss_pred             ccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHhCC
Q 015014          310 KSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSL  389 (414)
Q Consensus       310 ~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~  389 (414)
                                                   ++|++.||.+++.+|+.+++..         ...+.+.++.|.+.+..++.
T Consensus       190 -----------------------------~~l~~~~~~a~~~~K~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  231 (245)
T PF00378_consen  190 -----------------------------KRLAAKPPSALRATKKALNRAL---------EQSLEEALEFEQDLFAECFK  231 (245)
T ss_dssp             -----------------------------HHHHTSCHHHHHHHHHHHHHHH---------HSHHHHHHHHHHHHHHHHHT
T ss_pred             -----------------------------HHHhcCCHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHHHHHcC
Confidence                                         3599999999999999999976         56799999999999999999


Q ss_pred             CchHHHHHHhhH
Q 015014          390 RSDFAEGVRAVL  401 (414)
Q Consensus       390 ~~D~~eGv~afl  401 (414)
                      ++|++|||++|+
T Consensus       232 ~~~~~e~~~~f~  243 (245)
T PF00378_consen  232 SEDFQEGIAAFL  243 (245)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHh
Confidence            999999999999

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.3e-49  Score=376.30  Aligned_cols=236  Identities=23%  Similarity=0.305  Sum_probs=208.7

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      |+++++.++. +++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....    
T Consensus         1 ~~~~~v~~~~-~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~----   74 (258)
T PRK06190          1 MTEPILLVET-HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGAD-PAFCAGLDLKELGGDG----   74 (258)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhccc----
Confidence            4567888886 799999999999999999999999999999999999999999999997 8999999999875411    


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                       ... . .......++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|
T Consensus        75 -~~~-~-~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG  151 (258)
T PRK06190         75 -SAY-G-AQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVG  151 (258)
T ss_pred             -chh-h-HHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhC
Confidence             111 1 1123346777899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||++++ |+||+++||||+++|++++.+.+.+++                                    
T Consensus       152 ~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a------------------------------------  193 (258)
T PRK06190        152 IG-RARRMSLTGDFLD-AADALRAGLVTEVVPHDELLPRARRLA------------------------------------  193 (258)
T ss_pred             HH-HHHHHHHhCCccC-HHHHHHcCCCeEecCHhHHHHHHHHHH------------------------------------
Confidence            98 9999999999999 999999999999999888765444433                                    


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                                                          ++|+++||.+++.+|++++...         ..++++.++.|..
T Consensus       194 ------------------------------------~~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~  228 (258)
T PRK06190        194 ------------------------------------ASIAGNNPAAVRALKASYDDGA---------AAQTGDALALEAE  228 (258)
T ss_pred             ------------------------------------HHHHcCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHH
Confidence                                                3489999999999999999876         5689999999999


Q ss_pred             HHHHhCCC
Q 015014          383 VALRSSLR  390 (414)
Q Consensus       383 ~~~~~~~~  390 (414)
                      .+...+.+
T Consensus       229 ~~~~~~~s  236 (258)
T PRK06190        229 AARAHNRS  236 (258)
T ss_pred             HHHHHHcC
Confidence            99888776

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=6.7e-47  Score=393.02  Aligned_cols=255  Identities=13%  Similarity=0.039  Sum_probs=218.6

Q ss_pred             CccEEEEE-ecCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCCCCC-ccCC
Q 015014           65 EEFVKGNV-HPNGVAVITLDRPKAL-------------NAMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRA-FCAG  128 (414)
Q Consensus        65 ~~~v~~~~-~~~~V~~Itlnrp~~~-------------Nal~~~m~~eL~~~l~~~~-~d~~v~~vVl~g~g~~~-FcaG  128 (414)
                      |.+|.+.. ++++|++||||||+++             |+|+.+|+.+|.+++..++ +|+++|+|||||.| +. ||+|
T Consensus       255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G-~~~F~aG  333 (546)
T TIGR03222       255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQG-DAELVLA  333 (546)
T ss_pred             eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCC-CCceecC
Confidence            45555543 3688999999999999             9999999999999999998 46999999999987 66 9999


Q ss_pred             CChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEEEEE-CCccccch-hhhhccCCeEEE-------cCCeeEe
Q 015014          129 MDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLM-DGVTMGFG-IGISGHGRYRIV-------TEKTLLA  199 (414)
Q Consensus       129 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav-nG~a~GgG-~~Lala~D~ria-------~~~a~f~  199 (414)
                      +|++.+..    . +.......+.....++.+|..+|||+||+| ||+|+||| ++|+++||+||+       +++++|+
T Consensus       334 ~Dl~~~~~----~-~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~  408 (546)
T TIGR03222       334 ADALLEAH----K-DHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAIT  408 (546)
T ss_pred             cCcccccc----c-cchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEe
Confidence            99983211    0 111112222233447778999999999999 89999999 999999999999       8999999


Q ss_pred             cccccCCCCCChhHHHHHhhCC-CcHHHH--HHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHH
Q 015014          200 MPENGIGLFPDVGFSYIAAKGP-GGGSVG--AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQ  276 (414)
Q Consensus       200 ~pe~~~Gl~P~~g~~~~L~r~~-G~~~~a--~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~  276 (414)
                      +||+++|++|++|++++|++++ |.+ ++  ++|++||+.|+ |+||+++|||++++|++++.+.+.++++         
T Consensus       409 ~~e~~lGl~p~~gg~~~L~~~v~G~~-~a~~~~~~ltg~~i~-A~eA~~~Glv~~vv~~~~l~~~a~~~a~---------  477 (546)
T TIGR03222       409 LSELNFGLYPMVNGLSRLATRFYAEP-APVAAVRDKIGQALD-AEEAERLGLVTAAPDDIDWEDEIRIALE---------  477 (546)
T ss_pred             CCccccccCCCcCcHHHHHHHhcCch-hHHHHHHHHhCCCCC-HHHHHHcCCcccccCchHHHHHHHHHHH---------
Confidence            9999999999999999999998 987 88  55999999999 9999999999999999888665544433         


Q ss_pred             HHHHHHHhhcCCCCCcchhhhhHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHH
Q 015014          277 DIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYF  356 (414)
Q Consensus       277 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l  356 (414)
                                                                                     +|+++||.+++.+|+++
T Consensus       478 ---------------------------------------------------------------~la~~~p~a~~~~K~~l  494 (546)
T TIGR03222       478 ---------------------------------------------------------------ERASFSPDALTGLEANL  494 (546)
T ss_pred             ---------------------------------------------------------------HHHhcCHHHHHHHHHHH
Confidence                                                                           49999999999999999


Q ss_pred             HHHHhhcCCCCcccCCHHHH-HHHHHHHHHHhCCCchHHH---HHHhhHhCCCCCCCC
Q 015014          357 SKVASAHGKTDNELSKLSGV-MKYEYRVALRSSLRSDFAE---GVRAVLVDKDQVLSQ  410 (414)
Q Consensus       357 ~~~~~~~~~~~~~~~~l~~~-l~~e~~~~~~~~~~~D~~e---Gv~afl~dk~~~P~~  410 (414)
                      +...         ..++++. +..|...+..++.++|.+|   ||++|+  ++|+|+|
T Consensus       495 ~~~~---------~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~--ekr~p~f  541 (546)
T TIGR03222       495 RFAG---------PETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYG--SGKKAQF  541 (546)
T ss_pred             hhcC---------CcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHc--cCCCCCC
Confidence            9876         6789999 9999999999999999999   999999  7788875

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=8.5e-47  Score=393.46  Aligned_cols=258  Identities=12%  Similarity=0.030  Sum_probs=220.9

Q ss_pred             CCccEEEEEe-cCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCCCCCccCC
Q 015014           64 AEEFVKGNVH-PNGVAVITLDRPKAL-------------NAMNLDMDIKYKSFLDEWES-DPRVKCVLIEGSGPRAFCAG  128 (414)
Q Consensus        64 ~~~~v~~~~~-~~~V~~Itlnrp~~~-------------Nal~~~m~~eL~~~l~~~~~-d~~v~~vVl~g~g~~~FcaG  128 (414)
                      .|+++.++.. +++|++||||||+++             |+||.+|+.+|.++++.++. |+++|+|||||.|+++||+|
T Consensus       258 ~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG  337 (550)
T PRK08184        258 RYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLA  337 (550)
T ss_pred             eeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeC
Confidence            3555666553 578999999999988             68999999999999999986 79999999999873499999


Q ss_pred             CChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEEEEEC-Cccccch-hhhhccCCeEEEc-------CCeeEe
Q 015014          129 MDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD-GVTMGFG-IGISGHGRYRIVT-------EKTLLA  199 (414)
Q Consensus       129 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavn-G~a~GgG-~~Lala~D~ria~-------~~a~f~  199 (414)
                      +|++.+..    . +.............++.+|..+||||||+|| |+|+||| ++|+++||+|||+       ++++|+
T Consensus       338 ~Dl~~~~~----~-~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~  412 (550)
T PRK08184        338 ADATLLAH----K-DHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAIT  412 (550)
T ss_pred             CChhhhcc----c-chHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEE
Confidence            99873211    0 1101112233334567789999999999997 9999999 9999999999999       999999


Q ss_pred             cccccCCCCCChhHHHHHhhC-CCcHHHHHHH--HhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHH
Q 015014          200 MPENGIGLFPDVGFSYIAAKG-PGGGSVGAYL--GMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQ  276 (414)
Q Consensus       200 ~pe~~~Gl~P~~g~~~~L~r~-~G~~~~a~~l--~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~  276 (414)
                      +||+++|++|++|++++|+|+ +|.+ +++++  ++||+.|+ |+||+++|||+++||++++++.+.++++         
T Consensus       413 ~pe~~~Gl~p~~gg~~~L~r~~vG~~-~A~~~~l~~tg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~---------  481 (550)
T PRK08184        413 LSALNFGLYPMVNGLSRLARRFYGEP-DPLAAVRAKIGQPLD-ADAAEELGLVTAAPDDIDWEDEVRIALE---------  481 (550)
T ss_pred             CccccccCCCCCCcHHHhHHHhcChH-HHHHHHHHHhCCcCC-HHHHHHcCCcccccChHHHHHHHHHHHH---------
Confidence            999999999999999999988 7998 99997  59999999 9999999999999999888765555443         


Q ss_pred             HHHHHHHhhcCCCCCcchhhhhHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHH
Q 015014          277 DIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYF  356 (414)
Q Consensus       277 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l  356 (414)
                                                                                     +|+++||.+++.+|+++
T Consensus       482 ---------------------------------------------------------------~ia~~~p~a~~~~K~~l  498 (550)
T PRK08184        482 ---------------------------------------------------------------ERASLSPDALTGMEANL  498 (550)
T ss_pred             ---------------------------------------------------------------HHHhCCHHHHHHHHHHH
Confidence                                                                           49999999999999999


Q ss_pred             HHHHhhcCCCCcccCCHHHH-HHHHHHHHHHhCCCchHHH---HHHhhHhCCCCCCCCC
Q 015014          357 SKVASAHGKTDNELSKLSGV-MKYEYRVALRSSLRSDFAE---GVRAVLVDKDQVLSQL  411 (414)
Q Consensus       357 ~~~~~~~~~~~~~~~~l~~~-l~~e~~~~~~~~~~~D~~e---Gv~afl~dk~~~P~~~  411 (414)
                      +...         ..+++++ +..|...+..++.++|.+|   |+++|+  ++|+|+|-
T Consensus       499 ~~~~---------~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~--ekr~~~f~  546 (550)
T PRK08184        499 RFAG---------PETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYG--TGQKAQFD  546 (550)
T ss_pred             HhcC---------CCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhc--cCCCCCCC
Confidence            9876         6789999 9999999999999999999   999999  88889873

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-46  Score=365.24  Aligned_cols=244  Identities=20%  Similarity=0.294  Sum_probs=203.6

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      |+++.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++........
T Consensus         1 ~~~~~v~~~~-~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G-~~FcaG~Dl~~~~~~~~~~~   78 (288)
T PRK08290          1 MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAG-KHFSAGHDLGSGTPGRDRDP   78 (288)
T ss_pred             CCCceEEEEe-eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CccccCCCcccccccccccc
Confidence            4567788886 789999999999999999999999999999999999999999999997 89999999998642111000


Q ss_pred             --------------CCC---chHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccC
Q 015014          143 --------------NTP---LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI  205 (414)
Q Consensus       143 --------------~~~---~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~  205 (414)
                                    ...   ...........++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l  158 (288)
T PRK08290         79 GPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM  158 (288)
T ss_pred             ccccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence                          000   011112233456678899999999999999999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhh
Q 015014          206 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY  285 (414)
Q Consensus       206 Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~  285 (414)
                      |+ |+ ++++++++++|.. ++++|++||+.|+ |+||+++|||+++||++++++.+.++++                  
T Consensus       159 Gl-~~-~~~~~l~~~iG~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~a~------------------  216 (288)
T PRK08290        159 GI-PG-VEYFAHPWELGPR-KAKELLFTGDRLT-ADEAHRLGMVNRVVPRDELEAETLELAR------------------  216 (288)
T ss_pred             Cc-Cc-chHHHHHHHhhHH-HHHHHHHcCCCCC-HHHHHHCCCccEeeCHHHHHHHHHHHHH------------------
Confidence            98 54 4567789999998 9999999999999 9999999999999998877655444433                  


Q ss_pred             cCCCCCcchhhhhHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCC
Q 015014          286 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK  365 (414)
Q Consensus       286 ~~~~~~~~~~~~~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~  365 (414)
                                                                            +|++.||.+++.+|+.+++..     
T Consensus       217 ------------------------------------------------------~la~~~~~a~~~~K~~~~~~~-----  237 (288)
T PRK08290        217 ------------------------------------------------------RIAAMPPFGLRLTKRAVNQTL-----  237 (288)
T ss_pred             ------------------------------------------------------HHHhCCHHHHHHHHHHHHHHH-----
Confidence                                                                  499999999999999999876     


Q ss_pred             CCcccCCHHHHHHHHHHHHHHhC-CCch
Q 015014          366 TDNELSKLSGVMKYEYRVALRSS-LRSD  392 (414)
Q Consensus       366 ~~~~~~~l~~~l~~e~~~~~~~~-~~~D  392 (414)
                         ...+++++++.|.......+ ++++
T Consensus       238 ---~~~~~~~~~~~~~~~~~~~~~~~~~  262 (288)
T PRK08290        238 ---DAQGFRAALDAVFDLHQLGHAHNAE  262 (288)
T ss_pred             ---hhccHHHHHHHHHHHHHHccccchh
Confidence               13369999999999998877 5555

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.7e-46  Score=352.34  Aligned_cols=193  Identities=20%  Similarity=0.259  Sum_probs=167.6

Q ss_pred             CccEEEEEe----cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhh
Q 015014           65 EEFVKGNVH----PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQK  140 (414)
Q Consensus        65 ~~~v~~~~~----~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~  140 (414)
                      +++|.++..    +++|++|+||||++ |+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....  
T Consensus         2 ~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~--   77 (222)
T PRK05869          2 NEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGH-EIFSAGDDMPELRTLS--   77 (222)
T ss_pred             ccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcCcCcCHHHHhccC--
Confidence            345555542    58999999999986 999999999999999999999999999999987 8999999999875421  


Q ss_pred             CCCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhC
Q 015014          141 DRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG  220 (414)
Q Consensus       141 ~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~  220 (414)
                         ............+++.++.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+++
T Consensus        78 ---~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~  154 (222)
T PRK05869         78 ---AQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRA  154 (222)
T ss_pred             ---hhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHH
Confidence               11112233344567889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHH
Q 015014          221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALL  266 (414)
Q Consensus       221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~  266 (414)
                      +|.. +++++++||++++ |+||+++|||++++|++++.+.+.+++
T Consensus       155 ig~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a  198 (222)
T PRK05869        155 AGPS-RAKELVFSGRFFD-AEEALALGLIDEMVAPDDVYDAAAAWA  198 (222)
T ss_pred             hCHH-HHHHHHHcCCCcC-HHHHHHCCCCCEeeCchHHHHHHHHHH
Confidence            9997 9999999999999 999999999999999888765544443

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.7e-45  Score=397.40  Aligned_cols=289  Identities=19%  Similarity=0.233  Sum_probs=226.1

Q ss_pred             cEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCc
Q 015014           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (414)
Q Consensus        67 ~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (414)
                      .+.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|+| ++||+|+|++++.....  .....
T Consensus         7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~--~~~~~   83 (715)
T PRK11730          7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAK-DAFIVGADITEFLSLFA--APEEE   83 (715)
T ss_pred             eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCC-CccccCcCHHHHhhhcc--CCHHH
Confidence            4666644789999999999999999999999999999999999999999999998 89999999998754210  01111


Q ss_pred             hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHH
Q 015014          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~  226 (414)
                      ...+......++.++..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|.. +
T Consensus        84 ~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~-~  162 (715)
T PRK11730         84 LSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGAD-N  162 (715)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHH-H
Confidence            223444556678889999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhc
Q 015014          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF  306 (414)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F  306 (414)
                      +++|++||++++ |+||+++||||++||++++.+.+.++++........        ......+...+...  ..+++++
T Consensus       163 A~~llltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~--------~~~~~~~~~~p~a~--~~~~~~~  231 (715)
T PRK11730        163 ALEWIAAGKDVR-AEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLD--------WKARRQPKLEPLKL--SKIEAMM  231 (715)
T ss_pred             HHHHHHcCCcCC-HHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCc--------cccccCcccccccc--cchhHHH
Confidence            999999999999 999999999999999999988888887653211000        00000000000000  0011111


Q ss_pred             CCcccHHHHHHHHHhccCccccchHHHHHHHH-HHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHH
Q 015014          307 SSEKSVRQIIEELKKHQSSAETSVAQWADEAL-QGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL  385 (414)
Q Consensus       307 ~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~-~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~  385 (414)
                      .                       ...+++.+ ++..+..|.++ .++++++.+.         ..+++++++.|.+.+.
T Consensus       232 ~-----------------------~~~~k~~~~~~~~~~~pa~~-~~~~~i~~~~---------~~~~~~~l~~E~~~~~  278 (715)
T PRK11730        232 S-----------------------FTTAKGMVAQKAGKHYPAPM-TAVKTIEAAA---------GLGRDEALELEAKGFV  278 (715)
T ss_pred             H-----------------------HHHHHHHHHHhhccCCccHH-HHHHHHHHHh---------cCCHHHHHHHHHHHHH
Confidence            1                       12333322 34556677776 7777888876         5689999999999999


Q ss_pred             HhCCCchHHHHHHhhHhC
Q 015014          386 RSSLRSDFAEGVRAVLVD  403 (414)
Q Consensus       386 ~~~~~~D~~eGv~afl~d  403 (414)
                      .++.++|++||+++|+.+
T Consensus       279 ~~~~s~d~~egi~aF~~~  296 (715)
T PRK11730        279 KLAKTNVARALVGIFLND  296 (715)
T ss_pred             HHhCCHHHHHHHHHHHHH
Confidence            999999999999999965

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.8e-45  Score=354.47  Aligned_cols=254  Identities=14%  Similarity=0.085  Sum_probs=201.6

Q ss_pred             CCCccEEEEE-ecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEeCCCCCccCCCChhhHHH
Q 015014           63 GAEEFVKGNV-HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWES-----DPRVKCVLIEGSGPRAFCAGMDIKGVVA  136 (414)
Q Consensus        63 ~~~~~v~~~~-~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~-----d~~v~~vVl~g~g~~~FcaG~Dl~~~~~  136 (414)
                      ..+.++++.. .+++|++|+|| |+++|+||.+|+.+|.++++++++     |+++++|||+|.++++||+|+|++++..
T Consensus        12 ~~~~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~   90 (287)
T PRK08788         12 GELSQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAE   90 (287)
T ss_pred             cccCceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhh
Confidence            4555555544 26889999996 999999999999999999999998     8999999999994489999999998753


Q ss_pred             HhhhCCCCCchHHHHHHHHHHHHHHh---hCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhH
Q 015014          137 EIQKDRNTPLVPKVFTAEYSLICKIS---EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF  213 (414)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~  213 (414)
                      ... .........+....+..+..+.   .+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+
T Consensus        91 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~  169 (287)
T PRK08788         91 LIR-AGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGA  169 (287)
T ss_pred             hcc-ccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchH
Confidence            111 1111111112222233333333   799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcc
Q 015014          214 SYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEA  293 (414)
Q Consensus       214 ~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  293 (414)
                      +++|++++|.. ++++|++||+.++ |+||+++||||+++|++++.+.+.++++                          
T Consensus       170 ~~~l~~~vG~~-~A~ellltG~~l~-A~eA~~~GLV~~vv~~~el~~~a~~~a~--------------------------  221 (287)
T PRK08788        170 YSFLARRVGPK-LAEELILSGKLYT-AEELHDMGLVDVLVEDGQGEAAVRTFIR--------------------------  221 (287)
T ss_pred             HHHHHHHhhHH-HHHHHHHcCCCCC-HHHHHHCCCCcEecCchHHHHHHHHHHH--------------------------
Confidence            99999999998 9999999999999 9999999999999999887654444332                          


Q ss_pred             hhhhhHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCH
Q 015014          294 PLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKL  373 (414)
Q Consensus       294 ~~~~~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l  373 (414)
                                                                    +|++. |.+...+|+..+...         ..++
T Consensus       222 ----------------------------------------------~ia~~-~~~~~a~k~~~~~~~---------~~~~  245 (287)
T PRK08788        222 ----------------------------------------------KSKRK-LNGWRAMLRARRRVN---------PLSL  245 (287)
T ss_pred             ----------------------------------------------HHhcC-ccHHHHHHHHHHhhc---------cCCH
Confidence                                                          47776 777777777777654         4578


Q ss_pred             HHHHHHHHHHHHHhCC-CchHHHHHHhhHh
Q 015014          374 SGVMKYEYRVALRSSL-RSDFAEGVRAVLV  402 (414)
Q Consensus       374 ~~~l~~e~~~~~~~~~-~~D~~eGv~afl~  402 (414)
                      ++.++.|......++. .+.-++-|..|..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (287)
T PRK08788        246 EELMDITEIWVDAALQLEEKDLRTMERLVR  275 (287)
T ss_pred             HHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence            9999988777765443 5556677777773

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=2.9e-46  Score=336.65  Aligned_cols=266  Identities=21%  Similarity=0.309  Sum_probs=225.6

Q ss_pred             CCccEEEE--EecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhh-
Q 015014           64 AEEFVKGN--VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQK-  140 (414)
Q Consensus        64 ~~~~v~~~--~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~-  140 (414)
                      +|+.+.+.  ..++.|.++.||||.|+|+||..|+.|+.++++.+..||+||+|||.|+| ++||+|+|+..+...... 
T Consensus        17 s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~G-KhFcaGIDl~~~~~~~~~~   95 (292)
T KOG1681|consen   17 SYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAG-KHFCAGIDLNDMASDRILQ   95 (292)
T ss_pred             ccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCC-cceecccCcchhhhhhccc
Confidence            46655554  34567999999999999999999999999999999999999999999998 999999998877653211 


Q ss_pred             CCCC------CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHH
Q 015014          141 DRNT------PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS  214 (414)
Q Consensus       141 ~~~~------~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~  214 (414)
                      ....      ..++++...+++.+..|.+||||||++|||+|+|||+.|..+||+|+|+++|.|+.-|+.+|+..+.|..
T Consensus        96 ~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL  175 (292)
T KOG1681|consen   96 PEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTL  175 (292)
T ss_pred             cccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhH
Confidence            1111      1234466666778899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCC-CHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcc
Q 015014          215 YIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG-NLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEA  293 (414)
Q Consensus       215 ~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~-~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  293 (414)
                      .+||+.+|.++.++++.+|++.|. |.||++.|||.+|+|+. ++...+..                             
T Consensus       176 ~RlpkvVGn~s~~~elafTar~f~-a~EAl~~GLvSrvf~dk~~ll~~~l~-----------------------------  225 (292)
T KOG1681|consen  176 NRLPKVVGNQSLARELAFTARKFS-ADEALDSGLVSRVFPDKEELLNGALP-----------------------------  225 (292)
T ss_pred             hhhhHHhcchHHHHHHHhhhhhcc-hhhhhhcCcchhhcCCHHHHHhhhHH-----------------------------
Confidence            999999996669999999999999 99999999999999973 33332222                             


Q ss_pred             hhhhhHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCH
Q 015014          294 PLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKL  373 (414)
Q Consensus       294 ~~~~~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l  373 (414)
                                                                 +++.|+.+||.++..||+.|.+.+         +.+.
T Consensus       226 -------------------------------------------mA~~Ia~KSpvaVqgTK~~L~ysr---------ehsv  253 (292)
T KOG1681|consen  226 -------------------------------------------MAELIASKSPVAVQGTKENLLYSR---------EHSV  253 (292)
T ss_pred             -------------------------------------------HHHHhccCCceeeechHHHHHHHh---------hhhh
Confidence                                                       223599999999999999999998         7889


Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHhhHhCCCCCCCCCcC
Q 015014          374 SGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQLKL  413 (414)
Q Consensus       374 ~~~l~~e~~~~~~~~~~~D~~eGv~afl~dk~~~P~~~~~  413 (414)
                      ++.+..-.-.-...+.++|+.+.+.|-+. |++++.|-||
T Consensus       254 ~~sLnyvatwNms~L~s~Dl~~av~a~m~-k~k~~tfskl  292 (292)
T KOG1681|consen  254 EESLNYVATWNMSMLLSDDLVKAVMAQME-KLKTVTFSKL  292 (292)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCcccC
Confidence            99988766666667789999999999995 5566667665

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=3e-46  Score=333.76  Aligned_cols=252  Identities=19%  Similarity=0.258  Sum_probs=226.4

Q ss_pred             ecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHH
Q 015014           73 HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFT  152 (414)
Q Consensus        73 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  152 (414)
                      .+.||.+|-+|||.+.|+|+.-|+++|.++++.+..|+.+|+|+|++.-++.||+|.||++-..+.     ++....|..
T Consensus        37 ~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms-----~~Ev~~fV~  111 (291)
T KOG1679|consen   37 KDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMS-----PSEVTRFVN  111 (291)
T ss_pred             CCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCC-----HHHHHHHHH
Confidence            356899999999999999999999999999999999999999999998899999999999977643     345566888


Q ss_pred             HHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHh
Q 015014          153 AEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM  232 (414)
Q Consensus       153 ~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~l  232 (414)
                      ....++..+.++|.|+||+|+|.|+|||++|+++||+|||+++++|+++|++++++|+.||+++|+|++|.. .++||++
T Consensus       112 ~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~a-laKELIf  190 (291)
T KOG1679|consen  112 GLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVA-LAKELIF  190 (291)
T ss_pred             HHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHH-HHHhHhh
Confidence            888899999999999999999999999999999999999999999999999999999999999999999997 9999999


Q ss_pred             cCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcCCcccH
Q 015014          233 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSV  312 (414)
Q Consensus       233 tG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~sv  312 (414)
                      |++.++ +.||...|||+++|...+-.+.+.                                                 
T Consensus       191 tarvl~-g~eA~~lGlVnhvv~qneegdaa~-------------------------------------------------  220 (291)
T KOG1679|consen  191 TARVLN-GAEAAKLGLVNHVVEQNEEGDAAY-------------------------------------------------  220 (291)
T ss_pred             hheecc-chhHHhcchHHHHHhcCccccHHH-------------------------------------------------
Confidence            999999 899999999999998654322111                                                 


Q ss_pred             HHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHhCCCch
Q 015014          313 RQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSD  392 (414)
Q Consensus       313 ~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D  392 (414)
                                         +-+.+.+++|.-+-|.+++++|..++.+.         ..++..++..|....+....+.|
T Consensus       221 -------------------~kal~lA~eilp~gPiavr~aKlAIn~G~---------evdiasgl~iEe~CYaq~i~t~d  272 (291)
T KOG1679|consen  221 -------------------QKALELAREILPQGPIAVRLAKLAINLGM---------EVDIASGLSIEEMCYAQIIPTKD  272 (291)
T ss_pred             -------------------HHHHHHHHHhccCCchhhhHHHHHhccCc---------eecccccccHHHHHHHhcCcHHH
Confidence                               22333444689999999999999999987         67888999999999999999999


Q ss_pred             HHHHHHhhHhCCCCCCCC
Q 015014          393 FAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       393 ~~eGv~afl~dk~~~P~~  410 (414)
                      .-||+.+|.  ++|+|.+
T Consensus       273 rLeglaaf~--ekr~p~y  288 (291)
T KOG1679|consen  273 RLEGLAAFK--EKRKPEY  288 (291)
T ss_pred             HHHHHHHHH--hhcCCCc
Confidence            999999999  7777865

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8e-45  Score=356.25  Aligned_cols=197  Identities=23%  Similarity=0.320  Sum_probs=165.2

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC-
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR-  142 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~-  142 (414)
                      .++.|.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++........ 
T Consensus         8 ~~~~v~~e~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G-~~FcaG~Dl~~~~~~~~~~~~   85 (302)
T PRK08272          8 NLKTMTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG-KGFCAGYDLSAYAEGSSSGGG   85 (302)
T ss_pred             CCCeEEEEe-ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCcCHHHHhhccccccc
Confidence            467788887 789999999999999999999999999999999999999999999998 89999999999864221000 


Q ss_pred             CC--------------CchH-----HHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccc
Q 015014          143 NT--------------PLVP-----KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN  203 (414)
Q Consensus       143 ~~--------------~~~~-----~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~  203 (414)
                      ..              ....     .++.....++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~  165 (302)
T PRK08272         86 GGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPT  165 (302)
T ss_pred             ccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcch
Confidence            00              0000     1234445677789999999999999999999999999999999999999999999


Q ss_pred             cCCCCCChhHHHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHH
Q 015014          204 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLA  267 (414)
Q Consensus       204 ~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~  267 (414)
                      ++|.+|+.+   .+++++|.+ ++++|+|||++|+ |+||+++|||+++||++++++.+.++++
T Consensus       166 ~~gg~~~~~---~~~~~vG~~-~A~~llltG~~i~-a~eA~~~GLv~~vv~~~~l~~~a~~la~  224 (302)
T PRK08272        166 RVWGVPATG---MWAYRLGPQ-RAKRLLFTGDCIT-GAQAAEWGLAVEAVPPEELDERTERLVE  224 (302)
T ss_pred             hcccCChHH---HHHHHhhHH-HHHHHHHcCCccC-HHHHHHcCCCceecCHHHHHHHHHHHHH
Confidence            986666432   567889998 9999999999999 9999999999999998887665544443

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3e-44  Score=339.00  Aligned_cols=223  Identities=22%  Similarity=0.206  Sum_probs=192.6

Q ss_pred             cEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCc
Q 015014           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (414)
Q Consensus        67 ~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (414)
                      .|.++. +++|++||||||+ .|++|.+|+.+|.++++.++  +++++|||+|.| ++||+|+|++++...      ...
T Consensus         4 ~i~~~~-~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g-~~F~~G~Dl~~~~~~------~~~   72 (229)
T PRK06213          4 LVSYTL-EDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQP-GIFSGGFDLKVMTSG------AQA   72 (229)
T ss_pred             eEEEEe-cCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCC-CceEcCcCHHHHhcc------hHh
Confidence            577776 7899999999985 69999999999999999988  457999999997 899999999987531      112


Q ss_pred             hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCC-eeEecccccCCCCCChhHHHHHhhCCCcHH
Q 015014          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~-a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~  225 (414)
                      ...++....+++.++.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|+.|+.+++++.+|.. 
T Consensus        73 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~-  151 (229)
T PRK06213         73 AIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPS-  151 (229)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHH-
Confidence            2334555567788999999999999999999999999999999999999 99999999999998888888899999987 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhh
Q 015014          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (414)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~  305 (414)
                      .+++|++||++++ |+||+++||||+++|++++.+.+.+++                                       
T Consensus       152 ~a~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a---------------------------------------  191 (229)
T PRK06213        152 AFQRAVINAEMFD-PEEAVAAGFLDEVVPPEQLLARAQAAA---------------------------------------  191 (229)
T ss_pred             HHHHHHHcCcccC-HHHHHHCCCceeccChHHHHHHHHHHH---------------------------------------
Confidence            9999999999999 999999999999999887765443333                                       


Q ss_pred             cCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       306 F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                       ++|++.||.+++.+|++++...         ...+.+.++.|.+.
T Consensus       192 ---------------------------------~~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~~~~~  227 (229)
T PRK06213        192 ---------------------------------RELAGLNMGAHAATKLKVRAAA---------LEAIRAAIEGDAAE  227 (229)
T ss_pred             ---------------------------------HHHhcCCHHHHHHHHHHHHHHH---------HHHHHhchhhhhhh
Confidence                                             3589999999999999999875         45678888777664

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.2e-43  Score=382.97  Aligned_cols=284  Identities=20%  Similarity=0.229  Sum_probs=223.2

Q ss_pred             EEEEEecCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCc
Q 015014           68 VKGNVHPNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (414)
Q Consensus        68 v~~~~~~~~V~~Itlnrp-~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (414)
                      +.++..+++|++|||||| ++.|+||.+|+.+|.++++.++.|+++|+|||+|.++++||+|+|++++....    ....
T Consensus         7 ~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~----~~~~   82 (708)
T PRK11154          7 FTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACK----TAQE   82 (708)
T ss_pred             EEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccC----CHHH
Confidence            455655789999999999 68999999999999999999999999999999997668999999999875311    1111


Q ss_pred             hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCC--eeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~--a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      ...+......++.+|.++||||||+|||+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..
T Consensus        83 ~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~  162 (708)
T PRK11154         83 AEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVS  162 (708)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHH
Confidence            2223344456788999999999999999999999999999999999996  48999999999999999999999999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       ++++|++||++++ |+||+++||||+++|++++.+.+.++++......+.......                    +  
T Consensus       163 -~A~~llltG~~i~-a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~--------------------~--  218 (708)
T PRK11154        163 -TALDMILTGKQLR-AKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVRER--------------------L--  218 (708)
T ss_pred             -HHHHHHHhCCcCC-HHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCcCCchhh--------------------h--
Confidence             9999999999999 999999999999999999988888887652100000000000                    0  


Q ss_pred             hcCCc-ccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          305 CFSSE-KSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       305 ~F~~~-~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                       ...+ ..-..+               .+.+.+.+.+-.++.-.++..+|++++.+.         ..+++++++.|.+.
T Consensus       219 -~~~~p~~~~~~---------------~~~~~~~~~~~~~g~~~A~~~~k~~i~~~~---------~~~~~~~l~~E~~~  273 (708)
T PRK11154        219 -LEGNPLGRALL---------------FKQARKKTLAKTQGNYPAPERILDVVRTGL---------EKGMSSGYEAEARA  273 (708)
T ss_pred             -cccCchhHHHH---------------HHHHHHHHHHhcccCChHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Confidence             0000 000000               122222222223334479999999999876         66899999999999


Q ss_pred             HHHhCCCchHHHHHHhhHhCC
Q 015014          384 ALRSSLRSDFAEGVRAVLVDK  404 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~dk  404 (414)
                      +..++.++|++||+.+|+.++
T Consensus       274 ~~~~~~s~~~~~~~~aF~~~~  294 (708)
T PRK11154        274 FGELAMTPESAALRSIFFATT  294 (708)
T ss_pred             HHHHhCCHHHHHHHHHHHHHH
Confidence            999999999999999999653

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=1.8e-43  Score=346.53  Aligned_cols=286  Identities=19%  Similarity=0.150  Sum_probs=209.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      +++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++......  .......+.....+
T Consensus        38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~--~~~~~~~~~~~~~~  115 (360)
T TIGR03200        38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAG--NPQEYRQYMRLFND  115 (360)
T ss_pred             EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhccc--ChhHHHHHHHHHHH
Confidence            5669999999999999999999999999999999999999999986799999999987652111  11122334444456


Q ss_pred             HHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCCC
Q 015014          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKR  236 (414)
Q Consensus       157 l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~~  236 (414)
                      ++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++++++||++
T Consensus       116 l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~-rA~~llltGe~  194 (360)
T TIGR03200       116 MVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCE-QAMVSGTLCEP  194 (360)
T ss_pred             HHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHH-HHHHHHHhCCc
Confidence            77889999999999999999999999999999999999999999999999999999999999999998 99999999999


Q ss_pred             CCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCc----chhhhhHHHHHhhcCCcccH
Q 015014          237 ISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGE----APLKLLLPQITSCFSSEKSV  312 (414)
Q Consensus       237 i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~i~~~F~~~~sv  312 (414)
                      ++ |+||+++|||+++||+.+++.        .+..+|.-...+++..+......+    ..+....+.++++=.+..-+
T Consensus       195 ~s-A~EA~~~GLVd~VVp~~~~~~--------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~l  265 (360)
T TIGR03200       195 WS-AHKAKRLGIIMDVVPALKVDG--------KFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQGTIDLSLL  265 (360)
T ss_pred             Cc-HHHHHHcCChheecCchhcCc--------chhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhcccchHhHH
Confidence            99 999999999999999877631        122233322233333322111111    12222222222111111011


Q ss_pred             HHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHhCCCch
Q 015014          313 RQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSD  392 (414)
Q Consensus       313 ~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D  392 (414)
                                        .+-..+...++...-|.++.-+++.+|...         ...+...-+.-..-+...+. .+
T Consensus       266 ------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~  317 (360)
T TIGR03200       266 ------------------DEAVEALCAKLLNTFPECLTKSIEELRKPK---------LFAWNQNKENSRAWLALNMM-NE  317 (360)
T ss_pred             ------------------HHHHHHHHHHHHHhchHHHHHHHHHhhhHH---------HHHHHhhhhhhHHHHHhhcc-cc
Confidence                              222233444578888899999999999765         33444444444444433333 88


Q ss_pred             HHHHHHhhHh
Q 015014          393 FAEGVRAVLV  402 (414)
Q Consensus       393 ~~eGv~afl~  402 (414)
                      ..+|++||-.
T Consensus       318 ~~~~~~~~~~  327 (360)
T TIGR03200       318 ARTGFRAFNE  327 (360)
T ss_pred             cchhhHHHhc
Confidence            9999999985

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=1.2e-43  Score=382.14  Aligned_cols=281  Identities=17%  Similarity=0.215  Sum_probs=220.7

Q ss_pred             EEEecCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE-eCCCCCccCCCChhhHHHHhhhCCCCCch
Q 015014           70 GNVHPNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE-GSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (414)
Q Consensus        70 ~~~~~~~V~~Itlnrp-~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~-g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (414)
                      ++..+++|++|||||| ++.|+||.+|+.+|.++++.++.|+++|+|||+ |.| ++||+|+|++++....    .....
T Consensus         4 ~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g-~~FcaG~Dl~~~~~~~----~~~~~   78 (699)
T TIGR02440         4 LTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKP-DNFIAGADISMLAACQ----TAGEA   78 (699)
T ss_pred             EEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CceeeccCchhhhccC----ChhHH
Confidence            3444789999999999 689999999999999999999999999999974 565 8999999999875311    11122


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCC--eeEecccccCCCCCChhHHHHHhhCCCcHH
Q 015014          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (414)
Q Consensus       148 ~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~--a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~  225 (414)
                      ..+......++..|.++||||||+|||+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|+|++|.. 
T Consensus        79 ~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~-  157 (699)
T TIGR02440        79 KALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVS-  157 (699)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHH-
Confidence            234444566778899999999999999999999999999999999986  79999999999999999999999999998 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhc-CCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTF-SEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                      ++++|++||+.++ |+||+++||||+++|++++.+.+.+++.+.. ...+. ....   +....+               
T Consensus       158 ~A~~llltG~~~~-a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~-~~~~---~~~~~~---------------  217 (699)
T TIGR02440       158 TALDMILTGKQLR-AKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPL-SLQE---RLLEGT---------------  217 (699)
T ss_pred             HHHHHHHcCCcCC-HHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCc-cchh---hhcccC---------------
Confidence            9999999999999 9999999999999999999888888875300 00000 0000   000000               


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                          +.....++               +++.+.+.+-.+..-.+...+|+.++.+.         ..+++++++.|.+.+
T Consensus       218 ----~~a~~~~~---------------~~~~k~~~~~~~~~~~a~~~~~~~i~~~~---------~~~~~~~l~~E~~~~  269 (699)
T TIGR02440       218 ----PLGRALLF---------------DQAAKKTAKKTQGNYPAAERILDVVRQGL---------AQGMQKGLDAEARAF  269 (699)
T ss_pred             ----chhHHHHH---------------HHHHHHHHHhcccCChhHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Confidence                00001111               12222222234445678888999999887         678999999999999


Q ss_pred             HHhCCCchHHHHHHhhHhCC
Q 015014          385 LRSSLRSDFAEGVRAVLVDK  404 (414)
Q Consensus       385 ~~~~~~~D~~eGv~afl~dk  404 (414)
                      ..++.++|.++++++|+.++
T Consensus       270 ~~~~~s~~~~~~~~~f~~~~  289 (699)
T TIGR02440       270 GELVMTPESAALRSIFFATT  289 (699)
T ss_pred             HHhcCCHHHHHHHHHHHHHH
Confidence            99999999999999999753

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=7.3e-43  Score=376.32  Aligned_cols=290  Identities=18%  Similarity=0.208  Sum_probs=221.3

Q ss_pred             cEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCc
Q 015014           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (414)
Q Consensus        67 ~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (414)
                      ++.++..+++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.....  .....
T Consensus         7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~~~~~   83 (714)
T TIGR02437         7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGK-DAFIVGADITEFLGLFA--LPDAE   83 (714)
T ss_pred             eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccCcCHHHHhhccc--CCHHH
Confidence            5677755789999999999999999999999999999999999999999999997 79999999999854210  01111


Q ss_pred             hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHH
Q 015014          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~  226 (414)
                      ...+......++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. +
T Consensus        84 ~~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~-~  162 (714)
T TIGR02437        84 LIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGAD-N  162 (714)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHH-H
Confidence            223344455678899999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhc
Q 015014          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF  306 (414)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F  306 (414)
                      +++|++||++++ |+||+++||||+++|++++.+.+.+++.........        ......+....+  ....+.++|
T Consensus       163 A~~llltG~~~~-A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~--------~~~~~~~~~~~~--~~~~~~~~~  231 (714)
T TIGR02437       163 ALEWIASGKENR-AEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLD--------WKAKRQPKLEPL--KLSKIEAMM  231 (714)
T ss_pred             HHHHHHcCCcCC-HHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCc--------ccccCCCCcccc--cccchHHHH
Confidence            999999999999 999999999999999999988888877552211000        000000000000  001112221


Q ss_pred             CCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHH
Q 015014          307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALR  386 (414)
Q Consensus       307 ~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~  386 (414)
                      .                       .+++.+.+.+-....-.+-..+.+.++.+.         ..+++++++.|.+.+..
T Consensus       232 ~-----------------------~~~~~~~~~~~~~~~~pap~~~~~~v~~~~---------~~~~~~gl~~E~~~f~~  279 (714)
T TIGR02437       232 S-----------------------FTTAKGMVAQVAGPHYPAPMTAVKTIEKAA---------RFGRDKALEIEAKGFVK  279 (714)
T ss_pred             H-----------------------HHHHHHHHHHhhcCCCCCHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHH
Confidence            1                       122222222223332223333445677665         56799999999999999


Q ss_pred             hCCCchHHHHHHhhHhC
Q 015014          387 SSLRSDFAEGVRAVLVD  403 (414)
Q Consensus       387 ~~~~~D~~eGv~afl~d  403 (414)
                      ++.+++.+..++.|+.+
T Consensus       280 l~~s~~a~~l~~~ff~~  296 (714)
T TIGR02437       280 LAKTSEAKALIGLFLND  296 (714)
T ss_pred             HhCCHHHHHHHHHHhhh
Confidence            99999999999999975

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=3.3e-43  Score=314.73  Aligned_cols=261  Identities=22%  Similarity=0.254  Sum_probs=215.4

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC--CCCCccCCCChhhHHHHhhhC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS--GPRAFCAGMDIKGVVAEIQKD  141 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~--g~~~FcaG~Dl~~~~~~~~~~  141 (414)
                      .|+.|+|+...++|+.|+||||+++||+.+..+.||.+++..+..|++|.+|||||.  |+++||+|+|-+--.... .-
T Consensus        16 ~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~-gY   94 (282)
T COG0447          16 GYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSG-GY   94 (282)
T ss_pred             CcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCC-Cc
Confidence            578899998558999999999999999999999999999999999999999999975  789999999987543311 00


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCC
Q 015014          142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP  221 (414)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~  221 (414)
                      .+.+...  .-...++-+.|+.+||||||.|+|+|+|||-.|-+.||+-||+++|+|++...++|-+-++.++..|.|++
T Consensus        95 ~~d~~~~--rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V  172 (282)
T COG0447          95 VDDDGIP--RLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV  172 (282)
T ss_pred             cCCccCc--ccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh
Confidence            1111111  11223455688999999999999999999999999999999999999999999999987777777899999


Q ss_pred             CcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHH
Q 015014          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ  301 (414)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  301 (414)
                      |.. +|+|+.+.++.++ |+||+++|+||.|||.++|++..                                       
T Consensus       173 GqK-kArEIwfLcR~Y~-A~eal~MGlVN~Vvp~~~LE~e~---------------------------------------  211 (282)
T COG0447         173 GQK-KAREIWFLCRQYD-AEEALDMGLVNTVVPHADLEKET---------------------------------------  211 (282)
T ss_pred             hhh-hhHHhhhhhhhcc-HHHHHhcCceeeeccHHHHHHHH---------------------------------------
Confidence            997 9999999999999 99999999999999999987644                                       


Q ss_pred             HHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHH
Q 015014          302 ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEY  381 (414)
Q Consensus       302 i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~  381 (414)
                                                   ..|++    .|.++||++++.-|-+++..          ..++...-+..-
T Consensus       212 -----------------------------v~W~~----E~l~kSP~AlR~LK~Afnad----------~DGlaG~q~~ag  248 (282)
T COG0447         212 -----------------------------VQWAR----EMLAKSPTALRMLKAAFNAD----------CDGLAGLQELAG  248 (282)
T ss_pred             -----------------------------HHHHH----HHHhcChHHHHHHHHHhcCC----------CchhhHHHHhcc
Confidence                                         35665    38899999999999999853          233433323333


Q ss_pred             HHHHHhCCCchHHHHHHhhHhCCCCCCCCCcC
Q 015014          382 RVALRSSLRSDFAEGVRAVLVDKDQVLSQLKL  413 (414)
Q Consensus       382 ~~~~~~~~~~D~~eGv~afl~dk~~~P~~~~~  413 (414)
                      ....-...+++.+||-.||+  ++|+|.||+|
T Consensus       249 ~at~L~YmTdEa~EGr~AF~--eKR~Pdf~~f  278 (282)
T COG0447         249 NATLLYYMTDEAQEGRDAFL--EKRKPDFSKF  278 (282)
T ss_pred             cceEEEEechhhhhhHHHHh--hccCCChHhc
Confidence            33333456999999999999  8999999986

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=5.3e-41  Score=362.66  Aligned_cols=299  Identities=20%  Similarity=0.208  Sum_probs=217.3

Q ss_pred             cccccCCCccEEEEEecCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEeCCCCCccCCCChhhHH
Q 015014           58 TMAAAGAEEFVKGNVHPNGVAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCV-LIEGSGPRAFCAGMDIKGVV  135 (414)
Q Consensus        58 ~~~~~~~~~~v~~~~~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~v~~v-Vl~g~g~~~FcaG~Dl~~~~  135 (414)
                      ++.+.|.++.+.++. +++|++||||||+ +.|+||.+|+.+|.++++.++.|+++|+| |++|.| ++||+|+|++++.
T Consensus         5 ~~~~~~~~~~~~~~~-~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g-~~F~aG~Dl~~~~   82 (737)
T TIGR02441         5 TSAALMARTHRHYEV-KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP-GSFVAGADIQMIA   82 (737)
T ss_pred             CCCCCCCCCeEEEEE-ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCC-CcceeCcCHHHHh
Confidence            333446778888887 7999999999998 58999999999999999999999999975 568887 8999999999885


Q ss_pred             HHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCC--eeEecccccCCCCCChhH
Q 015014          136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENGIGLFPDVGF  213 (414)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~--a~f~~pe~~~Gl~P~~g~  213 (414)
                      ..    ........+......++.+|.++||||||+|||+|+|||++|+++||||||+++  ++|++||+++|++|++|+
T Consensus        83 ~~----~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Gg  158 (737)
T TIGR02441        83 AC----KTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGG  158 (737)
T ss_pred             cc----CChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccH
Confidence            31    111122334445567888999999999999999999999999999999999997  589999999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCC-------------CCHHHHHHHHHHhhcCCCcHHHHHH
Q 015014          214 SYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-------------GNLGSLKEALLAVTFSEDPHQDIVA  280 (414)
Q Consensus       214 ~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~-------------~~l~~~~~~l~~~~~~~~~~~~~~~  280 (414)
                      +++|+|++|.. ++++|++||++++ |+||+++||||+|||+             +++.+.+.+++........      
T Consensus       159 t~rLprliG~~-~A~~l~ltG~~i~-a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~------  230 (737)
T TIGR02441       159 TQRLPKLTGVP-AALDMMLTGKKIR-ADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKL------  230 (737)
T ss_pred             hhhHHHhhCHH-HHHHHHHcCCcCC-HHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccC------
Confidence            99999999998 9999999999999 9999999999999986             2233444333322110000      


Q ss_pred             HHHhhcCCCCCcchhhhhHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Q 015014          281 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  360 (414)
Q Consensus       281 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~  360 (414)
                      ..+++....+.....         ....+..-..+               .+.+++.+.+=.+....+-..+.+.+..+.
T Consensus       231 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~  286 (737)
T TIGR02441       231 SINRDKGLVHKITQY---------VMTNPFVRQQV---------------YKTAEDKVMKQTKGLYPAPLKILDVVRTGY  286 (737)
T ss_pred             CccccccccCccchh---------hcccchhHHHH---------------HHHHHHHHHHhccCCCccHHHHHHHHHHHh
Confidence            000000000000000         00000000111               112222222223332344455566777765


Q ss_pred             hhcCCCCcccCCHHHHHHHHHHHHHHhCCCchHHHHHHhhHhC
Q 015014          361 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVD  403 (414)
Q Consensus       361 ~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~afl~d  403 (414)
                               ..+++++++.|.+.+..++.+++.+.-+..|+.+
T Consensus       287 ---------~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~  320 (737)
T TIGR02441       287 ---------DQGPDAGYEAESKAFGELSMTFESKALIGLFHGQ  320 (737)
T ss_pred             ---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                     5679999999999999999999999999999865

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=2.7e-41  Score=320.54  Aligned_cols=190  Identities=15%  Similarity=0.166  Sum_probs=156.5

Q ss_pred             EEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEeCCCCCccCCCChhhHHHHhhhCCCCCc
Q 015014           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVK-CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (414)
Q Consensus        68 v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~-~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (414)
                      +.++. +++|++|+||||++ |+||.+|+.+|.++++.++.|++++ +||++|.| ++||+|+|++++...   ......
T Consensus         2 ~~~~~-~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g-~~FsaG~Dl~~~~~~---~~~~~~   75 (239)
T PLN02267          2 CTLEK-RGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEG-KFFSNGFDLAWAQAA---GSAPSR   75 (239)
T ss_pred             ceeEe-cCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCC-CceeCCcCHHHHhcc---ccCHHH
Confidence            45665 78999999999986 9999999999999999999999875 77778876 899999999976421   011111


Q ss_pred             hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEc-CCeeEecccccCCCCCChhHHHHHhhCCCcHH
Q 015014          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~-~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~  225 (414)
                      ...+.....+++.++.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+.+++++|++.+|.. 
T Consensus        76 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~-  154 (239)
T PLN02267         76 LHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSP-  154 (239)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChH-
Confidence            12233444567788999999999999999999999999999999998 5689999999999974444588999999987 


Q ss_pred             HH-HHHHhcCCCCCcHHHHHHcCccceecCC-CCHHHHHHHH
Q 015014          226 VG-AYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEAL  265 (414)
Q Consensus       226 ~a-~~l~ltG~~i~~a~eA~~~GLv~~vv~~-~~l~~~~~~l  265 (414)
                      ++ ++|++||++++ |+||+++|||++++|+ +++.+.+.++
T Consensus       155 ~a~~~llltG~~~~-a~eA~~~Glv~~vv~~~~~l~~~a~~~  195 (239)
T PLN02267        155 AARRDVLLRAAKLT-AEEAVEMGIVDSAHDSAEETVEAAVRL  195 (239)
T ss_pred             HHHHHHHHcCCcCC-HHHHHHCCCcceecCCHHHHHHHHHHH
Confidence            88 69999999999 9999999999999985 4665544443

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=2.5e-39  Score=298.38  Aligned_cols=258  Identities=21%  Similarity=0.278  Sum_probs=224.5

Q ss_pred             CCCccEEEEEecCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhC
Q 015014           63 GAEEFVKGNVHPNGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itln-rp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~  141 (414)
                      +.+..+.++. .|++.+|.+| ||++.|+|+.+|+.++..+++.+.+|+++..+|++|.| ++||+|.|++.+......+
T Consensus         4 ~~~~~~vv~~-~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G-~~f~sG~Df~~~~~~~~~d   81 (266)
T KOG0016|consen    4 MRYREIVVTR-ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNG-SYFCSGLDFSPFAKALDDD   81 (266)
T ss_pred             ccccceEEEe-cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCc-cEEeeccccchhhhcCCCc
Confidence            3456677775 8999999999 99999999999999999999999999999999999997 9999999999988754332


Q ss_pred             CCCCchHHH---HHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHh
Q 015014          142 RNTPLVPKV---FTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA  218 (414)
Q Consensus       142 ~~~~~~~~~---~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~  218 (414)
                      .. ......   ...+.-+...+..+|||+||+|||+|+|-|+.+.-.||+++|+|+++|..|++++|..|++|+++.+|
T Consensus        82 ~~-~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p  160 (266)
T KOG0016|consen   82 AN-EESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLP  160 (266)
T ss_pred             cc-ccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeeh
Confidence            22 112212   22222366788999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhh
Q 015014          219 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLL  298 (414)
Q Consensus       219 r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  298 (414)
                      +++|.. .|.||++.|++++ |+||.+.|||++++|.+++.+.                                     
T Consensus       161 ~imG~~-~A~E~ll~~~klt-A~Ea~~~glVskif~~~tf~~~-------------------------------------  201 (266)
T KOG0016|consen  161 KIMGSA-SANEMLLFGEKLT-AQEACEKGLVSKIFPAETFNEE-------------------------------------  201 (266)
T ss_pred             Hhhchh-hHHHHHHhCCccc-HHHHHhcCchhhhcChHHHHHH-------------------------------------
Confidence            999997 9999999999999 9999999999999999776432                                     


Q ss_pred             HHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHH
Q 015014          299 LPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMK  378 (414)
Q Consensus       299 ~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~  378 (414)
                                                         +.+.++++++.||.+++..|++++...         ...+..+.+
T Consensus       202 -----------------------------------v~~~ikq~s~l~p~sl~~~K~L~rs~~---------k~~l~~an~  237 (266)
T KOG0016|consen  202 -----------------------------------VLKKIKQYSKLSPESLLGMKKLLRSNI---------KEELIKANE  237 (266)
T ss_pred             -----------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHHH---------HHHHHHhhH
Confidence                                               223345688999999999999999877         567999999


Q ss_pred             HHHHHHHHhCCCchHHHHHHhhHhCCCC
Q 015014          379 YEYRVALRSSLRSDFAEGVRAVLVDKDQ  406 (414)
Q Consensus       379 ~e~~~~~~~~~~~D~~eGv~afl~dk~~  406 (414)
                      .|.......|.++|+.+.+.+|+.++++
T Consensus       238 ~E~~~l~~~W~s~e~~~~~~~~~~~~~k  265 (266)
T KOG0016|consen  238 EECNVLLKQWVSAECLARFKQYLSKKRK  265 (266)
T ss_pred             HHHHHHHhhccChHHHHHHHHHhccccc
Confidence            9999999999999999999999976654

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=5.6e-39  Score=294.96  Aligned_cols=193  Identities=32%  Similarity=0.435  Sum_probs=174.4

Q ss_pred             EEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchH
Q 015014           69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP  148 (414)
Q Consensus        69 ~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~  148 (414)
                      .++. +++|++|+||+|++.|++|.+|+++|.++++.++.|+++++|||+|.| +.||+|+|++++.....   ..+...
T Consensus         2 ~~~~-~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~-~~Fs~G~dl~~~~~~~~---~~~~~~   76 (195)
T cd06558           2 LVER-DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAG-KAFCAGADLKELAALSD---AGEEAR   76 (195)
T ss_pred             EEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhcccc---cchhHH
Confidence            4554 689999999999999999999999999999999999999999999985 99999999999875321   111244


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHH
Q 015014          149 KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGA  228 (414)
Q Consensus       149 ~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~  228 (414)
                      .+....+.++..+..++||+||+|||+|+|+|++++++|||||++++++|++||+++|++|+.|++++|++++|.. .+.
T Consensus        77 ~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~-~a~  155 (195)
T cd06558          77 AFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPA-RAR  155 (195)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHH-HHH
Confidence            5777778899999999999999999999999999999999999999999999999999999999999999999987 999


Q ss_pred             HHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHh
Q 015014          229 YLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV  268 (414)
Q Consensus       229 ~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~  268 (414)
                      +++++|+.++ |+||+++||++++++.+++.+.+.++++.
T Consensus       156 ~~~l~g~~~~-a~ea~~~Glv~~~~~~~~l~~~a~~~a~~  194 (195)
T cd06558         156 ELLLTGRRIS-AEEALELGLVDEVVPDEELLAAALELARR  194 (195)
T ss_pred             HHHHcCCccC-HHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence            9999999999 99999999999999998888877776643

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=1.4e-38  Score=330.94  Aligned_cols=201  Identities=15%  Similarity=0.175  Sum_probs=170.0

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCCCCCccCCCCh
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPK----------ALNAMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRAFCAGMDI  131 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~----------~~Nal~~~m~~eL~~~l~~~~-~d~~v~~vVl~g~g~~~FcaG~Dl  131 (414)
                      ..++++.++. +++|++|+||||+          ++|+||.+|+.+|.++++.++ .|+++|+|||||.++++||+|+|+
T Consensus         8 ~~~~~v~~~~-~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL   86 (546)
T TIGR03222         8 SQYRHWKLTF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANI   86 (546)
T ss_pred             CCCceEEEEe-eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCH
Confidence            4577888886 7899999999976          899999999999999999999 789999999999755899999999


Q ss_pred             hhHHHHhhhCCCCCchHHHHHHH-HHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCC--eeEeccccc-CCC
Q 015014          132 KGVVAEIQKDRNTPLVPKVFTAE-YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENG-IGL  207 (414)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~--a~f~~pe~~-~Gl  207 (414)
                      +++.... .. .......+.... ..+...+.++||||||+|||+|+|||++|+++||+||++++  ++|++||++ +|+
T Consensus        87 ~~~~~~~-~~-~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl  164 (546)
T TIGR03222        87 FMLGLST-HA-WKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGV  164 (546)
T ss_pred             HHHhccc-cc-hhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCc
Confidence            9874311 00 000011111111 23445678899999999999999999999999999999996  799999997 999


Q ss_pred             CCChhHHHHHh--hCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHh
Q 015014          208 FPDVGFSYIAA--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV  268 (414)
Q Consensus       208 ~P~~g~~~~L~--r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~  268 (414)
                      +|++|++++++  +.+|.. ++++|++||+.|+ |+||++||||+++||++++.+.+.+++.+
T Consensus       165 ~P~~gg~~~l~~~~~vg~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~lA~~  225 (546)
T TIGR03222       165 LPGTGGLTRVTDKRRVRRD-HADIFCTIEEGVR-GKRAKEWRLVDEVVKPSQFDAAIAERAAE  225 (546)
T ss_pred             CCccchhhhccccchhCHH-HHHHHHHcCCCcc-HHHHHHcCCceEEeChHHHHHHHHHHHHH
Confidence            99999999997  789997 9999999999999 99999999999999999998888887766

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=3.5e-38  Score=279.88  Aligned_cols=248  Identities=23%  Similarity=0.343  Sum_probs=217.5

Q ss_pred             cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHH
Q 015014           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA  153 (414)
Q Consensus        74 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (414)
                      .++|-.|+||+|+++|.|+.+|+.+|.+.+....++.++|+|||+..| +.||+|.||+++....    ..+.....|..
T Consensus        39 ~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~G-kifSaGH~LKELt~e~----g~d~haevFqt  113 (287)
T KOG1682|consen   39 HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQG-KIFSAGHNLKELTNEP----GSDIHAEVFQT  113 (287)
T ss_pred             ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCC-ccccccccHHHhhcCc----cchHHHHHHHH
Confidence            589999999999999999999999999999998888999999999998 8999999999987632    23444567777


Q ss_pred             HHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhc
Q 015014          154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT  233 (414)
Q Consensus       154 ~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~lt  233 (414)
                      .-+++.-|+++|+||||-|||+|..+||.|...||++||+++++|..|...+|++...-|. -|.|.+.+. .++||++|
T Consensus       114 c~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRk-va~~ML~T  191 (287)
T KOG1682|consen  114 CTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRK-VAAYMLMT  191 (287)
T ss_pred             HHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchh-HHHHHHHh
Confidence            7889999999999999999999999999999999999999999999999999997433222 378888887 99999999


Q ss_pred             CCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcCCcccHH
Q 015014          234 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVR  313 (414)
Q Consensus       234 G~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~sv~  313 (414)
                      |.+|+ ++||+..|||+++||.++++..+++++.                                              
T Consensus       192 g~Pi~-~eeAl~sGlvskvVp~~el~~e~~~i~~----------------------------------------------  224 (287)
T KOG1682|consen  192 GLPIT-GEEALISGLVSKVVPAEELDKEIEEITN----------------------------------------------  224 (287)
T ss_pred             CCCCc-hHHHHHhhhhhhcCCHHHHHHHHHHHHH----------------------------------------------
Confidence            99999 9999999999999999998766555543                                              


Q ss_pred             HHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHhCCCchH
Q 015014          314 QIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDF  393 (414)
Q Consensus       314 ~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~  393 (414)
                                                +|...|..-+.+.|+.+....         ..+-.+++....+.+...+.-.|.
T Consensus       225 --------------------------~i~~~srav~slgk~f~y~q~---------~ms~~ea~~~~~~~m~~n~ql~d~  269 (287)
T KOG1682|consen  225 --------------------------AIKAKSRAVISLGKEFYYKQL---------AMSQAEAFSAAQEKMCENFQLGDT  269 (287)
T ss_pred             --------------------------HHhhhHHHHHHHHHHHHHHHH---------HHhHHHHHHHHHHHHhhcccccch
Confidence                                      378888888899999998876         567889999999999999999999


Q ss_pred             HHHHHhhHhCCCCCCCCCcC
Q 015014          394 AEGVRAVLVDKDQVLSQLKL  413 (414)
Q Consensus       394 ~eGv~afl~dk~~~P~~~~~  413 (414)
                      +|||.+|+   .++|..||-
T Consensus       270 kegiasf~---~krp~~~~h  286 (287)
T KOG1682|consen  270 KEGIASFF---EKRPPNWKH  286 (287)
T ss_pred             HHHHHHHh---ccCCCCcCC
Confidence            99999999   455666663

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=9.4e-38  Score=325.69  Aligned_cols=201  Identities=16%  Similarity=0.194  Sum_probs=169.3

Q ss_pred             CCCccEEEEEecCcEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCCCCCccCCCCh
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRP-------K---ALNAMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRAFCAGMDI  131 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp-------~---~~Nal~~~m~~eL~~~l~~~~-~d~~v~~vVl~g~g~~~FcaG~Dl  131 (414)
                      ++++.+.++. +++|++|+||||       +   ++|+||.+|+.+|.++++.++ +|+++|+|||+|.++++||+|+|+
T Consensus        12 ~~~~~~~~e~-~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL   90 (550)
T PRK08184         12 SQYRHWKLSF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI   90 (550)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence            5678899987 699999999965       4   899999999999999999999 789999999999866899999999


Q ss_pred             hhHHHHhhhCCCCCchHHHHHHHH-HHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCC--eeEeccccc-CCC
Q 015014          132 KGVVAEIQKDRNTPLVPKVFTAEY-SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENG-IGL  207 (414)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~--a~f~~pe~~-~Gl  207 (414)
                      +++.....  ........+....+ .+...+.++||||||+|||+|+|||++|+++|||||++++  ++|++||++ +|+
T Consensus        91 ~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl  168 (550)
T PRK08184         91 FMLGGSSH--AWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGV  168 (550)
T ss_pred             HhHhcccc--chhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhcccc
Confidence            98743110  00000011111111 2345678899999999999999999999999999999987  899999997 999


Q ss_pred             CCChhHHHHHh--hCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHh
Q 015014          208 FPDVGFSYIAA--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV  268 (414)
Q Consensus       208 ~P~~g~~~~L~--r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~  268 (414)
                      +|++|++++|+  +.+|.. ++++|++||+.++ |+||+++|||+++||++++.+.+.+++.+
T Consensus       169 ~P~~gg~~rl~~~~~vg~~-~A~~llltG~~i~-AeeA~~~GLVd~vv~~d~l~~~a~~~A~~  229 (550)
T PRK08184        169 LPGTGGLTRVTDKRKVRRD-LADIFCTIEEGVR-GKRAVDWRLVDEVVKPSKFDAKVAERAAE  229 (550)
T ss_pred             CCCcchHHHhhhhhhcCHH-HHHHHHHhCCccc-HHHHHHcCCccEeeCHHHHHHHHHHHHHH
Confidence            99999999998  789997 9999999999999 99999999999999999998887777665

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.79  E-value=3.5e-19  Score=161.59  Aligned_cols=141  Identities=15%  Similarity=0.022  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEEEEECC
Q 015014           95 MDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDG  174 (414)
Q Consensus        95 m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG  174 (414)
                      ...+|.++++.+++|+++++|||++     +|.|+|+....                 ...+++..+.+++|||||+|||
T Consensus        23 ~~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~~-----------------~~~~~i~~~~~~~kpVia~v~G   80 (177)
T cd07014          23 SGDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTASE-----------------VIRAELAAARAAGKPVVASGGG   80 (177)
T ss_pred             CHHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHHH-----------------HHHHHHHHHHhCCCCEEEEECC
Confidence            5789999999999999999999986     68898876431                 1223556777899999999999


Q ss_pred             ccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHH--------HHhhCCC--cHHHHHHHHhcCCCCCcHHHHH
Q 015014          175 VTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY--------IAAKGPG--GGSVGAYLGMTGKRISTPSDAL  244 (414)
Q Consensus       175 ~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~--------~L~r~~G--~~~~a~~l~ltG~~i~~a~eA~  244 (414)
                      .|.|||+.|+++||++++++++.|+.+.+..+..+......        .+++..|  .. ..++++..|..++ |++|+
T Consensus        81 ~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~-~~~~~l~~g~~~~-a~~A~  158 (177)
T cd07014          81 NAASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPE-QQIDKIAQGGVWT-GQDAK  158 (177)
T ss_pred             chhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHH-HhHHHhcCcCeEe-HHHHH
Confidence            99999999999999999999999999987766433222222        4445555  54 6788999999999 99999


Q ss_pred             HcCccceecCCCCHH
Q 015014          245 FAGLGTDYVPSGNLG  259 (414)
Q Consensus       245 ~~GLv~~vv~~~~l~  259 (414)
                      +.||||++.+.+++.
T Consensus       159 ~~GLVD~v~~~~e~~  173 (177)
T cd07014         159 ANGLVDSLGSFDDAV  173 (177)
T ss_pred             HcCCcccCCCHHHHH
Confidence            999999999876654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A

Probab=99.79  E-value=4.5e-19  Score=149.93  Aligned_cols=99  Identities=38%  Similarity=0.605  Sum_probs=84.3

Q ss_pred             hhhhHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHH
Q 015014          295 LKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLS  374 (414)
Q Consensus       295 ~~~~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~  374 (414)
                      +......|++||+.+ |+++|+++|+...       .+|+.++++.|.++||+|+++|.++++++.         ..+++
T Consensus         2 L~~~~~~I~~~F~~~-s~~eI~~~L~~~~-------~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~---------~~sl~   64 (118)
T PF13766_consen    2 LAEHLEAIDRCFSAD-SVEEIIEALEADG-------DEWAQKTLETLRSGSPLSLKVTFEQLRRGR---------NLSLA   64 (118)
T ss_dssp             CHHCHHHHHHHTTSS-SHHHHHHHHHHHS--------HHHHHHHHHHCCS-HHHHHHHHHHHHCCT---------TS-HH
T ss_pred             hHHHHHHHHHHhCCC-CHHHHHHHHHccC-------cHHHHHHHHHHHHCCHHHHHHHHHHHHHhh---------hCCHH
Confidence            456788999999987 9999999999965       699999999999999999999999999987         68999


Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          375 GVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       375 ~~l~~e~~~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +++++|+++..+++..+||.|||||.||||++.|+|
T Consensus        65 e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P~W  100 (118)
T PF13766_consen   65 ECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNPKW  100 (118)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHTTS-------
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCC
Confidence            999999999999999999999999999999999976

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.78  E-value=1.3e-18  Score=159.19  Aligned_cols=145  Identities=12%  Similarity=0.014  Sum_probs=115.6

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE-eCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           78 AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE-GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        78 ~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~-g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      ++|.++     ..++..+...+.+.++.+++++ ++.|+|. .+      -|+++..-.                    .
T Consensus         2 ~vv~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InS------pGG~v~~~~--------------------~   49 (187)
T cd07020           2 YVLEIN-----GAITPATADYLERAIDQAEEGG-ADALIIELDT------PGGLLDSTR--------------------E   49 (187)
T ss_pred             EEEEEe-----eEEChHHHHHHHHHHHHHHhCC-CCEEEEEEEC------CCCCHHHHH--------------------H
Confidence            456665     3466777888999999998765 7888876 33      234443211                    2


Q ss_pred             HHHHHhhCCCcEEEEEC---CccccchhhhhccCCeEEEcCCeeEecccccCCCCCCh--------------hHHHHHhh
Q 015014          157 LICKISEYKKPYISLMD---GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDV--------------GFSYIAAK  219 (414)
Q Consensus       157 l~~~l~~~~kPvIAavn---G~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~--------------g~~~~L~r  219 (414)
                      ++..|..+||||||+|+   |+|.|||+.|+++||++|++++++|+++++..|..+..              +....+++
T Consensus        50 i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (187)
T cd07020          50 IVQAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAE  129 (187)
T ss_pred             HHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            34467789999999999   99999999999999999999999999999985554432              34557888


Q ss_pred             CCCc--HHHHHHHHhcCCCCCcHHHHHHcCccceecCCC
Q 015014          220 GPGG--GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG  256 (414)
Q Consensus       220 ~~G~--~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~  256 (414)
                      ..|.  . .+.+++++|+.++ |+||+++||||++++++
T Consensus       130 ~~G~~~~-~a~~~l~~g~~~~-a~eA~~~Glvd~v~~~~  166 (187)
T cd07020         130 LRGRNAE-WAEKAVRESLSLT-AEEALKLGVIDLIAADL  166 (187)
T ss_pred             HcCCCHH-HHHHHHHcCCeec-HHHHHHcCCcccccCCH
Confidence            8887  5 7899999999999 99999999999999875

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.63  E-value=1.1e-15  Score=142.46  Aligned_cols=101  Identities=15%  Similarity=0.157  Sum_probs=80.2

Q ss_pred             EEEEEEcCC--CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHH
Q 015014           77 VAVITLDRP--KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAE  154 (414)
Q Consensus        77 V~~Itlnrp--~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~  154 (414)
                      |++|.++-|  +..+.-+..++.+|.++|+.+..||++++|||+     .||+|+|+..+..                 .
T Consensus         2 i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~~~-----------------~   59 (211)
T cd07019           2 IGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTASEV-----------------I   59 (211)
T ss_pred             EEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHHHH-----------------H
Confidence            445555433  112333445689999999999999999999996     6999999976532                 1


Q ss_pred             HHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEe
Q 015014          155 YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  199 (414)
Q Consensus       155 ~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~  199 (414)
                      ++.+..+..++|||||+++|.|.|+|+.|+++||++++++++.|+
T Consensus        60 ~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~g  104 (211)
T cd07019          60 RAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTG  104 (211)
T ss_pred             HHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEE
Confidence            234556788999999999999999999999999999999998876

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.50  E-value=2.2e-13  Score=127.33  Aligned_cols=96  Identities=18%  Similarity=0.192  Sum_probs=74.3

Q ss_pred             cCCCCCCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHH
Q 015014           83 DRPKALNA-MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKI  161 (414)
Q Consensus        83 nrp~~~Na-l~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  161 (414)
                      ++|...|+ ++..++.+|.++|+.+++|+++++|||+.     +|.|+++....                 ...+.+..+
T Consensus        13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~-----~s~gg~~~~~~-----------------~l~~~l~~~   70 (214)
T cd07022          13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI-----DSPGGEVAGVF-----------------ELADAIRAA   70 (214)
T ss_pred             CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE-----eCCCCcHHHHH-----------------HHHHHHHHH
Confidence            45655565 45689999999999999999999999975     45566654321                 112223334


Q ss_pred             hhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecc
Q 015014          162 SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  201 (414)
Q Consensus       162 ~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~p  201 (414)
                      .. +|||||+++|.|.|||+.|+++||++++++++.|+..
T Consensus        71 ~~-~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i  109 (214)
T cd07022          71 RA-GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSI  109 (214)
T ss_pred             hc-CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEee
Confidence            44 6999999999999999999999999999999987654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.50  E-value=1.9e-13  Score=121.90  Aligned_cols=135  Identities=14%  Similarity=0.050  Sum_probs=103.1

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEEE
Q 015014           91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS  170 (414)
Q Consensus        91 l~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA  170 (414)
                      ++..+..+|.+.|+.++.|+.+++|||..     .|.|+|+....                    .+...|..++||||+
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~-----~s~Gg~~~~~~--------------------~i~~~l~~~~kpvva   62 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLEV-----NTPGGRVDAGM--------------------NIVDALQASRKPVIA   62 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEEE-----ECCCcCHHHHH--------------------HHHHHHHHhCCCEEE
Confidence            45688999999999999999999999975     46677765322                    233467778899999


Q ss_pred             EECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHH------H-------HHh------hCCCcHHHHHHHH
Q 015014          171 LMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS------Y-------IAA------KGPGGGSVGAYLG  231 (414)
Q Consensus       171 avnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~------~-------~L~------r~~G~~~~a~~l~  231 (414)
                      .++|.|.++|+.|+++||.|++.+++.|++..+..+.....+-.      .       .+.      |.+... ...+++
T Consensus        63 ~~~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~-~~~~~~  141 (161)
T cd00394          63 YVGGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTE-KLEEDI  141 (161)
T ss_pred             EECChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHh
Confidence            99999999999999999999999999999988876654322000      0       111      112222 356778


Q ss_pred             hcCCCCCcHHHHHHcCcccee
Q 015014          232 MTGKRISTPSDALFAGLGTDY  252 (414)
Q Consensus       232 ltG~~i~~a~eA~~~GLv~~v  252 (414)
                      .+|..++ |+||++.||||++
T Consensus       142 ~~~~~~~-a~eA~~~GLvD~i  161 (161)
T cd00394         142 EKDLVLT-AQEALEYGLVDAL  161 (161)
T ss_pred             cCCcEEc-HHHHHHcCCcCcC
Confidence            8899999 9999999999975

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.47  E-value=1.8e-13  Score=145.14  Aligned_cols=155  Identities=18%  Similarity=0.200  Sum_probs=117.0

Q ss_pred             cCcEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC--CCccCCCChhhHHHHhhhCCCCCchHH
Q 015014           74 PNGVAVITLDRPK--ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP--RAFCAGMDIKGVVAEIQKDRNTPLVPK  149 (414)
Q Consensus        74 ~~~V~~Itlnrp~--~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~--~~FcaG~Dl~~~~~~~~~~~~~~~~~~  149 (414)
                      ++.|++|+++.+=  ..|..+....+.+.+.++.+..|++|++|||+-..|  .+||+    .                 
T Consensus       307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as----e-----------------  365 (584)
T TIGR00705       307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS----E-----------------  365 (584)
T ss_pred             CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH----H-----------------
Confidence            6789999999763  234444445667888899999999999999995432  23332    1                 


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeE------eccc------ccCCCCCChhHHHHH
Q 015014          150 VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL------AMPE------NGIGLFPDVGFSYIA  217 (414)
Q Consensus       150 ~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f------~~pe------~~~Gl~P~~g~~~~L  217 (414)
                         ..++.+..+...+||||+.++|.|.+||+.++++||.++|++.+.+      +++.      .++|+.|+...+..+
T Consensus       366 ---~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~  442 (584)
T TIGR00705       366 ---IIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHEL  442 (584)
T ss_pred             ---HHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCc
Confidence               1122334566778999999999999999999999999999999876      6553      589998877666544


Q ss_pred             hh----------------------------CCCcHHH-----HHHHHhcCCCCCcHHHHHHcCccceecC
Q 015014          218 AK----------------------------GPGGGSV-----GAYLGMTGKRISTPSDALFAGLGTDYVP  254 (414)
Q Consensus       218 ~r----------------------------~~G~~~~-----a~~l~ltG~~i~~a~eA~~~GLv~~vv~  254 (414)
                      ..                            .++.+ +     ..+.+.+|+.++ |+||+++||||++..
T Consensus       443 ~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~-R~l~~e~v~~ia~Grv~t-g~eA~~~GLVD~ig~  510 (584)
T TIGR00705       443 ANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAG-RNLTPTQVDKVAQGRVWT-GEDAVSNGLVDALGG  510 (584)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCHHHHHHHHhCCCcC-HHHHHHcCCcccCCC
Confidence            32                            34333 4     678889999999 999999999999943

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.44  E-value=9.5e-13  Score=117.40  Aligned_cols=130  Identities=15%  Similarity=0.146  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEEEEEC
Q 015014           94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD  173 (414)
Q Consensus        94 ~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavn  173 (414)
                      .+...+.+.|+.++.++.+ .+.|.+.|       +++..                    ...+...|..++||||+.++
T Consensus        15 ~~~~~~~~~l~~~~~~~~i-~l~inspG-------G~~~~--------------------~~~i~~~i~~~~~pvi~~v~   66 (160)
T cd07016          15 VTAKEFKDALDALGDDSDI-TVRINSPG-------GDVFA--------------------GLAIYNALKRHKGKVTVKID   66 (160)
T ss_pred             cCHHHHHHHHHhccCCCCE-EEEEECCC-------CCHHH--------------------HHHHHHHHHhcCCCEEEEEc
Confidence            4677888888888877433 34445555       22211                    12345567889999999999


Q ss_pred             CccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhH---------------HHHHhhCCCcH-HHHHHHHhcCCCC
Q 015014          174 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF---------------SYIAAKGPGGG-SVGAYLGMTGKRI  237 (414)
Q Consensus       174 G~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~---------------~~~L~r~~G~~-~~a~~l~ltG~~i  237 (414)
                      |.|.|+|+.|+++||+|+++++++|+++....|..+....               ...+.+..|.. ....+++.++..+
T Consensus        67 g~a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l  146 (160)
T cd07016          67 GLAASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWL  146 (160)
T ss_pred             chHHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeEC
Confidence            9999999999999999999999999998877665544322               23366777742 2667777777789


Q ss_pred             CcHHHHHHcCcccee
Q 015014          238 STPSDALFAGLGTDY  252 (414)
Q Consensus       238 ~~a~eA~~~GLv~~v  252 (414)
                      + |+||+++||||+|
T Consensus       147 ~-a~eA~~~GliD~v  160 (160)
T cd07016         147 T-AQEAVELGFADEI  160 (160)
T ss_pred             c-HHHHHHcCCCCcC
Confidence            8 9999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.40  E-value=2.8e-12  Score=119.31  Aligned_cols=86  Identities=19%  Similarity=0.124  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEEEEE
Q 015014           93 LDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLM  172 (414)
Q Consensus        93 ~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav  172 (414)
                      ..++.+|.++|+.++.|+++++|||++     +|.|+|+....                 ..++.+..+..++|||||++
T Consensus        16 ~~~~~~l~~~l~~a~~d~~i~~ivl~~-----~s~Gg~~~~~~-----------------~i~~~i~~~~~~~kpvia~v   73 (208)
T cd07023          16 GIGADSLIEQLRKAREDDSVKAVVLRI-----NSPGGSVVASE-----------------EIYREIRRLRKAKKPVVASM   73 (208)
T ss_pred             CCCHHHHHHHHHHHHhCCCCcEEEEEE-----ECCCCCHHHHH-----------------HHHHHHHHHHhcCCcEEEEE
Confidence            678999999999999999999999987     47788886521                 12334557788899999999


Q ss_pred             CCccccchhhhhccCCeEEEcCCeeEec
Q 015014          173 DGVTMGFGIGISGHGRYRIVTEKTLLAM  200 (414)
Q Consensus       173 nG~a~GgG~~Lala~D~ria~~~a~f~~  200 (414)
                      +|.|.|+|+.|+++||++++++.+.|+.
T Consensus        74 ~g~~~s~g~~lA~aaD~i~a~~~s~~g~  101 (208)
T cd07023          74 GDVAASGGYYIAAAADKIVANPTTITGS  101 (208)
T ss_pred             CCcchhHHHHHHhhCCEEEECCCCeEEe
Confidence            9999999999999999999999998853

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.34  E-value=1.5e-11  Score=114.32  Aligned_cols=137  Identities=15%  Similarity=0.093  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCC--CcEEEEEC
Q 015014           96 DIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYK--KPYISLMD  173 (414)
Q Consensus        96 ~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--kPvIAavn  173 (414)
                      ..+|.++|+.+.+|+++++|||++.     |.|+|+....                    .+...|..++  |||||+++
T Consensus        15 ~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~~~--------------------~l~~~i~~~~~~kpvia~v~   69 (207)
T TIGR00706        15 PEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVASE--------------------EIYEKLKKLKAKKPVVASMG   69 (207)
T ss_pred             HHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHHHH--------------------HHHHHHHHhcCCCCEEEEEC
Confidence            5788999999999999999999863     6777775432                    2233455565  99999999


Q ss_pred             CccccchhhhhccCCeEEEcCCeeEecccc------------cCCCCCC------------------hhHHH--------
Q 015014          174 GVTMGFGIGISGHGRYRIVTEKTLLAMPEN------------GIGLFPD------------------VGFSY--------  215 (414)
Q Consensus       174 G~a~GgG~~Lala~D~ria~~~a~f~~pe~------------~~Gl~P~------------------~g~~~--------  215 (414)
                      |.|.|+|+.|+++||.+++++++.|+..-+            ++|+-+.                  .-.-.        
T Consensus        70 g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~  149 (207)
T TIGR00706        70 GVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNE  149 (207)
T ss_pred             CccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999987765332            2333110                  00000        


Q ss_pred             ----HH---h--hCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHH
Q 015014          216 ----IA---A--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGS  260 (414)
Q Consensus       216 ----~L---~--r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~  260 (414)
                          ++   .  |-+... . .+=++.|+.++ +++|++.||||++...+++.+
T Consensus       150 ~~~~f~~~va~~R~~~~~-~-~~~~~~~~~~~-~~~A~~~gLvD~i~~~~~~~~  200 (207)
T TIGR00706       150 SYEQFVQVVAKGRNLPVE-D-VKKFADGRVFT-GRQALKLRLVDKLGTEDDALK  200 (207)
T ss_pred             HHHHHHHHHHhcCCCCHH-H-HHHHhcCCccc-HHHHHHcCCCcccCCHHHHHH
Confidence                11   1  222221 1 22347889999 999999999999986655543

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.19  E-value=2.2e-10  Score=103.89  Aligned_cols=135  Identities=16%  Similarity=0.157  Sum_probs=95.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEE
Q 015014           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYI  169 (414)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvI  169 (414)
                      .+++.+...+.+.|+.+++++ +..|||.=..     .|+++...                    ..+...|..+++|||
T Consensus         9 ~I~~~~~~~l~~~l~~a~~~~-~~~ivl~ins-----pGG~v~~~--------------------~~I~~~l~~~~~pvv   62 (178)
T cd07021           9 EIDPGLAAFVERALKEAKEEG-ADAVVLDIDT-----PGGRVDSA--------------------LEIVDLILNSPIPTI   62 (178)
T ss_pred             EECHHHHHHHHHHHHHHHhCC-CCeEEEEEEC-----cCCCHHHH--------------------HHHHHHHHhCCCCEE
Confidence            466778888999999999886 6777775322     23444322                    234557888999999


Q ss_pred             EEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhH--------HHH------HhhCCCcHH-HHHHHHhcC
Q 015014          170 SLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF--------SYI------AAKGPGGGS-VGAYLGMTG  234 (414)
Q Consensus       170 AavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~--------~~~------L~r~~G~~~-~a~~l~ltG  234 (414)
                      +.|+|.|.|+|+.++++||++++++++.|+.+++-.+    .|+        +..      +.+.-|+.. .+..|+--.
T Consensus        63 a~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~~----~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~  138 (178)
T cd07021          63 AYVNDRAASAGALIALAADEIYMAPGATIGAAEPIPG----DGNGAADEKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKD  138 (178)
T ss_pred             EEECCchHHHHHHHHHhCCeEEECCCCeEecCeeEcC----CCccchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhh
Confidence            9999999999999999999999999999998855422    222        111      222334321 344444433


Q ss_pred             -------------CCCCcHHHHHHcCccceecCC
Q 015014          235 -------------KRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       235 -------------~~i~~a~eA~~~GLv~~vv~~  255 (414)
                                   -.++ ++||++.|++|.++++
T Consensus       139 ~~v~~~~~~~~~~l~lt-a~eA~~~g~~d~ia~~  171 (178)
T cd07021         139 IEVPGVGIKGGELLTLT-ADEALKVGYAEGIAGS  171 (178)
T ss_pred             cccccccccccceeeeC-HHHHHHhCCeEEEECC
Confidence                         2699 9999999999999864

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.15  E-value=2.5e-10  Score=107.32  Aligned_cols=89  Identities=11%  Similarity=0.055  Sum_probs=74.0

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEEE
Q 015014           91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS  170 (414)
Q Consensus        91 l~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA  170 (414)
                      -+..++.+|.+.|+.+..|+.|++|||+..+ ..| ++.++.++..                    .+..+...+|||||
T Consensus        26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s-~gg-~~~~~~el~~--------------------~i~~~~~~~kpVia   83 (222)
T cd07018          26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDG-LSG-GLAKLEELRQ--------------------ALERFRASGKPVIA   83 (222)
T ss_pred             cCCccHHHHHHHHHHHhcCCCeEEEEEECCC-CCC-CHHHHHHHHH--------------------HHHHHHHhCCeEEE
Confidence            3457789999999999999999999999987 455 7777766533                    33345667999999


Q ss_pred             EECCccccchhhhhccCCeEEEcCCeeEeccc
Q 015014          171 LMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  202 (414)
Q Consensus       171 avnG~a~GgG~~Lala~D~ria~~~a~f~~pe  202 (414)
                      .++| |.+||+.|+++||.+++.+.+.|+..-
T Consensus        84 ~~~~-~~sggy~lasaad~I~a~p~~~vg~iG  114 (222)
T cd07018          84 YADG-YSQGQYYLASAADEIYLNPSGSVELTG  114 (222)
T ss_pred             EeCC-CCchhhhhhhhCCEEEECCCceEEeec
Confidence            9998 889999999999999999999988753

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.90  E-value=2.3e-09  Score=104.99  Aligned_cols=172  Identities=16%  Similarity=0.119  Sum_probs=143.7

Q ss_pred             CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHH
Q 015014           75 NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAE  154 (414)
Q Consensus        75 ~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~  154 (414)
                      -+++.+.|+ |+. |..|.++..+|..-++.++.+..+++.++++...+.|++|.|..++.-.     .......++.++
T Consensus        65 ~~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg-----~h~fspa~~m~L  137 (380)
T KOG1683|consen   65 TGFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVG-----MHFFSPAHWMQL  137 (380)
T ss_pred             cccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcc-----ccccCHHHHHHH
Confidence            378888898 775 9999999999999999999999889999999888899999999987752     234455688889


Q ss_pred             HHHHHHHhhCCCcEEEEECCccccch--hhhhccCCeEEEcC--CeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHH
Q 015014          155 YSLICKISEYKKPYISLMDGVTMGFG--IGISGHGRYRIVTE--KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYL  230 (414)
Q Consensus       155 ~~l~~~l~~~~kPvIAavnG~a~GgG--~~Lala~D~ria~~--~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l  230 (414)
                      .+++....+++.|+.+++||++--||  |-++.+|+|++...  .-..+..+...++.-+..-.-.+....|.. .+..-
T Consensus       138 lEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~-~g~~~  216 (380)
T KOG1683|consen  138 LEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFR-VGERA  216 (380)
T ss_pred             HHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCcc-ccHHH
Confidence            99999999999999999999999998  99999999999984  444567888888544343344445566776 77777


Q ss_pred             HhcCCCCCcHHHHHHcCccceecCC
Q 015014          231 GMTGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       231 ~ltG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      +--|.-++ .+||++-|+++++.|.
T Consensus       217 L~d~~gfd-v~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  217 LADGVGFD-VAEALAVGLGDEIGPR  240 (380)
T ss_pred             HhhccCcc-HHHHHhhccchhccch
Confidence            77788898 9999999999999985

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.60  E-value=9.1e-07  Score=79.69  Aligned_cols=139  Identities=14%  Similarity=0.157  Sum_probs=97.2

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEE
Q 015014           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYI  169 (414)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvI  169 (414)
                      .++..+..-|.+.++.++++ .++.|+|.=.     |-|+++....                    .++..|...++||+
T Consensus         9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v~~~~--------------------~I~~~i~~~~~pvv   62 (172)
T cd07015           9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADAAG--------------------NIVQRIQQSKIPVI   62 (172)
T ss_pred             EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCHHHHH--------------------HHHHHHHhcCcCEE
Confidence            35667778888899988875 4688777532     2344443221                    23345667899999


Q ss_pred             EEEC---CccccchhhhhccCCeEEEcCCeeEecccccCCCCCC----h---h-HHHH------HhhCCCcH-HHHHHHH
Q 015014          170 SLMD---GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD----V---G-FSYI------AAKGPGGG-SVGAYLG  231 (414)
Q Consensus       170 Aavn---G~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~----~---g-~~~~------L~r~~G~~-~~a~~l~  231 (414)
                      +.|+   |.|..+|.-++++||.+++.+++.++...+-.|..+.    .   - .+..      +.+.-|+. ..+..++
T Consensus        63 ~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v  142 (172)
T cd07015          63 IYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFI  142 (172)
T ss_pred             EEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            9999   9999999999999999999999999987775433220    0   0 0111      12222321 1556667


Q ss_pred             hcCCCCCcHHHHHHcCccceecCC
Q 015014          232 MTGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       232 ltG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      -....++ ++||+++|++|.++..
T Consensus       143 ~~~~~lt-a~EA~~~G~iD~ia~~  165 (172)
T cd07015         143 TKDLSLT-PEEALKYGVIEVVARD  165 (172)
T ss_pred             HhhcCcC-HHHHHHcCCceeeeCC
Confidence            7777899 9999999999999975

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.58  E-value=5.1e-07  Score=80.74  Aligned_cols=136  Identities=14%  Similarity=0.069  Sum_probs=90.6

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEEE
Q 015014           91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS  170 (414)
Q Consensus        91 l~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA  170 (414)
                      ++..+.+++.+.|..++.++..+.|+|.=.     |.|+++..-                    ..++..|...++|+++
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v~~~--------------------~~i~~~i~~~~~~v~~   63 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDVFAG--------------------MAIYDTIKFIKADVVT   63 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcHHHH--------------------HHHHHHHHhcCCCceE
Confidence            467888999999999998877777776532     223443211                    1344567778999999


Q ss_pred             EECCccccchhhhhccCC--eEEEcCCeeEecccccCCCCCChhHHH---------------HHhhCCCcH-HHHHHHHh
Q 015014          171 LMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAKGPGGG-SVGAYLGM  232 (414)
Q Consensus       171 avnG~a~GgG~~Lala~D--~ria~~~a~f~~pe~~~Gl~P~~g~~~---------------~L~r~~G~~-~~a~~l~l  232 (414)
                      .+.|.|.++|.-|+++||  .|++.+++.|.+....-|......-..               .+.+.-|.. ..-.+++-
T Consensus        64 ~~~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~  143 (162)
T cd07013          64 IIDGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLE  143 (162)
T ss_pred             EEEeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence            999999999999999999  688888888876554322211100000               122222321 13344555


Q ss_pred             cCCCCCcHHHHHHcCcccee
Q 015014          233 TGKRISTPSDALFAGLGTDY  252 (414)
Q Consensus       233 tG~~i~~a~eA~~~GLv~~v  252 (414)
                      .+.-++ |+||+++||||++
T Consensus       144 ~~~~~s-a~eA~~~GliD~i  162 (162)
T cd07013         144 RDTWLS-AREAVEYGFADTI  162 (162)
T ss_pred             CCcccc-HHHHHHcCCCCcC
Confidence            556668 9999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>PRK10949 protease 4; Provisional

Probab=98.51  E-value=3.1e-06  Score=90.60  Aligned_cols=163  Identities=17%  Similarity=0.127  Sum_probs=103.2

Q ss_pred             cCcEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchH
Q 015014           74 PNGVAVITLDRP-----KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP  148 (414)
Q Consensus        74 ~~~V~~Itlnrp-----~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~  148 (414)
                      ++.|++|.++-+     ...+.++.   +.+.+.|+.+.+|++|++|||+-..|     |+....               
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp-----GGs~~a---------------  381 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP-----GGSVTA---------------  381 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC-----CCcHHH---------------
Confidence            467888888632     22234544   45677788999999999999986543     222211               


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccc------------cCCCCCChhHH--
Q 015014          149 KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN------------GIGLFPDVGFS--  214 (414)
Q Consensus       149 ~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~------------~~Gl~P~~g~~--  214 (414)
                        ....++.+.+++...||||+.+.|.|..||.-++++||.++|.+.+..+---+            ++|+-++...+  
T Consensus       382 --se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~  459 (618)
T PRK10949        382 --SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSP  459 (618)
T ss_pred             --HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccc
Confidence              11222334456667899999999999999999999999999999764433111            24432221100  


Q ss_pred             ---------------------------HHHh-----hCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHH
Q 015014          215 ---------------------------YIAA-----KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLK  262 (414)
Q Consensus       215 ---------------------------~~L~-----r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~  262 (414)
                                                 .|+.     |-+... . .+-+..|+.++ +++|++.||||++-.-++....+
T Consensus       460 ~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~-~-v~~ia~Grv~t-g~~A~~~GLVD~lG~~~~ai~~a  536 (618)
T PRK10949        460 LADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPE-Q-IDKIAQGHVWT-GQDAKANGLVDSLGDFDDAVAKA  536 (618)
T ss_pred             cCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH-H-HHHHhcCCccc-HHHHHHcCCCccCCCHHHHHHHH
Confidence                                       0111     112221 1 23357899999 99999999999996644444333


Q ss_pred             HH
Q 015014          263 EA  264 (414)
Q Consensus       263 ~~  264 (414)
                      .+
T Consensus       537 ~~  538 (618)
T PRK10949        537 AE  538 (618)
T ss_pred             HH
Confidence            33

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.43  E-value=1.6e-06  Score=80.27  Aligned_cols=139  Identities=13%  Similarity=0.033  Sum_probs=88.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCC
Q 015014           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK  166 (414)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~v~~vVl--~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k  166 (414)
                      ..++..+.+.+...|..++.++..+-|+|  .+.|       +|+..-                    ..++..|...+.
T Consensus        38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG-------G~v~~g--------------------~~I~d~i~~~~~   90 (200)
T PRK00277         38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG-------GSVTAG--------------------LAIYDTMQFIKP   90 (200)
T ss_pred             CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC-------CcHHHH--------------------HHHHHHHHhcCC
Confidence            44778899999999998886544343433  3333       343221                    123445677788


Q ss_pred             cEEEEECCccccchhhhhccCC--eEEEcCCeeEecccccCCCCCChhH---------------HHHHhhCCCcH-HHHH
Q 015014          167 PYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGF---------------SYIAAKGPGGG-SVGA  228 (414)
Q Consensus       167 PvIAavnG~a~GgG~~Lala~D--~ria~~~a~f~~pe~~~Gl~P~~g~---------------~~~L~r~~G~~-~~a~  228 (414)
                      |+++.+.|.|.++|..|+++++  .|++.++++|.+....-|......-               ...+...-|.. ....
T Consensus        91 ~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~  170 (200)
T PRK00277         91 DVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIE  170 (200)
T ss_pred             CEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence            9999999999999999998754  5777777777665543221100000               01122223321 1344


Q ss_pred             HHHhcCCCCCcHHHHHHcCccceecCC
Q 015014          229 YLGMTGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       229 ~l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      .++-.+.-++ |+||++.||||+|+..
T Consensus       171 ~~~~~~~~ls-a~EA~e~GliD~Ii~~  196 (200)
T PRK00277        171 KDTDRDNFMS-AEEAKEYGLIDEVLTK  196 (200)
T ss_pred             HHhhCCcccc-HHHHHHcCCccEEeec
Confidence            5555666788 9999999999999975

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.28  E-value=1e-05  Score=75.28  Aligned_cols=139  Identities=14%  Similarity=0.051  Sum_probs=96.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcE
Q 015014           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (414)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPv  168 (414)
                      ..++..+..++...|..++..+..+.|+|.=.     |.|+++..-                    ..++..|..++.|+
T Consensus        42 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v~~g--------------------~~I~d~i~~~~~~v   96 (207)
T PRK12553         42 GQVDDASANDVMAQLLVLESIDPDRDITLYIN-----SPGGSVTAG--------------------DAIYDTIQFIRPDV   96 (207)
T ss_pred             ceECHHHHHHHHHHHHHHHhCCCCCCEEEEEe-----CCCCcHHHH--------------------HHHHHHHHhcCCCc
Confidence            34778999999999999987653444444321     223443321                    13444677788899


Q ss_pred             EEEECCccccchhhhhccCC--eEEEcCCeeEecccccC-CCCCChhH------------------HHHHhhCCCcH-HH
Q 015014          169 ISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGI-GLFPDVGF------------------SYIAAKGPGGG-SV  226 (414)
Q Consensus       169 IAavnG~a~GgG~~Lala~D--~ria~~~a~f~~pe~~~-Gl~P~~g~------------------~~~L~r~~G~~-~~  226 (414)
                      ++.+.|.|.+.|.-|+++||  .|++.+++.|.+..... |..  .|-                  ...+.+.-|.. ..
T Consensus        97 ~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~--~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~  174 (207)
T PRK12553         97 QTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGI--RGQASDLEIQAREILRMRERLERILAEHTGQSVEK  174 (207)
T ss_pred             EEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            99999999999999999999  59999999999877653 211  111                  11223333432 14


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCC
Q 015014          227 GAYLGMTGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      ..+++-.+.-++ |+||+++||||+|++.
T Consensus       175 i~~~~~~~~~lt-a~EA~e~GliD~I~~~  202 (207)
T PRK12553        175 IRKDTDRDKWLT-AEEAKDYGLVDQIITS  202 (207)
T ss_pred             HHHHHhcCcccc-HHHHHHcCCccEEcCc
Confidence            455666778898 9999999999999975

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.26  E-value=0.00027  Score=67.71  Aligned_cols=139  Identities=18%  Similarity=0.133  Sum_probs=93.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCc
Q 015014           88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (414)
Q Consensus        88 ~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP  167 (414)
                      .-+++++-.+...+.++.+++.. +-+|-|.-. ++++. |.+-.+              .-........+..+....+|
T Consensus        76 ~G~~~~~g~rKa~R~~~lA~~~~-lPvV~lvDt-pGa~~-g~~aE~--------------~G~~~~ia~~~~~~s~~~VP  138 (256)
T PRK12319         76 FGQPHPEGYRKALRLMKQAEKFG-RPVVTFINT-AGAYP-GVGAEE--------------RGQGEAIARNLMEMSDLKVP  138 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEEC-CCcCC-CHhHHh--------------ccHHHHHHHHHHHHhCCCCC
Confidence            35688888999988888887653 455555433 24553 332110              00223344566678889999


Q ss_pred             EEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcC
Q 015014          168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG  247 (414)
Q Consensus       168 vIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~G  247 (414)
                      +|+.|-|.|.|||.-....||++++.+++.|+.       .++-|.+..+-+--.....+.+.+    .++ +.++.+.|
T Consensus       139 ~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~~~a~~aa~~~----~~~-a~~l~~~g  206 (256)
T PRK12319        139 IIAIIIGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDGSRATEAAELM----KIT-AGELLEMG  206 (256)
T ss_pred             EEEEEeCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCcccHHHHHHHc----CCC-HHHHHHCC
Confidence            999999999988888888999999999988764       333344444433222211333433    778 99999999


Q ss_pred             ccceecCC
Q 015014          248 LGTDYVPS  255 (414)
Q Consensus       248 Lv~~vv~~  255 (414)
                      +||+|+|.
T Consensus       207 ~iD~ii~e  214 (256)
T PRK12319        207 VVDKVIPE  214 (256)
T ss_pred             CCcEecCC
Confidence            99999985

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.24  E-value=9.4e-06  Score=73.22  Aligned_cols=136  Identities=15%  Similarity=0.049  Sum_probs=93.3

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEEE
Q 015014           91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS  170 (414)
Q Consensus        91 l~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA  170 (414)
                      ++.++..++...+..++.++..+.|+|.=.     |.|+|+..-                    ..++..|...+.|+++
T Consensus        18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in-----SpGG~v~~~--------------------~~i~~~l~~~~~~v~t   72 (171)
T cd07017          18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN-----SPGGSVTAG--------------------LAIYDTMQYIKPPVST   72 (171)
T ss_pred             EcHHHHHHHHHHHHHHHccCCCCceEEEEE-----CCCCCHHHH--------------------HHHHHHHHhcCCCEEE
Confidence            567888999999999988766555555322     123343321                    1234456677999999


Q ss_pred             EECCccccchhhhhccCC--eEEEcCCeeEecccccCCCCCChhH---------------HHHHhhCCCcH-HHHHHHHh
Q 015014          171 LMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGF---------------SYIAAKGPGGG-SVGAYLGM  232 (414)
Q Consensus       171 avnG~a~GgG~~Lala~D--~ria~~~a~f~~pe~~~Gl~P~~g~---------------~~~L~r~~G~~-~~a~~l~l  232 (414)
                      .+.|.|.++|.-+++++|  .|++.+++.|.+.+...+..-...-               ...+...-|.. ..-..++-
T Consensus        73 ~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~  152 (171)
T cd07017          73 ICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD  152 (171)
T ss_pred             EEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence            999999999999999999  7999999999988876554322110               00112222322 13445556


Q ss_pred             cCCCCCcHHHHHHcCcccee
Q 015014          233 TGKRISTPSDALFAGLGTDY  252 (414)
Q Consensus       233 tG~~i~~a~eA~~~GLv~~v  252 (414)
                      .+.-++ |+||+++||+|+|
T Consensus       153 ~~~~lt-a~EA~e~GiiD~V  171 (171)
T cd07017         153 RDRYMS-AEEAKEYGLIDKI  171 (171)
T ss_pred             CCcccc-HHHHHHcCCCccC
Confidence            777788 9999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=98.24  E-value=0.00022  Score=70.05  Aligned_cols=139  Identities=13%  Similarity=0.067  Sum_probs=92.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCc
Q 015014           88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (414)
Q Consensus        88 ~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP  167 (414)
                      .-+++++-.+...+.++.+++.. +-+|-|.-. +++++ |.+-.+..              ........+..+....+|
T Consensus       132 ~G~~~p~g~rKa~Rlm~lA~~f~-lPIItlvDT-pGA~~-G~~AE~~G--------------~~~aiar~l~~~a~~~VP  194 (322)
T CHL00198        132 FGMPSPGGYRKALRLMKHANKFG-LPILTFIDT-PGAWA-GVKAEKLG--------------QGEAIAVNLREMFSFEVP  194 (322)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC-CCcCc-CHHHHHHh--------------HHHHHHHHHHHHHcCCCC
Confidence            45688999999999998887753 444444333 24554 43221100              122233455567889999


Q ss_pred             EEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcC
Q 015014          168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG  247 (414)
Q Consensus       168 vIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~G  247 (414)
                      +|++|-|.|.|||.-....||++++.+++.|+.       +++-|.+..|-+--   +++.+. ....+++ |++.++.|
T Consensus       195 ~IsVViGeggsGGAlal~~aD~V~m~e~a~~sV-------isPEg~a~Il~~d~---~~a~~a-A~~~~it-a~dL~~~g  262 (322)
T CHL00198        195 IICTIIGEGGSGGALGIGIGDSIMMLEYAVYTV-------ATPEACAAILWKDS---KKSLDA-AEALKIT-SEDLKVLG  262 (322)
T ss_pred             EEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEe-------cCHHHHHHHHhcch---hhHHHH-HHHcCCC-HHHHHhCC
Confidence            999999999888865555699999999998874       33334444443332   244443 3456899 99999999


Q ss_pred             ccceecCC
Q 015014          248 LGTDYVPS  255 (414)
Q Consensus       248 Lv~~vv~~  255 (414)
                      +||+|+|.
T Consensus       263 iiD~ii~E  270 (322)
T CHL00198        263 IIDEIIPE  270 (322)
T ss_pred             CCeEeccC
Confidence            99999984

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=98.16  E-value=0.00041  Score=68.13  Aligned_cols=139  Identities=15%  Similarity=0.079  Sum_probs=91.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCc
Q 015014           88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (414)
Q Consensus        88 ~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP  167 (414)
                      .-+++++-.+...+.++.+++- .+-+|-|.-. +++++ |.+-.+..              ......+.+..+....+|
T Consensus       129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDT-pGa~~-g~~aE~~G--------------~~~aia~~l~a~s~~~VP  191 (316)
T TIGR00513       129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDT-PGAYP-GIGAEERG--------------QSEAIARNLREMARLGVP  191 (316)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEEC-CCCCC-CHHHHHHH--------------HHHHHHHHHHHHHcCCCC
Confidence            3568888999998888888764 3555555433 23443 43322111              123334566678889999


Q ss_pred             EEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcC
Q 015014          168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG  247 (414)
Q Consensus       168 vIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~G  247 (414)
                      +|++|-|.|.|||.--...||++++.+++.++       ++++-|+...|-+-..   ++.+..- -..++ +.++++.|
T Consensus       192 ~IsVViGeggsGGAla~~~aD~v~m~~~a~~s-------VisPEg~a~Il~kd~~---~a~~aae-~~~~t-a~~l~~~G  259 (316)
T TIGR00513       192 VICTVIGEGGSGGALAIGVGDKVNMLEYSTYS-------VISPEGCAAILWKDAS---KAPKAAE-AMKIT-APDLKELG  259 (316)
T ss_pred             EEEEEecccccHHHhhhccCCEEEEecCceEE-------ecCHHHHHHHhccchh---hHHHHHH-HccCC-HHHHHHCC
Confidence            99999999977777555569999999998776       3344444444433221   2222222 36788 99999999


Q ss_pred             ccceecCC
Q 015014          248 LGTDYVPS  255 (414)
Q Consensus       248 Lv~~vv~~  255 (414)
                      +||.|+|.
T Consensus       260 ~iD~II~e  267 (316)
T TIGR00513       260 LIDSIIPE  267 (316)
T ss_pred             CCeEeccC
Confidence            99999984

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.12  E-value=4.3e-05  Score=70.49  Aligned_cols=139  Identities=16%  Similarity=0.042  Sum_probs=89.6

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEEE
Q 015014           91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS  170 (414)
Q Consensus        91 l~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA  170 (414)
                      ++..+...+...|..++..+..+.|+|.=.     |-|+++..-                    ..++..|...+.||++
T Consensus        32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v~ag--------------------~aI~d~i~~~~~~V~t   86 (197)
T PRK14512         32 INKDLSELFQEKILLLEALDSKKPIFVYID-----SEGGDIDAG--------------------FAIFNMIRFVKPKVFT   86 (197)
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE-----CCCCCHHHH--------------------HHHHHHHHhCCCCEEE
Confidence            667888899998888876333344444321     223444321                    1344467778999999


Q ss_pred             EECCccccchhhhhccCCe--EEEcCCeeEecccccCCCCCChhHHH---------------HHhhCCCcH-HHHHHHHh
Q 015014          171 LMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAKGPGGG-SVGAYLGM  232 (414)
Q Consensus       171 avnG~a~GgG~~Lala~D~--ria~~~a~f~~pe~~~Gl~P~~g~~~---------------~L~r~~G~~-~~a~~l~l  232 (414)
                      .+.|.|.+.|.-|+++||-  |++.++++|.+....-|+.....-..               .+...-|.. .....++-
T Consensus        87 ~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~  166 (197)
T PRK14512         87 IGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTD  166 (197)
T ss_pred             EEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhh
Confidence            9999999999999999985  99999999876555433311111000               111122321 13334444


Q ss_pred             cCCCCCcHHHHHHcCccceecCC
Q 015014          233 TGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       233 tG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      ....++ |+||+++||+|+|++.
T Consensus       167 ~d~~lt-a~EA~~yGliD~I~~~  188 (197)
T PRK14512        167 RDFWLD-SSSAVKYGLVFEVVET  188 (197)
T ss_pred             cCcccC-HHHHHHcCCccEeecC
Confidence            455688 9999999999999975

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=98.10  E-value=0.00077  Score=67.99  Aligned_cols=138  Identities=16%  Similarity=0.095  Sum_probs=90.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcE
Q 015014           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (414)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPv  168 (414)
                      .+++++-.+...+.++.+++.. +=+|-|.-.. +++ .|.+-.+..              ........+..+....+|+
T Consensus       200 G~~~peGyRKAlR~mklAekf~-lPIVtLVDTp-GA~-pG~~AEe~G--------------qa~aIAr~l~ams~l~VPi  262 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEKFG-FPILTFVDTP-GAY-AGIKAEELG--------------QGEAIAFNLREMFGLRVPI  262 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC-CcC-CCHHHHHHh--------------HHHHHHHHHHHHhcCCCCE
Confidence            4688999999999998887653 4555444332 344 343332211              2233445666788999999


Q ss_pred             EEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcCc
Q 015014          169 ISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL  248 (414)
Q Consensus       169 IAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GL  248 (414)
                      |+.|-|.+.|||.-...+||+++|.+++.++.       .++-|.+..|-+--.....+.+    ...++ |+++++.|+
T Consensus       263 ISVViGeGgSGGAlalg~aD~VlMle~A~ysV-------isPEgaAsILwkd~~~A~eAAe----alkit-A~dL~~~Gi  330 (431)
T PLN03230        263 IATVIGEGGSGGALAIGCGNRMLMMENAVYYV-------ASPEACAAILWKSAAAAPKAAE----ALRIT-AAELVKLGV  330 (431)
T ss_pred             EEEEeCCCCcHHHHHhhcCCEEEEecCCEEEe-------cCHHHHHHHHhccccchHHHHH----HcCCC-HHHHHhCCC
Confidence            99999999666655455789999999987653       3333444444332221113333    34899 999999999


Q ss_pred             cceecCC
Q 015014          249 GTDYVPS  255 (414)
Q Consensus       249 v~~vv~~  255 (414)
                      ||+|+|.
T Consensus       331 ID~II~E  337 (431)
T PLN03230        331 VDEIVPE  337 (431)
T ss_pred             CeEeccC
Confidence            9999984

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=98.07  E-value=0.00076  Score=66.32  Aligned_cols=139  Identities=15%  Similarity=0.104  Sum_probs=93.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCc
Q 015014           88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (414)
Q Consensus        88 ~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP  167 (414)
                      .-+++++-.+...+.++.+++- ++-+|-|.-. +++++ |.+-.+-              .........+.++....+|
T Consensus       129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDT-pGa~~-G~~aE~~--------------G~~~aia~~l~~~a~~~VP  191 (319)
T PRK05724        129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDT-PGAYP-GIGAEER--------------GQSEAIARNLREMARLKVP  191 (319)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeC-CCCCC-CHHHHhc--------------cHHHHHHHHHHHHhCCCCC
Confidence            3568889999988888887764 3555555443 24444 4332210              0223344566778899999


Q ss_pred             EEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcC
Q 015014          168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG  247 (414)
Q Consensus       168 vIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~G  247 (414)
                      +|++|-|.|.|||.-....||++++.+++.|+       ++++-|++..|-+-..   .+.+..- ...++ +.++++.|
T Consensus       192 ~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~~~---~a~~aae-~~~it-a~~l~~~g  259 (319)
T PRK05724        192 IICTVIGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKDAS---KAPEAAE-AMKIT-AQDLKELG  259 (319)
T ss_pred             EEEEEeCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcCch---hHHHHHH-HcCCC-HHHHHHCC
Confidence            99999999977777555569999998888765       4444555555544332   3333333 56788 99999999


Q ss_pred             ccceecCC
Q 015014          248 LGTDYVPS  255 (414)
Q Consensus       248 Lv~~vv~~  255 (414)
                      +||.|+|.
T Consensus       260 ~iD~II~E  267 (319)
T PRK05724        260 IIDEIIPE  267 (319)
T ss_pred             CceEeccC
Confidence            99999974

>PRK11778 putative inner membrane peptidase; Provisional

Probab=98.06  E-value=2.8e-05  Score=76.83  Aligned_cols=155  Identities=14%  Similarity=0.064  Sum_probs=93.4

Q ss_pred             cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHH
Q 015014           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA  153 (414)
Q Consensus        74 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (414)
                      .+.|++|.++.+=..+ ....+.+++...+..+..+   .+|||+-..|     |+.+.....                 
T Consensus        89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLridSp-----GG~v~~s~~-----------------  142 (330)
T PRK11778         89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLESP-----GGVVHGYGL-----------------  142 (330)
T ss_pred             CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEeCC-----CCchhHHHH-----------------
Confidence            4678888888542111 1123445666666554433   5677765433     222221100                 


Q ss_pred             HHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHH------------------
Q 015014          154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY------------------  215 (414)
Q Consensus       154 ~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~------------------  215 (414)
                      ....+.++....||+|+.+++.|..||.-++++||-++|.+.+.++.--+-.. .|......                  
T Consensus       143 a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a  221 (330)
T PRK11778        143 AASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRT  221 (330)
T ss_pred             HHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCC
Confidence            00113356677899999999999999999999999999999886665433111 12111100                  


Q ss_pred             -------------------------HH---hhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCH
Q 015014          216 -------------------------IA---AKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL  258 (414)
Q Consensus       216 -------------------------~L---~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l  258 (414)
                                               |+   .+--+ . ...+-+.+|+.+. |++|++.||||++...+++
T Consensus       222 ~~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~-~-l~~~~va~G~v~~-g~~Al~~GLVD~Ig~~dd~  289 (330)
T PRK11778        222 LTLFGENTEEGREKFREELEETHQLFKDFVQRYRP-Q-LDIDKVATGEHWY-GQQALELGLVDEIQTSDDY  289 (330)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-CCHHHHHhCCCcC-HHHHHHCCCCCcCCCHHHH
Confidence                                     11   11111 0 1234467899999 9999999999999876554

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=98.06  E-value=5.6e-05  Score=69.84  Aligned_cols=140  Identities=9%  Similarity=0.044  Sum_probs=94.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCC
Q 015014           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK  166 (414)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~v~~vVl--~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k  166 (414)
                      ..+|.++.+++...|..++.++..+-|.|  -+.|       +|+..                    ...++..+...+.
T Consensus        37 ~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG-------G~v~~--------------------g~aIyd~m~~~~~   89 (200)
T CHL00028         37 QEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG-------GSVIS--------------------GLAIYDTMQFVKP   89 (200)
T ss_pred             CeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC-------cchhh--------------------HHHHHHHHHhcCC
Confidence            34889999999999999885443344433  3443       33321                    1234456778899


Q ss_pred             cEEEEECCccccchhhhhccCC--eEEEcCCeeEecccccCCCCCChhHH----------------HHHhhCCCcH-HHH
Q 015014          167 PYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFS----------------YIAAKGPGGG-SVG  227 (414)
Q Consensus       167 PvIAavnG~a~GgG~~Lala~D--~ria~~~a~f~~pe~~~Gl~P~~g~~----------------~~L~r~~G~~-~~a  227 (414)
                      ||.+.+.|.|.+.|.-|++++|  -|++.++++|.+.....|+.-+...-                ..+.+.-|.. ...
T Consensus        90 ~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i  169 (200)
T CHL00028         90 DVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVI  169 (200)
T ss_pred             CEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            9999999999999999999999  69999999999887765532111110                0111122321 123


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCC
Q 015014          228 AYLGMTGKRISTPSDALFAGLGTDYVPSG  256 (414)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~  256 (414)
                      .+++-...-++ |+||+++||||+|+.+.
T Consensus       170 ~~~~~r~~~lt-a~EA~eyGliD~I~~~~  197 (200)
T CHL00028        170 SEDMERDVFMS-ATEAKAYGIVDLVAVNN  197 (200)
T ss_pred             HHHhhcCccCC-HHHHHHcCCCcEEeecC
Confidence            34445555688 99999999999999754

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.06  E-value=8.6e-06  Score=74.07  Aligned_cols=137  Identities=18%  Similarity=0.127  Sum_probs=88.9

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcE
Q 015014           91 MNLDMDIKYKSFLDEWESDPRVK--CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (414)
Q Consensus        91 l~~~m~~eL~~~l~~~~~d~~v~--~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPv  168 (414)
                      +|.++...+...|..++..+..+  .|.|.+.|       +|+..-                    ..++..|..++.|+
T Consensus        25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG-------G~v~~g--------------------~~i~~~i~~~~~~v   77 (182)
T PF00574_consen   25 IDEESANRLISQLLYLENEDKNKPINIYINSPG-------GDVDAG--------------------LAIYDAIRSSKAPV   77 (182)
T ss_dssp             BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE-------BCHHHH--------------------HHHHHHHHHSSSEE
T ss_pred             cCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC-------CccHHH--------------------HHHHHHHHhcCCCe
Confidence            68899999999888774332222  23344443       444321                    23455788899999


Q ss_pred             EEEECCccccchhhhhccCCe--EEEcCCeeEecccccCCCCCChhHHH---------------HHhhCCCcH-HHHHHH
Q 015014          169 ISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAKGPGGG-SVGAYL  230 (414)
Q Consensus       169 IAavnG~a~GgG~~Lala~D~--ria~~~a~f~~pe~~~Gl~P~~g~~~---------------~L~r~~G~~-~~a~~l  230 (414)
                      ++.+.|.|.+.|.-++++||.  |++.+++.|.+.+...+.........               .+...-|.. ..-.++
T Consensus        78 ~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~  157 (182)
T PF00574_consen   78 TTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEEL  157 (182)
T ss_dssp             EEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred             EEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            999999999999999999999  89999999999888655432111111               111112321 123344


Q ss_pred             HhcCCCCCcHHHHHHcCccceecCC
Q 015014          231 GMTGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       231 ~ltG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      +-...-++ |+||+++||+|+|+..
T Consensus       158 ~~~~~~l~-a~EA~~~GiiD~I~~~  181 (182)
T PF00574_consen  158 MDRDTWLS-AEEALEYGIIDEIIES  181 (182)
T ss_dssp             CSSTEEEE-HHHHHHHTSSSEEESS
T ss_pred             HhCCcccc-HHHHHHcCCCCEeccC
Confidence            44444577 9999999999999853

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=98.05  E-value=0.001  Score=71.10  Aligned_cols=139  Identities=12%  Similarity=0.048  Sum_probs=94.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCc
Q 015014           88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (414)
Q Consensus        88 ~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP  167 (414)
                      .-+++++-++...+.++.++... +-+|-|.=. +++++ |.+..+..              ...........+....+|
T Consensus       220 fG~~~peGyRKAlRlmkLAekfg-LPIVtLVDT-pGA~p-G~~AEe~G--------------q~~aIArnl~amasl~VP  282 (762)
T PLN03229        220 FGMPTPHGYRKALRMMYYADHHG-FPIVTFIDT-PGAYA-DLKSEELG--------------QGEAIAHNLRTMFGLKVP  282 (762)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEEC-CCcCC-CchhHHHh--------------HHHHHHHHHHHHhCCCCC
Confidence            34678888888888888887653 444444332 24554 33332211              122334556677889999


Q ss_pred             EEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcC
Q 015014          168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG  247 (414)
Q Consensus       168 vIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~G  247 (414)
                      +|++|-|.|.|||.-....||+++|.+++.|+       +.++-|++..|-+-..   ++.+ +.....|+ |++.++.|
T Consensus       283 ~ISVViGeggSGGAlA~g~aD~VlMle~A~~s-------VisPEgaAsILwkd~~---~A~e-AAe~lkiT-a~dL~~lG  350 (762)
T PLN03229        283 IVSIVIGEGGSGGALAIGCANKLLMLENAVFY-------VASPEACAAILWKSAK---AAPK-AAEKLRIT-AQELCRLQ  350 (762)
T ss_pred             EEEEEeCCcchHHHHHhhcCCEEEEecCCeEE-------ecCHHHHHHHHhcCcc---cHHH-HHHHcCCC-HHHHHhCC
Confidence            99999999988887777789999999988755       3444455555544432   3333 34457899 99999999


Q ss_pred             ccceecCC
Q 015014          248 LGTDYVPS  255 (414)
Q Consensus       248 Lv~~vv~~  255 (414)
                      +||.|+|.
T Consensus       351 iiD~IIpE  358 (762)
T PLN03229        351 IADGIIPE  358 (762)
T ss_pred             CCeeeccC
Confidence            99999984

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.99  E-value=7.7e-05  Score=73.90  Aligned_cols=136  Identities=18%  Similarity=0.147  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCc
Q 015014           96 DIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGV  175 (414)
Q Consensus        96 ~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~  175 (414)
                      .+.+.+.++.+..|+.+++|||.=..|     |+....                 ....++.+.++..-. ||++.|+++
T Consensus        82 ~~~~~~~l~~~~~~~~vk~vvL~inSP-----GG~v~a-----------------s~~i~~~l~~l~~~~-PV~v~v~~~  138 (317)
T COG0616          82 GDDIEEILRAARADPSVKAVVLRINSP-----GGSVVA-----------------SELIARALKRLRAKK-PVVVSVGGY  138 (317)
T ss_pred             HHHHHHHHHHHhcCCCCceEEEEEECc-----CCchhH-----------------HHHHHHHHHHHhhcC-CEEEEECCe
Confidence            445566688888999999999864322     222211                 112233444455444 999999999


Q ss_pred             cccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHH----------------------------------------
Q 015014          176 TMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY----------------------------------------  215 (414)
Q Consensus       176 a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~----------------------------------------  215 (414)
                      |..||..+|++||.+||++.+..|=--+..+ .|......                                        
T Consensus       139 AASGGY~IA~aAd~I~a~p~si~GSIGVi~~-~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~  217 (317)
T COG0616         139 AASGGYYIALAADKIVADPSSITGSIGVISG-APNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDET  217 (317)
T ss_pred             ecchhhhhhccCCEEEecCCceeeeceeEEe-cCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999886653333222 12221111                                        


Q ss_pred             ------HHhhCCC-cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCC
Q 015014          216 ------IAAKGPG-GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGN  257 (414)
Q Consensus       216 ------~L~r~~G-~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~  257 (414)
                            .+..--+ .. ....-+.+|+-++ +++|++.||||++...++
T Consensus       218 y~~F~~~V~~~R~~~~-~~~~~~a~g~v~~-g~~A~~~gLVDelg~~~~  264 (317)
T COG0616         218 YDEFVDKVAEGRGLSD-EAVDKLATGRVWT-GQQALELGLVDELGGLDD  264 (317)
T ss_pred             HHHHHHHHHhcCCCCh-hHHHHHhccceec-HHHhhhcCCchhcCCHHH
Confidence                  0110001 11 2234678899999 999999999999975433

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=97.97  E-value=0.00012  Score=67.34  Aligned_cols=140  Identities=14%  Similarity=-0.002  Sum_probs=90.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcE
Q 015014           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (414)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPv  168 (414)
                      ..++..+...+...|..++.++..+-|+|.=.     |.|+|+..-                    ..++..|...+.|+
T Consensus        33 g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~In-----SpGG~v~~g--------------------~~I~d~l~~~~~~v   87 (191)
T TIGR00493        33 GEVNDSVANLIVAQLLFLEAEDPEKDIYLYIN-----SPGGSITAG--------------------LAIYDTMQFIKPDV   87 (191)
T ss_pred             cEEChHHHHHHHHHHHHhhccCCCCCEEEEEE-----CCCCCHHHH--------------------HHHHHHHHhcCCCE
Confidence            34667788888888888886554444444322     124444321                    12334566677788


Q ss_pred             EEEECCccccchhhhhccCC--eEEEcCCeeEecccccCCCCCChhHH---------------HHHhhCCCcH-HHHHHH
Q 015014          169 ISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFS---------------YIAAKGPGGG-SVGAYL  230 (414)
Q Consensus       169 IAavnG~a~GgG~~Lala~D--~ria~~~a~f~~pe~~~Gl~P~~g~~---------------~~L~r~~G~~-~~a~~l  230 (414)
                      ...+.|.|.+.|.-|++++|  .|++.+++.|.+.+..-|......-.               ..+.+.-|.. ....++
T Consensus        88 ~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~  167 (191)
T TIGR00493        88 STICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKD  167 (191)
T ss_pred             EEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            88889999999999998766  69999999999876653332111111               0122223321 144455


Q ss_pred             HhcCCCCCcHHHHHHcCccceecC
Q 015014          231 GMTGKRISTPSDALFAGLGTDYVP  254 (414)
Q Consensus       231 ~ltG~~i~~a~eA~~~GLv~~vv~  254 (414)
                      +-.+..++ |+||+++||+|+++.
T Consensus       168 ~~~~~~lt-a~EA~~~GliD~ii~  190 (191)
T TIGR00493       168 TERDFFMS-AEEAKEYGLIDSVLT  190 (191)
T ss_pred             hhCCccCc-HHHHHHcCCccEEec
Confidence            66666788 999999999999974

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=97.97  E-value=0.00021  Score=68.19  Aligned_cols=110  Identities=15%  Similarity=0.159  Sum_probs=83.5

Q ss_pred             cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHH
Q 015014           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA  153 (414)
Q Consensus        74 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (414)
                      ++.+..+.+  |- .+-++.+..+++.++++...++..+ .++|...|       +++.                    .
T Consensus        58 qe~~~~~gi--Pi-~~~I~i~dse~v~raI~~~~~~~~I-dLii~TpG-------G~v~--------------------A  106 (285)
T PF01972_consen   58 QERVSFLGI--PI-YRYIDIDDSEFVLRAIREAPKDKPI-DLIIHTPG-------GLVD--------------------A  106 (285)
T ss_pred             ccccceecc--cc-ceeEcHhhHHHHHHHHHhcCCCCce-EEEEECCC-------CcHH--------------------H
Confidence            444555444  33 3678889999999999988777655 34455444       2322                    1


Q ss_pred             HHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHH
Q 015014          154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS  214 (414)
Q Consensus       154 ~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~  214 (414)
                      ..++...+.+.+.|+++.|+..|+.||.-+|++||-+++.+.+.+|--+.++|-.|..+-.
T Consensus       107 A~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~sil  167 (285)
T PF01972_consen  107 AEQIARALREHPAKVTVIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAASIL  167 (285)
T ss_pred             HHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHHHH
Confidence            1245557888999999999999999999999999999999999999999999998865443

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=97.83  E-value=0.0011  Score=64.11  Aligned_cols=152  Identities=15%  Similarity=0.075  Sum_probs=92.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESD----PRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFT  152 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d----~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  152 (414)
                      |.++-.+.--..-++....-+.+..+++.+.+|    ..+-+|.|.-+| ++     .+.+-..         .+. ...
T Consensus        61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg-Ga-----RlqEg~~---------~L~-~~a  124 (274)
T TIGR03133        61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG-GV-----RLQEANA---------GLI-AIA  124 (274)
T ss_pred             EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC-Cc-----ChhhhHH---------HHH-HHH
Confidence            555555554455688888888999999888651    113455554443 23     3322110         000 111


Q ss_pred             HHHHHHHHHhhCCCcEEEEECCc--cccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH-HHHHH
Q 015014          153 AEYSLICKISEYKKPYISLMDGV--TMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG-SVGAY  229 (414)
Q Consensus       153 ~~~~l~~~l~~~~kPvIAavnG~--a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~-~~a~~  229 (414)
                      ..+..+..+... .|+|+++-|.  |.||+..++..||++|+++++++++.-           ...+....|.. --..+
T Consensus       125 ~i~~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aG-----------P~VIe~~~G~e~~~~~d  192 (274)
T TIGR03133       125 EIMRAILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSG-----------PEVIEQEAGVEEFDSRD  192 (274)
T ss_pred             HHHHHHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccC-----------HHHHHHhcCCCccCHHH
Confidence            112223344444 9999999999  899999999999999999988777521           11122222310 01233


Q ss_pred             HHhcCCCCCcHHHHHHcCccceecCCCC
Q 015014          230 LGMTGKRISTPSDALFAGLGTDYVPSGN  257 (414)
Q Consensus       230 l~ltG~~i~~a~eA~~~GLv~~vv~~~~  257 (414)
                      -.|.-+.+. ++.....|++|.+++++.
T Consensus       193 ~~l~~~~lG-G~~~~~sG~~D~~v~dd~  219 (274)
T TIGR03133       193 RALVWRTTG-GKHRFLSGDADVLVEDDV  219 (274)
T ss_pred             hcccccccc-hHhHhhcccceEEeCCHH
Confidence            344555676 677888999999998743

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.81  E-value=0.00029  Score=64.88  Aligned_cols=139  Identities=13%  Similarity=0.023  Sum_probs=91.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCc
Q 015014           90 AMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (414)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~v~~vVl--~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP  167 (414)
                      .++.++.+++...|..++.++..+-|.|  -+.|       +|+..-                    ...+..|...+-|
T Consensus        33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG-------G~v~~g--------------------~aIyd~m~~~~~~   85 (196)
T PRK12551         33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG-------GSVYDG--------------------LGIFDTMQHVKPD   85 (196)
T ss_pred             eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC-------cchhhH--------------------HHHHHHHHhcCCC
Confidence            4889999999999999886443343333  3433       333221                    1344467778889


Q ss_pred             EEEEECCccccchhhhhccCCe--EEEcCCeeEecccccCCCCCChhHHH---------------HHhhCCCcH-HHHHH
Q 015014          168 YISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAKGPGGG-SVGAY  229 (414)
Q Consensus       168 vIAavnG~a~GgG~~Lala~D~--ria~~~a~f~~pe~~~Gl~P~~g~~~---------------~L~r~~G~~-~~a~~  229 (414)
                      |+..+.|.|.+.|.-|++++|-  |++.++++|.+....-|..-...-..               .+.+.-|.. ..-.+
T Consensus        86 V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~  165 (196)
T PRK12551         86 VHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQE  165 (196)
T ss_pred             EEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            9999999999999999999985  89999999988776433211111000               122222321 12334


Q ss_pred             HHhcCCCCCcHHHHHHcCccceecCCC
Q 015014          230 LGMTGKRISTPSDALFAGLGTDYVPSG  256 (414)
Q Consensus       230 l~ltG~~i~~a~eA~~~GLv~~vv~~~  256 (414)
                      ++-....++ |+||+++||+|+|++..
T Consensus       166 ~~~rd~~ms-a~EA~eyGliD~I~~~~  191 (196)
T PRK12551        166 DTDRDFFMS-PSEAVEYGLIDLVIDKR  191 (196)
T ss_pred             HhhcCcCCC-HHHHHHcCCCcEEeccC
Confidence            444445577 99999999999999764

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.75  E-value=0.00036  Score=65.33  Aligned_cols=139  Identities=10%  Similarity=-0.027  Sum_probs=90.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEE--EEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCC
Q 015014           89 NAMNLDMDIKYKSFLDEWESDPRVKCV--LIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK  166 (414)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~v~~v--Vl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k  166 (414)
                      -.+|..+.+.+...|..++..+.-+-|  .|-+.|       +++..-                    ..++..+...+-
T Consensus        61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpG-------Gsv~aG--------------------laIyd~m~~~~~  113 (221)
T PRK14514         61 TQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPG-------GSVYAG--------------------LGIYDTMQFISS  113 (221)
T ss_pred             CEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCC-------cchhhH--------------------HHHHHHHHhcCC
Confidence            347888899999887777653222222  234444       232211                    123446777889


Q ss_pred             cEEEEECCccccchhhhhccCCe--EEEcCCeeEecccccCCCCCChhHHH---------------HHhhCCCcH-HHHH
Q 015014          167 PYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAKGPGGG-SVGA  228 (414)
Q Consensus       167 PvIAavnG~a~GgG~~Lala~D~--ria~~~a~f~~pe~~~Gl~P~~g~~~---------------~L~r~~G~~-~~a~  228 (414)
                      ||.+.+.|.|.+.|.-|++++|.  |++.++++|.+....-|......-..               .+.+.-|.. ....
T Consensus       114 ~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~  193 (221)
T PRK14514        114 DVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVW  193 (221)
T ss_pred             CEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence            99999999999999999999996  99999999988776544321111000               112222321 1233


Q ss_pred             HHHhcCCCCCcHHHHHHcCccceecCC
Q 015014          229 YLGMTGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       229 ~l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      +++-....++ |+||+++||||+|+..
T Consensus       194 ~~~~rd~wmt-A~EA~eyGliD~Vi~~  219 (221)
T PRK14514        194 ADSDRDYWMT-AQEAKEYGMIDEVLIK  219 (221)
T ss_pred             HHhhcCccCC-HHHHHHcCCccEEeec
Confidence            4445555688 9999999999999864

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.75  E-value=0.00047  Score=63.66  Aligned_cols=139  Identities=14%  Similarity=0.079  Sum_probs=92.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceE--EEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCC
Q 015014           89 NAMNLDMDIKYKSFLDEWESDPRVKC--VLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK  166 (414)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~v~~--vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k  166 (414)
                      -.++.++.+.+...|..++..+.-+-  |-|-+.|       +|+..-                    ..++..|...+-
T Consensus        34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG-------G~v~~G--------------------laIyd~m~~~~~   86 (201)
T PRK14513         34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG-------GEVYAG--------------------LAIYDTMRYIKA   86 (201)
T ss_pred             CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC-------CchhhH--------------------HHHHHHHHhcCC
Confidence            45788999999888888876432222  2334444       333221                    234456778889


Q ss_pred             cEEEEECCccccchhhhhccCCe--EEEcCCeeEecccccCCCCCChhHHH-----------------HHhhCCCcH-HH
Q 015014          167 PYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY-----------------IAAKGPGGG-SV  226 (414)
Q Consensus       167 PvIAavnG~a~GgG~~Lala~D~--ria~~~a~f~~pe~~~Gl~P~~g~~~-----------------~L~r~~G~~-~~  226 (414)
                      ||...+.|.|.+.|..|++++|-  |++.+++++-+.....|+.  +...-                 .+.+.-|.. ..
T Consensus        87 ~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~  164 (201)
T PRK14513         87 PVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEK  164 (201)
T ss_pred             CEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence            99999999999999999999995  9999999998877765531  11111                 112222321 02


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCC
Q 015014          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGN  257 (414)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~  257 (414)
                      -.+++-...-++ |+||+++||||+|+++.+
T Consensus       165 I~~~~~rd~~ms-a~EA~eyGliD~I~~~~~  194 (201)
T PRK14513        165 LLRDMERDYFMS-PEEAKAYGLIDSVIEPTR  194 (201)
T ss_pred             HHHHhccCcccC-HHHHHHcCCCcEEeccCC
Confidence            233344444577 999999999999997644

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=97.50  E-value=0.0022  Score=62.65  Aligned_cols=153  Identities=15%  Similarity=0.106  Sum_probs=89.1

Q ss_pred             cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHH
Q 015014           76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDP----RVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVF  151 (414)
Q Consensus        76 ~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~----~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  151 (414)
                      .|.++-.+..=..-++...-.+.+..+++.+.++.    -+-+|.|.-+| ++     .+.+-..         ... ..
T Consensus        69 ~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG-Ga-----RlqEg~~---------~L~-~~  132 (301)
T PRK07189         69 PVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG-GV-----RLQEANA---------GLA-AI  132 (301)
T ss_pred             EEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-Cc-----CccchHH---------HHH-HH
Confidence            35555555555567888888999999998887654    14555555444 22     2222110         000 01


Q ss_pred             HHHHHHHHHHhhCCCcEEEEECCc--cccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc-HHHHH
Q 015014          152 TAEYSLICKISEYKKPYISLMDGV--TMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG-GSVGA  228 (414)
Q Consensus       152 ~~~~~l~~~l~~~~kPvIAavnG~--a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~-~~~a~  228 (414)
                      ...+..+..+... +|+|++|-|.  |+||+...+..||++|+++++.+++.-           ...+-...|. .--..
T Consensus       133 a~i~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaG-----------P~VIe~~~G~e~~d~~  200 (301)
T PRK07189        133 AEIMRAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSG-----------PEVIEQEAGVEEFDSR  200 (301)
T ss_pred             HHHHHHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccC-----------HHHHHHhcCCcccCHH
Confidence            1112223344445 9999999999  999999999999999999988777521           1111111221 00122


Q ss_pred             HHHhcCCCCCcHHHHHHcCccceecCCCC
Q 015014          229 YLGMTGKRISTPSDALFAGLGTDYVPSGN  257 (414)
Q Consensus       229 ~l~ltG~~i~~a~eA~~~GLv~~vv~~~~  257 (414)
                      +-.+..+.+. +......|++|.+++++.
T Consensus       201 d~~~vw~~lG-G~h~~~sG~~D~~v~dd~  228 (301)
T PRK07189        201 DRALVWRTTG-GKHRYLSGLADALVDDDV  228 (301)
T ss_pred             HhcccccccC-cceeeecccceEEeCCHH
Confidence            2222222233 334455899999998653

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.43  E-value=0.0062  Score=59.51  Aligned_cols=156  Identities=16%  Similarity=0.120  Sum_probs=96.1

Q ss_pred             cCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHH
Q 015014           74 PNGVAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFT  152 (414)
Q Consensus        74 ~~~V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  152 (414)
                      +|.-..|.-|.|. ..-+++...-+.+.++++.+.+. .+-+|.|.-+| ++     ...+   ..     .. +. ...
T Consensus       119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg-Ga-----rmqE---gi-----~s-L~-~~a  181 (292)
T PRK05654        119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG-GA-----RMQE---GL-----LS-LM-QMA  181 (292)
T ss_pred             CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-Cc-----chhh---hh-----hH-HH-hHH
Confidence            4433334445554 56789999999999999988775 46677776554 22     2221   00     00 00 111


Q ss_pred             HHHHHHHHHhhCCCcEEEEECCccccchhh-hhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHH
Q 015014          153 AEYSLICKISEYKKPYISLMDGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG  231 (414)
Q Consensus       153 ~~~~l~~~l~~~~kPvIAavnG~a~GgG~~-Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~  231 (414)
                      .....+.++.....|.|+++-|+|.||+.. .++.+|++||.+++.+++--.           ..+...+|     .++ 
T Consensus       182 k~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGp-----------rvie~~~~-----e~l-  244 (292)
T PRK05654        182 KTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGP-----------RVIEQTVR-----EKL-  244 (292)
T ss_pred             HHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCH-----------HHHHhhhh-----hhh-
Confidence            222334456667899999999999999655 467799999998887776222           11111122     111 


Q ss_pred             hcCCCCCcHHHHHHcCccceecCCCCHHHHHHHH
Q 015014          232 MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL  265 (414)
Q Consensus       232 ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l  265 (414)
                       . +.+.+++-+.+.|+||.|+++.++......+
T Consensus       245 -p-e~~~~ae~~~~~G~vD~Vv~~~e~r~~l~~~  276 (292)
T PRK05654        245 -P-EGFQRAEFLLEHGAIDMIVHRRELRDTLASL  276 (292)
T ss_pred             -h-hhhcCHHHHHhCCCCcEEECHHHHHHHHHHH
Confidence             1 2243377788999999999998876544433

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.38  E-value=0.008  Score=58.52  Aligned_cols=153  Identities=17%  Similarity=0.161  Sum_probs=95.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |+++..|-.-..-+++....+.+.++++.+.+. .+-+|.|..+| ++     -+.+-         ...+. .......
T Consensus       122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSg-Ga-----RmqEg---------~~sL~-~~ak~~~  184 (285)
T TIGR00515       122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASG-GA-----RMQEA---------LLSLM-QMAKTSA  184 (285)
T ss_pred             EEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-Cc-----ccccc---------hhHHH-hHHHHHH
Confidence            454444444456789999999999999988765 46777776654 33     11110         00011 1111222


Q ss_pred             HHHHHhhCCCcEEEEECCccccchhh-hhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCC
Q 015014          157 LICKISEYKKPYISLMDGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (414)
Q Consensus       157 l~~~l~~~~kPvIAavnG~a~GgG~~-Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~  235 (414)
                      .+.++.....|.|+++-|+|.||+.. +++.+|++||.+++.+++--..           .+...+|..       +. +
T Consensus       185 ~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e~-------lp-e  245 (285)
T TIGR00515       185 ALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVREK-------LP-E  245 (285)
T ss_pred             HHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcCc-------cc-h
Confidence            34456667899999999999998655 5579999999999888762221           122222211       11 3


Q ss_pred             CCCcHHHHHHcCccceecCCCCHHHHHHHH
Q 015014          236 RISTPSDALFAGLGTDYVPSGNLGSLKEAL  265 (414)
Q Consensus       236 ~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l  265 (414)
                      .+.+++-+.+.|+||.||++.++......+
T Consensus       246 ~~q~ae~~~~~G~vD~iv~~~~~r~~l~~~  275 (285)
T TIGR00515       246 GFQTSEFLLEHGAIDMIVHRPEMKKTLASL  275 (285)
T ss_pred             hcCCHHHHHhCCCCcEEECcHHHHHHHHHH
Confidence            343366678899999999998876544433

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=97.30  E-value=0.014  Score=55.48  Aligned_cols=156  Identities=12%  Similarity=0.034  Sum_probs=92.5

Q ss_pred             cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHH
Q 015014           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEW-ESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFT  152 (414)
Q Consensus        74 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~-~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  152 (414)
                      ++.-..|.=|+|..  .++.+-...+...+... +.+...-+|.|.=.  ..|-.|..-.+..              ...
T Consensus        30 ~G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDt--pG~~~g~~aE~~G--------------~~~   91 (238)
T TIGR03134        30 AGGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDT--PSQAYGRREELLG--------------INQ   91 (238)
T ss_pred             CCEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeC--CCCCCCHHHHHHH--------------HHH
Confidence            34333344455543  68877777777777774 45566666666544  2355554332221              112


Q ss_pred             HHHHHHHHH---hhCCCcEEEEECCccccchhhhh-ccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHH
Q 015014          153 AEYSLICKI---SEYKKPYISLMDGVTMGFGIGIS-GHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGA  228 (414)
Q Consensus       153 ~~~~l~~~l---~~~~kPvIAavnG~a~GgG~~La-la~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~  228 (414)
                      ...++...+   ...+.|+|+.|-|.++|||+.-. +.+|.++|-+++       .++..+.-+++..+-+-..   ...
T Consensus        92 a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A-------~i~vm~~e~aa~I~~~~~~---~~~  161 (238)
T TIGR03134        92 ALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGA-------MVHVMDLESMARVTKRSVE---ELE  161 (238)
T ss_pred             HHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCc-------EEEecCHHHHHHHHccCHh---HHH
Confidence            223333444   45669999999999998766444 347776666555       5556665666555544432   444


Q ss_pred             HHHhcCC--CCCcHHHHHHcCccceecCCCCH
Q 015014          229 YLGMTGK--RISTPSDALFAGLGTDYVPSGNL  258 (414)
Q Consensus       229 ~l~ltG~--~i~~a~eA~~~GLv~~vv~~~~l  258 (414)
                      ++.-+-.  ..+ ...+.+.|+||.|+++.+-
T Consensus       162 e~a~~~~~~a~~-~~~~~~~G~vd~vi~~~~~  192 (238)
T TIGR03134       162 ALAKSSPVFAPG-IENFVKLGGVHALLDVADA  192 (238)
T ss_pred             HHHHhhhhhccC-HHHHHhCCCccEEeCCCCc
Confidence            4433222  344 6789999999999997664

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.30  E-value=0.0068  Score=59.02  Aligned_cols=153  Identities=16%  Similarity=0.120  Sum_probs=92.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |.++.++--=..-++....-+.+.++++.+.+.. +-+|++..+| +     +-+.+-.        ..... + .....
T Consensus       135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SG-G-----ARmQEg~--------~sL~q-m-ak~sa  197 (296)
T CHL00174        135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASG-G-----ARMQEGS--------LSLMQ-M-AKISS  197 (296)
T ss_pred             EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCC-C-----ccccccc--------hhhhh-h-HHHHH
Confidence            5555555444567899999999999999887754 5667776555 2     2222210        00000 1 01101


Q ss_pred             HHHH-HhhCCCcEEEEECCccccchhhh-hccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcC
Q 015014          157 LICK-ISEYKKPYISLMDGVTMGFGIGI-SGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTG  234 (414)
Q Consensus       157 l~~~-l~~~~kPvIAavnG~a~GgG~~L-ala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG  234 (414)
                      .+.. ...-..|.|+++.|+|.||+... ++.||++|+.+++.+++--.           ..+...+|..       +. 
T Consensus       198 a~~~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGP-----------rVIe~t~ge~-------lp-  258 (296)
T CHL00174        198 ALYDYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGK-----------RVIEQTLNKT-------VP-  258 (296)
T ss_pred             HHHHHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCH-----------HHHHHhcCCc-------CC-
Confidence            1122 22467999999999999988877 56699999988877664211           1111122211       22 


Q ss_pred             CCCCcHHHHHHcCccceecCCCCHHHHHHHH
Q 015014          235 KRISTPSDALFAGLGTDYVPSGNLGSLKEAL  265 (414)
Q Consensus       235 ~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l  265 (414)
                      +.+.+|+-.++.|+||.+|+..++......|
T Consensus       259 e~fq~ae~l~~~G~vD~iV~r~~lr~~l~~l  289 (296)
T CHL00174        259 EGSQAAEYLFDKGLFDLIVPRNLLKGVLSEL  289 (296)
T ss_pred             cccccHHHHHhCcCceEEEcHHHHHHHHHHH
Confidence            2344477788999999999988876544443

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=97.18  E-value=0.0079  Score=56.35  Aligned_cols=143  Identities=17%  Similarity=0.109  Sum_probs=89.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceE--EEEEeCCCCCccCC---CChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhC
Q 015014           90 AMNLDMDIKYKSFLDEWESDPRVKC--VLIEGSGPRAFCAG---MDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEY  164 (414)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~v~~--vVl~g~g~~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  164 (414)
                      .++.++.+.+...|-.++.++..+-  +-|-+.| +..-+|   +++.+                    ....+..+...
T Consensus        48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpG-Gsv~~G~~iG~v~~--------------------glaIyD~m~~i  106 (222)
T PRK12552         48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTG-TSWYTGDAIGFETE--------------------AFAICDTMRYI  106 (222)
T ss_pred             chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCC-CCcccccccccccc--------------------HHHHHHHHHhc
Confidence            3455588888888888865432222  3345655 344444   11111                    12344467778


Q ss_pred             CCcEEEEECCccccchhhhhccCCe--EEEcCCeeEecccccCCCCCChhHHH-----------------HHhhCCCcH-
Q 015014          165 KKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY-----------------IAAKGPGGG-  224 (414)
Q Consensus       165 ~kPvIAavnG~a~GgG~~Lala~D~--ria~~~a~f~~pe~~~Gl~P~~g~~~-----------------~L~r~~G~~-  224 (414)
                      +-||...+.|.|.+.|..|++++|-  |++.++++|-+.....|.. + ..+-                 .+.+.-|.. 
T Consensus       107 k~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~-G-~A~di~~~a~el~~~r~~l~~iya~~TG~~~  184 (222)
T PRK12552        107 KPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR-G-QATDIQIRAKEVLHNKRTMLEILSRNTGQTV  184 (222)
T ss_pred             CCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc-c-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence            8899999999999999999999995  9999999998877654432 1 1111                 111111221 


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCC
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSG  256 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~  256 (414)
                      ..-.+++-.-.-++ |+||+++||||+|+.+.
T Consensus       185 e~I~~d~~rd~wms-A~EA~eyGliD~Ii~~~  215 (222)
T PRK12552        185 EKLSKDTDRMFYLT-PQEAKEYGLIDRVLESR  215 (222)
T ss_pred             HHHHHHhcCCCcCC-HHHHHHcCCCcEEeccC
Confidence            01122222233477 99999999999999653

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=97.17  E-value=0.00024  Score=62.94  Aligned_cols=99  Identities=12%  Similarity=0.069  Sum_probs=59.7

Q ss_pred             HhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEeccccc------------CCC---------CCChh-----HH
Q 015014          161 ISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG------------IGL---------FPDVG-----FS  214 (414)
Q Consensus       161 l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~------------~Gl---------~P~~g-----~~  214 (414)
                      +.+..|||||.++|.+..+|.-|+.+||-+++.+.+.++..-+.            +|+         .-..+     .+
T Consensus         2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s   81 (154)
T PF01343_consen    2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS   81 (154)
T ss_dssp             HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred             ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence            34678999999999999999999999999999988866653331            222         11111     10


Q ss_pred             H----HHhh-----------CC----CcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHH
Q 015014          215 Y----IAAK-----------GP----GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGS  260 (414)
Q Consensus       215 ~----~L~r-----------~~----G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~  260 (414)
                      -    .+.+           .+    |......+-+..|..++ +++|++.||||++-..+++..
T Consensus        82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~-~~~A~~~GLiD~i~~~~~~~~  145 (154)
T PF01343_consen   82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFT-AQQALELGLIDEIGTFDEAIA  145 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEE-HHHHHHTTSSSEETSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhcccc-HHHHHHcCchhhcCCHHHHHH
Confidence            0    0100           01    11101122367899998 999999999999976555543

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.0088  Score=60.78  Aligned_cols=150  Identities=15%  Similarity=0.099  Sum_probs=105.6

Q ss_pred             cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHH
Q 015014           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA  153 (414)
Q Consensus        74 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (414)
                      ++.|.+|.++     +++++.+.+.+.+.++.++++.. .+|||.=.-|+.                         ....
T Consensus        25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGG-------------------------l~~s   73 (436)
T COG1030          25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELDTPGG-------------------------LLDS   73 (436)
T ss_pred             CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCc-------------------------hHHH
Confidence            4567888887     77999999999999999998763 444444322321                         1223


Q ss_pred             HHHHHHHHhhCCCcEEEEE---CCccccchhhhhccCCeEEEcCCeeEeccccc-CC-CCCC-hh-HHHH------HhhC
Q 015014          154 EYSLICKISEYKKPYISLM---DGVTMGFGIGISGHGRYRIVTEKTLLAMPENG-IG-LFPD-VG-FSYI------AAKG  220 (414)
Q Consensus       154 ~~~l~~~l~~~~kPvIAav---nG~a~GgG~~Lala~D~ria~~~a~f~~pe~~-~G-l~P~-~g-~~~~------L~r~  220 (414)
                      +.++..++.+.+.|||..|   .+.|..+|.-++++||+..|++.+.++--..- .| -.+. .. ....      +++.
T Consensus        74 m~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~  153 (436)
T COG1030          74 MRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEE  153 (436)
T ss_pred             HHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHH
Confidence            4467778999999988888   34699999999999999999999988864433 33 1111 11 1121      2333


Q ss_pred             CCcH-HHHHHHHhcCCCCCcHHHHHHcCccceecCC
Q 015014          221 PGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       221 ~G~~-~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      -|+. ..+.+++-....++ ++||++.|++|-+..+
T Consensus       154 ~gRN~~~ae~~v~~~~~l~-a~eA~~~~vid~iA~~  188 (436)
T COG1030         154 RGRNPTWAERFVTENLSLT-AEEALRQGVIDLIARD  188 (436)
T ss_pred             cCCChHHHHHHhhhccCCC-hhHHHhcCccccccCC
Confidence            3431 15677888888999 9999999999988653

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=97.10  E-value=0.0068  Score=65.04  Aligned_cols=84  Identities=12%  Similarity=0.086  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEEEEECC
Q 015014           95 MDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDG  174 (414)
Q Consensus        95 m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG  174 (414)
                      .+.++.++|+.+.+|+.|++|||.-.+    +.|+++..+.                 ..++.+..+....|||||..++
T Consensus        77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~----~~g~~~~~~~-----------------ei~~ai~~fk~sgKpVvA~~~~  135 (584)
T TIGR00705        77 SLFDIVNAIRQAADDRRIEGLVFDLSN----FSGWDSPHLV-----------------EIGSALSEFKDSGKPVYAYGTN  135 (584)
T ss_pred             CHHHHHHHHHHHhcCCCceEEEEEccC----CCCCCHHHHH-----------------HHHHHHHHHHhcCCeEEEEEcc
Confidence            567899999999999999999998653    1233433221                 2223444566678999999988


Q ss_pred             ccccchhhhhccCCeEEEcCCeeEec
Q 015014          175 VTMGFGIGISGHGRYRIVTEKTLLAM  200 (414)
Q Consensus       175 ~a~GgG~~Lala~D~ria~~~a~f~~  200 (414)
                      ++ -+|.-|+.+||-+++.+...+++
T Consensus       136 ~~-s~~YylAs~AD~I~~~p~G~v~~  160 (584)
T TIGR00705       136 YS-QGQYYLASFADEIILNPMGSVDL  160 (584)
T ss_pred             cc-chhhhhhhhCCEEEECCCceEEe
Confidence            76 67899999999999999877644

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=96.75  E-value=0.026  Score=51.85  Aligned_cols=98  Identities=14%  Similarity=0.044  Sum_probs=65.4

Q ss_pred             HHHHhhCCCcEEEEECCccccchhhhhccCCeE--EEcCCeeEecccccCCCCCChhHHH----------------HHhh
Q 015014          158 ICKISEYKKPYISLMDGVTMGFGIGISGHGRYR--IVTEKTLLAMPENGIGLFPDVGFSY----------------IAAK  219 (414)
Q Consensus       158 ~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~r--ia~~~a~f~~pe~~~Gl~P~~g~~~----------------~L~r  219 (414)
                      +..+...+.||...+-|.|...|.-|++++|..  ++.+++++-+.... |.+-+...=.                .+..
T Consensus        78 ydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~  156 (200)
T COG0740          78 YDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYAE  156 (200)
T ss_pred             HHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346777899999999999999999999999985  88888888766655 4332211100                1111


Q ss_pred             CCCcH-HHHHHHHhcCCCCCcHHHHHHcCccceecCCCC
Q 015014          220 GPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGN  257 (414)
Q Consensus       220 ~~G~~-~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~  257 (414)
                      .-|.. ..-...+-....++ |+||+++||+|+|+...+
T Consensus       157 ~TGq~~e~i~~d~drd~~ms-a~eA~~yGLiD~V~~~~~  194 (200)
T COG0740         157 HTGQTLEKIEKDTDRDTWMS-AEEAKEYGLIDKVIESRE  194 (200)
T ss_pred             HcCCCHHHHHHhhcccccCC-HHHHHHcCCcceeccccc
Confidence            22322 01112223334577 999999999999997654

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.74  E-value=0.054  Score=57.18  Aligned_cols=155  Identities=14%  Similarity=0.146  Sum_probs=96.2

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHH
Q 015014           80 ITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLI  158 (414)
Q Consensus        80 Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~  158 (414)
                      |.=|+|. ..-+++..-.+...+.++.+++. .+-+|.|.-.+  .|..|.+-..              ........+++
T Consensus       319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~--G~~~g~~~E~--------------~g~~~~~a~~~  381 (512)
T TIGR01117       319 IIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVP--GFLPGVNQEY--------------GGIIRHGAKVL  381 (512)
T ss_pred             EEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCc--CccccHHHHH--------------HHHHHHHHHHH
Confidence            3345554 34579999999999999987764 46666666553  2665544221              11333445677


Q ss_pred             HHHhhCCCcEEEEECCccccchhhhhcc-----CCeEEEcCCeeEecccccCCCCCChhHHHHHh-hCCC---cHHH--H
Q 015014          159 CKISEYKKPYISLMDGVTMGFGIGISGH-----GRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA-KGPG---GGSV--G  227 (414)
Q Consensus       159 ~~l~~~~kPvIAavnG~a~GgG~~Lala-----~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~-r~~G---~~~~--a  227 (414)
                      .++....+|.|+.|-|.+.|||. ++++     +|+++|.+++.++       +.++-++...+- +.+.   ....  .
T Consensus       382 ~a~~~~~vP~isvi~g~~~Gga~-~am~~~~~~~d~~~a~p~a~~~-------v~~pe~a~~i~~~~~l~~~~~~~~~~~  453 (512)
T TIGR01117       382 YAYSEATVPKVTIITRKAYGGAY-LAMCSKHLGADQVYAWPTAEIA-------VMGPAGAANIIFRKDIKEAKDPAATRK  453 (512)
T ss_pred             HHHHhCCCCEEEEEcCCCchHHH-HHhccccCCCCEEEEcCCCeEe-------ecCHHHHHHHHhhhhcccccCHHHHHH
Confidence            78888999999999999988754 4443     8888877776655       443333333332 2111   0001  1


Q ss_pred             HHHH-hcCCCCCcHHHHHHcCccceecCCCCHHH
Q 015014          228 AYLG-MTGKRISTPSDALFAGLGTDYVPSGNLGS  260 (414)
Q Consensus       228 ~~l~-ltG~~i~~a~eA~~~GLv~~vv~~~~l~~  260 (414)
                      ..+. +.-+..+ +..+.+.|+||.|+++.++..
T Consensus       454 ~~~~~~~~~~~~-~~~~a~~g~vD~VI~P~~tR~  486 (512)
T TIGR01117       454 QKIAEYREEFAN-PYKAAARGYVDDVIEPKQTRP  486 (512)
T ss_pred             HHHHHHHHhhcC-HHHHHhcCCCCeeEChHHHHH
Confidence            1111 1122345 888999999999999987754

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=95.84  E-value=0.2  Score=53.47  Aligned_cols=110  Identities=13%  Similarity=0.051  Sum_probs=69.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |.++--+.-=+.-+++....+.+.++++.+.+.. +-+|.|.-+| +++-.+ ....+          .... .+...+.
T Consensus       131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSg-Garl~~-q~e~~----------~~~~-~~g~if~  196 (569)
T PLN02820        131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSG-GANLPR-QAEVF----------PDRD-HFGRIFY  196 (569)
T ss_pred             EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC-CcCCcc-ccccc----------chHh-HHHHHHH
Confidence            4444444333567899999999999999887754 5566665444 343211 00000          0000 1111222


Q ss_pred             HHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCC-eeEec
Q 015014          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAM  200 (414)
Q Consensus       157 l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~-a~f~~  200 (414)
                      ....+....+|.|++|-|.|.|||.-....||++|++++ +.+.+
T Consensus       197 ~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~  241 (569)
T PLN02820        197 NQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL  241 (569)
T ss_pred             HHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe
Confidence            223455667999999999999999999999999999875 54443

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=95.73  E-value=0.097  Score=55.15  Aligned_cols=141  Identities=18%  Similarity=0.173  Sum_probs=91.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |.++..+.--...++.....+.+..+++.+.++. +-+|.|.-+| ++|  + ++.+-....         . .....+.
T Consensus        59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~dsg-Ga~--~-r~~eg~~~l---------~-~~g~i~~  123 (493)
T PF01039_consen   59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVDSG-GAF--L-RMQEGVESL---------M-GMGRIFR  123 (493)
T ss_dssp             EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEEES-SBC--G-GGGGHHHHH---------H-HHHHHHH
T ss_pred             EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEecccc-ccc--c-ccchhhhhh---------h-hhHHHHH
Confidence            4444444444567899999999999999888765 4455554333 221  1 444433211         0 1122233


Q ss_pred             HHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCC-eeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCC
Q 015014          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (414)
Q Consensus       157 l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~-a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~  235 (414)
                      ....+.. ..|+|+++.|.|.|||.-++..||++|+.++ +.+++.                    |+.  ..+ ..+|+
T Consensus       124 ~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~--------------------GP~--vv~-~~~Ge  179 (493)
T PF01039_consen  124 AIARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA--------------------GPR--VVE-SATGE  179 (493)
T ss_dssp             HHHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------THH--HHH-HHHSS
T ss_pred             HHHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec--------------------ccc--ccc-cccCc
Confidence            3445566 9999999999999999999999999999997 776532                    211  122 24567


Q ss_pred             CCCcHHHH-------HHcCccceecCCCC
Q 015014          236 RISTPSDA-------LFAGLGTDYVPSGN  257 (414)
Q Consensus       236 ~i~~a~eA-------~~~GLv~~vv~~~~  257 (414)
                      .++ .++.       ...|.+|.++++++
T Consensus       180 ~~~-~~~lgG~~~h~~~sG~~d~v~~de~  207 (493)
T PF01039_consen  180 EVD-SEELGGADVHAAKSGVVDYVVDDEE  207 (493)
T ss_dssp             CTS-HHHHHBHHHHHHTSSSSSEEESSHH
T ss_pred             ccc-chhhhhhhhhcccCCCceEEEechH
Confidence            777 5543       47899999998753

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=95.67  E-value=0.13  Score=54.47  Aligned_cols=106  Identities=16%  Similarity=0.068  Sum_probs=64.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |.++..+..=..-++.....+.+..+++.+.+.. +-+|.|.-+| ++     .+.+-..         .+..+ ...+.
T Consensus        84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-Ga-----rm~eg~~---------~l~~~-~~~~~  146 (512)
T TIGR01117        84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-GA-----RIQEAVD---------ALKGY-GDIFY  146 (512)
T ss_pred             EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-CC-----Cccccch---------hhhhH-HHHHH
Confidence            4444444333567888888999999999887765 4455554433 23     2221000         00001 11111


Q ss_pred             HHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCe-eEec
Q 015014          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT-LLAM  200 (414)
Q Consensus       157 l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a-~f~~  200 (414)
                      .. ....-..|+|+++-|.|.||+......|||+|+.+++ .+++
T Consensus       147 ~~-~~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~  190 (512)
T TIGR01117       147 RN-TIASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI  190 (512)
T ss_pred             HH-HHHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEe
Confidence            11 1223458999999999999998888899999999964 3443

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=95.55  E-value=0.02  Score=55.09  Aligned_cols=88  Identities=18%  Similarity=0.158  Sum_probs=65.6

Q ss_pred             HHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCC
Q 015014          156 SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (414)
Q Consensus       156 ~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~  235 (414)
                      .-...+.++++|+||.|=|---+||.--...+|.+.+-++++|+.      +.|.+.++. |-+=.   +++.+. -...
T Consensus       179 ~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsI-LWkD~---~ka~eA-Ae~m  247 (317)
T COG0825         179 RNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASI-LWKDA---SKAKEA-AEAM  247 (317)
T ss_pred             HHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhh-hhcCh---hhhHHH-HHHc
Confidence            344568889999999999988777765556799999999999984      445555544 43332   245544 3456


Q ss_pred             CCCcHHHHHHcCccceecCC
Q 015014          236 RISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       236 ~i~~a~eA~~~GLv~~vv~~  255 (414)
                      .|+ |++.+++||||.|+|.
T Consensus       248 kit-a~dLk~lgiID~II~E  266 (317)
T COG0825         248 KIT-AHDLKELGIIDGIIPE  266 (317)
T ss_pred             CCC-HHHHHhCCCcceeccC
Confidence            899 9999999999999974

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=95.42  E-value=0.71  Score=44.28  Aligned_cols=151  Identities=19%  Similarity=0.137  Sum_probs=95.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |+...++--=-.-+|..-.=+.+..+++.+-.+. +.+|+++.+|+      +-..|   ..     .+..  .......
T Consensus       124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f~aSGG------ARMQE---g~-----lSLM--QMaktsa  186 (294)
T COG0777         124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDK-LPLVLFSASGG------ARMQE---GI-----LSLM--QMAKTSA  186 (294)
T ss_pred             EEEEEEeccccccchhHHHHHHHHHHHHHHHHhC-CCEEEEecCcc------hhHhH---HH-----HHHH--HHHHHHH
Confidence            5555555444446788888888999998887654 78999988872      22221   10     0000  1111223


Q ss_pred             HHHHHhhCCCcEEEEECCccccc-hhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCC
Q 015014          157 LICKISEYKKPYISLMDGVTMGF-GIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (414)
Q Consensus       157 l~~~l~~~~kPvIAavnG~a~Gg-G~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~  235 (414)
                      .+..+.....|+|+.+..++.|| -..+++..|+.||-++|.++|.-.               |++- + ...+-+--| 
T Consensus       187 Al~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGp---------------RVIE-Q-Tire~LPeg-  248 (294)
T COG0777         187 ALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGP---------------RVIE-Q-TIREKLPEG-  248 (294)
T ss_pred             HHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcc---------------hhhh-h-hhcccCCcc-
Confidence            45567788999999999999876 356778899998887776665322               2221 1 112222222 


Q ss_pred             CCCcHHHHHHcCccceecCCCCHHHHHH
Q 015014          236 RISTPSDALFAGLGTDYVPSGNLGSLKE  263 (414)
Q Consensus       236 ~i~~a~eA~~~GLv~~vv~~~~l~~~~~  263 (414)
                       +..++-.++.|+||.||+..++.....
T Consensus       249 -fQ~aEfLlehG~iD~iv~R~elr~tla  275 (294)
T COG0777         249 -FQTAEFLLEHGMIDMIVHRDELRTTLA  275 (294)
T ss_pred             -hhhHHHHHHcCCceeeecHHHHHHHHH
Confidence             323788889999999999877754333

>PRK10949 protease 4; Provisional

Probab=94.88  E-value=0.16  Score=54.90  Aligned_cols=84  Identities=7%  Similarity=0.064  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEEEEECC
Q 015014           95 MDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDG  174 (414)
Q Consensus        95 m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG  174 (414)
                      .+.++.++|+.+..||.|++|||.-.+++    |..+..+                 ....+.+..+....|||||..+.
T Consensus        96 ~l~div~~i~~Aa~D~rIkgivL~i~s~g----G~~~a~~-----------------~eI~~ai~~fk~sGKpVvA~~~~  154 (618)
T PRK10949         96 SLFDIVNTIRQAKDDRNITGIVLDLKNFA----GADQPSM-----------------QYIGKALREFRDSGKPVYAVGDS  154 (618)
T ss_pred             cHHHHHHHHHHHhcCCCceEEEEEeCCCC----CccHHHH-----------------HHHHHHHHHHHHhCCeEEEEecC
Confidence            45688999999999999999999876421    2222111                 11223344566778999996555


Q ss_pred             ccccchhhhhccCCeEEEcCCeeEec
Q 015014          175 VTMGFGIGISGHGRYRIVTEKTLLAM  200 (414)
Q Consensus       175 ~a~GgG~~Lala~D~ria~~~a~f~~  200 (414)
                      ++ -+|.-||.+||-+++.+...+++
T Consensus       155 ~~-s~~YyLASaAD~I~l~P~G~v~~  179 (618)
T PRK10949        155 YS-QGQYYLASFANKIYLSPQGVVDL  179 (618)
T ss_pred             cc-chhhhhhhhCCEEEECCCceEEE
Confidence            54 57899999999999999876654

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=91.49  E-value=6.7  Score=42.12  Aligned_cols=146  Identities=12%  Similarity=0.137  Sum_probs=91.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcE
Q 015014           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (414)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPv  168 (414)
                      -+++.+-.+...+.++..+. -++-+|-|.-.  ..|-.|.+-..              .-..+...+++.++....+|.
T Consensus       380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~--pGf~~G~~~E~--------------~G~~~~~a~l~~A~a~~~VP~  442 (569)
T PLN02820        380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNI--TGFMVGSRSEA--------------SGIAKAGAKMVMAVACAKVPK  442 (569)
T ss_pred             CccCHHHHHHHHHHHHHHHh-cCCCEEEEEEC--CCCCCCHHHHH--------------hhHHHHHHHHHHHHHhCCCCE
Confidence            45788888888888887765 45777777654  24777655432              113445567888899999999


Q ss_pred             EEEECCccccchhhhhc----cCCeEEEcCCeeEecccccCCCCCChhHHHHHhhC-C------C----cHHHH---HHH
Q 015014          169 ISLMDGVTMGFGIGISG----HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-P------G----GGSVG---AYL  230 (414)
Q Consensus       169 IAavnG~a~GgG~~Lal----a~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~-~------G----~~~~a---~~l  230 (414)
                      |++|=|.+.|+|..-..    ..|++++.       |...+|..++-|+...+-+. +      |    .....   .++
T Consensus       443 isvi~g~a~G~g~~aM~g~~~~~d~~~aw-------p~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~  515 (569)
T PLN02820        443 ITIIVGGSFGAGNYGMCGRAYSPNFLFMW-------PNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKT  515 (569)
T ss_pred             EEEEECCcchHHHHHhcCcCCCCCEEEEC-------CCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHH
Confidence            99999999997665443    44555555       55555666656655555331 1      0    00000   001


Q ss_pred             -HhcCCCCCcHHHHHHcCccceecCCCCHH
Q 015014          231 -GMTGKRISTPSDALFAGLGTDYVPSGNLG  259 (414)
Q Consensus       231 -~ltG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (414)
                       -..-+..+ +-.|-..|++|.|+++.+..
T Consensus       516 ~~~~~~~~~-p~~aa~~~~vD~VIdP~dTR  544 (569)
T PLN02820        516 VEAYEREAN-PYYSTARLWDDGVIDPADTR  544 (569)
T ss_pred             HHHHHHhCC-HHHHHHcCCcCcccCHHHHH
Confidence             11122345 66788899999999887653

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=91.15  E-value=0.41  Score=49.06  Aligned_cols=65  Identities=9%  Similarity=-0.008  Sum_probs=49.1

Q ss_pred             HHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHhCCCchHHHHHHhhHhC-CCCCCCC
Q 015014          336 EALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVD-KDQVLSQ  410 (414)
Q Consensus       336 ~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~afl~d-k~~~P~~  410 (414)
                      +.+++|+..+|.+++.+|+.++...          ..+...+..|......++.++|+.|++.+|..+ .++.|.|
T Consensus       228 ~~~~~i~~~~p~av~~~k~~~~~~~----------~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~~~~~kr~~~w  293 (401)
T PLN02157        228 EQLKKLLTDDPSVVESCLEKCAEVA----------HPEKTGVIRRIDLLEKCFSHDTVEEIIDSLEIEAGRRKDTW  293 (401)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHhccc----------CCcchhHHHHHHHHHHHhcCCCHHHHHHHHHhhhcccchHH
Confidence            4555788899999999999987532          234566777888888899999999999999421 3345665

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=91.03  E-value=0.98  Score=47.48  Aligned_cols=101  Identities=16%  Similarity=0.050  Sum_probs=65.0

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHH
Q 015014           78 AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSL  157 (414)
Q Consensus        78 ~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l  157 (414)
                      .++-=+.+-+.-++..--.+.+..+.+.+.++....+.+..|.|       +.+.+-.         .... .+...+..
T Consensus        94 ~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgG-------ari~~~v---------~~l~-g~g~iF~~  156 (526)
T COG4799          94 FVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGG-------ARIQEGV---------PSLA-GYGRIFYR  156 (526)
T ss_pred             EEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEcccc-------cccccCc---------cccc-cchHHHHH
Confidence            33333445566778877778888888877776554454555543       2332211         0111 11222223


Q ss_pred             HHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCe
Q 015014          158 ICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT  196 (414)
Q Consensus       158 ~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a  196 (414)
                      ...+... .|.|++|-|.|.|||.-+...||++|+.++.
T Consensus       157 ~a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~  194 (526)
T COG4799         157 NARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ  194 (526)
T ss_pred             HHHhccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence            3345555 9999999999999999999999999999985

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=81.71  E-value=5.8  Score=41.87  Aligned_cols=156  Identities=16%  Similarity=0.171  Sum_probs=89.5

Q ss_pred             EEEcCCCCCC-CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHH
Q 015014           80 ITLDRPKALN-AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLI  158 (414)
Q Consensus        80 Itlnrp~~~N-al~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~  158 (414)
                      |.=|+|.... +++.+-.....+.++.++. -++-+|.|.-.  ..|-.|-+-..              ........+++
T Consensus       298 iian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt--pGf~~g~~~E~--------------~g~~~~ga~~~  360 (493)
T PF01039_consen  298 IIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT--PGFMPGPEAER--------------AGIIRAGARLL  360 (493)
T ss_dssp             EEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE--CEB--SHHHHH--------------TTHHHHHHHHH
T ss_pred             EEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec--ccccccchhhh--------------cchHHHHHHHH
Confidence            4445665322 7999999999999988876 45777777654  34665533221              11344556788


Q ss_pred             HHHhhCCCcEEEEECCccccchhhhhccC----CeEEEcCCeeEecccccCCCCCChhHHHHHhhC-C------C--cHH
Q 015014          159 CKISEYKKPYISLMDGVTMGFGIGISGHG----RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-P------G--GGS  225 (414)
Q Consensus       159 ~~l~~~~kPvIAavnG~a~GgG~~Lala~----D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~-~------G--~~~  225 (414)
                      .++..+..|.|..|-|.+.|||..-....    |+++|.+++.       +|..++-|+...+-+. .      |  ...
T Consensus       361 ~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~-------~~vm~~e~a~~i~~~~~~~~~~~~~~~~~~  433 (493)
T PF01039_consen  361 YALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAE-------IGVMGPEGAASILYRDELEAAEAEGADPEA  433 (493)
T ss_dssp             HHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-E-------EESS-HHHHHHHHTHHHHHHSCHCCHSHHH
T ss_pred             HHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcce-------eeecChhhhheeeehhhhhhhhcccchhHH
Confidence            89999999999999999999776444333    5665555555       4555545554433211 0      0  000


Q ss_pred             -HHHHHHhcCCC-CCcHHHHHHcCccceecCCCCHHH
Q 015014          226 -VGAYLGMTGKR-ISTPSDALFAGLGTDYVPSGNLGS  260 (414)
Q Consensus       226 -~a~~l~ltG~~-i~~a~eA~~~GLv~~vv~~~~l~~  260 (414)
                       ....+--.-+. .+ +..+...|++|.++++.+...
T Consensus       434 ~~~~~~~~~~~~~~~-~~~~a~~~~~D~ii~p~~tR~  469 (493)
T PF01039_consen  434 QRAEKIAEYEDELSS-PYRAASRGYVDDIIDPAETRK  469 (493)
T ss_dssp             HHHHHHHHHHHHHSS-HHHHHHTTSSSEESSGGGHHH
T ss_pred             HHHHHHHHHHHhcCC-HHHHHhcCCCCCccCHHHHHH
Confidence             01111111112 45 888999999999999987653

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	414
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		2e-50
4j2u_A	365	Crystal Structure Of An Enoyl-coa Hydratase From Rh		3e-40
4hdt_A	353	Crystal Structure Of A Carnitinyl-Coa Dehydratase F		3e-38
3ju1_A	407	Crystal Structure Of Enoyl-Coa HydrataseISOMERASE F		2e-31
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		3e-13
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		1e-12
2ej5_A	257	Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr		1e-11
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		1e-11
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		1e-11
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		1e-11
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		1e-11
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		2e-11
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		2e-11
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		2e-11
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		3e-11
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		8e-11
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		2e-10
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		2e-10
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		2e-10
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		2e-10
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		3e-09
3qre_A	298	Crystal Structure Of An Enoyl-Coa Hydratase Echa12_		9e-09
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		1e-08
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		2e-08
3fdu_A	266	Crystal Structure Of A Putative Enoyl-Coa Hydratase		3e-08
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		4e-08
3rrv_A	276	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		4e-08
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		4e-08
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		7e-08
3tlf_A	274	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		1e-07
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		1e-07
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		1e-07
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		2e-07
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		2e-07
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		2e-07
3myb_A	286	Crystal Structure Of Enoyl-Coa Hydratase Mycobacter		2e-07
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		6e-07
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		1e-06
2a7k_A	250	Carboxymethylproline Synthase (carb) From Pectobact		2e-06
3swx_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		3e-06
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		4e-06
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		4e-06
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		8e-06
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		1e-05
2ppy_A	265	Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F		1e-05
2j5i_A	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		2e-05
2vsu_C	275	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		2e-05
2vsu_A	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		2e-05
2vsu_E	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		2e-05
2vsu_F	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		2e-05
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		2e-05
2j5i_I	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		2e-05
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		2e-05
2j5i_B	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		2e-05
2vss_F	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		2e-05
2vss_E	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		2e-05
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		4e-05
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		5e-05
2fw2_A	260	Catalytic Domain Of Cdy Length = 260		8e-05
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		1e-04
1xx4_A	261	Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Co		1e-04
3l3s_A	263	Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS		1e-04
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		3e-04
3g64_A	279	Crystal Structure Of Putative Enoyl-Coa Hydratase F		3e-04
2fbm_A	291	Acetyltransferase Domain Of Cdy1 Length = 291		4e-04
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		4e-04
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		8e-04
3njb_A	333	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		8e-04

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/347 (37%), Positives = 193/347 (55%), Gaps = 30/347 (8%)
Query: 64  AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPR 123
           AEE + G     GV  ITL+RPK LNA+ L+   +    L +WE DP    ++I+G+G +
Sbjct: 5   AEEVLLGKKGCTGV--ITLNRPKFLNALTLNXIRQIYPQLKKWEQDPETFLIIIKGAGGK 62
Query: 124 AFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGI 183
           AFCAG DI+ V++E +K +   + P  F  EY L   +   +KPY++L+ G+T G G+G+
Sbjct: 63  AFCAGGDIR-VISEAEKAKQK-IAPVFFREEYXLNNAVGSCQKPYVALIHGITXGGGVGL 120
Query: 184 SGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDA 243
           S HG++R+ TEK L A PE  IGLFPDVG  Y   +    G +G +L +TG R+    D 
Sbjct: 121 SVHGQFRVATEKCLFAXPETAIGLFPDVGGGYFLPRLQ--GKLGYFLALTGFRLKG-RDV 177
Query: 244 LFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ-- 301
             AG+ T +V S  L  L+E LLA+       ++I ++L  Y ++ + +     +L +  
Sbjct: 178 YRAGIATHFVDSEKLAXLEEDLLAL--KSPSKENIASVLENYHTESKIDRDKSFILEEHX 235
Query: 302 --ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV 359
             I SCFS+  +V +IIE L++  SS       +A E L+ + K +P SL +T +   + 
Sbjct: 236 DKINSCFSA-NTVEEIIENLQQDGSS-------FALEQLKVINKXSPTSLKITLRQLXEG 287
Query: 360 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
           +S           L  V+  EYR++       DF EGVRAVL+DKDQ
Sbjct: 288 SS---------KTLQEVLTXEYRLSQACXRGHDFHEGVRAVLIDKDQ 325

>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365

Iteration: 1
 Score =  162 bits (410), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 165/332 (49%), Gaps = 44/332 (13%)
Query: 80  ITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDI-----KGV 134
           ITL RP ALNA+      +  + L  W  DP V+ V+I+  GPRAFCAG DI     +GV
Sbjct: 37  ITLSRPAALNALTCAXVQEIDAALRGWIGDPEVELVVIDAEGPRAFCAGGDIAELHGRGV 96
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             +    ++       +  EY    +I+ + KP +SL  G T G G+G+  H R+RIV E
Sbjct: 97  AGDHAFGQD------FWRVEYRXNDRIAAFPKPIVSLXQGFTXGGGVGLGCHARHRIVGE 150
Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 254
            + ++ PE  IGL PDVG +++ A+ P  G +G +LG+TG R   P DA+FAG    +VP
Sbjct: 151 TSQISXPECAIGLVPDVGGTHLLARAP--GRIGVWLGLTGARXG-PGDAIFAGFADRFVP 207
Query: 255 SGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQ 314
             +   L  AL     +   H           + PEG  P  +L  +I   F+       
Sbjct: 208 EADWPDLIAALEGGDLALPDH-----------AAPEGRLP--VLQDEIDRLFAG------ 248
Query: 315 IIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLS 374
            + E+     + +T +A    EAL+ + + +P +L  T +   ++  + G        + 
Sbjct: 249 TLAEIPARLEATDTPLAA---EALKALRRSSPLALAATLEILQRLGPSAG--------IR 297
Query: 375 GVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
             +  EYR   R+  ++DF EG+RA ++DKD+
Sbjct: 298 EALDLEYRFTYRAQGQADFLEGIRAAIIDKDR 329

>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353

Iteration: 1
 Score =  155 bits (393), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/331 (33%), Positives = 169/331 (51%), Gaps = 30/331 (9%)
Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           GV ++TL+RPKA+N++   M       L  WE+D  V+ VL+ G+G R  CAG D+  + 
Sbjct: 18  GVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIY 77
Query: 136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
              + D       + +  EY L   I  Y KPY+S+MDG+ MG G+G+  HG  R+VT+ 
Sbjct: 78  HSAKADGAE--ARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDT 135
Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255
           T +AMPE GIG  PDVG +Y+ ++ P  G +G +  +TG   S  +DA+  G    YVP 
Sbjct: 136 TKMAMPEVGIGFIPDVGGTYLLSRAP--GKLGLHAALTGAPFSG-ADAIVMGFADHYVPH 192
Query: 256 GNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQI 315
             +     A++A          + A LA ++ +P   +PL      I  C++ + +V  I
Sbjct: 193 DKIDEFTRAVIA--------DGVDAALAAHAQEPPA-SPLAEQRSWIDECYTGD-TVADI 242
Query: 316 IEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSG 375
           I  L+ H + A       A EA   +   +P +L +T +   + A        +L  L  
Sbjct: 243 IAALRAHDAPA-------AGEAADLIATRSPIALSVTLESVRRAA--------KLQSLED 287
Query: 376 VMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
            ++ EYRV+  S    D  EG+RA LVDKD+
Sbjct: 288 TLRQEYRVSCASLKSHDLVEGIRAQLVDKDR 318

>pdb|3JU1|A Chain A, Crystal Structure Of Enoyl-Coa HydrataseISOMERASE FAMILY PROTEIN Length = 407

Iteration: 1
 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 171/342 (50%), Gaps = 35/342 (10%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV- 135
           V V+TL+  KALNA++LD        L+ W+ DP + CV+++GSG +AFCAG D++ +  
Sbjct: 52  VGVVTLNVEKALNALDLDXVRAXTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYH 111
Query: 136 AEIQKDRNTPLVPKVF-TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
           A +        V KVF   EY L   +  Y KP +   DG+  G G+G+     +++VTE
Sbjct: 112 ASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVXGGGLGLXAGASHKVVTE 171
Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 254
            + +A PE  IGL+PDVG SY   + P  G  G +LG+T    +  +DA + GL   Y+ 
Sbjct: 172 TSRIAXPEVTIGLYPDVGGSYFLNRXP--GKXGLFLGLTAYHXNA-ADACYVGLADHYLN 228
Query: 255 SGNLGSLKEALLAVTFSEDP---HQDIVALLAKYSSD---PEGEAPLKLLLPQITSCFSS 308
             +     +A   + +S+ P   HQ +   + + S+    P+G++ L            S
Sbjct: 229 RDDKELXFDAXATLDWSDSPALNHQRLDTXINELSNQVDIPKGDSVLA----------ES 278
Query: 309 EKSVRQI----IEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG 364
           ++ + ++    + ++    S+  T  A W  +A      G+P S  L        A    
Sbjct: 279 QEXIDRLXAGSLTDIVTRXSTLSTDEA-WLSKACATXLAGSPISWHL--------AYIQT 329
Query: 365 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
           +   +LS L+   K+E  V++    + DF EGVRA+L+DKD+
Sbjct: 330 QLGTKLS-LAQCFKWELTVSVNVCAKGDFCEGVRALLIDKDK 370

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 114/254 (44%), Gaps = 37/254 (14%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVAV+TL  P   N+  +++  +  +     + DP V+ +++ G+ P AFC+G  I   
Sbjct: 15  DGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGA-PPAFCSGAQISAA 73
Query: 135 VAEIQKDRN-----TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRY 189
                  RN     +P+ P  F           E + P I+ ++G  +G G+ ++ H   
Sbjct: 74  AETFAAPRNPDFSASPVQPAAF-----------ELRTPVIAAVNGHAIGIGMTLALHADI 122
Query: 190 RIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLG 249
           RI+ E+   A+P+   G+ PD   ++       G +V A L +TG   S    A+  GL 
Sbjct: 123 RILAEEGRYAIPQVRFGVAPDA-LAHWTLPRLVGTAVAAELLLTGASFSA-QRAVETGLA 180
Query: 250 TDYVPSGN-LGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLL--PQITSCF 306
              +P+G  LG+      A+  + D   ++          PE  A  K LL   Q+T   
Sbjct: 181 NRCLPAGKVLGA------ALRMAHDIATNVA---------PESAALTKRLLWDAQMTGMS 225
Query: 307 SSEKSVRQIIEELK 320
           ++E + R+  + L+
Sbjct: 226 AAEVAARETADHLR 239

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 15/194 (7%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           VA+IT+DRP A NA+N  +       L+E + DP V  V+I G+G ++FCAG D+K    
Sbjct: 25  VALITIDRPDARNAVNGAVSTAVGDALEEAQRDPEVWAVVITGAGDKSFCAGADLKA--- 81
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEY-KKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
            I +  N   +      E+     +  +  KP I+ ++G  +G G  ++      I  E 
Sbjct: 82  -ISRGEN---LYHAEHPEWGFAGYVHHFIDKPTIAAVNGTALGGGSELALASDLVIACES 137
Query: 196 TLLAMPENGIGLFPDVGFSY-IAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 254
               +PE   GL    G  + I  + P    V   L +TG+ + T SDAL  GL  + VP
Sbjct: 138 ASFGLPEVKRGLIAGAGGVFRIVEQLP--RKVALELVLTGEPM-TASDALRWGLINEVVP 194
Query: 255 SGNLGSLKEALLAV 268
               G++ EA LA+
Sbjct: 195 D---GTVVEAALAL 205

>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 9/140 (6%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           VA +TL+RP  LNA    M+ +    L +  +DP V+CV+I G+G RAFCAG D+ GV  
Sbjct: 13  VAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAG-RAFCAGEDLSGVTE 71
Query: 137 EIQKDRNTPLVPKVFTAEYSLICK-ISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
           E+           V  + Y+ + K +   +KP ++ ++G   G G+ ++    +R+++EK
Sbjct: 72  EMDHG-------DVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEK 124
Query: 196 TLLAMPENGIGLFPDVGFSY 215
              A     +GL PD G  Y
Sbjct: 125 ASFAPAFIHVGLVPDAGHLY 144

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 13/219 (5%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +I L+RPKALNA+   +  +    L+ +E DP V  +++ G G +AF AG DIK    
Sbjct: 15  VGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG-GEKAFAAGADIK---- 69
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
           E+Q           F + +  I +I   KKP I+ ++G  +G G  ++         EK 
Sbjct: 70  EMQNRTFQDCYSGKFLSHWDHITRI---KKPVIAAVNGYALGGGCELAMMCDIIYAGEKA 126
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
               PE  +G  P  G +    +   G S+   + +TG RIS   DA  AGL +   P  
Sbjct: 127 QFGQPEILLGTIPGAGGTQRLTRAV-GKSLAMEMVLTGDRISA-QDAKQAGLVSKIFPVE 184
Query: 257 NLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPL 295
            L  ++EA+       +  + IVA +AK S +   E  L
Sbjct: 185 TL--VEEAIQCAEKIANNSKIIVA-MAKESVNAAFEMTL 220

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 9/175 (5%)
Query: 75  NGVAVITLDRPKALNAMNLDM-DIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           N V  +TL+RP+ALNA N  + D   ++ LD    DP+V  VL+ GSG R F AG D+  
Sbjct: 14  NRVRTLTLNRPEALNAFNEALYDATAQALLDA-ADDPQVAVVLLTGSG-RGFSAGTDL-- 69
Query: 134 VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             AE+Q     P   +       LI  ++ + KP I  ++G+ +G G  I G+     ++
Sbjct: 70  --AEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMS 127
Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL 248
               L  P   +G+ P+   SY+  +  G  +  A+L M+ + I    +AL  GL
Sbjct: 128 STARLKCPFTSLGVAPEAASSYLLPQLVGRQN-AAWLLMSSEWIDA-EEALRMGL 180

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 13/219 (5%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +I L+RPKALNA+   +  +    L+ +E DP V  +++ G G +AF AG DIK    
Sbjct: 17  VGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG-GEKAFAAGADIK---- 71
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
           E+Q           F + +  I +I   KKP I+ ++G  +G G  ++         EK 
Sbjct: 72  EMQNRTFQDCYSGKFLSHWDHITRI---KKPVIAAVNGYALGGGCELAMMCDIIYAGEKA 128
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
               PE  +G  P  G +    +   G S+   + +TG RIS   DA  AGL +   P  
Sbjct: 129 QFGQPEILLGTIPGAGGTQRLTRAV-GKSLAMEMVLTGDRISA-QDAKQAGLVSKIFPVE 186
Query: 257 NLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPL 295
            L  ++EA+       +  + IVA +AK S +   E  L
Sbjct: 187 TL--VEEAIQCAEKIANNSKIIVA-MAKESVNAAFEMTL 222

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 13/219 (5%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +I L+RPKALNA+   +  +    L+ +E DP V  +++ G G +AF AG DIK    
Sbjct: 18  VGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG-GEKAFAAGADIK---- 72
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
           E+Q           F + +  I +I   KKP I+ ++G  +G G  ++         EK 
Sbjct: 73  EMQNRTFQDCYSGKFLSHWDHITRI---KKPVIAAVNGYALGGGCELAMMCDIIYAGEKA 129
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
               PE  +G  P  G +    +   G S+   + +TG RIS   DA  AGL +   P  
Sbjct: 130 QFGQPEILLGTIPGAGGTQRLTRAV-GKSLAMEMVLTGDRISA-QDAKQAGLVSKIFPVE 187
Query: 257 NLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPL 295
            L  ++EA+       +  + IVA +AK S +   E  L
Sbjct: 188 TL--VEEAIQCAEKIANNSKIIVA-MAKESVNAAFEMTL 223

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 18/209 (8%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V  +TL+RP+A NA++  +  ++   L + E+D  V  V+I G+ P  FCAG+D+K    
Sbjct: 18  VRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITGADP-VFCAGLDLK---- 72
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
           E+      P +   + A            KP I  ++G  +  G+ ++ +    I +E  
Sbjct: 73  ELGGSSALPDISPRWPA----------LTKPVIGAINGAAVTGGLELALYCDILIASENA 122
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
             A     +GL P  G S    +  G G +   + +TG  +S  +DAL AGL T+ VP  
Sbjct: 123 RFADTHARVGLLPTWGLSVRLPQKVGIG-LARRMSLTGDYLSA-ADALRAGLVTEVVPHD 180
Query: 257 NLGSLKEALLAVTFSEDPHQDIVALLAKY 285
            L    +A +A +   +    + ALLA Y
Sbjct: 181 QLLGAAQA-VAASIVGNNQNAVRALLASY 208

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 107/242 (44%), Gaps = 15/242 (6%)
Query: 56  FATMAAAGAEEFV--KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVK 113
           F +MA+    E++  +     N V +I L+RPKALNA+   +  +    L  +E DP V 
Sbjct: 20  FQSMASGANFEYIIAEKRGKNNTVGLIQLNRPKALNALCDGLIDELNQALKIFEEDPAVG 79
Query: 114 CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD 173
            +++ G G +AF AG DIK    E+Q           F   +     +++ KKP I+ ++
Sbjct: 80  AIVLTG-GDKAFAAGADIK----EMQNLSFQDCYSSKFLKHWD---HLTQVKKPVIAAVN 131
Query: 174 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 233
           G   G G  ++         EK   A PE  IG  P  G +    +   G S+   + +T
Sbjct: 132 GYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAV-GKSLAMEMVLT 190
Query: 234 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEA 293
           G RIS   DA  AGL +   P   + +L E  +        +  IV  +AK S +   E 
Sbjct: 191 GDRISA-QDAKQAGLVSKICP---VETLVEEAIQCAEKIASNSKIVVAMAKESVNAAFEM 246
Query: 294 PL 295
            L
Sbjct: 247 TL 248

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 17/200 (8%)
Query: 61  AAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS 120
           A GA    +GNV      VIT++RP+A NA+N  + I     L+E + DP V+ V++ G+
Sbjct: 8   APGALAERRGNVM-----VITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGA 62
Query: 121 GPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEY-KKPYISLMDGVTMGF 179
           G ++FCAG D+K +    +++   P  P     E+     +  +  KP I+ ++G  +G 
Sbjct: 63  GDKSFCAGADLKAIAR--RENLYHPDHP-----EWGFAGYVRHFIDKPTIAAVNGTALGG 115
Query: 180 GIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY-IAAKGPGGGSVGAYLGMTGKRIS 238
           G  ++      +  E+    +PE   GL    G  + IA + P    V   L +TG+ +S
Sbjct: 116 GTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLP--RKVAMRLLLTGEPLS 173
Query: 239 TPSDALFAGLGTDYVPSGNL 258
             + A   GL  + V +G++
Sbjct: 174 AAA-ARDWGLINEVVEAGSV 192

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 17/200 (8%)
Query: 61  AAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS 120
           A GA    +GNV      VIT++RP+A NA+N  + I     L+E + DP V+ V++ G+
Sbjct: 8   APGALAERRGNVM-----VITINRPEARNAVNAAVSIGVGDALEEAQHDPEVRAVVLTGA 62
Query: 121 GPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEY-KKPYISLMDGVTMGF 179
           G ++FCAG D+K +    +++   P  P     E+     +  +  KP I+ ++G  +G 
Sbjct: 63  GDKSFCAGADLKAIAR--RENLYHPDHP-----EWGFAGYVRHFIDKPTIAAVNGTALGG 115
Query: 180 GIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY-IAAKGPGGGSVGAYLGMTGKRIS 238
           G  ++      +  E+    +PE   GL    G  + IA + P    V   L +TG+ +S
Sbjct: 116 GTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLP--RKVAMRLLLTGEPLS 173
Query: 239 TPSDALFAGLGTDYVPSGNL 258
             + A   GL  + V +G++
Sbjct: 174 AAA-ARDWGLINEVVEAGSV 192

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 18/209 (8%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V  +TL+RP+A NA++  +  ++   L + E+D  V  V+I G+ P  FCAG+D+K    
Sbjct: 35  VRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITGADP-VFCAGLDLK---- 89
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
           E+      P +   + A            KP I  ++G  +  G+ ++ +    I +E  
Sbjct: 90  ELGGSSALPDISPRWPA----------LTKPVIGAINGAAVTGGLELALYCDILIASENA 139
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
             A     +GL P  G S    +  G G +   + +TG  +S  +DAL AGL T+ VP  
Sbjct: 140 RFADTHARVGLLPTWGLSVRLPQKVGIG-LARRMSLTGDYLSA-ADALRAGLVTEVVPHD 197
Query: 257 NLGSLKEALLAVTFSEDPHQDIVALLAKY 285
            L     A +A +   +    + ALL  Y
Sbjct: 198 QLLGAARA-VAASIVGNNQNAVRALLTSY 225

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 12/201 (5%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GV V+TL+RP+ LNA+  ++     + L E E D  V+ +L+ G+G RAF AG D+   
Sbjct: 8   DGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAG-RAFSAGQDLTEF 66
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
                 DR  P           ++  +S  +KP +  ++GV  G G+ ++  G  R+   
Sbjct: 67  -----GDRK-PDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAV 120
Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 254
                     IGL PD G S++  +  G       L +   R+S   +AL  GL    VP
Sbjct: 121 GASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELL-LLSPRLSA-EEALALGLVHRVVP 178
Query: 255 SGNLGSLKEAL-LAVTFSEDP 274
           +  L  ++EAL LA   ++ P
Sbjct: 179 AEKL--MEEALSLAKELAQGP 197

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +ITL+RP+ALNA+N  +  +  S   E + DP +  ++I GS  +AF AG DIK +  
Sbjct: 15  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-KAFAAGADIKEMAD 73
Query: 137 EIQKDRNTPLVPKVFTAE-YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
               D         FTA+ ++   K++  + P I+ + G  +G G  ++      I  + 
Sbjct: 74  LTFAD--------AFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADT 125
Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255
                PE  +G+ P +G S    +  G       L +TG+ +   ++A  +GL +  VP+
Sbjct: 126 AKFGQPEIKLGVLPGMGGSQRLTRAIGKAK-AMDLILTGRTMD-AAEAERSGLVSRVVPA 183
Query: 256 GNL 258
            +L
Sbjct: 184 DDL 186

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +ITL+RP+ALNA+N  +  +  S   E + DP +  ++I GS  +AF AG DIK +  
Sbjct: 35  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-KAFAAGADIKEMAD 93
Query: 137 EIQKDRNTPLVPKVFTAE-YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
               D         FTA+ ++   K++  + P I+ + G  +G G  ++      I  + 
Sbjct: 94  LTFAD--------AFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADT 145
Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255
                PE  +G+ P +G S    +  G       L +TG+ +   ++A  +GL +  VP+
Sbjct: 146 AKFGQPEIKLGVLPGMGGSQRLTRAIGKAKA-MDLILTGRTMDA-AEAERSGLVSRVVPA 203
Query: 256 GNL 258
            +L
Sbjct: 204 DDL 206

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +ITL+RP+ALNA+N  +  +  S   E + DP +  ++I GS  +AF AG DIK +  
Sbjct: 14  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-KAFAAGADIKEMAD 72
Query: 137 EIQKDRNTPLVPKVFTAE-YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
               D         FTA+ ++   K++  + P I+ + G  +G G  ++      I  + 
Sbjct: 73  LTFAD--------AFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADT 124
Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255
                PE  +G+ P +G S    +  G       L +TG+ +   ++A  +GL +  VP+
Sbjct: 125 AKFGQPEIKLGVLPGMGGSQRLTRAIGKAK-AMDLILTGRTMD-AAEAERSGLVSRVVPA 182
Query: 256 GNL 258
            +L
Sbjct: 183 DDL 185

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 18/193 (9%)
Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           GV +I LDRP ALNA+N  ++ +      ++++D  +  +++ GS  RAF AG DI  +V
Sbjct: 19  GVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGS-ERAFAAGADIAEMV 77
Query: 136 AEIQKDRNTPLVPKVFTAEYSLIC---KISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
                     L P     E +L+     +++ +KP ++ + G  +G G  ++      I 
Sbjct: 78  T---------LTPHQ-ARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIA 127
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            +      PE  +G+ P +G +    +  G       L +TG+ + T  +A   GL +  
Sbjct: 128 ADTARFGQPEITLGILPGLGGTQRLTRAVGKAK-AMDLCLTGRSL-TAEEAERVGLVSRI 185
Query: 253 VPSGNLGSLKEAL 265
           VP+ +L  L EAL
Sbjct: 186 VPAADL--LDEAL 196

>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 8/164 (4%)
Query: 58  TMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI 117
           +M+AA A++ V     P GVA+IT +R   LNA   D+   + + +D  E+DP ++ +++
Sbjct: 21  SMSAADAQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVL 80
Query: 118 EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICK-----ISEYKKPYISLM 172
            G G R FCAG  +    A    D+          A+  L+ +     ++  +KP I+ +
Sbjct: 81  TGRG-RGFCAGAYLGSADAAAGYDKTMAKAKDANLAD--LVGERPPHFVTMLRKPVIAAI 137
Query: 173 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYI 216
           +G  +G G+  +     R        A      GL  + G S+I
Sbjct: 138 NGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWI 181

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 10/179 (5%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V ++TL+RP A NA+N  + ++  + L+   +D  +   +I G+  R F AG D+  +  
Sbjct: 15  VLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNA-RFFAAGADLNEMA- 72
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
             +KD    L   +      L  ++  + KP I+ ++G  +G G  ++      +  E  
Sbjct: 73  --EKD----LAATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENA 126
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255
              +PE  +G+ P  G +    +   G S+ + + ++G+ I T   A  AGL +D  PS
Sbjct: 127 RFGLPEITLGIMPGAGGTQRLIRSV-GKSLASKMVLSGESI-TAQQAQQAGLVSDVFPS 183

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 17/164 (10%)
Query: 66  EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF 125
           EF+  +V   GV  +TL+RP+ LN+ N +M  +    L + E D  ++C+L+ G+G R F
Sbjct: 15  EFILSHVE-KGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAG-RGF 72
Query: 126 CAGMDIKGVVAEIQKDRNT-PLVP------KVFTAEYSLICKISEYKKPYISLMDGVTMG 178
           CAG D+         DRN  P  P       V      L+ ++++  KP I  ++GV  G
Sbjct: 73  CAGQDL--------NDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAG 124
Query: 179 FGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222
            G  ++  G   I        M  + +GL PD G +++  +  G
Sbjct: 125 AGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAG 168

>pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 17/192 (8%)
Query: 71  NVHPN-------GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPR 123
           ++HP+       GV  + ++RP+A NA+  ++ +     LDE + +  V+ V++ G+   
Sbjct: 2   SLHPHLNANLEGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGA-EH 60
Query: 124 AFCAGMDIKGVVAEIQKDRNTPL--VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGI 181
            F AG D+K  +  +Q     P   VP      + L+   +   KP I  + GV +G G+
Sbjct: 61  DFTAGNDMKDFMGFVQNPNAGPAGQVPP-----FVLLKSAARLSKPLIIAVKGVAIGIGV 115
Query: 182 GISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPS 241
            I             L  +P   +GL P+ G S +  K   G    A L  T K+ +  +
Sbjct: 116 TILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVK-QAGYHKAAELLFTAKKFNAET 174
Query: 242 DALFAGLGTDYV 253
            AL AGL  + V
Sbjct: 175 -ALQAGLVNEIV 185

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           +AV TL+   A NA +  +       +D+ E D  ++ V+I G G R F AG DIK   +
Sbjct: 16  IAVATLNHAPA-NAXSSQVXHDVTELIDQVEKDDNIRVVVIHGEG-RFFSAGADIKEFTS 73
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
             +  + T L  ++    +  + K S   KP I+ + G  +G G+  +     R  TE  
Sbjct: 74  VTEAKQATELA-QLGQVTFERVEKCS---KPVIAAIHGAALGGGLEFAXSCHXRFATESA 129
Query: 197 LLAMPENGIGLFPDVGFS 214
            L +PE  +GL P  GF+
Sbjct: 130 KLGLPELTLGLIP--GFA 145

>pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 4/130 (3%)
Query: 79  VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
           +ITL+RP +LN++N D+ +           DP  +  +I G+G RAF AG D  G + E+
Sbjct: 40  IITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAG-RAFSAGGDF-GYLKEL 97
Query: 139 QKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 198
             D +  L  K       ++  ++  + P ++ ++G  +G G  +        + E   L
Sbjct: 98  SADAD--LRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYL 155
Query: 199 AMPENGIGLF 208
           A P   +GL 
Sbjct: 156 ADPHVQVGLV 165

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 6/162 (3%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V  I+L+R +  N+++L +  + ++ L +   +   + V++ G+G +AFCAG D+K    
Sbjct: 19  VVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKE--- 75
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
             +   N   V    +   +    + +  +P I+ ++G+ +G G  +S    +RI  E  
Sbjct: 76  --RAGXNEEQVRHAVSXIRTTXEXVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESA 133
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIS 238
            L + E  + + P  G +    +  G G     +  TG+RIS
Sbjct: 134 SLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELI-YTGRRIS 174

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 6/150 (4%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK--GV 134
           +A++TL+RP+ +NAM  D+ + +K  L +   D  V+ V+I G+G + FC+G D K  G 
Sbjct: 34  IALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAG-KGFCSGADQKSAGP 92
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
           +  I       +  +       +I  +    +P I+ ++G  +G G+ ++     R+ ++
Sbjct: 93  IPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQ 152
Query: 195 KTLL--AMPENGIGLFPDVGFSYIAAKGPG 222
                 A   NG+    ++G SY+  +  G
Sbjct: 153 DAYFRAAGINNGL-TASELGLSYLLPRAIG 181

>pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Query: 78  AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAE 137
           A ITL+RP ALNA++  M  + ++   E E+D RV  +++ G+G RAFC+G D+K    E
Sbjct: 22  ATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTG-RAFCSGADVK----E 76
Query: 138 IQKDRNTPLVPKVFTAEYSLICKISE-------YKKPYISLMDGVTMGFGIGISGHGRYR 190
           I +D    +  + + + Y       E         KP ++ ++G+  G G+         
Sbjct: 77  IPEDGKV-IYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIV 135
Query: 191 IVTEKTLLAMPENGIGL 207
           I +E+     P   IGL
Sbjct: 136 IASEQATFFDPHVSIGL 152

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 12/144 (8%)
Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
           H   V  I LDRP+ LNA++  M  +    + + E+D  V+ VL+ G+G RAFC+G D+ 
Sbjct: 12  HDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAG-RAFCSGGDLT 70
Query: 133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
           G       D    +V             I+   KP I+ + G  +GFG  ++      + 
Sbjct: 71  GGDTAGAADAANRVVR-----------AITSLPKPVIAGVHGAAVGFGCSLALACDLVVA 119
Query: 193 TEKTLLAMPENGIGLFPDVGFSYI 216
              +   +    +GL PD G S +
Sbjct: 120 APASYFQLAFTRVGLMPDGGASAL 143

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 10/175 (5%)
Query: 66  EFVKGNVHPNG-VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRA 124
           EFV       G V +I L RP  LNA++  M  +  + ++ ++ + +V+ +++ G G RA
Sbjct: 3   EFVSIAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRG-RA 61
Query: 125 FCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGIS 184
           F AG DI+    E+ KD    L    +  +++   ++S  K P I+ ++G+ +G G  ++
Sbjct: 62  FAAGADIQ----EMAKDDPIRL---EWLNQFADWDRLSIVKTPMIAAVNGLALGGGFELA 114
Query: 185 GHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIST 239
                 + +       PE  +G+ P  G +    K  G      +L  TG R+S 
Sbjct: 115 LSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWL-WTGARMSA 168

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 11/189 (5%)
Query: 79  VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
           ++T++RP   NA++ +M        D  ++DP ++C ++ G+G   FCAGMD+K    + 
Sbjct: 32  IVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAG-GYFCAGMDLKAATKKP 90
Query: 139 QKD--RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
             D  ++    P    A    + K    KKP I+ ++G  +  G  I      R+  E  
Sbjct: 91  PGDSFKDGSYDPSRIDA----LLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESA 146
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
              + E    L+P +G S +        +V   L +TG+ I T ++A   GL    VP G
Sbjct: 147 KFGISEAKWSLYP-MGGSAVRLVRQIPYTVACDLLLTGRHI-TAAEAKEMGLVGHVVPDG 204
Query: 257 NLGSLKEAL 265
              +L +AL
Sbjct: 205 Q--ALTKAL 211

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 9/149 (6%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA IT+  P+  NA+++    +    L+  E D  V  V+I G+   AFCAG  ++  
Sbjct: 11  DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLR-- 67
Query: 135 VAEIQKDRNTPLVPKVFTAE----YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYR 190
             EI  D+    V   F       + +I KI   K+P ++ ++GV  G G+GIS      
Sbjct: 68  --EIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMA 125
Query: 191 IVTEKTLLAMPENGIGLFPDVGFSYIAAK 219
           I  +        + IG+  D   SY  A+
Sbjct: 126 ICADSAKFVCAWHTIGIGNDTATSYSLAR 154

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 9/149 (6%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA IT+  P+  NA+++    +    L+  E D  V  V+I G+   AFCAG  ++  
Sbjct: 11  DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLR-- 67
Query: 135 VAEIQKDRNTPLVPKVFTAE----YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYR 190
             EI  D+    V   F       + +I KI   K+P ++ ++GV  G G+GIS      
Sbjct: 68  --EIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMA 125
Query: 191 IVTEKTLLAMPENGIGLFPDVGFSYIAAK 219
           I  +        + IG+  D   SY  A+
Sbjct: 126 ICADSAKFVCAWHTIGIGNDTATSYSLAR 154

>pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 8/143 (5%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GV  +TL+RP+A NA++  M             D  V+ V++  SG +AFCAG D+K +
Sbjct: 34  RGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASG-KAFCAGHDLKEM 92
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
            AE  ++       K+F     ++  I     P I+ + G+    G  +       + T 
Sbjct: 93  RAEPSRE----YYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATR 148
Query: 195 KTLLAMPENGIGLF---PDVGFS 214
               A+    +GLF   P V  S
Sbjct: 149 DARFAVSGINVGLFCSTPGVALS 171

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA IT+  P+  NA+++    +    L+  E D  V  V+I G+   AFCAG  ++  
Sbjct: 11  DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLR-- 67
Query: 135 VAEIQKDRNTPLVPKVFTAE----YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYR 190
             EI  D+    V   F         +I KI   K+P ++ ++GV  G G+GIS      
Sbjct: 68  --EIPLDKGVAGVRDHFRIAALWWQQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMA 125
Query: 191 IVTEKTLLAMPENGIGLFPDVGFSYIAAK 219
           I  +        + IG+  D   SY  A+
Sbjct: 126 ICADSAKFVCAWHTIGIGNDTATSYSLAR 154

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V ++T++RP   NA++ +M  ++ +  DE + D  ++  ++ G+G  A+C G D+     
Sbjct: 19  VVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAG-SAYCVGGDLSD--G 75
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
            + +D + P +      +  L+       KP I+ ++G  +G G  +      R+  E  
Sbjct: 76  WMVRDGSAPPLDPATIGKGLLLSHT--LTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHA 133
Query: 197 LLAMPENGIGLFPDVG 212
              +PE   GL P  G
Sbjct: 134 TFGLPEVQRGLVPGAG 149

>pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V VITLD P   N  +  ++   K  L    +D  V+ V++ G   R+F AG D      
Sbjct: 10  VRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFN---- 65
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
           E+++   +  + +       L   +    KP I+ +DG  +G G   +     R++    
Sbjct: 66  EVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTA 125
Query: 197 LLAMPE--NGIG 206
              MPE  +GIG
Sbjct: 126 NFVMPELKHGIG 137

>pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V VI L+RP   NA +  M  +    L E+E+D  ++  ++ G GP  F AG+D+  V A
Sbjct: 19  VLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGP-LFTAGLDLASVAA 77
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
           EIQ      L P+     + +  +  +  KP +  + G  +  GI ++      I  E  
Sbjct: 78  EIQG--GASLTPEGGINPWQVDGR--QLSKPLLVAVHGKVLTLGIELALAADIVIADETA 133
Query: 197 LLAMPENGIGLFP 209
             A  E   G++P
Sbjct: 134 TFAQLEVNRGIYP 146

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 13/136 (9%)
Query: 74  PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           P+ +A+I L  P  +NA++  +  + ++ L +  SD  VK ++I G+    FCAG DI G
Sbjct: 13  PHSLAMIRLCNP-PVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGN-FCAGADIHG 70
Query: 134 VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             A           P +  A  SL+ +I  Y+KP ++ + GV +G G+ ++    YRI  
Sbjct: 71  FSA---------FTPGL--ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIAN 119
Query: 194 EKTLLAMPENGIGLFP 209
            K  + +PE  +G+ P
Sbjct: 120 AKARVGLPEVTLGILP 135

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 13/136 (9%)
Query: 74  PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           P+ +A+I L  P  +NA++  +  + ++ L +  SD  VK ++I G+    FCAG DI G
Sbjct: 28  PHSLAMIRLCNP-PVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGN-FCAGADIHG 85
Query: 134 VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             A           P +  A  SL+ +I  Y+KP ++ + GV +G G+ ++    YRI  
Sbjct: 86  FSA---------FTPGL--ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIAN 134
Query: 194 EKTLLAMPENGIGLFP 209
            K  + +PE  +G+ P
Sbjct: 135 AKARVGLPEVTLGILP 150

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 17/182 (9%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V  +TL+RP++ NA++ ++   +   L + ++D  V  V++ G+ P  FCAG+D+K +  
Sbjct: 19  VRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADP-VFCAGLDLKEL-- 75
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
                 +T  +P +         K  +  KP I  ++G  +  G+ ++ +    I +E  
Sbjct: 76  -----GDTTELPDISP-------KWPDMTKPVIGAINGAAVTGGLELALYCDILIASENA 123
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
             A     +GL P  G S    +  G G +   + +TG  +S   DAL AGL T+ V   
Sbjct: 124 KFADTHARVGLMPTWGLSVRLPQKVGVG-LARRMSLTGDYLSA-QDALRAGLVTEVVAHD 181
Query: 257 NL 258
           +L
Sbjct: 182 DL 183

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 8/205 (3%)
Query: 56  FATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCV 115
           F +MA   + E ++       V  + L+RP   NAMN     +     ++   D   + V
Sbjct: 20  FQSMAPDHSYESLRVTSAQKHVLHVQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAV 79
Query: 116 LIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL------VPKVFTAEYSLICKISEYKKPYI 169
           +I G+G + F AG+D+  + ++I + +   +      +  + T        I    KP I
Sbjct: 80  VISGAG-KMFTAGIDLMDMASDILQPKGDDVARISWYLRDIITRYQETFNVIERCPKPVI 138
Query: 170 SLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY 229
           + + G  +G G+ +      R   +     + E  +GL  DVG      K  G  S+   
Sbjct: 139 AAVHGGCIGGGVDLVTACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNE 198
Query: 230 LGMTGKRISTPSDALFAGLGTDYVP 254
           L  T +++    +AL +GL +   P
Sbjct: 199 LAFTARKM-MADEALGSGLVSRVFP 222

>pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 19/186 (10%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A I L   K+ N+ +L+   ++ + +D+   DP +K V++    P+ F AG DI  +
Sbjct: 17  DGIAEIHLHINKS-NSYDLEFYKEFNAAIDDIRFDPDIKVVIVXSDVPKFFSAGADINFL 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLIC-----KISEYKKPYISLMDGVTMGFGIGISGHGRY 189
            +   +          F  ++ L C     KI+   + YI+ ++G T+G G+  +     
Sbjct: 76  RSADPR----------FKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEXALACDL 125
Query: 190 RIV-TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL 248
           R    E   + +PE  +G+    G +   A+   G S      +TG+ I TP +AL  GL
Sbjct: 126 RFXGDEAGKIGLPEVSLGVLAGTGGTQRLARLI-GYSRALDXNITGETI-TPQEALEIGL 183
Query: 249 GTDYVP 254
                P
Sbjct: 184 VNRVFP 189

>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK--ISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             E+  D    ++ +    E S      +  Y KP I++++G   G G          I 
Sbjct: 76  FREV--DAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            ++    + E   G+ P    S   A   G      Y+ MTGK       A   GL  + 
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYI-MTGKTFGGQKAAEM-GLVNES 191
Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           VP   L  L+E  + +  +      +V   AK+
Sbjct: 192 VP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK--ISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             E+  D    ++ +    E S      +  Y KP I++++G   G G          I 
Sbjct: 76  FREV--DAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAIC 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            ++    + E   G+ P    S   A   G      Y+ MTGK       A   GL  + 
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYI-MTGKTFGGQKAAEM-GLVNES 191
Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           VP   L  L+E  + +  +      +V   AK+
Sbjct: 192 VP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK--ISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             E+  D    ++ +    E S      +  Y KP I++++G   G G          I 
Sbjct: 76  FREV--DAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAIC 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            ++    + E   G+ P    S   A   G      Y+ MTGK       A   GL  + 
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYI-MTGKTFGGQKAAEM-GLVNES 191
Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           VP   L  L+E  + +  +      +V   AK+
Sbjct: 192 VP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK--ISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             E+  D    ++ +    E S      +  Y KP I++++G   G G          I 
Sbjct: 76  FREV--DAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAIC 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            ++    + E   G+ P    S   A   G      Y+ MTGK       A   GL  + 
Sbjct: 134 ADEATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYI-MTGKTFGGQKAAEM-GLVNES 191
Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           VP   L  L+E  + +  +      +V   AK+
Sbjct: 192 VP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK--ISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             E+  D    ++ +    E S      +  Y KP I++++G   G G          I 
Sbjct: 76  FREV--DAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAIC 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            ++    + E   G+ P    S   A   G      Y+ MTGK       A   GL  + 
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYI-MTGKTFGGQKAAEM-GLVNES 191
Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           VP   L  L+E  + +  +      +V   AK+
Sbjct: 192 VP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 12/196 (6%)
Query: 71  NVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
            V    VAV+ L+ P+  N ++ +  +     LD+ E+DP V+ V++ G G +AF AG D
Sbjct: 3   QVEKGHVAVVFLNDPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGAD 61
Query: 131 IKGV--VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR 188
           +  +  V E+  + N     +   +   L  ++  Y KP ++ ++G  +  G G++    
Sbjct: 62  LAFLERVTELGAEENY----RHSLSLXRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACD 117
Query: 189 YRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL 248
             +  E+  L   E  IG F     S I  +  G  +    L +TG R+    +A   GL
Sbjct: 118 LVVXDEEARLGYTEVKIG-FVAALVSVILVRAVGEKAAKDLL-LTG-RLVEAREAKALGL 174
Query: 249 GTDYVPSGNLGSLKEA 264
                P G   +L+EA
Sbjct: 175 VNRIAPPGK--ALEEA 188

>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK--ISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             E+  D    ++ +    E S      +  Y KP I++++G   G G          I 
Sbjct: 76  FREV--DAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            ++    + E   G+ P    S   A   G      Y+ MTGK       A   GL  + 
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYI-MTGKTFGGQKAAEM-GLVNES 191
Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           VP   L  L+E  + +  +      +V   AK+
Sbjct: 192 VP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 13/136 (9%)
Query: 74  PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           P+ +A+I L  P  +NA++  +  + ++ L +  SD  VK ++I G+    FCAG DI G
Sbjct: 28  PHSLAMIRLCNP-PVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGN-FCAGADIHG 85
Query: 134 VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             A           P +  A  SL+ +I  Y+KP ++ + GV +G G+ ++    YRI  
Sbjct: 86  FSA---------FTPGL--ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIAN 134
Query: 194 EKTLLAMPENGIGLFP 209
            K  + +P   +G+ P
Sbjct: 135 AKARVGLPAVTLGILP 150

>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK--ISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             E+  D    ++ +    E S      +  Y KP I++++G   G G          I 
Sbjct: 76  FREV--DAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            ++    + E   G+ P    S   A   G      Y+ MTGK       A   GL  + 
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYI-MTGKTFGGQKAAEM-GLVNES 191
Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           VP   L  L+E  + +  +      +V   AK+
Sbjct: 192 VP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK--ISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             E+  D    ++ +    E S      +  Y KP I++++G   G G          I 
Sbjct: 76  FREV--DAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            ++    + E   G+ P    S   A   G      Y+ MTGK       A   GL  + 
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYI-MTGKTFGGQKAAEM-GLVNES 191
Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           VP   L  L+E  + +  +      +V   AK+
Sbjct: 192 VP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK--ISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             E+  D    ++ +    E S      +  Y KP I++++G   G G          I 
Sbjct: 76  FREV--DAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            ++    + E   G+ P    S   A   G      Y+ MTGK       A   GL  + 
Sbjct: 134 ADEATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYI-MTGKTFGGQKAAEM-GLVNES 191
Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           VP   L  L+E  + +  +      +V   AK+
Sbjct: 192 VP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 105/250 (42%), Gaps = 35/250 (14%)
Query: 80  ITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQ 139
           + L+RP+  NAMN     +      +   D   + V++ G+G + F +G+D+  + ++I 
Sbjct: 17  VQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDMASDIL 75
Query: 140 KDRNTPLVPKVFTAEYSLICKISEYKK----------PYISLMDGVTMGFGIGISGHGRY 189
           +    P    V    + L   IS Y+K          P I+ + G  +G G+ +      
Sbjct: 76  Q----PPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDI 131
Query: 190 RIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLG 249
           R  T+     + E  +GL  DVG      K  G  S+   L  T +++    +AL +GL 
Sbjct: 132 RYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKM-MADEALDSGLV 190
Query: 250 TDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSE 309
           +   P       K+ +L   F         AL A  SS    ++P+ +   +I   +S +
Sbjct: 191 SRVFPD------KDVMLNAAF---------ALAADISS----KSPVAVQGSKINLIYSRD 231
Query: 310 KSVRQIIEEL 319
            SV + ++ +
Sbjct: 232 HSVDESLDYM 241

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           VA +TL+ P   NA++  +  +    L +  SDP V+ V++  +G   FCAG D+    +
Sbjct: 21  VARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGG-TFCAGADLSEAGS 79
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
                    +  +      +L+  I E + P I+ +DG     G G+ G     +   ++
Sbjct: 80  GGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRS 139
Query: 197 LLAMPENGIGLFPDV 211
             A+ E  IG+ P +
Sbjct: 140 SFALTEARIGVAPAI 154

>pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 5/175 (2%)
Query: 84  RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143
           R    NA+N ++  +  + L+   +D   K VL   +G   FC G+D    V  ++ DRN
Sbjct: 22  RSTEKNALNTEVIKEMVNALNSAAADDS-KLVLFSAAGS-VFCCGLDFGYFVRHLRNDRN 79
Query: 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN 203
           T  +  V T + + +    ++KKP +  ++G  +G G  I          EK     P  
Sbjct: 80  TASLEMVDTIK-NFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYT 138
Query: 204 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 258
             G  PD   S    K  G  S    L + G+++ T  +A   GL +    +G  
Sbjct: 139 TFGQSPDGCSSITFPKMMGKASANEML-IAGRKL-TAREACAKGLVSQVFLTGTF 191

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 19/150 (12%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V  I L+RPK  NA+N  +    K  L +     +++ V+I G G   F AG+D+  +  
Sbjct: 26  VLTIGLNRPKKRNALNDGLMAALKDCLTDIPD--QIRAVVIHGIGDH-FSAGLDLSELR- 81
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
             ++D    LV       + +  KI   + P I+ + G  +G G+ ++     R+     
Sbjct: 82  --ERDATEGLVHS--QTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASA 137
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226
             A+PE   G+F  VG         GGGSV
Sbjct: 138 YYALPEGSRGIF--VG---------GGGSV 156

>pdb|1XX4|A Chain A, Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Coa Length = 261

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 117/257 (45%), Gaps = 20/257 (7%)
Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           G+AV+    P  +N+++L+   ++   L++ E+D  ++ V++    P  F AG+D+  + 
Sbjct: 15  GIAVMKFKNP-PVNSLSLEFLTEFVISLEKLENDKSIRGVILTSERPGIFSAGLDLMEMY 73
Query: 136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE- 194
                 RN     + + A   L  ++       IS ++G +   G  ++    YRI+ + 
Sbjct: 74  G-----RNPAHYAEYWKAVQELWLRLYLSNLTLISAINGASPAGGCLMALTCDYRIMADN 128
Query: 195 -KTLLAMPENGIGLFPDVGF--SYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 251
            K  + + E+ +G+        +Y+   G         LG     +  P++AL  GL  +
Sbjct: 129 SKYTIGLNESLLGIVAPFWLKDNYVNTIGHRAAERALQLGT----LFPPAEALKVGLVDE 184
Query: 252 YVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSD---PEGEAPLKLLLPQITSCF 306
            VP   + S   +++A  F+   H  Q   +++ K ++D    + EA ++     I+   
Sbjct: 185 VVPEDQVHSKARSVMAKWFTIPDHSRQLTKSMMRKATADNLIKQREADIQNFTSFISRD- 243
Query: 307 SSEKSVRQIIEELKKHQ 323
           S +KS+   +E+LK+ +
Sbjct: 244 SIQKSLHVYLEKLKQKK 260

>pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 70  GNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGM 129
           G V   GV  +TL R  A + ++          L     D  V  ++I G G R FCAG 
Sbjct: 10  GEVLSEGVLTLTLGRAPA-HPLSRAXIAALHDALRRAXGDDHVHVLVIHGPG-RIFCAGH 67
Query: 130 DIKGVVAEIQKDRNTP-----LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGI 181
           D+K    EI + R  P      V  +F A  +L   ++   KP I+L++G+    G+
Sbjct: 68  DLK----EIGRHRADPDEGRAFVTDLFEACSALXLDLAHCPKPTIALVEGIATAAGL 120

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVAVITL  P  +N+++ D+    KS  +E  S   VK ++I G+  R F  G DI G 
Sbjct: 16  DGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGR-FSGGFDISGF 73
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEY-KKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             E+QK       PK       +I  + E  +KP ++ +DG+ +G G+ ++     RI  
Sbjct: 74  -GEMQKGNVKE--PKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISA 130
Query: 194 EKTLLAMPENGIGLFPDVG 212
               L +PE  +G+ P  G
Sbjct: 131 PAAQLGLPELQLGVIPGFG 149

>pdb|3G64|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Streptomyces Coelicolor A3(2) Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA +TL RP  LNA+  +     +  L E      V+ +++ G G R FC+G D+  +
Sbjct: 25  DGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEG-RGFCSGGDVDEI 83
Query: 135 V 135
           +
Sbjct: 84  I 84

>pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 5/180 (2%)
Query: 79  VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
           ++   R    NA+N ++  +  + L+   +D   K VL   +G   FC G+D    V  +
Sbjct: 36  IVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAG-SVFCCGLDFGYFVKHL 93
Query: 139 QKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 198
           + +RNT  +  V T + + +    ++KKP +  ++G  +G G  I          EK   
Sbjct: 94  RNNRNTASLEMVDTIK-NFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWF 152
Query: 199 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 258
             P    G  PD   S    K  G  S    L + G+++ T  +A   GL +    +G  
Sbjct: 153 QTPYTTFGQSPDGCSSITFPKMMGKASANEML-IAGRKL-TAREACAKGLVSQVFLTGTF 210

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 29/260 (11%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD--IK 132
           NG+A IT++RP+  NA       +      +   D  +  +++ G+G +AFC+G D  ++
Sbjct: 20  NGIAKITINRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGAGGKAFCSGGDQKVR 79
Query: 133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
           G    + +D     +P++   +   + ++    KP I+++ G  +G G  +       I 
Sbjct: 80  GHGGYVGEDE----IPRLNVLDLQRLIRV--IPKPVIAMVAGYAIGGGHVLHVVCDLTIA 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK-------RISTPSDALF 245
            +  +       +G F D G+        G G +   +G           R  T  +AL 
Sbjct: 134 ADNAIFGQTGPKVGSF-DGGY--------GAGYLARIVGHKKAREIWYLCRQYTAQEALE 184
Query: 246 AGLGTDYVPSGNLGSLKEALL--AVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT 303
            GL    VP   L  L+E  +  A    E     I  L A +++D +G A ++ L    T
Sbjct: 185 MGLVNKVVP---LEQLEEETVKWAQEILEKSPTAIRFLKAAFNADSDGLAGIQQLAGDAT 241
Query: 304 SCFSSEKSVRQIIEELKKHQ 323
             F + +  ++ +   K+ +
Sbjct: 242 LLFYTTEEAKEGMRAFKEKR 261

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           V +IT++RP A NA+N  +     +  D+ +S   +   +I G+G   FCAGMD+K  V
Sbjct: 17  VLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGN-FCAGMDLKAFV 74

>pdb|3NJB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis, Iodide Soak Length = 333

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDI 131
           VA IT +RP+  NA+  D  ++  + ++  + DP V  +L+ G G   FCAG D+
Sbjct: 45  VARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRG-EGFCAGFDL 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	414
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	1e-126
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	1e-125
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	1e-30
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	2e-28
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	2e-28
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	7e-28
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	9e-28
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	1e-27
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	3e-27
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	6e-27
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	9e-27
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	1e-26
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	2e-26
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	5e-26
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	2e-25
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	2e-25
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	2e-25
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	2e-25
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	3e-25
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	7e-25
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	9e-25
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	3e-24
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	6e-24
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	8e-24
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	1e-23
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	2e-23
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	2e-23
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	2e-23
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	3e-23
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	3e-23
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	4e-23
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	5e-23
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	1e-22
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	2e-22
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	2e-22
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	2e-22
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	2e-22
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	3e-22
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	3e-22
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	3e-22
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	5e-22
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	7e-22
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	8e-22
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	9e-22
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	1e-21
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	2e-21
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	2e-21
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	3e-21
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	4e-21
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	4e-21
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	4e-21
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	5e-21
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	5e-21
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	1e-20
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	2e-20
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	3e-20
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	4e-20
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	4e-20
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	6e-20
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	8e-20
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	1e-19
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	1e-19
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	1e-19
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	4e-19
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	4e-19
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	7e-19
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	8e-19
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	2e-18
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	4e-18
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	1e-17
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	3e-17
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	1e-16
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	9e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score =  370 bits (951), Expect = e-126
 Identities = 108/382 (28%), Positives = 179/382 (46%), Gaps = 27/382 (7%)

Query: 33  HQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMN 92
           H  +     L F    T+   +   + A                V V+TL+  KALNA++
Sbjct: 8   HHHSSGRENLYFQGHMTNLVDKAAHSFATQNVVFQTLATASGKLVGVVTLNVEKALNALD 67

Query: 93  LDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV--AEIQKDRNTPLVPKV 150
           LDM       L+ W+ DP + CV+++GSG +AFCAG D++ +   +   K + T +    
Sbjct: 68  LDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVF 127

Query: 151 FTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD 210
           F  EY L   +  Y KP +   DG+ MG G+G+     +++VTE + +AMPE  IGL+PD
Sbjct: 128 FEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPD 187

Query: 211 VGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTF 270
           VG SY   + PG   +G +LG+T   ++  +DA + GL   Y+   +   + +A+  + +
Sbjct: 188 VGGSYFLNRMPGK--MGLFLGLTAYHMN-AADACYVGLADHYLNRDDKELMFDAMATLDW 244

Query: 271 SEDP---HQDIVALLAKYSSD---PEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQS 324
           S+ P   HQ +  ++ + S+    P+G++ L      I    +   S+  I+  +    +
Sbjct: 245 SDSPALNHQRLDTMINELSNQVDIPKGDSVLAESQEMIDRLMAG--SLTDIVTRMSTLST 302

Query: 325 SAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA 384
                   W  +A   M  G+P S  L                     L+   K+E  V+
Sbjct: 303 DEA-----WLSKACATMLAGSPISWHLAYIQTQLGTKL---------SLAQCFKWELTVS 348

Query: 385 LRSSLRSDFAEGVRAVLVDKDQ 406
           +    + DF EGVRA+L+DKD+
Sbjct: 349 VNVCAKGDFCEGVRALLIDKDK 370

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score =  365 bits (940), Expect = e-125
 Identities = 123/336 (36%), Positives = 183/336 (54%), Gaps = 28/336 (8%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
               VITL+RPK LNA+ L+M  +    L +WE DP    ++I+G+G +AFCAG DI+ +
Sbjct: 14  GCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVI 73

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
               +      + P  F  EY L   +   +KPY++L+ G+TMG G+G+S HG++R+ TE
Sbjct: 74  SEAEKAK--QKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATE 131

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 254
           K L AMPE  IGLFPDVG  Y   +  G   +G +L +TG R+    D   AG+ T +V 
Sbjct: 132 KCLFAMPETAIGLFPDVGGGYFLPRLQGK--LGYFLALTGFRLK-GRDVYRAGIATHFVD 188

Query: 255 SGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP----EGEAPLKLLLPQITSCFSSEK 310
           S  L  L+E LLA+       ++I ++L  Y ++     +    L+  + +I SCFS+  
Sbjct: 189 SEKLAMLEEDLLALKSPS--KENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSAN- 245

Query: 311 SVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNEL 370
           +V +IIE L++  S        +A E L+ + K +P SL +T +         G +    
Sbjct: 246 TVEEIIENLQQDGS-------SFALEQLKVINKMSPTSLKITLRQLM-----EGSSKT-- 291

Query: 371 SKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQ 406
             L  V+  EYR++       DF EGVRAVL+DKDQ
Sbjct: 292 --LQEVLTMEYRLSQACMRGHDFHEGVRAVLIDKDQ 325

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  118 bits (298), Expect = 1e-30
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 18/227 (7%)

Query: 47  PQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEW 106
                 ++   +M+AA A++ V     P GVA+IT +R   LNA   D+   + + +D  
Sbjct: 10  GTLEAQTQGPGSMSAADAQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRA 69

Query: 107 ESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS---LICKISE 163
           E+DP ++ +++ G G R FCAG  +    A    D+          A+         ++ 
Sbjct: 70  EADPGIRVIVLTGRG-RGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTM 128

Query: 164 YKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY-----IAA 218
            +KP I+ ++G  +G G+  +     R        A      GL  + G S+        
Sbjct: 129 LRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLT-- 186

Query: 219 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 265
                 +V   L ++G+      +A   GL  + V    L  +  AL
Sbjct: 187 ----SWAVALDLLLSGRTFL-AEEAAQLGLVKEVVTPEQL--MPRAL 226

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  111 bits (280), Expect = 2e-28
 Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 26/219 (11%)

Query: 61  AAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS 120
             G+   +        V  I LDRP+ LNA++  M  +    + + E+D  V+ VL+ G+
Sbjct: 1   GPGSMNGISVEHD-GAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGA 59

Query: 121 GPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFG 180
           G RAFC+G D+ G       D    +V             I+   KP I+ + G  +GFG
Sbjct: 60  G-RAFCSGGDLTGGDTAGAADAANRVVR-----------AITSLPKPVIAGVHGAAVGFG 107

Query: 181 IGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY----LGMTGKR 236
             ++      +    +   +    +GL PD G S +         +G      + MT ++
Sbjct: 108 CSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPL-----LIGRARTSRMAMTAEK 162

Query: 237 ISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 274
           IS    A   G+ +    +           +  + S  P
Sbjct: 163 ISAA-TAFEWGMISHITSADEY--ESVLTDVLRSVSGGP 198

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  111 bits (279), Expect = 2e-28
 Identities = 60/205 (29%), Positives = 90/205 (43%), Gaps = 18/205 (8%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           N V  +TL+RP+ALNA N  +       L +   DP+V  VL+ GSG R F AG D+   
Sbjct: 14  NRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSG-RGFSAGTDLA-- 70

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E+Q     P   +       LI  ++ + KP I  ++G+ +G G  I G+     ++ 
Sbjct: 71  --EMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSS 128

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----AYLGMTGKRISTPSDALFAGLGT 250
              L  P   +G+ P+   SY+  +      VG    A+L M+ + I    +AL  GL  
Sbjct: 129 TARLKCPFTSLGVAPEAASSYLLPQ-----LVGRQNAAWLLMSSEWIDAE-EALRMGLVW 182

Query: 251 DYVPSGNLGSLKEAL-LAVTFSEDP 274
                  L  L EA   A   +  P
Sbjct: 183 RICSPEEL--LPEARRHAEILAAKP 205

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  109 bits (276), Expect = 7e-28
 Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 14/205 (6%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA IT+  P+  NA+++    +    L+  E D  V  V+I G+   AFCAG  ++ +
Sbjct: 11  DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE-DAFCAGFYLREI 69

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             +                 + +I KI   K+P ++ ++GV  G G+GIS      I  +
Sbjct: 70  PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY----LGMTGKRISTPSDALFAGLGT 250
                   + IG+  D   SY  A+      VG      L +T + +  P +A   GL +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLAR-----IVGMRRAMELMLTNRTLY-PEEAKDWGLVS 183

Query: 251 DYVPSGNLGSLKEAL-LAVTFSEDP 274
              P       + A  +A   +  P
Sbjct: 184 RVYPKDEF--REVAWKVARELAAAP 206

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  109 bits (274), Expect = 1e-27
 Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 22/206 (10%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             VA +TL+RP  LNA    M+ +    L +  +DP V+CV+I G+G RAFCAG D+ GV
Sbjct: 11  GQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAG-RAFCAGEDLSGV 69

Query: 135 VAEIQKDRNTPLVPKVFTAEYS-LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             E+           V  + Y+ ++  +   +KP ++ ++G   G G+ ++    +R+++
Sbjct: 70  TEEMDHGD-------VLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLS 122

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY----LGMTGKRISTPSDALFAGLG 249
           EK   A     +GL PD G  Y   +      VG      L + G++++   +A   GL 
Sbjct: 123 EKASFAPAFIHVGLVPDAGHLYYLPR-----LVGRAKALELAVLGEKVTAE-EAAALGLA 176

Query: 250 TDYVPSGNLGSLKEAL-LAVTFSEDP 274
           T  +P  +    +E    A   S  P
Sbjct: 177 TKVIPLSDW--EEEVKQFAERLSAMP 200

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  108 bits (271), Expect = 3e-27
 Identities = 34/204 (16%), Positives = 75/204 (36%), Gaps = 25/204 (12%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           N    ITLD P+  N ++ ++       +    ++  +  ++++      F +G  ++  
Sbjct: 12  NDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLED- 70

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
           +     D++   + +V       + +I    K  ++L++G   G G  +      RI   
Sbjct: 71  LLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALR 130

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAY----LGMTGKRISTPSDAL 244
           +       + +G+ PD            G S      +G      L + GK  ++  +AL
Sbjct: 131 RAKFLENFHKMGISPD-----------LGASYFLPRIIGYEQTMNLLLEGKLFTSE-EAL 178

Query: 245 FAGLGTDYVPSGNLGSLKEALLAV 268
             GL  +   +     L+E +   
Sbjct: 179 RLGLIQEICENKQE--LQERVKNY 200

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  107 bits (270), Expect = 6e-27
 Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 25/223 (11%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
               +I L  P  LNA+  +  I     L+  + +  V   +I+ SG R F +G D KG+
Sbjct: 17  GPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG-RFFSSGADFKGI 75

Query: 135 VAEIQKDRNTP------LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR 188
                 D N         V         +     ++ K  I  ++G  +G    +     
Sbjct: 76  AKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCD 135

Query: 189 YRI-VTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----AYLGMTGKRISTPSDA 243
               + +K  L  P   +GL  + G +            G        M  K        
Sbjct: 136 IVYSINDKVYLLYPFANLGLITEGGTTVSLPL-----KFGTNTTYECLMFNKPFK-YDIM 189

Query: 244 LFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYS 286
              G  +             +  A  F+    +++   +    
Sbjct: 190 CENGFISKNFNM-------PSSNAEAFNAKVLEELREKVKGLY 225

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  107 bits (269), Expect = 9e-27
 Identities = 55/230 (23%), Positives = 93/230 (40%), Gaps = 16/230 (6%)

Query: 51  GNSRTFATMAAAGAE-EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESD 109
           G+   F   AA   E   ++  +  +GVA +TL RP  LNA+  +     +  L E    
Sbjct: 1   GHMSPFTGSAAPTPEWRHLRVEIT-DGVATVTLARPDKLNALTFEAYADLRDLLAELSRR 59

Query: 110 PRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS-LICKISEYKKPY 168
             V+ +++ G G R FC+G D+  ++               F      ++  + E   P 
Sbjct: 60  RAVRALVLAGEG-RGFCSGGDVDEIIGATLSM--DTARLLDFNRMTGQVVRAVRECPFPV 116

Query: 169 ISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP-DVGFSYIAAK--GPGGGS 225
           I+ + GV  G G  ++    +R+    T  A     +GL   D+G +Y+  +  G G   
Sbjct: 117 IAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLG--- 173

Query: 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 274
               L M G  +  P +A   GL ++    G     + A  LA   ++ P
Sbjct: 174 HATRLLMLGDTVRAP-EAERIGLISELTEEGRA--DEAARTLARRLADGP 220

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  106 bits (268), Expect = 1e-26
 Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 16/179 (8%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GV  + ++RP+A NA+  ++ +     LDE + +  V+ V++ G+    F AG D+K  
Sbjct: 13  GGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAE-HDFTAGNDMK-- 69

Query: 135 VAEIQKDRNTPLVPKVFTAEY-SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             +       P            L+   +   KP I  + GV +G G+ I          
Sbjct: 70  --DFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFAD 127

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----AYLGMTGKRISTPSDALFAGL 248
              L  +P   +GL P+ G S +  K       G    A L  T K+ +    AL AGL
Sbjct: 128 NTALFQIPFVSLGLSPEGGASQLLVK-----QAGYHKAAELLFTAKKFNAE-TALQAGL 180

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score =  106 bits (268), Expect = 2e-26
 Identities = 55/273 (20%), Positives = 104/273 (38%), Gaps = 37/273 (13%)

Query: 57  ATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVL 116
           A     G+  FV  +     +A++TL+RP+ +NAM  D+ + +K  L +   D  V+ V+
Sbjct: 14  AQTQGPGSMSFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVV 73

Query: 117 IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY--SLICKISEYKKPYISLMDG 174
           I G+G + FC+G D K           T     + + E    +I  +    +P I+ ++G
Sbjct: 74  ITGAG-KGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAING 132

Query: 175 VTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGA 228
             +G G+ ++     R+ ++           GL               G S      +G 
Sbjct: 133 AAIGGGLCLALACDVRVASQDAYFRAAGINNGLTA----------SELGLSYLLPRAIGT 182

Query: 229 Y----LGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLA 283
                + +TG+ +    +A   GL +  V S +L  L+E   +    +          L 
Sbjct: 183 SRASDIMLTGRDVDAD-EAERIGLVSRKVASESL--LEECYAIGERIAGFSR--PGIELT 237

Query: 284 KYS-------SDPEGEAPLKLLLPQITSCFSSE 309
           K +       +  E     + L  Q+     ++
Sbjct: 238 KRTIWSGLDAASLESHMHQEGLG-QLYVRLLTD 269

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score =  104 bits (262), Expect = 5e-26
 Identities = 47/232 (20%), Positives = 76/232 (32%), Gaps = 32/232 (13%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V VITLD P   N  +  ++   K  L    +D  V+ V++ G   R+F AG D   V
Sbjct: 8   DEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEV 67

Query: 135 VAEIQKDRNTPLVPKVFTAEY-SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
                K  +     + +      L   +    KP I+ +DG  +G G   +     R++ 
Sbjct: 68  -----KQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMA 122

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS-----VGAYLGM----TGKRISTPSDAL 244
                 MPE   G+               G +      G           + +  P   +
Sbjct: 123 STANFVMPELKHGIGCS-----------VGAAILGFTHGFSTMQEIIYQCQSLDAP-RCV 170

Query: 245 FAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYSSDPEGEAPL 295
              L    V S  L  L  A+  A   +  P      +  K + +      L
Sbjct: 171 DYRLVNQVVESSAL--LDAAITQAHVMASYPA--SAFINTKRAVNKPFIHLL 218

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  103 bits (260), Expect = 2e-25
 Identities = 38/205 (18%), Positives = 77/205 (37%), Gaps = 16/205 (7%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+  I  +RPK  NA+N +M  +    L     D  +   ++ G+G   + +G D+   
Sbjct: 34  DGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNG-DYYSSGNDLTNF 91

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
                                  +    ++ KP I++++G  +G  + + G       ++
Sbjct: 92  TDIPPGGVEEKA-KNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASD 150

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----AYLGMTGKRISTPSDALFAGLGT 250
           +     P + +G  P+   SY   K      +       + + GK+++   +A   GL T
Sbjct: 151 RATFHTPFSHLGQSPEGCSSYTFPK-----IMSPAKATEMLIFGKKLT-AGEACAQGLVT 204

Query: 251 DYVPSGNLGSLKEAL-LAVTFSEDP 274
           +  P       KE       F++ P
Sbjct: 205 EVFPDSTF--QKEVWTRLKAFAKLP 227

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  103 bits (258), Expect = 2e-25
 Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 15/193 (7%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVAV+TL  P   N+  +++  +  +     + DP V+ +++ G+   AFC+G  I   
Sbjct: 15  DGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAP-PAFCSGAQIS-- 71

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
                +    P  P    +         E + P I+ ++G  +G G+ ++ H   RI+ E
Sbjct: 72  --AAAETFAAPRNPDFSASPVQP--AAFELRTPVIAAVNGHAIGIGMTLALHADIRILAE 127

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAK--GPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
           +   A+P+   G+ PD    +   +  G    +V A L +TG   S    A+  GL    
Sbjct: 128 EGRYAIPQVRFGVAPDALAHWTLPRLVGT---AVAAELLLTGASFS-AQRAVETGLANRC 183

Query: 253 VPSGNLGSLKEAL 265
           +P+G +  L  AL
Sbjct: 184 LPAGKV--LGAAL 194

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score =  103 bits (258), Expect = 2e-25
 Identities = 43/223 (19%), Positives = 82/223 (36%), Gaps = 21/223 (9%)

Query: 59  MAAAGAE-EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI 117
           +A+  A    +       GV  IT  R + LNAM   +         + E+   V+ VL+
Sbjct: 2   LASLEARYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLL 60

Query: 118 EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS-LICKISEYKKPYISLMDGVT 176
            G G   F AG         I++ R +         E   L+     + +P ++ ++ V 
Sbjct: 61  RGEG-GVFSAGGSFG----LIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVA 115

Query: 177 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----AYLGM 232
           +G G+ ++      +V + T L      +G+        +         VG     Y  +
Sbjct: 116 VGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPL-----LVGMAKAKYHLL 170

Query: 233 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 274
             + ++   +A   GL    V    +   ++AL +A   ++ P
Sbjct: 171 LNEPLTGE-EAERLGLVALAVEDEKV--YEKALEVAERLAQGP 210

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score =  103 bits (259), Expect = 2e-25
 Identities = 48/215 (22%), Positives = 79/215 (36%), Gaps = 16/215 (7%)

Query: 48  QTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWE 107
              G          + +E  +  +    GV  +TL+RP+A NA++  M            
Sbjct: 7   HHMGTLEAQTQGPGSMSEPLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLA 66

Query: 108 SDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167
            D  V+ V++  SG  AFCAG D+K    E++ + +     K+F     ++  I     P
Sbjct: 67  EDESVRAVVLAASGK-AFCAGHDLK----EMRAEPSREYYEKLFARCTDVMLAIQRLPAP 121

Query: 168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG 227
            I+ + G+    G  +       + T     A+    +GLF       ++        VG
Sbjct: 122 VIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLFCSTPGVALSRN------VG 175

Query: 228 AYLGM----TGKRISTPSDALFAGLGTDYVPSGNL 258
                    TG+ +S   DA   GL    V    L
Sbjct: 176 RKAAFEMLVTGEFVS-ADDAKGLGLVNRVVAPKAL 209

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score =  102 bits (257), Expect = 3e-25
 Identities = 44/193 (22%), Positives = 70/193 (36%), Gaps = 10/193 (5%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GV  +TL R  A + ++  M       L     D  V  ++I G G R FCAG D+K +
Sbjct: 15  EGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPG-RIFCAGHDLKEI 72

Query: 135 VA-EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
                  D     V  +F A  +L+  ++   KP I+L++G+    G+ +         +
Sbjct: 73  GRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYAS 132

Query: 194 EKTLLAMPENGIGLFPDVGFSYIA-AKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
                 +P    G F       ++   G         + +TG        AL AGL    
Sbjct: 133 PAARFCLPGVQNGGFCTTPAVAVSRVIGRR---AVTEMALTGATYD-ADWALAAGLINRI 188

Query: 253 VPSGNLGSLKEAL 265
           +P   L       
Sbjct: 189 LPEAAL--ATHVA 199

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  101 bits (255), Expect = 7e-25
 Identities = 41/215 (19%), Positives = 76/215 (35%), Gaps = 20/215 (9%)

Query: 66  EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF 125
             ++     +GV  + LD P  LN++   M           + DP V+ VL+ G G +AF
Sbjct: 13  PSLRFEPGEHGVLNLVLDSP-GLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEG-KAF 70

Query: 126 CAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS-LICKISEYKKPYISLMDGVTMGFGIGIS 184
            +G   +     I +             E   L+  +    KP +S + G  +G G+ ++
Sbjct: 71  SSGGSFE----LIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVA 126

Query: 185 GHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----AYLGMTGKRISTP 240
                 + +    +      +G+      +           VG     Y  +T + +S  
Sbjct: 127 LLADISVASATAKIIDGHTKLGVAAGDHAAICWPL-----LVGMAKAKYYLLTCETLSGE 181

Query: 241 SDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 274
            +A   GL +  V    +  L  A  LA   ++  
Sbjct: 182 -EAERIGLVSTCVDDDEV--LPTATRLAENLAQGA 213

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  100 bits (252), Expect = 9e-25
 Identities = 35/211 (16%), Positives = 71/211 (33%), Gaps = 36/211 (17%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           NGV  IT+    + N  +  +    +        + + K V++ G G   F +G   + +
Sbjct: 11  NGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYG-NYFSSGASKEFL 69

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
                  +    V         L   I + + P I+ M G + G G+ +  +  + + ++
Sbjct: 70  -----IRKTRGEVEV-----LDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQ 119

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VG----AYLGMTGKRISTPSDAL 244
           +++ A      G  P            G  S      +G      +  TG+      +  
Sbjct: 120 ESVYATNFMKYGFTPV-----------GATSLILREKLGSELAQEMIYTGENYRGK-ELA 167

Query: 245 FAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 274
             G+    V   ++  L  A  L    ++ P
Sbjct: 168 ERGIPFPVVSRQDV--LNYAQQLGQKIAKSP 196

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score =  100 bits (251), Expect = 3e-24
 Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 29/210 (13%)

Query: 66  EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF 125
           + +  +     V  I+L+R +  N+++L +  + ++ L +   +   + V++ G+G +AF
Sbjct: 8   QNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAF 67

Query: 126 CAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG 185
           CAG D+K    E     N   V    +   + +  + +  +P I+ ++G+ +G G  +S 
Sbjct: 68  CAGADLK----ERA-GMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSL 122

Query: 186 HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGK 235
              +RI  E   L + E  + + P  G          GG+      +G         TG+
Sbjct: 123 ACDFRIAAESASLGLTETTLAIIP--GA---------GGTQRLPRLIGVGRAKELIYTGR 171

Query: 236 RISTPSDALFAGLGTDYVPSGNLGSLKEAL 265
           RIS   +A   GL    VP   L   ++A+
Sbjct: 172 RISA-QEAKEYGLVEFVVPVHLL--EEKAI 198

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score = 99.2 bits (248), Expect = 6e-24
 Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 28/185 (15%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             + +ITL+RP +LN++N D+ +           DP  +  +I G+G RAF AG D    
Sbjct: 36  GALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAG-RAFSAGGDFG-- 92

Query: 135 VAEIQKDRNTPLVPKVFTAEYS-LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
              +++      +      +   ++  ++  + P ++ ++G  +G G  +        + 
Sbjct: 93  --YLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIA 150

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VG----AYLGMTGKRISTPSDA 243
           E   LA P   +GL               GG       +         +TG RIS    A
Sbjct: 151 ENAYLADPHVQVGLVAA-----------DGGPLTWPLHISLLLAKEYALTGTRISAQ-RA 198

Query: 244 LFAGL 248
           +  GL
Sbjct: 199 VELGL 203

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score = 98.9 bits (247), Expect = 8e-24
 Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 16/184 (8%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             V  IT  RP+A N +N  +  +    L++ E+   V  V++EG     FC G D + +
Sbjct: 15  ASVCYITFHRPEANNTINDTLIEECLQVLNQCETST-VTVVVLEGLP-EVFCFGADFQEI 72

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E+++ R      +       L  K+       IS + G     G+G        I  +
Sbjct: 73  YQEMKRGRKQASSQEPLYD---LWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQ 129

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGA----YLGMTGKRISTPSDALFAGLGT 250
               ++ E   GL+P     ++  +      +G     Y+ +  K IS   +A   GL  
Sbjct: 130 TASFSLSELLFGLYPACVLPFLIRR------IGRQKAHYMTLMTKPIS-VQEASEWGLID 182

Query: 251 DYVP 254
            +  
Sbjct: 183 AFDA 186

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score = 97.6 bits (244), Expect = 1e-23
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 39/201 (19%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V  +TL+RP++ NA++ ++   +   L + ++D  V  V++ G+    FCAG+D+K  
Sbjct: 17  DRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGAD-PVFCAGLDLK-- 73

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E+             T    +  K  +  KP I  ++G  +  G+ ++ +    I +E
Sbjct: 74  --ELGD----------TTELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASE 121

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
               A     +GL P             G S      VG  L      TG  +S   DAL
Sbjct: 122 NAKFADTHARVGLMPT-----------WGLSVRLPQKVGVGLARRMSLTGDYLS-AQDAL 169

Query: 245 FAGLGTDYVPSGNLGSLKEAL 265
            AGL T+ V   +L  L  A 
Sbjct: 170 RAGLVTEVVAHDDL--LTAAR 188

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score = 98.0 bits (245), Expect = 2e-23
 Identities = 48/201 (23%), Positives = 76/201 (37%), Gaps = 29/201 (14%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             V VI L+RP   NA +  M  +    L E+E+D  ++  ++ G G   F AG+D+  V
Sbjct: 17  GYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEG-PLFTAGLDLASV 75

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
            AEIQ      L P+     + +     +  KP +  + G  +  GI ++      I  E
Sbjct: 76  AAEIQGG--ASLTPEGGINPWQV--DGRQLSKPLLVAVHGKVLTLGIELALAADIVIADE 131

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
               A  E   G++P            GG +       G    M    T        +A 
Sbjct: 132 TATFAQLEVNRGIYPF-----------GGATIRFPRTAGWGNAMRWMLTADTFDAV-EAH 179

Query: 245 FAGLGTDYVPSGNLGSLKEAL 265
             G+  + VP G    +  A+
Sbjct: 180 RIGIVQEIVPVGEH--VDTAI 198

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score = 97.6 bits (244), Expect = 2e-23
 Identities = 36/209 (17%), Positives = 72/209 (34%), Gaps = 18/209 (8%)

Query: 72  VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDI 131
                  ++   +    N++N ++  + +S L    +D   K VL+   G   FC G+D 
Sbjct: 11  KQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVG-SVFCCGLDF 68

Query: 132 KGVVAEIQKDRNTPLVPKVFTAEY-SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYR 190
              +  +  D               + +    ++KKP I  ++G  +G G  I       
Sbjct: 69  IYFIRRLTDD--RKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVV 126

Query: 191 IVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----AYLGMTGKRISTPSDALFA 246
              EK     P    G  PD   + +  K      +G      + ++G++++   +A   
Sbjct: 127 WANEKAWFQTPYTTFGQSPDGCSTVMFPK-----IMGGASANEMLLSGRKLTAQ-EACGK 180

Query: 247 GLGTDYVPSGNLGSLKEAL-LAVTFSEDP 274
           GL +     G     +E +      +   
Sbjct: 181 GLVSQVFWPGTF--TQEVMVRIKELASCN 207

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score = 98.1 bits (245), Expect = 2e-23
 Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 20/235 (8%)

Query: 48  QTSGNSRTFATMAAAGAEEF--VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDE 105
            +  +    + +   G+  +  +          ++   R    NA+N ++  +  + L+ 
Sbjct: 3   SSHHHHHHSSGLVPRGSSTYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNS 62

Query: 106 WESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY-SLICKISEY 164
             +D   K VL   +G   FC G+D    V  ++ +RNT            + +    ++
Sbjct: 63  AAADD-SKLVLFSAAG-SVFCCGLDFGYFVKHLRNNRNTA--SLEMVDTIKNFVNTFIQF 118

Query: 165 KKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224
           KKP +  ++G  +G G  I          EK     P    G  PD   S    K     
Sbjct: 119 KKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPK----- 173

Query: 225 SVGAY----LGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 274
            +G      + + G++++   +A   GL +    +G     +E +      +   
Sbjct: 174 MMGKASANEMLIAGRKLTA-REACAKGLVSQVFLTGTF--TQEVMIQIKELASYN 225

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score = 97.6 bits (244), Expect = 3e-23
 Identities = 40/203 (19%), Positives = 84/203 (41%), Gaps = 29/203 (14%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            G+ V+ ++R    N+++ ++       +D  +SD +V+ ++I    P  FCAG D+K  
Sbjct: 20  RGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLK-- 77

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E     ++  V    +   ++I  I+    P I+ +DG+ +G G+ ++     R+   
Sbjct: 78  --ERA-KMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAAS 134

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
              + + E  + + P  G          GG+      +G  L      + + +    +A 
Sbjct: 135 SAKMGLVETKLAIIP--GG---------GGTQRLPRAIGMSLAKELIFSARVLDG-KEAK 182

Query: 245 FAGLGTDYVPSGNLGS--LKEAL 265
             GL +  +     G    ++AL
Sbjct: 183 AVGLISHVLEQNQEGDAAYRKAL 205

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score = 97.7 bits (244), Expect = 3e-23
 Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 28/200 (14%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+  I L  PK  N ++L M    +S +        +K ++I   GP  F +G D+K  
Sbjct: 41  DGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGP-VFSSGHDLK-- 97

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E+ +++      +VF     ++  I  +  P I++++G+    G  +       + ++
Sbjct: 98  --ELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASD 155

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS-----VGAYLGM----TGKRISTPSDALF 245
           K+  A P   +GLF               G      V   + +    TG+ IS   +AL 
Sbjct: 156 KSSFATPGVNVGLFC--ST---------PGVALARAVPRKVALEMLFTGEPISA-QEALL 203

Query: 246 AGLGTDYVPSGNLGSLKEAL 265
            GL +  VP   L   +E +
Sbjct: 204 HGLLSKVVPEAEL--QEETM 221

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score = 96.4 bits (241), Expect = 4e-23
 Identities = 46/201 (22%), Positives = 79/201 (39%), Gaps = 28/201 (13%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             VAV+ L+ P+  N ++ +M +     LD+ E+DP V+ V++ G G +AF AG D+  +
Sbjct: 7   GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGADLAFL 65

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
               +          +      L  ++  Y KP ++ ++G  +  G G++      ++ E
Sbjct: 66  ERVTELGAEENYRHSLSLMR--LFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDE 123

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
           +  L   E  IG                  S      VG         TG+ +    +A 
Sbjct: 124 EARLGYTEVKIGFV------------AALVSVILVRAVGEKAAKDLLLTGRLVEA-REAK 170

Query: 245 FAGLGTDYVPSGNLGSLKEAL 265
             GL     P G    L+EA 
Sbjct: 171 ALGLVNRIAPPGKA--LEEAK 189

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score = 96.5 bits (241), Expect = 5e-23
 Identities = 34/209 (16%), Positives = 72/209 (34%), Gaps = 27/209 (12%)

Query: 66  EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF 125
           E +  +   NG+  + +    +          ++     +   D   + V++ GSG  A+
Sbjct: 23  ENLHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSG-DAW 81

Query: 126 CAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG 185
            A +D       +    N     K +     ++  + + + P IS ++G  +        
Sbjct: 82  MAEIDFP----SLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-------L 130

Query: 186 HGRY------RIVTEKTLLA-MPENGIGLFPDVGFSYIAAK--GPGGGSVGAYLGMTGKR 236
           H  Y       + +E T+   MP    G+ P  G   +     G      G Y   T ++
Sbjct: 131 HSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLY---RGRYFLFTQEK 187

Query: 237 ISTPSDALFAGLGTDYVPSGNLGSLKEAL 265
           ++    A    +  + +P   L  ++ A 
Sbjct: 188 LT-AQQAYELNVVHEVLPQSKL--MERAW 213

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score = 95.7 bits (239), Expect = 1e-22
 Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 28/204 (13%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
              A ITL+RP ALNA++  M  + ++   E E+D RV  +++ G+G RAFC+G D+K +
Sbjct: 19  GHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTG-RAFCSGADVKEI 77

Query: 135 VAEIQKDRNTPLVPKVFTAEYS--LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             + +     P +      E             KP ++ ++G+  G G+         I 
Sbjct: 78  PEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIA 137

Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSD 242
           +E+     P   IGL              G         +   + +     GK     + 
Sbjct: 138 SEQATFFDPHVSIGLV------------AGRELVRVSRVLPRSIALRMALMGKHERMSAQ 185

Query: 243 -ALFAGLGTDYVPSGNLGSLKEAL 265
            A   GL ++ V    L  L+ A 
Sbjct: 186 RAYELGLISEIVEHDRL--LERAH 207

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score = 95.4 bits (238), Expect = 2e-22
 Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 25/201 (12%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E+              A       +  Y KP I++++G   G G          I  +
Sbjct: 76  FREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICAD 135

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
           +    + E   G+ P               S      VG    +    TGK       A 
Sbjct: 136 EATFGLSEINWGIPPG-----------NLVSKAMADTVGHRQSLMYIMTGKTFGG-QKAA 183

Query: 245 FAGLGTDYVPSGNLGSLKEAL 265
             GL  + VP   L   +  +
Sbjct: 184 EMGLVNESVPLAQL--REVTI 202

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score = 94.9 bits (237), Expect = 2e-22
 Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 14/188 (7%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V ++T++R    NA +  +  + +  LD   +D  V+ ++++ +G + F AG D+  +
Sbjct: 12  DKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANG-KHFSAGADLTWM 70

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
            +         L   +      L+  IS+  KP I+++ G   G G G++      I + 
Sbjct: 71  QSMANFTEEENLEDSLVLGN--LMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIAST 128

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY----LGMTGKRISTPSDALFAGLGT 250
                  E  +GL P V   Y+         +G      L M+ +     + A    L  
Sbjct: 129 SARFCFSEVKLGLIPAVISPYVVRA------IGERAAKMLFMSAEVFDA-TRAYSLNLVQ 181

Query: 251 DYVPSGNL 258
             VP   L
Sbjct: 182 HCVPDDTL 189

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score = 94.9 bits (237), Expect = 2e-22
 Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 4/174 (2%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             VA +TL+ P   NA++  +  +    L +  SDP V+ V++  +G   FCAG D+   
Sbjct: 19  GPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTG-GTFCAGADLSEA 77

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
            +         +  +      +L+  I E + P I+ +DG     G G+ G     +   
Sbjct: 78  GSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGP 137

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL 248
           ++  A+ E  IG+ P +    +  K        A   +TG++      A   GL
Sbjct: 138 RSSFALTEARIGVAPAIISLTLLPK--LSARAAARYYLTGEKFDAR-RAEEIGL 188

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score = 94.2 bits (235), Expect = 2e-22
 Identities = 42/242 (17%), Positives = 73/242 (30%), Gaps = 25/242 (10%)

Query: 57  ATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVL 116
            +M+       V      + + VI +D  K +N +   M       +D  + D  V  ++
Sbjct: 1   GSMS-----GPVTYTHD-DAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRDN-VGALV 52

Query: 117 IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVT 176
           I G+  R F  G D+K     +           +    + L  ++  Y KP +    G  
Sbjct: 53  IAGNH-RVFSGGFDLK----VLT-SGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHA 106

Query: 177 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK--GPGGGSVGAYLGMTG 234
           +  G  +   G +R+      +   E  IG+        +      P   S         
Sbjct: 107 IAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTP---SAYQQAAGLA 163

Query: 235 KRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYSSDPEGEA 293
           K       AL AG   +      +  L  A   A  F+            K  +  E   
Sbjct: 164 KTFF-GETALAAGFIDEISLPEVV--LSRAEEAAREFAGLNQ--QAHNATKLRARAEALK 218

Query: 294 PL 295
            +
Sbjct: 219 AI 220

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score = 96.0 bits (239), Expect = 3e-22
 Identities = 44/231 (19%), Positives = 75/231 (32%), Gaps = 44/231 (19%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + VA IT +RP+  NA+  D  ++  + ++  + DP V  +L+ G G   FCAG D+   
Sbjct: 43  DRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRG-EGFCAGFDLSAY 101

Query: 135 ------------------------VAEIQKDRNTPLVPKVFTAEYS-LICKISEYKKPYI 169
                                   +  +  +   P+V     + +      +    KP +
Sbjct: 102 AEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTV 161

Query: 170 SLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF-----SYIAAKGPGGG 224
             + G  +  G  I+ H    I      +  P   +   P  G          AK     
Sbjct: 162 VKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAGLWAHRLGDQRAKR---- 217

Query: 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 274
                L  TG  I+  + A   GL  +     +L        L    +  P
Sbjct: 218 -----LLFTGDCIT-GAQAAEWGLAVEAPDPADL--DARTERLVERIAAMP 260

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score = 94.1 bits (235), Expect = 3e-22
 Identities = 44/234 (18%), Positives = 84/234 (35%), Gaps = 35/234 (14%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GVAV+    P  +N+++L+   +    L++ E+D   + V++    P  F AG+D+   
Sbjct: 13  AGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLT-- 69

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E+   R+       + A   L  ++ +     +S ++G     G  ++    YRI+ +
Sbjct: 70  --EMC-GRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILAD 126

Query: 195 --KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSD 242
             +  + + E  +G+             P          +G          G     P++
Sbjct: 127 NPRYCIGLNETQLGIIA-----------PFWLKDTLENTIGHRAAERALQLGLLFP-PAE 174

Query: 243 ALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYSSDPEGEAPL 295
           AL  G+    VP   +     AL     +   P  D    L K        + L
Sbjct: 175 ALQVGIVDQVVPEEQV--QSTALSAIAQWMAIP--DHARQLTKAMMRKATASRL 224

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score = 94.5 bits (236), Expect = 3e-22
 Identities = 44/199 (22%), Positives = 80/199 (40%), Gaps = 14/199 (7%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK-- 132
             V  + L+RP+  NAMN     +      +   D   + V++ G+G + F +G+D+   
Sbjct: 12  KHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDM 70

Query: 133 --GVVAEIQKD--RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR 188
              ++     D  R    +  + +        I +  KP I+ + G  +G G+ +     
Sbjct: 71  ASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACD 130

Query: 189 YRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL 248
            R  T+     + E  +GL  DVG      K  G  S+   L  T +++    +AL +GL
Sbjct: 131 IRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMM-ADEALDSGL 189

Query: 249 GTDYVPSGNLGSLKEALLA 267
            +   P       K+ +L 
Sbjct: 190 VSRVFPD------KDVMLN 202

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score = 93.8 bits (234), Expect = 5e-22
 Identities = 42/202 (20%), Positives = 66/202 (32%), Gaps = 31/202 (15%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             + +I LDR    NA +  M       + E+E     +C ++   G   F AG+D+  +
Sbjct: 20  GHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHG-EHFTAGLDLMEL 78

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             ++         P      + ++       KP +  + G     GI +  +    +   
Sbjct: 79  APKLAASGFRY--PDGGVDPWGVV--QPRRSKPLVVAVQGTCWTAGIELMLNADIAVAAR 134

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS-------VGAYLGM----TGKRISTPSDA 243
            T  A  E   G+             P GGS        G    M    TG       +A
Sbjct: 135 GTRFAHLEVLRGIP------------PLGGSTVRFPRAAGWTDAMRYILTGDEFDAD-EA 181

Query: 244 LFAGLGTDYVPSGNLGSLKEAL 265
           L   L T+ V  G    L  AL
Sbjct: 182 LRMRLLTEVVEPGEE--LARAL 201

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score = 93.3 bits (233), Expect = 7e-22
 Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 35/223 (15%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             V +I L RP  LNA++  M  +  + ++ ++ + +V+ +++ G G RAF AG DI+  
Sbjct: 13  GAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRG-RAFAAGADIQ-- 69

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E+ KD    L      A++    ++S  K P I+ ++G+ +G G  ++      + + 
Sbjct: 70  --EMAKDDPIRLEWLNQFADWD---RLSIVKTPMIAAVNGLALGGGFELALSCDLIVASS 124

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
                 PE  +G+ P  G          GG+      +G    +    TG R+S   +A 
Sbjct: 125 AAEFGFPEVNLGVMP--GA---------GGTQRLTKLIGPKRALEWLWTGARMSA-KEAE 172

Query: 245 FAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYS 286
             G+    V    L  ++E + LA   +E P   +   L K +
Sbjct: 173 QLGIVNRVVSPELL--MEETMRLAGRLAEQPP--LALRLIKEA 211

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score = 93.0 bits (232), Expect = 8e-22
 Identities = 40/210 (19%), Positives = 72/210 (34%), Gaps = 39/210 (18%)

Query: 52  NSRTFATMAAA--GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESD 109
           +     T+ A   G    +        V  I L RP+  NA+N  +  +    + +   D
Sbjct: 5   HHHHMGTLEAQTQGPGSMIGITQA-EAVLTIELQRPERRNALNSQLVEELTQAIRK-AGD 62

Query: 110 PRVKCVLIEGSGPRAFCAGMDIKG-VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY 168
              + +++ G G  AFCAG D+ G   A    DR              L   +     P 
Sbjct: 63  GSARAIVLTGQG-TAFCAGADLSGDAFAADYPDRLIE-----------LHKAMDASPMPV 110

Query: 169 ISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS--- 225
           +  ++G  +G G+ ++     R+V        P +  GL  D                  
Sbjct: 111 VGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALD-----------NWSIRRL 159

Query: 226 ---VGAY----LGMTGKRISTPSDALFAGL 248
              VG      + ++ ++++    AL  G+
Sbjct: 160 SSLVGHGRARAMLLSAEKLTA-EIALHTGM 188

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score = 93.0 bits (232), Expect = 9e-22
 Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 29/201 (14%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             V ++T++RP   NA++ +M  ++ +  DE + D  ++  ++ G+G  A+C G D+   
Sbjct: 17  GPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAG-SAYCVGGDLS-- 73

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             +    R+    P         +       KP I+ ++G  +G G  +      R+  E
Sbjct: 74  --DGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDE 131

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
                +PE   GL P  G          G        +     M    TG+ ++   +A 
Sbjct: 132 HATFGLPEVQRGLVP--GA---------GSMVRLKRQIPYTKAMEMILTGEPLTAF-EAY 179

Query: 245 FAGLGTDYVPSGNLGSLKEAL 265
             GL    VP+G    L +A 
Sbjct: 180 HFGLVGHVVPAGTA--LDKAR 198

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score = 92.3 bits (230), Expect = 1e-21
 Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 17/204 (8%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GV ++T+               +      +   D   K V++ G+G  +FC  +D    
Sbjct: 24  GGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTG-PSFCNEIDFTSF 82

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
                         ++      L+  +   + P I+ ++G        I       +  E
Sbjct: 83  -----NLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAE 136

Query: 195 KTLLA-MPENGIGLFPDVGFSYIAAK--GPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 251
                  P    G+ P  G   +     G      G Y  +TG+ +     AL  G   +
Sbjct: 137 SATFQDGPHFPSGIVPGDGAHVVWPHVLGSN---RGRYFLLTGQELD-ARTALDYGAVNE 192

Query: 252 YVPSGNLGSLKEAL-LAVTFSEDP 274
            +    L  L  A  LA   +E P
Sbjct: 193 VLSEQEL--LPRAWELARGIAEKP 214

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score = 92.6 bits (231), Expect = 2e-21
 Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 30/201 (14%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             V VIT++RP+A NA+N  + I     L+E + DP V+ V++ G+G ++FCAG D+K  
Sbjct: 17  GNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLK-- 74

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
              I   R   L                   KP I+ ++G  +G G  ++      +  E
Sbjct: 75  --AIA--RRENLYHPDHPEWGFAGYVRHFIDKPTIAAVNGTALGGGTELALASDLVVADE 130

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
           +    +PE   GL               GG       +   + M    TG+ +S    A 
Sbjct: 131 RAQFGLPEVKRGLIAA-----------AGGVFRIAEQLPRKVAMRLLLTGEPLSAA-AAR 178

Query: 245 FAGLGTDYVPSGNLGSLKEAL 265
             GL  + V +G++  L  AL
Sbjct: 179 DWGLINEVVEAGSV--LDAAL 197

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score = 92.6 bits (231), Expect = 2e-21
 Identities = 51/225 (22%), Positives = 86/225 (38%), Gaps = 32/225 (14%)

Query: 53  SRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRV 112
             T  T A   +              ++T++RP   NA++ +M        D  ++DP +
Sbjct: 7   PNTSETPANGESGPDALVEQR-GHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDI 65

Query: 113 KCVLIEGSGPRAFCAGMDIKGVVAE--IQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS 170
           +C ++ G+G   FCAGMD+K    +      ++    P    A    + K    KKP I+
Sbjct: 66  RCCILTGAG-GYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDA----LLKGRRLKKPLIA 120

Query: 171 LMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS----- 225
            ++G  +  G  I      R+  E     + E    L+P            GG +     
Sbjct: 121 AVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPM-----------GGSAVRLVR 169

Query: 226 -VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 265
            +   +      TG+ I+  ++A   GL    VP G    L +AL
Sbjct: 170 QIPYTVACDLLLTGRHITA-AEAKEMGLVGHVVPDGQA--LTKAL 211

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score = 91.4 bits (228), Expect = 3e-21
 Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 37/224 (16%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V +I L+RPKALNA+   +  +    L+ +E DP V  +++ G   +AF AG DIK  
Sbjct: 15  SSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGE-KAFAAGADIK-- 71

Query: 135 VAEIQKDRNTPLVPKVFTAEY-SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             E+Q +R        ++ ++ S    I+  KKP I+ ++G  +G G  ++         
Sbjct: 72  --EMQ-NRT---FQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAG 125

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDA 243
           EK     PE  +G  P  G          GG+      VG  L M    TG RIS   DA
Sbjct: 126 EKAQFGQPEILLGTIP--GA---------GGTQRLTRAVGKSLAMEMVLTGDRISA-QDA 173

Query: 244 LFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYS 286
             AGL +   P   L  ++EA+  A   + +    I+  +AK S
Sbjct: 174 KQAGLVSKIFPVETL--VEEAIQCAEKIANNSK--IIVAMAKES 213

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score = 91.5 bits (228), Expect = 4e-21
 Identities = 68/255 (26%), Positives = 112/255 (43%), Gaps = 42/255 (16%)

Query: 53  SRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRV 112
           ++   +M      E +        V +ITL+RP+ALNA+N  +  +  S   E + DP +
Sbjct: 16  TQGPGSMT----YETILVERD-QRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDI 70

Query: 113 KCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY-SLICKISEYKKPYISL 171
             ++I GS  +AF AG DIK    E+  D         FTA++ +   K++  + P I+ 
Sbjct: 71  GAIIITGSA-KAFAAGADIK----EMA-DLT---FADAFTADFFATWGKLAAVRTPTIAA 121

Query: 172 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------ 225
           + G  +G G  ++      I  +      PE  +G+ P  G          GGS      
Sbjct: 122 VAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLP--GM---------GGSQRLTRA 170

Query: 226 VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVA 280
           +G    M    TG+ +   ++A  +GL +  VP+ +L  L EA   A T S+       A
Sbjct: 171 IGKAKAMDLILTGRTMDA-AEAERSGLVSRVVPADDL--LTEARATATTISQMSA--SAA 225

Query: 281 LLAKYSSDPEGEAPL 295
            +AK + +   E+ L
Sbjct: 226 RMAKEAVNRAFESSL 240

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score = 90.7 bits (226), Expect = 4e-21
 Identities = 32/191 (16%), Positives = 61/191 (31%), Gaps = 26/191 (13%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
                 TL RP+  NA++ ++       +D      +V  ++  G+G R F AG D    
Sbjct: 15  PAAWTFTLSRPEKRNALSAELVEALIDGVDAAH-REQVPLLVFAGAG-RNFSAGFDFTDY 72

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
                + ++   +         L+ +++      ++L  G   G G+ +    ++R  T 
Sbjct: 73  -----ETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTP 127

Query: 195 KTLLAMPENGIGLFPD-------VGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 247
           +    MP    GL          VG     A           +  + +      +A   G
Sbjct: 128 EAGFRMPGLKFGLVLGTRRFRDIVGAD--QAL---------SILGSARAFDAD-EARRIG 175

Query: 248 LGTDYVPSGNL 258
              D       
Sbjct: 176 FVRDCAAQAQW 186

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score = 91.1 bits (227), Expect = 4e-21
 Identities = 47/219 (21%), Positives = 79/219 (36%), Gaps = 34/219 (15%)

Query: 57  ATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVL 116
            +M+    +  V+       V  + L+RP A NA++        +   E+++DP     +
Sbjct: 3   GSMSEE-MQPAVRVEKA-GPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAV 60

Query: 117 IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVT 176
           + G     FCAG D+K     +  DR   L P        +        KP I+ + G  
Sbjct: 61  LWGDN-GTFCAGADLK----AMGTDRGNELHPHGP---GPMGPSRLRLSKPVIAAISGHA 112

Query: 177 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYL 230
           +  GI ++     R+V E  +L +     G+               GG+      +G   
Sbjct: 113 VAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLI-----------DGGTIRLPRLIGHSR 161

Query: 231 GM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 265
            M    TG+ +    +AL  GL    V  G     + A 
Sbjct: 162 AMDLILTGRPVHAN-EALDIGLVNRVVARGQA--REAAE 197

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score = 91.0 bits (227), Expect = 5e-21
 Identities = 45/219 (20%), Positives = 92/219 (42%), Gaps = 33/219 (15%)

Query: 59  MAAAGAE-EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI 117
           M A   + +++      +G+A I L   K+ N+ +L+   ++ + +D+   DP +K V++
Sbjct: 1   MTAVETKKQYLTVFKE-DGIAEIHLHINKS-NSYDLEFYKEFNAAIDDIRFDPDIKVVIV 58

Query: 118 EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTM 177
               P+ F AG DI      ++   +     +        + KI+   + YI+ ++G T+
Sbjct: 59  MSDVPKFFSAGADIN----FLR-SADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTV 113

Query: 178 GFGIGISGHGRYRIVTEKTL-LAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYL 230
           G G+ ++     R + ++   + +PE  +G+    G          GG+      +G   
Sbjct: 114 GGGLEMALACDLRFMGDEAGKIGLPEVSLGVLA--GT---------GGTQRLARLIGYSR 162

Query: 231 GM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 265
            +    TG+ I+ P +AL  GL     P       +   
Sbjct: 163 ALDMNITGETIT-PQEALEIGLVNRVFPQAET--RERTR 198

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score = 91.1 bits (227), Expect = 5e-21
 Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 35/248 (14%)

Query: 59  MAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE 118
             +      +  +    GV +I LDRP ALNA+N  ++ +      ++++D  +  +++ 
Sbjct: 2   PGSMTTYTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVT 61

Query: 119 GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMG 178
           GS  RAF AG DI     E+          +   + +     +++ +KP ++ + G  +G
Sbjct: 62  GSE-RAFAAGADIA----EMVTLTPHQARERNLLSGWD---SLTQVRKPIVAAVAGYALG 113

Query: 179 FGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM 232
            G  ++      I  +      PE  +G+ P  G          GG+      VG    M
Sbjct: 114 GGCELAMLCDLVIAADTARFGQPEITLGILP--GL---------GGTQRLTRAVGKAKAM 162

Query: 233 ----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYSS 287
               TG+ ++   +A   GL +  VP+ +L  L EAL +A   +            K + 
Sbjct: 163 DLCLTGRSLTA-EEAERVGLVSRIVPAADL--LDEALAVAQRIARMSR--PAGRAVKDAI 217

Query: 288 DPEGEAPL 295
           +   E PL
Sbjct: 218 NEAFERPL 225

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score = 91.0 bits (226), Expect = 1e-20
 Identities = 39/208 (18%), Positives = 61/208 (29%), Gaps = 25/208 (12%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP------RAFCAG 128
           +    +  +RP+  NA       +    LD     P V  VL+ G+GP       AFC+G
Sbjct: 65  DATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSG 124

Query: 129 MDIK-----GVVAEIQKDRNTPLVPKVFTAEYS-LICKISEYKKPYISLMDGVTMGFGIG 182
            D +     G         +T  V +        +   I    K  I L++G   G G  
Sbjct: 125 GDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHS 184

Query: 183 ISGHGRYRIV-TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGA----YLGMTGKRI 237
           +       +   E       +  +G F     S   A+      VG      +   G+  
Sbjct: 185 LHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLAR-----QVGQKFAREIFFLGRTY 239

Query: 238 STPSDALFAGLGTDYVPSGNLGSLKEAL 265
           +        G          L      L
Sbjct: 240 T-AEQMHQMGAVNAVAEHAEL--ETVGL 264

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score = 89.5 bits (223), Expect = 2e-20
 Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 35/201 (17%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + + +IT++RPKA N++N  +       +D  ++D  +   ++ G+G  +FCAGMD+K  
Sbjct: 23  DRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAG-GSFCAGMDLKA- 80

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
                      +V                  KP I+ ++G  +  G  ++      +   
Sbjct: 81  ----FARGENVVVEGRGLGF-----TERPPAKPLIAAVEGYALAGGTELALATDLIVAAR 131

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
            +   +PE   GL              GGG       +   + M    TG  +S    A 
Sbjct: 132 DSAFGIPEVKRGLVAG-----------GGGLLRLPERIPYAIAMELALTGDNLSA-ERAH 179

Query: 245 FAGLGTDYVPSGNLGSLKEAL 265
             G+       G    L  A+
Sbjct: 180 ALGMVNVLAEPGAA--LDAAI 198

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score = 89.2 bits (222), Expect = 3e-20
 Identities = 52/255 (20%), Positives = 86/255 (33%), Gaps = 35/255 (13%)

Query: 52  NSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPR 111
            +    T       EFV       G+A + + RP   NAM   +  +  +  DE      
Sbjct: 10  GTLEAQTQGPGSMNEFVSVVAD-QGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDD 67

Query: 112 VKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISL 171
           +  V++ G     F AG D+     E++   N P            I  ++   KP ++ 
Sbjct: 68  IGAVVLFGGH-EIFSAGDDMP----ELR-TLNAPEADTAARVRLEAIDAVAAIPKPTVAA 121

Query: 172 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------ 225
           + G  +G G+ ++    +R+  +       E   GL P  G          GG       
Sbjct: 122 VTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIP--GG---------GGMGRLTRV 170

Query: 226 VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVA 280
           VG+        +G+      +AL  GL  D V   ++     A+  A  + E P      
Sbjct: 171 VGSSRAKELVFSGRFFDA-EEALALGLIDDMVAPDDV--YDSAVAWARRYLECPP--RAL 225

Query: 281 LLAKYSSDPEGEAPL 295
             AK   +   E   
Sbjct: 226 AAAKAVINDVFELEA 240

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score = 87.9 bits (219), Expect = 4e-20
 Identities = 43/201 (21%), Positives = 69/201 (34%), Gaps = 36/201 (17%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V +IT++RP A NA+N  +     +  D+ +S   +   +I G+G   FCAGMD+K  
Sbjct: 15  DRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAG-GNFCAGMDLK-- 71

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
                          +              +KP I+ ++G  +  G  +       +   
Sbjct: 72  --AFVSGEAVLSERGLGFTNVPP-------RKPIIAAVEGFALAGGTELVLSCDLVVAGR 122

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
                +PE   GL               GG       +   + M    TG+  +   DA 
Sbjct: 123 SAKFGIPEVKRGLVAG-----------AGGLLRLPNRIPYQVAMELALTGESFTA-EDAA 170

Query: 245 FAGLGTDYVPSGNLGSLKEAL 265
             G     V  G    L  AL
Sbjct: 171 KYGFINRLVDDGQA--LDTAL 189

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score = 88.8 bits (221), Expect = 4e-20
 Identities = 43/245 (17%), Positives = 73/245 (29%), Gaps = 42/245 (17%)

Query: 59  MAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE 118
           M+   + E +K  +    V   T + P  +N +  ++     + L+E       + V+ +
Sbjct: 1   MSLTASYETIKARLD-GTVLSATFNAP-PMNLIGPEVVRDLVALLEELAHPTAPRVVIFD 58

Query: 119 GSGPRAFCAGMDIK-----GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD 173
            +    F   +D+         A          +  +F        K+S+     I+ + 
Sbjct: 59  SADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFR-------KLSQLPAVTIAKLR 111

Query: 174 GVTMGFGIGISGHGRYRIV-TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------V 226
           G   G G         R    E  +L  PE GIG  P  G          G        +
Sbjct: 112 GRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPP--GA---------GAIQHLTRLL 160

Query: 227 GAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVAL 281
           G    +    T         A   G     VP   L   +    +A   S  P      +
Sbjct: 161 GRGRALEAVLTSSDFD-ADLAERYGWVNRAVPDAEL--DEFVAGIAARMSGFPR--DALI 215

Query: 282 LAKYS 286
            AK +
Sbjct: 216 AAKSA 220

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score = 88.0 bits (219), Expect = 6e-20
 Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 32/201 (15%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             V  I L+RPK  NA+N  +    K  L   +   +++ V+I G G   F AG+D+   
Sbjct: 24  GPVLTIGLNRPKKRNALNDGLMAALKDCLT--DIPDQIRAVVIHGIG-DHFSAGLDLS-- 78

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E++ +R+           + +  KI   + P I+ + G  +G G+ ++     R+   
Sbjct: 79  --ELR-ERDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEA 135

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
               A+PE   G+F   G          GGS      +G         TG+  S   + +
Sbjct: 136 SAYYALPEGSRGIFV--GG---------GGSVRLPRLIGVARMADMMLTGRVYSAA-EGV 183

Query: 245 FAGLGTDYVPSGNLGSLKEAL 265
             G     + +G+     +AL
Sbjct: 184 VHGFSQYLIENGSA--YDKAL 202

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score = 88.0 bits (219), Expect = 8e-20
 Identities = 44/224 (19%), Positives = 70/224 (31%), Gaps = 29/224 (12%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA I LD P  +N +   M  + ++ L     D  V+ ++   + P  F A +D++  
Sbjct: 17  HGVARIILDNP-PVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIG 75

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV-T 193
                        P       ++   I    +  I  + G   G G              
Sbjct: 76  EKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAA 135

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDA 243
           E   L   E  +G+ P  G          GG+      VG    +    T         A
Sbjct: 136 ETAGLGQIEALMGIIP--GG---------GGTQYLRGRVGRNRALEVVLTADLFDA-ETA 183

Query: 244 LFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYS 286
              G     +P+  L   +    +A   +  P  D V   AK S
Sbjct: 184 ASYGWINRALPADEL--DEYVDRVARNIAALP--DGVIEAAKRS 223

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score = 86.5 bits (215), Expect = 1e-19
 Identities = 43/227 (18%), Positives = 74/227 (32%), Gaps = 26/227 (11%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA +TL+  K +NA++ D+ I + + LD+ E D  +   +I    P     G D+K  
Sbjct: 14  DGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKDRAI---VIVTGQPGILSGGYDLK-- 67

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRI-VT 193
              +    +      +     +L  ++  +  P I    G  +  G  +     YRI V 
Sbjct: 68  --VMTS--SAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVA 123

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM----TGKRISTPSDALFAGLG 249
               + + E  IG+        +A        +            +    P  A+ AG  
Sbjct: 124 GPFSIGLNEVQIGMTMHHAGIELARD-----RLRKSAFNRSVINAEMFD-PEGAMAAGFL 177

Query: 250 TDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYSSDPEGEAPL 295
              V    L     AL +A    +           K          L
Sbjct: 178 DKVVSVEEL--QGAALAVAAQLKKINM--NAHKKTKLKVRKGLLDTL 220

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score = 89.1 bits (221), Expect = 1e-19
 Identities = 39/220 (17%), Positives = 74/220 (33%), Gaps = 44/220 (20%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS--------GPRAFC 126
           +GVA +T+ R   LNA +       ++ +D    DP V+  L+ G         G R F 
Sbjct: 175 DGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFS 234

Query: 127 AGMDIKGV------VAEIQKDRNTPLVPKVFTAEYSLIC-----KISEYKKPYISLMDGV 175
           AG+++K +      + +    R    + K+     +             +KP+++ +DG 
Sbjct: 235 AGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGF 294

Query: 176 TMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAY 229
            +G G  +       + +     ++P    G+             PG  +       G  
Sbjct: 295 AIGGGAQLLLVFDRVLASSDAYFSLPAAKEGII------------PGAANLRLGRFAGPR 342

Query: 230 LGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 265
           +       G+RI    +     L  + V    L       
Sbjct: 343 VSRQVILEGRRIWA-KEPEARLLVDEVVEPDEL--DAAIE 379

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score = 86.8 bits (216), Expect = 1e-19
 Identities = 53/224 (23%), Positives = 80/224 (35%), Gaps = 35/224 (15%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + +AV TL+   A NAM+  +       +D+ E D  ++ V+I G G R F AG DIK  
Sbjct: 14  DHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEG-RFFSAGADIK-- 69

Query: 135 VAEIQKDRNTPLVPKVFTAEY-SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             E                       ++ +  KP I+ + G  +G G+  +     R  T
Sbjct: 70  --EFT-SVTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFAT 126

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDA 243
           E   L +PE  +GL P  GF          G+      VG         T   I+  ++A
Sbjct: 127 ESAKLGLPELTLGLIP--GF---------AGTQRLPRYVGKAKACEMMLTSTPITG-AEA 174

Query: 244 LFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYS 286
           L  GL            L + L +A   +        A      
Sbjct: 175 LKWGLVNGVFAEETF--LDDTLKVAKQIAGKSP--ATARAVLEL 214

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 88.9 bits (221), Expect = 4e-19
 Identities = 49/229 (21%), Positives = 88/229 (38%), Gaps = 40/229 (17%)

Query: 52  NSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPR 111
           +    + +   G+       +  + +A+I L  P   NA++  +  + ++ L +  SD  
Sbjct: 7   HHHHSSGLVPRGSHMAEYLRLP-HSLAMIRLCNPPV-NAVSPTVIREVRNGLQKAGSDHT 64

Query: 112 VKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISL 171
           VK ++I       FCAG DI               +  +         +I  Y+KP ++ 
Sbjct: 65  VKAIVIC-GANGNFCAGADIH----GFSAFTPGLALGSLVD-------EIQRYQKPVLAA 112

Query: 172 MDGVTMGFG--IGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG------ 223
           + GV +G G  + +  H  YRI   K  + +PE  +G+ P          G  G      
Sbjct: 113 IQGVALGGGLELALGCH--YRIANAKARVGLPEVTLGILP----------GARGTQLLPR 160

Query: 224 --GSVGAYLGM--TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV 268
             G   A L +  +GK +S   +AL  G+    V S  +    +    +
Sbjct: 161 VVGVPVA-LDLITSGKYLS-ADEALRLGILDAVVKSDPVEEAIKFAQKI 207

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score = 85.6 bits (213), Expect = 4e-19
 Identities = 48/253 (18%), Positives = 82/253 (32%), Gaps = 41/253 (16%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS-GPRAFCAGMDIKG 133
           N VAVI  +  + LNA++          L +      ++C+++    G + F AG DI  
Sbjct: 12  NKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIH- 69

Query: 134 VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
              E+      PL       +  +   I ++ KP IS+++G   G    +       I  
Sbjct: 70  ---ELPSGGRDPLSYDDPLRQ--ITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAA 124

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDA 243
             +  +M    +G+                G        G ++      T   I+    A
Sbjct: 125 STSTFSMTPVNLGVPY--NL---------VGIHNLTRDAGFHIVKELIFTASPITA-QRA 172

Query: 244 LFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYSSDPEGEAPLK------ 296
           L  G+    V    L      L +A   SE     +   + K      GEA         
Sbjct: 173 LAVGILNHVVEVEEL--EDFTLQMAHHISEKAP--LAIAVIKEELRVLGEAHTMNSDEFE 228

Query: 297 LLLPQITSCFSSE 309
            +     + + SE
Sbjct: 229 RIQGMRRAVYDSE 241

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 87.7 bits (218), Expect = 7e-19
 Identities = 53/210 (25%), Positives = 82/210 (39%), Gaps = 27/210 (12%)

Query: 59  MAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE 118
           M +    + V   V  +GVAVITL  P   N+++ D+    KS  +E  S   VK ++I 
Sbjct: 1   MDSRTKGKTVM-EVGGDGVAVITLINPPV-NSLSFDVLYNLKSNYEEALSRNDVKAIVIT 58

Query: 119 GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMG 178
                 F  G DI G     + +   P    +      +   +   +KP ++ +DG+ +G
Sbjct: 59  -GAKGRFSGGFDISGFGEMQKGNVKEPKAGYISIDI--ITDLLEAARKPSVAAIDGLALG 115

Query: 179 FGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG--------GSVGAYL 230
            G+ ++     RI      L +PE  +G+ P          G GG        G   A L
Sbjct: 116 GGLELAMACHARISAPAAQLGLPELQLGVIP----------GFGGTQRLPRLVGLTKA-L 164

Query: 231 GM--TGKRISTPSDALFAGLGTDYVPSGNL 258
            M  T K +    +    GL    VP   L
Sbjct: 165 EMILTSKPVK-AEEGHSLGLIDAVVPPAEL 193

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score = 85.0 bits (211), Expect = 8e-19
 Identities = 52/263 (19%), Positives = 92/263 (34%), Gaps = 55/263 (20%)

Query: 72  VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDI 131
              +G+A IT++RP+  NA       +    L +   D  +  +++ G+G +AFC+G D 
Sbjct: 33  KSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQ 92

Query: 132 K------GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG 185
           K      G   +        L             +I    KP ++++ G ++G G    G
Sbjct: 93  KVRGDYGGYKDDSGVHHLNVL--DFQR-------QIRTCPKPVVAMVAGYSIG-G----G 138

Query: 186 HG-----RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM-- 232
           H         I  +  +       +G F             G G+      VG       
Sbjct: 139 HVLHMMCDLTIAADNAIFGQTGPKVGSFD-----------GGWGASYMARIVGQKKAREI 187

Query: 233 --TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYS--S 287
               ++      AL  GL    VP  +L   KE +       +  +  +     K +  +
Sbjct: 188 WFLCRQYDA-KQALDMGLVNTVVPLADL--EKETVRWCREMLQ--NSPMALRCLKAALNA 242

Query: 288 DPEGEAPLKLLLPQITS-CFSSE 309
           D +G+A L+ L    T   + +E
Sbjct: 243 DCDGQAGLQELAGNATMLFYMTE 265

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score = 83.4 bits (207), Expect = 2e-18
 Identities = 40/203 (19%), Positives = 68/203 (33%), Gaps = 32/203 (15%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            G+A +T++RP+  NA       +          D  V  +++ G G  AFC+G D K  
Sbjct: 21  EGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQK-- 78

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLIC--KISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
               ++     +          L     I    KP I+++ G  +G G  ++      I 
Sbjct: 79  ----KRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIA 134

Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSD 242
            +  +       +G F             G GS      VG           ++ +   +
Sbjct: 135 ADNAIFGQTGPKVGSFD-----------AGYGSGYLARIVGHKKAREIWYLCRQYNA-QE 182

Query: 243 ALFAGLGTDYVPSGNLGSLKEAL 265
           AL  GL    VP   +    E +
Sbjct: 183 ALDMGLVNTVVPLEKV--EDETV 203

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 85.0 bits (210), Expect = 4e-18
 Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 41/211 (19%)

Query: 75  NGVAVITLDRPK----------ALNAMNLDMDIKYKSFLDEWESD-PRVKCVLIEGSGPR 123
             VA + +D  +           LN+ +L +DI+    +     + P V+ V++     R
Sbjct: 29  GPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDR 88

Query: 124 AFCAGMDIK--GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFG- 180
            FC+G +I   G+     K        +                  +++ ++G   G G 
Sbjct: 89  VFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDS---SRHSGLKFLAAVNGACAGGGY 145

Query: 181 -IGISGHGRYRIVTEKTLLAMPE-NGIGLFPDVGFSYIAAKGPGGG-------SVGAYLG 231
            + ++    Y +    + +++PE   +G+ P          G GG         V     
Sbjct: 146 ELALACDEIYLVDDRSSSVSLPEVPLLGVLP----------GTGGLTRVTDKRKVRHDRA 195

Query: 232 M----TGKRISTPSDALFAGLGTDYVPSGNL 258
                  + +     A    L  + V     
Sbjct: 196 DIFCTVVEGVR-GERAKAWRLVDEVVKPNQF 225

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 83.8 bits (208), Expect = 1e-17
 Identities = 38/198 (19%), Positives = 76/198 (38%), Gaps = 30/198 (15%)

Query: 74  PNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
            +G+  +  D   +++N  N     + +  +D  ++D  VK V++  SG   F  G DI 
Sbjct: 14  ESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVS-SGKDVFIVGADIT 72

Query: 133 GVVAEIQKDRNTPLVPKVFTAEY--SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYR 190
               E  ++   P    +        +     +   P ++ ++G+ +G G+ +     +R
Sbjct: 73  ----EFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFR 128

Query: 191 IVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG--------GSVGAYLGM--TGKRISTP 240
           ++ +   + +PE  +G++P          G GG        G   A +    +GK     
Sbjct: 129 VMADSAKIGLPEVKLGIYP----------GFGGTVRLPRLIGVDNA-VEWIASGKENR-A 176

Query: 241 SDALFAGLGTDYVPSGNL 258
            DAL        V +  L
Sbjct: 177 EDALKVSAVDAVVTADKL 194

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 38/209 (18%), Positives = 67/209 (32%), Gaps = 43/209 (20%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + +A ITL+RP+A NA N ++  +  +       D  V  +++  +G + F AG D++G 
Sbjct: 28  DRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANG-KHFSAGHDLRGG 86

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFG--------IGISGH 186
                K     +             +     KP I+ + G  +  G        +     
Sbjct: 87  GPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDL----- 141

Query: 187 GRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKR 236
               I  E  L + P   + +              G         +G         TG+ 
Sbjct: 142 ---IIAAEDALFSDPVVLMDI-------------GGVEYHGHTWELGPRKAKEILFTGRA 185

Query: 237 ISTPSDALFAGLGTDYVPSGNLGSLKEAL 265
           + T  +    G+    VP   L    E  
Sbjct: 186 M-TAEEVAQTGMVNRVVPRDRL--DAETR 211

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score = 78.8 bits (195), Expect = 1e-16
 Identities = 56/264 (21%), Positives = 86/264 (32%), Gaps = 59/264 (22%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP-----RAFCAGM 129
            G+A I ++RP   NA       +          D R+  VL+ G+GP      AFC+G 
Sbjct: 18  GGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGG 77

Query: 130 DIK-----GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGIS 184
           D       G + +    R   L          L   I    K  I+L+ G  +G G    
Sbjct: 78  DQSVRGEGGYIDDQGTPRLNVL---------DLQRLIRSMPKVVIALVAGYAIG-G---- 123

Query: 185 GHGR-----YRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM- 232
           GH         I  +  +       +G F             G GS      VG      
Sbjct: 124 GHVLHLVCDLTIAADNAIFGQTGPKVGSFD-----------GGFGSSYLARIVGQKKARE 172

Query: 233 ---TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYS-- 286
                ++ S   +A   G+    VP   L   +E +  A          +     K +  
Sbjct: 173 IWYLCRQYSA-QEAERMGMVNTVVPVDRL--EEEGIQWAKEILSKSP--LAIRCLKAAFN 227

Query: 287 SDPEGEAPLKLLLPQIT-SCFSSE 309
           +D +G+A L+ L    T   + +E
Sbjct: 228 ADCDGQAGLQELAGNATLLYYMTE 251

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score = 76.3 bits (188), Expect = 9e-16
 Identities = 37/215 (17%), Positives = 62/215 (28%), Gaps = 38/215 (17%)

Query: 75  NGVAVITLDRPKALN--------AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFC 126
             V  I +    A+N         +  D+     +      +   +   ++  S    F 
Sbjct: 40  RDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFN 99

Query: 127 AGMDIKGVVAEIQKDRNTPLV--PKVFTAEYSLICKISEYKKPYISLMDGVTMGFG--IG 182
            G D+      I++     L+   +               +   I+L+ G  +G G    
Sbjct: 100 LGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAA 159

Query: 183 ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM---- 232
           +S H    I  E  ++ +PE    LFP  G          G        + A+L      
Sbjct: 160 LSCH--TIIAEEGVMMGLPEVLFDLFP--GM---------GAYSFMCQRISAHLAQKIML 206

Query: 233 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLA 267
            G   S     L  GL    VP G    +      
Sbjct: 207 EGNLYSA-EQLLGMGLVDRVVPRGQG--VAAVEQV 238

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 5e-08
 Identities = 71/518 (13%), Positives = 143/518 (27%), Gaps = 179/518 (34%)

Query: 9   SVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCN--PQT---------SGNSRTFA 57
           + +Q+F K +        ++R Q +      +R +     P           SG +    
Sbjct: 121 NDNQVFAKYN--------VSRLQPYLK----LRQALLELRPAKNVLIDGVLGSGKT---- 164

Query: 58  TMAAAGAEEFVKGNVHPNGVAVITL---DRPKA----LNAMNLDMDIKYKSFLDEWESDP 110
            +A      +         +  + L   + P+     L  +   +D  + S  D   +  
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 111 RVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP---LV------PKVFTAEYSLICKI 161
                 I             I+  +  + K +      LV       K + A ++L CKI
Sbjct: 225 L----RIH-----------SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKI 268

Query: 162 ---SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM-PENGIGLFPDVGFSYIA 217
              + +K     + D +        S      I  +   + + P+    L          
Sbjct: 269 LLTTRFK----QVTDFL--------SAATTTHISLDHHSMTLTPDEVKSLL--------- 307

Query: 218 AKGPGGGSVGAYLGMTGKRISTPSDA---------LFA-----GLGT-DYVPSGNLGSLK 262
            K         YL    + +  P +          + A     GL T D     N   L 
Sbjct: 308 LK---------YLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 263 EAL------------------LAVTFSEDPH------------------QDIVALLAKYS 286
             +                  L+V F    H                    +V  L KYS
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 287 SDPEGEAPLKLLLPQI---TSCFSSEKSV--RQIIEELKKHQS-SAETSVAQWADEA--- 337
              +      + +P I          +    R I++     ++  ++  +  + D+    
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 338 -----LQGMGKGAPFSLCLTQKYF------SKV---ASAHGKTDNELSKLSGVMKYEYRV 383
                L+ +      +L     +        K+   ++A   + + L+ L  +  Y+  +
Sbjct: 476 HIGHHLKNIEHPERMTL-FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 384 ALRSSLRS-------DFAEGVRAVLV-DKDQVLSQLKL 413
                          DF   +   L+  K   L ++ L
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	414
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.85
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.82
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.78
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.59
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.58
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.46
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.46
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	98.92
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	98.48
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.44
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	98.42
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	98.33
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	98.21
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	97.89
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.78
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	97.72
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	97.69
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.55
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.43
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.37
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.33
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.23
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	97.1
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	96.91
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.69
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.42
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	96.39
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	95.79
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	95.26
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	95.17
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	94.48
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	93.29
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	93.21
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	91.35
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	89.27
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	86.45
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	80.81

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=4.3e-67  Score=522.03  Aligned_cols=317  Identities=36%  Similarity=0.620  Sum_probs=282.9

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      ..++.|.+++ +|+|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||+|+++||+|+|++++......  
T Consensus         6 ~~~e~vl~e~-~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~--   82 (353)
T 4hdt_A            6 AKNEDVLVNV-EGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKA--   82 (353)
T ss_dssp             --CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHT--
T ss_pred             CCCCcEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccch--
Confidence            3568899997 7999999999999999999999999999999999999999999999998899999999998764322  


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                      +......++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g  162 (353)
T 4hdt_A           83 DGAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG  162 (353)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST
T ss_pred             hhHHHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh
Confidence            22334557777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                       . ++++|+|||++|+ |+||+++||||+|||++++++.+.+++..        .+...+..+.... +...+......|
T Consensus       163 -~-~a~~l~ltG~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~la~~--------~~~~~l~~~~~~~-~~~~l~~~~~~i  230 (353)
T 4hdt_A          163 -K-LGLHAALTGAPFS-GADAIVMGFADHYVPHDKIDEFTRAVIAD--------GVDAALAAHAQEP-PASPLAEQRSWI  230 (353)
T ss_dssp             -T-HHHHHHHHCCCBC-HHHHHHHTSCSEECCGGGHHHHHHHHHHH--------CHHHHHHHHCBCC-CCCHHHHTHHHH
T ss_pred             -H-HHHHHHhcCCCCC-HHHHHHcCCCcEEeCHHHHHHHHHHHHHh--------chhHHHHHhcccC-CccchHHHHHHH
Confidence             4 8999999999999 99999999999999999999999888765        3456666665544 345677888999


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                      ++||+.+ ++++|++.|+...       ..|+.++++.|+++||+|++++|++++++.        ...+++++++.|.+
T Consensus       231 ~~~f~~~-~~~~i~~~L~~~~-------~~~a~~~a~~la~~sP~a~~~~k~~l~~~~--------~~~sl~e~l~~E~~  294 (353)
T 4hdt_A          231 DECYTGD-TVADIIAALRAHD-------APAAGEAADLIATRSPIALSVTLESVRRAA--------KLQSLEDTLRQEYR  294 (353)
T ss_dssp             HHHTTCS-SHHHHHHHHHHHC-------SHHHHHHHHHHTTSCHHHHHHHHHHHHHHT--------TCCCHHHHHHHHHH
T ss_pred             HHHhCCC-CHHHHHHHHHhcc-------cHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--------cCCCHHHHHHHHHH
Confidence            9999988 9999999999887       589999999999999999999999999987        24589999999999


Q ss_pred             HHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          383 VALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       383 ~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ++..++.++||+|||+|||+||+|+|+|
T Consensus       295 ~~~~~~~s~D~~EGvrAfl~dekR~P~w  322 (353)
T 4hdt_A          295 VSCASLKSHDLVEGIRAQLVDKDRNPKW  322 (353)
T ss_dssp             HHHHHTTCHHHHHHHHHHHC----CCCC
T ss_pred             HHHHHhCCchHHHHHhhhhhCcCCCCCC
Confidence            9999999999999999999999999987

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=8.5e-64  Score=506.22  Aligned_cols=327  Identities=31%  Similarity=0.525  Sum_probs=285.2

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC-
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR-  142 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~-  142 (414)
                      .++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++........ 
T Consensus        40 ~~~~v~~~~-~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~  118 (407)
T 3ju1_A           40 VFQTLATAS-GKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKG  118 (407)
T ss_dssp             EEEEEECTT-SCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTS
T ss_pred             ccceEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhccccccc
Confidence            356677775 799999999999999999999999999999999999999999999998789999999999876432111 


Q ss_pred             -CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCC
Q 015014          143 -NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP  221 (414)
Q Consensus       143 -~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~  221 (414)
                       .......++...+.++.+|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++
T Consensus       119 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~  198 (407)
T 3ju1_A          119 QVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMP  198 (407)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhh
Confidence             1223445667777889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcH---HHHHHHHHhhc---CCCCCcchh
Q 015014          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH---QDIVALLAKYS---SDPEGEAPL  295 (414)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~---~~~~~~l~~~~---~~~~~~~~~  295 (414)
                      | . ++++|+|||++|+ |+||+++|||++|||++++.+..++|....+...+.   ....+++.+|.   ....+...+
T Consensus       199 g-~-~A~~l~ltG~~i~-A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l  275 (407)
T 3ju1_A          199 G-K-MGLFLGLTAYHMN-AADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVL  275 (407)
T ss_dssp             T-T-HHHHHHHHCCCBC-HHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHH
T ss_pred             H-H-HHHHHHHcCCcCc-HHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhH
Confidence            9 6 9999999999999 999999999999999999988777877654444322   23445555442   233456678


Q ss_pred             hhhHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHH
Q 015014          296 KLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSG  375 (414)
Q Consensus       296 ~~~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~  375 (414)
                      ......|++||+  .++++|+++|++...  +   .+|+++++++|+++||.|++++|++++++.         ..++++
T Consensus       276 ~~~~~~I~~~f~--~sv~~i~~~L~~~~~--~---~~~a~~~a~~la~~sP~sl~~tk~~l~~~~---------~~~l~~  339 (407)
T 3ju1_A          276 AESQEMIDRLMA--GSLTDIVTRMSTLST--D---EAWLSKACATMLAGSPISWHLAYIQTQLGT---------KLSLAQ  339 (407)
T ss_dssp             HHTHHHHHHHTC--SCHHHHHHHHHHCCC--S---CHHHHHHHHHHHHSCHHHHHHHHHHHHTTT---------CSCHHH
T ss_pred             HHHHHHHHHHhc--CCHHHHHHHHHhccc--c---cHHHHHHHHHHHhCCHHHHHHHHHHHHhhh---------cCCHHH
Confidence            899999999999  599999999987532  1   489999999999999999999999999987         678999


Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          376 VMKYEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       376 ~l~~e~~~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +++.|.+++..++.++||+|||+||++||+|+|+|
T Consensus       340 ~l~~E~~~~~~~~~s~D~~EGvrAflidKdr~P~w  374 (407)
T 3ju1_A          340 CFKWELTVSVNVCAKGDFCEGVRALLIDKDKQPKW  374 (407)
T ss_dssp             HHHHHHHHHHHHHHHSSHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCcCCCC
Confidence            99999999999999999999999999999999988

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=2.7e-61  Score=482.45  Aligned_cols=321  Identities=38%  Similarity=0.619  Sum_probs=279.2

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      .+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++..... . ..
T Consensus         5 ~~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~-~-~~   81 (363)
T 3bpt_A            5 AEEVLLGK-KGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEK-A-KQ   81 (363)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHT-S-SC
T ss_pred             CcceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcc-c-cc
Confidence            34577876 799999999999999999999999999999999999999999999997789999999999865321 1 11


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      .....++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|. 
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-  160 (363)
T 3bpt_A           82 KIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK-  160 (363)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTT-
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHH-
Confidence            2233455556678889999999999999999999999999999999999999999999999999999999999999994 


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCC----CCCcchhhhhHH
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSD----PEGEAPLKLLLP  300 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~  300 (414)
                       ++++|+|||+.|+ |+||+++|||++|||++++.+.++++++... . +...++..++.|...    .+....+.....
T Consensus       161 -~a~~l~ltg~~i~-A~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~-~-~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~  236 (363)
T 3bpt_A          161 -LGYFLALTGFRLK-GRDVYRAGIATHFVDSEKLAMLEEDLLALKS-P-SKENIASVLENYHTESKIDRDKSFILEEHMD  236 (363)
T ss_dssp             -HHHHHHHHCCCEE-THHHHHTTSCSEECCGGGHHHHHHHHHHCSS-C-CHHHHHHHHHHHHHHCCTTTTCCCTTGGGHH
T ss_pred             -HHHHHHHcCCCCC-HHHHHHCCCcceecCHHHHHHHHHHHHhccc-C-CHHHHHHHHHHHHhhhcccCCCchhhHHHHH
Confidence             7999999999999 9999999999999999999877777765422 2 335666666666421    222456777889


Q ss_pred             HHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHH
Q 015014          301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE  380 (414)
Q Consensus       301 ~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e  380 (414)
                      .|++||+.+ ++++|+++|+++.       .+|+.+++++|+++||.|++++|++++++.         ..+++++++.|
T Consensus       237 ~i~~~f~~~-~~~ei~~al~~~~-------~~~a~~~a~~la~~sP~al~~~k~~l~~~~---------~~~l~~~l~~E  299 (363)
T 3bpt_A          237 KINSCFSAN-TVEEIIENLQQDG-------SSFALEQLKVINKMSPTSLKITLRQLMEGS---------SKTLQEVLTME  299 (363)
T ss_dssp             HHHHHTTSS-SHHHHHHHHHHHC-------CHHHHHHHHHHTTSCHHHHHHHHHHHHHHT---------TSCHHHHHHHH
T ss_pred             HHHHHhCCC-CHHHHHHHHhccC-------hHHHHHHHHHHHhCCchHHHHHHHHHHHHH---------hCCHHHHHHHH
Confidence            999999987 9999999998864       589999999999999999999999999887         56899999999


Q ss_pred             HHHHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          381 YRVALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       381 ~~~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .+.+..++.++|++|||+||+++|+|+|+|
T Consensus       300 ~~~~~~~~~s~D~~EGv~Afl~eK~r~P~~  329 (363)
T 3bpt_A          300 YRLSQACMRGHDFHEGVRAVLIDKDQSPKW  329 (363)
T ss_dssp             HHHHHHHHTSSHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHhcCccHHhhhhheeeCCCCCCCC
Confidence            999999999999999999999888899987

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=7e-60  Score=450.83  Aligned_cols=250  Identities=26%  Similarity=0.356  Sum_probs=229.0

Q ss_pred             EEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCch
Q 015014           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (414)
Q Consensus        68 v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (414)
                      |.+|+ +|+|++||||||+++|+||.+|+.+|.++++.+++|+++|+|||+|.| ++||+|+|++++...      ....
T Consensus         2 vl~E~-~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~------~~~~   73 (254)
T 3hrx_A            2 VLKER-QDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAG-RAFSAGQDLTEFGDR------KPDY   73 (254)
T ss_dssp             EEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGTTTS------CCCH
T ss_pred             eEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCC-CCcccCccHHHhccc------chhh
Confidence            56676 799999999999999999999999999999999999999999999997 899999999987541      2233


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHH
Q 015014          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (414)
Q Consensus       148 ~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a  227 (414)
                      ..+....+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.+ ++
T Consensus        74 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~-~A  152 (254)
T 3hrx_A           74 EAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLA-KA  152 (254)
T ss_dssp             HHHTHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHH-HH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcc-hH
Confidence            44666677888999999999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcC
Q 015014          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS  307 (414)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~  307 (414)
                      ++|++||++|+ |+||+++||||+|||++++.+.+.+++.                                        
T Consensus       153 ~~llltg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~----------------------------------------  191 (254)
T 3hrx_A          153 QELLLLSPRLS-AEEALALGLVHRVVPAEKLMEEALSLAK----------------------------------------  191 (254)
T ss_dssp             HHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHHHHHH----------------------------------------
T ss_pred             HHHhhcCcccC-HHHHHHCCCeEEecCcHHHHHHHHHHHH----------------------------------------
Confidence            99999999999 9999999999999999998765555443                                        


Q ss_pred             CcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHh
Q 015014          308 SEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRS  387 (414)
Q Consensus       308 ~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~  387 (414)
                                                      +|+++||.+++.+|+++++..         ..+++++++.|...+..+
T Consensus       192 --------------------------------~la~~~~~a~~~~K~~~~~~~---------~~~~~~~l~~e~~~~~~~  230 (254)
T 3hrx_A          192 --------------------------------ELAQGPTRAYALTKKLLLETY---------RLSLTEALALEAVLQGQA  230 (254)
T ss_dssp             --------------------------------HHHTSCHHHHHHHHHHHHHGG---------GSCHHHHHHHHHHHHHHH
T ss_pred             --------------------------------HhhccchHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHHH
Confidence                                            499999999999999999987         678999999999999999


Q ss_pred             CCCchHHHHHHhhHhCCCCCCCC
Q 015014          388 SLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       388 ~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +.++|++|||+||+  +||+|+|
T Consensus       231 ~~s~d~~Eg~~AF~--eKR~P~f  251 (254)
T 3hrx_A          231 GQTQDHEEGVRAFR--EKRPPRF  251 (254)
T ss_dssp             HTSHHHHHHHHHHH--TTSCCCC
T ss_pred             hCCHHHHHHHHHHh--CCCCCCC
Confidence            99999999999999  6788876

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=1.7e-59  Score=452.64  Aligned_cols=259  Identities=25%  Similarity=0.387  Sum_probs=226.5

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      +++|.+++ +|||++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...... ...
T Consensus        14 ~e~il~~~-~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G-~~FcaG~Dl~~~~~~~~~-~~~   90 (274)
T 4fzw_C           14 MEFILSHV-EKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAG-RGFCAGQDLNDRNVDPTG-PAP   90 (274)
T ss_dssp             --CEEEEE-ETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCCC----------CC
T ss_pred             cccEEEEE-ECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceeCCcChHhhhccccc-cch
Confidence            46788887 799999999999999999999999999999999999999999999998 899999999987643211 122


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      +....+....+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus        91 ~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  170 (274)
T 4fzw_C           91 DLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRA  170 (274)
T ss_dssp             CHHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHH
Confidence            33333444456788899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       ++++|++||+.|+ |+||+++|||++|||++++.+.+.++++                                     
T Consensus       171 -~A~~llltg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~-------------------------------------  211 (274)
T 4fzw_C          171 -RAMGLALLGNQLS-AEQAHEWGMIWQVVDDETLADTAQQLAR-------------------------------------  211 (274)
T ss_dssp             -HHHHHHHHCCCEE-HHHHHHTTSSSEEECGGGHHHHHHHHHH-------------------------------------
T ss_pred             -HHHHHHHhCCcCC-HHHHHHCCCceEEeChHHHHHHHHHHHH-------------------------------------
Confidence             9999999999999 9999999999999999988765555443                                     


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                                                         +|+++||.+++.+|++++...         ..+++++++.|.+.+
T Consensus       212 -----------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~l~~e~~~~  247 (274)
T 4fzw_C          212 -----------------------------------HLATQPTFGLGLIKQAINSAE---------TNTLDTQLDLERDYQ  247 (274)
T ss_dssp             -----------------------------------HHTTSCHHHHHHHHHHHHHHT---------SSCHHHHHHHHHHHH
T ss_pred             -----------------------------------HHHcCCHHHHHHHHHHHHHhh---------hCCHHHHHHHHHHHH
Confidence                                               499999999999999999987         678999999999999


Q ss_pred             HHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          385 LRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       385 ~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      ..++.++|++|||+||+  +||+|+|.
T Consensus       248 ~~~~~s~d~~Egv~AF~--eKR~P~f~  272 (274)
T 4fzw_C          248 RLAGRSADYREGVSAFL--AKRSPQFT  272 (274)
T ss_dssp             HHHTTSHHHHHHHHHHH--C-CCCCCC
T ss_pred             HHHhcCHHHHHHHHHHh--CCCCCCCC
Confidence            99999999999999999  67888873

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=2.7e-59  Score=447.53  Aligned_cols=251  Identities=21%  Similarity=0.317  Sum_probs=227.3

Q ss_pred             ccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCC
Q 015014           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (414)
Q Consensus        66 ~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (414)
                      ..|.+++ +|+|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...       .
T Consensus         5 s~l~ve~-~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~-------~   75 (258)
T 4fzw_A            5 SELIVSR-QQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNA-RFFAAGADLNEMAEK-------D   75 (258)
T ss_dssp             CEEEEEE-ETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCS-SEEEECBCHHHHHTC-------C
T ss_pred             CcEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCC-CceeCCCchhhhccc-------h
Confidence            4488887 799999999999999999999999999999999999999999999997 999999999987541       1


Q ss_pred             chHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHH
Q 015014          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (414)
Q Consensus       146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~  225 (414)
                      ....+....+.++.++.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.+ 
T Consensus        76 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~-  154 (258)
T 4fzw_A           76 LAATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKS-  154 (258)
T ss_dssp             HHHHHTCSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH-
T ss_pred             hhhHHHhHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHH-
Confidence            1122233345677889999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhh
Q 015014          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (414)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~  305 (414)
                      ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++                                      
T Consensus       155 ~A~~llltg~~i~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~--------------------------------------  195 (258)
T 4fzw_A          155 LASKMVLSGESIT-AQQAQQAGLVSDVFPSDLTLEYALQLAS--------------------------------------  195 (258)
T ss_dssp             HHHHHHHHCCCEE-HHHHHHHTSCSEEECTTTHHHHHHHHHH--------------------------------------
T ss_pred             HHHHHHHcCCcCc-HHHHHHCCCeeEEeCchHHHHHHHHHHH--------------------------------------
Confidence            9999999999999 9999999999999999998765555443                                      


Q ss_pred             cCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHH
Q 015014          306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL  385 (414)
Q Consensus       306 F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~  385 (414)
                                                        +|+++||.+++.+|+++++..         ..+++++++.|.+.+.
T Consensus       196 ----------------------------------~la~~~p~a~~~~K~~l~~~~---------~~~l~~~l~~e~~~~~  232 (258)
T 4fzw_A          196 ----------------------------------KMARHSPLALQAAKQALRQSQ---------EVALQAGLAQERQLFT  232 (258)
T ss_dssp             ----------------------------------HHTTSCHHHHHHHHHHHHHHT---------TSCHHHHHHHHHHHHH
T ss_pred             ----------------------------------HHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHH
Confidence                                              499999999999999999987         6789999999999999


Q ss_pred             HhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          386 RSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       386 ~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .++.++|++|||+||+  +||+|+|
T Consensus       233 ~~~~s~d~~Eg~~AF~--eKR~P~f  255 (258)
T 4fzw_A          233 LLAATEDRHEGISAFL--QKRTPDF  255 (258)
T ss_dssp             HHHTSHHHHHHHHHHH--TTSCCCC
T ss_pred             HHhcCHHHHHHHHHHh--CCCCCCC
Confidence            9999999999999999  6788876

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=7.8e-58  Score=439.16  Aligned_cols=259  Identities=21%  Similarity=0.284  Sum_probs=233.0

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      |.+++|.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++...     
T Consensus         5 m~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~-----   79 (265)
T 3kqf_A            5 LQLQNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGM-----   79 (265)
T ss_dssp             --CCSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTC-----
T ss_pred             ccCCeEEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhcc-----
Confidence            457889998338999999999999999999999999999999999999999999999987899999999987642     


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                      .......+....+.++.++.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG  159 (265)
T 3kqf_A           80 NEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIG  159 (265)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhC
Confidence            11123345566677888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||+.++ |+||+++||||+|||++++.+.+.++++                                   
T Consensus       160 ~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~-----------------------------------  202 (265)
T 3kqf_A          160 VG-RAKELIYTGRRIS-AQEAKEYGLVEFVVPVHLLEEKAIEIAE-----------------------------------  202 (265)
T ss_dssp             HH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHHHHHH-----------------------------------
T ss_pred             HH-HHHHHHHcCCCCC-HHHHHHCCCccEEeCHHHHHHHHHHHHH-----------------------------------
Confidence            98 9999999999999 9999999999999999888765544443                                   


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                                                           +|+++||.+++.+|+++++..         ..+++++++.|.+
T Consensus       203 -------------------------------------~la~~~p~a~~~~K~~l~~~~---------~~~l~~~l~~e~~  236 (265)
T 3kqf_A          203 -------------------------------------KIASNGPIAVRLAKEAISNGI---------QVDLHTGLQMEKQ  236 (265)
T ss_dssp             -------------------------------------HHHTSCHHHHHHHHHHHHHHT---------TSCHHHHHHHHHH
T ss_pred             -------------------------------------HHHcCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHH
Confidence                                                 499999999999999999887         6789999999999


Q ss_pred             HHHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          383 VALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       383 ~~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      .+..++.++|++|||++|+  ++|+|+|-
T Consensus       237 ~~~~~~~s~d~~eg~~af~--ekr~p~f~  263 (265)
T 3kqf_A          237 AYEGVIHTKDRLEGLQAFK--EKRTPMYK  263 (265)
T ss_dssp             HHHHHHTCHHHHHHHHHHH--TTSCCCCC
T ss_pred             HHHHHhCCHHHHHHHHHHH--cCCCCCCC
Confidence            9999999999999999999  77888874

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=1.5e-56  Score=433.32  Aligned_cols=260  Identities=20%  Similarity=0.310  Sum_probs=233.1

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      .++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....... .
T Consensus        15 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~   91 (279)
T 3g64_A           15 EWRHLRVEI-TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEG-RGFCSGGDVDEIIGATLSM-D   91 (279)
T ss_dssp             CCSSEEEEE-ETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECS-SCSBCCBCTTTTHHHHTTC-C
T ss_pred             CCCeEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceecCcCHHHHhhccccc-h
Confidence            467899987 799999999999999999999999999999999999999999999998 8999999999987643211 1


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCC-CChhHHHHHhhCCC
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLF-PDVGFSYIAAKGPG  222 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~-P~~g~~~~L~r~~G  222 (414)
                      ......+....+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++ |++|++++|++++|
T Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG  171 (279)
T 3g64_A           92 TARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVG  171 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhC
Confidence            11122344455678889999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++                                   
T Consensus       172 ~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~-----------------------------------  214 (279)
T 3g64_A          172 LG-HATRLLMLGDTVR-APEAERIGLISELTEEGRADEAARTLAR-----------------------------------  214 (279)
T ss_dssp             HH-HHHHHHHHCCCEE-HHHHHHHTCCSEECCTTCHHHHHHHHHH-----------------------------------
T ss_pred             HH-HHHHHHHcCCCcC-HHHHHHCCCCCEecCchHHHHHHHHHHH-----------------------------------
Confidence            98 9999999999999 9999999999999999998765555443                                   


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                                                           +|++.||.+++.+|++++...         ..+++++++.|..
T Consensus       215 -------------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~  248 (279)
T 3g64_A          215 -------------------------------------RLADGPALAHAQTKALLTAEL---------DMPLAAAVELDAS  248 (279)
T ss_dssp             -------------------------------------HHHTSCHHHHHHHHHHHHHHT---------TSCHHHHHHHHHH
T ss_pred             -------------------------------------HHHhCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHH
Confidence                                                 499999999999999999886         5689999999999


Q ss_pred             HHHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          383 VALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       383 ~~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      .+..++.++|++||++||+  ++|+|+|-
T Consensus       249 ~~~~~~~s~d~~eg~~af~--ekr~p~f~  275 (279)
T 3g64_A          249 TQALLMTGEDYAEFHAAFT--EKRPPKWQ  275 (279)
T ss_dssp             HHHHHTTSHHHHHHHHHHH--TTSCCCCC
T ss_pred             HHHHHhcCHHHHHHHHHHh--cCCCCCCC
Confidence            9999999999999999999  66888874

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=9.2e-57  Score=432.24  Aligned_cols=259  Identities=19%  Similarity=0.247  Sum_probs=228.6

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      |+++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......  
T Consensus         1 M~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~--   76 (268)
T 3i47_A            1 MSLSDLLYEI-QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANG-KHFSAGADLTWMQSMANF--   76 (268)
T ss_dssp             -CCCSEEEEE-ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECS-SCSBCSBCHHHHHHHHTC--
T ss_pred             CCCCEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCeeCCCChhhhhccccc--
Confidence            4567899987 799999999999999999999999999999999999999999999998 899999999998763211  


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                      .......+....+.++.++.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++ +|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG  155 (268)
T 3i47_A           77 TEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIG  155 (268)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhC
Confidence            111112234455678889999999999999999999999999999999999999999999999999999988 7899999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++                                   
T Consensus       156 ~~-~A~~llltg~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~a~-----------------------------------  198 (268)
T 3i47_A          156 ER-AAKMLFMSAEVFD-ATRAYSLNLVQHCVPDDTLLEFTLKYAS-----------------------------------  198 (268)
T ss_dssp             HH-HHHHHHHHCCEEE-HHHHHHTTSCSEEECGGGHHHHHHHHHH-----------------------------------
T ss_pred             HH-HHHHHHHcCCccC-HHHHHHcCCCcEeeChhHHHHHHHHHHH-----------------------------------
Confidence            98 9999999999999 9999999999999999888765555443                                   


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHH-HHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSG-VMKYEY  381 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~-~l~~e~  381 (414)
                                                           +|+++||.+++.+|++++...         ..++++ .++.|.
T Consensus       199 -------------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~~e~  232 (268)
T 3i47_A          199 -------------------------------------QISNNAPEAVKNSKQLAQYVA---------NKKIDEELVRYTA  232 (268)
T ss_dssp             -------------------------------------HHHTSCHHHHHHHHHHHHHHT---------TCCCSHHHHHHHH
T ss_pred             -------------------------------------HHHcCCHHHHHHHHHHHHhhh---------cCChhHHHHHHHH
Confidence                                                 499999999999999999876         456777 688999


Q ss_pred             HHHHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          382 RVALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       382 ~~~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      +.+..++.++|++||++||+  ++|+|+|.
T Consensus       233 ~~~~~~~~s~d~~eg~~AF~--ekR~p~f~  260 (268)
T 3i47_A          233 SLIAHKRVSDEGQEGLKAFL--NKEIPNWN  260 (268)
T ss_dssp             HHHHHHHHSHHHHHHHHHHH--HTCCCTTC
T ss_pred             HHHHHHhcCHHHHHHHHHHH--cCCCCCCC
Confidence            99999999999999999999  78888873

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=3.9e-56  Score=425.09  Aligned_cols=250  Identities=24%  Similarity=0.348  Sum_probs=226.8

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      +++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..       
T Consensus         4 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~-------   74 (255)
T 3p5m_A            4 SMNGISVEH-DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAG-RAFCSGGDLTGGDT-------   74 (255)
T ss_dssp             CBTTEEEEE-ETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCEECC---CH-------
T ss_pred             CCceEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCCCChhhhcc-------
Confidence            455688887 799999999999999999999999999999999999999999999998 89999999998752       


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                          ..+....+.++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.
T Consensus        75 ----~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~  150 (255)
T 3p5m_A           75 ----AGAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGR  150 (255)
T ss_dssp             ----HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCH
T ss_pred             ----hHHHHHHHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCH
Confidence                0244555678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|++||+.++ |+||+++||||+|+|++++.+.+.++++                                    
T Consensus       151 ~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~------------------------------------  192 (255)
T 3p5m_A          151 A-RTSRMAMTAEKIS-AATAFEWGMISHITSADEYESVLTDVLR------------------------------------  192 (255)
T ss_dssp             H-HHHHHHHHCCCEE-HHHHHHTTSCSEECCTTCHHHHHHHHHH------------------------------------
T ss_pred             H-HHHHHHHcCCCcC-HHHHHHCCCCCEeeCHHHHHHHHHHHHH------------------------------------
Confidence            8 9999999999999 9999999999999999998766555543                                    


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                          +|++.||.+++.+|+++++..         ..+++++++.|.+.
T Consensus       193 ------------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~l~~e~~~  227 (255)
T 3p5m_A          193 ------------------------------------SVSGGPTLAFGWTKRALAAAT---------LAELEPVQAIEAEG  227 (255)
T ss_dssp             ------------------------------------HHHTSCHHHHHHHHHHHHHHH---------CTTHHHHHHHHHHH
T ss_pred             ------------------------------------HHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHH
Confidence                                                499999999999999999887         56899999999999


Q ss_pred             HHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          384 ALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      +..++.++|++||+++|+  ++|+|+|-
T Consensus       228 ~~~~~~s~d~~eg~~af~--ekr~p~f~  253 (255)
T 3p5m_A          228 QLALVETADFREGARAFR--ERRTPNFR  253 (255)
T ss_dssp             HHHHTTSHHHHHHHHHHH--TTSCCCCC
T ss_pred             HHHHhCCHHHHHHHHHHH--cCCCCCCC
Confidence            999999999999999999  67788763

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=1.3e-56  Score=433.11  Aligned_cols=255  Identities=24%  Similarity=0.313  Sum_probs=226.5

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      |+++.|.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....    
T Consensus        22 m~~~~v~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~----   95 (278)
T 3h81_A           22 MTYETILVER-DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-KAFAAGADIKEMADLT----   95 (278)
T ss_dssp             -CCSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCS-SEEECCBCSHHHHTCC----
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCeecCcCHHHHhccC----
Confidence            5678899987 789999999999999999999999999999999999999999999976 9999999999986421    


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                         ....+....+..+.++.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|
T Consensus        96 ---~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG  172 (278)
T 3h81_A           96 ---FADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIG  172 (278)
T ss_dssp             ---HHHHHHHTTTGGGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHC
T ss_pred             ---hhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhC
Confidence               11112222223366789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||+.++ |+||+++||||+|||++++.+.+.+++                                    
T Consensus       173 ~~-~A~~l~ltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a------------------------------------  214 (278)
T 3h81_A          173 KA-KAMDLILTGRTMD-AAEAERSGLVSRVVPADDLLTEARATA------------------------------------  214 (278)
T ss_dssp             HH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHHHHH------------------------------------
T ss_pred             HH-HHHHHHHhCCCcC-HHHHHHCCCccEEeChhHHHHHHHHHH------------------------------------
Confidence            98 9999999999999 999999999999999988865544443                                    


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                                                          ++|+++||.+++.+|+++++..         ..+++++++.|.+
T Consensus       215 ------------------------------------~~la~~~p~a~~~~K~~l~~~~---------~~~l~~~l~~e~~  249 (278)
T 3h81_A          215 ------------------------------------TTISQMSASAARMAKEAVNRAF---------ESSLSEGLLYERR  249 (278)
T ss_dssp             ------------------------------------HHHHTSCHHHHHHHHHHHHHTT---------TSCHHHHHHHHHH
T ss_pred             ------------------------------------HHHHhCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHH
Confidence                                                3599999999999999999876         5689999999999


Q ss_pred             HHHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          383 VALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       383 ~~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      .+..++.++|++|||+||+  ++|+|+|-
T Consensus       250 ~~~~~~~s~d~~eg~~AF~--ekR~P~f~  276 (278)
T 3h81_A          250 LFHSAFATEDQSEGMAAFI--EKRAPQFT  276 (278)
T ss_dssp             HHHHHTTSHHHHHHHHHHH--TTSCCCCC
T ss_pred             HHHHHhCCHHHHHHHHHHH--cCCCCCCC
Confidence            9999999999999999999  66888774

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=7.9e-56  Score=427.50  Aligned_cols=263  Identities=19%  Similarity=0.273  Sum_probs=227.6

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      |+.|.++.++++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..........
T Consensus         2 ~~~v~~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~~~   80 (275)
T 1dci_A            2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDMASDILQPPGD   80 (275)
T ss_dssp             CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCCBCHHHHHHHHTSCCCS
T ss_pred             CceEEEEEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcChHHHhhcccccccc
Confidence            566888865678999999999999999999999999999999999999999999997 8999999999986532111000


Q ss_pred             C------chHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHh
Q 015014          145 P------LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA  218 (414)
Q Consensus       145 ~------~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~  218 (414)
                      .      ....+......++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~  160 (275)
T 1dci_A           81 DVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLP  160 (275)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGG
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHH
Confidence            1      0112233445677889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCc-HHHHHHHHhcCCCCCcHHHHHHcCccceecCC-CCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhh
Q 015014          219 KGPGG-GSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLK  296 (414)
Q Consensus       219 r~~G~-~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  296 (414)
                      +++|. . ++++|++||+.|+ |+||+++||||+|||+ +++.+.+.+++                              
T Consensus       161 r~vG~~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~~l~~~a~~~a------------------------------  208 (275)
T 1dci_A          161 KVIGNRS-LVNELTFTARKMM-ADEALDSGLVSRVFPDKDVMLNAAFALA------------------------------  208 (275)
T ss_dssp             GTCSCHH-HHHHHHHHCCEEE-HHHHHHHTSSSEEESSHHHHHHHHHHHH------------------------------
T ss_pred             HHhCcHH-HHHHHHHcCCCCC-HHHHHHcCCcceecCChHHHHHHHHHHH------------------------------
Confidence            99999 8 9999999999999 9999999999999998 77655444333                              


Q ss_pred             hhHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHH
Q 015014          297 LLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGV  376 (414)
Q Consensus       297 ~~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~  376 (414)
                                                                ++|+++||.+++.+|+++++..         ..+++++
T Consensus       209 ------------------------------------------~~la~~~p~a~~~~K~~l~~~~---------~~~~~~~  237 (275)
T 1dci_A          209 ------------------------------------------ADISSKSPVAVQGSKINLIYSR---------DHSVDES  237 (275)
T ss_dssp             ------------------------------------------HHHHHSCHHHHHHHHHHHHHHH---------HSCHHHH
T ss_pred             ------------------------------------------HHHHhCCHHHHHHHHHHHHHhc---------cCCHHHH
Confidence                                                      3599999999999999999887         5689999


Q ss_pred             HHHHHHHHHHhCCCchHHHHHHhhHhCCC--CCCCCCc
Q 015014          377 MKYEYRVALRSSLRSDFAEGVRAVLVDKD--QVLSQLK  412 (414)
Q Consensus       377 l~~e~~~~~~~~~~~D~~eGv~afl~dk~--~~P~~~~  412 (414)
                      ++.|...+..++.++|++|||+||+ +|+  |+|+|-.
T Consensus       238 l~~e~~~~~~~~~s~d~~eg~~af~-ek~~~r~p~f~~  274 (275)
T 1dci_A          238 LDYMATWNMSMLQTQDIIKSVQAAM-EKKDSKSITFSK  274 (275)
T ss_dssp             HHHHHHHHHHHTSSHHHHHHHHHHH-TTCCGGGCCCCC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHH-hcCCCCCCCCCC
Confidence            9999999999999999999999999 232  7888743

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=1.5e-56  Score=429.41  Aligned_cols=255  Identities=22%  Similarity=0.260  Sum_probs=227.5

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      +++|.++. +++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....    ..
T Consensus         5 ~~~v~~~~-~~~v~~itlnrp~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~----~~   77 (261)
T 3pea_A            5 LKFLSVRV-EDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEG-RFFSAGADIKEFTSVT----EA   77 (261)
T ss_dssp             CSSEEEEE-ETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGSSTTC----CH
T ss_pred             ccceEEEE-ECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceeCCcCHHHHhhcC----ch
Confidence            46788887 79999999999999 999999999999999999999999999999998 8999999999875421    11


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      .....+....+.++.++.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  157 (261)
T 3pea_A           78 KQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKA  157 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHH
Confidence            11222333345578889999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       ++++|++||+.++ |+||+++||||+|||++++.+.+.++++                                     
T Consensus       158 -~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~-------------------------------------  198 (261)
T 3pea_A          158 -KACEMMLTSTPIT-GAEALKWGLVNGVFAEETFLDDTLKVAK-------------------------------------  198 (261)
T ss_dssp             -HHHHHHHHCCCEE-HHHHHHHTSSSEEECGGGHHHHHHHHHH-------------------------------------
T ss_pred             -HHHHHHHcCCCCC-HHHHHHCCCccEecCHHHHHHHHHHHHH-------------------------------------
Confidence             9999999999999 9999999999999999888765544443                                     


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                                                         +|+++||.+++.+|++++...         ..+++++++.|.+.+
T Consensus       199 -----------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~l~~e~~~~  234 (261)
T 3pea_A          199 -----------------------------------QIAGKSPATARAVLELLQTTK---------SSHYYEGVQREAQIF  234 (261)
T ss_dssp             -----------------------------------HHHTSCHHHHHHHHHHHGGGC---------CHHHHHHHHHHHHHH
T ss_pred             -----------------------------------HHHcCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHH
Confidence                                               499999999999999999876         557999999999999


Q ss_pred             HHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          385 LRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       385 ~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      ..++.++|++||+++|+  ++|+|+|-
T Consensus       235 ~~~~~s~d~~eg~~af~--ekr~P~f~  259 (261)
T 3pea_A          235 GEVFTSEDGREGVAAFL--EKRKPSFS  259 (261)
T ss_dssp             HHHHHSHHHHHHHHHHH--TTSCCCCC
T ss_pred             HHHhCCHHHHHHHHHHH--cCCCCCCC
Confidence            99999999999999999  77888874

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=3.6e-56  Score=427.72  Aligned_cols=255  Identities=23%  Similarity=0.316  Sum_probs=218.5

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..........
T Consensus         4 ~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~   81 (266)
T 3fdu_A            4 HPHLNANL-EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAE-HDFTAGNDMKDFMGFVQNPNAG   81 (266)
T ss_dssp             CTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCHHHHHHHHHSCCCS
T ss_pred             CCeEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCeECCcCHHHHhhhccccchh
Confidence            56788887 799999999999999999999999999999999999999999999998 8999999999987322121111


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      .   ......+.++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..
T Consensus        82 ~---~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  158 (266)
T 3fdu_A           82 P---AGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYH  158 (266)
T ss_dssp             C---GGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHH
T ss_pred             h---HHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHH
Confidence            1   1223345677889999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       ++++|++||+.|+ |+||+++||||+|||  ++.+.+.+++                                      
T Consensus       159 -~A~~l~ltg~~i~-A~eA~~~GLv~~vv~--~l~~~a~~~a--------------------------------------  196 (266)
T 3fdu_A          159 -KAAELLFTAKKFN-AETALQAGLVNEIVE--DAYATAQATA--------------------------------------  196 (266)
T ss_dssp             -HHHHHHHHCCEEC-HHHHHHTTSCSEECS--CHHHHHHHHH--------------------------------------
T ss_pred             -HHHHHHHhCCCcC-HHHHHHCCCHHHHHH--HHHHHHHHHH--------------------------------------
Confidence             9999999999999 999999999999998  7765444443                                      


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                                                        ++|+++||.+++.+|++++...          .+++++++.|...+
T Consensus       197 ----------------------------------~~la~~~~~a~~~~K~~l~~~~----------~~l~~~l~~e~~~~  232 (266)
T 3fdu_A          197 ----------------------------------QHLTALPLASLKQTKALMKHDL----------DQIIECIDHEAEIF  232 (266)
T ss_dssp             ----------------------------------HHHHTSCHHHHHHHHHHHTTTH----------HHHHHHHHHHHHHH
T ss_pred             ----------------------------------HHHHhCCHHHHHHHHHHHHhhh----------ccHHHHHHHHHHHH
Confidence                                              3599999999999999999754          35899999999999


Q ss_pred             HHhCCCchHHHHHHhhHhCCCCCCCCCc
Q 015014          385 LRSSLRSDFAEGVRAVLVDKDQVLSQLK  412 (414)
Q Consensus       385 ~~~~~~~D~~eGv~afl~dk~~~P~~~~  412 (414)
                      ..++.++|++||++||+  ++|+|+|++
T Consensus       233 ~~~~~s~d~~eg~~aF~--ekR~p~~~~  258 (266)
T 3fdu_A          233 MQRVQSPEMLEAVQAFM--QKRQPDFSQ  258 (266)
T ss_dssp             HHHHTCHHHHHHHHHHC-----------
T ss_pred             HHHhCCHHHHHHHHHHH--cCCCCCCCC
Confidence            99999999999999999  788898854

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.4e-56  Score=429.92  Aligned_cols=255  Identities=22%  Similarity=0.284  Sum_probs=226.9

Q ss_pred             CCCccEEEEEecCc-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhC
Q 015014           63 GAEEFVKGNVHPNG-VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (414)
Q Consensus        63 ~~~~~v~~~~~~~~-V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~  141 (414)
                      |+++.|.++. +++ |++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....   
T Consensus         6 m~~~~i~~~~-~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---   80 (263)
T 3moy_A            6 TTYTTIATSR-PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSE-RAFAAGADIAEMVTLT---   80 (263)
T ss_dssp             CCCSSEEEEC-CSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SEEEESBCHHHHTTCC---
T ss_pred             CCCCeEEEEE-eCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeeCCcChHHHhccC---
Confidence            4567898987 565 999999999999999999999999999999999999999999975 9999999999875421   


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCC
Q 015014          142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP  221 (414)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~  221 (414)
                          ....+......++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus        81 ----~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v  156 (263)
T 3moy_A           81 ----PHQARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAV  156 (263)
T ss_dssp             ----HHHHHHTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHH
T ss_pred             ----chhHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHh
Confidence                1111222233567789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHH
Q 015014          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ  301 (414)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  301 (414)
                      |.. ++++|++||+.++ |+||+++||||+|||++++.+.+.++++                                  
T Consensus       157 G~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~----------------------------------  200 (263)
T 3moy_A          157 GKA-KAMDLCLTGRSLT-AEEAERVGLVSRIVPAADLLDEALAVAQ----------------------------------  200 (263)
T ss_dssp             CHH-HHHHHHHHCCEEE-HHHHHHTTSCSEEECGGGHHHHHHHHHH----------------------------------
T ss_pred             CHH-HHHHHHHcCCCCC-HHHHHHCCCccEecCchHHHHHHHHHHH----------------------------------
Confidence            998 9999999999999 9999999999999999888665544433                                  


Q ss_pred             HHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHH
Q 015014          302 ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEY  381 (414)
Q Consensus       302 i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~  381 (414)
                                                            +|+++||.+++.+|+++++..         ..+++++++.|.
T Consensus       201 --------------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~l~~e~  233 (263)
T 3moy_A          201 --------------------------------------RIARMSRPAGRAVKDAINEAF---------ERPLSAGMRYER  233 (263)
T ss_dssp             --------------------------------------HHHHSCHHHHHHHHHHHHHTT---------TSCHHHHHHHHH
T ss_pred             --------------------------------------HHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHH
Confidence                                                  489999999999999999876         568999999999


Q ss_pred             HHHHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          382 RVALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       382 ~~~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      +.+..++.++|++|||+||+  ++|+|+|-
T Consensus       234 ~~~~~~~~s~d~~eg~~AF~--ekR~p~f~  261 (263)
T 3moy_A          234 DAFYAMFDTHDQTEGMTAFL--EKRTPEFT  261 (263)
T ss_dssp             HHHHHHTTSHHHHHHHHHHH--TTSCCCCC
T ss_pred             HHHHHHhCCHHHHHHHHHHH--hCCCCCCC
Confidence            99999999999999999999  67888874

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=5e-57  Score=435.36  Aligned_cols=255  Identities=20%  Similarity=0.235  Sum_probs=228.2

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      |+++.|.++. +++|++||||||+++|+||.+|+.+|.++++.+  |+++|+|||+|.| ++||+|+|++++...     
T Consensus        13 m~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g-~~F~aG~Dl~~~~~~-----   83 (275)
T 3hin_A           13 ADPSTLVVDT-VGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIG-DHFSAGLDLSELRER-----   83 (275)
T ss_dssp             CCGGGEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESS-SCSBCCBCGGGCCCC-----
T ss_pred             CCCCeEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCC-CCccCCCCHHHHhcc-----
Confidence            5678899987 799999999999999999999999999999998  5789999999998 899999999987531     


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                      .......+....+.++.+|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG  163 (275)
T 3hin_A           84 DATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIG  163 (275)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHC
T ss_pred             ChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhC
Confidence            11111224445567888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++                                   
T Consensus       164 ~~-~A~~l~ltG~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~-----------------------------------  206 (275)
T 3hin_A          164 VA-RMADMMLTGRVYS-AAEGVVHGFSQYLIENGSAYDKALELGN-----------------------------------  206 (275)
T ss_dssp             HH-HHHHHHHHCCCEE-HHHHHHHTSCSEEESSSCHHHHHHHHHH-----------------------------------
T ss_pred             HH-HHHHHHHcCCCCC-HHHHHHCCCCCEEeChhHHHHHHHHHHH-----------------------------------
Confidence            98 9999999999999 9999999999999999998765555443                                   


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                                                           +|+++||.+++.+|+++++..         ..+++++++.|..
T Consensus       207 -------------------------------------~ia~~~p~a~~~~K~~l~~~~---------~~~~~~~l~~e~~  240 (275)
T 3hin_A          207 -------------------------------------RVAQNAPLTNFAVLQALPMIA---------EANPQTGLLMESL  240 (275)
T ss_dssp             -------------------------------------HHTTSCHHHHHHHHTHHHHHH---------HSCHHHHHHHHHH
T ss_pred             -------------------------------------HHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHH
Confidence                                                 499999999999999999887         5689999999999


Q ss_pred             HHHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          383 VALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       383 ~~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      .+..++.++|++||++||+  ++|+|+|.
T Consensus       241 ~~~~~~~s~d~~eg~~AF~--ekR~p~f~  267 (275)
T 3hin_A          241 MATVAQSDQEAKTRIRAFL--DHKTAKVR  267 (275)
T ss_dssp             HHHHHHHSHHHHHHHHHHH--HHHHHHC-
T ss_pred             HHHHHhCCHHHHHHHHHHH--cCCCCCCC
Confidence            9999999999999999999  67778774

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=3.8e-56  Score=426.99  Aligned_cols=260  Identities=17%  Similarity=0.245  Sum_probs=224.9

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCc-cCCCChhhHHHHhhhC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF-CAGMDIKGVVAEIQKD  141 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~F-caG~Dl~~~~~~~~~~  141 (414)
                      |++++|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++| |+|+|++++..... .
T Consensus         1 Ms~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FF~aG~Dl~~~~~~~~-~   77 (263)
T 3lke_A            1 MSLSYVHTEI-QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKH-RAYFSSGPRLEDLLICAS-D   77 (263)
T ss_dssp             --CCSEEEEE-CSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESC-TTEEECBSCHHHHHHHHH-C
T ss_pred             CCCcEEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCC-CceEecCcCHHHHHhhcc-c
Confidence            4567899987 899999999999999999999999999999999999999999999998 788 99999999876211 1


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCC
Q 015014          142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP  221 (414)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~  221 (414)
                      ........+....+.++.++.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~v  157 (263)
T 3lke_A           78 QSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRII  157 (263)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHh
Confidence            12223344566677888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCcHHHHHHcCccceecC-CCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHH
Q 015014          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP-SGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP  300 (414)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~-~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  300 (414)
                      |.. ++++|++||+.++ |+||+++||||+||| ++++.+.+.+++                                  
T Consensus       158 G~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~~l~~~a~~~a----------------------------------  201 (263)
T 3lke_A          158 GYE-QTMNLLLEGKLFT-SEEALRLGLIQEICENKQELQERVKNYL----------------------------------  201 (263)
T ss_dssp             CHH-HHHHHHHHCCCEE-HHHHHHHTSSSEEESSHHHHHHHHHHHH----------------------------------
T ss_pred             CHH-HHHHHHHhCCCcC-HHHHHHcCCCcEecCChhHHHHHHHHHH----------------------------------
Confidence            998 9999999999999 999999999999999 777765544443                                  


Q ss_pred             HHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHH
Q 015014          301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE  380 (414)
Q Consensus       301 ~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e  380 (414)
                                                            ++|++.||.+++.+|++++...         ..+++++++.|
T Consensus       202 --------------------------------------~~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e  234 (263)
T 3lke_A          202 --------------------------------------KAVSEGYVPAIAATKKLLKGKA---------AEELKQQLEQE  234 (263)
T ss_dssp             --------------------------------------HHHHTSCHHHHHHHHHHHHTTH---------HHHHHHHHHHH
T ss_pred             --------------------------------------HHHHhCCHHHHHHHHHHHHHhh---------hcCHHHHHHHH
Confidence                                                  3599999999999999999876         45799999999


Q ss_pred             HHHHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          381 YRVALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       381 ~~~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .+.+..++.++|++||+++|+  |+++|.|
T Consensus       235 ~~~~~~~~~s~d~~e~~~~~~--~~~~~~~  262 (263)
T 3lke_A          235 TEELVALFKQTEIKKRLEALV--EGHHHHH  262 (263)
T ss_dssp             HHHHHHHTTSHHHHHHHHHC----------
T ss_pred             HHHHHHHhcCHHHHHHHHhhh--ccCCCCC
Confidence            999999999999999999999  6666655

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=2e-55  Score=427.50  Aligned_cols=260  Identities=21%  Similarity=0.277  Sum_probs=224.4

Q ss_pred             ccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC--
Q 015014           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN--  143 (414)
Q Consensus        66 ~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~--  143 (414)
                      ..|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.........  
T Consensus        24 ~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~~~~~  101 (290)
T 3sll_A           24 FVLVDRP-RPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAG-KGFCSGADQKSAGPIPHIGGLTQ  101 (290)
T ss_dssp             CEEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCC------CCCSSCTTCCH
T ss_pred             eEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCC-CCeeCCcChHHHhcccccccccc
Confidence            4577776 799999999999999999999999999999999999999999999998 899999999987642110000  


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCC-hhHHHHHhhCCC
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD-VGFSYIAAKGPG  222 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~-~g~~~~L~r~~G  222 (414)
                      ......+....+.++.+|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|+ +|++++|++++|
T Consensus       102 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~vG  181 (290)
T 3sll_A          102 PTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIG  181 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHhC
Confidence            0012335556677888999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++                                   
T Consensus       182 ~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~a~-----------------------------------  224 (290)
T 3sll_A          182 TS-RASDIMLTGRDVD-ADEAERIGLVSRKVASESLLEECYAIGE-----------------------------------  224 (290)
T ss_dssp             HH-HHHHHHHHCCCEE-HHHHHHHTSSSEEECGGGHHHHHHHHHH-----------------------------------
T ss_pred             HH-HHHHHHHcCCCCC-HHHHHHCCCccEEeChhHHHHHHHHHHH-----------------------------------
Confidence            98 9999999999999 9999999999999999988765544443                                   


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCccc-CCHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNEL-SKLSGVMKYEY  381 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~-~~l~~~l~~e~  381 (414)
                                                           +|++.||.+++.+|++++...         . .+++++++.|.
T Consensus       225 -------------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~~l~~~l~~e~  258 (290)
T 3sll_A          225 -------------------------------------RIAGFSRPGIELTKRTIWSGL---------DAASLESHMHQEG  258 (290)
T ss_dssp             -------------------------------------HHHHSCHHHHHHHHHHHHHHH---------TCSCHHHHHHHHH
T ss_pred             -------------------------------------HHHcCCHHHHHHHHHHHHhhc---------ccCCHHHHHHHHH
Confidence                                                 499999999999999999987         5 68999999999


Q ss_pred             HHHHHhC-CCchHHHHHHhhHhCCCCCCCCCc
Q 015014          382 RVALRSS-LRSDFAEGVRAVLVDKDQVLSQLK  412 (414)
Q Consensus       382 ~~~~~~~-~~~D~~eGv~afl~dk~~~P~~~~  412 (414)
                      ..+..++ .++|++|||+||+  ++|+|+|-.
T Consensus       259 ~~~~~~~~~s~d~~eg~~AFl--ekR~P~f~g  288 (290)
T 3sll_A          259 LGQLYVRLLTDNFEEATAARK--EKRPAEFRD  288 (290)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHH--TTSCCCCCS
T ss_pred             HHHHHHHhcCHHHHHHHHHHH--cCCCCCCCC
Confidence            9999999 9999999999999  678888753

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=2.5e-55  Score=425.93  Aligned_cols=256  Identities=21%  Similarity=0.270  Sum_probs=229.4

Q ss_pred             CCCccEEEEEec--CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhh
Q 015014           63 GAEEFVKGNVHP--NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQK  140 (414)
Q Consensus        63 ~~~~~v~~~~~~--~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~  140 (414)
                      |+++ |.++. +  ++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..    
T Consensus        22 m~~~-v~~~~-~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~----   94 (286)
T 3myb_A           22 MSEP-LLLQD-RDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASG-KAFCAGHDLKEMRA----   94 (286)
T ss_dssp             --CC-SEEEE-ECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECS-SCSBCCBCHHHHHS----
T ss_pred             Ccee-EEEEE-ecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCccCCcChhhhhc----
Confidence            4555 77876 6  89999999999999999999999999999999999999999999998 99999999998864    


Q ss_pred             CCCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhC
Q 015014          141 DRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG  220 (414)
Q Consensus       141 ~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~  220 (414)
                      .........++...+.++.+|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++ ++|++++|+|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~  173 (286)
T 3myb_A           95 EPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRN  173 (286)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHH
Confidence            11112233456667788899999999999999999999999999999999999999999999999999 78999999999


Q ss_pred             CCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHH
Q 015014          221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP  300 (414)
Q Consensus       221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  300 (414)
                      +|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++                                 
T Consensus       174 vG~~-~A~~llltG~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~---------------------------------  218 (286)
T 3myb_A          174 VGRK-AAFEMLVTGEFVS-ADDAKGLGLVNRVVAPKALDDEIEAMVS---------------------------------  218 (286)
T ss_dssp             SCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHHHHHH---------------------------------
T ss_pred             cCHH-HHHHHHHcCCCCC-HHHHHHCCCCcEecCHHHHHHHHHHHHH---------------------------------
Confidence            9998 9999999999999 9999999999999999988765555443                                 


Q ss_pred             HHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHH
Q 015014          301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE  380 (414)
Q Consensus       301 ~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e  380 (414)
                                                             +|++.||.+++.+|+++++..         ..+++++++.|
T Consensus       219 ---------------------------------------~la~~~p~a~~~~K~~l~~~~---------~~~l~~~l~~e  250 (286)
T 3myb_A          219 ---------------------------------------KIVAKPRAAVAMGKALFYRQI---------ETDIESAYADA  250 (286)
T ss_dssp             ---------------------------------------HHHHSCHHHHHHHHHHHHHHH---------TSCHHHHHHHH
T ss_pred             ---------------------------------------HHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHH
Confidence                                                   489999999999999999987         56899999999


Q ss_pred             HHHHHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          381 YRVALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       381 ~~~~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      .+.+..++.++|++|||++|+  ++|+|+|-
T Consensus       251 ~~~~~~~~~s~d~~egi~aFl--ekr~p~f~  279 (286)
T 3myb_A          251 GTTMACNMMDPSALEGVSAFL--EKRRPEWH  279 (286)
T ss_dssp             HHHHHHHHHSHHHHHHHHHHH--TTSCCCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHH--ccCCCCCC
Confidence            999999999999999999999  67888874

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=3.6e-55  Score=418.94  Aligned_cols=251  Identities=25%  Similarity=0.425  Sum_probs=220.7

Q ss_pred             ccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCC
Q 015014           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (414)
Q Consensus        66 ~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (414)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....      .
T Consensus         3 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~------~   74 (257)
T 2ej5_A            3 ETIRYEV-KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAG-RAFCAGEDLSGVTEEM------D   74 (257)
T ss_dssp             SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCC-------------C
T ss_pred             CceEEEe-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCCcCHHHHhhcc------c
Confidence            4577876 789999999999999999999999999999999999999999999997 8999999999875421      0


Q ss_pred             chHHHHH-HHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          146 LVPKVFT-AEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       146 ~~~~~~~-~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                       ...+.. ..+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.+
T Consensus        75 -~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  153 (257)
T 2ej5_A           75 -HGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRA  153 (257)
T ss_dssp             -HHHHHHHTHHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHH
T ss_pred             -hhHHHHHHHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHH
Confidence             111111 245677889999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       ++++|++||+.|+ |+||+++||||+|+|++++.+.+.++++                                     
T Consensus       154 -~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~-------------------------------------  194 (257)
T 2ej5_A          154 -KALELAVLGEKVT-AEEAAALGLATKVIPLSDWEEEVKQFAE-------------------------------------  194 (257)
T ss_dssp             -HHHHHHHHCCCEE-HHHHHHHTCCSEEECGGGHHHHHHHHHH-------------------------------------
T ss_pred             -HHHHHHHhCCccC-HHHHHHcCCcceecChhHHHHHHHHHHH-------------------------------------
Confidence             9999999999999 9999999999999999888665544433                                     


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                                                         +|++.||.+++.+|+++++..         ..+++++++.|.+.+
T Consensus       195 -----------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~~~~~l~~e~~~~  230 (257)
T 2ej5_A          195 -----------------------------------RLSAMPTKAIGLIKRLLRESE---------ETTFDRYLEREAECQ  230 (257)
T ss_dssp             -----------------------------------HHHTSCHHHHHHHHHHHHHHH---------HSCHHHHHHHHHHHH
T ss_pred             -----------------------------------HHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHH
Confidence                                               489999999999999999877         568999999999999


Q ss_pred             HHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          385 LRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       385 ~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ..++.++|++||+++|+  ++|+|+|
T Consensus       231 ~~~~~s~d~~eg~~af~--ekr~p~~  254 (257)
T 2ej5_A          231 RIAGLTSDHREGVKAFF--EKRKPLF  254 (257)
T ss_dssp             HHHHHSHHHHHHHHHHT--TTCCCCC
T ss_pred             HHHhCChHHHHHHHHHh--cCCCCCC
Confidence            99999999999999999  6677876

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=1.1e-56  Score=435.43  Aligned_cols=256  Identities=15%  Similarity=0.103  Sum_probs=222.9

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhh---
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQ---  139 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~---  139 (414)
                      ..++.|.++. +++|++||||||+ +|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.....   
T Consensus         6 ~~~~~i~~~~-~~~va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~   83 (287)
T 3gkb_A            6 DAYSTLRVSS-EHGVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQE   83 (287)
T ss_dssp             -CCSSEEEEE-ETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHH
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccch
Confidence            3577899987 7999999999999 7999999999999999999999999999999998789999999998763210   


Q ss_pred             -hCCCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcC-CeeEecccccCCCCCChhHHHHH
Q 015014          140 -KDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE-KTLLAMPENGIGLFPDVGFSYIA  217 (414)
Q Consensus       140 -~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~-~a~f~~pe~~~Gl~P~~g~~~~L  217 (414)
                       ......    ++...+.++..|.++||||||+|||+|+|||++|+++||||||++ +++|++||+++|++|++|++++|
T Consensus        84 ~~~~~~~----~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L  159 (287)
T 3gkb_A           84 LAASAPA----DVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYL  159 (287)
T ss_dssp             HHHTSCT----TCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHH
T ss_pred             hhHHHHH----HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHH
Confidence             000011    112234577789999999999999999999999999999999999 99999999999999999999999


Q ss_pred             hhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhh
Q 015014          218 AKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKL  297 (414)
Q Consensus       218 ~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  297 (414)
                      +|++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++                              
T Consensus       160 ~r~vG~~-~A~ellltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~lA~------------------------------  207 (287)
T 3gkb_A          160 RGRVGRN-RALEVVLTADLFD-AETAASYGWINRALPADELDEYVDRVAR------------------------------  207 (287)
T ss_dssp             HHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSSSEEECHHHHHHHHHHHHH------------------------------
T ss_pred             HHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCCcEEeChhHHHHHHHHHHH------------------------------
Confidence            9999998 9999999999999 9999999999999998877655544433                              


Q ss_pred             hHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHH
Q 015014          298 LLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVM  377 (414)
Q Consensus       298 ~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l  377 (414)
                                                                +|+++||.+++.+|++++..            .+.+++
T Consensus       208 ------------------------------------------~la~~~p~a~~~~K~~l~~~------------~~~~~l  233 (287)
T 3gkb_A          208 ------------------------------------------NIAALPDGVIEAAKRSLPAD------------DLKEGL  233 (287)
T ss_dssp             ------------------------------------------HHHTSCTTHHHHHHHHSCCC------------CCHHHH
T ss_pred             ------------------------------------------HHHcCCHHHHHHHHHHHHcc------------CHHHHH
Confidence                                                      49999999999999999863            246899


Q ss_pred             HHHHHHHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          378 KYEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       378 ~~e~~~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +.|...+..++.++|++|||+||+.+++++|.|
T Consensus       234 ~~e~~~~~~~~~s~d~~eg~~AF~ekr~~~P~f  266 (287)
T 3gkb_A          234 LGENDAWAATFSLPAAQQLISGGLKDGAQTPAG  266 (287)
T ss_dssp             HHHHHHHHHHHTSHHHHHHHHHHHHTTTTSHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCch
Confidence            999999999999999999999999766667855

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=3.5e-56  Score=427.70  Aligned_cols=255  Identities=21%  Similarity=0.226  Sum_probs=225.1

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| +.||+|+|++++....... ..
T Consensus         8 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~~   84 (265)
T 3swx_A            8 YETLRIRR-DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEG-PLFTAGLDLASVAAEIQGG-AS   84 (265)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCHHHHHHHHC---CC
T ss_pred             CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCcccCcChHHHhhcccch-hH
Confidence            67788887 799999999999999999999999999999999999999999999998 6799999999987643211 11


Q ss_pred             CchHHHHHHHHHHHHHH-hhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          145 PLVPKVFTAEYSLICKI-SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l-~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      ....    .....+..+ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus        85 ~~~~----~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~  160 (265)
T 3swx_A           85 LTPE----GGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGW  160 (265)
T ss_dssp             CCCT----TCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCH
T ss_pred             HHHH----HHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhH
Confidence            1111    111233467 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|++||+.++ |+||+++||||+|||++++.+.+.++++                                    
T Consensus       161 ~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~------------------------------------  202 (265)
T 3swx_A          161 G-NAMRWMLTADTFD-AVEAHRIGIVQEIVPVGEHVDTAIAIAQ------------------------------------  202 (265)
T ss_dssp             H-HHHHHHTTCCCEE-HHHHHHTTSCSEEESTTCHHHHHHHHHH------------------------------------
T ss_pred             H-HHHHHHHcCCcCC-HHHHHHcCCCCEecChhHHHHHHHHHHH------------------------------------
Confidence            8 9999999999999 9999999999999999998765554443                                    


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                          +|++.||.+++.+|+++++..         ..+++++++.|.+.
T Consensus       203 ------------------------------------~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~  237 (265)
T 3swx_A          203 ------------------------------------TIARQAPLGVQATLRNARLAV---------REGDAAAEEQLVPT  237 (265)
T ss_dssp             ------------------------------------HHHHSCHHHHHHHHHHHHHHH---------HHCHHHHHHHHHHH
T ss_pred             ------------------------------------HHHcCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHH
Confidence                                                489999999999999999887         56899999999999


Q ss_pred             HHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          384 ALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      +..++.++|++|||+||+  ++|+|+|-
T Consensus       238 ~~~~~~s~d~~eg~~af~--ekr~p~f~  263 (265)
T 3swx_A          238 VRELFTSEDATLGVQAFL--SRTTAEFV  263 (265)
T ss_dssp             HHHHHTSHHHHHHHHHHH--TTCCCCCC
T ss_pred             HHHHhCCHHHHHHHHHHh--cCCCCCCC
Confidence            999999999999999999  67888763

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=2.8e-55  Score=421.48  Aligned_cols=252  Identities=18%  Similarity=0.243  Sum_probs=219.2

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++ ...   .   .
T Consensus         8 ~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~-~~~---~---~   78 (265)
T 3rsi_A            8 ARELLVER-DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAG-SAYCVGGDLS-DGW---M---V   78 (265)
T ss_dssp             -CCEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSEECC---------------
T ss_pred             CCcEEEEE-ECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcCCC-ccc---c---c
Confidence            67788887 799999999999999999999999999999999999999999999998 8999999998 221   1   0


Q ss_pred             CchHHHHHHHHH-HHHHH-h--hCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhC
Q 015014          145 PLVPKVFTAEYS-LICKI-S--EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG  220 (414)
Q Consensus       145 ~~~~~~~~~~~~-l~~~l-~--~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~  220 (414)
                      . ...+...... ++..+ .  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus        79 ~-~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~  157 (265)
T 3rsi_A           79 R-DGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQ  157 (265)
T ss_dssp             -------CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHH
T ss_pred             c-hHHHHHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHH
Confidence            1 1112222234 66778 8  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHH
Q 015014          221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP  300 (414)
Q Consensus       221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  300 (414)
                      +|.. ++++|++||+.++ |+||+++||||+|||++++.+.+.++++                                 
T Consensus       158 vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~---------------------------------  202 (265)
T 3rsi_A          158 IPYT-KAMEMILTGEPLT-AFEAYHFGLVGHVVPAGTALDKARSLAD---------------------------------  202 (265)
T ss_dssp             SCHH-HHHHHHHHCCCEE-HHHHHHTTSCSEEESTTCHHHHHHHHHH---------------------------------
T ss_pred             hCHH-HHHHHHHcCCCCC-HHHHHHCCCccEecChhHHHHHHHHHHH---------------------------------
Confidence            9998 9999999999999 9999999999999999998765555443                                 


Q ss_pred             HHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHH
Q 015014          301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE  380 (414)
Q Consensus       301 ~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e  380 (414)
                                                             +|++.||.+++.+|+++++..         ..+++++++.|
T Consensus       203 ---------------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e  234 (265)
T 3rsi_A          203 ---------------------------------------RIVRNGPLAVRNAKEAIVRSG---------WLAEEDARAIE  234 (265)
T ss_dssp             ---------------------------------------HHHTSCHHHHHHHHHHHHHHT---------TCCHHHHHHHH
T ss_pred             ---------------------------------------HHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHH
Confidence                                                   499999999999999999886         56899999999


Q ss_pred             HHHHHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          381 YRVALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       381 ~~~~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      .+.+..++.++|++|||+||+  ++|+|+|-
T Consensus       235 ~~~~~~~~~s~d~~eg~~af~--ekr~p~f~  263 (265)
T 3rsi_A          235 ARLTRPVITSADAREGLAAFK--EKREARFT  263 (265)
T ss_dssp             HHHHHHHHTSHHHHHHHHHHH--HTSCCCCC
T ss_pred             HHHHHHHhcCHHHHHHHHHHH--cCCCCCCC
Confidence            999999999999999999999  66788774

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=1.1e-55  Score=424.59  Aligned_cols=255  Identities=24%  Similarity=0.284  Sum_probs=221.8

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++......  ..
T Consensus         8 ~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~--~~   84 (267)
T 3r9t_A            8 APGALAER-RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENL--YH   84 (267)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCC--SC
T ss_pred             CCcEEEEE-ECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccch--hh
Confidence            46688887 7999999999999999999999999999999999999999999999986799999999998753211  11


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      .....+.   ...+ ...++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..
T Consensus        85 ~~~~~~~---~~~~-~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  160 (267)
T 3r9t_A           85 PDHPEWG---FAGY-VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRK  160 (267)
T ss_dssp             TTCGGGC---GGGT-TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHH
T ss_pred             HHHHhHH---HHHH-HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHH
Confidence            1100010   0111 22389999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++                                     
T Consensus       161 -~A~~l~ltg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~-------------------------------------  201 (267)
T 3r9t_A          161 -VAMRLLLTGEPLS-AAAARDWGLINEVVEAGSVLDAALALAS-------------------------------------  201 (267)
T ss_dssp             -HHHHHHHHCCCEE-HHHHHHHTSSSEEECTTCHHHHHHHHHH-------------------------------------
T ss_pred             -HHHHHHHcCCCCC-HHHHHHCCCccEEcChhHHHHHHHHHHH-------------------------------------
Confidence             9999999999999 9999999999999999998765555443                                     


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHH---HHHHHhhcCCCCcccCCHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKY---FSKVASAHGKTDNELSKLSGVMKYEY  381 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~---l~~~~~~~~~~~~~~~~l~~~l~~e~  381 (414)
                                                         +|+++||.+++.+|++   ++...         ..+++++++.|.
T Consensus       202 -----------------------------------~la~~~p~a~~~~K~~~~~l~~~~---------~~~l~~~l~~e~  237 (267)
T 3r9t_A          202 -----------------------------------AITVNAPLSVQASKRIAYGVDDGV---------VVGDEPGWDRTM  237 (267)
T ss_dssp             -----------------------------------HHHTSCHHHHHHHHHHHTTEETTE---------EGGGHHHHHHHH
T ss_pred             -----------------------------------HHHhCChHHHHHHHHHHHHHHHhh---------cCCHHHHHHHHH
Confidence                                               4999999999999999   88765         557999999999


Q ss_pred             HHHHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          382 RVALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       382 ~~~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      +.+..++.++|++||++||+  ++|+|+|-
T Consensus       238 ~~~~~~~~s~d~~eg~~AF~--ekR~P~f~  265 (267)
T 3r9t_A          238 REMRALLKSEDAKEGPRAFA--EKREPVWQ  265 (267)
T ss_dssp             HHHHHHTTSSHHHHHHHHHH--TTSCCCCC
T ss_pred             HHHHHHhCCHHHHHHHHHHH--cCCCCCCC
Confidence            99999999999999999999  67888763

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=1.2e-56  Score=437.36  Aligned_cols=263  Identities=21%  Similarity=0.258  Sum_probs=183.6

Q ss_pred             CCCccEEEEEecC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHH--hh
Q 015014           63 GAEEFVKGNVHPN-GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAE--IQ  139 (414)
Q Consensus        63 ~~~~~v~~~~~~~-~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~--~~  139 (414)
                      ..++.|.++. ++ +|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...  ..
T Consensus        26 ~~~~~v~~~~-~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~FcaG~Dl~~~~~~~~~~  103 (298)
T 3qre_A           26 DAQDAVLYEA-TPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRG-RGFCAGAYLGSADAAAGYD  103 (298)
T ss_dssp             --CCSEEEEE-CTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSEECC------------
T ss_pred             CCCCeEEEEE-eCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcCHHHHhhccccc
Confidence            3568899987 67 9999999999999999999999999999999999999999999998 899999999988641  10


Q ss_pred             hCCCC-CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHh
Q 015014          140 KDRNT-PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA  218 (414)
Q Consensus       140 ~~~~~-~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~  218 (414)
                      ..... .....+....+.++..+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~  183 (298)
T 3qre_A          104 KTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILP  183 (298)
T ss_dssp             -----------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHH
Confidence            00000 00111122223456688999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhh
Q 015014          219 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLL  298 (414)
Q Consensus       219 r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  298 (414)
                      |++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++                               
T Consensus       184 r~vG~~-~A~ellltg~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~A~-------------------------------  230 (298)
T 3qre_A          184 RLTSWA-VALDLLLSGRTFL-AEEAAQLGLVKEVVTPEQLMPRALEYAE-------------------------------  230 (298)
T ss_dssp             HHSCHH-HHHHHHHHCCEEE-HHHHHHTTSCSEEECGGGHHHHHHHHHH-------------------------------
T ss_pred             HhcCHH-HHHHHHHcCCCCC-HHHHHHcCCCeEecCHHHHHHHHHHHHH-------------------------------
Confidence            999998 9999999999999 9999999999999999988766555543                               


Q ss_pred             HHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHH
Q 015014          299 LPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKG-APFSLCLTQKYFSKVASAHGKTDNELSKLSGVM  377 (414)
Q Consensus       299 ~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~-sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l  377 (414)
                                                               +|+++ ||.+++.+|+++++..         ..++++.+
T Consensus       231 -----------------------------------------~la~~~~p~a~~~~K~~l~~~~---------~~~l~~~~  260 (298)
T 3qre_A          231 -----------------------------------------DIARYCSPSSMAVIKRQVYGDA---------TRDVVEAT  260 (298)
T ss_dssp             -----------------------------------------HHHHHSCHHHHHHHHHHHHGGG---------GC------
T ss_pred             -----------------------------------------HHHccCCHHHHHHHHHHHHhhh---------cCCHHHHH
Confidence                                                     48888 9999999999999876         56789999


Q ss_pred             HHHHHHHHHhCCCchHHHHHHhhHhCCCCCCCCCc
Q 015014          378 KYEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQLK  412 (414)
Q Consensus       378 ~~e~~~~~~~~~~~D~~eGv~afl~dk~~~P~~~~  412 (414)
                      +.|...+..++.++|++|||+||+  ++|+|+|-+
T Consensus       261 ~~e~~~~~~~~~s~d~~Egv~AF~--ekR~P~f~~  293 (298)
T 3qre_A          261 SHAEVLLREAMPRPDVIEGIVSFL--EKRPPQFPS  293 (298)
T ss_dssp             -----------------------------------
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHH--cCCCCCCCC
Confidence            999999999999999999999999  788898854

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=4.2e-55  Score=418.70  Aligned_cols=252  Identities=22%  Similarity=0.287  Sum_probs=223.7

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      +..|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....      
T Consensus         4 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~------   75 (258)
T 2pbp_A            4 FVSIAARQ-EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRG-RAFAAGADIQEMAKDD------   75 (258)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCCCHHHHHTCC------
T ss_pred             cceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhccc------
Confidence            45677776 789999999999999999999999999999999999999999999987 8999999999875311      


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      .....+.... .++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..
T Consensus        76 ~~~~~~~~~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  154 (258)
T 2pbp_A           76 PIRLEWLNQF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPK  154 (258)
T ss_dssp             HHHHHHHCTT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             chhHHHHHHH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHH
Confidence            0011122222 456788999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       ++++|++||+.++ |+||+++||||+|+|++++.+.+.++++                                     
T Consensus       155 -~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~-------------------------------------  195 (258)
T 2pbp_A          155 -RALEWLWTGARMS-AKEAEQLGIVNRVVSPELLMEETMRLAG-------------------------------------  195 (258)
T ss_dssp             -HHHHHHHHCCCEE-HHHHHHTTSCSEEECGGGHHHHHHHHHH-------------------------------------
T ss_pred             -HHHHHHHcCCccC-HHHHHHcCCcceeeChHHHHHHHHHHHH-------------------------------------
Confidence             9999999999999 9999999999999999888665544433                                     


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                                                         +|+++||.+++.+|++++...         ..+++++++.|.+.+
T Consensus       196 -----------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~~~~~l~~e~~~~  231 (258)
T 2pbp_A          196 -----------------------------------RLAEQPPLALRLIKEAVQKAV---------DYPLYEGMQFERKNF  231 (258)
T ss_dssp             -----------------------------------HHHTSCHHHHHHHHHHHHHHH---------HSCHHHHHHHHHHHH
T ss_pred             -----------------------------------HHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHH
Confidence                                               489999999999999999887         568999999999999


Q ss_pred             HHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          385 LRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       385 ~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ..++.++|++||+++|+  ++|+|+|
T Consensus       232 ~~~~~s~d~~eg~~af~--ekr~p~~  255 (258)
T 2pbp_A          232 YLLFASEDQKEGMAAFL--EKRKPRF  255 (258)
T ss_dssp             HHHTTSHHHHHHHHHHH--TTSCCCC
T ss_pred             HHHhCCHHHHHHHHHHH--ccCCCCC
Confidence            99999999999999999  6677876

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=6.4e-56  Score=427.95  Aligned_cols=257  Identities=23%  Similarity=0.262  Sum_probs=219.5

Q ss_pred             ccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhh--hC-C
Q 015014           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQ--KD-R  142 (414)
Q Consensus        66 ~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~--~~-~  142 (414)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.....  .+ .
T Consensus        11 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~   88 (274)
T 3tlf_A           11 DTIKYEV-DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTG-RAFCSGADVKEIPEDGKVIYERP   88 (274)
T ss_dssp             SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCBC--------------C
T ss_pred             CceEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCC-CCcccCcCHHHHhhccccccccc
Confidence            5688887 799999999999999999999999999999999999999999999998 89999999999865322  00 0


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                      ...... .+...+.++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++| +|++++|+|++|
T Consensus        89 ~~~~~~-~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG  166 (274)
T 3tlf_A           89 YLSTYD-QWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVLP  166 (274)
T ss_dssp             TTCSGG-GGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTSC
T ss_pred             hhhHHH-HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHhC
Confidence            011111 222223456678899999999999999999999999999999999999999999999999 999999999999


Q ss_pred             cHHHHHHHHhcCC--CCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHH
Q 015014          223 GGSVGAYLGMTGK--RISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP  300 (414)
Q Consensus       223 ~~~~a~~l~ltG~--~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  300 (414)
                      .. ++++|++||+  .|+ |+||+++||||+|+|++++.+.+.+++                                  
T Consensus       167 ~~-~A~~l~ltg~~~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a----------------------------------  210 (274)
T 3tlf_A          167 RS-IALRMALMGKHERMS-AQRAYELGLISEIVEHDRLLERAHEIA----------------------------------  210 (274)
T ss_dssp             HH-HHHHHHHHGGGCCEE-HHHHHHHTSSSEEECGGGHHHHHHHHH----------------------------------
T ss_pred             HH-HHHHHHHcCCCCccC-HHHHHHCCCCCeecCHHHHHHHHHHHH----------------------------------
Confidence            98 9999999999  999 999999999999999988866554443                                  


Q ss_pred             HHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHH
Q 015014          301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE  380 (414)
Q Consensus       301 ~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e  380 (414)
                                                            ++|+++||.+++.+|++++...         ..+++++++.|
T Consensus       211 --------------------------------------~~la~~~~~a~~~~K~~l~~~~---------~~~l~~~l~~e  243 (274)
T 3tlf_A          211 --------------------------------------DIVNSNAPLAVRGTRLAILKGL---------NVPLHEAEILA  243 (274)
T ss_dssp             --------------------------------------HHHHTSCHHHHHHHHHHHHHHT---------TSCHHHHHHHH
T ss_pred             --------------------------------------HHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHH
Confidence                                                  3599999999999999999887         56899999999


Q ss_pred             HHHHHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          381 YRVALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       381 ~~~~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      .+.+..++.++|++|||+||+  ++|+|+|-
T Consensus       244 ~~~~~~~~~s~d~~eg~~af~--ekr~p~f~  272 (274)
T 3tlf_A          244 ETFRERVLRTEDAAEGPRAFV--EKRQPNWQ  272 (274)
T ss_dssp             HHHHHHHHTSHHHHHHHHHHH--TTSCCCCC
T ss_pred             HHHHHHHhcCHHHHHHHHHHh--cCCCCCCC
Confidence            999999999999999999999  66888774

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=1.9e-55  Score=425.39  Aligned_cols=256  Identities=21%  Similarity=0.268  Sum_probs=213.9

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      ..+.|.++. +++|++||||||+++|+||.+|+.+|.++++.+++|+++|+|||+|.| ++||+|+|++++......   
T Consensus        18 ~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~---   92 (278)
T 4f47_A           18 SGPDALVEQ-RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAG-GYFCAGMDLKAATKKPPG---   92 (278)
T ss_dssp             -CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCCC-----------------
T ss_pred             CCCceEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CcccCCcChHhhhccchh---
Confidence            346788887 799999999999999999999999999999999999999999999998 899999999988653211   


Q ss_pred             CCchHHHHHHHHHHHHHHh---hCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhC
Q 015014          144 TPLVPKVFTAEYSLICKIS---EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG  220 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~---~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~  220 (414)
                       .... .......++..+.   ++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+++
T Consensus        93 -~~~~-~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~  170 (278)
T 4f47_A           93 -DSFK-DGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQ  170 (278)
T ss_dssp             ----------CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHH
T ss_pred             -hhHH-HHHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHH
Confidence             1000 0001112334555   8999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHH
Q 015014          221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP  300 (414)
Q Consensus       221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  300 (414)
                      +|.. ++++|++||+.|+ |+||+++||||+|+|++++.+.+.++++                                 
T Consensus       171 vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~---------------------------------  215 (278)
T 4f47_A          171 IPYT-VACDLLLTGRHIT-AAEAKEMGLVGHVVPDGQALTKALEIAE---------------------------------  215 (278)
T ss_dssp             SCHH-HHHHHHHHCCCEE-HHHHHHTTSCSEEECTTCHHHHHHHHHH---------------------------------
T ss_pred             hCHH-HHHHHHHcCCcCC-HHHHHHCCCceEeeChhHHHHHHHHHHH---------------------------------
Confidence            9998 9999999999999 9999999999999999998765544443                                 


Q ss_pred             HHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHH
Q 015014          301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE  380 (414)
Q Consensus       301 ~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e  380 (414)
                                                             +|++.||.+++.+|+++++..         ..+++++++.|
T Consensus       216 ---------------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~l~~e  247 (278)
T 4f47_A          216 ---------------------------------------IIAANGPLAVQAILRTIRETE---------GMHENEAFKID  247 (278)
T ss_dssp             ---------------------------------------HHHHSCHHHHHHHHHHHHHTT---------TSCHHHHHHHH
T ss_pred             ---------------------------------------HHHhCCHHHHHHHHHHHHHhc---------cCCHHHHHHHH
Confidence                                                   499999999999999999876         56899999999


Q ss_pred             HHHHHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          381 YRVALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       381 ~~~~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      .+.+..++.++|++|||+||+  ++|+|+|-
T Consensus       248 ~~~~~~~~~s~d~~eg~~Af~--ekr~p~f~  276 (278)
T 4f47_A          248 TRIGIEVFLSDDAKEGPQAFA--QKRKPNFQ  276 (278)
T ss_dssp             HHHHGGGGGSSHHHHHHHHHH--TTSCCCCC
T ss_pred             HHHHHHHhcCHHHHHHHHHHh--cCCCCCCC
Confidence            999999999999999999999  77888874

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.3e-54  Score=416.95  Aligned_cols=254  Identities=20%  Similarity=0.283  Sum_probs=226.4

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-CCCCCccCCCChhhHHHHhhhCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEG-SGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g-~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      .++.+.++. +++|++|+|||| ++|+||.+|+.+|.++++.++.|+++|+|||+| .| ++||+|+|++++.. .    
T Consensus         7 ~~~~i~~~~-~~~v~~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g-~~F~aG~Dl~~~~~-~----   78 (265)
T 2ppy_A            7 KKQYLTVFK-EDGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVP-KFFSAGADINFLRS-A----   78 (265)
T ss_dssp             ECSSEEEEE-ETTEEEEEECSS-TTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECST-TEEECCBCHHHHTT-S----
T ss_pred             CCCeEEEEe-eCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCC-CeeeeCcCHHHHhc-c----
Confidence            356788886 799999999999 899999999999999999999999999999999 76 89999999998743 1    


Q ss_pred             CCCchHHHHHHH-HHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCe-eEecccccCCCCCChhHHHHHhhC
Q 015014          143 NTPLVPKVFTAE-YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT-LLAMPENGIGLFPDVGFSYIAAKG  220 (414)
Q Consensus       143 ~~~~~~~~~~~~-~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a-~f~~pe~~~Gl~P~~g~~~~L~r~  220 (414)
                       ......+.... +.++.+|.++||||||+|||+|+|||++|+++||||||++++ +|++||+++|++|++|++++|+++
T Consensus        79 -~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~  157 (265)
T 2ppy_A           79 -DPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARL  157 (265)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHH
Confidence             11112233344 567789999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             CCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHH
Q 015014          221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP  300 (414)
Q Consensus       221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  300 (414)
                      +|.. ++++|++||+.++ |+||+++||||+|+|++++.+.+.++++                                 
T Consensus       158 vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~---------------------------------  202 (265)
T 2ppy_A          158 IGYS-RALDMNITGETIT-PQEALEIGLVNRVFPQAETRERTREYAR---------------------------------  202 (265)
T ss_dssp             HCHH-HHHHHHHHCCCBC-HHHHHHHTSSSEEECGGGHHHHHHHHHH---------------------------------
T ss_pred             hCHH-HHHHHHHhCCccC-HHHHHHCCCcceecCHHHHHHHHHHHHH---------------------------------
Confidence            9998 9999999999999 9999999999999999888765544433                                 


Q ss_pred             HHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHH
Q 015014          301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE  380 (414)
Q Consensus       301 ~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e  380 (414)
                                                             +|++.||.+++.+|++++...         ..+++++++.|
T Consensus       203 ---------------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~~~~~l~~e  234 (265)
T 2ppy_A          203 ---------------------------------------KLANSATYAVSNIKLAIMNGK---------EMPLNVAIRYE  234 (265)
T ss_dssp             ---------------------------------------HHHTSCHHHHHHHHHHHHHHT---------TSCHHHHHHHH
T ss_pred             ---------------------------------------HHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHH
Confidence                                                   489999999999999999876         56899999999


Q ss_pred             HHHHHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          381 YRVALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       381 ~~~~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      .+.+..++.++|++|||++|+  ++|+|+|-
T Consensus       235 ~~~~~~~~~s~d~~egi~af~--ekr~p~~~  263 (265)
T 2ppy_A          235 GELQNLLFRSEDAKEGLSAFL--EKRQPNWK  263 (265)
T ss_dssp             HHHHHHHHTSHHHHHHHHHHH--TTSCCCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHH--cCCCCCCC
Confidence            999999999999999999999  66888874

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=3.5e-55  Score=423.07  Aligned_cols=261  Identities=23%  Similarity=0.278  Sum_probs=206.2

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      .++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....... .
T Consensus         7 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~-~   83 (276)
T 2j5i_A            7 RWKTVKVEI-EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEYFREVDAG-P   83 (276)
T ss_dssp             CCSSEEEEE-ETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEEST-TCSBCCBCHHHHHHHHHHS-C
T ss_pred             CCceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCCcCCcChhhHhhccccc-h
Confidence            466788887 789999999999999999999999999999999999999999999997 8999999999876432111 1


Q ss_pred             CCchHHHHHHHHHH-HHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          144 TPLVPKVFTAEYSL-ICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       144 ~~~~~~~~~~~~~l-~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                      ......+....+.+ +..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG  163 (276)
T 2j5i_A           84 EILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVG  163 (276)
T ss_dssp             TTHHHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhC
Confidence            11122222223333 56788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .+ ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++                                   
T Consensus       164 ~~-~A~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~-----------------------------------  206 (276)
T 2j5i_A          164 HR-QSLMYIMTGKTFG-GQKAAEMGLVNESVPLAQLREVTIELAR-----------------------------------  206 (276)
T ss_dssp             HH-HHHHHHHHCCEEE-HHHHHHHTSSSEEECHHHHHHHHHHHHH-----------------------------------
T ss_pred             HH-HHHHHHHhCCccc-HHHHHHcCCccEeeCHHHHHHHHHHHHH-----------------------------------
Confidence            98 9999999999999 9999999999999998877655544433                                   


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                                                           +|+++||.+++.+|+++++..         ..+++++++.|..
T Consensus       207 -------------------------------------~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~e~~  240 (276)
T 2j5i_A          207 -------------------------------------NLLEKNPVVLRAAKHGFKRCR---------ELTWEQNEDYLYA  240 (276)
T ss_dssp             -------------------------------------HHHTSCHHHHHHHHHHHHHHT---------TSCHHHHHHHHHH
T ss_pred             -------------------------------------HHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHH
Confidence                                                 499999999999999999876         5689999998888


Q ss_pred             HHHHh--CCCc-hHHHHHHhhHhCCCCCCCC
Q 015014          383 VALRS--SLRS-DFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       383 ~~~~~--~~~~-D~~eGv~afl~dk~~~P~~  410 (414)
                      .+...  +.++ |++||++||+.++.++|+|
T Consensus       241 ~~~~~~~~~s~~d~~eg~~AF~ekr~r~p~~  271 (276)
T 2j5i_A          241 KLDQSRLLDTEGGREQGMKQFLDDKSIKPGL  271 (276)
T ss_dssp             HHHHHHHHC----------------------
T ss_pred             HHHHHhhcCChHHHHHHHHHHHhcccCCCCc
Confidence            76654  6688 9999999999433357776

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=2.5e-55  Score=422.73  Aligned_cols=259  Identities=21%  Similarity=0.263  Sum_probs=225.5

Q ss_pred             ccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCC
Q 015014           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (414)
Q Consensus        66 ~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (414)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...........
T Consensus         3 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~   80 (269)
T 1nzy_A            3 EAIGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE-DAFCAGFYLREIPLDKGVAGVRD   80 (269)
T ss_dssp             SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGSCSSSHHHHHHH
T ss_pred             ceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCcccCcCHHHHhhcccccChHH
Confidence            3477776 789999999999999999999999999999999999999999999998 89999999998643100000000


Q ss_pred             chHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHH
Q 015014          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (414)
Q Consensus       146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~  225 (414)
                      ....+....+.++.++.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. 
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-  159 (269)
T 1nzy_A           81 HFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMR-  159 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHH-
Confidence            0022444456788899999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhh
Q 015014          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (414)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~  305 (414)
                      ++++|++||+.++ |+||+++||||+|+|++++.+.+.+++                                       
T Consensus       160 ~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a---------------------------------------  199 (269)
T 1nzy_A          160 RAMELMLTNRTLY-PEEAKDWGLVSRVYPKDEFREVAWKVA---------------------------------------  199 (269)
T ss_dssp             HHHHHHHHCCCBC-HHHHHHHTSCSCEECHHHHHHHHHHHH---------------------------------------
T ss_pred             HHHHHHHcCCCCC-HHHHHHCCCccEeeCHHHHHHHHHHHH---------------------------------------
Confidence            9999999999999 999999999999999877765444433                                       


Q ss_pred             cCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHH
Q 015014          306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL  385 (414)
Q Consensus       306 F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~  385 (414)
                                                       ++|+++||.+++.+|+++++..         ..+++++++.|.+.+.
T Consensus       200 ---------------------------------~~la~~~p~a~~~~K~~l~~~~---------~~~~~~~l~~e~~~~~  237 (269)
T 1nzy_A          200 ---------------------------------RELAAAPTHLQVMAKERFHAGW---------MQPVEECTEFEIQNVI  237 (269)
T ss_dssp             ---------------------------------HHHHHSCHHHHHHHHHHHHHHT---------TSCHHHHHHHHHHHHH
T ss_pred             ---------------------------------HHHHcCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHHHHH
Confidence                                             3489999999999999999876         5689999999999999


Q ss_pred             HhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          386 RSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       386 ~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      .++.++|++||+++|+  ++|+|+|-
T Consensus       238 ~~~~s~d~~egi~af~--ekr~p~f~  261 (269)
T 1nzy_A          238 ASVTHPHFMPCLTRFL--DGHRADRP  261 (269)
T ss_dssp             HHHHSTTHHHHHHHHH--TTCCTTCC
T ss_pred             HHhcCHHHHHHHHHHH--hcCCCCCC
Confidence            9999999999999999  66888873

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=7.2e-55  Score=418.71  Aligned_cols=255  Identities=18%  Similarity=0.221  Sum_probs=217.7

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      |+++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.| ++|+|||||.| ++||+|+|++++........
T Consensus         4 m~~~~i~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   80 (267)
T 3hp0_A            4 VTYQTIKVRF-QASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLP-EVFCFGADFQEIYQEMKRGR   80 (267)
T ss_dssp             -CCSSEEEEE-ETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCS-SCSBCCBCHHHHHHTTTTTC
T ss_pred             CCCceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCC-CceecCcCHHHHHhcccChH
Confidence            5577899987 799999999999999999999999999999999986 59999999997 89999999999876321111


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                      .   ...+....+.++.++.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++| +++|++++|
T Consensus        81 ~---~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG  156 (267)
T 3hp0_A           81 K---QASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIG  156 (267)
T ss_dssp             C---SCCCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHC
T ss_pred             H---HHHHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhC
Confidence            1   111233455678899999999999999999999999999999999999999999999999999886 678999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||+.|+ |+||+++||||+|||+.+.  .+.+                                      
T Consensus       157 ~~-~A~ellltg~~i~-A~eA~~~GLV~~vv~~~~~--~~~~--------------------------------------  194 (267)
T 3hp0_A          157 RQ-KAHYMTLMTKPIS-VQEASEWGLIDAFDAESDV--LLRK--------------------------------------  194 (267)
T ss_dssp             HH-HHHHHHHHCCCBC-HHHHHHHTSSSCBCSCTTH--HHHH--------------------------------------
T ss_pred             HH-HHHHHHHcCCCCC-HHHHHHCCCcceecCCHHH--HHHH--------------------------------------
Confidence            98 9999999999999 9999999999999986442  1222                                      


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                                                    +    +++|++.||.+++.+|++++...          ..+.+.++.|.+
T Consensus       195 ------------------------------~----a~~la~~~p~a~~~~K~~l~~~~----------~~~~~~~~~e~~  230 (267)
T 3hp0_A          195 ------------------------------H----LLRLRRLNKKGIAHYKQFMSSLD----------HQVSRAKATALT  230 (267)
T ss_dssp             ------------------------------H----HHHHTTSCHHHHHHHHHHHHHHC----------CHHHHHHHHHHH
T ss_pred             ------------------------------H----HHHHHhCCHHHHHHHHHHHHhcc----------cchHHHHHHHHH
Confidence                                          2    23599999999999999999854          347888889999


Q ss_pred             HHHHhCCCchHHHHHHhhHhCCCCCCCCCc
Q 015014          383 VALRSSLRSDFAEGVRAVLVDKDQVLSQLK  412 (414)
Q Consensus       383 ~~~~~~~~~D~~eGv~afl~dk~~~P~~~~  412 (414)
                      .+..++.++|++||++||+  ++|+|+|++
T Consensus       231 ~~~~~~~s~d~~Eg~~AF~--ekr~P~~~~  258 (267)
T 3hp0_A          231 ANQDMFSDPQNQMGIIRYV--ETGQFPWED  258 (267)
T ss_dssp             HHHHHTTSTTHHHHHHHHT--TSCCC----
T ss_pred             HHHHHhCCHHHHHHHHHHH--hcCCCCCCC
Confidence            9999999999999999999  889999865

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=6.2e-55  Score=423.37  Aligned_cols=254  Identities=20%  Similarity=0.253  Sum_probs=226.4

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      ...+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....    ..
T Consensus        32 ~~~v~~~~-~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~----~~  105 (287)
T 2vx2_A           32 PRPTSARQ-LDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEG-PVFSSGHDLKELTEEQ----GR  105 (287)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESS-SEEECCSCCC-CCGGG----CH
T ss_pred             CcceEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCccCCcCHHHHhccc----ch
Confidence            45688886 789999999999999999999999999999999999999999999997 8999999999875321    11


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      .....++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++ |++++|..
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~  184 (287)
T 2vx2_A          106 DYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRK  184 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHH
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHH
Confidence            11223445566788899999999999999999999999999999999999999999999999999999999 99999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++                                     
T Consensus       185 -~A~~llltg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~-------------------------------------  225 (287)
T 2vx2_A          185 -VALEMLFTGEPIS-AQEALLHGLLSKVVPEAELQEETMRIAR-------------------------------------  225 (287)
T ss_dssp             -HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHHHHHH-------------------------------------
T ss_pred             -HHHHHHHhCCCCC-HHHHHHCCCcceecCHHHHHHHHHHHHH-------------------------------------
Confidence             9999999999999 9999999999999999888765554443                                     


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                                                         +|+++||.+++.+|++++...         ..+++++++.|.+.+
T Consensus       226 -----------------------------------~la~~~p~a~~~~K~~l~~~~---------~~~l~~~l~~e~~~~  261 (287)
T 2vx2_A          226 -----------------------------------KIASLSRPVVSLGKATFYKQL---------PQDLGTAYYLTSQAM  261 (287)
T ss_dssp             -----------------------------------HHHTSCHHHHHHHHHHHHHHT---------TSCHHHHHHHHHHHH
T ss_pred             -----------------------------------HHHcCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHH
Confidence                                               489999999999999999876         568999999999999


Q ss_pred             HHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          385 LRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       385 ~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ..++.++|++|||++|+  ++|+|+|
T Consensus       262 ~~~~~s~d~~egi~af~--ekr~p~f  285 (287)
T 2vx2_A          262 VDNLALRDGQEGITAFL--QKRKPVW  285 (287)
T ss_dssp             HHHHTSHHHHHHHHHHH--TTSCCCC
T ss_pred             HHHhCCHHHHHHHHHHH--cCCCCCC
Confidence            99999999999999999  6778876

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=1.3e-55  Score=422.91  Aligned_cols=255  Identities=18%  Similarity=0.233  Sum_probs=223.4

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-CCCCCccCCCChhhHHHHhhhC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEG-SGPRAFCAGMDIKGVVAEIQKD  141 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g-~g~~~FcaG~Dl~~~~~~~~~~  141 (414)
                      |+|+.|.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+ +|+|||+| .|+++||+|+|++++..... .
T Consensus         1 m~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~-~   77 (261)
T 1ef8_A            1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGR-D   77 (261)
T ss_dssp             CCCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC------C
T ss_pred             CCcceEEEEE-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCc-h
Confidence            3467788887 7899999999999999999999999999999999999 99999999 87689999999998764211 1


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCC
Q 015014          142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP  221 (414)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~  221 (414)
                       ...    ++...+.++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++
T Consensus        78 -~~~----~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~v  152 (261)
T 1ef8_A           78 -PLS----YDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDA  152 (261)
T ss_dssp             -TTC----TTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSS
T ss_pred             -hHH----HHHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHh
Confidence             111    112345677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHH
Q 015014          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ  301 (414)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  301 (414)
                      |.+ ++++|++||+.++ |+||+++||||+|||++++.+.+.+++                                   
T Consensus       153 G~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a-----------------------------------  195 (261)
T 1ef8_A          153 GFH-IVKELIFTASPIT-AQRALAVGILNHVVEVEELEDFTLQMA-----------------------------------  195 (261)
T ss_dssp             CHH-HHHHHHHHCCCEE-HHHHHHTTSCSEEECHHHHHHHHHHHH-----------------------------------
T ss_pred             CHH-HHHHHHHcCCccC-HHHHHHCCCcccccCHHHHHHHHHHHH-----------------------------------
Confidence            998 9999999999999 999999999999999877765444443                                   


Q ss_pred             HHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHH
Q 015014          302 ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEY  381 (414)
Q Consensus       302 i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~  381 (414)
                                                           ++|++.||.+++.+|++++...         ..+++++++.|.
T Consensus       196 -------------------------------------~~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~  229 (261)
T 1ef8_A          196 -------------------------------------HHISEKAPLAIAVIKEELRVLG---------EAHTMNSDEFER  229 (261)
T ss_dssp             -------------------------------------HHHTTSCHHHHHHHHHHHHHHH---------HCCCCCHHHHHH
T ss_pred             -------------------------------------HHHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHH
Confidence                                                 3499999999999999999876         456888999999


Q ss_pred             HHHH--HhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          382 RVAL--RSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       382 ~~~~--~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +.+.  .++.++|++||+++|+  ++|+|+|
T Consensus       230 ~~~~~~~~~~s~d~~eg~~af~--ekr~p~~  258 (261)
T 1ef8_A          230 IQGMRRAVYDSEDYQEGMNAFL--EKRKPNF  258 (261)
T ss_dssp             HHHHHHHHHTSHHHHHHHHHHH--TTSCCCC
T ss_pred             HHhhHHHhhcCHHHHHHHHHHH--ccCCCCC
Confidence            9998  8899999999999999  6778876

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=3.6e-55  Score=425.28  Aligned_cols=263  Identities=17%  Similarity=0.157  Sum_probs=220.0

Q ss_pred             ccCCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhh
Q 015014           61 AAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQK  140 (414)
Q Consensus        61 ~~~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~  140 (414)
                      ..+.++.|.++...++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++......
T Consensus        22 ~~~~~~~v~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~  101 (289)
T 3t89_A           22 CSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGY  101 (289)
T ss_dssp             CCTTCSSEEEEEETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC--------
T ss_pred             cCCCCCeEEEEEecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccc
Confidence            34567889998733899999999999999999999999999999999999999999999986799999999987542110


Q ss_pred             CCCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhC
Q 015014          141 DRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG  220 (414)
Q Consensus       141 ~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~  220 (414)
                         .............++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+++
T Consensus       102 ---~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~  178 (289)
T 3t89_A          102 ---KDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARI  178 (289)
T ss_dssp             -----------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHH
T ss_pred             ---hhhhHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHh
Confidence               01111111223467778999999999999999999999999999999999999999999999988888889999999


Q ss_pred             CCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHH
Q 015014          221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP  300 (414)
Q Consensus       221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  300 (414)
                      +|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++                                 
T Consensus       179 vG~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~A~---------------------------------  223 (289)
T 3t89_A          179 VGQK-KAREIWFLCRQYD-AKQALDMGLVNTVVPLADLEKETVRWCR---------------------------------  223 (289)
T ss_dssp             HCHH-HHHHHHHHCCCEE-HHHHHHHTSSSEEECGGGHHHHHHHHHH---------------------------------
T ss_pred             cCHH-HHHHHHHcCCccc-HHHHHHCCCceEeeCHHHHHHHHHHHHH---------------------------------
Confidence            9998 9999999999999 9999999999999999988765555443                                 


Q ss_pred             HHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHH
Q 015014          301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE  380 (414)
Q Consensus       301 ~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e  380 (414)
                                                             +|+++||.+++.+|++++...         . ...+..+.|
T Consensus       224 ---------------------------------------~la~~~~~a~~~~K~~l~~~~---------~-~~~~~~~~e  254 (289)
T 3t89_A          224 ---------------------------------------EMLQNSPMALRCLKAALNADC---------D-GQAGLQELA  254 (289)
T ss_dssp             ---------------------------------------HHHTSCHHHHHHHHHHHHHTT---------S-HHHHHHHHH
T ss_pred             ---------------------------------------HHHcCCHHHHHHHHHHHHhhc---------c-cchHHHHHH
Confidence                                                   499999999999999999764         1 234445577


Q ss_pred             HHHHHHhCCCchHHHHHHhhHhCCCCCCCCCc
Q 015014          381 YRVALRSSLRSDFAEGVRAVLVDKDQVLSQLK  412 (414)
Q Consensus       381 ~~~~~~~~~~~D~~eGv~afl~dk~~~P~~~~  412 (414)
                      ...+..++.++|++|||+||+  ++|+|+|-+
T Consensus       255 ~~~~~~~~~s~d~~Eg~~AF~--ekR~P~f~~  284 (289)
T 3t89_A          255 GNATMLFYMTEEGQEGRNAFN--QKRQPDFSK  284 (289)
T ss_dssp             HHHHHHHTTSSTTTHHHHHHH--TTSCCCCTT
T ss_pred             HHHHHHHhcCHHHHHHHHHHh--cCCCCCCCC
Confidence            777778899999999999999  788898754

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=5.4e-55  Score=417.35  Aligned_cols=248  Identities=21%  Similarity=0.255  Sum_probs=221.0

Q ss_pred             ccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCC
Q 015014           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (414)
Q Consensus        66 ~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (414)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....    ...
T Consensus         7 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~----~~~   80 (256)
T 3trr_A            7 DEVLIEQ-RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAG-GNFCAGMDLKAFVSGE----AVL   80 (256)
T ss_dssp             CSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGG-GCCCCCBCHHHHHHTC----CCE
T ss_pred             CceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CceecCcCHHHhcccc----chh
Confidence            4588886 799999999999999999999999999999999999999999999998 8999999999987521    111


Q ss_pred             chHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHH
Q 015014          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (414)
Q Consensus       146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~  225 (414)
                      ....+     . +..+ .+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. 
T Consensus        81 ~~~~~-----~-~~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~-  152 (256)
T 3trr_A           81 SERGL-----G-FTNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQ-  152 (256)
T ss_dssp             ETTEE-----T-TSSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHH-
T ss_pred             hhhhh-----h-HHHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHH-
Confidence            10001     1 1234 89999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhh
Q 015014          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (414)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~  305 (414)
                      ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++                                      
T Consensus       153 ~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~--------------------------------------  193 (256)
T 3trr_A          153 VAMELALTGESFT-AEDAAKYGFINRLVDDGQALDTALELAA--------------------------------------  193 (256)
T ss_dssp             HHHHHHHHCCCEE-HHHHGGGTCCSEEECTTCHHHHHHHHHH--------------------------------------
T ss_pred             HHHHHHHhCCCcC-HHHHHHCCCeeEecChHHHHHHHHHHHH--------------------------------------
Confidence            9999999999999 9999999999999999998765544443                                      


Q ss_pred             cCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHH
Q 015014          306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL  385 (414)
Q Consensus       306 F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~  385 (414)
                                                        +|+++||.+++.+|+++++..         ..+++++++.|.+.+.
T Consensus       194 ----------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~l~~e~~~~~  230 (256)
T 3trr_A          194 ----------------------------------KITANGPLAVAATKRIIIESA---------SWAPEEAFAKQGEILM  230 (256)
T ss_dssp             ----------------------------------HHHTSCHHHHHHHHHHHHHGG---------GSCHHHHHHHHHHHHH
T ss_pred             ----------------------------------HHHcCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHHHHH
Confidence                                              499999999999999999887         5689999999999999


Q ss_pred             HhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          386 RSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       386 ~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      .++.++|++|||+||+  ++|+|+|-
T Consensus       231 ~~~~s~d~~eg~~af~--ekr~p~f~  254 (256)
T 3trr_A          231 PIFVSEDAKEGAKAFA--EKRAPVWQ  254 (256)
T ss_dssp             HHHTSHHHHHHHHHHH--TTSCCCCC
T ss_pred             HHhCCHHHHHHHHHHh--cCCCCCCC
Confidence            9999999999999999  77888874

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=9.4e-56  Score=423.85  Aligned_cols=252  Identities=18%  Similarity=0.187  Sum_probs=204.7

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.+++|+++|+|||+|.| ++||+|+|++++.......  .
T Consensus        10 m~~v~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~--~   85 (262)
T 3r9q_A           10 QPAVRVEK-AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDN-GTFCAGADLKAMGTDRGNE--L   85 (262)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCTTTTTSTTSCC--C
T ss_pred             CCEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHhccChhh--H
Confidence            44588887 799999999999999999999999999999999999999999999998 8999999999986532110  0


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      .. .    ....+...+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus        86 ~~-~----~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  160 (262)
T 3r9q_A           86 HP-H----GPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHS  160 (262)
T ss_dssp             CT-T----SSCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHH
T ss_pred             HH-h----hhhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHH
Confidence            00 0    001122346689999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++                                     
T Consensus       161 -~A~~l~ltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~-------------------------------------  201 (262)
T 3r9q_A          161 -RAMDLILTGRPVH-ANEALDIGLVNRVVARGQAREAAETLAA-------------------------------------  201 (262)
T ss_dssp             -HHHHHHHHCCCEE-HHHHHHTTSCSEEECTTCHHHHHHHHHH-------------------------------------
T ss_pred             -HHHHHHHcCCcCC-HHHHHHcCCccEecChhHHHHHHHHHHH-------------------------------------
Confidence             9999999999999 9999999999999999998766555543                                     


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                                                         +|++.||.+++.+|+++++..         ..+++++++.|.+ +
T Consensus       202 -----------------------------------~la~~~~~a~~~~K~~~~~~~---------~~~l~~~l~~e~~-~  236 (262)
T 3r9q_A          202 -----------------------------------EIAAFPQQCVRADRDSAIAQW---------GMAEEAALDNEFG-S  236 (262)
T ss_dssp             -----------------------------------HHHHSCHHHHHHHHHHHHHTT---------TSCHHHHHHHHHT-H
T ss_pred             -----------------------------------HHHhCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHH-H
Confidence                                               499999999999999999876         6789999999999 8


Q ss_pred             HHhCCCchHHHHHHhhHhCCCCCCCCCc
Q 015014          385 LRSSLRSDFAEGVRAVLVDKDQVLSQLK  412 (414)
Q Consensus       385 ~~~~~~~D~~eGv~afl~dk~~~P~~~~  412 (414)
                      ..++.+ |++||++||+  ++++|.|-+
T Consensus       237 ~~~~~s-d~~Eg~~AF~--ekr~p~~~~  261 (262)
T 3r9q_A          237 IERVAT-EALEGAGRFA--AGEGRHGAG  261 (262)
T ss_dssp             HHHHHC----------------------
T ss_pred             HHHhcc-HHHHHHHHHH--cCCCCCCCC
Confidence            888888 9999999999  778888854

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=9.7e-55  Score=418.18  Aligned_cols=252  Identities=21%  Similarity=0.279  Sum_probs=218.6

Q ss_pred             ccEEEE----EecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhC
Q 015014           66 EFVKGN----VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (414)
Q Consensus        66 ~~v~~~----~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~  141 (414)
                      +.+.|+    . +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....   
T Consensus         7 ~~v~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---   81 (267)
T 3oc7_A            7 ALVDYAGPAAT-GGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTG-GTFCAGADLSEAGSGG---   81 (267)
T ss_dssp             SSEEEECHHHH-SSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECS-SEEECCBC-----------
T ss_pred             cccCCCCccce-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CceeCCcCchhhhhcc---
Confidence            457776    4 789999999999999999999999999999999999999999999998 7999999999876211   


Q ss_pred             CCCCc---hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHh
Q 015014          142 RNTPL---VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA  218 (414)
Q Consensus       142 ~~~~~---~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~  218 (414)
                      .....   ...+....+.++.++.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~  161 (267)
T 3oc7_A           82 SPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP  161 (267)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT
T ss_pred             CchhhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH
Confidence            11111   113556667788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhh
Q 015014          219 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLL  298 (414)
Q Consensus       219 r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  298 (414)
                       ++|.. ++++|++||+.|+ |+||+++||||+|  ++++.+.+.+++                                
T Consensus       162 -~vG~~-~A~~l~ltg~~~~-a~eA~~~GLv~~v--~~~l~~~a~~~a--------------------------------  204 (267)
T 3oc7_A          162 -KLSAR-AAARYYLTGEKFD-ARRAEEIGLITMA--AEDLDAAIDQLV--------------------------------  204 (267)
T ss_dssp             -TSCHH-HHHHHHHHCCCBC-HHHHHHHTSSSEE--CSSHHHHHHHHH--------------------------------
T ss_pred             -HhCHH-HHHHHHHcCCccC-HHHHHHCCChhhh--hHHHHHHHHHHH--------------------------------
Confidence             89998 9999999999999 9999999999999  677765544443                                


Q ss_pred             HHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHH
Q 015014          299 LPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMK  378 (414)
Q Consensus       299 ~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~  378 (414)
                                                              ++|+++||.+++.+|+++++..         ..+++++++
T Consensus       205 ----------------------------------------~~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~  235 (267)
T 3oc7_A          205 ----------------------------------------TDVGRGSPQGLAASKALTTAAV---------LERFDRDAE  235 (267)
T ss_dssp             ----------------------------------------HHHHTSCHHHHHHHHHHHHHHH---------HHHHHHHHH
T ss_pred             ----------------------------------------HHHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHH
Confidence                                                    3599999999999999999887         567999999


Q ss_pred             HHHHHHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          379 YEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       379 ~e~~~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .|...+..++.++|++|||++|+  ++|+|+|
T Consensus       236 ~e~~~~~~~~~s~d~~eg~~af~--ekr~p~f  265 (267)
T 3oc7_A          236 RLAEESARLFVSDEAREGMLAFL--EKRSPNW  265 (267)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHHH--HTCCCTT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHH--cCCCCCC
Confidence            99999999999999999999999  6778876

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=5.8e-56  Score=426.16  Aligned_cols=255  Identities=24%  Similarity=0.383  Sum_probs=224.6

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..... ....
T Consensus         6 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~-~~~~   82 (265)
T 3qxz_A            6 VTELHEEI-RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAP-PAFCSGAQISAAAETFA-APRN   82 (265)
T ss_dssp             CCEEEEEE-ETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCBCSTTCTTCCC-CCCS
T ss_pred             cceEEEEE-ECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CccccCcChHHHhhccc-hhHH
Confidence            46688887 799999999999999999999999999999999999999999999998 89999999998765211 1111


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      .    ++.. +.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        83 ~----~~~~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (265)
T 3qxz_A           83 P----DFSA-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTA  157 (265)
T ss_dssp             S----CCCS-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHH
T ss_pred             H----HHHH-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHH
Confidence            1    1111 3456678999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       ++++|++||+.++ |+||+++||||+|||++++.+.+.+++                                      
T Consensus       158 -~A~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a--------------------------------------  197 (265)
T 3qxz_A          158 -VAAELLLTGASFS-AQRAVETGLANRCLPAGKVLGAALRMA--------------------------------------  197 (265)
T ss_dssp             -HHHHHHHHCCCBC-HHHHHHHTSCSEEECHHHHHHHHHHHH--------------------------------------
T ss_pred             -HHHHHHHcCCCcC-HHHHHHCCCccEeeCHHHHHHHHHHHH--------------------------------------
Confidence             9999999999999 999999999999999877765444443                                      


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHHhhcCCCCcccCCHHHH--HHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKG-APFSLCLTQKYFSKVASAHGKTDNELSKLSGV--MKYEY  381 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~-sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~--l~~e~  381 (414)
                                                        ++|+++ ||.+++.+|+++++..         ..+++++  ++.|.
T Consensus       198 ----------------------------------~~la~~~~p~a~~~~K~~l~~~~---------~~~l~~~~~l~~e~  234 (265)
T 3qxz_A          198 ----------------------------------HDIATNVAPESAALTKRLLWDAQ---------MTGMSAAEVAARET  234 (265)
T ss_dssp             ----------------------------------HHHHHHSCHHHHHHHHHHHHHHH---------HHTCCHHHHHHHHH
T ss_pred             ----------------------------------HHHHccCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHH
Confidence                                              348889 9999999999999887         4567888  99999


Q ss_pred             HHHHHhCCCchHHHHHHhhHhCCCCCCCCCc
Q 015014          382 RVALRSSLRSDFAEGVRAVLVDKDQVLSQLK  412 (414)
Q Consensus       382 ~~~~~~~~~~D~~eGv~afl~dk~~~P~~~~  412 (414)
                      ..+..++.++|++|||+||+  ++|+|+|-.
T Consensus       235 ~~~~~~~~s~d~~egi~Af~--ekr~P~f~g  263 (265)
T 3qxz_A          235 ADHLRLMGSQDAAEGPRAFI--DGRPPRWAG  263 (265)
T ss_dssp             HHHHHHHTSTHHHHHHHHHH--HTSCCCCCC
T ss_pred             HHHHHHhCChHHHHHHHHHH--cCCCCCCCC
Confidence            99999999999999999999  788888753

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=4.6e-55  Score=417.95  Aligned_cols=249  Identities=23%  Similarity=0.252  Sum_probs=188.9

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      .+..|.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.........
T Consensus         4 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   81 (256)
T 3qmj_A            4 SMVTLQIDD-DNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSG-RGFSAGTDLAEMQARITDPNF   81 (256)
T ss_dssp             --CCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCBCHHHHHHHHHSSSC
T ss_pred             CcceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcCHHHHhhcccchhH
Confidence            456788887 799999999999999999999999999999999999999999999998 999999999998764322211


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      ...    ....+.++.++.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.
T Consensus        82 ~~~----~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~  157 (256)
T 3qmj_A           82 SEG----KFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGR  157 (256)
T ss_dssp             CCC----SSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHH
T ss_pred             HHH----HHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCH
Confidence            111    2233567788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|++||+.++ |+||+++||||+|+|++++.+.+.++++                                    
T Consensus       158 ~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~------------------------------------  199 (256)
T 3qmj_A          158 Q-NAAWLLMSSEWID-AEEALRMGLVWRICSPEELLPEARRHAE------------------------------------  199 (256)
T ss_dssp             H-HHHHHHHSCCCEE-HHHHHHHTSSSEEECGGGHHHHHHHHHH------------------------------------
T ss_pred             H-HHHHHHHcCCCCC-HHHHHHCCCccEEeCHhHHHHHHHHHHH------------------------------------
Confidence            8 9999999999999 9999999999999999888765554443                                    


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                          +|++.||.+++.+|+++++..         ..+++++++.|...
T Consensus       200 ------------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~l~~e~~~  234 (256)
T 3qmj_A          200 ------------------------------------ILAAKPISSLMAVKHTMVEPN---------RAQIAAASARENAH  234 (256)
T ss_dssp             ------------------------------------HHHTSCHHHHHHHHHHHHCC------------------------
T ss_pred             ------------------------------------HHHhCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHHH
Confidence                                                499999999999999999876         56799999999999


Q ss_pred             HHHhCCCchHHHHHHhhH
Q 015014          384 ALRSSLRSDFAEGVRAVL  401 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl  401 (414)
                      +..++.++|++|||++|+
T Consensus       235 ~~~~~~s~d~~eg~~af~  252 (256)
T 3qmj_A          235 FAELMGAQANAAALADFT  252 (256)
T ss_dssp             ------------------
T ss_pred             HHHHhcCHHHHHHHHHHH
Confidence            999999999999999999

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=7.3e-55  Score=423.52  Aligned_cols=259  Identities=18%  Similarity=0.210  Sum_probs=220.4

Q ss_pred             CCCccEEEEEecCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhC
Q 015014           63 GAEEFVKGNVHPNGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itln-rp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~  141 (414)
                      ..++.|.++. +++|++|||| ||+++|+||.+|+.+|.++++.++.|+. |+|||+|.| ++||+|+|++++.......
T Consensus        20 ~~~~~v~~~~-~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G-~~FcaG~Dl~~~~~~~~~~   96 (291)
T 2fbm_A           20 STYRDIVVKK-EDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAG-SVFCCGLDFGYFVKHLRNN   96 (291)
T ss_dssp             -CCSSEEEEE-CSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECS-SCSBCCBCHHHHHHHHHHC
T ss_pred             CCcceEEEEE-eCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCC-CCccCCcCHHHHHhccccc
Confidence            4678888887 7899999999 7999999999999999999999999875 999999997 8999999999986422111


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCC
Q 015014          142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP  221 (414)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~  221 (414)
                       .......+......++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++
T Consensus        97 -~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~v  175 (291)
T 2fbm_A           97 -RNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMM  175 (291)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHH
Confidence             0011122334455677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHH
Q 015014          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ  301 (414)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  301 (414)
                      |.. ++++|++||+.|+ |+||+++|||++|||++++.+.+.+++.                                  
T Consensus       176 G~~-~A~el~ltg~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~a~----------------------------------  219 (291)
T 2fbm_A          176 GKA-SANEMLIAGRKLT-AREACAKGLVSQVFLTGTFTQEVMIQIK----------------------------------  219 (291)
T ss_dssp             CHH-HHHHHHTSCCEEE-HHHHHHTTSCSEEECSTTSHHHHHHHHH----------------------------------
T ss_pred             hHH-HHHHHHHcCCccC-HHHHHHCCCcceecChhHHHHHHHHHHH----------------------------------
Confidence            998 9999999999999 9999999999999999998765544443                                  


Q ss_pred             HHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHH
Q 015014          302 ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEY  381 (414)
Q Consensus       302 i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~  381 (414)
                                                            +|+++||.+++.+|++++...         ..+++++++.|.
T Consensus       220 --------------------------------------~la~~~p~a~~~~K~~l~~~~---------~~~l~~~l~~e~  252 (291)
T 2fbm_A          220 --------------------------------------ELASYNPIVLEECKALVRCNI---------KLELEQANEREC  252 (291)
T ss_dssp             --------------------------------------HHTTSCHHHHHHHHHHHHTTT---------HHHHHHHHHHHH
T ss_pred             --------------------------------------HHHhCCHHHHHHHHHHHHhhh---------ccCHHHHHHHHH
Confidence                                                  499999999999999999765         446899999999


Q ss_pred             HHHHHhCCCchHHHHHHhh-HhCCCCCCCC
Q 015014          382 RVALRSSLRSDFAEGVRAV-LVDKDQVLSQ  410 (414)
Q Consensus       382 ~~~~~~~~~~D~~eGv~af-l~dk~~~P~~  410 (414)
                      ..+..++.++|++||++|| +  ++|+|+|
T Consensus       253 ~~~~~~~~s~d~~eg~~Af~~--ekR~P~f  280 (291)
T 2fbm_A          253 EVLRKIWSSAQGIESMLKIPL--LGYKAAF  280 (291)
T ss_dssp             HHHHHHHTSHHHHHHHHTC-----------
T ss_pred             HHHHHHhcCHHHHHHHHHHHh--cCCCCCC
Confidence            9999999999999999999 9  6788876

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=3.9e-55  Score=422.41  Aligned_cols=258  Identities=18%  Similarity=0.151  Sum_probs=218.0

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-----CCCCCccCCCChhhHHHHh
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEG-----SGPRAFCAGMDIKGVVAEI  138 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g-----~g~~~FcaG~Dl~~~~~~~  138 (414)
                      .++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||     .|+++||+|+|++++....
T Consensus         8 ~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~   86 (275)
T 4eml_A            8 HYDDILYYK-AGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGG   86 (275)
T ss_dssp             ECSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC------
T ss_pred             CCceEEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhccc
Confidence            467798987 7999999999999999999999999999999999999999999999     8867999999999876421


Q ss_pred             hhCCCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHh
Q 015014          139 QKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA  218 (414)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~  218 (414)
                      ..+  ..  .........++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus        87 ~~~--~~--~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~  162 (275)
T 4eml_A           87 YID--DQ--GTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLA  162 (275)
T ss_dssp             ------------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHH
T ss_pred             ccc--hh--hHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHH
Confidence            000  00  00111134567789999999999999999999999999999999999999999999999999888899999


Q ss_pred             hCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhh
Q 015014          219 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLL  298 (414)
Q Consensus       219 r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  298 (414)
                      +++|.. ++++|++||+.|+ |+||+++|||++|||++++.+.+.++++                               
T Consensus       163 r~vG~~-~A~~llltg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~-------------------------------  209 (275)
T 4eml_A          163 RIVGQK-KAREIWYLCRQYS-AQEAERMGMVNTVVPVDRLEEEGIQWAK-------------------------------  209 (275)
T ss_dssp             HHHCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHHHHHH-------------------------------
T ss_pred             HHhHHH-HHHHHHHhCCCcC-HHHHHHcCCccEeeCHHHHHHHHHHHHH-------------------------------
Confidence            999998 9999999999999 9999999999999999988765555443                               


Q ss_pred             HHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHH
Q 015014          299 LPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMK  378 (414)
Q Consensus       299 ~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~  378 (414)
                                                               +|+++||.+++.+|+++++..          ....+..+
T Consensus       210 -----------------------------------------~la~~~~~a~~~~K~~l~~~~----------~~~~~~~~  238 (275)
T 4eml_A          210 -----------------------------------------EILSKSPLAIRCLKAAFNADC----------DGQAGLQE  238 (275)
T ss_dssp             -----------------------------------------HHHTSCHHHHHHHHHHHHHTT----------SHHHHHHH
T ss_pred             -----------------------------------------HHHhCCHHHHHHHHHHHHhhh----------ccchhHHH
Confidence                                                     499999999999999999764          12444556


Q ss_pred             HHHHHHHHhCCCchHHHHHHhhHhCCCCCCCCCc
Q 015014          379 YEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQLK  412 (414)
Q Consensus       379 ~e~~~~~~~~~~~D~~eGv~afl~dk~~~P~~~~  412 (414)
                      .|...+..++.++|++|||+||+  ++|+|+|-+
T Consensus       239 ~~~~~~~~~~~s~d~~eg~~AF~--ekR~p~f~~  270 (275)
T 4eml_A          239 LAGNATLLYYMTEEGSEGKQAFL--EKRPPDFSQ  270 (275)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHHH--TTSCCCCTT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHH--cCCCCCCCC
Confidence            67777778889999999999999  788898854

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=2.7e-54  Score=411.92  Aligned_cols=252  Identities=24%  Similarity=0.321  Sum_probs=221.7

Q ss_pred             EEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCch
Q 015014           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (414)
Q Consensus        68 v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (414)
                      |.++  +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....... .....
T Consensus         2 i~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~~~~~   77 (253)
T 1uiy_A            2 VQVE--KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGADLAFLERVTELG-AEENY   77 (253)
T ss_dssp             EEEE--CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCCCHHHHHHHTTSC-HHHHH
T ss_pred             EEEE--eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcChHHHHhcccCC-chhHH
Confidence            4555  688999999999999999999999999999999999999999999998 8999999999886531000 00001


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHH
Q 015014          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (414)
Q Consensus       148 ~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a  227 (414)
                      . .....+.++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++| +++|++++|.. ++
T Consensus        78 ~-~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~-~a  154 (253)
T 1uiy_A           78 R-HSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEK-AA  154 (253)
T ss_dssp             H-HHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHH-HH
T ss_pred             H-HHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHH-HH
Confidence            1 111156778899999999999999999999999999999999999999999999999999999 99999999998 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcC
Q 015014          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS  307 (414)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~  307 (414)
                      ++|++||+.++ |+||+++||||+|+|++++.+.+.++++                                        
T Consensus       155 ~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~----------------------------------------  193 (253)
T 1uiy_A          155 KDLLLTGRLVE-AREAKALGLVNRIAPPGKALEEAKALAE----------------------------------------  193 (253)
T ss_dssp             HHHHHHCCEEE-HHHHHHHTSCSEEECTTCHHHHHHHHHH----------------------------------------
T ss_pred             HHHHHhCCccC-HHHHHHCCCcceecChhHHHHHHHHHHH----------------------------------------
Confidence            99999999999 9999999999999999998765554443                                        


Q ss_pred             CcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHh
Q 015014          308 SEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRS  387 (414)
Q Consensus       308 ~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~  387 (414)
                                                      +|++.||.+++.+|++++...         ..+++++++.|.+.+..+
T Consensus       194 --------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~~~~~l~~e~~~~~~~  232 (253)
T 1uiy_A          194 --------------------------------EVAKNAPTSLRLTKELLLALP---------GMGLEDGFRLAALANAWV  232 (253)
T ss_dssp             --------------------------------HHHHSCHHHHHHHHHHHHHGG---------GSCHHHHHHHHHHHHHHG
T ss_pred             --------------------------------HHHcCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHHHHHHH
Confidence                                            489999999999999999876         568999999999999999


Q ss_pred             CCCchHHHHHHhhHhCCCCCCCC
Q 015014          388 SLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       388 ~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +.++|++||+++|+  ++|+|+|
T Consensus       233 ~~s~d~~eg~~af~--~kr~p~~  253 (253)
T 1uiy_A          233 RETGDLAEGIRAFF--EKRPPRF  253 (253)
T ss_dssp             GGCHHHHHHHHHHH--TTSCCCC
T ss_pred             hcCHHHHHHHHHHh--CcCCCCC
Confidence            99999999999999  6688876

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=1.6e-54  Score=416.04  Aligned_cols=255  Identities=17%  Similarity=0.172  Sum_probs=225.1

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      ++.|.++.++++|++||||||+ +|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++ +.......  .
T Consensus         9 ~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~-~~~~~~~~--~   83 (264)
T 1wz8_A            9 YPGLAFAWPRPGVLEITFRGEK-LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEG-GVFSAGGSFG-LIEEMRAS--H   83 (264)
T ss_dssp             CTTEEEEEEETTEEEEEECCSG-GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGG-GCCBCCBCHH-HHHHHHHC--H
T ss_pred             CCeEEEEEccCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCCcccCccc-cccccccc--h
Confidence            4567787536899999999999 9999999999999999999999999999999998 8999999999 65421101  0


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      +....++...++++.++.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..
T Consensus        84 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  163 (264)
T 1wz8_A           84 EALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMA  163 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHH
Confidence            11123445566788899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       ++++|++||+.++ |+||+++||||+|||++++.+.+.++++                                     
T Consensus       164 -~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~-------------------------------------  204 (264)
T 1wz8_A          164 -KAKYHLLLNEPLT-GEEAERLGLVALAVEDEKVYEKALEVAE-------------------------------------  204 (264)
T ss_dssp             -HHHHHHHHTCCEE-HHHHHHHTSSSEEECGGGHHHHHHHHHH-------------------------------------
T ss_pred             -HHHHHHHcCCCCC-HHHHHHCCCceeecChhHHHHHHHHHHH-------------------------------------
Confidence             9999999999999 9999999999999999888765544443                                     


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                                                         +|++.||.+++.+|+++++..         .. ++++++.|...+
T Consensus       205 -----------------------------------~la~~~~~a~~~~K~~l~~~~---------~~-~~~~l~~e~~~~  239 (264)
T 1wz8_A          205 -----------------------------------RLAQGPKEALHHTKHALNHWY---------RS-FLPHFELSLALE  239 (264)
T ss_dssp             -----------------------------------HHHTSCHHHHHHHHHHHHHHH---------HT-THHHHHHHHHHH
T ss_pred             -----------------------------------HHHhCCHHHHHHHHHHHHHHH---------HH-HHHHHHHHHHHH
Confidence                                               489999999999999999877         45 899999999999


Q ss_pred             HHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          385 LRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       385 ~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ..++.++|++||+++|+  ++|+|+|
T Consensus       240 ~~~~~s~d~~eg~~af~--ekr~p~f  263 (264)
T 1wz8_A          240 FLGFSGKELEEGLKALK--EKRPPEF  263 (264)
T ss_dssp             HHGGGSHHHHHHHHHHH--TTSCCCC
T ss_pred             HHHhcChHHHHHHHHHH--ccCCCCC
Confidence            99999999999999999  6778876

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=4.6e-55  Score=421.45  Aligned_cols=252  Identities=17%  Similarity=0.234  Sum_probs=223.1

Q ss_pred             cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHH
Q 015014           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA  153 (414)
Q Consensus        74 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (414)
                      +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++...     .......+...
T Consensus        19 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~-----~~~~~~~~~~~   93 (272)
T 1hzd_A           19 NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKM-----SSSEVGPFVSK   93 (272)
T ss_dssp             GTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTS-----CHHHHHHHHHH
T ss_pred             cCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhcc-----ChHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999987899999999987531     11112234455


Q ss_pred             HHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhc
Q 015014          154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT  233 (414)
Q Consensus       154 ~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~lt  233 (414)
                      .+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. ++++|++|
T Consensus        94 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~-~A~~l~lt  172 (272)
T 1hzd_A           94 IRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMS-LAKELIFS  172 (272)
T ss_dssp             HHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH-HHHHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHH-HHHHHHHc
Confidence            56788899999999999999999999999999999999999999999999999999999999999999998 99999999


Q ss_pred             CCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcCCcccHH
Q 015014          234 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVR  313 (414)
Q Consensus       234 G~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~sv~  313 (414)
                      |+.|+ |+||+++||||+|+|++++.+.+                                                   
T Consensus       173 g~~~~-a~eA~~~GLv~~vv~~~~l~~~~---------------------------------------------------  200 (272)
T 1hzd_A          173 ARVLD-GKEAKAVGLISHVLEQNQEGDAA---------------------------------------------------  200 (272)
T ss_dssp             TCEEE-HHHHHHHTSCSEEECCCTTSCHH---------------------------------------------------
T ss_pred             CCcCC-HHHHHHCCCcceecChhhhhHHH---------------------------------------------------
Confidence            99999 99999999999999998864311                                                   


Q ss_pred             HHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHhCCCchH
Q 015014          314 QIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDF  393 (414)
Q Consensus       314 ~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~  393 (414)
                                       .+++.+.+++|+++||.+++.+|++++...         ..+++++++.|.+.+..++.++|+
T Consensus       201 -----------------~~~a~~~a~~la~~~p~a~~~~K~~l~~~~---------~~~~~~~l~~e~~~~~~~~~s~d~  254 (272)
T 1hzd_A          201 -----------------YRKALDLAREFLPQGPVAMRVAKLAINQGM---------EVDLVTGLAIEEACYAQTIPTKDR  254 (272)
T ss_dssp             -----------------HHHHHHHHHTTTTSCHHHHHHHHHHHHHHH---------TSCHHHHHHHHHHHHHTTTTCHHH
T ss_pred             -----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhCCHHH
Confidence                             123333445689999999999999999887         568999999999999999999999


Q ss_pred             HHHHHhhHhCCCCCCCCC
Q 015014          394 AEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       394 ~eGv~afl~dk~~~P~~~  411 (414)
                      +|||++|+  ++|+|+|-
T Consensus       255 ~egi~af~--ekr~p~~~  270 (272)
T 1hzd_A          255 LEGLLAFK--EKRPPRYK  270 (272)
T ss_dssp             HHHHHHHT--TTSCCCCC
T ss_pred             HHHHHHHh--cCCCCCCC
Confidence            99999999  77888763

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=5.6e-55  Score=420.78  Aligned_cols=258  Identities=17%  Similarity=0.198  Sum_probs=221.5

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      ..++.|.++.++++|++||||||+ +|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.....   
T Consensus        10 ~~~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~---   84 (272)
T 3qk8_A           10 QDFPSLRFEPGEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEG-KAFSSGGSFELIDETIG---   84 (272)
T ss_dssp             GGCTTEEEEECSTTEEEEEECCHH-HHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESS-SCSBCEECHHHHHHHHH---
T ss_pred             CCCCeEEEEEeCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCeeCCcCHHHHhcccc---
Confidence            356789998744589999999999 9999999999999999999999999999999998 89999999999865321   


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                      .......++...+.++.++.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG  164 (272)
T 3qk8_A           85 DYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVG  164 (272)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHC
T ss_pred             chHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhC
Confidence            11112235556667888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||+.++ |+||+++||||+|||++++.+.+.++++                                   
T Consensus       165 ~~-~A~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~-----------------------------------  207 (272)
T 3qk8_A          165 MA-KAKYYLLTCETLS-GEEAERIGLVSTCVDDDEVLPTATRLAE-----------------------------------  207 (272)
T ss_dssp             HH-HHHHHHHHCCCEE-HHHHHHHTSSSEEECGGGHHHHHHHHHH-----------------------------------
T ss_pred             HH-HHHHHHHcCCCCC-HHHHHHCCCCcEeeCHhHHHHHHHHHHH-----------------------------------
Confidence            98 9999999999999 9999999999999999888765555443                                   


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                                                           +|+++||.+++.+|++++.....      ....+++.++.|  
T Consensus       208 -------------------------------------~la~~~~~a~~~~K~~l~~~~~~------~~~~~~~~~~~e--  242 (272)
T 3qk8_A          208 -------------------------------------NLAQGAQNAIRWTKRSLNHWYRM------FGPTFETSLGLE--  242 (272)
T ss_dssp             -------------------------------------HHHTSCHHHHHHHHHHHHHHHHH------THHHHHHHHHHH--
T ss_pred             -------------------------------------HHHcCCHHHHHHHHHHHHHHHhh------cchhHHHHHHHH--
Confidence                                                 49999999999999999976510      012345555555  


Q ss_pred             HHHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          383 VALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       383 ~~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                        ..++.++|++|||+||+  ++|+|+|-
T Consensus       243 --~~~~~s~d~~eg~~Af~--ekR~p~f~  267 (272)
T 3qk8_A          243 --FLGFTGPDVQEGLAAHR--QKRPARFT  267 (272)
T ss_dssp             --HHHTTSSHHHHHHHHHH--TTSCCCC-
T ss_pred             --HHHhCCHHHHHHHHHHH--cCCCCCCC
Confidence              46789999999999999  77888874

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=4.2e-55  Score=419.34  Aligned_cols=258  Identities=18%  Similarity=0.214  Sum_probs=224.3

Q ss_pred             CCccEEEEEecCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           64 AEEFVKGNVHPNGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itln-rp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      .++.|.++. +++|++|||| ||+++|+||.+|+.+|.++++.++.|+. ++|||+|.| ++||+|+|++++....... 
T Consensus         3 ~~~~i~~~~-~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~~-r~vvltg~g-~~F~aG~Dl~~~~~~~~~~-   78 (261)
T 2gtr_A            3 RYRDIVVRK-QDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDS-KLVLLSAVG-SVFCCGLDFIYFIRRLTDD-   78 (261)
T ss_dssp             CCSSEEEEE-ETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSSC-SCEEEEESS-SCSBCEECHHHHHHHHHHC-
T ss_pred             ccceEEEEE-eCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCCC-EEEEEecCC-CccccccCchhhhhccccc-
Confidence            356688887 7899999999 6999999999999999999999999874 999999997 8999999999986522111 


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                      .......+......++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  158 (261)
T 2gtr_A           79 RKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMG  158 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcC
Confidence            00111223344566778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .+ ++++|++||+.++ |+||+++||||+|||++++.+.+.+++.                                   
T Consensus       159 ~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~-----------------------------------  201 (261)
T 2gtr_A          159 GA-SANEMLLSGRKLT-AQEACGKGLVSQVFWPGTFTQEVMVRIK-----------------------------------  201 (261)
T ss_dssp             HH-HHHHHHHHCCCEE-HHHHHHTTSCSEEECGGGHHHHHHHHHH-----------------------------------
T ss_pred             HH-HHHHHHHcCCCCC-HHHHHHCCCcccccChhHHHHHHHHHHH-----------------------------------
Confidence            98 9999999999999 9999999999999999888765544433                                   


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                                                           +|++.||.+++.+|++++...         ..++++.++.|.+
T Consensus       202 -------------------------------------~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~e~~  235 (261)
T 2gtr_A          202 -------------------------------------ELASCNPVVLEESKALVRCNM---------KMELEQANERECE  235 (261)
T ss_dssp             -------------------------------------HHHTSCHHHHHHHHHHHHTTT---------HHHHHHHHHHHHH
T ss_pred             -------------------------------------HHHhCCHHHHHHHHHHHHhcc---------ccCHHHHHHHHHH
Confidence                                                 489999999999999999765         4468999999999


Q ss_pred             HHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          383 VALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       383 ~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .+..++.++|++||+++|+  ++|+|+|
T Consensus       236 ~~~~~~~s~d~~eg~~af~--ekr~P~f  261 (261)
T 2gtr_A          236 VLKKIWGSAQGMDSMLKYL--QRKIDEF  261 (261)
T ss_dssp             HHHHHHHSTTTTHHHHHHH--HHHHHC-
T ss_pred             HHHHHhCCHHHHHHHHHHH--ccCCCCC
Confidence            9999999999999999999  6688876

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=1.2e-54  Score=415.99  Aligned_cols=254  Identities=23%  Similarity=0.296  Sum_probs=221.6

Q ss_pred             CCccEEEEE--ecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhC
Q 015014           64 AEEFVKGNV--HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (414)
Q Consensus        64 ~~~~v~~~~--~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~  141 (414)
                      +|+.+.++.  ..++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...    
T Consensus         2 ~~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~----   76 (260)
T 1mj3_A            2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGE-KAFAAGADIKEMQNR----   76 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SEEECCBCHHHHTTC----
T ss_pred             CcccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCccCCcChHhhhcc----
Confidence            356677764  2678999999999999999999999999999999999999999999997 899999999986431    


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCC
Q 015014          142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP  221 (414)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~  221 (414)
                         .....+.......+..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++
T Consensus        77 ---~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~v  153 (260)
T 1mj3_A           77 ---TFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAV  153 (260)
T ss_dssp             ---CHHHHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHH
T ss_pred             ---cchHHHHHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHh
Confidence               00011111112234578899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHH
Q 015014          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ  301 (414)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  301 (414)
                      |.. ++++|++||+.++ |+||+++||||+|||++++.+.+.+++                                   
T Consensus       154 G~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a-----------------------------------  196 (260)
T 1mj3_A          154 GKS-LAMEMVLTGDRIS-AQDAKQAGLVSKIFPVETLVEEAIQCA-----------------------------------  196 (260)
T ss_dssp             CHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECTTTHHHHHHHHH-----------------------------------
T ss_pred             CHH-HHHHHHHcCCcCC-HHHHHHcCCccEEeChHHHHHHHHHHH-----------------------------------
Confidence            998 9999999999999 999999999999999998866544443                                   


Q ss_pred             HHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHH
Q 015014          302 ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEY  381 (414)
Q Consensus       302 i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~  381 (414)
                                                           ++|+++||.+++.+|+++++..         ..+++++++.|.
T Consensus       197 -------------------------------------~~la~~~~~a~~~~K~~l~~~~---------~~~~~~~l~~e~  230 (260)
T 1mj3_A          197 -------------------------------------EKIANNSKIIVAMAKESVNAAF---------EMTLTEGNKLEK  230 (260)
T ss_dssp             -------------------------------------HHHHHSCHHHHHHHHHHHHGGG---------SSCHHHHHHHHH
T ss_pred             -------------------------------------HHHHcCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHH
Confidence                                                 3489999999999999999876         568999999999


Q ss_pred             HHHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          382 RVALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       382 ~~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +.+..++.++|++||+++|+  ++|+|+|
T Consensus       231 ~~~~~~~~s~d~~egi~af~--~kr~p~~  257 (260)
T 1mj3_A          231 KLFYSTFATDDRREGMSAFV--EKRKANF  257 (260)
T ss_dssp             HHHHHGGGSHHHHHHHHHHH--TTSCCCC
T ss_pred             HHHHHHhcCHHHHHHHHHHH--cCCCCCC
Confidence            99999999999999999999  5677876

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=1e-54  Score=417.42  Aligned_cols=252  Identities=19%  Similarity=0.241  Sum_probs=215.0

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      ..++.|.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.....   
T Consensus        12 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~---   86 (265)
T 3qxi_A           12 DTEPEVLVEQ-RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAG-GSFCAGMDLKAFARGEN---   86 (265)
T ss_dssp             ---CCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCCCCSBC-------CC---
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCeeCCCChhhhhccch---
Confidence            3567898987 799999999999999999999999999999999999999999999998 89999999999765211   


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                      .......+     . +..+.. ||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|
T Consensus        87 ~~~~~~~~-----~-~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  159 (265)
T 3qxi_A           87 VVVEGRGL-----G-FTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIP  159 (265)
T ss_dssp             CEETTTEE-----T-TTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSC
T ss_pred             hhhhhhhh-----h-HHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhC
Confidence            00000000     0 223334 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++                                   
T Consensus       160 ~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~-----------------------------------  202 (265)
T 3qxi_A          160 YA-IAMELALTGDNLS-AERAHALGMVNVLAEPGAALDAAIALAE-----------------------------------  202 (265)
T ss_dssp             HH-HHHHHHHHCCCEE-HHHHHHTTSCSEEECTTCHHHHHHHHHH-----------------------------------
T ss_pred             HH-HHHHHHHcCCCcC-HHHHHHCCCccEeeChhHHHHHHHHHHH-----------------------------------
Confidence            98 9999999999999 9999999999999999998765554443                                   


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                                                           +|++.||.+++.+|+++++..         ..+++++++.|.+
T Consensus       203 -------------------------------------~la~~~p~a~~~~K~~l~~~~---------~~~l~~~l~~e~~  236 (265)
T 3qxi_A          203 -------------------------------------KITANGPLAVAATKRIITESR---------GWSLDTRFAQQMK  236 (265)
T ss_dssp             -------------------------------------HHHTSCHHHHHHHHHHHHHHT---------TCCTTTHHHHHHH
T ss_pred             -------------------------------------HHHcCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHH
Confidence                                                 499999999999999999876         5688999999999


Q ss_pred             HHHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          383 VALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       383 ~~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      .+..++.++|++|||+||+  ++|+|+|-
T Consensus       237 ~~~~~~~s~d~~eg~~af~--ekr~p~f~  263 (265)
T 3qxi_A          237 ILFPIFTSNDAKEGAIAFA--EKRPPRWT  263 (265)
T ss_dssp             HHHHHHHCHHHHHHHHHHH--TTSCCCCC
T ss_pred             HHHHHhcCHHHHHHHHHHH--cCCCCCCC
Confidence            9999999999999999999  67888873

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=6.1e-54  Score=414.15  Aligned_cols=246  Identities=20%  Similarity=0.260  Sum_probs=221.8

Q ss_pred             ccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCC
Q 015014           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (414)
Q Consensus        66 ~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (414)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.....   +..
T Consensus        28 ~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~---~~~  102 (276)
T 3rrv_A           28 TEIDVRA-DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAG-RAFSAGGDFGYLKELSA---DAD  102 (276)
T ss_dssp             TTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCHHHHHHHHH---CHH
T ss_pred             CeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CcccCCcCHHHHhhccc---chH
Confidence            4688876 799999999999999999999999999999999999999999999998 89999999999876321   111


Q ss_pred             chHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHH
Q 015014          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (414)
Q Consensus       146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~  225 (414)
                      ....++...+.++.++.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. 
T Consensus       103 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~-  181 (276)
T 3rrv_A          103 LRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLL-  181 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHH-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHH-
Confidence            2233555567788899999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhh
Q 015014          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (414)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~  305 (414)
                      ++++|++||+.|+ |+||+++||||+||  +++.+.+.++++                                      
T Consensus       182 ~A~ellltG~~i~-A~eA~~~GLv~~vv--~~l~~~a~~~A~--------------------------------------  220 (276)
T 3rrv_A          182 LAKEYALTGTRIS-AQRAVELGLANHVA--DDPVAEAIACAK--------------------------------------  220 (276)
T ss_dssp             HHHHHHHHCCCEE-HHHHHHHTSCSEEE--SSHHHHHHHHHH--------------------------------------
T ss_pred             HHHHHHHcCCCCC-HHHHHHcCCHHHHH--HHHHHHHHHHHH--------------------------------------
Confidence            9999999999999 99999999999999  777665544443                                      


Q ss_pred             cCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHH
Q 015014          306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL  385 (414)
Q Consensus       306 F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~  385 (414)
                                                        +|++.||.+++.+|+++++..         ..+++++++.|...+.
T Consensus       221 ----------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~l~~e~~~~~  257 (276)
T 3rrv_A          221 ----------------------------------KILELPQQAVESTKRVLNIHL---------ERAVLASLDYALSAES  257 (276)
T ss_dssp             ----------------------------------HHHHSCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------HHHcCCHHHHHHHHHHHHHhh---------hcCHHHHHHHHHHHHH
Confidence                                              499999999999999999876         4568999999999999


Q ss_pred             HhCCCchHHHHHHhhH
Q 015014          386 RSSLRSDFAEGVRAVL  401 (414)
Q Consensus       386 ~~~~~~D~~eGv~afl  401 (414)
                      .++.++|++|||+||+
T Consensus       258 ~~~~s~d~~eg~~AF~  273 (276)
T 3rrv_A          258 QSFVTEDFRSIVTKLA  273 (276)
T ss_dssp             HHTTSHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHH
Confidence            9999999999999999

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=7.4e-55  Score=430.17  Aligned_cols=263  Identities=17%  Similarity=0.151  Sum_probs=190.6

Q ss_pred             CCccEEEEEe-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC------CccCCCChhhHHH
Q 015014           64 AEEFVKGNVH-PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPR------AFCAGMDIKGVVA  136 (414)
Q Consensus        64 ~~~~v~~~~~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~------~FcaG~Dl~~~~~  136 (414)
                      .++.|.++.. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.|++      +||+|+|++++..
T Consensus        53 ~~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~  132 (334)
T 3t8b_A           53 DLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR  132 (334)
T ss_dssp             TCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC-
T ss_pred             CCceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhc
Confidence            4778999873 48999999999999999999999999999999999999999999999854      8999999998643


Q ss_pred             Hhh---hCC---CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEc-CCeeEecccccCCCCC
Q 015014          137 EIQ---KDR---NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-EKTLLAMPENGIGLFP  209 (414)
Q Consensus       137 ~~~---~~~---~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~-~~a~f~~pe~~~Gl~P  209 (414)
                      ...   ...   ..............++..|.++||||||+|||+|+|||++|+++||||||+ ++++|++||+++|++|
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p  212 (334)
T 3t8b_A          133 SGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD  212 (334)
T ss_dssp             ---------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSS
T ss_pred             ccccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCC
Confidence            110   000   000011111223457778999999999999999999999999999999999 9999999999999999


Q ss_pred             ChhHHHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCC
Q 015014          210 DVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP  289 (414)
Q Consensus       210 ~~g~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~  289 (414)
                      ++|++++|+|++|.. ++++|++||+.|+ |+||+++|||++|||++++.+.+.++++                      
T Consensus       213 ~~gg~~~L~r~vG~~-~A~ellltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~A~----------------------  268 (334)
T 3t8b_A          213 GGYGSAYLARQVGQK-FAREIFFLGRTYT-AEQMHQMGAVNAVAEHAELETVGLQWAA----------------------  268 (334)
T ss_dssp             CCSCHHHHHHHHHHH-HHHHHHHHCCEEE-HHHHHHHTSCSEEECGGGHHHHHHHHHH----------------------
T ss_pred             cccHHHHHHHHhhHH-HHHHHHHhCCcCC-HHHHHHCCCCcEecCHHHHHHHHHHHHH----------------------
Confidence            999999999999998 9999999999999 9999999999999999988766555543                      


Q ss_pred             CCcchhhhhHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcc
Q 015014          290 EGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNE  369 (414)
Q Consensus       290 ~~~~~~~~~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~  369 (414)
                                                                        +|+++||.+++.+|++++...         
T Consensus       269 --------------------------------------------------~ia~~~p~a~~~~K~~l~~~~---------  289 (334)
T 3t8b_A          269 --------------------------------------------------EINAKSPQAQRMLKFAFNLLD---------  289 (334)
T ss_dssp             --------------------------------------------------HHHTSCHHHHHHHHHHHHHTC---------
T ss_pred             --------------------------------------------------HHHhCCHHHHHHHHHHHHhhh---------
Confidence                                                              499999999999999999764         


Q ss_pred             cCCHHHHHHHHHHHHHHhCCCchHHHHHHhhHhCCCCCCCCCc
Q 015014          370 LSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQLK  412 (414)
Q Consensus       370 ~~~l~~~l~~e~~~~~~~~~~~D~~eGv~afl~dk~~~P~~~~  412 (414)
                       ..+.+....|...+..++.++|++||++||+  ++|+|+|-.
T Consensus       290 -~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AFl--eKR~P~f~~  329 (334)
T 3t8b_A          290 -DGLVGQQLFAGEATRLAYMTDEAVEGRDAFL--QKRPPDWSP  329 (334)
T ss_dssp             -CCC---------------------------------------
T ss_pred             -cchHHHHHHHHHHHHHHhcCHHHHHHHHHHH--cCCCCCCCC
Confidence             2345556677777778889999999999999  788898843

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=1e-53  Score=412.25  Aligned_cols=255  Identities=18%  Similarity=0.154  Sum_probs=217.7

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      .++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++.... . ..
T Consensus        11 ~~~~i~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~-~-~~   87 (273)
T 2uzf_A           11 EYDEIKYEF-YEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGG-Y-VG   87 (273)
T ss_dssp             CCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC----------C
T ss_pred             CCceEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccc-c-ch
Confidence            356688887 78999999999999999999999999999999999999999999999833999999999875411 0 01


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      .....  ....+.++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.
T Consensus        88 ~~~~~--~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  165 (273)
T 2uzf_A           88 EDQIP--RLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGH  165 (273)
T ss_dssp             CSSSC--CCTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCH
T ss_pred             hhhHH--HhhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCH
Confidence            11100  0012356678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      + ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++                                    
T Consensus       166 ~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~------------------------------------  207 (273)
T 2uzf_A          166 K-KAREIWYLCRQYN-AQEALDMGLVNTVVPLEKVEDETVQWCK------------------------------------  207 (273)
T ss_dssp             H-HHHHHHHTCCCEE-HHHHHHHTSSSEEECGGGSHHHHHHHHH------------------------------------
T ss_pred             H-HHHHHHHhCCCCC-HHHHHHcCCCccccCHHHHHHHHHHHHH------------------------------------
Confidence            8 9999999999999 9999999999999999888765544433                                    


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHH-H
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEY-R  382 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~-~  382 (414)
                                                          +|++.||.+++.+|++++..           .++.++++.|. .
T Consensus       208 ------------------------------------~la~~~~~a~~~~K~~l~~~-----------~~~~~~l~~e~~~  240 (273)
T 2uzf_A          208 ------------------------------------EIMKHSPTALRFLKAAMNAD-----------TDGLAGLQQMAGD  240 (273)
T ss_dssp             ------------------------------------HHTTSCHHHHHHHHHHHHHH-----------HSHHHHHHHHHHH
T ss_pred             ------------------------------------HHHhCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHH
Confidence                                                49999999999999999942           36889999999 8


Q ss_pred             HHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          383 VALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       383 ~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .+..++.++|++|||++|+  ++|+|+|
T Consensus       241 ~~~~~~~s~d~~egi~af~--ekr~p~f  266 (273)
T 2uzf_A          241 ATLLYYTTDEAKEGRDAFK--EKRDPDF  266 (273)
T ss_dssp             HHHHHHTSHHHHHHHHHHH--TTSCCCC
T ss_pred             HHHHHhcChHHHHHHHHHH--hcCCCCC
Confidence            8888999999999999999  6678876

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=1e-53  Score=413.56  Aligned_cols=253  Identities=19%  Similarity=0.230  Sum_probs=211.6

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      +.++.|.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++ +|||+|.| ++||+|+|++++....    
T Consensus        23 ~~~~~i~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g-~~FcaG~Dl~~~~~~~----   95 (280)
T 2f6q_A           23 MGFETLVVTS-EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNG-DYYSSGNDLTNFTDIP----   95 (280)
T ss_dssp             EECSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEEST-TCSBCCBCC----CCC----
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCC-CCcccCCCHHHHhhcC----
Confidence            3467788887 789999999999999999999999999999999999999 99999997 8999999999875311    


Q ss_pred             CCCc----hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHh
Q 015014          143 NTPL----VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA  218 (414)
Q Consensus       143 ~~~~----~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~  218 (414)
                       ...    ...+.....+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus        96 -~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~  174 (280)
T 2f6q_A           96 -PGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFP  174 (280)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHH
T ss_pred             -cchhhHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHH
Confidence             111    111233345677889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhh
Q 015014          219 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLL  298 (414)
Q Consensus       219 r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  298 (414)
                      +++|.. ++++|++||+.++ |+||+++||||+|||++++.+.+.++++                               
T Consensus       175 r~vG~~-~A~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~-------------------------------  221 (280)
T 2f6q_A          175 KIMSPA-KATEMLIFGKKLT-AGEACAQGLVTEVFPDSTFQKEVWTRLK-------------------------------  221 (280)
T ss_dssp             HHHCHH-HHHHHHTTCCCEE-HHHHHHTTSCSEEECTTTHHHHHHHHHH-------------------------------
T ss_pred             HHhCHH-HHHHHHHcCCCCC-HHHHHHCCCcceEECHHHHHHHHHHHHH-------------------------------
Confidence            999998 9999999999999 9999999999999999988765544433                               


Q ss_pred             HHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHH
Q 015014          299 LPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMK  378 (414)
Q Consensus       299 ~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~  378 (414)
                                                               +|++.||.+++.+|+.++...         ..+++++++
T Consensus       222 -----------------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~~~~~l~  251 (280)
T 2f6q_A          222 -----------------------------------------AFAKLPPNALRISKEVIRKRE---------REKLHAVNA  251 (280)
T ss_dssp             -----------------------------------------HHTTSCHHHHHHHHHHHHGGG---------HHHHHHHHH
T ss_pred             -----------------------------------------HHHhCCHHHHHHHHHHHHhhh---------hcCHHHHHH
Confidence                                                     489999999999999999865         456899999


Q ss_pred             HHHHHHHHhCCCchHHHHHHhhHhCCCCCC
Q 015014          379 YEYRVALRSSLRSDFAEGVRAVLVDKDQVL  408 (414)
Q Consensus       379 ~e~~~~~~~~~~~D~~eGv~afl~dk~~~P  408 (414)
                      .|.+.+..++.++|++||+++|+  ++|+|
T Consensus       252 ~e~~~~~~~~~s~d~~eg~~af~--ekR~p  279 (280)
T 2f6q_A          252 EECNVLQGRWLSDECTNAVVNFL--SRKSK  279 (280)
T ss_dssp             HHHHHHHHHHTSHHHHC-------------
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHH--ccCCC
Confidence            99999999999999999999999  66666

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=6.8e-54  Score=411.34  Aligned_cols=252  Identities=20%  Similarity=0.246  Sum_probs=208.6

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhh-hCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQ-KDR  142 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~-~~~  142 (414)
                      +++.+.++..+++|++|+||||++ |+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..... .+.
T Consensus         4 ~~~~~~~~~~~~~v~~itlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   81 (263)
T 3l3s_A            4 SQDGLLGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPG-RIFCAGHDLKEIGRHRADPDE   81 (263)
T ss_dssp             ----CEEEEESSSEEEEEECSTTT-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCS-SEEECCSCSCCCCC-----CC
T ss_pred             CccceEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcChHHHhhccccccc
Confidence            355677776689999999999999 999999999999999999999999999999998 99999999998764210 011


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                      .......++...+.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|+|++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG  160 (263)
T 3l3s_A           82 GRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIG  160 (263)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSC
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcC
Confidence            112233456666788899999999999999999999999999999999999999999999999999 5789999999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||+.++ |+||+++||||+|||++++.+.+.++++                                   
T Consensus       161 ~~-~A~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~-----------------------------------  203 (263)
T 3l3s_A          161 RR-AVTEMALTGATYD-ADWALAAGLINRILPEAALATHVADLAG-----------------------------------  203 (263)
T ss_dssp             HH-HHHHHHHHCCEEE-HHHHHHHTSSSEECCHHHHHHHHHHHHH-----------------------------------
T ss_pred             HH-HHHHHHHcCCCCC-HHHHHHCCCccEEeCHHHHHHHHHHHHH-----------------------------------
Confidence            98 9999999999999 9999999999999998877655444433                                   


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                                                           +|+++||.+++.+|++++...         ..+++++++.|.+
T Consensus       204 -------------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~l~~e~~  237 (263)
T 3l3s_A          204 -------------------------------------ALAARNQAPLRRGLETLNRHL---------ELPLEQAYALATP  237 (263)
T ss_dssp             -------------------------------------HHHSSCHHHHHHHHHHHHHHT---------TSCHHHHHHHHHH
T ss_pred             -------------------------------------HHHhCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHH
Confidence                                                 499999999999999999887         5789999999999


Q ss_pred             HHHHhCCCchHHHHHHhhH
Q 015014          383 VALRSSLRSDFAEGVRAVL  401 (414)
Q Consensus       383 ~~~~~~~~~D~~eGv~afl  401 (414)
                      .+..++.++|++||++||.
T Consensus       238 ~~~~~~~s~d~~Eg~~Af~  256 (263)
T 3l3s_A          238 VMVEHFMDPGRRHLDWIDE  256 (263)
T ss_dssp             HHHHHHC------------
T ss_pred             HHHHHhCCHHHHHHHHHhh
Confidence            9999999999999999998

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=3.5e-55  Score=419.25  Aligned_cols=249  Identities=17%  Similarity=0.158  Sum_probs=191.3

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      +.++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| +.||+|+|++++....... 
T Consensus         9 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-   85 (258)
T 3lao_A            9 SGPGRVTREQ-RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHG-EHFTAGLDLMELAPKLAAS-   85 (258)
T ss_dssp             CSSCCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCHHHHGGGCBTT-
T ss_pred             CCCCeEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CCeecCcCHHHHhhccchh-
Confidence            4577898987 799999999999999999999999999999999999999999999998 6799999999987632111 


Q ss_pred             CCCchHHHHHHHHHHHHHH-hhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCC
Q 015014          143 NTPLVPKVFTAEYSLICKI-SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP  221 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l-~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~  221 (414)
                      ....    ....++++.++ .++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++
T Consensus        86 ~~~~----~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v  161 (258)
T 3lao_A           86 GFRY----PDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAA  161 (258)
T ss_dssp             BCCC----CTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHH
T ss_pred             hHHH----HHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHh
Confidence            0111    11112334567 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHH
Q 015014          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ  301 (414)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  301 (414)
                      |.. ++++|++||+.++ |+||+++||||+|+|++++.+.+.++++                                  
T Consensus       162 G~~-~A~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~----------------------------------  205 (258)
T 3lao_A          162 GWT-DAMRYILTGDEFD-ADEALRMRLLTEVVEPGEELARALEYAE----------------------------------  205 (258)
T ss_dssp             CHH-HHHHHHTTCCCEE-HHHHHHTTSCSEEECTTCHHHHHHHHHH----------------------------------
T ss_pred             CHH-HHHHHHHcCCCCC-HHHHHHcCCCcEeeChhHHHHHHHHHHH----------------------------------
Confidence            998 9999999999999 9999999999999999998765555443                                  


Q ss_pred             HHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHH
Q 015014          302 ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEY  381 (414)
Q Consensus       302 i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~  381 (414)
                                                            +|+++||.+++.+|+++++..         ..+++++++.|.
T Consensus       206 --------------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~~~~~l~~e~  238 (258)
T 3lao_A          206 --------------------------------------RIARAAPLAVRAALQSAFQGR---------DEGDDAALSRVN  238 (258)
T ss_dssp             --------------------------------------HHHHSCHHHHHHHHHHHHHHT---------C-----------
T ss_pred             --------------------------------------HHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHH
Confidence                                                  489999999999999999886         568999999999


Q ss_pred             HHHHHhCCCchHHHHHHhhH
Q 015014          382 RVALRSSLRSDFAEGVRAVL  401 (414)
Q Consensus       382 ~~~~~~~~~~D~~eGv~afl  401 (414)
                      +.+..++.++|++|||+||+
T Consensus       239 ~~~~~~~~s~d~~eg~~AF~  258 (258)
T 3lao_A          239 ESLAALIGSEDVREGVLAMV  258 (258)
T ss_dssp             --------------------
T ss_pred             HHHHHHhCCHHHHHHHHhhC
Confidence            99999999999999999996

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=8e-54  Score=410.38  Aligned_cols=246  Identities=17%  Similarity=0.265  Sum_probs=210.5

Q ss_pred             cCCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhC
Q 015014           62 AGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (414)
Q Consensus        62 ~~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~  141 (414)
                      +.++..|.++. +++|++||||||+++|+||.+|+.+|.++++.+++| ++|+|||+|.| ++||+|+|++..       
T Consensus        17 ~~~~~~i~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G-~~FcaG~Dl~~~-------   86 (264)
T 3he2_A           17 QGPGSMIGITQ-AEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQG-TAFCAGADLSGD-------   86 (264)
T ss_dssp             -----CEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESS-SCSBCCBCCTTC-------
T ss_pred             CCCCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCC-CCccCCcCCccc-------
Confidence            35677899987 799999999999999999999999999999999988 99999999998 899999999831       


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCC
Q 015014          142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP  221 (414)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~  221 (414)
                         .....+....+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus        87 ---~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v  163 (264)
T 3he2_A           87 ---AFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLV  163 (264)
T ss_dssp             ---TTGGGHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHH
T ss_pred             ---hhhHHHHHHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHh
Confidence               11122445566788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHH
Q 015014          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ  301 (414)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  301 (414)
                      |.. ++++|++||+.|+ |+||+++||||+|++   + +.+.                                      
T Consensus       164 G~~-~A~~llltG~~i~-A~eA~~~GLV~~v~~---~-~~a~--------------------------------------  199 (264)
T 3he2_A          164 GHG-RARAMLLSAEKLT-AEIALHTGMANRIGT---L-ADAQ--------------------------------------  199 (264)
T ss_dssp             CHH-HHHHHHHHCCCEE-HHHHHHHTSCSEECC---H-HHHH--------------------------------------
T ss_pred             CHH-HHHHHHHcCCCcc-HHHHHHCCCeEEEec---H-HHHH--------------------------------------
Confidence            998 9999999999999 999999999999986   2 2222                                      


Q ss_pred             HHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHH
Q 015014          302 ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEY  381 (414)
Q Consensus       302 i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~  381 (414)
                                                    +|++    +|++.||.+++.+|++++...           ++++.++.|.
T Consensus       200 ------------------------------~~A~----~la~~~p~a~~~~K~~l~~~~-----------~~~~~~~~e~  234 (264)
T 3he2_A          200 ------------------------------AWAA----EIARLAPLAIQHAKRVLNDDG-----------AIEEAWPAHK  234 (264)
T ss_dssp             ------------------------------HHHH----HHHTSCHHHHHHHHHHHHTSS-----------CSCCCCHHHH
T ss_pred             ------------------------------HHHH----HHHcCCHHHHHHHHHHHHccC-----------CHHHHHHHHH
Confidence                                          3333    589999999999999999742           3455677888


Q ss_pred             HHHHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          382 RVALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       382 ~~~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      +.+..++.++|++||++||+  ++|+|+|-
T Consensus       235 ~~~~~~~~s~d~~Eg~~AF~--ekR~P~f~  262 (264)
T 3he2_A          235 ELFDKAWGSQDVIEAQVARM--EKRPPKFQ  262 (264)
T ss_dssp             HHHHHHHTSHHHHHHHHHHH--TTSCCCCC
T ss_pred             HHHHHHhCCHHHHHHHHHHh--cCCCCCCC
Confidence            88889999999999999999  78888874

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=7.1e-54  Score=416.18  Aligned_cols=252  Identities=16%  Similarity=0.157  Sum_probs=221.6

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      ++++.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++........
T Consensus         5 ~~~~~v~~~~-~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~   82 (289)
T 3h0u_A            5 ASYETIKARL-DGTVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAA   82 (289)
T ss_dssp             CCCSSEEEEE-ETTEEEEEECCTT-TCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHH
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchh
Confidence            4678899987 7999999999999 7999999999999999999999999999999998666778889999875322110


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCC-eeEecccccCCCCCChhHHHHHhhCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGP  221 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~-a~f~~pe~~~Gl~P~~g~~~~L~r~~  221 (414)
                      ..  ...+....+.++.++.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|++++
T Consensus        83 ~~--~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~v  160 (289)
T 3h0u_A           83 KA--GGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLL  160 (289)
T ss_dssp             TT--SSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHH
T ss_pred             hh--HHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHh
Confidence            00  0011223456777899999999999999999999999999999999998 99999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHH
Q 015014          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ  301 (414)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  301 (414)
                      |.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++                                  
T Consensus       161 G~~-~A~ellltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~lA~----------------------------------  204 (289)
T 3h0u_A          161 GRG-RALEAVLTSSDFD-ADLAERYGWVNRAVPDAELDEFVAGIAA----------------------------------  204 (289)
T ss_dssp             CHH-HHHHHHHHCCCEE-HHHHHHHTSSSEEECHHHHHHHHHHHHH----------------------------------
T ss_pred             CHH-HHHHHHHcCCCCC-HHHHHHCCCccEecCHHHHHHHHHHHHH----------------------------------
Confidence            998 9999999999999 9999999999999998877655544433                                  


Q ss_pred             HHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHH
Q 015014          302 ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEY  381 (414)
Q Consensus       302 i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~  381 (414)
                                                            +|++.||.+++.+|++++...         . +++++++.|.
T Consensus       205 --------------------------------------~la~~~p~a~~~~K~~l~~~~---------~-~l~~~l~~e~  236 (289)
T 3h0u_A          205 --------------------------------------RMSGFPRDALIAAKSAINAIS---------L-PAPAEVRADA  236 (289)
T ss_dssp             --------------------------------------HHHTSCHHHHHHHHHHHHHHH---------S-CCHHHHHHHH
T ss_pred             --------------------------------------HHHhCCHHHHHHHHHHHHhhc---------c-cHHHHHHHHH
Confidence                                                  499999999999999999987         4 7899999999


Q ss_pred             HHHHHhCCCchHHHHHHhhHh
Q 015014          382 RVALRSSLRSDFAEGVRAVLV  402 (414)
Q Consensus       382 ~~~~~~~~~~D~~eGv~afl~  402 (414)
                      +.+..++.++|++|||+||+.
T Consensus       237 ~~~~~~~~s~d~~egi~AFle  257 (289)
T 3h0u_A          237 ALFQQLVRGEKVQQRTAELFK  257 (289)
T ss_dssp             HHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHhC
Confidence            999999999999999999995

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=3.3e-54  Score=411.68  Aligned_cols=246  Identities=22%  Similarity=0.315  Sum_probs=200.1

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      .++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...      
T Consensus         7 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g-~~F~aG~Dl~~~~~~------   78 (256)
T 3pe8_A            7 DSPVLLVDT-TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGAD-PVFCAGLDLKELGDT------   78 (256)
T ss_dssp             -CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEEST-TCSBCCBCTTTC---------
T ss_pred             CCCcEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCccCCcCHHHHhhh------
Confidence            356788886 799999999999999999999999999999999999999999999998 899999999987642      


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                       .       ....+...+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.
T Consensus        79 -~-------~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  150 (256)
T 3pe8_A           79 -T-------ELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGV  150 (256)
T ss_dssp             --------------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCH
T ss_pred             -H-------HHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCH
Confidence             0       01122356889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|++||+.++ |+||+++||||+|||++++.+.+.++++                                    
T Consensus       151 ~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~------------------------------------  192 (256)
T 3pe8_A          151 G-LARRMSLTGDYLS-AQDALRAGLVTEVVAHDDLLTAARRVAA------------------------------------  192 (256)
T ss_dssp             H-HHHHHHHHCCCEE-HHHHHHHTSCSCEECGGGHHHHHHHHHH------------------------------------
T ss_pred             H-HHHHHHHcCCCCC-HHHHHHCCCCeEEeCHhHHHHHHHHHHH------------------------------------
Confidence            8 9999999999999 9999999999999999988766555543                                    


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                          +|++.||.+++.+|++++...         ..+++++++.|.+.
T Consensus       193 ------------------------------------~la~~~~~a~~~~K~~~~~~~---------~~~~~~~l~~e~~~  227 (256)
T 3pe8_A          193 ------------------------------------SIVGNNQKAVRALLDSYHRID---------ALQTGGALWAEAEA  227 (256)
T ss_dssp             ------------------------------------HHHTSCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred             ------------------------------------HHHcCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHHH
Confidence                                                499999999999999999887         56799999999998


Q ss_pred             HHH---hCCCchHHHHHHhhHhCCCCCCCC
Q 015014          384 ALR---SSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       384 ~~~---~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +..   ...++|++||+.+|+  ++++|.|
T Consensus       228 ~~~~~~~~~~~d~~e~~~afl--ek~k~~~  255 (256)
T 3pe8_A          228 ARQWMRSTSGDDIAASRASVI--ERGRSQV  255 (256)
T ss_dssp             HHHHHHHC----------------------
T ss_pred             HHHHhhcccchHHHHHHHHHH--hccCccC
Confidence            654   467999999999999  7888887

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=1.8e-53  Score=405.62  Aligned_cols=244  Identities=20%  Similarity=0.188  Sum_probs=200.9

Q ss_pred             EEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-CCCCCccCCCChhhHHHHhhhCCCCCc
Q 015014           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEG-SGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (414)
Q Consensus        68 v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g-~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (414)
                      |.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+| .| ++||+|+|++++....    ..+.
T Consensus         2 v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g-~~F~aG~Dl~~~~~~~----~~~~   75 (250)
T 2a7k_A            2 VFEEN-SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAE-RSFSAGGDFNEVKQLS----RSED   75 (250)
T ss_dssp             EEEEE-ETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTT-SCSBCBSCHHHHHTC-----CHHH
T ss_pred             eEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCC-CCccCCcCHHHHhhcC----chhh
Confidence            55665 7899999999999999999999999999999999999999999999 76 8999999999875421    1111


Q ss_pred             hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHH
Q 015014          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~  226 (414)
                      ...+....+.++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++ +|++++|.+ +
T Consensus        76 ~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~-~  153 (250)
T 2a7k_A           76 IEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFS-T  153 (250)
T ss_dssp             HHHHHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHH-H
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHH-H
Confidence            12344456678889999999999999999999999999999999999999999999999999999999 999999998 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhc
Q 015014          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF  306 (414)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F  306 (414)
                      +++|++||+.++ |+||+++||||+|+|++++.+.+.+++                                        
T Consensus       154 a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a----------------------------------------  192 (250)
T 2a7k_A          154 MQEIIYQCQSLD-APRCVDYRLVNQVVESSALLDAAITQA----------------------------------------  192 (250)
T ss_dssp             HHHHHHHCCCBC-HHHHHHHTCCSEEECHHHHHHHHHHHH----------------------------------------
T ss_pred             HHHHHHcCCccc-HHHHHHcCCcceecCHHHHHHHHHHHH----------------------------------------
Confidence            999999999999 999999999999999877765444433                                        


Q ss_pred             CCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHH
Q 015014          307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALR  386 (414)
Q Consensus       307 ~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~  386 (414)
                                                      ++|+++||.+++.+|++++...         ..+++++++.|.+.+..
T Consensus       193 --------------------------------~~la~~~~~a~~~~K~~l~~~~---------~~~~~~~l~~e~~~~~~  231 (250)
T 2a7k_A          193 --------------------------------HVMASYPASAFINTKRAVNKPF---------IHLLEQTRDASKAVHKA  231 (250)
T ss_dssp             --------------------------------HHHHTSCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCC-
T ss_pred             --------------------------------HHHHcCCHHHHHHHHHHHHHhh---------hcCHHHHHHHHHHHHHH
Confidence                                            3589999999999999999876         45789999999999988


Q ss_pred             hCCCchHHHHHHhhH
Q 015014          387 SSLRSDFAEGVRAVL  401 (414)
Q Consensus       387 ~~~~~D~~eGv~afl  401 (414)
                      ++.++|++||+++|+
T Consensus       232 ~~~s~d~~eg~~af~  246 (250)
T 2a7k_A          232 AFQARDAQGHFKNVL  246 (250)
T ss_dssp             ---------------
T ss_pred             HhCCHHHHHHHHHHH
Confidence            999999999999999

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=1.6e-53  Score=408.14  Aligned_cols=251  Identities=17%  Similarity=0.230  Sum_probs=214.5

Q ss_pred             EEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCch
Q 015014           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (414)
Q Consensus        68 v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (414)
                      +.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++...     +....
T Consensus         7 v~~~~-~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~-----~~~~~   79 (260)
T 1sg4_A            7 VEPDA-GAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGR-----SPAHY   79 (260)
T ss_dssp             EEEET-TTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSC-----CHHHH
T ss_pred             EEEEe-cCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhcc-----CHHHH
Confidence            44443 6899999999997 69999999999999999999999999999999955899999999987431     11112


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEc--CCeeEecccccCCCCCChhHHHHHhhCCCcHH
Q 015014          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT--EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (414)
Q Consensus       148 ~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~--~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~  225 (414)
                      ..++...+.++.+|.++||||||+|||+|+|||++|+++||||||+  ++++|++||+++|++|++|++++|++++|.. 
T Consensus        80 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-  158 (260)
T 1sg4_A           80 AGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHR-  158 (260)
T ss_dssp             HHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHH-
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHH-
Confidence            2344556678889999999999999999999999999999999999  8999999999999999999999999999998 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhh
Q 015014          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (414)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~  305 (414)
                      ++++|++||+.++ |+||+++||||+|+|++++.+.+.+++.                                      
T Consensus       159 ~a~~llltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~--------------------------------------  199 (260)
T 1sg4_A          159 AAERALQLGLLFP-PAEALQVGIVDQVVPEEQVQSTALSAIA--------------------------------------  199 (260)
T ss_dssp             HHHHHHHHTCCBC-HHHHHHHTSSSEEECGGGHHHHHHHHHH--------------------------------------
T ss_pred             HHHHHHHcCCcCC-HHHHHHcCCCCEecCHHHHHHHHHHHHH--------------------------------------
Confidence            9999999999999 9999999999999998888665544433                                      


Q ss_pred             cCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHH
Q 015014          306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL  385 (414)
Q Consensus       306 F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~  385 (414)
                                                        +|++.||.+++.+|++++...         ..+++++++.|.+.+.
T Consensus       200 ----------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~  236 (260)
T 1sg4_A          200 ----------------------------------QWMAIPDHARQLTKAMMRKAT---------ASRLVTQRDADVQNFV  236 (260)
T ss_dssp             ----------------------------------HHHTSCHHHHHHHHHHHHHHH---------HHHHHTTHHHHHHHHH
T ss_pred             ----------------------------------HHHhCCHHHHHHHHHHHHHhh---------hccHHHHHHHHHHHHH
Confidence                                              489999999999999999876         4468888999999999


Q ss_pred             HhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          386 RSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       386 ~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      .++.++|++||+++|+  ++|+|+.
T Consensus       237 ~~~~s~d~~eg~~af~--ekr~~~~  259 (260)
T 1sg4_A          237 SFISKDSIQKSLQMYL--ERLKEEK  259 (260)
T ss_dssp             HHHTSHHHHHHHTC-----------
T ss_pred             HHhCCHHHHHHHHHHH--HhhcccC
Confidence            9999999999999999  5666653

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=4.8e-52  Score=400.87  Aligned_cols=241  Identities=19%  Similarity=0.203  Sum_probs=214.7

Q ss_pred             ccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCC
Q 015014           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (414)
Q Consensus        66 ~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (414)
                      +.|.++. +++|++|+||||++ |+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....     ..
T Consensus        24 ~~v~~~~-~~~Va~ItlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~-----~~   95 (277)
T 4di1_A           24 EFVSVVA-DQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGH-EIFSAGDDMPELRTLN-----AP   95 (277)
T ss_dssp             CSEEEEE-ETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SCSBCCBCHHHHHTCC-----HH
T ss_pred             ceEEEEE-ECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCEecCcCcccccccC-----hH
Confidence            5688887 79999999999999 999999999999999999999999999999996 8999999999986421     11


Q ss_pred             chHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHH
Q 015014          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (414)
Q Consensus       146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~  225 (414)
                      ....+....+.++.+|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. 
T Consensus        96 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~-  174 (277)
T 4di1_A           96 EADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSS-  174 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHH-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHH-
Confidence            2233555566788899999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhh
Q 015014          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (414)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~  305 (414)
                      ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++.                                     
T Consensus       175 ~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~a~~-------------------------------------  216 (277)
T 4di1_A          175 RAKELVFSGRFFD-AEEALALGLIDDMVAPDDVYDSAVAWARR-------------------------------------  216 (277)
T ss_dssp             HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHHHHHHT-------------------------------------
T ss_pred             HHHHHHHcCCCCC-HHHHHHCCCccEEeChhHHHHHHHHHHHH-------------------------------------
Confidence            9999999999999 99999999999999999887666555444                                     


Q ss_pred             cCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHH
Q 015014          306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL  385 (414)
Q Consensus       306 F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~  385 (414)
                                                         |++.||.+++.+|+++++..         ..+++++++.|...+.
T Consensus       217 -----------------------------------la~~~~~a~~~~K~~l~~~~---------~~~l~~~l~~e~~~~~  252 (277)
T 4di1_A          217 -----------------------------------YLECPPRALAAAKAVINDVF---------ELEATERAAAERRRYV  252 (277)
T ss_dssp             -----------------------------------TTTSCHHHHHHHHHHHHHTT---------TSCHHHHHHHHHHHHH
T ss_pred             -----------------------------------HHcCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHHHHH
Confidence                                               89999999999999999876         5789999999999999


Q ss_pred             HhCCCchHHHHHHhhHhCCCCCCC
Q 015014          386 RSSLRSDFAEGVRAVLVDKDQVLS  409 (414)
Q Consensus       386 ~~~~~~D~~eGv~afl~dk~~~P~  409 (414)
                      .++.++            ++|+|+
T Consensus       253 ~~~~s~------------ekR~P~  264 (277)
T 4di1_A          253 ELFAAG------------QRGPDG  264 (277)
T ss_dssp             HTTSGG------------GC----
T ss_pred             HHhcCc------------ccCCCc
Confidence            998888            678887

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=1.5e-52  Score=397.59  Aligned_cols=239  Identities=17%  Similarity=0.204  Sum_probs=212.5

Q ss_pred             EEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCch
Q 015014           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (414)
Q Consensus        68 v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (414)
                      +.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++......  ...  
T Consensus         5 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~--~~~--   78 (243)
T 2q35_A            5 QLTEL-GNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYG-NYFSSGASKEFLIRKTRG--EVE--   78 (243)
T ss_dssp             EEEEE-ETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TEEECBSCHHHHHHHHTT--CCC--
T ss_pred             EEEEe-eCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCCChHHHhhccch--hhH--
Confidence            34454 789999999999999999999999999999999999999999999997 899999999988653211  111  


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHH
Q 015014          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (414)
Q Consensus       148 ~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a  227 (414)
                            .++++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.+ ++
T Consensus        79 ------~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~a  151 (243)
T 2q35_A           79 ------VLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSE-LA  151 (243)
T ss_dssp             ------CCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHH-HH
T ss_pred             ------HHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHH-HH
Confidence                  13455678999999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcC
Q 015014          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS  307 (414)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~  307 (414)
                      ++|++||+.++ |+||+++||||+|+|++++.+.+.+++                                         
T Consensus       152 ~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a-----------------------------------------  189 (243)
T 2q35_A          152 QEMIYTGENYR-GKELAERGIPFPVVSRQDVLNYAQQLG-----------------------------------------  189 (243)
T ss_dssp             HHHHHHCCCEE-HHHHHHTTCSSCEECHHHHHHHHHHHH-----------------------------------------
T ss_pred             HHHHHcCCCCC-HHHHHHcCCCCEecChhHHHHHHHHHH-----------------------------------------
Confidence            99999999999 999999999999999877765444433                                         


Q ss_pred             CcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHh
Q 015014          308 SEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRS  387 (414)
Q Consensus       308 ~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~  387 (414)
                                                     ++|++.||.+++.+|+++++..         ..+++++++.|.+.+..+
T Consensus       190 -------------------------------~~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~  229 (243)
T 2q35_A          190 -------------------------------QKIAKSPRLSLVALKQHLSADI---------KAKFPEAIKKELEIHQVT  229 (243)
T ss_dssp             -------------------------------HHHTTSCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------HHHHhCCHHHHHHHHHHHHHhh---------hcCHHHHHHHHHHHHHHH
Confidence                                           3599999999999999999876         456899999999999999


Q ss_pred             CCCchHHHHHHhhH
Q 015014          388 SLRSDFAEGVRAVL  401 (414)
Q Consensus       388 ~~~~D~~eGv~afl  401 (414)
                      +.++|++||+++|.
T Consensus       230 ~~s~d~~eg~~a~~  243 (243)
T 2q35_A          230 FNQPEIASRIQQEF  243 (243)
T ss_dssp             HSSTTHHHHHHTTC
T ss_pred             hCCHHHHHHHhhcC
Confidence            99999999999974

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=1.2e-51  Score=393.83  Aligned_cols=240  Identities=16%  Similarity=0.175  Sum_probs=204.8

Q ss_pred             EEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCch
Q 015014           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (414)
Q Consensus        68 v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (414)
                      |.++. +++|++|+||||+++|+||.+|+.+|.++++.+++ +++|+|||+|.| ++||+|+|++++....     ....
T Consensus         9 v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g-~~F~aG~Dl~~~~~~~-----~~~~   80 (254)
T 3isa_A            9 LAIER-RPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAG-RNFSAGFDFTDYETQS-----EGDL   80 (254)
T ss_dssp             EEEEE-CSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEEST-TCSCCCBCCTTCTTSC-----HHHH
T ss_pred             EEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCC-CceeeCcChHHhhccC-----chhH
Confidence            77876 79999999999999999999999999999999987 589999999998 8999999999875421     1111


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHH
Q 015014          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (414)
Q Consensus       148 ~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a  227 (414)
                      ...+.....++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|   ++++|++++|.. ++
T Consensus        81 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~-~A  156 (254)
T 3isa_A           81 LLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGAD-QA  156 (254)
T ss_dssp             HHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHH-HH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHH-HH
Confidence            22334456778899999999999999999999999999999999999999999999999998   378999999998 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcC
Q 015014          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS  307 (414)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~  307 (414)
                      ++|++||+.++ |+||+++||||+|||++++++.+.++++                                        
T Consensus       157 ~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~----------------------------------------  195 (254)
T 3isa_A          157 LSILGSARAFD-ADEARRIGFVRDCAAQAQWPALIDAAAE----------------------------------------  195 (254)
T ss_dssp             HHHHTTTCEEE-HHHHHHTTSSSEECCGGGHHHHHHHHHH----------------------------------------
T ss_pred             HHHHHhCCCCc-HHHHHHCCCccEEeChhHHHHHHHHHHH----------------------------------------
Confidence            99999999999 9999999999999999888765555543                                        


Q ss_pred             CcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHh
Q 015014          308 SEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRS  387 (414)
Q Consensus       308 ~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~  387 (414)
                                                      +|++.||.+++.+|++++.            ..    ++.|...+...
T Consensus       196 --------------------------------~la~~~~~a~~~~K~~l~~------------~~----~~~e~~~~~~~  227 (254)
T 3isa_A          196 --------------------------------AATALDPATRATLHRVLRD------------DH----DDADLAALARS  227 (254)
T ss_dssp             --------------------------------HHTTSCHHHHHHHHHHHSC------------CC----HHHHHHHHHHH
T ss_pred             --------------------------------HHHcCCHHHHHHHHHHHhh------------hh----HHHHHHHHHHH
Confidence                                            4999999999999999853            12    34566777788


Q ss_pred             CCCchHHHHHHhhHhCCCCCCCC
Q 015014          388 SLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       388 ~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +.++|++|||++|+  ++|+|.|
T Consensus       228 ~~s~d~~egi~af~--ekr~p~~  248 (254)
T 3isa_A          228 AAQPGFKARIRDYL--AQPAAEG  248 (254)
T ss_dssp             HHSTTHHHHHHHHH--HC-----
T ss_pred             hCCHHHHHHHHHHH--hcCCCCC
Confidence            89999999999999  6777776

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=2.9e-51  Score=396.56  Aligned_cols=190  Identities=18%  Similarity=0.180  Sum_probs=166.3

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      |.|+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........
T Consensus         6 m~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~   83 (280)
T 1pjh_A            6 RQNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG-RFFSSGADFKGIAKAQGDDT   83 (280)
T ss_dssp             CCBTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCCBCHHHHHC------
T ss_pred             ccCCceEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcCHHHHhhcccccc
Confidence            5567888887 799999999999999999999999999999999999999999999997 89999999998753211110


Q ss_pred             --CCCchH----HHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEc-CCeeEecccccCCCCCChhHHH
Q 015014          143 --NTPLVP----KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-EKTLLAMPENGIGLFPDVGFSY  215 (414)
Q Consensus       143 --~~~~~~----~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~-~~a~f~~pe~~~Gl~P~~g~~~  215 (414)
                        ......    .++...+.++..|.++||||||+|||+|+|||++|+++||||||+ ++++|++||+++|++|++|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~  163 (280)
T 1pjh_A           84 NKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTV  163 (280)
T ss_dssp             -CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHH
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHH
Confidence              011111    122233567788999999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCC
Q 015014          216 IAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG  256 (414)
Q Consensus       216 ~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~  256 (414)
                      +|++++|.+ ++++|++||+.|+ |+||+++|||++|||++
T Consensus       164 ~l~r~vG~~-~A~~llltg~~~~-a~eA~~~GLv~~vv~~~  202 (280)
T 1pjh_A          164 SLPLKFGTN-TTYECLMFNKPFK-YDIMCENGFISKNFNMP  202 (280)
T ss_dssp             HHHHHHCHH-HHHHHHHTTCCEE-HHHHHHTTCCSEECCCC
T ss_pred             HHHHHhCHH-HHHHHHHhCCCCC-HHHHHHCCCcceeeCCc
Confidence            999999998 9999999999999 99999999999999986

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=1.7e-49  Score=388.38  Aligned_cols=254  Identities=14%  Similarity=0.108  Sum_probs=216.7

Q ss_pred             CCCccEEEEE-ecCcEEEEEEcCCCC----CCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEeCCCCCccCCCChh
Q 015014           63 GAEEFVKGNV-HPNGVAVITLDRPKA----LNAMNLDMDIKYKSFLDEWES-----DPRVKCVLIEGSGPRAFCAGMDIK  132 (414)
Q Consensus        63 ~~~~~v~~~~-~~~~V~~Itlnrp~~----~Nal~~~m~~eL~~~l~~~~~-----d~~v~~vVl~g~g~~~FcaG~Dl~  132 (414)
                      ..|+++.+.. .+++|++||||||++    +|+||.+|+.+|.++++.++.     |+++|+|||+|.| ++||+|+|++
T Consensus        27 ~~y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G-~~FcaG~Dl~  105 (305)
T 3m6n_A           27 NIGSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDS-DVFNLGGDLA  105 (305)
T ss_dssp             --CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESS-SSSBCCBCHH
T ss_pred             cCCceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCC-CCeecCcCHH
Confidence            3467776653 378999999999998    559999999999999999987     5899999999987 9999999999


Q ss_pred             hHHHHhhhCCCCCchHHHHHHHHHHHHHH---hhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCC
Q 015014          133 GVVAEIQKDRNTPLVPKVFTAEYSLICKI---SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP  209 (414)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P  209 (414)
                      ++....... .......++...+..+..+   ..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|
T Consensus       106 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p  184 (305)
T 3m6n_A          106 LFCQLIREG-DRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFP  184 (305)
T ss_dssp             HHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCC
T ss_pred             HHHhccccc-cHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCC
Confidence            987643211 1111223444444444444   468999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCC
Q 015014          210 DVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP  289 (414)
Q Consensus       210 ~~g~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~  289 (414)
                      ++|++++|++++|.. ++++|++||+.|+ |+||+++|||++|||++++.+.+.++++                      
T Consensus       185 ~~g~~~~L~r~vG~~-~A~~llltG~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~----------------------  240 (305)
T 3m6n_A          185 GMGAYSFMCQRISAH-LAQKIMLEGNLYS-AEQLLGMGLVDRVVPRGQGVAAVEQVIR----------------------  240 (305)
T ss_dssp             CSSHHHHHTTTSCHH-HHHHHHHHCCEEE-HHHHHHHTSCSEEECTTCHHHHHHHHHH----------------------
T ss_pred             CccHHHHHHHHhcHH-HHHHHHHcCCCCC-HHHHHHCCCCCEecChhHHHHHHHHHHH----------------------
Confidence            999999999999998 9999999999999 9999999999999999998766555543                      


Q ss_pred             CCcchhhhhHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcc
Q 015014          290 EGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNE  369 (414)
Q Consensus       290 ~~~~~~~~~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~  369 (414)
                                                                        +|++ +|.+++.+|++++...         
T Consensus       241 --------------------------------------------------~la~-~p~a~~~~K~~l~~~~---------  260 (305)
T 3m6n_A          241 --------------------------------------------------ESKR-TPHAWAAMQQVREMTT---------  260 (305)
T ss_dssp             --------------------------------------------------HHTT-CHHHHHHHHHHHHTTT---------
T ss_pred             --------------------------------------------------HHhh-ChHHHHHHHHHHHhhh---------
Confidence                                                              3876 8999999999999876         


Q ss_pred             cCCHHHHHHHHHHHHHHhCCCchHHHHHHhhHh
Q 015014          370 LSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLV  402 (414)
Q Consensus       370 ~~~l~~~l~~e~~~~~~~~~~~D~~eGv~afl~  402 (414)
                      ..+++++++.|.+.+..++.++|....+.+.++
T Consensus       261 ~~~l~~~l~~e~~~~~~~~~s~d~~~~~m~~l~  293 (305)
T 3m6n_A          261 AVPLEEMMRITEIWVDTAMQLGEKSLRTMDRLV  293 (305)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            678999999999999999999999999988876

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=3.7e-50  Score=385.07  Aligned_cols=238  Identities=15%  Similarity=0.185  Sum_probs=206.6

Q ss_pred             CCCccEEEEEecC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhC
Q 015014           63 GAEEFVKGNVHPN-GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (414)
Q Consensus        63 ~~~~~v~~~~~~~-~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~  141 (414)
                      ..++.|.++. ++ +|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....   
T Consensus        20 ~~~~~i~~~~-~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~---   94 (263)
T 2j5g_A           20 TKYENLHFHR-DENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSG-DAWMAEIDFPSLGDVT---   94 (263)
T ss_dssp             GSCTTEEEEE-CTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TEEECEECSGGGCCTT---
T ss_pred             CCCCeEEEEE-cCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCcccCcCHHHHhccC---
Confidence            3467788887 67 9999999999999999999999999999999999999999999997 8999999999864310   


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEec-ccccCCCCCChhHHHHHhhC
Q 015014          142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM-PENGIGLFPDVGFSYIAAKG  220 (414)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~-pe~~~Gl~P~~g~~~~L~r~  220 (414)
                       +......++.....++.++.++||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|+|+
T Consensus        95 -~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~  172 (263)
T 2j5g_A           95 -NPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLA  172 (263)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHH
Confidence             11111224444556788899999999999999999 5999999999999999999999 99999999999999999999


Q ss_pred             CCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHH
Q 015014          221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP  300 (414)
Q Consensus       221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  300 (414)
                      +|.+ ++++|++||+.++ |+||+++||||+|||++++.+.+.++++                                 
T Consensus       173 vG~~-~A~~llltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~---------------------------------  217 (263)
T 2j5g_A          173 LGLY-RGRYFLFTQEKLT-AQQAYELNVVHEVLPQSKLMERAWEIAR---------------------------------  217 (263)
T ss_dssp             HHHH-HHHHHHHTTCCEE-HHHHHHTTSCSEEECGGGHHHHHHHHHH---------------------------------
T ss_pred             cCHH-HHHHHHHcCCCCC-HHHHHHCCCccEecChHHHHHHHHHHHH---------------------------------
Confidence            9998 9999999999999 9999999999999999888765544443                                 


Q ss_pred             HHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHH
Q 015014          301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE  380 (414)
Q Consensus       301 ~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e  380 (414)
                                                             +|+++||.+++.+|+++++..         ..+++++++.|
T Consensus       218 ---------------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~l~~e  249 (263)
T 2j5g_A          218 ---------------------------------------TLAKQPTLNLRYTRVALTQRL---------KRLVNEGIGYG  249 (263)
T ss_dssp             ---------------------------------------HHHTSCHHHHHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred             ---------------------------------------HHHhCCHHHHHHHHHHHHhhh---------hccHHHHHHHH
Confidence                                                   489999999999999999876         44677777665


Q ss_pred             HHHHHHhCCCchHHHHHHhhH
Q 015014          381 YRVALRSSLRSDFAEGVRAVL  401 (414)
Q Consensus       381 ~~~~~~~~~~~D~~eGv~afl  401 (414)
                      .           ..|||+||+
T Consensus       250 ~-----------~~eg~~af~  259 (263)
T 2j5g_A          250 L-----------ALEGITATD  259 (263)
T ss_dssp             H-----------HHHHHHHHH
T ss_pred             H-----------HHhhHHHHH
Confidence            4           459999999

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=1.9e-49  Score=392.48  Aligned_cols=260  Identities=18%  Similarity=0.242  Sum_probs=204.8

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      +.+++|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++........
T Consensus        32 ~~~~~i~~e~-~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G-~~FcaG~Dl~~~~~~~~~~~  109 (333)
T 3njd_A           32 DNLKTMTYEV-TDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRG-EGFCAGFDLSAYAEGSSSAG  109 (333)
T ss_dssp             TSCSSEEEEE-ETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEEST-TSSBCCBC------------
T ss_pred             CCCCeEEEEE-ECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecCcCHHHHhhcccccc
Confidence            5688899997 799999999999999999999999999999999999999999999998 89999999999865321100


Q ss_pred             CC---------------------C----chHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCee
Q 015014          143 NT---------------------P----LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTL  197 (414)
Q Consensus       143 ~~---------------------~----~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~  197 (414)
                      ..                     .    ....+......++..|.++||||||+|||+|+|||++|+++||||||+++++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~  189 (333)
T 3njd_A          110 GGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAK  189 (333)
T ss_dssp             ---CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCE
T ss_pred             cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCe
Confidence            00                     0    0112344555677889999999999999999999999999999999999999


Q ss_pred             EecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHH
Q 015014          198 LAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD  277 (414)
Q Consensus       198 f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~  277 (414)
                      |++||+++|++|++|   +|++++|.+ ++++|++||+.|+ |+||+++||||+|||++++.+.+.++++          
T Consensus       190 f~~pe~~lG~~P~~g---~l~~~vG~~-~A~ellltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~lA~----------  254 (333)
T 3njd_A          190 IGYPPMRVWGVPAAG---LWAHRLGDQ-RAKRLLFTGDCIT-GAQAAEWGLAVEAPDPADLDARTERLVE----------  254 (333)
T ss_dssp             EECGGGGTTCCCTTC---CHHHHHCHH-HHHHHHTTCCEEE-HHHHHHTTSSSBCCCGGGHHHHHHHHHH----------
T ss_pred             eechhhceeccCHHH---HHHHHHHHH-HHHHHHhcCCCCC-HHHHHHCCCccEecChHHHHHHHHHHHH----------
Confidence            999999999999887   478999998 9999999999999 9999999999999999988766555544          


Q ss_pred             HHHHHHhhcCCCCCcchhhhhHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHH
Q 015014          278 IVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFS  357 (414)
Q Consensus       278 ~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~  357 (414)
                                                                                    +|+++||.+++.+|++++
T Consensus       255 --------------------------------------------------------------~ia~~~~~al~~~K~~l~  272 (333)
T 3njd_A          255 --------------------------------------------------------------RIAAMPVNQLIMAKLACN  272 (333)
T ss_dssp             --------------------------------------------------------------HHHTSCHHHHHHHHHHHH
T ss_pred             --------------------------------------------------------------HHHcCCHHHHHHHHHHHH
Confidence                                                                          499999999999999999


Q ss_pred             HHHhhcCCCCcccCCHHHH--HHHHHHHHHHh------CCCchHHHHHHhhHhCCCCCCCCC
Q 015014          358 KVASAHGKTDNELSKLSGV--MKYEYRVALRS------SLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       358 ~~~~~~~~~~~~~~~l~~~--l~~e~~~~~~~------~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      +..+        ..++...  +...+......      +......||+++|+  ++|.|.|.
T Consensus       273 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~e~~~f~~~~~~~g~~a~~--ekR~~~f~  324 (333)
T 3njd_A          273 TALL--------NQGVATSQMVSTVFDGIARHTPEGHAFVATAREHGFREAV--RRRDEPMG  324 (333)
T ss_dssp             HHHH--------TTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHCHHHHH--HHHHGGGT
T ss_pred             HHHH--------hcchhHHHHHHHHHHHHHhcChHHHHHHHHhhhHHHHHHH--HhcCCCCC
Confidence            8862        3345443  22222222111      11123378899998  66677664

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=2.3e-49  Score=373.43  Aligned_cols=227  Identities=17%  Similarity=0.139  Sum_probs=201.0

Q ss_pred             ccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCC
Q 015014           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (414)
Q Consensus        66 ~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (414)
                      +.|.++. +++|++||||||+ .|+||.+|+.+|.++++.+++| ++|+|||+|.| ++||+|+|++++...     +..
T Consensus         5 ~~v~~~~-~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g-~~F~aG~Dl~~~~~~-----~~~   75 (233)
T 3r6h_A            5 GPVTYTH-DDAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNH-RVFSGGFDLKVLTSG-----EAK   75 (233)
T ss_dssp             CCEEEEE-ETTEEEEEECCSS-SCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCS-SEEECCSCHHHHC--------CH
T ss_pred             CceEEEE-ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCC-CCccCCcChHHHhcc-----ChH
Confidence            3577886 7999999999996 6999999999999999999987 58999999997 899999999998642     122


Q ss_pred             chHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHH
Q 015014          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (414)
Q Consensus       146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~  225 (414)
                      ....++...++++.++.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. 
T Consensus        76 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~-  154 (233)
T 3r6h_A           76 PAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPS-  154 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHH-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHH-
Confidence            2344666677888999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhh
Q 015014          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (414)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~  305 (414)
                      ++++|++||++++ |+||+++||||+|||++++.+.+.++++                                      
T Consensus       155 ~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~--------------------------------------  195 (233)
T 3r6h_A          155 AYQQAAGLAKTFF-GETALAAGFIDEISLPEVVLSRAEEAAR--------------------------------------  195 (233)
T ss_dssp             HHHHHHHSCCEEC-HHHHHHHTSCSEECCGGGHHHHHHHHHH--------------------------------------
T ss_pred             HHHHHHHcCCcCC-HHHHHHcCCCcEeeCHHHHHHHHHHHHH--------------------------------------
Confidence            9999999999999 9999999999999999888765555443                                      


Q ss_pred             cCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       306 F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                                                        +|++.||.+++.+|+++++..         ..+++++++.|.+.+
T Consensus       196 ----------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~l~~e~~~f  231 (233)
T 3r6h_A          196 ----------------------------------EFAGLNQQAHNATKLRARAEA---------LKAIRAGIDGIEAEF  231 (233)
T ss_dssp             ----------------------------------HHHTSCHHHHHHHHHHTTHHH---------HHHHHHHHHTSHHHH
T ss_pred             ----------------------------------HHHcCCHHHHHHHHHHHHHHH---------HhHHHHHHHHHHHHh
Confidence                                              499999999999999999887         557899998887754

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=5.8e-49  Score=370.38  Aligned_cols=225  Identities=20%  Similarity=0.191  Sum_probs=199.8

Q ss_pred             ccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCC
Q 015014           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (414)
Q Consensus        66 ~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (414)
                      +.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+  ++|||+|.| ++||+|+|++++....      .
T Consensus         6 ~~v~~~~-~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~--~~vvltg~g-~~F~aG~Dl~~~~~~~------~   74 (232)
T 3ot6_A            6 DLVSYHL-DDGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKDR--AIVIVTGQP-GILSGGYDLKVMTSSA------E   74 (232)
T ss_dssp             HHEEEEE-ETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHHTT--CEEEEECBT-EEEECCBCHHHHHHCH------H
T ss_pred             cceEEEE-ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCC--CEEEEECCC-CCccCCcCHHHHhhCh------H
Confidence            3577886 7999999999996 69999999999999999999874  999999997 8999999999986521      1


Q ss_pred             chHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCC-eeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~-a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      ....++...+.++.++.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|+++++++.+|..
T Consensus        75 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~  154 (232)
T 3ot6_A           75 AAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKS  154 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHH
Confidence            22345566677888999999999999999999999999999999999998 89999999999998888899999999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       ++++|++||+.++ |+||+++||||+|||++++.+.+.++++                                     
T Consensus       155 -~a~~l~ltg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~-------------------------------------  195 (232)
T 3ot6_A          155 -AFNRSVINAEMFD-PEGAMAAGFLDKVVSVEELQGAALAVAA-------------------------------------  195 (232)
T ss_dssp             -HHHHHHTSCCEEC-HHHHHHHTSCSEEECTTTHHHHHHHHHH-------------------------------------
T ss_pred             -HHHHHHHcCCccC-HHHHHHCCCCCEecCHHHHHHHHHHHHH-------------------------------------
Confidence             9999999999999 9999999999999999998766555543                                     


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                                                         +|++.||.+++.+|++++...         ..+++++++.|.+.+
T Consensus       196 -----------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~l~~E~~~~  231 (232)
T 3ot6_A          196 -----------------------------------QLKKINMNAHKKTKLKVRKGL---------LDTLDAAIEQDRQHM  231 (232)
T ss_dssp             -----------------------------------HHTTSCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHC
T ss_pred             -----------------------------------HHHcCCHHHHHHHHHHHHHHh---------HhHHHHHHHHHHHhc
Confidence                                               499999999999999999887         567999999988753

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=3.5e-49  Score=377.22  Aligned_cols=236  Identities=15%  Similarity=0.196  Sum_probs=203.8

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      ++.|.++. +++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...     +.
T Consensus        15 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~-----~~   87 (257)
T 1szo_A           15 YENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTG-PSFCNEIDFTSFNLG-----TP   87 (257)
T ss_dssp             CTTEEEEE-ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCEECGGGSCCS-----SH
T ss_pred             CceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CccccCcCchhhhcC-----CH
Confidence            45688887 789999999999999999999999999999999999999999999998 899999999986420     11


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEec-ccccCCCCCChhHHHHHhhCCCc
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM-PENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~-pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      .....++...+.++.++.++||||||+|||+|+ ||++|+++||||||+++++|++ ||+++|++|++|++++|++++|.
T Consensus        88 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~  166 (257)
T 1szo_A           88 HDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGS  166 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCH
Confidence            111223444567788899999999999999999 5999999999999999999999 99999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      + ++++|++||+.++ |+||+++||||+|||++++.+.+.+++                                     
T Consensus       167 ~-~A~~llltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a-------------------------------------  207 (257)
T 1szo_A          167 N-RGRYFLLTGQELD-ARTALDYGAVNEVLSEQELLPRAWELA-------------------------------------  207 (257)
T ss_dssp             H-HHHHHHHTTCEEE-HHHHHHHTSCSEEECHHHHHHHHHHHH-------------------------------------
T ss_pred             H-HHHHHHHcCCCCC-HHHHHHCCCceEEeChHHHHHHHHHHH-------------------------------------
Confidence            8 9999999999999 999999999999999877765444443                                     


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                         ++|++.||.+++.+|+++++..         ..++++.++.|...
T Consensus       208 -----------------------------------~~la~~~~~a~~~~K~~l~~~~---------~~~l~~~l~~~~~~  243 (257)
T 1szo_A          208 -----------------------------------RGIAEKPLLARRYARKVLTRQL---------RRVMEADLSLGLAH  243 (257)
T ss_dssp             -----------------------------------HHHHTSCHHHHHHHHHHHSHHH---------HHHHHHHHHHHHHH
T ss_pred             -----------------------------------HHHHhCCHHHHHHHHHHHHhhh---------hccHHHHHHHHHHH
Confidence                                               3499999999999999999876         45677887776543


Q ss_pred             HHHhCCCchHHHHHHhhHh
Q 015014          384 ALRSSLRSDFAEGVRAVLV  402 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~  402 (414)
                                 ||+.+|-.
T Consensus       244 -----------eg~~a~~~  251 (257)
T 1szo_A          244 -----------EALAAIDL  251 (257)
T ss_dssp             -----------HHHHHHHH
T ss_pred             -----------hhhhhhhc
Confidence                       78888864

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=2.7e-49  Score=382.45  Aligned_cols=238  Identities=18%  Similarity=0.243  Sum_probs=194.8

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      +.++.|.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++........
T Consensus        17 ~~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~~   94 (279)
T 3t3w_A           17 RTEMYIDYDV-SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANG-KHFSAGHDLRGGGPVPDKLT   94 (279)
T ss_dssp             --CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECS-SCSBCCBCCC--------CC
T ss_pred             ccCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CceeeccChHhhhhcccccc
Confidence            4577899987 799999999999999999999999999999999999999999999998 89999999998865321100


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                      ............+.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++++..+ ++++|
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~-~~~~~~~-~~~vG  172 (279)
T 3t3w_A           95 LEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIG-GVEYHGH-TWELG  172 (279)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCS-SCSSCCH-HHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCCC-CchHHHH-HhhcC
Confidence            000011112333457788999999999999999999999999999999999999999999999994 4444443 89999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||++++ |+||+++||||+|||++++.+.+.++++                                   
T Consensus       173 ~~-~A~~llltG~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~-----------------------------------  215 (279)
T 3t3w_A          173 PR-KAKEILFTGRAMT-AEEVAQTGMVNRVVPRDRLDAETRALAG-----------------------------------  215 (279)
T ss_dssp             HH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHHHHHH-----------------------------------
T ss_pred             HH-HHHHHHHcCCccC-HHHHHHCCCCcEeeChHHHHHHHHHHHH-----------------------------------
Confidence            98 9999999999999 9999999999999999988765555543                                   


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                                                           +|++.||.+++.+|+++++..        ...+++++++.++.
T Consensus       216 -------------------------------------~la~~~~~a~~~~K~~l~~~~--------~~~~~~~~~~~~~~  250 (279)
T 3t3w_A          216 -------------------------------------EIAKMPPFALRQAKRAVNQTL--------DVQGFYAAIQSVFD  250 (279)
T ss_dssp             -------------------------------------HHHTSCHHHHHHHHHHHHHHH--------HHTTHHHHHHHHHH
T ss_pred             -------------------------------------HHHcCCHHHHHHHHHHHHHhh--------hcccHHHHHHHHhh
Confidence                                                 499999999999999999876        24578888887776


Q ss_pred             HHHH
Q 015014          383 VALR  386 (414)
Q Consensus       383 ~~~~  386 (414)
                      ....
T Consensus       251 ~~~~  254 (279)
T 3t3w_A          251 IHQT  254 (279)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6544

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=3.2e-48  Score=392.92  Aligned_cols=246  Identities=18%  Similarity=0.179  Sum_probs=202.3

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC--------CCCCccCCCChhhHHH
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS--------GPRAFCAGMDIKGVVA  136 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~--------g~~~FcaG~Dl~~~~~  136 (414)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.        |+++||+|+|++++..
T Consensus       166 ~~~v~~e~-~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~  244 (440)
T 2np9_A          166 MEAVHLER-RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQ  244 (440)
T ss_dssp             CSSEEEEE-ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHT
T ss_pred             CceEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhc
Confidence            45688886 78999999999999999999999999999999999999999999995        5579999999998754


Q ss_pred             HhhhCCCCCc-hHHHHHHHHHHHHHH------------hhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccc
Q 015014          137 EIQKDRNTPL-VPKVFTAEYSLICKI------------SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN  203 (414)
Q Consensus       137 ~~~~~~~~~~-~~~~~~~~~~l~~~l------------~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~  203 (414)
                      ..  ...... ....+.....++..+            ..+||||||+|||+|+|||++|+++||||||+++++|++||+
T Consensus       245 ~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev  322 (440)
T 2np9_A          245 GG--ISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAA  322 (440)
T ss_dssp             TC--CCTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCT
T ss_pred             cC--cchhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchh
Confidence            21  001111 111111122333333            479999999999999999999999999999999999999999


Q ss_pred             cCCCCCChhHHHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 015014          204 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA  283 (414)
Q Consensus       204 ~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~  283 (414)
                      ++|++|++| +++|++++|.+ ++++|++||+.|+ |+||+++||||+|||++++++.+.+++                 
T Consensus       323 ~lGl~P~~g-~~~L~rlvG~~-~A~ellLtG~~i~-A~EA~~~GLV~~Vvp~~eL~~~a~~~A-----------------  382 (440)
T 2np9_A          323 KEGIIPGAA-NLRLGRFAGPR-VSRQVILEGRRIW-AKEPEARLLVDEVVEPDELDAAIERSL-----------------  382 (440)
T ss_dssp             TTCCCCTTH-HHHHHHHHHHH-HHHHHHHHCCCEE-TTSGGGGGTCSEEECHHHHHHHHHHHH-----------------
T ss_pred             ccCcCcchH-HHHHHHHhhHH-HHHHHHHcCCCCC-HHHHHHCCCCcEecChHHHHHHHHHHH-----------------
Confidence            999999887 68999999998 9999999999999 999999999999999877755433332                 


Q ss_pred             hhcCCCCCcchhhhhHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhc
Q 015014          284 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH  363 (414)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~  363 (414)
                                                                                .+.++.+++.+|++++...   
T Consensus       383 ----------------------------------------------------------~~la~~Av~~~K~~l~~~~---  401 (440)
T 2np9_A          383 ----------------------------------------------------------TRLDGDAVLANRRMLNLAD---  401 (440)
T ss_dssp             ----------------------------------------------------------HTTCSHHHHHHHHHHHHHH---
T ss_pred             ----------------------------------------------------------HHhCHHHHHHHHHHHHhhh---
Confidence                                                                      2235689999999999875   


Q ss_pred             CCCCcccCCH---HHHHHHHHHHHHHhCCCchHHHHHHhhH
Q 015014          364 GKTDNELSKL---SGVMKYEYRVALRSSLRSDFAEGVRAVL  401 (414)
Q Consensus       364 ~~~~~~~~~l---~~~l~~e~~~~~~~~~~~D~~eGv~afl  401 (414)
                            . .+   .+.+..|...+..++.++|++|||++|+
T Consensus       402 ------~-~~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFl  435 (440)
T 2np9_A          402 ------E-SPDGFRAYMAEFALMQALRLYGHDVIDKVGRFG  435 (440)
T ss_dssp             ------S-CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC
T ss_pred             ------c-chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence                  2 33   3556667777777889999999999999

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=2.9e-46  Score=402.21  Aligned_cols=267  Identities=21%  Similarity=0.245  Sum_probs=214.2

Q ss_pred             EecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHH
Q 015014           72 VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVF  151 (414)
Q Consensus        72 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  151 (414)
                      ..+|+|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||+| ++||+|+||+++....    ...      
T Consensus        26 ~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aGaDl~~~~~~~----~~~------   93 (742)
T 3zwc_A           26 RLPHSLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGAN-GNFCAGADIHGFSAFT----PGL------   93 (742)
T ss_dssp             ECSTTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCCBCSSSCCSSC----SCS------
T ss_pred             EeeCCEEEEEeCCCc-ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CccccCcChHhhhccC----hhH------
Confidence            347999999999998 5999999999999999999999999999999997 8999999999875421    111      


Q ss_pred             HHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHH
Q 015014          152 TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG  231 (414)
Q Consensus       152 ~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~  231 (414)
                       ....++.+|.+++|||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. +|++|+
T Consensus        94 -~~~~~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~-~A~~l~  171 (742)
T 3zwc_A           94 -ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVP-VALDLI  171 (742)
T ss_dssp             -HHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHH-HHHHHH
T ss_pred             -HHHHHHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHH-HHHHHH
Confidence             123567789999999999999999999999999999999999999999999999999999999999999998 999999


Q ss_pred             hcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcCCccc
Q 015014          232 MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKS  311 (414)
Q Consensus       232 ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s  311 (414)
                      +||+.++ |+||+++||||+|+|++.+ +.+.++++......+...     ...........                 .
T Consensus       172 ltG~~i~-a~eA~~~GLv~~vv~~d~~-~~A~~~A~~ia~~~~~~~-----~~~~~~~~~~~-----------------~  227 (742)
T 3zwc_A          172 TSGKYLS-ADEALRLGILDAVVKSDPV-EEAIKFAQKIIDKPIEPR-----RIFNKPVPSLP-----------------N  227 (742)
T ss_dssp             HHCCCEE-HHHHHHHTSCSEEESSCHH-HHHHHHHHHHTTSCSGGG-----CGGGSCCCCCT-----------------T
T ss_pred             HcCCchh-HHHHHHcCCccEecCchhh-HHHHHHHHHHhcCCchhh-----hhhcccccccc-----------------h
Confidence            9999999 9999999999999997654 456666666443322100     00000000000                 0


Q ss_pred             HHHHHHHHHhccCccccchHHHHHHHHHHHh--ccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHhCC
Q 015014          312 VRQIIEELKKHQSSAETSVAQWADEALQGMG--KGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSL  389 (414)
Q Consensus       312 v~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~--~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~  389 (414)
                      ..                  .+......++.  ...+.+...+++.++.+.         ..+++++++.|.+.+..++.
T Consensus       228 ~~------------------~~~~~~~~~~~k~~~~~~A~~~~~~~v~~~~---------~~~~~~gl~~E~~~F~~l~~  280 (742)
T 3zwc_A          228 MD------------------SVFAEAIAKVRKQYPGVLAPETCVRSIQASV---------KHPYEVGIKEEEKLFMYLRA  280 (742)
T ss_dssp             HH------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH---------HSCHHHHHHHHHHHHHHHHT
T ss_pred             hh------------------hhHHHHHHHHhhhccchhHHHHHHHHHHHHh---------hCCHHHHHHHHHHHHHHhcC
Confidence            00                  11111111122  234568888999999987         67999999999999999999


Q ss_pred             CchHHHHHHhhHhC
Q 015014          390 RSDFAEGVRAVLVD  403 (414)
Q Consensus       390 ~~D~~eGv~afl~d  403 (414)
                      ++|.++++++|+.+
T Consensus       281 s~~~k~~~~aFf~~  294 (742)
T 3zwc_A          281 SGQAKALQYAFFAE  294 (742)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999999954

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=1.5e-46  Score=405.67  Aligned_cols=289  Identities=19%  Similarity=0.188  Sum_probs=223.8

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      |++..+.++..+++|++|||||| +.|+||.+|+.+|.++++.++.|+++|+||||| |+++||+|+|++++......  
T Consensus         4 ~~~~~i~~~~~~~~va~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~--   79 (725)
T 2wtb_A            4 RTKGKTVMEVGGDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKG--   79 (725)
T ss_dssp             ---CEEEEEECTTSEEEEEEECT-TTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC-----------
T ss_pred             CcCCeEEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccch--
Confidence            45566888844789999999999 789999999999999999999999999999999 74599999999987542100  


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G  222 (414)
                      .......+....+.++.+|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG  159 (725)
T 2wtb_A           80 NVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVG  159 (725)
T ss_dssp             ---CCSSSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHC
T ss_pred             hhhhHHHHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcC
Confidence            00000112233445666788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHH
Q 015014          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (414)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i  302 (414)
                      .. ++++|++||+.++ |+||+++||||+|||++++.+.+.++++......              .+. .+.....    
T Consensus       160 ~~-~A~~l~ltG~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~--------------~p~-~~~~~~~----  218 (725)
T 2wtb_A          160 LT-KALEMILTSKPVK-AEEGHSLGLIDAVVPPAELVTTARRWALDIVGRR--------------KPW-VSSVSKT----  218 (725)
T ss_dssp             HH-HHHHHHHHCCCEE-HHHHHHHTSCSEECCTTTHHHHHHHHHHHHHTTS--------------SCC-CCGGGCC----
T ss_pred             HH-HHHHHHHcCCCCC-HHHHHHCCccceEcChhHHHHHHHHHHHHHHhcC--------------CCh-hhhhhhc----
Confidence            98 9999999999999 9999999999999999999888888776522110              000 0000000    


Q ss_pred             HhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       303 ~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                      +   ..+ ......+            +.+++++.+++..++.| +.+.+|++++.+.         ..+++++++.|.+
T Consensus       219 ~---~~~-~~~~~~~------------~~~~a~~~~~~~~~g~p-A~~~~k~~~~~~~---------~~~~~~~l~~E~~  272 (725)
T 2wtb_A          219 D---KLP-PLGEARE------------ILTFAKAQTLKRAPNMK-HPLMCLDAIEVGI---------VSGPRAGLEKEAE  272 (725)
T ss_dssp             T---TSC-CHHHHHH------------HHHHHHHHHHHHCTTCC-HHHHHHHHHHHHH---------HSCHHHHHHHHHH
T ss_pred             c---ccC-ccchHHH------------HHHHHHHHHHHhccCCc-HHHHHHHHHHHhc---------cCCHHHHHHHHHH
Confidence            0   000 0000000            14677778888888855 6677999999887         5689999999999


Q ss_pred             HHHHhCCCchHHHHHHhhHh
Q 015014          383 VALRSSLRSDFAEGVRAVLV  402 (414)
Q Consensus       383 ~~~~~~~~~D~~eGv~afl~  402 (414)
                      .+..++.++|++||+.+|+.
T Consensus       273 ~~~~l~~s~~~~~~~~aF~~  292 (725)
T 2wtb_A          273 VASQVVKLDTTKGLIHVFFS  292 (725)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcchhHHHHHHHhhh
Confidence            99999999999999999993

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=1.5e-45  Score=397.69  Aligned_cols=289  Identities=15%  Similarity=0.159  Sum_probs=228.2

Q ss_pred             ccEEEEEecCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           66 EFVKGNVHPNGVAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        66 ~~v~~~~~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      +.+.++..+++|++||||||+ +.|+||.+|+.+|.++++.++.|+++|+||||| |+++||+|+|++++.....  ...
T Consensus         6 ~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~--~~~   82 (715)
T 1wdk_A            6 KAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFK--LPD   82 (715)
T ss_dssp             SSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTT--SCH
T ss_pred             CeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhccc--CCH
Confidence            457777347899999999998 899999999999999999999999999999999 7459999999999865311  011


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      .....+....+.++.+|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~  162 (715)
T 1wdk_A           83 AELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVD  162 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHH
Confidence            11222444566788899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCC-cHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSED-PHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                       ++++|++||+.++ |+||+++||||+|||++++.+.+.++++...... |.. .+.   ...                 
T Consensus       163 -~A~~l~ltG~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~-~~~---~~~-----------------  219 (715)
T 1wdk_A          163 -NAVEWIASGKENR-AEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYK-AKR---QPK-----------------  219 (715)
T ss_dssp             -HHHHHHHHCCCEE-HHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHH-HHH---GGG-----------------
T ss_pred             -HHHHHHHcCCCCC-HHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCCcc-hhc---ccc-----------------
Confidence             9999999999999 9999999999999999999988888876633221 110 000   000                 


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                       .+....+-..            .......+++.+.+-.++.-.+.+.+|++++.+.         ..+++++++.|.+.
T Consensus       220 -~~p~~~~~~~------------~~~~~~~~k~~~~~~~~g~~~A~~~~k~~v~~~~---------~~~~~~~l~~E~~~  277 (715)
T 1wdk_A          220 -LEKLKLNAIE------------QMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAA---------NFGRDKALEVEAAG  277 (715)
T ss_dssp             -GSCCSCCHHH------------HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCCHHHHHHHHHHH
T ss_pred             -cCccccCchh------------HHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Confidence             0000000000            0000123333444455555668888999999876         56899999999999


Q ss_pred             HHHhCCCchHHHHHHhhHh
Q 015014          384 ALRSSLRSDFAEGVRAVLV  402 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~  402 (414)
                      +..++.++|++||+.+|+.
T Consensus       278 ~~~l~~s~~~~~~~~aF~~  296 (715)
T 1wdk_A          278 FAKLAKTSASNCLIGLFLN  296 (715)
T ss_dssp             HHHHHTSHHHHHHHHHHHH
T ss_pred             HHHHhcchhHHHHHHHHHh
Confidence            9999999999999999993

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=1.6e-42  Score=354.52  Aligned_cols=197  Identities=15%  Similarity=0.181  Sum_probs=173.7

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHhcC-CCceEEEEEe-CCCCCccCCCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPK----------ALNAMNLDMDIKYKSFLDEWESD-PRVKCVLIEG-SGPRAFCAGMD  130 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~----------~~Nal~~~m~~eL~~~l~~~~~d-~~v~~vVl~g-~g~~~FcaG~D  130 (414)
                      ..++++.++. +++|++|+||||+          ++|+||.+|+.+|.++++.++.| +++|+|||+| .| ++||+|+|
T Consensus        18 ~~~~~v~ve~-~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G-~~FcAGaD   95 (556)
T 2w3p_A           18 SQYKHWKLSF-NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKD-RVFCSGAN   95 (556)
T ss_dssp             GGCSSEEEEE-ETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSS-SEEECEEC
T ss_pred             CcCceEEEEe-eCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCC-CcccCCcC
Confidence            3467788887 7999999999998          89999999999999999999999 9999999999 65 89999999


Q ss_pred             hhhHHHHhhhCCCCCchHHHHHHHHHHHHHH----hhCCCcEEEEECCccccchhhhhccCCeEEEcCC--eeEeccccc
Q 015014          131 IKGVVAEIQKDRNTPLVPKVFTAEYSLICKI----SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENG  204 (414)
Q Consensus       131 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~--a~f~~pe~~  204 (414)
                      ++++.....     .....+....+.++..|    .++||||||+|||+|+|||++|+++||||||+++  ++|++||++
T Consensus        96 L~el~~~~~-----~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~  170 (556)
T 2w3p_A           96 IFMLGLSTH-----AWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVP  170 (556)
T ss_dssp             HHHHHHSCH-----HHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHH
T ss_pred             HHHHhhccc-----HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEeccccc
Confidence            998765210     11122334455677788    9999999999999999999999999999999999  999999999


Q ss_pred             -CCCCCChhHHHHHh--hCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHh
Q 015014          205 -IGLFPDVGFSYIAA--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV  268 (414)
Q Consensus       205 -~Gl~P~~g~~~~L~--r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~  268 (414)
                       +|++|++|++++|+  |++|.. ++++|++||+.++ |+||+++||||+|||++++.+.+.++++.
T Consensus       171 ~LGL~Pg~Ggt~rLp~~RlVG~~-rA~eLlLTGr~is-A~EAl~lGLVdeVVp~~eL~~~A~~lA~~  235 (556)
T 2w3p_A          171 LLGVLPGTGGLTRVTDKRKVRHD-RADIFCTVVEGVR-GERAKAWRLVDEVVKPNQFDQAIQARALE  235 (556)
T ss_dssp             HHSSCCTTTHHHHHHHTSCCCHH-HHHHHTTCSSCEE-HHHHHHTTSCSEEECHHHHHHHHHHHHHH
T ss_pred             ccCCCCCccHHHHHHhhccCCHH-HHHHHHHcCCCCC-HHHHHHCCCceEEeChhHHHHHHHHHHHH
Confidence             99999999999999  999998 9999999999999 99999999999999988877666555544

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.85  E-value=1.9e-22  Score=213.32  Aligned_cols=169  Identities=15%  Similarity=0.078  Sum_probs=141.1

Q ss_pred             cCcEEEEEEcCCCCCCC--CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHH
Q 015014           74 PNGVAVITLDRPKALNA--MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVF  151 (414)
Q Consensus        74 ~~~V~~Itlnrp~~~Na--l~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  151 (414)
                      +++|++|+||+|.+.|+  ++..+.++|.++|+.++.|+++|+|||++.+     .|+|+....                
T Consensus       300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s-----pGG~~~~~~----------------  358 (593)
T 3bf0_A          300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS-----PGGSVTASE----------------  358 (593)
T ss_dssp             SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE-----EEECHHHHH----------------
T ss_pred             CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC-----CCCCHHHHH----------------
Confidence            57899999999998888  6889999999999999999999999999975     377876421                


Q ss_pred             HHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccc------------cCCCCCCh--------
Q 015014          152 TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN------------GIGLFPDV--------  211 (414)
Q Consensus       152 ~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~------------~~Gl~P~~--------  211 (414)
                       ..++.+.++..++|||||+|+|.|.|||+.|+++||+|||++++.|+.+++            ++|+.|+.        
T Consensus       359 -~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~  437 (593)
T 3bf0_A          359 -VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLAD  437 (593)
T ss_dssp             -HHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGC
T ss_pred             -HHHHHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccc
Confidence             123455678889999999999999999999999999999999999999885            58887542        


Q ss_pred             -----hHH---------------HHHhhCCCcHHH-----HHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHH
Q 015014          212 -----GFS---------------YIAAKGPGGGSV-----GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALL  266 (414)
Q Consensus       212 -----g~~---------------~~L~r~~G~~~~-----a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~  266 (414)
                           +++               ..+.+.++.. +     +.+++++|+.++ |+||+++||||++++.+++.+.+.+++
T Consensus       438 ~~~~~~~t~~~~~~l~~~l~~~~~~f~~~V~~~-Rg~~~~a~~~l~~G~~~t-a~eA~~~GLVD~v~~~~~~~~~a~~~a  515 (593)
T 3bf0_A          438 VSITRALPPEAQLMMQLSIENGYKRFITLVADA-RHSTPEQIDKIAQGHVWT-GQDAKANGLVDSLGDFDDAVAKAAELA  515 (593)
T ss_dssp             CCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHTTCTTCEEE-HHHHHHHTSCSEECCHHHHHHHHHHHS
T ss_pred             cCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhcCCCcC-HHHHHHCCCCcCccCHHHHHHHHHHHc
Confidence                 222               4566777765 6     889999999999 999999999999998777766555543

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.82  E-value=1e-19  Score=171.60  Aligned_cols=167  Identities=15%  Similarity=0.054  Sum_probs=126.8

Q ss_pred             cCcEEEEEEcCCCCCCCCCHH-------HHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCc
Q 015014           74 PNGVAVITLDRPKALNAMNLD-------MDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (414)
Q Consensus        74 ~~~V~~Itlnrp~~~Nal~~~-------m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (414)
                      ++.|++|+++.+=..+.-...       ..++|.++|+.+..|+++|+|||++.     |.|+|+....           
T Consensus         2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~-----s~Gg~~~~~~-----------   65 (240)
T 3rst_A            2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN-----SPGGGVYESA-----------   65 (240)
T ss_dssp             CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE-----ECCBCHHHHH-----------
T ss_pred             CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec-----CCCCCHHHHH-----------
Confidence            578999999876432210111       35889999999999999999999986     4688886432           


Q ss_pred             hHHHHHHHHHHHHHHhh-CCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecc---------------------ccc
Q 015014          147 VPKVFTAEYSLICKISE-YKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP---------------------ENG  204 (414)
Q Consensus       147 ~~~~~~~~~~l~~~l~~-~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~p---------------------e~~  204 (414)
                            ..++.+..+.. ++|||||+|+|.|.|||+.|+++||+|||++++.|+.+                     +++
T Consensus        66 ------~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~  139 (240)
T 3rst_A           66 ------EIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIK  139 (240)
T ss_dssp             ------HHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEE
T ss_pred             ------HHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEe
Confidence                  12345556777 89999999999999999999999999999999999999                     667


Q ss_pred             CCCCCChhHH--------------------------HHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCH
Q 015014          205 IGLFPDVGFS--------------------------YIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL  258 (414)
Q Consensus       205 ~Gl~P~~g~~--------------------------~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l  258 (414)
                      .|-.++.+..                          ..-.|.+...  ..+.+++|+.++ +++|+++||||++.+.+++
T Consensus       140 ~G~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~--~~~~~~~g~~~~-a~~A~~~GLVD~i~~~~~~  216 (240)
T 3rst_A          140 SGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKA--EVKKIADGRVYD-GRQAKKLNLVDELGFYDDT  216 (240)
T ss_dssp             SSTTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHCSSCEEE-HHHHHHTTSSSEECCHHHH
T ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHhcCCccc-HHHHHHcCCCcccCCHHHH
Confidence            7877776522                          2234555543  334478999998 9999999999999987766


Q ss_pred             HHHHHHH
Q 015014          259 GSLKEAL  265 (414)
Q Consensus       259 ~~~~~~l  265 (414)
                      .+.+.++
T Consensus       217 ~~~~~~~  223 (240)
T 3rst_A          217 ITAMKKD  223 (240)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5544444

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.78  E-value=5.7e-19  Score=164.81  Aligned_cols=148  Identities=16%  Similarity=0.161  Sum_probs=124.7

Q ss_pred             cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHH
Q 015014           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA  153 (414)
Q Consensus        74 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (414)
                      .+.|++|+++     |+++..+.+.|.++|+.++++ ++++|||+..     |.|+|+....                  
T Consensus         7 ~~~V~vI~i~-----g~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in-----spGG~v~~~~------------------   57 (230)
T 3viv_A            7 KNIVYVAQIK-----GQITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADAMM------------------   57 (230)
T ss_dssp             CCEEEEEEEE-----SCBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE-----BSCEEHHHHH------------------
T ss_pred             CCeEEEEEEe-----CEECHHHHHHHHHHHHHHhcC-CCCEEEEEEe-----CCCcCHHHHH------------------
Confidence            4679999999     689999999999999999864 6999999875     6688775432                  


Q ss_pred             HHHHHHHHhhCCCcEEEEE---CCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHH---------------H
Q 015014          154 EYSLICKISEYKKPYISLM---DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS---------------Y  215 (414)
Q Consensus       154 ~~~l~~~l~~~~kPvIAav---nG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~---------------~  215 (414)
                        .++..|..++||||++|   +|.|.|+|+.|+++||+++|+++++|+.+++..++ |+.|.+               .
T Consensus        58 --~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~  134 (230)
T 3viv_A           58 --NIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIK  134 (230)
T ss_dssp             --HHHHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHH
T ss_pred             --HHHHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHH
Confidence              34456778999999999   99999999999999999999999999999987532 444431               2


Q ss_pred             HHhhCCCc--HHHHHHHHhcCCCCCcHHHHHHcCccceecCC
Q 015014          216 IAAKGPGG--GSVGAYLGMTGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       216 ~L~r~~G~--~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      .+++..|.  . .+.+++.++..++ |+||+++||||+|+++
T Consensus       135 ~la~~~Gr~~~-~a~~~~~~~~~lt-A~EAle~GliD~V~~~  174 (230)
T 3viv_A          135 SLAQESGRNAT-IAEEFITKDLSLT-PEEALKYGVIEVVARD  174 (230)
T ss_dssp             HHHHHTTCCHH-HHHHHHHTCCEEC-HHHHHHTTSCSEECSS
T ss_pred             HHHHHhCcCHH-HHHHHHhcCCeec-HHHHHHcCCceEecCC
Confidence            46777886  5 7999999999999 9999999999999975

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.59  E-value=7e-15  Score=136.40  Aligned_cols=141  Identities=12%  Similarity=0.077  Sum_probs=108.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEE
Q 015014           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYI  169 (414)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvI  169 (414)
                      .++..+.+++.+.|..++.++.++.|+|.-     .|.|+++..-                    ..++..|..+++||+
T Consensus        53 ~I~~~~a~~i~~~L~~l~~~~~~k~I~l~I-----nSPGG~v~ag--------------------~~I~~~i~~~~~pV~  107 (218)
T 1y7o_A           53 PVEDNMANSVIAQLLFLDAQDSTKDIYLYV-----NTPGGSVSAG--------------------LAIVDTMNFIKADVQ  107 (218)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTSCEEEEE-----EECCBCHHHH--------------------HHHHHHHHHSSSCEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEE-----ECcCCCHHHH--------------------HHHHHHHHhcCCCEE
Confidence            388999999999999999887788887763     3344554321                    123446777899999


Q ss_pred             EEECCccccchhhhhccCCe--EEEcCCeeEecccccCCCCCChhH------------------HHHHhhCCCcH-HHHH
Q 015014          170 SLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGF------------------SYIAAKGPGGG-SVGA  228 (414)
Q Consensus       170 AavnG~a~GgG~~Lala~D~--ria~~~a~f~~pe~~~Gl~P~~g~------------------~~~L~r~~G~~-~~a~  228 (414)
                      +.++|.|.++|+.|+++||.  |+|.++++|++++.. |.+|..|.                  ...+++..|.. ....
T Consensus       108 t~v~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~  186 (218)
T 1y7o_A          108 TIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVH  186 (218)
T ss_dssp             EEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             EEEccEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            99999999999999999999  999999999999987 44443333                  24566666752 2678


Q ss_pred             HHHhcCCCCCcHHHHHHcCccceecCCCC
Q 015014          229 YLGMTGKRISTPSDALFAGLGTDYVPSGN  257 (414)
Q Consensus       229 ~l~ltG~~i~~a~eA~~~GLv~~vv~~~~  257 (414)
                      +++.+|..++ |+||+++||||+++++++
T Consensus       187 ~~~~~~~~~t-a~EA~e~GLVD~v~~~~~  214 (218)
T 1y7o_A          187 ADAERDNWMS-AQETLEYGFIDEIMANNS  214 (218)
T ss_dssp             HHHHSCCCBC-HHHHHHHTSCSEECCCC-
T ss_pred             HHHhCCCEEc-HHHHHHCCCCcEEcCcCC
Confidence            8899999999 999999999999998765

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.58  E-value=5.2e-15  Score=143.57  Aligned_cols=153  Identities=14%  Similarity=0.123  Sum_probs=121.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |.++..+..-..|+++..+.+.+.++++.+.++ .+.+|+|+++|      |+|+.+....             ...+.+
T Consensus       120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG------Garlqeg~~~-------------l~~~~~  179 (304)
T 2f9y_B          120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG------GARMQEALMS-------------LMQMAK  179 (304)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES------SBCGGGTHHH-------------HHHHHH
T ss_pred             EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC------CcCHHHHHHH-------------HHHHHH
Confidence            666777766678999999999999999999988 79999999976      7788653210             122334


Q ss_pred             HHHHHh---hCCCcEEEEECCccccch-hhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHh
Q 015014          157 LICKIS---EYKKPYISLMDGVTMGFG-IGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM  232 (414)
Q Consensus       157 l~~~l~---~~~kPvIAavnG~a~GgG-~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~l  232 (414)
                      +..++.   ..++|+|++|+|.|.||| +.++++||++||.++|+|++.           +...+.+.+|..       +
T Consensus       180 i~~al~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~-------l  241 (304)
T 2f9y_B          180 TSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK-------L  241 (304)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC-------C
T ss_pred             HHHHHHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc-------C
Confidence            445554   459999999999999999 888999999999999999987           455667777743       5


Q ss_pred             cCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHh
Q 015014          233 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV  268 (414)
Q Consensus       233 tG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~  268 (414)
                      +++..+ |++++++|+||.|++++++.+.+.++++.
T Consensus       242 ~~~~~~-Ae~~~~~Glvd~Vv~~~el~~~l~~ll~~  276 (304)
T 2f9y_B          242 PPGFQR-SEFLIEKGAIDMIVRRPEMRLKLASILAK  276 (304)
T ss_dssp             CTTTTB-HHHHGGGTCCSEECCHHHHHHHHHHHHHH
T ss_pred             CcccCC-HHHHHhcCCccEEeCcHHHHHHHHHHHHH
Confidence            788887 99999999999999987776665555544

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.46  E-value=8.3e-13  Score=129.26  Aligned_cols=153  Identities=12%  Similarity=0.059  Sum_probs=107.9

Q ss_pred             cCcEEEEEEcCCC---------CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           74 PNGVAVITLDRPK---------ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        74 ~~~V~~Itlnrp~---------~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      +|.-..|.-|+|.         ..++++++..+...+.++.+++.. +-+|.|.-.+ +++. |.+..+.          
T Consensus       115 ~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~-~PlI~lvdt~-Ga~~-g~~ae~~----------  181 (327)
T 2f9i_A          115 NGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFN-RPIFTFIDTK-GAYP-GKAAEER----------  181 (327)
T ss_dssp             TTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEES-CSCC-CHHHHHT----------
T ss_pred             CCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCC-CCCc-chhhhhh----------
Confidence            4443444455554         347899999999999999888765 4455554433 2332 3221110          


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      .    .......++.++..+++|+|++|+|.|.|||+.++++||++||.++++|++      +.|.++ +..+.+..+..
T Consensus       182 g----~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg~-a~il~~~~~~a  250 (327)
T 2f9i_A          182 G----QSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSV------ISPEGA-AALLWKDSNLA  250 (327)
T ss_dssp             T----HHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHHH-HHHHSSCGGGH
T ss_pred             h----hHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCCceEee------cCchHH-HHHHHHHhcch
Confidence            0    122334566788999999999999999999999999999999999999885      345444 44555544432


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCC
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      ..+.++    ..++ |++|+++|+||+|+|.
T Consensus       251 ~~A~e~----~~it-A~~a~~~GlVd~VV~e  276 (327)
T 2f9i_A          251 KIAAET----MKIT-AHDIKQLGIIDDVISE  276 (327)
T ss_dssp             HHHHHH----HTCB-HHHHHHTTSSSEEECC
T ss_pred             HHHHHH----cCCC-HHHHHHcCCceEEecC
Confidence            266666    6798 9999999999999983

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.46  E-value=8.9e-13  Score=129.48  Aligned_cols=140  Identities=12%  Similarity=-0.002  Sum_probs=107.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCC
Q 015014           87 ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK  166 (414)
Q Consensus        87 ~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k  166 (414)
                      ..++++++..+...++++.+++.. +-+|.|.-.+ +++. |....+.              ........++.++..+++
T Consensus       151 ~~G~~~~~~~~Ka~r~~~~A~~~~-lPlI~lvDt~-Ga~~-g~~aE~~--------------g~~~~~a~~l~al~~~~v  213 (339)
T 2f9y_A          151 NFGMPAPEGYRKALRLMQMAERFK-MPIITFIDTP-GAYP-GVGAEER--------------GQSEAIARNLREMSRLGV  213 (339)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEES-CSCC-SHHHHHT--------------THHHHHHHHHHHHHTCSS
T ss_pred             hcCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCC-CCcc-chHHHHH--------------HHHHHHHHHHHHHHhCCC
Confidence            347899999999999999888765 4555554443 3333 3221110              022333456678899999


Q ss_pred             cEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHc
Q 015014          167 PYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFA  246 (414)
Q Consensus       167 PvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~  246 (414)
                      |+|++|+|.|.|||+.++++||++||.++++|++      +.|.++++.++.+..+.. .+.++    ..++ |++|+++
T Consensus       214 PvIavV~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~-~Aae~----~~it-A~~a~~~  281 (339)
T 2f9y_A          214 PVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAP-LAAEA----MGII-RPRLKEL  281 (339)
T ss_dssp             CEEEEEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHH-HHHHH----HTCS-HHHHHTT
T ss_pred             CEEEEEeCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHH-HHHHH----cCCC-HHHHHHc
Confidence            9999999999999999999999999999999996      467777777777776665 77777    6798 9999999


Q ss_pred             CccceecCC
Q 015014          247 GLGTDYVPS  255 (414)
Q Consensus       247 GLv~~vv~~  255 (414)
                      |+||+|+|.
T Consensus       282 GlVd~VV~e  290 (339)
T 2f9y_A          282 KLIDSIIPE  290 (339)
T ss_dssp             TSCSCCCCC
T ss_pred             CCeeEEecC
Confidence            999999983

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=98.92  E-value=2.8e-09  Score=97.90  Aligned_cols=138  Identities=12%  Similarity=0.058  Sum_probs=97.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEE--eCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCc
Q 015014           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIE--GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (414)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~v~~vVl~--g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP  167 (414)
                      .++..+.+.+.+.|..++.++.++.|+|.  +.|       +++..                    ...++..|..+++|
T Consensus        35 ~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPG-------G~v~a--------------------~~~I~~~i~~~~~p   87 (208)
T 2cby_A           35 EVNDEIANRLCAQILLLAAEDASKDISLYINSPG-------GSISA--------------------GMAIYDTMVLAPCD   87 (208)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC-------BCHHH--------------------HHHHHHHHHHCSSC
T ss_pred             EECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCC-------CCHHH--------------------HHHHHHHHHhcCCC
Confidence            36788999999999999877767776664  333       33321                    11344567788999


Q ss_pred             EEEEECCccccchhhhhccCCe--EEEcCCeeEecccccCCCCC---ChhH------------HHHHhhCCCcH-HHHHH
Q 015014          168 YISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFP---DVGF------------SYIAAKGPGGG-SVGAY  229 (414)
Q Consensus       168 vIAavnG~a~GgG~~Lala~D~--ria~~~a~f~~pe~~~Gl~P---~~g~------------~~~L~r~~G~~-~~a~~  229 (414)
                      |++.+.|.|.++|..++++||.  |++.+++.+++.+..-|...   +...            ...+.+..|.. ....+
T Consensus        88 V~~~v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~  167 (208)
T 2cby_A           88 IATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEA  167 (208)
T ss_dssp             EEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             EEEEECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence            9999999999999999999999  99999999998776532210   0000            01233333433 13456


Q ss_pred             HHhcCCCCCcHHHHHHcCccceecCC
Q 015014          230 LGMTGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       230 l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      ++..|..++ |+||+++||||++...
T Consensus       168 ~~~~~~~~t-a~eA~e~GLvD~i~~~  192 (208)
T 2cby_A          168 DSDRDRWFT-AAEALEYGFVDHIITR  192 (208)
T ss_dssp             HHHTTCEEE-HHHHHHHTSCSEECSC
T ss_pred             HHhCCcEEc-HHHHHHcCCCcEecCc
Confidence            788899999 9999999999999875

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=98.48  E-value=8.3e-07  Score=80.94  Aligned_cols=141  Identities=11%  Similarity=0.076  Sum_probs=95.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEE--eCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCC
Q 015014           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIE--GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK  166 (414)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~--g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k  166 (414)
                      ..++..+.+.+.+.|..++.++..+.|+|.  +.|       +++..-                    ..++..|..+++
T Consensus        34 g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG-------G~v~~~--------------------~~I~~~i~~~~~   86 (203)
T 3qwd_A           34 SQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG-------GSVTAG--------------------FAIYDTIQHIKP   86 (203)
T ss_dssp             SCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC-------BCHHHH--------------------HHHHHHHHHSSS
T ss_pred             CEECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCC-------CCHHHH--------------------HHHHHHHHHhcC
Confidence            348899999999999999876666665553  433       333211                    124446777899


Q ss_pred             cEEEEECCccccchhhhhccCC--eEEEcCCeeEecccccCCCC---CChhHH------------HHHhhCCCcH-HHHH
Q 015014          167 PYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLF---PDVGFS------------YIAAKGPGGG-SVGA  228 (414)
Q Consensus       167 PvIAavnG~a~GgG~~Lala~D--~ria~~~a~f~~pe~~~Gl~---P~~g~~------------~~L~r~~G~~-~~a~  228 (414)
                      ||++.+.|.|.++|.-|+++||  .|++.+++.|.+....-|..   .+.--.            ..+.+.-|.. ....
T Consensus        87 ~V~t~~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~  166 (203)
T 3qwd_A           87 DVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQ  166 (203)
T ss_dssp             CEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHH
T ss_pred             CcEEEEeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            9999999999999999999999  69999999998866543321   111100            0122222321 1334


Q ss_pred             HHHhcCCCCCcHHHHHHcCccceecCCCC
Q 015014          229 YLGMTGKRISTPSDALFAGLGTDYVPSGN  257 (414)
Q Consensus       229 ~l~ltG~~i~~a~eA~~~GLv~~vv~~~~  257 (414)
                      .++-....++ |+||+++||+|+|+.+..
T Consensus       167 ~~~~~d~~lt-a~EA~e~GliD~I~~~~~  194 (203)
T 3qwd_A          167 KDTDRDNFLT-AEEAKEYGLIDEVMVPET  194 (203)
T ss_dssp             HHHTSCCCEE-HHHHHHHTSCSEECCCCC
T ss_pred             HHhhcCceec-HHHHHHcCCcCEecCCcc
Confidence            4444455677 999999999999998653

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.44  E-value=2.5e-07  Score=83.82  Aligned_cols=140  Identities=14%  Similarity=0.044  Sum_probs=93.9

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEE
Q 015014           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYI  169 (414)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvI  169 (414)
                      .++..+.+.+.+.|..++.++..+.|+|.=.     |-|+++..                    ...++..|...++||+
T Consensus        34 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~In-----SPGG~v~a--------------------~~~I~~~i~~~~~pV~   88 (193)
T 1yg6_A           34 QVEDHMANLIVAQMLFLEAENPEKDIYLYIN-----SPGGVITA--------------------GMSIYDTMQFIKPDVS   88 (193)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCHHH--------------------HHHHHHHHHHSSSCEE
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEE-----CcCCCHHH--------------------HHHHHHHHHhcCCCEE
Confidence            3788899999999998887666777766522     12333321                    1134446778899999


Q ss_pred             EEECCccccchhhhhccCCe--EEEcCCeeEecccccCCCCC---ChhHH------------HHHhhCCCcH-HHHHHHH
Q 015014          170 SLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFP---DVGFS------------YIAAKGPGGG-SVGAYLG  231 (414)
Q Consensus       170 AavnG~a~GgG~~Lala~D~--ria~~~a~f~~pe~~~Gl~P---~~g~~------------~~L~r~~G~~-~~a~~l~  231 (414)
                      +.+.|.|..+|.-++++||.  |++.+++.++......|...   +....            ..+.+.-|.. .....++
T Consensus        89 ~~v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~  168 (193)
T 1yg6_A           89 TICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDT  168 (193)
T ss_dssp             EEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHT
T ss_pred             EEEeeeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence            99999999999999999999  99999999987665433210   00000            0122222332 1233343


Q ss_pred             hcCCCCCcHHHHHHcCccceecCC
Q 015014          232 MTGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       232 ltG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      -.+..++ |+||+++||||+++.+
T Consensus       169 ~~~~~~t-a~eA~~~GliD~i~~~  191 (193)
T 1yg6_A          169 ERDRFLS-APEAVEYGLVDSILTH  191 (193)
T ss_dssp             SSCEEEE-HHHHHHHTSSSEECCC
T ss_pred             cCCeEEc-HHHHHHcCCCCEecCC
Confidence            3344568 9999999999999865

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=98.42  E-value=1.8e-06  Score=79.53  Aligned_cols=138  Identities=11%  Similarity=0.016  Sum_probs=91.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEE--eCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCc
Q 015014           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIE--GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (414)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~v~~vVl~--g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP  167 (414)
                      .++..+.+.+.+.|..++.++. +.|+|.  +.|       +++..                    ...++..|...++|
T Consensus        47 ~I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPG-------Gsv~a--------------------~~~I~~~i~~~~~p   98 (215)
T 2f6i_A           47 EINKKTADELISQLLYLDNINH-NDIKIYINSPG-------GSINE--------------------GLAILDIFNYIKSD   98 (215)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECC-------BCHHH--------------------HHHHHHHHHHSSSC
T ss_pred             EECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCC-------CCHHH--------------------HHHHHHHHHhcCCC
Confidence            3678889999999998876555 666654  433       33321                    11344467788999


Q ss_pred             EEEEECCccccchhhhhccCCe--EEEcCCeeEecccccCCCC---CChhHHH------------HHhhCCCcH-HHHHH
Q 015014          168 YISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLF---PDVGFSY------------IAAKGPGGG-SVGAY  229 (414)
Q Consensus       168 vIAavnG~a~GgG~~Lala~D~--ria~~~a~f~~pe~~~Gl~---P~~g~~~------------~L~r~~G~~-~~a~~  229 (414)
                      |++.+.|.|..+|.-++++||.  |+|.+++.+++.....|..   .+.....            .+.+..|.. ....+
T Consensus        99 V~t~v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~  178 (215)
T 2f6i_A           99 IQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEK  178 (215)
T ss_dssp             EEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             EEEEEeeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence            9999999999999999999999  9999999998766543321   1111000            111111221 13334


Q ss_pred             HHhcCCCCCcHHHHHHcCccceecCCC
Q 015014          230 LGMTGKRISTPSDALFAGLGTDYVPSG  256 (414)
Q Consensus       230 l~ltG~~i~~a~eA~~~GLv~~vv~~~  256 (414)
                      ++-.+..++ |+||+++||||++.+..
T Consensus       179 ~~~~~~~lt-a~eA~e~GLiD~I~~~~  204 (215)
T 2f6i_A          179 DSDRDYYMN-ALEAKQYGIIDEVIETK  204 (215)
T ss_dssp             HHHTTCEEC-HHHHHHHTSCSEECCCS
T ss_pred             HHhCCeecC-HHHHHHCCCCCEecCCc
Confidence            443344568 99999999999999753

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=98.33  E-value=2.6e-06  Score=80.97  Aligned_cols=147  Identities=13%  Similarity=0.042  Sum_probs=96.7

Q ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHH
Q 015014           79 VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLI  158 (414)
Q Consensus        79 ~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~  158 (414)
                      +|.++.+     ++..+.+.+...|..++.++..+.|+|.=.     |-|+++..                    ...++
T Consensus        84 II~l~G~-----I~d~~a~~iiaqL~~l~~ed~~k~I~L~IN-----SPGGsV~a--------------------g~aIy  133 (277)
T 1tg6_A           84 IVCVMGP-----IDDSVASLVIAQLLFLQSESNKKPIHMYIN-----SPGGVVTA--------------------GLAIY  133 (277)
T ss_dssp             EEEEESS-----BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCHHH--------------------HHHHH
T ss_pred             EEEEcCE-----ECHHHHHHHHHHHHHHHhcCCCCCEEEEEE-----CCCCCHHH--------------------HHHHH
Confidence            3555543     788899999999998876544677766522     12233321                    11234


Q ss_pred             HHHhhCCCcEEEEECCccccchhhhhccCCe--EEEcCCeeEecccccCCCCCChhHHH---------------HHhhCC
Q 015014          159 CKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAKGP  221 (414)
Q Consensus       159 ~~l~~~~kPvIAavnG~a~GgG~~Lala~D~--ria~~~a~f~~pe~~~Gl~P~~g~~~---------------~L~r~~  221 (414)
                      ..|...++||++.+.|.|..+|.-|+++||.  |++.+++.++.....-|......-..               .+.+.-
T Consensus       134 d~I~~~k~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~t  213 (277)
T 1tg6_A          134 DTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHT  213 (277)
T ss_dssp             HHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEEEccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4677788999999999999999999999999  99999999987665433211100000               111222


Q ss_pred             CcH-HHHHHHHhcCCCCCcHHHHHHcCccceecCCC
Q 015014          222 GGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSG  256 (414)
Q Consensus       222 G~~-~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~  256 (414)
                      |.. .....++-.+..++ |+||+++||||+++...
T Consensus       214 G~~~e~i~~~~drd~~lt-a~EAle~GLID~I~~~~  248 (277)
T 1tg6_A          214 KQSLQVIESAMERDRYMS-PMEAQEFGILDKVLVHP  248 (277)
T ss_dssp             CCCHHHHHHHHSSCEEEC-HHHHHHHTSCSEECSSC
T ss_pred             CCCHHHHHHHHhcCcccC-HHHHHHCCCCCEecCcc
Confidence            321 13344444445678 99999999999999754

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=98.21  E-value=2e-06  Score=78.27  Aligned_cols=140  Identities=13%  Similarity=0.004  Sum_probs=92.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcE
Q 015014           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (414)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPv  168 (414)
                      ..++..+.+.+...|..++.++..+.|+|.=.     |-|+++..                    ...++..+...++||
T Consensus        37 g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v~~--------------------~~~I~~~i~~~~~~v   91 (201)
T 3p2l_A           37 GEVNDHSANLVIAQLLFLESEDPDKDIYFYIN-----SPGGMVTA--------------------GMGVYDTMQFIKPDV   91 (201)
T ss_dssp             SCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCHHH--------------------HHHHHHHHHHSSSCE
T ss_pred             CEECHHHHHHHHHHHHHHHhcCCCCCEEEEEE-----CCCCCHHH--------------------HHHHHHHHHHhCCCe
Confidence            34788999999999999887665666665422     12333321                    113444677889999


Q ss_pred             EEEECCccccchhhhhccCCe--EEEcCCeeEecccccCCCCCChhHH----------------HHHhhCCCcH-HHHHH
Q 015014          169 ISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFS----------------YIAAKGPGGG-SVGAY  229 (414)
Q Consensus       169 IAavnG~a~GgG~~Lala~D~--ria~~~a~f~~pe~~~Gl~P~~g~~----------------~~L~r~~G~~-~~a~~  229 (414)
                      ++.+.|.|.++|.-+++++|.  |++.+++.+.+....-|.. +...-                ..+.+.-|.. ....+
T Consensus        92 ~t~~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~~-G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~  170 (201)
T 3p2l_A           92 STICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFR-GQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVK  170 (201)
T ss_dssp             EEEEEEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             EEEEcCEehhHHHHHHHcCccCCEEEcCCCeEEEeccccccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence            999999999999999999998  9999999998776542211 10000                0112222322 12333


Q ss_pred             HHhcCCCCCcHHHHHHcCccceecCC
Q 015014          230 LGMTGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       230 l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      ++-....++ |+||+++||||+|+++
T Consensus       171 ~~~~~~~lt-a~EA~e~GliD~I~~~  195 (201)
T 3p2l_A          171 DTDRDNFMM-ADEAKAYGLIDHVIES  195 (201)
T ss_dssp             HTSSCEEEE-HHHHHHHTSCSEECCC
T ss_pred             HhhcCeeec-HHHHHHcCCccEecCC
Confidence            333333467 9999999999999975

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=97.89  E-value=0.0001  Score=66.92  Aligned_cols=146  Identities=14%  Similarity=0.114  Sum_probs=92.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEE--EEEeCCCCC----ccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHh
Q 015014           89 NAMNLDMDIKYKSFLDEWESDPRVKCV--LIEGSGPRA----FCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKIS  162 (414)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~v~~v--Vl~g~g~~~----FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  162 (414)
                      -.++.++.+.+...|..++.++..+-|  .|-+.| ..    .-.-+|+.                    ....++..|.
T Consensus        35 ~~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG-~~~~~~~~~~G~v~--------------------aglaIyd~m~   93 (205)
T 4gm2_A           35 SPIYPHISEQIISQLLYLEYESKRKPIHLYINSTG-DIDNNKIINLNGIT--------------------DVISIVDVIN   93 (205)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECT-TEETTEESCTTHHH--------------------HHHHHHHHHH
T ss_pred             CEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCC-CCCcCCCCCCCCHH--------------------HHHHHHHHHH
Confidence            348899999999999988754323322  334444 00    00002221                    2234555777


Q ss_pred             hCCCcEEEEECCccccchhhhhccCC--eEEEcCCeeEecccccCCC----CCChhHHH------------HHhhCCCcH
Q 015014          163 EYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGL----FPDVGFSY------------IAAKGPGGG  224 (414)
Q Consensus       163 ~~~kPvIAavnG~a~GgG~~Lala~D--~ria~~~a~f~~pe~~~Gl----~P~~g~~~------------~L~r~~G~~  224 (414)
                      ..+.||...+-|.|.+.|..|++++|  .|++.+++++.+.....|.    ..+.--..            .+.+.-|..
T Consensus        94 ~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~  173 (205)
T 4gm2_A           94 YISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKD  173 (205)
T ss_dssp             HSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hcCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            88999999999999999999999999  5999999999876665443    12211100            112222221


Q ss_pred             -HHHHHHHhcCCCCCcHHHHHHcCccceecCCC
Q 015014          225 -SVGAYLGMTGKRISTPSDALFAGLGTDYVPSG  256 (414)
Q Consensus       225 -~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~  256 (414)
                       ....+++-...-++ |+||+++||+|+|++.+
T Consensus       174 ~e~I~~~m~rd~~ms-a~EA~eyGlID~V~~~e  205 (205)
T 4gm2_A          174 TNVISNVLERDKYFN-ADEAVDFKLIDHILEKE  205 (205)
T ss_dssp             HHHHHHHTTSCEEEE-HHHHHHTTSCSEECCC-
T ss_pred             HHHHHHHhcCCcccC-HHHHHHcCCccEeecCC
Confidence             12233344444587 99999999999999753

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.78  E-value=7.6e-05  Score=78.07  Aligned_cols=156  Identities=14%  Similarity=0.018  Sum_probs=103.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |.++-.+..-..-++.....+.+.++++.+.+.. +-+|.|.-+      +|+.+.+-.....   +.......+    .
T Consensus       107 v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~~-lPvI~l~dS------gGArlqe~~~~l~---~~~~~g~i~----~  172 (587)
T 1pix_A          107 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLNC------SGVKFDEQEKVYP---NRRGGGTPF----F  172 (587)
T ss_dssp             EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEECC------CEECGGGHHHHSS---STTSTTHHH----H
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC------CCCCccccchhcc---ccccHHHHH----H
Confidence            5555555544556888899999999999888764 456666543      3555554322110   001111122    2


Q ss_pred             HHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCC-eeEec--ccccCCCCCChhHHHHHhhCCCcHHHHHHHH-h
Q 015014          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAM--PENGIGLFPDVGFSYIAAKGPGGGSVGAYLG-M  232 (414)
Q Consensus       157 l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~-a~f~~--pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~-l  232 (414)
                      .+..+....+|+|++|.|.|.|||... ..||++|++++ +.+++  |++--++-|        .-.++.. ++.+++ .
T Consensus       173 ~~~~ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~vi~~~~~--------~~~~d~~-~A~el~~~  242 (587)
T 1pix_A          173 RNAELNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGIMGGMNP--------KGHVDLE-YANEIADM  242 (587)
T ss_dssp             HHHHHHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTTCCSCCS--------SSSCCHH-HHHHHHHH
T ss_pred             HHHHHhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHHHHhhhcc--------ccccchh-HHHHHHHH
Confidence            345677889999999999999999999 89999998875 88877  222111111        1125665 999999 8


Q ss_pred             cCCCCCcHH-----HHH--HcCccceecCCCC
Q 015014          233 TGKRISTPS-----DAL--FAGLGTDYVPSGN  257 (414)
Q Consensus       233 tG~~i~~a~-----eA~--~~GLv~~vv~~~~  257 (414)
                      ||+.++ ++     +.+  +.|++|.++++++
T Consensus       243 tge~v~-~e~lgga~~h~~~~GvvD~vv~~e~  273 (587)
T 1pix_A          243 VDRTGK-TEPPGAVDIHYTETGFMREVYASEE  273 (587)
T ss_dssp             HHTTCC-CCCSSBHHHHTTTSCCSCEEESSHH
T ss_pred             hCCccC-hhhcccHHHHHhhcCceeEecCCHH
Confidence            988775 44     333  6999999998755

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=97.72  E-value=0.00017  Score=75.94  Aligned_cols=87  Identities=5%  Similarity=-0.022  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCC-CChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcEEEEEC
Q 015014           95 MDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAG-MDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD  173 (414)
Q Consensus        95 m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG-~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavn  173 (414)
                      ...++.+.|+.+..|+.++.|+|.-..+     | +++....                 ..++.+..+....|||||.++
T Consensus        71 ~~~~i~~~L~~a~~d~~ik~I~L~insp-----GgG~v~~~~-----------------~I~~~i~~~k~~gkpvva~~~  128 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNITGIVMDLKNF-----AGGDQPSMQ-----------------YIGKALKEFRDSGKPVYAVGE  128 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCCCEEEECTEE-----EECCHHHHH-----------------HHHHHHHHHHHTTCCEEEEES
T ss_pred             CHHHHHHHHHHHHhCCCceEEEEEeCCC-----CCCcHHHHH-----------------HHHHHHHHHHhcCCeEEEEEc
Confidence            4677888999999999999999986432     3 5554322                 233444556666799999988


Q ss_pred             CccccchhhhhccCCeEEEcCCeeEeccccc
Q 015014          174 GVTMGFGIGISGHGRYRIVTEKTLLAMPENG  204 (414)
Q Consensus       174 G~a~GgG~~Lala~D~ria~~~a~f~~pe~~  204 (414)
                      + +.-+|.-|+++||-+++.+.+.++...+.
T Consensus       129 ~-aas~~y~lAsaad~i~~~P~~~vg~~g~~  158 (593)
T 3bf0_A          129 N-YSQGQYYLASFANKIWLSPQGVVDLHGFA  158 (593)
T ss_dssp             C-EEHHHHHHHTTSSEEEECTTCCEECCCCB
T ss_pred             c-chhHHHHHHHhCCEEEECCCceEEEeccc
Confidence            7 56688999999999999999988876654

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.69  E-value=0.0018  Score=61.85  Aligned_cols=151  Identities=15%  Similarity=0.103  Sum_probs=96.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |+++..|..-..-+++....+.+.++++.+.+.. +-+|.|.-+| ++     -..+-..        .  .........
T Consensus       123 V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~-lPlI~l~dsg-Ga-----r~qEGi~--------s--l~q~aki~~  185 (285)
T 2f9i_B          123 FGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENR-LPFILFSASG-GA-----RMQEGII--------S--LMQMGKTSV  185 (285)
T ss_dssp             EEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEEC-SC-----CGGGHHH--------H--HHHHHHHHH
T ss_pred             EEEEEEccccccCcCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC-Cc-----chhhhhh--------h--HhHHHHHHH
Confidence            5555554433456899999999999999888764 5677776554 33     1222000        0  001122334


Q ss_pred             HHHHHhhCCCcEEEEECCccccchhhh-hccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCC
Q 015014          157 LICKISEYKKPYISLMDGVTMGFGIGI-SGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (414)
Q Consensus       157 l~~~l~~~~kPvIAavnG~a~GgG~~L-ala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~  235 (414)
                      .+.++.....|.|+.|-|.|.||+... ++.+|+++|.+++.+++-       .+-+....+    +.. .       -+
T Consensus       186 ~l~~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~a-------GP~vi~~~~----~~~-~-------~e  246 (285)
T 2f9i_B          186 SLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFA-------GRRVIEQTI----NEK-L-------PD  246 (285)
T ss_dssp             HHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-------CHHHHHHHH----TSC-C-------CT
T ss_pred             HHHHHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEc-------CHHHHHHHh----ccc-c-------hH
Confidence            556677789999999999999998655 789999999888877652       111112222    211 1       13


Q ss_pred             CCCcHHHHHHcCccceecCCCCHHHHHH
Q 015014          236 RISTPSDALFAGLGTDYVPSGNLGSLKE  263 (414)
Q Consensus       236 ~i~~a~eA~~~GLv~~vv~~~~l~~~~~  263 (414)
                      .+.+|+.+.+.|++|.|++++++.+...
T Consensus       247 ~~~~Ae~~~~~G~iD~Iv~~~e~r~~l~  274 (285)
T 2f9i_B          247 DFQTAEFLLEHGQLDKVVHRNDMRQTLS  274 (285)
T ss_dssp             TTTBHHHHHHTTCCSEECCGGGHHHHHH
T ss_pred             hHhhHHHHHhcCCccEEeChHHHHHHHH
Confidence            3444788889999999999877654333

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.55  E-value=0.0018  Score=66.86  Aligned_cols=147  Identities=19%  Similarity=0.155  Sum_probs=95.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |.++..+-.-..-++.....+.+.++++.+.+.. +-+|.|.-+|      |+.+.+-..             .+..+-+
T Consensus        99 v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~-lP~I~l~dSg------GaRmqEg~~-------------~l~~~~~  158 (530)
T 3iav_A           99 VAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTG-CPVVGINDSG------GARIQEGVA-------------SLGAYGE  158 (530)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------SBCGGGTHH-------------HHHHHHH
T ss_pred             EEEEEECCCcceEeccHHHHHHHHHHHHHHHHcC-CCEEEEEcCC------Ccchhhhhh-------------hHHHHHH
Confidence            4444444444567899999999999999888763 5667666544      333332111             1111222


Q ss_pred             HHHHHhhC--CCcEEEEECCccccchhhhhccCCeEEEcCC-eeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhc
Q 015014          157 LICKISEY--KKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT  233 (414)
Q Consensus       157 l~~~l~~~--~kPvIAavnG~a~GgG~~Lala~D~ria~~~-a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~lt  233 (414)
                      .+.++..+  ..|+|++|.|.|.|||......||++|++++ +.+++-                    |+.  ..+ ..|
T Consensus       159 i~~~~~~~s~~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a--------------------GP~--vi~-~~~  215 (530)
T 3iav_A          159 IFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPD--VIK-TVT  215 (530)
T ss_dssp             HHHHHHHTTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHH--HHH-HHH
T ss_pred             HHHHHHHHcCCCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec--------------------CHH--HHH-HHh
Confidence            22222222  3999999999999999999999999999885 877762                    322  112 257


Q ss_pred             CCCCCcHHHH-------HHcCccceecCCCC-HHHHHHHHHH
Q 015014          234 GKRISTPSDA-------LFAGLGTDYVPSGN-LGSLKEALLA  267 (414)
Q Consensus       234 G~~i~~a~eA-------~~~GLv~~vv~~~~-l~~~~~~l~~  267 (414)
                      |+.++ +++.       ...|++|.++++|+ ....+..+..
T Consensus       216 ge~v~-~e~LGGa~~h~~~sGv~d~va~de~~a~~~~r~~ls  256 (530)
T 3iav_A          216 GEDVG-FEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLS  256 (530)
T ss_dssp             CCCCC-HHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHH
T ss_pred             CCcCC-hhhcchHHHHHhccCceeEEecChHHHHHHHHHHHH
Confidence            88888 7765       58999999998753 4444444443

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.43  E-value=0.0019  Score=66.74  Aligned_cols=136  Identities=15%  Similarity=0.050  Sum_probs=88.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |.++..+-.=..-++.....+.+..+++.+.+. .+-+|.|..+|      |+.+.+-...             +..+-+
T Consensus        93 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~~P~I~l~~SG------GaRmqeg~~s-------------l~~~~~  152 (522)
T 1x0u_A           93 VFAYAQDFTVLGGSLGETHANKIVRAYELALKV-GAPVVGINDSG------GARIQEGALS-------------LEGYGA  152 (522)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC------SBCGGGTHHH-------------HHHHHH
T ss_pred             EEEEEecCceeCccccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC------CCChhHHHHH-------------HHHHHH
Confidence            444444444456789999999999999988875 45677776544      4555432211             111112


Q ss_pred             HHHHHh--hCCCcEEEEECCccccchhhhhccCCeEEEcCC-e-eEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHh
Q 015014          157 LICKIS--EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-T-LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM  232 (414)
Q Consensus       157 l~~~l~--~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~-a-~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~l  232 (414)
                      .+.++.  .-..|+|+++.|+|.||+......||++|+.++ + .+++                    -|+.  ..+- .
T Consensus       153 i~~~~~~~s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~--------------------aGP~--vI~~-~  209 (522)
T 1x0u_A          153 VFKMNVMASGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFV--------------------TGPE--ITKV-V  209 (522)
T ss_dssp             HHHHHHHHTTTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEES--------------------SCHH--HHHH-T
T ss_pred             HHHHHHHhCCCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEe--------------------cCHH--HHHH-H
Confidence            222222  345999999999999999999999999999998 7 6655                    1211  1111 4


Q ss_pred             cCCCCCcHH-----HHH--HcCccceecCCC
Q 015014          233 TGKRISTPS-----DAL--FAGLGTDYVPSG  256 (414)
Q Consensus       233 tG~~i~~a~-----eA~--~~GLv~~vv~~~  256 (414)
                      ||+.++ .+     |.+  +.|++|.+++++
T Consensus       210 ~ge~~~-~e~lggae~~~~~~G~~d~vv~~~  239 (522)
T 1x0u_A          210 LGEEVS-FQDLGGAVVHATKSGVVHFMVDSE  239 (522)
T ss_dssp             TCCCCC-HHHHHBHHHHHHTTCCCSEEESCH
T ss_pred             hCCcCC-hhhcchHHHHhhcCceeEEEeCCH
Confidence            566666 43     333  699999999863

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.37  E-value=0.0034  Score=64.82  Aligned_cols=137  Identities=14%  Similarity=0.105  Sum_probs=91.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |.++..+..-..-++.....+.+.++++.+.+.. +-+|.|.-+|      |+.+.+-..             .+..+-+
T Consensus       107 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lPvI~l~dSG------GARmqeg~~-------------sl~~~~~  166 (531)
T 3n6r_B          107 VYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNG-APVIGINDSG------GARIQEGVD-------------SLAGYGE  166 (531)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------CBCGGGTHH-------------HHHHHHH
T ss_pred             EEEEEECCCcccccccHHHHHHHHHHHHHHHHcC-CCEEEEeCCC------ccccCcccc-------------hhhhHHH
Confidence            4444444444567899999999999999887754 5566665544      334433111             0111111


Q ss_pred             HHHHHh--hCCCcEEEEECCccccchhhhhccCCeEEEcCC-eeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhc
Q 015014          157 LICKIS--EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT  233 (414)
Q Consensus       157 l~~~l~--~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~-a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~lt  233 (414)
                      .+.++.  .-..|+|++|.|.|.|||.-....||++|+.++ +.+++                    -|+.  ..+ ..|
T Consensus       167 i~~~~~~~s~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~--------------------aGP~--vI~-~~~  223 (531)
T 3n6r_B          167 VFQRNIMASGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFV--------------------TGPD--VVK-TVT  223 (531)
T ss_dssp             HHHHHHHTTTTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBS--------------------SCHH--HHH-HHH
T ss_pred             HHHHHHHHhCCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEee--------------------cCHH--HHH-HHh
Confidence            222221  245999999999999999999888999999985 66554                    1322  222 257


Q ss_pred             CCCCCcHHHH-------HHcCccceecCCCC
Q 015014          234 GKRISTPSDA-------LFAGLGTDYVPSGN  257 (414)
Q Consensus       234 G~~i~~a~eA-------~~~GLv~~vv~~~~  257 (414)
                      |+.++ +++.       .+.|++|.++++|+
T Consensus       224 ge~v~-~E~LGGa~~h~~~sG~~d~v~~~e~  253 (531)
T 3n6r_B          224 NEQVS-AEELGGATTHTRKSSVADAAFENDV  253 (531)
T ss_dssp             CCCCC-HHHHHBHHHHHHTTSCCSEEESSHH
T ss_pred             CCccC-hhhcchHHHHhhccCcceEEeCCHH
Confidence            89998 8888       88999999998743

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.33  E-value=0.0026  Score=65.67  Aligned_cols=147  Identities=14%  Similarity=0.106  Sum_probs=94.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |.++..+-.=..-++.....+.+..+++.+.+.. +-+|.|..+|      |+.+.+-...             +..+-+
T Consensus        97 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lP~I~l~~SG------GARmqeg~~s-------------l~~~~~  156 (523)
T 1on3_A           97 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTG-TPFLFFYDSG------GARIQEGIDS-------------LSGYGK  156 (523)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEEEC------SBCGGGTHHH-------------HHHHHH
T ss_pred             EEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHcC-CCEEEEEcCC------CCChhhHHHH-------------HHHHHH
Confidence            4555555444567899999999999999888754 5666666543      4445432211             111112


Q ss_pred             HHHHHh--hCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcC
Q 015014          157 LICKIS--EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTG  234 (414)
Q Consensus       157 l~~~l~--~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG  234 (414)
                      .+.++.  .-..|+|+++.|+|.||+......||++|+.+++.+++.                    |+.  ..+- .||
T Consensus       157 i~~~~~~~s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~a--------------------GP~--vI~~-~~g  213 (523)
T 1on3_A          157 MFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFIT--------------------GPQ--VIKS-VTG  213 (523)
T ss_dssp             HHHHHHHHTTTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESS--------------------CHH--HHHH-HHC
T ss_pred             HHHHHHHhcCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEec--------------------CHH--HHHH-HhC
Confidence            222222  345999999999999999999999999999999887654                    221  1111 456


Q ss_pred             CCCCcHH-----HHH--HcCccceecCCC-CHHHHHHHHHH
Q 015014          235 KRISTPS-----DAL--FAGLGTDYVPSG-NLGSLKEALLA  267 (414)
Q Consensus       235 ~~i~~a~-----eA~--~~GLv~~vv~~~-~l~~~~~~l~~  267 (414)
                      +.++ .+     |.+  +.|++|.+++++ ++.+....+..
T Consensus       214 e~~~-~e~lggae~h~~~~G~vd~vv~d~~~~~~~~r~lL~  253 (523)
T 1on3_A          214 EDVT-ADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLS  253 (523)
T ss_dssp             CCCC-HHHHHSHHHHHHTTCCCSEEESSHHHHHHHHHHHHH
T ss_pred             CcCC-hHhcccHHHHhhccCceEEEeCCHHHHHHHHHHHHH
Confidence            7776 43     333  699999999964 34444444443

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.23  E-value=0.0053  Score=63.70  Aligned_cols=146  Identities=14%  Similarity=0.076  Sum_probs=93.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |.++..+-.-..-++.....+.+.++++.+.+.. +-+|.|.-+|      |+.+.+-..             .+..+-+
T Consensus       110 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lP~I~l~dSG------GARmqeg~~-------------sl~~~~~  169 (548)
T 2bzr_A          110 VCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-RPLIGINDGA------GARIQEGVV-------------SLGLYSR  169 (548)
T ss_dssp             EEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------SCCGGGTTH-------------HHHHHHH
T ss_pred             EEEEEEcCccccCCCChhHHHHHHHHHHHHHHcC-CCEEEEEcCC------CCCchhHHH-------------HHHHHHH
Confidence            4444444444567899999999999999888754 5677776544      444443211             1111222


Q ss_pred             HHHHHh--hCCCcEEEEECCccccchhhhhccCCeEEEcCC-eeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhc
Q 015014          157 LICKIS--EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT  233 (414)
Q Consensus       157 l~~~l~--~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~-a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~lt  233 (414)
                      .+.++.  .-..|+|++|.|+|.||+......||++|+.++ +.+++.                    |+.  ..+- .|
T Consensus       170 i~~~~~~~s~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a--------------------GP~--vI~~-~~  226 (548)
T 2bzr_A          170 IFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPD--VIKT-VT  226 (548)
T ss_dssp             HHHHHHHTTTTSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEESS--------------------CHH--HHHH-HH
T ss_pred             HHHHHHHhcCCCcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEec--------------------cHH--HHHH-Hh
Confidence            222232  334999999999999999999999999999987 777653                    221  1111 45


Q ss_pred             CCCCCcHH-----HHH--HcCccceecCCC-CHHHHHHHHH
Q 015014          234 GKRISTPS-----DAL--FAGLGTDYVPSG-NLGSLKEALL  266 (414)
Q Consensus       234 G~~i~~a~-----eA~--~~GLv~~vv~~~-~l~~~~~~l~  266 (414)
                      |+.++ .+     +.+  +.|++|.+++++ ++.+....+.
T Consensus       227 ge~v~-~e~lggae~h~~~sG~~d~vv~d~~~~~~~~r~ll  266 (548)
T 2bzr_A          227 GEEVT-MEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELL  266 (548)
T ss_dssp             CCCCC-HHHHHBHHHHHHTSSCCSEEESSHHHHHHHHHHHH
T ss_pred             CCcCC-hHhcccHHHHhhccCceeEEeCCHHHHHHHHHHHH
Confidence            67776 43     323  699999999853 3433333433

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=97.10  E-value=0.025  Score=58.19  Aligned_cols=186  Identities=13%  Similarity=0.137  Sum_probs=121.2

Q ss_pred             CccEEEEEe-cCcEEEEEEcCCCCCC-------------CCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCCCCCccCCC
Q 015014           65 EEFVKGNVH-PNGVAVITLDRPKALN-------------AMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRAFCAGM  129 (414)
Q Consensus        65 ~~~v~~~~~-~~~V~~Itlnrp~~~N-------------al~~~m~~eL~~~l~~~~-~d~~v~~vVl~g~g~~~FcaG~  129 (414)
                      |+.+..... ..+++.++...|..-.             ..-..|..||.+++..+. +++++...++...|        
T Consensus       265 y~~~~~ai~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g--------  336 (556)
T 2w3p_A          265 YKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEG--------  336 (556)
T ss_dssp             ETTEEEEEETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEES--------
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccC--------
Confidence            444544442 4568889998876322             122347888966666554 67889999988876        


Q ss_pred             ChhhHHHH---hhhCCCCCchHHHHHHHHHHHHHHhhCCCcEEEEE-CCcccc-chhhhhccCCeEEEcC-------Cee
Q 015014          130 DIKGVVAE---IQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLM-DGVTMG-FGIGISGHGRYRIVTE-------KTL  197 (414)
Q Consensus       130 Dl~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav-nG~a~G-gG~~Lala~D~ria~~-------~a~  197 (414)
                      |...+...   .....+.=...+......+.+.+|--...-++|.| .|.|+. .=++|+++||..++-+       ...
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~  416 (556)
T 2w3p_A          337 DARHLLAADASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPA  416 (556)
T ss_dssp             CHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCC
T ss_pred             CHHHHhhhHHHHHhccchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCce
Confidence            33433321   11111110112222222345566767778899999 477854 4579999999999953       478


Q ss_pred             EecccccCCCCCChhHHHHH-hhCCCcHHHHHH--HHhcCCCCCcHHHHHHcCccceecCCCCHHH
Q 015014          198 LAMPENGIGLFPDVGFSYIA-AKGPGGGSVGAY--LGMTGKRISTPSDALFAGLGTDYVPSGNLGS  260 (414)
Q Consensus       198 f~~pe~~~Gl~P~~g~~~~L-~r~~G~~~~a~~--l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~  260 (414)
                      +.+.+.++|.+|-.-+..+| .|..|.. -..+  -...|++++ +++|.++|||+...++=+.++
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  480 (556)
T 2w3p_A          417 ITLSEVNFGLYPMVTHQSRLARRFYEET-EPLDAVRSRIGQAIK-PVEAERLGLVTASPDDIDWAD  480 (556)
T ss_dssp             EECCGGGGTTSCCTTSSCHHHHHTTTCH-HHHHHHHTTTTSCBC-HHHHHHTTSSSBCCCTTTHHH
T ss_pred             eEeeccccCcccCCCchhHHHHHhcCCc-chHHHHHHHhCCCCC-HHHHHhcCCeecCcccCChHH
Confidence            99999999999976666666 4555654 3332  246699999 999999999999876655544

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=96.91  E-value=0.0093  Score=61.80  Aligned_cols=143  Identities=13%  Similarity=0.105  Sum_probs=92.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |.++..+..-..-++.....+.+.++++.+.+.. +-+|.|.-+| ++..     .+-....   .........+    .
T Consensus       123 v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~-lPvI~l~dSg-GARl-----~~q~~~~---~~~~~~~~i~----~  188 (555)
T 3u9r_B          123 CMIVGNDATVKGGTYYPLTVKKHLRAQAIALENR-LPCIYLVDSG-GANL-----PRQDEVF---PDREHFGRIF----F  188 (555)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC-CBCG-----GGGGGTS---SSTTSTTHHH----H
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcC-CCEEEEECCC-CCCC-----CCcceee---cccccHHHHH----H
Confidence            4545555444567899999999999999888764 5566665444 3432     1100000   0000111122    2


Q ss_pred             HHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcC-CeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCC
Q 015014          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE-KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (414)
Q Consensus       157 l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~-~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~  235 (414)
                      .+..+.....|+|++|.|.|.|||.-....||++|+.+ ++.+       |+             -|+.  ..+ ..||+
T Consensus       189 ~~~~ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i-------~~-------------aGP~--vik-~~~ge  245 (555)
T 3u9r_B          189 NQANMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATI-------FL-------------AGPP--LVK-AATGE  245 (555)
T ss_dssp             HHHHHHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBC-------BS-------------SCHH--HHH-HHHCC
T ss_pred             HHHHHhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceE-------EE-------------ccHH--HHH-HHhcC
Confidence            23356667899999999999999999999999988876 3433       32             1221  112 26789


Q ss_pred             CCCcHHHH-------HHcCccceecCCCC
Q 015014          236 RISTPSDA-------LFAGLGTDYVPSGN  257 (414)
Q Consensus       236 ~i~~a~eA-------~~~GLv~~vv~~~~  257 (414)
                      .++ +++.       ...|++|.++++++
T Consensus       246 ~~~-~e~LGGa~~h~~~sGv~d~v~~de~  273 (555)
T 3u9r_B          246 VVS-AEELGGADVHCKVSGVADHYAEDDD  273 (555)
T ss_dssp             CCC-HHHHHBHHHHHHTTCSCSEEESSHH
T ss_pred             ccC-hhhccchhhhhhccCceeEEeCCHH
Confidence            998 8887       78999999998754

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.69  E-value=0.022  Score=58.88  Aligned_cols=159  Identities=12%  Similarity=0.053  Sum_probs=98.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |++|-.|.--..-+++.+..+.+.+.++.+++. .+-+|.|.-.+  .|-.|.+-...              .......+
T Consensus       327 V~via~d~~~~gG~l~~~~~~K~ar~i~~a~~~-~~Plv~l~ds~--G~~~G~~~E~~--------------G~~~~~Ak  389 (522)
T 1x0u_A          327 VGIVANNPEEFGGSIDIDAADKAARFIRFCDAF-NIPLISLVDTP--GYVPGTDQEYK--------------GIIRHGAK  389 (522)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCSHHHHHT--------------THHHHHHH
T ss_pred             EEEEEECCCccCCCcCHHHHHHHHHHHHHHhhC-CCCEEEEecCC--CCCCchHHHHH--------------HHHHHHHH
Confidence            444444433233589999999999999988764 56777776553  35544332110              02234445


Q ss_pred             HHHHHhhCCCcEEEEECCccccchhhhhcc----CCeEEEcCCeeEecccccCCCCCChhHHHHHhhCC-Cc----HHHH
Q 015014          157 LICKISEYKKPYISLMDGVTMGFGIGISGH----GRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP-GG----GSVG  227 (414)
Q Consensus       157 l~~~l~~~~kPvIAavnG~a~GgG~~Lala----~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~-G~----~~~a  227 (414)
                      ++.++.....|+|+.|-|.|.|||.-....    +|+++|.+++.+++       ..+-|+...+-+.. -.    ...-
T Consensus       390 ~l~~~~~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v-------~gpegaa~Il~r~~i~~~~d~~~~~  462 (522)
T 1x0u_A          390 MLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAV-------TGPEGAVRILYRKEIQQASNPDDVL  462 (522)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTSSSSSSSSSSSSSS
T ss_pred             HHHHHHhCCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEe-------cCHHHHHHHHhhhhhhcccCHHHHH
Confidence            677888999999999999999987744433    99999888877764       33334443343321 10    0000


Q ss_pred             HHHHh--cCCCCCcHHHHHHcCccceecCCCCHHH
Q 015014          228 AYLGM--TGKRISTPSDALFAGLGTDYVPSGNLGS  260 (414)
Q Consensus       228 ~~l~l--tG~~i~~a~eA~~~GLv~~vv~~~~l~~  260 (414)
                      .++.-  .-..-+ +..+.+.|+||.|+++.++..
T Consensus       463 ~~l~~~y~~~~~~-~~~~~~~G~iD~II~p~~tR~  496 (522)
T 1x0u_A          463 KQRIAEYRKLFAN-PYWAAEKGLVDDVIEPKDTRR  496 (522)
T ss_dssp             HHHHHHHHHHHSS-SHHHHHTTSSSEECCGGGHHH
T ss_pred             HHHHHHHHHhcCC-HHHHHhcCCCcEeECHHHHHH
Confidence            11110  001134 688999999999999876643

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.42  E-value=0.033  Score=57.56  Aligned_cols=149  Identities=17%  Similarity=0.100  Sum_probs=90.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |.++..+..-..-++.....+.+.++++.+.+.. +-+|.|.-+| ++..     .+-....         ..+-.....
T Consensus       100 v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~~-lPvI~l~dSg-GAR~-----qeg~~~l---------~g~~~~~~~  163 (527)
T 1vrg_A          100 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGINDSG-GARI-----QEGVDAL---------AGYGEIFLR  163 (527)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEEEC-SBCG-----GGTHHHH---------HHHHHHHHH
T ss_pred             EEEEEEeccccCccccHHHHHHHHHHHHHHHHcC-CCEEEEECCC-CCCc-----cchhHHH---------HHHHHHHHH
Confidence            5555555444567899999999999999888754 4556655444 3443     2211100         001111111


Q ss_pred             HHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCC-eeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCC
Q 015014          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (414)
Q Consensus       157 l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~-a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~  235 (414)
                      .  .......|+|++|.|.|.|||......||++|+.++ +.+++                    .|+.  ..+. .||+
T Consensus       164 ~--~~~s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~--------------------aGP~--vi~~-~~ge  218 (527)
T 1vrg_A          164 N--TLASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFI--------------------TGPN--VIKA-VTGE  218 (527)
T ss_dssp             H--HHHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBS--------------------SCHH--HHHH-HHCC
T ss_pred             H--HHhCCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEe--------------------cCHH--HHHH-HhCC
Confidence            1  122456999999999999999999999999999987 66332                    1221  2222 4566


Q ss_pred             CCCcHH-----HHH--HcCccceecCCC-CHHHHHHHHHH
Q 015014          236 RISTPS-----DAL--FAGLGTDYVPSG-NLGSLKEALLA  267 (414)
Q Consensus       236 ~i~~a~-----eA~--~~GLv~~vv~~~-~l~~~~~~l~~  267 (414)
                      .++ .+     +.+  +.|++|.+++++ ++.+....+..
T Consensus       219 ~v~-~e~lggae~~~~~~G~vd~vv~d~~~~~~~~~~~Ls  257 (527)
T 1vrg_A          219 EIS-QEDLGGAMVHNQKSGNAHFLADNDEKAMSLVRTLLS  257 (527)
T ss_dssp             CCC-HHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHT
T ss_pred             CCC-ccccccHHHHhhcccceEEEecCHHHHHHHHHHHHH
Confidence            666 42     323  699999999864 34444444433

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=96.39  E-value=0.03  Score=58.42  Aligned_cols=162  Identities=12%  Similarity=-0.031  Sum_probs=93.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |.++-.+..-+.-++.....+.+.++++.+.+.. +-+|.|.-+| +++.     .+ .....  .........+    .
T Consensus       108 V~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~~-lPvI~l~dSg-GArl-----~~-qe~~~--~~l~~~g~if----~  173 (588)
T 3gf3_A          108 VYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMH-LPLIYLLNCS-GVEF-----PN-QDKVY--PNRRGGGTPF----F  173 (588)
T ss_dssp             EEEEEECTTSGGGCBCTTHHHHHHHHHHHHHHHT-CCEEEEECCC-CBCG-----GG-HHHHS--SSTTSTTHHH----H
T ss_pred             EEEEEECCcccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEcCC-CcCc-----cc-ccccc--cchhhHHHHH----H
Confidence            4444444444556888888999999999887754 5666665544 4443     11 11000  0001111122    2


Q ss_pred             HHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEeccccc--CCCCCChhHHHHHhhC---CCcHHHHHHHH
Q 015014          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG--IGLFPDVGFSYIAAKG---PGGGSVGAYLG  231 (414)
Q Consensus       157 l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~--~Gl~P~~g~~~~L~r~---~G~~~~a~~l~  231 (414)
                      .+..+.....|+|++|-|.|.|||.-.++++|++++.+++.+++--..  -|+-|.+  . +.+.-   +... ..-+-.
T Consensus       174 ~~~~ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g--~-~~~~~~~~~~~~-~~ge~~  249 (588)
T 3gf3_A          174 RNSELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKG--Y-IDDEAAEQIIAA-QIENSK  249 (588)
T ss_dssp             HHHHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC------------------CHHHHHH-HHHHHH
T ss_pred             HHHHHhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccc--c-ccccchhhhhhh-hccccc
Confidence            233456678999999999999998877888888888888888774332  1211110  0 01110   0011 122222


Q ss_pred             hcCCCCCcHHHHH--HcCccceecCCCC
Q 015014          232 MTGKRISTPSDAL--FAGLGTDYVPSGN  257 (414)
Q Consensus       232 ltG~~i~~a~eA~--~~GLv~~vv~~~~  257 (414)
                      .+.+.+. +.+..  ..|++|.++++|+
T Consensus       250 vs~eeLG-Ga~~h~~~sGv~d~~a~de~  276 (588)
T 3gf3_A          250 LKVPAPG-SVPIHYDETGFFREVYQNDL  276 (588)
T ss_dssp             TTCCCTT-BHHHHTTTSCCSCEEESSHH
T ss_pred             cChhhcc-chhhhccccccceEEeCCHH
Confidence            5778887 56666  5999999998754

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=95.79  E-value=0.11  Score=53.53  Aligned_cols=153  Identities=13%  Similarity=0.087  Sum_probs=93.1

Q ss_pred             EcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHH
Q 015014           82 LDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICK  160 (414)
Q Consensus        82 lnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  160 (414)
                      =|+|. ..-+++.+-.....+.++.+++ ..+-+|.|.-.  ..|..|.+-....              ......+++.+
T Consensus       336 a~~~~~~~G~~~~~~~~Kaar~i~~a~~-~~~Plv~lvDt--pG~~~G~~~E~~g--------------~~~~~A~~~~a  398 (527)
T 1vrg_A          336 ANQPSVLAGVLDIDSSDKAARFIRFLDA-FNIPILTFVDT--PGYLPGVAQEHGG--------------IIRHGAKLLYA  398 (527)
T ss_dssp             EECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE--CCBCCCHHHHHTT--------------HHHHHHHHHHH
T ss_pred             EEcCcccCCCCCHHHHHHHHHHHHHHhh-cCCCeEEEecC--CCCcCchhhHHhH--------------HHHHHHHHHHH
Confidence            34444 2347999999999999988765 44566666543  2365554322211              22333456778


Q ss_pred             HhhCCCcEEEEECCccccchhhhhcc----CCeEEEcCCeeEecccccCCCCCChhHHHHHhhCC-----CcHHHHHHHH
Q 015014          161 ISEYKKPYISLMDGVTMGFGIGISGH----GRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP-----GGGSVGAYLG  231 (414)
Q Consensus       161 l~~~~kPvIAavnG~a~GgG~~Lala----~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~-----G~~~~a~~l~  231 (414)
                      +..+..|+|+.|=|.|.|||..-...    +|+++|.+++.++       ..++-|+...+-+.-     .......++.
T Consensus       399 ~~~~~vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~  471 (527)
T 1vrg_A          399 YSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIA-------VMGPEGAANIIFKREIEASSNPEETRRKLI  471 (527)
T ss_dssp             HHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHH
T ss_pred             HhcCCCCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHH
Confidence            88899999999999998877643332    7887776666665       444445544443211     1110111122


Q ss_pred             h--cCCCCCcHHHHHHcCccceecCCCCHH
Q 015014          232 M--TGKRISTPSDALFAGLGTDYVPSGNLG  259 (414)
Q Consensus       232 l--tG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (414)
                      -  .-..-+ +..+.+.|+||.|+++.++.
T Consensus       472 ~~y~~~~~~-p~~~~~~g~iD~II~p~~tR  500 (527)
T 1vrg_A          472 EEYKQQFAN-PYIAASRGYVDMVIDPRETR  500 (527)
T ss_dssp             HHHHHHTSS-HHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHhhCC-HHHHHHcCCCCeeeCHHHHH
Confidence            1  111244 78899999999999986654

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=95.26  E-value=0.26  Score=50.99  Aligned_cols=157  Identities=13%  Similarity=0.162  Sum_probs=95.7

Q ss_pred             EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHH
Q 015014           77 VAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY  155 (414)
Q Consensus        77 V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (414)
                      |++|- |+|. ..-+++.+-.....+.++.+++. ++-+|.|.-.  ..|..|.+-.+-.              ......
T Consensus       349 Vgvia-n~~~~~~G~l~~~~a~Kaar~i~~a~~~-~iPlv~lvDt--~Gf~~G~~~E~~G--------------i~~~ga  410 (548)
T 2bzr_A          349 VGIVA-NQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV--PGFLPGTDQEYNG--------------IIRRGA  410 (548)
T ss_dssp             EEEEE-ECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE--CCBCCCHHHHHTT--------------HHHHHH
T ss_pred             EEEEE-ECCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeec--cCCCCChHHHHhh--------------HHHHHH
Confidence            44333 4444 23479999999999999888764 4566666543  2476665433211              223344


Q ss_pred             HHHHHHhhCCCcEEEEECCccccchhhhhc----cCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCC---------
Q 015014          156 SLICKISEYKKPYISLMDGVTMGFGIGISG----HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG---------  222 (414)
Q Consensus       156 ~l~~~l~~~~kPvIAavnG~a~GgG~~Lal----a~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G---------  222 (414)
                      +++.++.....|+|+.|=|.|.|||.--..    .+|+++|.++++++       +.++-|+...+-+.--         
T Consensus       411 ~~l~a~~~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~-------Vmgpegaa~Il~r~~~~~~~~~g~~  483 (548)
T 2bzr_A          411 KLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIA-------VMGASGAVGFVYRQQLAEAAANGED  483 (548)
T ss_dssp             HHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTCCC----------
T ss_pred             HHHHHHhCCCCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEE-------ecCHHHHHHHHhhhHHhhhhccccc
Confidence            567788889999999999999887764442    38887777776665       4444455554443211         


Q ss_pred             cHHHHHHHHh--cCCCCCcHHHHHHcCccceecCCCCHH
Q 015014          223 GGSVGAYLGM--TGKRISTPSDALFAGLGTDYVPSGNLG  259 (414)
Q Consensus       223 ~~~~a~~l~l--tG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (414)
                      ......++.-  .-..-+ +..+.+.|+||.|+++.+..
T Consensus       484 ~~~~~~~~~~~y~~~~~~-p~~~a~~g~iD~II~p~~tR  521 (548)
T 2bzr_A          484 IDKLRLRLQQEYEDTLVN-PYVAAERGYVGAVIPPSHTR  521 (548)
T ss_dssp             CHHHHHHHHHHHHHHHSB-SHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHHHHHHHHHhhCC-HHHHHhcCCCceeeCHHHHH
Confidence            0000011211  000133 57789999999999987654

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=95.17  E-value=0.32  Score=50.08  Aligned_cols=156  Identities=13%  Similarity=0.088  Sum_probs=95.9

Q ss_pred             EEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHH
Q 015014           77 VAVITLDRPKA-LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY  155 (414)
Q Consensus        77 V~~Itlnrp~~-~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (414)
                      |++|- |+|.. .-+++.+-.....+.++.+++ .++-+|.|.-.  ..|..|.+-.+-.              ......
T Consensus       328 Vgvia-n~~~~~~G~~~~~~a~Kaar~i~~~~~-~~iPlv~lvDt--pGf~~G~~~E~~G--------------i~~~~A  389 (523)
T 1on3_A          328 VGIVA-NQPSVMSGCLDINASDKAAEFVNFCDS-FNIPLVQLVDV--PGFLPGVQQEYGG--------------IIRHGA  389 (523)
T ss_dssp             EEEEE-ECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE--CCBCCCHHHHHTT--------------HHHHHH
T ss_pred             EEEEE-ecCCccCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeC--CCcCcchHHHHhh--------------HHHHHH
Confidence            44333 44542 347999999999999987765 44566666543  3476665432211              233345


Q ss_pred             HHHHHHhhCCCcEEEEECCccccchhhhhcc----CCeEEEcCCeeEecccccCCCCCChhHHHHHhhCC-----CcHHH
Q 015014          156 SLICKISEYKKPYISLMDGVTMGFGIGISGH----GRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP-----GGGSV  226 (414)
Q Consensus       156 ~l~~~l~~~~kPvIAavnG~a~GgG~~Lala----~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~-----G~~~~  226 (414)
                      +++.++.....|+|+.|=|.+.|||..-...    +|+++|.+++.++       ..++-|+...+-+.-     -.. .
T Consensus       390 ~~l~a~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~-~  461 (523)
T 1on3_A          390 KMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPD-A  461 (523)
T ss_dssp             HHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHH-H
T ss_pred             HHHHHHhcCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHH-H
Confidence            6777889999999999999998887754444    6776666665554       444455544443221     101 1


Q ss_pred             H-HHHHh--cCCCCCcHHHHHHcCccceecCCCCHH
Q 015014          227 G-AYLGM--TGKRISTPSDALFAGLGTDYVPSGNLG  259 (414)
Q Consensus       227 a-~~l~l--tG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (414)
                      . .++.-  .-..-+ +..+.+.|+||.|+++.++.
T Consensus       462 ~~~~~~~~y~~~~~~-p~~~a~~g~iD~II~p~~tR  496 (523)
T 1on3_A          462 MRAEKIEEYQNAFNT-PYVAAARGQVDDVIDPADTR  496 (523)
T ss_dssp             HHHHHHHHHHHHHSS-HHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHHHHHHhhCC-HHHHHhcCCCCEeeCHHHHH
Confidence            1 11211  011244 68899999999999986654

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=94.48  E-value=0.44  Score=49.11  Aligned_cols=156  Identities=12%  Similarity=0.145  Sum_probs=94.8

Q ss_pred             EEEcCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHH
Q 015014           80 ITLDRPKA-LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLI  158 (414)
Q Consensus        80 Itlnrp~~-~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~  158 (414)
                      |.=|+|.. .-.++.+-.....+.++.+++. ++-+|.|.-.  ..|-.|.+-.+.              .......+++
T Consensus       342 vian~~~~~~G~l~~~~a~Kaarfi~lcd~~-~iPlv~lvDt--pGf~~G~~~E~~--------------Gi~~~gAk~l  404 (531)
T 3n6r_B          342 VVANQPLVLAGCLDIDSSRKAARFVRFCDAF-EIPLLTLIDV--PGFLPGTSQEYG--------------GVIKHGAKLL  404 (531)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE--CSBCCSHHHHHT--------------THHHHHHHHH
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHHHhhcc-CCCEEEEeCC--CCCCCCHHHHHh--------------hHHHHHHHHH
Confidence            33455542 2479999999999998877654 4666666544  246556443211              1334455788


Q ss_pred             HHHhhCCCcEEEEECCccccchhhhhcc----CCeEEEcCCeeEecccccCCCCCChhHHHHHhh-CCCc-HHHHHHHH-
Q 015014          159 CKISEYKKPYISLMDGVTMGFGIGISGH----GRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK-GPGG-GSVGAYLG-  231 (414)
Q Consensus       159 ~~l~~~~kPvIAavnG~a~GgG~~Lala----~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r-~~G~-~~~a~~l~-  231 (414)
                      .++..+..|+|+.|-|.+.|||.--...    +|+++|.+++.++       ..++-|+...+-+ .+-. .......- 
T Consensus       405 ~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~-------Vm~pegaa~Il~r~~~~~~~~~~~~~~~  477 (531)
T 3n6r_B          405 YAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVA-------VMGAKGATEIIHRGDLGDPEKIAQHTAD  477 (531)
T ss_dssp             HHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHCCTTTTSTTHHHHHHHH
T ss_pred             HHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEe-------cCCHHHHHHHHhcccccchhHHHHHHHH
Confidence            8999999999999999998887643332    8887777666665       4444444444422 1110 00111110 


Q ss_pred             hcCCCCCcHHHHHHcCccceecCCCCHHH
Q 015014          232 MTGKRISTPSDALFAGLGTDYVPSGNLGS  260 (414)
Q Consensus       232 ltG~~i~~a~eA~~~GLv~~vv~~~~l~~  260 (414)
                      +.-+.-+ +..|...|++|.|+++.+...
T Consensus       478 y~~~~~~-p~~aa~~~~vD~vIdP~~TR~  505 (531)
T 3n6r_B          478 YEERFAN-PFVASERGFVDEVIQPRSTRK  505 (531)
T ss_dssp             HHHHHSS-SHHHHHHTSSSEECCGGGHHH
T ss_pred             HHHHhcC-HHHHHhcCccCcccCHHHHHH
Confidence            1111133 566778999999999987643

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=93.29  E-value=2.2  Score=44.43  Aligned_cols=145  Identities=14%  Similarity=0.076  Sum_probs=94.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcE
Q 015014           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (414)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPv  168 (414)
                      -.++.+-.....+.++.++. .++-+|.|.-.  ..|..|.+-.+-              .......+++.++..+..|+
T Consensus       385 G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDt--pGf~~G~~~E~~--------------Gi~~~gA~~~~a~a~a~vP~  447 (587)
T 1pix_A          385 GKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDT--TGIDVGNDAEKA--------------ELLGLGQSLIYSIQTSHIPQ  447 (587)
T ss_dssp             TEECHHHHHHHHHHHHHHHH-TTCCEEEEECC--CEECCSHHHHHT--------------THHHHHHHHHHHHHTCCCCE
T ss_pred             CCcCHHHHHHHHHHHHHhhc-CCCCeEEEecC--CCCCCcHHHHHH--------------HHHHHHHHHHHHHHhCCCCE
Confidence            46999999999999986665 55777777654  357766543211              13344557888999999999


Q ss_pred             EEEECCccccchhhhhcc-----C--CeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH---------HHH---HH
Q 015014          169 ISLMDGVTMGFGIGISGH-----G--RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG---------SVG---AY  229 (414)
Q Consensus       169 IAavnG~a~GgG~~Lala-----~--D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~---------~~a---~~  229 (414)
                      |+.|=|.+.||| .++++     +  |+++|.+++.++       +.++-|+...+-+.--..         ..+   .+
T Consensus       448 itvI~g~~~Ggg-~~am~~~~~~~~~d~~~a~p~A~~~-------Vm~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~  519 (587)
T 1pix_A          448 FEITLRKGTAAA-HYVLGGPQGNDTNAFSIGTAATEIA-------VMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNN  519 (587)
T ss_dssp             EEEECSEEETTH-HHHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             EEEEcCCCccHH-HHHhcCcccCcccceeeeccCCeEe-------cCCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHH
Confidence            999999998877 45555     4  887777766665       444445444443221000         000   11


Q ss_pred             HH--hcCCCCCcHHHHHHcCccceecCCCCHHH
Q 015014          230 LG--MTGKRISTPSDALFAGLGTDYVPSGNLGS  260 (414)
Q Consensus       230 l~--ltG~~i~~a~eA~~~GLv~~vv~~~~l~~  260 (414)
                      +.  +. +..+ +..|.+.|+||.|+++.+...
T Consensus       520 ~~~~y~-~~~~-p~~aa~~g~iD~VI~p~~tR~  550 (587)
T 1pix_A          520 LIQAFY-TKSR-PKVCAELGLVDEIVDMNKIRG  550 (587)
T ss_dssp             HHHHHH-HTTS-HHHHHHHTSSSEECCTTTHHH
T ss_pred             HHHHHH-HhCC-HHHHHhcCCCccccCHHHHHH
Confidence            10  11 2466 899999999999999877643

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=93.21  E-value=2.6  Score=43.57  Aligned_cols=148  Identities=9%  Similarity=0.074  Sum_probs=92.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |++|--|     -+++.+-.....+.++.+++. ++-+|.|.-..  .|-.|.+-.+-              .......+
T Consensus       359 Vgvian~-----G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtp--Gf~~G~~~E~~--------------Gi~~~gAk  416 (555)
T 3u9r_B          359 IAILANN-----GILFAEAAQKGAHFIELACQR-GIPLLFLQNIT--GFMVGQKYEAG--------------GIAKHGAK  416 (555)
T ss_dssp             EEEEEEC-----SSBCHHHHHHHHHHHHHHHHH-TCCEEEEEEEC--CBCCSHHHHHT--------------THHHHHHH
T ss_pred             EEEEEeC-----CccCHHHHHHHHHHHHHHhcC-CCCEEEEecCc--CCCCCHHHHHH--------------HHHHHHHH
Confidence            5555444     579999999998888877663 46777776552  46666443211              12334556


Q ss_pred             HHHHHhhCCCcEEEEECCccccchhhhh----ccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHh
Q 015014          157 LICKISEYKKPYISLMDGVTMGFGIGIS----GHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM  232 (414)
Q Consensus       157 l~~~l~~~~kPvIAavnG~a~GgG~~La----la~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~l  232 (414)
                      ++.++..+..|+|+.|-|.+.|||..-.    +.+|+++|.+++.++       +..+-|....|-..     +-.++-.
T Consensus       417 ~~~a~~~a~vP~itvi~g~~~Ggg~~am~~~~~~~d~~~a~p~A~i~-------Vmgpegaa~il~~~-----~~~~~~~  484 (555)
T 3u9r_B          417 LVTAVACARVPKFTVLIGGSFGAGNYGMCGRAYDPRFLWMWPNARIG-------VMGGEQAAGVLAQV-----KREQAER  484 (555)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEETTHHHHTTCGGGCCSEEEECTTCEEE-------SSCHHHHHHHHHHH-----HHHHHHT
T ss_pred             HHHHHHhCCCCEEEEEeCCccchhhHhhcCccCCCCeEEEcCCcEEE-------cCCHHHHHHHHHHH-----HHHHHHh
Confidence            7888999999999999999888764332    236888887777766       33334444433210     0001111


Q ss_pred             cCCC--------------------CCcHHHHHHcCccceecCCCCHH
Q 015014          233 TGKR--------------------ISTPSDALFAGLGTDYVPSGNLG  259 (414)
Q Consensus       233 tG~~--------------------i~~a~eA~~~GLv~~vv~~~~l~  259 (414)
                      .|+.                    .+ +-.|-..|++|.|+++.+..
T Consensus       485 ~g~~~~~~~~~~~~~~~~~~y~~~~~-p~~aa~r~~vD~vIdP~~TR  530 (555)
T 3u9r_B          485 AGQQLGVEEEAKIKAPILEQYEHQGH-PYYSSARLWDDGVIDPAQTR  530 (555)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHS-HHHHHHTTSSSCBCCGGGHH
T ss_pred             ccCCCCcchHHHHHHHHHHHHHHhCC-HHHHhhccccCcccChHHHH
Confidence            1111                    24 55666789999999987764

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=91.35  E-value=1.2  Score=45.85  Aligned_cols=154  Identities=14%  Similarity=0.167  Sum_probs=96.6

Q ss_pred             EEEcCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHH
Q 015014           80 ITLDRPKA-LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLI  158 (414)
Q Consensus        80 Itlnrp~~-~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~  158 (414)
                      |.=|+|.. .-+++.+......+.++.+++. ++-+|.|.-..  .|-.|.+-.+              ........+++
T Consensus       336 vian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtp--Gf~~G~~~E~--------------~gi~~~~Ak~l  398 (530)
T 3iav_A          336 IVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVP--GFLPGVDQEH--------------DGIIRRGAKLI  398 (530)
T ss_dssp             EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCCHHHHH--------------TTHHHHHHHHH
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeCC--CCCccHHHHH--------------hhHHHHHHHHH
Confidence            44455542 2479999999999999877664 46677665542  3766655321              11445556788


Q ss_pred             HHHhhCCCcEEEEECCccccchhhhhcc-----CCeEEEcCCeeEecccccCCCCCChhHHHHHhhC-CC-----cHHHH
Q 015014          159 CKISEYKKPYISLMDGVTMGFGIGISGH-----GRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-PG-----GGSVG  227 (414)
Q Consensus       159 ~~l~~~~kPvIAavnG~a~GgG~~Lala-----~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~-~G-----~~~~a  227 (414)
                      .++..+..|+|+.|-|.+.|||. ++++     +|+++|.+++.++       ..++-|+...+-+. +-     ....-
T Consensus       399 ~a~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~-------Vm~~egaa~il~r~~~~~~~~d~~~~~  470 (530)
T 3iav_A          399 FAYAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIA-------VMGAQGAVNILHRRTIADAGDDAEATR  470 (530)
T ss_dssp             HHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTSTTTSTTCTTCHHHH
T ss_pred             HHHHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEe-------cCCHHHHHHHHhhhhhhhcccCHHHHH
Confidence            89999999999999999988665 5554     6887777776665       44444444444322 11     00011


Q ss_pred             HHHH--hcCCCCCcHHHHHHcCccceecCCCCHH
Q 015014          228 AYLG--MTGKRISTPSDALFAGLGTDYVPSGNLG  259 (414)
Q Consensus       228 ~~l~--ltG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (414)
                      .++.  +.-+.-+ +..|...|++|.|+++.+..
T Consensus       471 ~~~~~~y~~~~~~-p~~aa~~~~vD~VIdP~~TR  503 (530)
T 3iav_A          471 ARLIQEYEDALLN-PYTAAERGYVDAVIMPSDTR  503 (530)
T ss_dssp             HHHHHHHHHHHSS-SHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHHHHhcCC-HHHHHhcCCCCcccCHHHHH
Confidence            1111  1111134 66778899999999997764

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=89.27  E-value=0.2  Score=53.40  Aligned_cols=34  Identities=21%  Similarity=0.173  Sum_probs=31.5

Q ss_pred             CCCcEEEEECCccccchhhhhccCCeEEEcCCee
Q 015014          164 YKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTL  197 (414)
Q Consensus       164 ~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~  197 (414)
                      -..|+|++|.|.|.|||.-+...||++|+.+++.
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~  278 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQP  278 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCC
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCce
Confidence            4689999999999999999999999999999863

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=86.45  E-value=0.36  Score=51.87  Aligned_cols=36  Identities=19%  Similarity=0.226  Sum_probs=32.9

Q ss_pred             CCCcEEEEECCccccchhhhhccCCeEEEcCCeeEe
Q 015014          164 YKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  199 (414)
Q Consensus       164 ~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~  199 (414)
                      ...|+|++|-|.|.|||.-++..||++|+.+++.+.
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~  293 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHII  293 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEE
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEE
Confidence            469999999999999999999999999999986654

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=80.81  E-value=16  Score=37.96  Aligned_cols=144  Identities=15%  Similarity=0.140  Sum_probs=91.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcE
Q 015014           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (414)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPv  168 (414)
                      -.++.+-.....+.++.+++. ++-+|.|.-.  ..|-.|.+-.+-              ...+...+++.++..+.+|+
T Consensus       387 G~l~~~~a~Kaarfi~lcd~f-~iPlv~lvDt--pGf~~G~~aE~~--------------Gi~~~gAk~l~a~a~a~VP~  449 (588)
T 3gf3_A          387 GKLYRQGLIKMNEFVTLCARD-RIPLIWLQDT--TGIDVGDEAEKA--------------ELLGLGQSLIYSIENSKLPS  449 (588)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC--CEECCSHHHHHT--------------THHHHHHHHHHHHHHHCSCE
T ss_pred             CCcCHHHHHHHHHHHHHhhhc-CCCeEEEecC--CCCCCCHHHHHH--------------HHHHHHHHHHHHHHhCCCCE
Confidence            368899999988888887764 5677777654  357777543221              13344557888999999999


Q ss_pred             EEEECCccccchhhhhccC-------CeEEEcCCeeEecccccCCCCCChhHHHHHhhC-C------Cc------H---H
Q 015014          169 ISLMDGVTMGFGIGISGHG-------RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-P------GG------G---S  225 (414)
Q Consensus       169 IAavnG~a~GgG~~Lala~-------D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~-~------G~------~---~  225 (414)
                      |+.|=|.+.|||. +++++       |+++|.++++++       ..++-|+...+-+. +      |.      .   .
T Consensus       450 itvI~g~~~Ggg~-~am~~~~~~~~~~~~~awp~A~~s-------Vm~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~~  521 (588)
T 3gf3_A          450 LEITIRKASAAAH-YVLGGPQGNNTNVFSIGTGACEYY-------VMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMND  521 (588)
T ss_dssp             EEEESSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHC-------CHHHHHHHH
T ss_pred             EEEEcCCccHHHH-HHhcccccCCccceEEECCCceEE-------eCCHHHHHHHHhhhHHhhhhccccccchHHHHHHH
Confidence            9999999987765 55553       255565555554       54444444443221 1      10      0   0


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHH
Q 015014          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSL  261 (414)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~  261 (414)
                      ...++-   +..+ +--|-..|++|.|+++.+....
T Consensus       522 ~~~~y~---~~~~-p~~aA~r~~vD~VIdP~~TR~~  553 (588)
T 3gf3_A          522 MIQMYT---DKSR-PKYCTEKGMVDEIVDMTEVRPY  553 (588)
T ss_dssp             HHHHHH---HTTS-HHHHHHTTSSSEECCGGGHHHH
T ss_pred             HHHHHH---HhCC-HHHHHhcCCCCeeeCHHHHHHH
Confidence            111111   1346 7888899999999999886543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	414
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	1e-25
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	1e-17
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	8e-17
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	2e-16
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	1e-15
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	5e-15
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	5e-15
d2f6qa1	245	c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C	2e-13
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	2e-12
d2a7ka1	230	c.14.1.3 (A:1-230) Carbapenem biosynthes protein C	6e-11
d1sg4a1	249	c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d	1e-09
d1wz8a1	263	c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT	2e-09
d1szoa_	249	c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus	7e-09
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	2e-08
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	4e-08

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  102 bits (255), Expect = 1e-25
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 9/164 (5%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V +I L+RPKALNA+   +  +    L+ +E DP V  +++ G            +  
Sbjct: 15  SSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQ 74

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
               Q   +   +        S    I+  KKP I+ ++G  +G G  ++         E
Sbjct: 75  NRTFQDCYSGKFL--------SHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGE 126

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIS 238
           K     PE  +G  P  G +    +   G S+   + +TG RIS
Sbjct: 127 KAQFGQPEILLGTIPGAGGTQRLTRAV-GKSLAMEMVLTGDRIS 169

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 79.7 bits (195), Expect = 1e-17
 Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 6/173 (3%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             VAV+ L+ P+  N ++ +M +     LD+ E+DP V+ V++ G G             
Sbjct: 7   GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAF-- 64

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E   +       +   +   L  ++  Y KP ++ ++G  +  G G++      ++ E
Sbjct: 65  -LERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDE 123

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 247
           +  L   E  IG    +    +      G      L +TG+ +    +A   G
Sbjct: 124 EARLGYTEVKIGFVAALVSVILVR--AVGEKAAKDLLLTGRLVE-AREAKALG 173

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.9 bits (190), Expect = 8e-17
 Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 7/163 (4%)

Query: 66  EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF 125
           E ++       V  + L+RP+  NAMN     +      +   D   + V++ G+  + F
Sbjct: 3   ESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGA-GKMF 61

Query: 126 CAGMDIKGVVAEIQKDRNTP------LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGF 179
            +G+D+  + ++I +            +  + +        I +  KP I+ + G  +G 
Sbjct: 62  TSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGG 121

Query: 180 GIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222
           G+ +      R  T+     + E  +GL  DVG      K  G
Sbjct: 122 GVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIG 164

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.3 bits (186), Expect = 2e-16
 Identities = 29/164 (17%), Positives = 68/164 (41%), Gaps = 6/164 (3%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            G+ V+ ++R    N+++ ++       +D  +SD +V+ ++I    P  FCAG D+K  
Sbjct: 14  RGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKER 73

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
                 +          +   ++I  I+    P I+ +DG+ +G G+ ++     R+   
Sbjct: 74  AKMSSSEVGPF-----VSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAAS 128

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIS 238
              + + E  + + P  G +    +  G       +  + + + 
Sbjct: 129 SAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELI-FSARVLD 171

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 74.8 bits (182), Expect = 1e-15
 Identities = 22/130 (16%), Positives = 35/130 (26%), Gaps = 12/130 (9%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +    +  +RP+  NA       +    LD     P V  VL+ G+GP     G      
Sbjct: 28  DATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSG 87

Query: 135 ------------VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIG 182
                        A         +          +   I    K  I L++G   G G  
Sbjct: 88  GDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHS 147

Query: 183 ISGHGRYRIV 192
           +       + 
Sbjct: 148 LHVVCDLTLA 157

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.4 bits (176), Expect = 5e-15
 Identities = 31/218 (14%), Positives = 61/218 (27%), Gaps = 15/218 (6%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
               +I L  P  LNA+  +  I     L+  + +  V   +I+ S  R F +G D KG+
Sbjct: 13  GPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSS-GRFFSSGADFKGI 71

Query: 135 VAEIQKDRNTP------LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR 188
                 D N         V         +     ++ K  I  ++G  +G    +     
Sbjct: 72  AKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCD 131

Query: 189 YRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL 248
                   +  +           G + ++     G +      M  K           G 
Sbjct: 132 IVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFK-YDIMCENGF 190

Query: 249 GTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYS 286
            +             +  A  F+    +++   +    
Sbjct: 191 ISKNFNM-------PSSNAEAFNAKVLEELREKVKGLY 221

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 72.5 bits (176), Expect = 5e-15
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 1/119 (0%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA IT+  P+  NA+++    +    L+  E D  V  V+I      AFCAG  ++ +
Sbjct: 11  DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMI-TGAEDAFCAGFYLREI 69

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             +                 + +I KI   K+P ++ ++GV  G G+GIS      I  
Sbjct: 70  PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICA 128

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 2e-13
 Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 3/141 (2%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+  I  +RPK  NA+N +M  +    L     D  +    +       + +G D+   
Sbjct: 11  DGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIIT--VLTGNGDYYSSGNDLTN- 67

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             +I                   +    ++ KP I++++G  +G  + + G       ++
Sbjct: 68  FTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASD 127

Query: 195 KTLLAMPENGIGLFPDVGFSY 215
           +     P + +G  P+   SY
Sbjct: 128 RATFHTPFSHLGQSPEGCSSY 148

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 65.5 bits (158), Expect = 2e-12
 Identities = 35/192 (18%), Positives = 74/192 (38%), Gaps = 6/192 (3%)

Query: 75  NGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           +G+  +  D + +++N  N     + +  +D  ++D  VK V++  SG   F  G DI  
Sbjct: 15  SGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIV-SSGKDVFIVGADITE 73

Query: 134 VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
            V   +       +         +     +   P ++ ++G+ +G G+ +     +R++ 
Sbjct: 74  FVENFKLPDAE--LIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMA 131

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYV 253
           +   + +PE  +G++P      +      G         +GK      DAL        V
Sbjct: 132 DSAKIGLPEVKLGIYPGF-GGTVRLPRLIGVDNAVEWIASGKENR-AEDALKVSAVDAVV 189

Query: 254 PSGNLGSLKEAL 265
            +  LG+    L
Sbjct: 190 TADKLGAAALDL 201

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 59.9 bits (143), Expect = 6e-11
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGM 129
           + V VITLD P   N  +  ++   K  L    +D  V+ V++ G   R+F AG 
Sbjct: 8   DEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGG 62

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 1e-09
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
            GVAV+    P  +N+++L+   +    L++ E+D   + V++    P  F AG+D
Sbjct: 12  AGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLD 66

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

 Score = 55.6 bits (132), Expect = 2e-09
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 59  MAAAGAE-EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI 117
           +A+  A    +       GV  IT  R + LNAM   +         + E+   V+ VL+
Sbjct: 1   LASLEARYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLL 59

Query: 118 EGSGPRAFCAGM 129
            G G      G 
Sbjct: 60  RGEGGVFSAGGS 71

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 53.9 bits (128), Expect = 7e-09
 Identities = 5/40 (12%), Positives = 10/40 (25%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKC 114
            GV ++T+               +      +   D   K 
Sbjct: 21  GGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKV 60

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 64  AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPR 123
           + ++V      N VAVI  +  + LNA++          L +         +L   SG +
Sbjct: 2   SYQYVNVVTI-NKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSK 60

Query: 124 AFCAGMDIK 132
            F AG DI 
Sbjct: 61  VFSAGHDIH 69

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 4e-08
 Identities = 32/149 (21%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 75  NGVAVITL-DRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           +G   I L  R    NA+N ++  +  + L+   +D   K VL   +G    C       
Sbjct: 10  DGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADD-SKLVLFSAAGSVFCCGLDFGYF 68

Query: 134 VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
           V           L  ++     + +    ++KKP +  ++G  +G G  I          
Sbjct: 69  VRHLRNDRNTASL--EMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWAN 126

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPG 222
           EK     P    G  PD   S    K  G
Sbjct: 127 EKAWFQTPYTTFGQSPDGCSSITFPKMMG 155

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	414
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	97.99
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	97.88
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	97.78
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	97.64
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	97.59
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	97.32
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.0
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	96.98
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.95
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	96.85
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	96.5
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	96.21
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	96.14
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	95.62
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	95.29
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	95.29
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	93.48
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	92.07
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	92.03

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-56  Score=426.16  Aligned_cols=255  Identities=23%  Similarity=0.292  Sum_probs=227.8

Q ss_pred             CCccEEEEEe--cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhC
Q 015014           64 AEEFVKGNVH--PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (414)
Q Consensus        64 ~~~~v~~~~~--~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~  141 (414)
                      .|++|.++++  +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++...    
T Consensus         2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~----   76 (260)
T d1mj3a_           2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGE-KAFAAGADIKEMQNR----   76 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SEEECCBCHHHHTTC----
T ss_pred             CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccc-ccccccchhhhhhcc----
Confidence            5889999974  368999999999999999999999999999999999999999999986 899999999987541    


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCC
Q 015014          142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP  221 (414)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~  221 (414)
                         .....+......++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++
T Consensus        77 ---~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~i  153 (260)
T d1mj3a_          77 ---TFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAV  153 (260)
T ss_dssp             ---CHHHHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHH
T ss_pred             ---chhhhhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHh
Confidence               11122333444566789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHH
Q 015014          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ  301 (414)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  301 (414)
                      |.+ ++++|++||++|+ |+||+++|||++|++++++.+.+..++                                   
T Consensus       154 g~~-~a~~l~l~g~~~~-a~eA~~~Glv~~v~~~~~~~~~a~~~a-----------------------------------  196 (260)
T d1mj3a_         154 GKS-LAMEMVLTGDRIS-AQDAKQAGLVSKIFPVETLVEEAIQCA-----------------------------------  196 (260)
T ss_dssp             CHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECTTTHHHHHHHHH-----------------------------------
T ss_pred             CHH-HHHHHHHcCcccC-chhhccCCCceeeeccccccccccccc-----------------------------------
Confidence            998 9999999999999 999999999999999998865444433                                   


Q ss_pred             HHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHH
Q 015014          302 ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEY  381 (414)
Q Consensus       302 i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~  381 (414)
                                                           +++++.+|.+++.+|++++...         ..+++++++.|.
T Consensus       197 -------------------------------------~~i~~~~~~a~~~~K~~l~~~~---------~~~l~~~l~~E~  230 (260)
T d1mj3a_         197 -------------------------------------EKIANNSKIIVAMAKESVNAAF---------EMTLTEGNKLEK  230 (260)
T ss_dssp             -------------------------------------HHHHHSCHHHHHHHHHHHHGGG---------SSCHHHHHHHHH
T ss_pred             -------------------------------------ccccchhhHHHHHHHHHHHHHH---------hCCHHHHHHHHH
Confidence                                                 3589999999999999999987         678999999999


Q ss_pred             HHHHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          382 RVALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       382 ~~~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      +.+..++.++|++|||+||+  ++|+|+|-
T Consensus       231 ~~~~~~~~s~d~~egi~aFl--eKR~P~f~  258 (260)
T d1mj3a_         231 KLFYSTFATDDRREGMSAFV--EKRKANFK  258 (260)
T ss_dssp             HHHHHGGGSHHHHHHHHHHH--TTSCCCCC
T ss_pred             HHHHHHhCCHHHHHHHHHHh--CCCCCCCC
Confidence            99999999999999999999  67888874

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-55  Score=420.04  Aligned_cols=257  Identities=18%  Similarity=0.213  Sum_probs=230.2

Q ss_pred             CccEEEEEecCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           65 EEFVKGNVHPNGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itln-rp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      |++|.+++ +++|++|+|| ||+++|+||.+|+.+|.++++.++.|+ +++|||+|.| ++||+|+|++++........ 
T Consensus         1 y~~i~v~~-~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d~-~~~vvl~g~g-~~FsaG~Dl~~~~~~~~~~~-   76 (258)
T d2fw2a1           1 YRDIVVKK-EDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADD-SKLVLFSAAG-SVFCCGLDFGYFVRHLRNDR-   76 (258)
T ss_dssp             CCSEEEEE-ETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSS-CSEEEEEECS-SCSBCCBCHHHHHHHHHHCH-
T ss_pred             CceEEEEE-ECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcCC-CEEEEEecCc-cccccccccchhhhcccccc-
Confidence            57789987 7999999997 799999999999999999999999875 6999999997 89999999999876433221 


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      ......+....++++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|.
T Consensus        77 ~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~  156 (258)
T d2fw2a1          77 NTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGK  156 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCH
T ss_pred             cchhhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCc
Confidence            11223456667788889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|++||++++ |+||+++||||+|||++++.+.+.+++.                                    
T Consensus       157 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~------------------------------------  198 (258)
T d2fw2a1         157 A-SANEMLIAGRKLT-AREACAKGLVSQVFLTGTFTQEVMIQIK------------------------------------  198 (258)
T ss_dssp             H-HHHHHHTTCCEEE-HHHHHHTTSCSEEECSTTHHHHHHHHHH------------------------------------
T ss_pred             c-ccchhhccCcccc-cccccccccccccccccccccccchhhh------------------------------------
Confidence            7 9999999999999 9999999999999999998765544433                                    


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                          +|++.||.+++.+|+.++...         ..+++++++.|.+.
T Consensus       199 ------------------------------------~i~~~~~~a~~~~K~~~~~~~---------~~~l~~~~~~e~~~  233 (258)
T d2fw2a1         199 ------------------------------------ELASYNAIVLEECKALVRCNI---------KLELEQANERECEV  233 (258)
T ss_dssp             ------------------------------------HHTTSCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred             ------------------------------------hhhhhhHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHH
Confidence                                                499999999999999999887         55799999999999


Q ss_pred             HHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          384 ALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      +..++.++|++|||+||+  ++|+|+|
T Consensus       234 ~~~~~~s~d~~Egi~af~--EKR~p~f  258 (258)
T d2fw2a1         234 LRKIWSSAQGIESMLKYV--ENKIDEF  258 (258)
T ss_dssp             HHHHHTSHHHHHHHHHHH--HSSCCCC
T ss_pred             HHHHhCCHHHHHHHHHHh--CCCCCCC
Confidence            999999999999999999  6789987

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.1e-55  Score=421.54  Aligned_cols=257  Identities=17%  Similarity=0.148  Sum_probs=230.8

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      .|+.|.++..++||++|+| ||+++|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.....   .
T Consensus         7 ~~~~i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g-~~FsaG~Dl~~~~~~~~---~   81 (263)
T d1wz8a1           7 RYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEG-GVFSAGGSFGLIEEMRA---S   81 (263)
T ss_dssp             HCTTEEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGG-GCCBCCBCHHHHHHHHH---C
T ss_pred             CCCeEEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEeccc-ccccccchhhhhhhhcc---c
Confidence            4788999887889999999 89999999999999999999999999999999999997 89999999999876421   1


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      .+....++...++++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++|.
T Consensus        82 ~~~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~  161 (263)
T d1wz8a1          82 HEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGM  161 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCH
T ss_pred             ccccccchhhhhHHHHHhhhhhcceeeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            22344566677788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|++||++++ |+||+++||||+|||++++.+.+.+++                                     
T Consensus       162 ~-~a~~l~l~g~~i~-a~eA~~~Glv~~vv~~~~l~~~a~~~a-------------------------------------  202 (263)
T d1wz8a1         162 A-KAKYHLLLNEPLT-GEEAERLGLVALAVEDEKVYEKALEVA-------------------------------------  202 (263)
T ss_dssp             H-HHHHHHHHTCCEE-HHHHHHHTSSSEEECGGGHHHHHHHHH-------------------------------------
T ss_pred             c-hhhhhcccccccc-hhHHHhcCCcccccchhhhhHHHHHHH-------------------------------------
Confidence            8 9999999999999 999999999999999988865544443                                     


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                         ++|+++||.+++.+|+++++..         ...+ +.++.|.+.
T Consensus       203 -----------------------------------~~la~~~~~al~~~K~~l~~~~---------~~~~-~~~~~e~~~  237 (263)
T d1wz8a1         203 -----------------------------------ERLAQGPKEALHHTKHALNHWY---------RSFL-PHFELSLAL  237 (263)
T ss_dssp             -----------------------------------HHHHTSCHHHHHHHHHHHHHHH---------HTTH-HHHHHHHHH
T ss_pred             -----------------------------------HHhhccHHHHHHHHHHHHHHHH---------hChH-HHHHHHHHH
Confidence                                               3599999999999999999876         3344 568999999


Q ss_pred             HHHhCCCchHHHHHHhhHhCCCCCCCCC
Q 015014          384 ALRSSLRSDFAEGVRAVLVDKDQVLSQL  411 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~dk~~~P~~~  411 (414)
                      +...+.++|++|||+||+  +||+|+||
T Consensus       238 ~~~~~~s~d~~Egi~Af~--eKR~P~f~  263 (263)
T d1wz8a1         238 EFLGFSGKELEEGLKALK--EKRPPEFP  263 (263)
T ss_dssp             HHHGGGSHHHHHHHHHHH--TTSCCCCC
T ss_pred             HHHHccCHHHHHHHHHHh--CCCCCCCC
Confidence            999999999999999999  78999996

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=7e-56  Score=424.19  Aligned_cols=263  Identities=21%  Similarity=0.262  Sum_probs=232.8

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      |++|.+++ +|+|++||||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++..........
T Consensus         2 y~~i~~~i-~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g-~~F~aG~Dl~~~~~~~~~~~~~   79 (269)
T d1nzya_           2 YEAIGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE-DAFCAGFYLREIPLDKGVAGVR   79 (269)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGSCSSSHHHHHH
T ss_pred             CCceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCc-ccccchhhHHHHhhcccccchh
Confidence            67899988 799999999999999999999999999999999999999999999997 8999999999874311100011


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      +....+....+.++.++.++||||||+|||+|+|||++|+++|||||++++++|++||.++|++|++|+++++++++|..
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~  159 (269)
T d1nzya_          80 DHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMR  159 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChh
Confidence            11222344456788899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       +++++++||+.|+ |+||+++||||+|||++++.+.+.++++                                     
T Consensus       160 -~a~~l~ltg~~i~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~-------------------------------------  200 (269)
T d1nzya_         160 -RAMELMLTNRTLY-PEEAKDWGLVSRVYPKDEFREVAWKVAR-------------------------------------  200 (269)
T ss_dssp             -HHHHHHHHCCCBC-HHHHHHHTSCSCEECHHHHHHHHHHHHH-------------------------------------
T ss_pred             -hhhhccccccccc-hhHHHHcCCccccccccccccchhhhhh-------------------------------------
Confidence             9999999999999 9999999999999998887665444433                                     


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                                                         +|++.||.+++.+|+.+++..         ..+++++++.|.+.+
T Consensus       201 -----------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~  236 (269)
T d1nzya_         201 -----------------------------------ELAAAPTHLQVMAKERFHAGW---------MQPVEECTEFEIQNV  236 (269)
T ss_dssp             -----------------------------------HHHHSCHHHHHHHHHHHHHHT---------TSCHHHHHHHHHHHH
T ss_pred             -----------------------------------hhhhhhHHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHH
Confidence                                               489999999999999999887         678999999999999


Q ss_pred             HHhCCCchHHHHHHhhHhCCCCCCCCCcCC
Q 015014          385 LRSSLRSDFAEGVRAVLVDKDQVLSQLKLE  414 (414)
Q Consensus       385 ~~~~~~~D~~eGv~afl~dk~~~P~~~~~~  414 (414)
                      ...+.++|++|||++|+  ++++|+|++.+
T Consensus       237 ~~~~~~~~~~e~v~afl--ekrkp~~~~~~  264 (269)
T d1nzya_         237 IASVTHPHFMPCLTRFL--DGHRADRPQVE  264 (269)
T ss_dssp             HHHHHSTTHHHHHHHHH--TTCCTTCCSSC
T ss_pred             HHHhcCHHHHHHHHHHH--CCCCCCcCCCC
Confidence            99999999999999999  77999998764

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-54  Score=415.77  Aligned_cols=266  Identities=18%  Similarity=0.260  Sum_probs=230.0

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      +|+++.++..+++|++||||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|+.++.........
T Consensus         1 ~y~~l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~-~~F~aG~dl~~~~~~~~~~~~   79 (275)
T d1dcia_           1 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDMASDILQPPG   79 (275)
T ss_dssp             CCSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCCBCHHHHHHHHTSCCC
T ss_pred             CCceEEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccc-cccccCccHHHhhhccccccc
Confidence            3788888766789999999999999999999999999999999999999999999986 999999999998865432221


Q ss_pred             CCc------hHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHH
Q 015014          144 TPL------VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIA  217 (414)
Q Consensus       144 ~~~------~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L  217 (414)
                      ...      ...+......++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~  159 (275)
T d1dcia_          80 DDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL  159 (275)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG
T ss_pred             ccccchhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccccccccc
Confidence            111      11233334567778999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhh
Q 015014          218 AKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKL  297 (414)
Q Consensus       218 ~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  297 (414)
                      ++++|....+.++++||+.++ |+||+++||||+|+|+++...                                     
T Consensus       160 ~~~~g~~~~~~~ll~~g~~~~-a~eA~~~Glv~~v~~~~~~l~-------------------------------------  201 (275)
T d1dcia_         160 PKVIGNRSLVNELTFTARKMM-ADEALDSGLVSRVFPDKDVML-------------------------------------  201 (275)
T ss_dssp             GGTCSCHHHHHHHHHHCCEEE-HHHHHHHTSSSEEESSHHHHH-------------------------------------
T ss_pred             ccccccccccccccccccccc-hhhhccCCCceeeeehhhhhh-------------------------------------
Confidence            999996524568999999999 999999999999999755321                                     


Q ss_pred             hHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHH
Q 015014          298 LLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVM  377 (414)
Q Consensus       298 ~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l  377 (414)
                                                        +.+.+.+++|++.||.+++.+|+.+++..         ..++++++
T Consensus       202 ----------------------------------~~~~~~a~~i~~~~p~a~~~~K~~l~~~~---------~~~l~~~~  238 (275)
T d1dcia_         202 ----------------------------------NAAFALAADISSKSPVAVQGSKINLIYSR---------DHSVDESL  238 (275)
T ss_dssp             ----------------------------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHH---------HSCHHHHH
T ss_pred             ----------------------------------hcccccccccccccHHHHHHHHHHHHHHh---------cCCHHHHH
Confidence                                              22223334699999999999999999987         67899999


Q ss_pred             HHHHHHHHHhCCCchHHHHHHhhHhCCCCCCCCCcC
Q 015014          378 KYEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQLKL  413 (414)
Q Consensus       378 ~~e~~~~~~~~~~~D~~eGv~afl~dk~~~P~~~~~  413 (414)
                      +.|.+.+..++.++|++|||+||+  +||+|+|-+|
T Consensus       239 ~~e~~~~~~~~~~~d~~Egi~Afl--eKR~pk~~~~  272 (275)
T d1dcia_         239 DYMATWNMSMLQTQDIIKSVQAAM--EKKDSKSITF  272 (275)
T ss_dssp             HHHHHHHHHHTSSHHHHHHHHHHH--TTCCGGGCCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHh--CCCCCCCCCC
Confidence            999999999999999999999999  6799999765

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-55  Score=419.40  Aligned_cols=253  Identities=17%  Similarity=0.230  Sum_probs=228.8

Q ss_pred             EecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHH
Q 015014           72 VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVF  151 (414)
Q Consensus        72 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  151 (414)
                      .+++||++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|.|++.+....     ......+.
T Consensus        11 ~~~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~-----~~~~~~~~   85 (266)
T d1hzda_          11 EENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMS-----SSEVGPFV   85 (266)
T ss_dssp             GGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSC-----HHHHHHHH
T ss_pred             EecCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccccccccccccc-----chhhhhhh
Confidence            3457899999999999999999999999999999999999999999999878999999999876421     12234466


Q ss_pred             HHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHH
Q 015014          152 TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG  231 (414)
Q Consensus       152 ~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~  231 (414)
                      ...+.++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. ++++|+
T Consensus        86 ~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~-~a~~l~  164 (266)
T d1hzda_          86 SKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMS-LAKELI  164 (266)
T ss_dssp             HHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH-HHHHHH
T ss_pred             hHHHHHHHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHH-HHHhhh
Confidence            6777889999999999999999999999999999999999999999999999999999999999999999998 999999


Q ss_pred             hcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcCCccc
Q 015014          232 MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKS  311 (414)
Q Consensus       232 ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s  311 (414)
                      +||+.++ |+||+++||||+|||++++.+.+                                                 
T Consensus       165 ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~~-------------------------------------------------  194 (266)
T d1hzda_         165 FSARVLD-GKEAKAVGLISHVLEQNQEGDAA-------------------------------------------------  194 (266)
T ss_dssp             HHTCEEE-HHHHHHHTSCSEEECCCTTSCHH-------------------------------------------------
T ss_pred             ccCCccC-HHHhhcccccccccChhhhhhHH-------------------------------------------------
Confidence            9999999 99999999999999998875422                                                 


Q ss_pred             HHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHhCCCc
Q 015014          312 VRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRS  391 (414)
Q Consensus       312 v~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~  391 (414)
                                         .+++.+.+++|+++||.+++.+|+++++..         ..+++++++.|.+.+..++.++
T Consensus       195 -------------------~~~a~~~a~~i~~~~p~a~~~~K~~l~~~~---------~~~~~~~l~~e~~~~~~~~~s~  246 (266)
T d1hzda_         195 -------------------YRKALDLAREFLPQGPVAMRVAKLAINQGM---------EVDLVTGLAIEEACYAQTIPTK  246 (266)
T ss_dssp             -------------------HHHHHHHHHTTTTSCHHHHHHHHHHHHHHH---------TSCHHHHHHHHHHHHHTTTTCH
T ss_pred             -------------------HHHHHHHHHhcccCChHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhCCH
Confidence                               345555666799999999999999999987         6789999999999999999999


Q ss_pred             hHHHHHHhhHhCCCCCCCC
Q 015014          392 DFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       392 D~~eGv~afl~dk~~~P~~  410 (414)
                      |++||++||+  ++|+|+|
T Consensus       247 d~~Eg~~AF~--eKR~P~f  263 (266)
T d1hzda_         247 DRLEGLLAFK--EKRPPRY  263 (266)
T ss_dssp             HHHHHHHHHT--TTSCCCC
T ss_pred             HHHHHHHHHh--CCCCCCC
Confidence            9999999999  7788887

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6.5e-54  Score=406.27  Aligned_cols=250  Identities=24%  Similarity=0.325  Sum_probs=223.6

Q ss_pred             EecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHH
Q 015014           72 VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVF  151 (414)
Q Consensus        72 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  151 (414)
                      +++|+|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| +.||+|+|++++.....  ........++
T Consensus         4 ie~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g-~~f~aG~dl~~~~~~~~--~~~~~~~~~~   80 (253)
T d1uiya_           4 VEKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGADLAFLERVTE--LGAEENYRHS   80 (253)
T ss_dssp             EECSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCCCHHHHHHHTT--SCHHHHHHHH
T ss_pred             EeeCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccc-ccccccchhHHhhhccc--cCcccccchh
Confidence            33678999999999999999999999999999999999999999999997 89999999998876421  1222333456


Q ss_pred             HHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHH
Q 015014          152 TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG  231 (414)
Q Consensus       152 ~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~  231 (414)
                      ...+.++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++| +|++++|++++|.. ++++|+
T Consensus        81 ~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~-~~~~~~l~~~~g~~-~a~~l~  158 (253)
T d1uiya_          81 LSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVA-ALVSVILVRAVGEK-AAKDLL  158 (253)
T ss_dssp             HHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCC-HHHHHHHHHHSCHH-HHHHHH
T ss_pred             hhhhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhccccccc-ccchhhhhcccCHH-HHHHHh
Confidence            6667788899999999999999999999999999999999999999999999999877 56788999999998 999999


Q ss_pred             hcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcCCccc
Q 015014          232 MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKS  311 (414)
Q Consensus       232 ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s  311 (414)
                      +||++++ |+||+++|||++|+|++++.+.+.+++                                             
T Consensus       159 l~g~~~~-a~eA~~~Glv~~v~~~~~~~~~a~~~a---------------------------------------------  192 (253)
T d1uiya_         159 LTGRLVE-AREAKALGLVNRIAPPGKALEEAKALA---------------------------------------------  192 (253)
T ss_dssp             HHCCEEE-HHHHHHHTSCSEEECTTCHHHHHHHHH---------------------------------------------
T ss_pred             hcCcCCC-HHHHHHhCCCcccccccccchhHHHHH---------------------------------------------
Confidence            9999999 999999999999999999865544443                                             


Q ss_pred             HHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHHHHhCCCc
Q 015014          312 VRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRS  391 (414)
Q Consensus       312 v~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~  391 (414)
                                                 +++++.||.+++.+|+++++..         ..+++++++.|.+.+...+.++
T Consensus       193 ---------------------------~~~~~~~~~a~~~~K~~l~~~~---------~~~l~~~l~~e~~~~~~~~~s~  236 (253)
T d1uiya_         193 ---------------------------EEVAKNAPTSLRLTKELLLALP---------GMGLEDGFRLAALANAWVRETG  236 (253)
T ss_dssp             ---------------------------HHHHHSCHHHHHHHHHHHHHGG---------GSCHHHHHHHHHHHHHHGGGCH
T ss_pred             ---------------------------HhhcccchHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHHHhCCH
Confidence                                       3589999999999999999876         6789999999999999999999


Q ss_pred             hHHHHHHhhHhCCCCCCCC
Q 015014          392 DFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       392 D~~eGv~afl~dk~~~P~~  410 (414)
                      |++|||+||+  +||+|+|
T Consensus       237 d~~egi~af~--eKR~P~f  253 (253)
T d1uiya_         237 DLAEGIRAFF--EKRPPRF  253 (253)
T ss_dssp             HHHHHHHHHH--TTSCCCC
T ss_pred             HHHHHHHHHh--CCCCCCC
Confidence            9999999999  6789987

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-54  Score=412.39  Aligned_cols=257  Identities=18%  Similarity=0.224  Sum_probs=219.4

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC-CCCCccCCCChhhHHHHhhhC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS-GPRAFCAGMDIKGVVAEIQKD  141 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~-g~~~FcaG~Dl~~~~~~~~~~  141 (414)
                      |+|++|.++. +|+|++|+||||+++|+||.+|+.+|.++++.+++ +++++|||+|. |+++||+|+||+++.....  
T Consensus         1 M~~~~i~~~~-~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~~-~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~--   76 (261)
T d1ef8a_           1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNR-PEIRCIILRAPSGSKVFSAGHDIHELPSGGR--   76 (261)
T ss_dssp             CCCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCS-TTCCEEEEECCTTCSEEECCSCSTTC-------
T ss_pred             CCCCEEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeccccchhhcccccccccccCCc--
Confidence            5789999997 89999999999999999999999999999999985 57999999985 4579999999999875321  


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCC
Q 015014          142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP  221 (414)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~  221 (414)
                      ....    +....+.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|.+
T Consensus        77 ~~~~----~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~  152 (261)
T d1ef8a_          77 DPLS----YDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDA  152 (261)
T ss_dssp             CTTC----TTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSS
T ss_pred             cccc----cccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhccccccccccccccccccc
Confidence            1111    223345678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHH
Q 015014          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ  301 (414)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  301 (414)
                      |.. +++++++||+.++ |+||+++||||+++|++++.+.+.++                                    
T Consensus       153 g~~-~a~~~~l~g~~~~-a~eA~~~Glv~~vv~~~~~~~~a~~~------------------------------------  194 (261)
T d1ef8a_         153 GFH-IVKELIFTASPIT-AQRALAVGILNHVVEVEELEDFTLQM------------------------------------  194 (261)
T ss_dssp             CHH-HHHHHHHHCCCEE-HHHHHHTTSCSEEECHHHHHHHHHHH------------------------------------
T ss_pred             Ccc-ccccccccCceEc-HHHHHHcCCcceeeechhhhhhhHHH------------------------------------
Confidence            998 9999999999999 99999999999999988775544333                                    


Q ss_pred             HHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHH
Q 015014          302 ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEY  381 (414)
Q Consensus       302 i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~  381 (414)
                                                          +++|++.||.+++.+|+.++...+.       .....+.++.+.
T Consensus       195 ------------------------------------a~~la~~~~~a~~~~K~~l~~~~~~-------~~~~~~~~e~~~  231 (261)
T d1ef8a_         195 ------------------------------------AHHISEKAPLAIAVIKEELRVLGEA-------HTMNSDEFERIQ  231 (261)
T ss_dssp             ------------------------------------HHHHTTSCHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHH
T ss_pred             ------------------------------------HHHHHhcCcHHHHHHHHHHHHHHhc-------CchhHHHHHHHH
Confidence                                                3459999999999999999987621       223345666677


Q ss_pred             HHHHHhCCCchHHHHHHhhHhCCCCCCCC
Q 015014          382 RVALRSSLRSDFAEGVRAVLVDKDQVLSQ  410 (414)
Q Consensus       382 ~~~~~~~~~~D~~eGv~afl~dk~~~P~~  410 (414)
                      ..+..++.++|++|||+||+  +||+|+|
T Consensus       232 ~~~~~~~~s~D~~Egi~Afl--eKR~P~f  258 (261)
T d1ef8a_         232 GMRRAVYDSEDYQEGMNAFL--EKRKPNF  258 (261)
T ss_dssp             HHHHHHHTSHHHHHHHHHHH--TTSCCCC
T ss_pred             HHHHHHhCCHHHHHHHHHHh--CCCCCcC
Confidence            77778889999999999999  6788886

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.8e-52  Score=403.67  Aligned_cols=266  Identities=16%  Similarity=0.134  Sum_probs=215.8

Q ss_pred             cCCCccEEEEEe-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC------CCCccCCCChhhH
Q 015014           62 AGAEEFVKGNVH-PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSG------PRAFCAGMDIKGV  134 (414)
Q Consensus        62 ~~~~~~v~~~~~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g------~~~FcaG~Dl~~~  134 (414)
                      .+.++.|+|+.. ++||++||||||+++|+||.+|+.+|.++++.+++|+++|+|||+|.|      ++.||+|.|++..
T Consensus        14 ~~~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~   93 (297)
T d1q52a_          14 FDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIR   93 (297)
T ss_dssp             CTTCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-----
T ss_pred             cCCCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhh
Confidence            355677889863 689999999999999999999999999999999999999999999984      3577888888765


Q ss_pred             HHHhhhC------CCCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCC-eeEecccccCCC
Q 015014          135 VAEIQKD------RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGL  207 (414)
Q Consensus       135 ~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~-a~f~~pe~~~Gl  207 (414)
                      .......      ...+.........+.+...|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl  173 (297)
T d1q52a_          94 GRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGS  173 (297)
T ss_dssp             ------------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTC
T ss_pred             cccccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeecccc
Confidence            4321110      011112223334556788899999999999999999999999999999999875 579999999999


Q ss_pred             CCChhHHHHHhhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcC
Q 015014          208 FPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSS  287 (414)
Q Consensus       208 ~P~~g~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~  287 (414)
                      +|++|++++|+|++|.+ +++++++||+.++ |+||+++|||++|||++++++.+.++++                    
T Consensus       174 ~p~~~~~~~L~r~iG~~-~a~~llltg~~~~-a~eA~~~Glv~~vv~~~el~~~~~~~a~--------------------  231 (297)
T d1q52a_         174 FDGGYGSAYLARQVGQK-FAREIFFLGRTYT-AEQMHQMGAVNAVAEHAELETVGLQWAA--------------------  231 (297)
T ss_dssp             CCCSTTTHHHHHHHCHH-HHHHHHHHCCEEC-HHHHHHHTSCSEEECGGGHHHHHHHHHH--------------------
T ss_pred             ccccccccccccccCcc-ceeeccccccccc-hHhhhhhccccccCchHHhhHHHHHHhh--------------------
Confidence            99999999999999998 9999999999999 9999999999999999988765544433                    


Q ss_pred             CCCCcchhhhhHHHHHhhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCC
Q 015014          288 DPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTD  367 (414)
Q Consensus       288 ~~~~~~~~~~~~~~i~~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~  367 (414)
                                                                          +|++.||.+++.+|+.++...       
T Consensus       232 ----------------------------------------------------~l~~~~~~a~~~~K~~~~~~~-------  252 (297)
T d1q52a_         232 ----------------------------------------------------EINAKSPQAQRMLKFAFNLLD-------  252 (297)
T ss_dssp             ----------------------------------------------------HHHTSCHHHHHHHHHHHHHTT-------
T ss_pred             ----------------------------------------------------hhccCCHHHHHHHHHHHHHhh-------
Confidence                                                                499999999999999998753       


Q ss_pred             cccCCHHHHHHHHHHHHHHhCCCchHHHHHHhhHhCCCCCCCCCcC
Q 015014          368 NELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQVLSQLKL  413 (414)
Q Consensus       368 ~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~afl~dk~~~P~~~~~  413 (414)
                         ..+.+....|.+.+..++.++|++|||+||+  +||+|+|-++
T Consensus       253 ---~~~~~~~~~~~~~~~~~~~s~d~~Egv~AF~--eKR~P~f~~~  293 (297)
T d1q52a_         253 ---DGLVGQQLFAGEATRLAYMTDEAVEGRDAFL--QKRPPDWSPF  293 (297)
T ss_dssp             ---THHHHHHHHHHHHHHHHHTSHHHHHHHHHHH--TTSCCCCTTS
T ss_pred             ---cChHHHHHHHHHHHHHHhcCHHHHHHHHHHh--CCCCCCCCCC
Confidence               3566666678888888889999999999999  6788998664

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-51  Score=383.78  Aligned_cols=243  Identities=19%  Similarity=0.235  Sum_probs=211.0

Q ss_pred             CccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCC
Q 015014           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (414)
                      |++|.+++ +|+|++|+||||+++|+||.+|+.+|.++++.++.|+.+ +||++|.| ++||+|+|++++...... ...
T Consensus         2 ~~~i~~~~-~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g-~~F~aG~Dl~~~~~~~~~-~~~   77 (245)
T d2f6qa1           2 FETLVVTS-EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNG-DYYSSGNDLTNFTDIPPG-GVE   77 (245)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEEST-TCSBCCBCC----CCCTT-HHH
T ss_pred             cceEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCC-ccccCCccchhhhccccc-ccc
Confidence            67899997 789999999999999999999999999999999999876 89999987 899999999998652110 001


Q ss_pred             CchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcH
Q 015014          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (414)
Q Consensus       145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~  224 (414)
                      ..........++++.+|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++.+|..
T Consensus        78 ~~~~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~  157 (245)
T d2f6qa1          78 EKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPA  157 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHH
T ss_pred             cccchhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccc
Confidence            11222344445788899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHh
Q 015014          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (414)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  304 (414)
                       ++++|++||+.++ |+||+++||||+|+|++++++.+.++++                                     
T Consensus       158 -~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~-------------------------------------  198 (245)
T d2f6qa1         158 -KATEMLIFGKKLT-AGEACAQGLVTEVFPDSTFQKEVWTRLK-------------------------------------  198 (245)
T ss_dssp             -HHHHHHTTCCCEE-HHHHHHTTSCSEEECTTTHHHHHHHHHH-------------------------------------
T ss_pred             -hhhhhcccccccc-cccccccccccccCCcchHHHHHHHHHH-------------------------------------
Confidence             9999999999999 9999999999999999998766555443                                     


Q ss_pred             hcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHHH
Q 015014          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA  384 (414)
Q Consensus       305 ~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~  384 (414)
                                                         +|++.||.+++.+|+++++..         ...+++.++.|.+.+
T Consensus       199 -----------------------------------~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~  234 (245)
T d2f6qa1         199 -----------------------------------AFAKLPPNALRISKEVIRKRE---------REKLHAVNAEECNVL  234 (245)
T ss_dssp             -----------------------------------HHTTSCHHHHHHHHHHHHGGG---------HHHHHHHHHHHHHHH
T ss_pred             -----------------------------------HHHcCCHHHHHHHHHHHHhhh---------hcCHHHHHHHHHHHH
Confidence                                               499999999999999999876         457899999999999


Q ss_pred             HHhCCCchHH
Q 015014          385 LRSSLRSDFA  394 (414)
Q Consensus       385 ~~~~~~~D~~  394 (414)
                      ..++.++|++
T Consensus       235 ~~~~~s~d~~  244 (245)
T d2f6qa1         235 QGRWLSDECT  244 (245)
T ss_dssp             HHHHTSHHHH
T ss_pred             HHHhcCcccC
Confidence            9999999986

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=2.5e-49  Score=385.96  Aligned_cols=291  Identities=15%  Similarity=0.170  Sum_probs=228.7

Q ss_pred             CccEEEEEecCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           65 EEFVKGNVHPNGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        65 ~~~v~~~~~~~~V~~Itln-rp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      ++.|.++..++||++|+|| ||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++......  .
T Consensus         5 ~~~i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~--~   81 (310)
T d1wdka4           5 GKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGK-DVFIVGADITEFVENFKL--P   81 (310)
T ss_dssp             CSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SSSBBCCCHHHHHHHTTS--C
T ss_pred             CceEEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccchhhhhhhhhcccc--c
Confidence            4678888778899999998 89999999999999999999999999999999999987 899999999998764311  1


Q ss_pred             CCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCc
Q 015014          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      ...........++++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|.
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~  161 (310)
T d1wdka4          82 DAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGV  161 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCH
T ss_pred             chhhhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhh
Confidence            11122233345678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|++||+.++ |+||+++||||+|||++++.+.+.+++++.........-..   ..........          
T Consensus       162 ~-~a~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~---~~~~~~~~~~----------  226 (310)
T d1wdka4         162 D-NAVEWIASGKENR-AEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKR---QPKLEKLKLN----------  226 (310)
T ss_dssp             H-HHHHHHHHCCCEE-HHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHH---GGGGSCCSCC----------
T ss_pred             h-hhhhhhccccccC-HHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccchhhhh---hhhccccccc----------
Confidence            8 9999999999999 99999999999999999999999988877543322210000   0000000000          


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                             .++..+.             .+..+..+.........+...+.+.+..+.         ..+++++++.|.+.
T Consensus       227 -------~~~~~~~-------------~~~~~~~~~~~~~~~~pA~~~~l~~v~~~~---------~~~~~~~L~~E~~~  277 (310)
T d1wdka4         227 -------AIEQMMA-------------FETAKGFVAGQAGPNYPAPVEAIKTIQKAA---------NFGRDKALEVEAAG  277 (310)
T ss_dssp             -------HHHHHHH-------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCCHHHHHHHHHHH
T ss_pred             -------chhhhHH-------------HHHhhhhhhhhccCCChHHHHHHHHHHHHh---------CCCHHHHHHHHHHH
Confidence                   1111000             111111222233344345556678888876         67899999999999


Q ss_pred             HHHhCCCchHHHHHHhhHh
Q 015014          384 ALRSSLRSDFAEGVRAVLV  402 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~afl~  402 (414)
                      +..++.+++.+++|++|+.
T Consensus       278 f~~l~~t~~a~~~i~aF~~  296 (310)
T d1wdka4         278 FAKLAKTSASNCLIGLFLN  296 (310)
T ss_dssp             HHHHHTSHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHh
Confidence            9999999999999999984

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=7.6e-50  Score=373.75  Aligned_cols=226  Identities=20%  Similarity=0.183  Sum_probs=198.5

Q ss_pred             EEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchH
Q 015014           69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP  148 (414)
Q Consensus        69 ~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~  148 (414)
                      +++..+|+|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++....    ..+...
T Consensus         2 ~~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~----~~~~~~   77 (230)
T d2a7ka1           2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLS----RSEDIE   77 (230)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-----CHHHHH
T ss_pred             EEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccc----cccccc
Confidence            4555689999999999999999999999999999999999999999999998878999999999987532    112334


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHH
Q 015014          149 KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGA  228 (414)
Q Consensus       149 ~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~  228 (414)
                      .+.....+++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+ .+|++++|.. +++
T Consensus        78 ~~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~-~~l~~~iG~~-~a~  155 (230)
T d2a7ka1          78 EWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA-AILGFTHGFS-TMQ  155 (230)
T ss_dssp             HHHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHH-HHHHHHHCHH-HHH
T ss_pred             cchhhhhhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccccc-cccccccccc-ccc
Confidence            56677778899999999999999999999999999999999999999999999999999998775 5799999998 999


Q ss_pred             HHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHHhhcCC
Q 015014          229 YLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSS  308 (414)
Q Consensus       229 ~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~  308 (414)
                      +|++||+.++ |+||+++||||+|||++++.+.+.+++                                          
T Consensus       156 ~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a------------------------------------------  192 (230)
T d2a7ka1         156 EIIYQCQSLD-APRCVDYRLVNQVVESSALLDAAITQA------------------------------------------  192 (230)
T ss_dssp             HHHHHCCCBC-HHHHHHHTCCSEEECHHHHHHHHHHHH------------------------------------------
T ss_pred             ccccccccch-HHHHHHhhhcccCCChHHHHHHHHHHH------------------------------------------
Confidence            9999999999 999999999999999887765544443                                          


Q ss_pred             cccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHH
Q 015014          309 EKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR  382 (414)
Q Consensus       309 ~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~  382 (414)
                                                    ++|++.||.+++.+|+++++..         ...+++.++.|..
T Consensus       193 ------------------------------~~ia~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~~~a  227 (230)
T d2a7ka1         193 ------------------------------HVMASYPASAFINTKRAVNKPF---------IHLLEQTRDASKA  227 (230)
T ss_dssp             ------------------------------HHHHTSCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred             ------------------------------HHHHcCCHHHHHHHHHHHHHHH---------hccHHHHHHHHHH
Confidence                                          3599999999999999999876         4567887776654

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=1.5e-49  Score=376.03  Aligned_cols=243  Identities=17%  Similarity=0.224  Sum_probs=215.9

Q ss_pred             cEEEEEe-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCC
Q 015014           67 FVKGNVH-PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (414)
Q Consensus        67 ~v~~~~~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (414)
                      .|.++.. ++||++||||||+ .|+||.+|+.+|.++++.+++|+++++|||+|.|+++||+|+|++++...     ...
T Consensus         3 ~ilve~~~~~gIa~itln~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~-----~~~   76 (249)
T d1sg4a1           3 RVLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGR-----SPA   76 (249)
T ss_dssp             SEEEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSC-----CHH
T ss_pred             cEEEEEECCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEeccccccccccc-----ccc
Confidence            4566653 5789999999997 59999999999999999999999999999999986789999999987531     222


Q ss_pred             chHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeE--ecccccCCCCCChhHHHHHhhCCCc
Q 015014          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL--AMPENGIGLFPDVGFSYIAAKGPGG  223 (414)
Q Consensus       146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f--~~pe~~~Gl~P~~g~~~~L~r~~G~  223 (414)
                      ....++...++++.++.++|||+||+|||+|+|||++|+++|||||++++++|  ++||+++|++|++|++++|++++|.
T Consensus        77 ~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~  156 (249)
T d1sg4a1          77 HYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGH  156 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCH
T ss_pred             cccccchhhHHHHHhhhcCccccchhhcccccccccccccccccceeecccccccccccccccccccccccccccccccc
Confidence            34456777778999999999999999999999999999999999999999876  7899999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHhhcCCCCCcchhhhhHHHHH
Q 015014          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (414)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~  303 (414)
                      . ++++|++||++++ |++|+++||||+++|++++.+.+.++++                                    
T Consensus       157 ~-~a~~lll~g~~~~-a~~A~~~Glv~~v~~~~~l~~~a~~~a~------------------------------------  198 (249)
T d1sg4a1         157 R-AAERALQLGLLFP-PAEALQVGIVDQVVPEEQVQSTALSAIA------------------------------------  198 (249)
T ss_dssp             H-HHHHHHHHTCCBC-HHHHHHHTSSSEEECGGGHHHHHHHHHH------------------------------------
T ss_pred             c-ccccccccccccc-HHHHHhhccccccCChHHHHHHHHHHHH------------------------------------
Confidence            8 9999999999999 9999999999999999888765544433                                    


Q ss_pred             hhcCCcccHHHHHHHHHhccCccccchHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhcCCCCcccCCHHHHHHHHHHH
Q 015014          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV  383 (414)
Q Consensus       304 ~~F~~~~sv~~i~~~L~~~~~~~~~~~~~~a~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~  383 (414)
                                                          ++++.||.+++.+|+++++..         ...+.+.++.|.+.
T Consensus       199 ------------------------------------~l~~~~~~a~~~~K~~~~~~~---------~~~l~~~~~~e~~~  233 (249)
T d1sg4a1         199 ------------------------------------QWMAIPDHARQLTKAMMRKAT---------ASRLVTQRDADVQN  233 (249)
T ss_dssp             ------------------------------------HHHTSCHHHHHHHHHHHHHHH---------HHHHHTTHHHHHHH
T ss_pred             ------------------------------------HHHcCCHHHHHHHHHHHHHHH---------hCCHHHHHHHHHHH
Confidence                                                489999999999999999877         45788899999999


Q ss_pred             HHHhCCCchHHHHHH
Q 015014          384 ALRSSLRSDFAEGVR  398 (414)
Q Consensus       384 ~~~~~~~~D~~eGv~  398 (414)
                      +...+.++|++|||+
T Consensus       234 ~~~~~~~e~~~~~le  248 (249)
T d1sg4a1         234 FVSFISKDSIQKSLQ  248 (249)
T ss_dssp             HHHHHTSHHHHHHHT
T ss_pred             HHHHhCCHHHHHhcC
Confidence            999999999999985

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-48  Score=371.01  Aligned_cols=192  Identities=19%  Similarity=0.194  Sum_probs=168.7

Q ss_pred             CCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCC
Q 015014           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (414)
Q Consensus        64 ~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (414)
                      +++.|.++. +|+|++|+||||+++|++|.+|+.+|.++++.+++|+++++|||+|.| ++||+|+||+++.........
T Consensus         3 ~~e~i~~~~-~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g-~~FsaG~Dl~~~~~~~~~~~~   80 (266)
T d1pjha_           3 QNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG-RFFSSGADFKGIAKAQGDDTN   80 (266)
T ss_dssp             CBTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCCBCHHHHHC-------
T ss_pred             CCCeEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccc-cccccchhHHHHHhccccccc
Confidence            468899998 799999999999999999999999999999999999999999999997 899999999998754322111


Q ss_pred             C--C----chHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcC-CeeEecccccCCCCCChhHHHH
Q 015014          144 T--P----LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE-KTLLAMPENGIGLFPDVGFSYI  216 (414)
Q Consensus       144 ~--~----~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~-~a~f~~pe~~~Gl~P~~g~~~~  216 (414)
                      .  .    ....++...+.++..+.++||||||+|||+|+|||++|+++||||||++ +++|++||+++|++|++|++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~  160 (266)
T d1pjha_          81 KYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVS  160 (266)
T ss_dssp             CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccccccccc
Confidence            1  1    1223455556788899999999999999999999999999999999975 5789999999999999999999


Q ss_pred             HhhCCCcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHH
Q 015014          217 AAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG  259 (414)
Q Consensus       217 L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (414)
                      |+|++|.+ ++++|++||+.++ |+||+++|||++|++++++.
T Consensus       161 l~r~~g~~-~a~~llltg~~~~-a~eA~~~Glv~~v~~~~~~~  201 (266)
T d1pjha_         161 LPLKFGTN-TTYECLMFNKPFK-YDIMCENGFISKNFNMPSSN  201 (266)
T ss_dssp             HHHHHCHH-HHHHHHHTTCCEE-HHHHHHTTCCSEECCCCTTC
T ss_pred             cccccccc-hhhhhhccCCcCC-HHHHHHCCCEeEeeCchhhh
Confidence            99999998 9999999999999 99999999999999877654

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=1.2e-46  Score=355.98  Aligned_cols=194  Identities=16%  Similarity=0.201  Sum_probs=173.0

Q ss_pred             CCCccEEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCC
Q 015014           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (414)
Q Consensus        63 ~~~~~v~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (414)
                      +.|++|++++ +|+|++||||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++...     
T Consensus        10 ~~y~~i~~~~-~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g-~~FsaG~Dl~~~~~~-----   82 (249)
T d1szoa_          10 QKYENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTG-PSFCNEIDFTSFNLG-----   82 (249)
T ss_dssp             TSCTTEEEEE-ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCEECGGGSCCS-----
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeeccc-ccccccchhhhhhcc-----
Confidence            4689999997 799999999999999999999999999999999999999999999997 899999999987431     


Q ss_pred             CCCchHHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEe-cccccCCCCCChhHHHHHhhCC
Q 015014          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA-MPENGIGLFPDVGFSYIAAKGP  221 (414)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~-~pe~~~Gl~P~~g~~~~L~r~~  221 (414)
                      .......+....+.++..+.++||||||+|||+|. ||++|+++||+||++++++|. +||+++|++|++|++++|+|++
T Consensus        83 ~~~~~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~-GG~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~i  161 (249)
T d1szoa_          83 TPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVL  161 (249)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhcccCcccceeeeccccc-cccccccccccccccCCcEEEEeecccccccccccccccccccc
Confidence            12234456666778899999999999999999885 577999999999999999995 7999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCHHHHHHHHH
Q 015014          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALL  266 (414)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~  266 (414)
                      |.. ++++|++||++++ |+||+++||||+|||++++.+.+.+++
T Consensus       162 g~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a  204 (249)
T d1szoa_         162 GSN-RGRYFLLTGQELD-ARTALDYGAVNEVLSEQELLPRAWELA  204 (249)
T ss_dssp             CHH-HHHHHHHTTCEEE-HHHHHHHTSCSEEECHHHHHHHHHHHH
T ss_pred             Ccc-ceeeecccCCCCC-HHHHHHhCCcCcccCHHHHHHHHHHHH
Confidence            998 9999999999999 999999999999999887765444443

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.99  E-value=1.3e-05  Score=69.44  Aligned_cols=136  Identities=11%  Similarity=0.045  Sum_probs=87.8

Q ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCc
Q 015014           91 MNLDMDIKYKSFLDEWESD---PRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (414)
Q Consensus        91 l~~~m~~eL~~~l~~~~~d---~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP  167 (414)
                      +|.++..++...|..++.+   +.+.+ .|.+.|       +|+....                    .++..+..++.|
T Consensus        22 I~~~~~~~~i~~l~~l~~~~~~~~I~l-~InS~G-------G~v~~gl--------------------~i~d~i~~~~~~   73 (179)
T d2cbya1          22 VNDEIANRLCAQILLLAAEDASKDISL-YINSPG-------GSISAGM--------------------AIYDTMVLAPCD   73 (179)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEE-EEEECC-------BCHHHHH--------------------HHHHHHHHCSSC
T ss_pred             ECHHHHHHHHHHHHHHhccCCCCeEEE-EeeCCC-------CCHHHHH--------------------HHHHHHHhhccc
Confidence            6888999888877655432   23333 445544       4443221                    344567789999


Q ss_pred             EEEEECCccccchhhhhccCC--eEEEcCCeeEecccccCCCCCChhHHH---------------HHhhCCCcH-HHHHH
Q 015014          168 YISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAKGPGGG-SVGAY  229 (414)
Q Consensus       168 vIAavnG~a~GgG~~Lala~D--~ria~~~a~f~~pe~~~Gl~P~~g~~~---------------~L~r~~G~~-~~a~~  229 (414)
                      |...+.|.|.+.|+-+.+++|  .|++.++++|-+.+...|+.-...-..               .+.+.-|.. ..-..
T Consensus        74 v~t~~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~  153 (179)
T d2cbya1          74 IATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEA  153 (179)
T ss_dssp             EEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             eeeehhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            999999999999999999999  799999999999887655421111000               122222332 02234


Q ss_pred             HHhcCCCCCcHHHHHHcCccceecCC
Q 015014          230 LGMTGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       230 l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      ++-.-.-++ |+||+++||||+|+.+
T Consensus       154 ~~~~d~~l~-a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         154 DSDRDRWFT-AAEALEYGFVDHIITR  178 (179)
T ss_dssp             HHHTTCEEE-HHHHHHHTSCSEECSC
T ss_pred             hhcCCceec-HHHHHHcCCCcEEecC
Confidence            445555677 9999999999999864

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=1.1e-05  Score=70.10  Aligned_cols=137  Identities=14%  Similarity=0.024  Sum_probs=89.8

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcE
Q 015014           91 MNLDMDIKYKSFLDEWESDPRVK--CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (414)
Q Consensus        91 l~~~m~~eL~~~l~~~~~d~~v~--~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPv  168 (414)
                      ++.++...+...+..++.++..+  .+.|.+.|       +|+..-                    ..++..|..++.||
T Consensus        25 I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G-------G~v~~g--------------------~~i~d~i~~~~~~v   77 (183)
T d1yg6a1          25 VEDHMANLIVAQMLFLEAENPEKDIYLYINSPG-------GVITAG--------------------MSIYDTMQFIKPDV   77 (183)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC-------BCHHHH--------------------HHHHHHHHHSSSCE
T ss_pred             ECHHHHHHHHHHHHHhhhhccCCceEEEEeCCC-------ccHHHH--------------------HHHHHHHHhCCCCE
Confidence            67888999888888776433222  23345544       454322                    13455788899999


Q ss_pred             EEEECCccccchhhhhccCC--eEEEcCCeeEecccccCCCCCChhHHH---------------HHhhCCCcHH-HHHHH
Q 015014          169 ISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAKGPGGGS-VGAYL  230 (414)
Q Consensus       169 IAavnG~a~GgG~~Lala~D--~ria~~~a~f~~pe~~~Gl~P~~g~~~---------------~L~r~~G~~~-~a~~l  230 (414)
                      +..+.|.|.+.|.-+.+++|  .|++.+++.|-+.+...|..-...-..               .+.+..|... .-.++
T Consensus        78 ~tv~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~~  157 (183)
T d1yg6a1          78 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERD  157 (183)
T ss_dssp             EEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EEEEEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            99999999999999999998  799999999998887655421111100               1111223220 22233


Q ss_pred             HhcCCCCCcHHHHHHcCccceecCC
Q 015014          231 GMTGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       231 ~ltG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      +-.-.-++ |+||+++||||+|+..
T Consensus       158 ~~~d~~lt-a~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         158 TERDRFLS-APEAVEYGLVDSILTH  181 (183)
T ss_dssp             TSSCEEEE-HHHHHHHTSSSEECCC
T ss_pred             hccCcccc-HHHHHHcCCCcEEecc
Confidence            32223367 9999999999999964

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.78  E-value=9.5e-05  Score=64.48  Aligned_cols=137  Identities=12%  Similarity=0.091  Sum_probs=88.1

Q ss_pred             CCCHHHHHHHHHHHHHHhc-CC--CceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCC
Q 015014           90 AMNLDMDIKYKSFLDEWES-DP--RVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK  166 (414)
Q Consensus        90 al~~~m~~eL~~~l~~~~~-d~--~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k  166 (414)
                      .++.++...+...+..++. |+  .+. +.|.+.|       +|+...                    ..++..+..++.
T Consensus        32 ~I~~~~~~~~~~~l~~l~~~~~~~~I~-l~InS~G-------G~v~~g--------------------lai~d~i~~~~~   83 (192)
T d1y7oa1          32 PVEDNMANSVIAQLLFLDAQDSTKDIY-LYVNTPG-------GSVSAG--------------------LAIVDTMNFIKA   83 (192)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTSCEE-EEEEECC-------BCHHHH--------------------HHHHHHHHHSSS
T ss_pred             EEchHHHHHHHHHHHHhhhhcccCcee-eeecCCC-------CCHHHH--------------------HHHHHHHHhcCc
Confidence            4788999988888876653 22  233 3446655       343321                    234557888999


Q ss_pred             cEEEEECCccccchhhhhcc--CCeEEEcCCeeEecccccCCCCCChhHH-------H----------HHhhCCCcH-HH
Q 015014          167 PYISLMDGVTMGFGIGISGH--GRYRIVTEKTLLAMPENGIGLFPDVGFS-------Y----------IAAKGPGGG-SV  226 (414)
Q Consensus       167 PvIAavnG~a~GgG~~Lala--~D~ria~~~a~f~~pe~~~Gl~P~~g~~-------~----------~L~r~~G~~-~~  226 (414)
                      ||...+.|.|.+.|.-|.++  +|.|++.++++|-+.+...|........       .          .+.+..|.. ..
T Consensus        84 ~v~t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~  163 (192)
T d1y7oa1          84 DVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEK  163 (192)
T ss_dssp             CEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred             ceEEEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            99999999999999888776  5799999999999988876653221111       0          011111221 12


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCC
Q 015014          227 GAYLGMTGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      -.+.+-...-++ |+||+++||||+|+..
T Consensus       164 i~~~~~rd~~ls-a~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         164 VHADAERDNWMS-AQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHHHHHSCCCBC-HHHHHHHTSCSEECCC
T ss_pred             HHHhhcCCceec-HHHHHHcCCCcEEecC
Confidence            334445555688 9999999999999864

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=97.64  E-value=0.00028  Score=61.45  Aligned_cols=136  Identities=13%  Similarity=0.051  Sum_probs=89.6

Q ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCc
Q 015014           91 MNLDMDIKYKSFLDEWESD---PRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (414)
Q Consensus        91 l~~~m~~eL~~~l~~~~~d---~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP  167 (414)
                      +|.++...+...+..++..   ..+... |.+.|       +|+..                    ...++..+..++.|
T Consensus        35 I~~~~~~~~i~~l~~l~~~~~~~~I~l~-InS~G-------G~v~~--------------------g~~i~d~i~~~~~~   86 (193)
T d1tg6a1          35 IDDSVASLVIAQLLFLQSESNKKPIHMY-INSPG-------GVVTA--------------------GLAIYDTMQYILNP   86 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEE-EEECC-------BCHHH--------------------HHHHHHHHHHSCSC
T ss_pred             EchHHHHHHHHHHHHhcccCCCcEEEEE-eecCc-------ccHHH--------------------HHHHHHHHHhhcCc
Confidence            6788888888777766642   234443 36655       23321                    12345577889999


Q ss_pred             EEEEECCccccchhhhhccCC--eEEEcCCeeEecccccCCCCCChhHHH---------------HHhhCCCcH-HHHHH
Q 015014          168 YISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAKGPGGG-SVGAY  229 (414)
Q Consensus       168 vIAavnG~a~GgG~~Lala~D--~ria~~~a~f~~pe~~~Gl~P~~g~~~---------------~L~r~~G~~-~~a~~  229 (414)
                      |...+.|.|.+.|..|.+++|  .|++.++++|-+.+...|..-...-..               .+....|.. ..-..
T Consensus        87 V~tv~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~  166 (193)
T d1tg6a1          87 ICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIES  166 (193)
T ss_dssp             EEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             eEEEEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            999999999999999999999  599999999999888766532111100               111112221 02233


Q ss_pred             HHhcCCCCCcHHHHHHcCccceecCC
Q 015014          230 LGMTGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       230 l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      ++-.-.-++ |+||+++||||+|+..
T Consensus       167 ~~~rD~~lt-a~EAl~yGliD~Ii~~  191 (193)
T d1tg6a1         167 AMERDRYMS-PMEAQEFGILDKVLVH  191 (193)
T ss_dssp             HHSSCEEEC-HHHHHHHTSCSEECSS
T ss_pred             HhccCccCC-HHHHHHcCCCCEEccC
Confidence            333233477 9999999999999853

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.59  E-value=0.00023  Score=61.89  Aligned_cols=136  Identities=11%  Similarity=-0.003  Sum_probs=90.3

Q ss_pred             CCHHHHHHHHHHHHHHhcC--CCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcE
Q 015014           91 MNLDMDIKYKSFLDEWESD--PRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (414)
Q Consensus        91 l~~~m~~eL~~~l~~~~~d--~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPv  168 (414)
                      +|.++..++...+..++..  +.+. +.|.+.|       +|+...                    ..++..+..++.||
T Consensus        27 Id~~~~~~~i~~l~~l~~~~~~~I~-l~INS~G-------G~v~~g--------------------~ai~d~i~~~~~~v   78 (190)
T d2f6ia1          27 INKKTADELISQLLYLDNINHNDIK-IYINSPG-------GSINEG--------------------LAILDIFNYIKSDI   78 (190)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCCSCEE-EEEEECC-------BCHHHH--------------------HHHHHHHHHSSSCE
T ss_pred             eCHHHHHHHHHHHHHHhccCCCCeE-EEEeCch-------hhhhHH--------------------HHHHHHHHhhCCce
Confidence            7888889888888777542  2343 3345544       444322                    13445677899999


Q ss_pred             EEEECCccccchhhhhccCC--eEEEcCCeeEecccccCCCCCChhHH----H-----------HHhhCCCcHH-HHHHH
Q 015014          169 ISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFS----Y-----------IAAKGPGGGS-VGAYL  230 (414)
Q Consensus       169 IAavnG~a~GgG~~Lala~D--~ria~~~a~f~~pe~~~Gl~P~~g~~----~-----------~L~r~~G~~~-~a~~l  230 (414)
                      ...+.|.|.+.|..++++++  .|++.++++|-+.+...|..-...-.    .           .+.+.-|... .-.++
T Consensus        79 ~tv~~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~  158 (190)
T d2f6ia1          79 QTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKD  158 (190)
T ss_dssp             EEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EEEEeccccchhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHh
Confidence            99999999999999999988  69999999999998876653111100    0           1222223220 12223


Q ss_pred             HhcCCCCCcHHHHHHcCccceecCC
Q 015014          231 GMTGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       231 ~ltG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      +-.-.-++ |+||+++||||+|+..
T Consensus       159 ~~~d~~l~-a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         159 SDRDYYMN-ALEAKQYGIIDEVIET  182 (190)
T ss_dssp             HHTTCEEC-HHHHHHHTSCSEECCC
T ss_pred             ccCCeeec-HHHHHHcCCCcEEccc
Confidence            33334477 9999999999999964

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.0013  Score=61.19  Aligned_cols=151  Identities=13%  Similarity=0.041  Sum_probs=101.7

Q ss_pred             cEEEEEEcCCCC--------CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCch
Q 015014           76 GVAVITLDRPKA--------LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (414)
Q Consensus        76 ~V~~Itlnrp~~--------~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (414)
                      .|.+|--.+...        .-+++++-.+.-.+.++.++.-. +-+|-|.-. |+ |-.|.+-.+..            
T Consensus       109 ~V~vIg~~kg~~~~~~~~~n~G~~~p~~~rKa~r~~~~a~~~~-~Pii~~vDt-pG-~~~g~~~E~~g------------  173 (316)
T d2f9ya1         109 PVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFK-MPIITFIDT-PG-AYPGVGAEERG------------  173 (316)
T ss_dssp             EEEEEEECCCSSTTHHHHTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEE-SC-SCCSHHHHHTT------------
T ss_pred             eEEEEEeecCCCcccccccccccccHHHHHHHHHHHHHHHHcC-cceEEEEec-Cc-ccCCccccccc------------
Confidence            466666555431        23578888888888888877653 455555433 23 33343332211            


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHH
Q 015014          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (414)
Q Consensus       148 ~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a  227 (414)
                        ......+.+.++..+++|+|+.|-|.+.|||.--...+|.+.+.++++++.      +.|.+ .+..|-+-......+
T Consensus       174 --~~~~~a~~~~~~~~~~vP~i~vv~g~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg-~AsILwkd~~~a~ea  244 (316)
T d2f9ya1         174 --QSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEG-CASILWKSADKAPLA  244 (316)
T ss_dssp             --HHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHH-HHHHHSSCSTTHHHH
T ss_pred             --HHHHHHHHHHHHHhCCCceEEEEEhhhhchhhhhhhhhhHHHHHhhhHHhh------ccchh-hhhHhhccchhhcch
Confidence              223445677789999999999999999999998888999999999999982      23444 444454433322133


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCC
Q 015014          228 AYLGMTGKRISTPSDALFAGLGTDYVPS  255 (414)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (414)
                      .+    ...++ +++.+++|+||+|+|.
T Consensus       245 Ae----alklt-a~dL~~lgiIDeII~E  267 (316)
T d2f9ya1         245 AE----AMGII-RPRLKELKLIDSIIPE  267 (316)
T ss_dssp             HH----HHTCS-HHHHHTTTSCSCCCCC
T ss_pred             HH----HHhhh-hHHHHHcCchhhcccC
Confidence            33    34688 9999999999999963

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.00  E-value=0.0068  Score=54.70  Aligned_cols=139  Identities=14%  Similarity=0.107  Sum_probs=87.6

Q ss_pred             cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHH
Q 015014           76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY  155 (414)
Q Consensus        76 ~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (414)
                      .|.++..+..-+.-+++....+.+..+.+.+.++. +-.|.|.-+|      |+.+.+-...          .......+
T Consensus        90 ~v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~~-lP~I~l~dsg------Gar~~eg~~~----------~~~~~~~~  152 (258)
T d2a7sa1          90 DVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-RPLIGINDGA------GARIQEGVVS----------LGLYSRIF  152 (258)
T ss_dssp             EEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------SBCGGGCTHH----------HHHHHHHH
T ss_pred             eEEEecccceEeCCccchhhhhHHHHHHHHHHhcC-CceEEEeccC------Cccccccccc----------ccchhhHH
Confidence            35556666555667899999999999998887765 4555554333      3333321110          00111112


Q ss_pred             HHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCC-eeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcC
Q 015014          156 SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTG  234 (414)
Q Consensus       156 ~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~-a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG  234 (414)
                      .. .....-..|+|+++.|+|.|||......||++|+.++ +.+.       +.             |+. .. + ..||
T Consensus       153 ~~-~~~~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~-------~a-------------GP~-vV-~-~~~g  208 (258)
T d2a7sa1         153 RN-NILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMF-------IT-------------GPD-VI-K-TVTG  208 (258)
T ss_dssp             HH-HHHHTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCB-------SS-------------CHH-HH-H-HHHC
T ss_pred             HH-HHHHcCCCCEEEEEecCcccHHHHHHHhccceEeecCceEEE-------cc-------------Chh-HH-H-HhcC
Confidence            22 2233467999999999999999999999999998663 4433       21             211 11 1 2467


Q ss_pred             CCCCcHHHH-------HHcCccceecCCC
Q 015014          235 KRISTPSDA-------LFAGLGTDYVPSG  256 (414)
Q Consensus       235 ~~i~~a~eA-------~~~GLv~~vv~~~  256 (414)
                      +.++ .+|.       .+.|++|.+++++
T Consensus       209 e~~~-~eeLGga~~h~~~sG~~D~v~~de  236 (258)
T d2a7sa1         209 EEVT-MEELGGAHTHMAKSGTAHYAASGE  236 (258)
T ss_dssp             CCCC-HHHHHBHHHHHHTSCCCSEEESSH
T ss_pred             CccC-hhhccCHhHhhhhccccceEeCCH
Confidence            8887 6643       4679999999864

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.003  Score=57.30  Aligned_cols=146  Identities=14%  Similarity=0.158  Sum_probs=87.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |.++-.|--=..-+++..-.+.+..+++.+.+.. +-.|.++-+|      |+.+.+-...          .........
T Consensus        98 v~v~a~Dftv~gGS~g~~~~~Ki~~a~e~A~~~~-lPlI~~~~sg------G~r~~e~~~s----------l~~~~~~~~  160 (263)
T d2f9yb1          98 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDN-CPLICFSASG------GARMQEALMS----------LMQMAKTSA  160 (263)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHHT-CCEEEEEEES------SBCGGGTHHH----------HHHHHHHHH
T ss_pred             EEEEeeeehhhccccccchhhHHhHHHHHHHHcC-CCeEEEecCC------Ccccccccch----------hhcchhHHH
Confidence            5555555444567899899999999998887654 4455555433      3344332110          011122223


Q ss_pred             HHHHHhhCCCcEEEEECCccccchhh-hhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCC
Q 015014          157 LICKISEYKKPYISLMDGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (414)
Q Consensus       157 l~~~l~~~~kPvIAavnG~a~GgG~~-Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~  235 (414)
                      ....+.....|+|+++.|+|.|||.. +++.+|++++.+.+.+++.-.           ..+....|..       +. +
T Consensus       161 ~~~~~~~~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aGP-----------~vve~~~ge~-------~~-e  221 (263)
T d2f9yb1         161 ALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGP-----------RVIEQTVREK-------LP-P  221 (263)
T ss_dssp             HHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCH-----------HHHHHHHTSC-------CC-T
T ss_pred             HHHHHHhCCCceEEEecCCcchHHHhhhhhcCceEeeecceeeeccCH-----------HHHhhhcCCc-------CC-h
Confidence            33455667899999999999998864 778888888888877664211           0111111111       12 2


Q ss_pred             CCCcHHHHHHcCccceecCCCCH
Q 015014          236 RISTPSDALFAGLGTDYVPSGNL  258 (414)
Q Consensus       236 ~i~~a~eA~~~GLv~~vv~~~~l  258 (414)
                      .+.+++-..+.|+||.++++++.
T Consensus       222 ~~g~a~~~~~~G~iD~vv~~ee~  244 (263)
T d2f9yb1         222 GFQRSEFLIEKGAIDMIVRRPEM  244 (263)
T ss_dssp             TTTBHHHHGGGTCCSEECCHHHH
T ss_pred             hhccHHHHHhCCCCCEEECCHHH
Confidence            33336666789999999976543

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.95  E-value=0.014  Score=52.60  Aligned_cols=138  Identities=17%  Similarity=0.140  Sum_probs=88.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |.++..|..=+.-+++....+.+..+++.+.+.. +-.|.|.-+| +     +.+.+-....          ......+.
T Consensus        90 v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~~-lPlI~l~dsg-G-----arm~e~~~~~----------~~~~~~~~  152 (258)
T d1xnya1          90 VAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTG-CPVVGINDSG-G-----ARIQEGVASL----------GAYGEIFR  152 (258)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC-S-----BCGGGTHHHH----------HHHHHHHH
T ss_pred             EEEEechhhhhcCccchhhHHHHHHHHHHHHHcC-CceEEEecCC-C-----cccCcccccc----------cchhHHHH
Confidence            5556666555667899999999999998887754 4566665544 2     3333321110          01111122


Q ss_pred             HHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcC-CeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCC
Q 015014          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE-KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (414)
Q Consensus       157 l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~-~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~  235 (414)
                      .... ..-.+|+|+++.|+|.|||......||++|+.+ .+.+++-                    |+.  ..+ ..+|+
T Consensus       153 ~~~~-~s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~a--------------------GP~--vv~-~~~ge  208 (258)
T d1xnya1         153 RNTH-ASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPD--VIK-TVTGE  208 (258)
T ss_dssp             HHHH-TTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHH--HHH-HHHCC
T ss_pred             HHHH-HcCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEec--------------------CHH--HHH-HHhcC
Confidence            2222 234699999999999999999999999988876 4454421                    111  111 35678


Q ss_pred             CCCcHHHH-------HHcCccceecCCC
Q 015014          236 RISTPSDA-------LFAGLGTDYVPSG  256 (414)
Q Consensus       236 ~i~~a~eA-------~~~GLv~~vv~~~  256 (414)
                      .++ .+|+       ..-|++|.+++++
T Consensus       209 ~i~-~eelgga~~h~~~sG~~d~v~~de  235 (258)
T d1xnya1         209 DVG-FEELGGARTHNSTSGVAHHMAGDE  235 (258)
T ss_dssp             CCC-HHHHHBHHHHHHTSSCCSEEESSH
T ss_pred             ccC-hHHhccHHHHHhcCCeeEEEeCCH
Confidence            887 7764       4579999999754

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.85  E-value=0.011  Score=53.00  Aligned_cols=138  Identities=17%  Similarity=0.134  Sum_probs=85.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (414)
                      |.++..+---..-+++....+.+..+++.+.+.. +-.|.+..+|      |+.+.+-....         . .....+.
T Consensus        88 v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~-~P~I~~~dsg------G~r~~e~~~~l---------~-~~~~~~~  150 (251)
T d1vrga1          88 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGINDSG------GARIQEGVDAL---------A-GYGEIFL  150 (251)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEEEC------SBCGGGTHHHH---------H-HHHHHHH
T ss_pred             EEEeeehhhhhhcccchHHHHHHHHHHHHHHHcC-CCEEEEEcCC------Ccccccccccc---------c-cchHHHH
Confidence            4444444444567888888888988888777654 3455554433      34443321111         0 1111122


Q ss_pred             HHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCC-eeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCC
Q 015014          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (414)
Q Consensus       157 l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~-a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~  235 (414)
                      .. ....-..|+|+++.|+|.||+......||++|+.++ +.+       ++.+        |+       ..+ ..+|+
T Consensus       151 ~~-~~~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i-------~~aG--------p~-------vv~-~~~ge  206 (251)
T d1vrga1         151 RN-TLASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARM-------FITG--------PN-------VIK-AVTGE  206 (251)
T ss_dssp             HH-HHHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBC-------BSSC--------HH-------HHH-HHHCC
T ss_pred             HH-HHHCCCCCEEEEEccCccccceehhhhCceEEEEccceeE-------EecC--------ch-------hhh-hhcCC
Confidence            22 233457999999999999999999999999998764 332       2211        11       112 25678


Q ss_pred             CCCcHHHH-------HHcCccceecCCC
Q 015014          236 RISTPSDA-------LFAGLGTDYVPSG  256 (414)
Q Consensus       236 ~i~~a~eA-------~~~GLv~~vv~~~  256 (414)
                      .++ .+|.       .+.|++|.+++++
T Consensus       207 ~~~-~eelGga~~h~~~sG~~D~v~~de  233 (251)
T d1vrga1         207 EIS-QEDLGGAMVHNQKSGNAHFLADND  233 (251)
T ss_dssp             CCC-HHHHHBHHHHHHTSCCCSEEESSH
T ss_pred             cCC-hHHccchhhhhhccccceEEECCH
Confidence            888 7764       4679999999864

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.50  E-value=0.0072  Score=55.42  Aligned_cols=159  Identities=14%  Similarity=-0.039  Sum_probs=87.7

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHH
Q 015014           80 ITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLI  158 (414)
Q Consensus        80 Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~  158 (414)
                      |.-|.+. +.-+++..-.+.+.++++.+.+.. +-+|.|.-++      |+.+.+-....   .........+.    .+
T Consensus       108 v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~~-lP~I~l~ds~------Ga~~~~~~e~~---~~~~~~g~~~~----~~  173 (287)
T d1pixa2         108 VVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLNCS------GVKFDEQEKVY---PNRRGGGTPFF----RN  173 (287)
T ss_dssp             EEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEECCC------EECGGGHHHHS---SSTTSTTHHHH----HH
T ss_pred             EEEeccccccccchhhHHHHHHHHHHhhhhcC-CCEEEEecCC------cccCCcchhhc---cchhhHHHHHH----HH
Confidence            3334444 446788888888888888777654 4555554332      33333211110   01111111221    22


Q ss_pred             HHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEec--ccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCCC
Q 015014          159 CKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM--PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKR  236 (414)
Q Consensus       159 ~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~--pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~~  236 (414)
                      ..+....+|+|++|-|.|.|||.-.+++||++++.+++.+.+  |.+--+..+..+........+..   ...--.+-+.
T Consensus       174 a~ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~~~~~~~~ei~~---~~ge~~~~ee  250 (287)
T d1pixa2         174 AELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIAD---MVDRTGKTEP  250 (287)
T ss_dssp             HHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHHH---HHHTTCCCCC
T ss_pred             HHHhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhhhhhhhHHHHHh---hhcccccccc
Confidence            346667899999999999999988888888888888887766  33222232222211111111100   0000124455


Q ss_pred             CCcHHHH--HHcCccceecCCC
Q 015014          237 ISTPSDA--LFAGLGTDYVPSG  256 (414)
Q Consensus       237 i~~a~eA--~~~GLv~~vv~~~  256 (414)
                      +. +.+.  ...|++|.+++++
T Consensus       251 LG-Ga~~H~~~sG~~d~v~~~e  271 (287)
T d1pixa2         251 PG-AVDIHYTETGFMREVYASE  271 (287)
T ss_dssp             SS-BHHHHTTTSCCSCEEESSH
T ss_pred             cc-cHHHhhhhcccceeecCCH
Confidence            65 4443  4579999999864

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=96.21  E-value=0.015  Score=52.14  Aligned_cols=138  Identities=12%  Similarity=0.116  Sum_probs=85.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHH
Q 015014           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI-EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY  155 (414)
Q Consensus        77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl-~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (414)
                      |.++-.+--=+.-+++....+.+..+.+.+.+..- -+|.+ .|.|       +.+.+-....         . .....+
T Consensus        91 v~v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~~l-PlV~l~~sgG-------~r~~eg~~~l---------~-~~~~~~  152 (253)
T d1on3a1          91 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTGT-PFLFFYDSGG-------ARIQEGIDSL---------S-GYGKMF  152 (253)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTC-CEEEEEEECS-------BCGGGTHHHH---------H-HHHHHH
T ss_pred             chhhhchhhhhcccceecccchhhhhHHHHhhcCC-CeEEEEecCC-------Ccccccceec---------c-ccceeh
Confidence            55555554446678999999999999988877653 44444 4433       3333211100         0 111111


Q ss_pred             HHHHHHhhCCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCC
Q 015014          156 SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (414)
Q Consensus       156 ~l~~~l~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~  235 (414)
                      .....+.. ..|+|+++.|+|.||+......||++|+.+++.+++--               |+++       + ..||+
T Consensus       153 ~~~~~ls~-~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aG---------------P~vV-------e-~~~ge  208 (253)
T d1on3a1         153 FANVKLSG-VVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITG---------------PQVI-------K-SVTGE  208 (253)
T ss_dssp             HHHHHHTT-TSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSC---------------HHHH-------H-HHHCC
T ss_pred             HHHHHHhc-cceEEEEEecCcccceeeccchhhheeccccceEEecC---------------cchh-------h-hhhCC
Confidence            22223333 59999999999999999999999999999877765421               1111       1 13456


Q ss_pred             CCCcHHH-------HHHcCccceecCCCC
Q 015014          236 RISTPSD-------ALFAGLGTDYVPSGN  257 (414)
Q Consensus       236 ~i~~a~e-------A~~~GLv~~vv~~~~  257 (414)
                      .++ .+|       +.+.|.+|.++++++
T Consensus       209 ~~~-~eelGga~~h~~~sG~iD~v~~~e~  236 (253)
T d1on3a1         209 DVT-ADELGGAEAHMAISGNIHFVAEDDD  236 (253)
T ss_dssp             CCC-HHHHHSHHHHHHTTCCCSEEESSHH
T ss_pred             cCC-hHhccCHHHhhhccccceEEECCHH
Confidence            665 442       345799999998754

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.14  E-value=0.06  Score=48.56  Aligned_cols=161  Identities=12%  Similarity=0.138  Sum_probs=100.4

Q ss_pred             cCc-EEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHH
Q 015014           74 PNG-VAVITLDRPKA-LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVF  151 (414)
Q Consensus        74 ~~~-V~~Itlnrp~~-~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  151 (414)
                      +|. |++|- |+|.. ..+++.+-.....+.++..+.. ++-.|.|.-.  ..|..|-+-..-.              ..
T Consensus        68 ~G~~vgvia-n~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dt--pGf~~G~~~E~~g--------------~~  129 (271)
T d2a7sa2          68 DGRPVGIVA-NQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV--PGFLPGTDQEYNG--------------II  129 (271)
T ss_dssp             SSCEEEEEE-ECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE--CCBCCCHHHHHHC--------------HH
T ss_pred             CCeEEEEEe-ccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeech--hhhhhhccHHHhh--------------HH
Confidence            443 55444 55543 3589999999999999887764 5777777665  3587775543311              33


Q ss_pred             HHHHHHHHHHhhCCCcEEEEECCccccchhhhh----ccCCeEEEcCCeeEecccccCCCCCChhHHHHHhh-CCCcHH-
Q 015014          152 TAEYSLICKISEYKKPYISLMDGVTMGFGIGIS----GHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK-GPGGGS-  225 (414)
Q Consensus       152 ~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~La----la~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r-~~G~~~-  225 (414)
                      +...+++.++..+..|.|+.|=|.+.|||....    +.+|++++.++++++       +.++-|+...+-+ .+.... 
T Consensus       130 ~~ga~~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~ig-------vMgpegaa~v~~~~~l~~~~~  202 (271)
T d2a7sa2         130 RRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIA-------VMGASGAVGFVYRQQLAEAAA  202 (271)
T ss_dssp             HHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTTTTTTGGGT
T ss_pred             HHHHHHHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEe-------ecCHHHHHHHHHHHhhhhhhh
Confidence            445578889999999999999999998764322    246777666666555       4433444433322 221100 


Q ss_pred             --------HHHHH-HhcCCCCCcHHHHHHcCccceecCCCCHHH
Q 015014          226 --------VGAYL-GMTGKRISTPSDALFAGLGTDYVPSGNLGS  260 (414)
Q Consensus       226 --------~a~~l-~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~  260 (414)
                              +...+ -+.-..-+ +-.|...|++|.|+++.+...
T Consensus       203 ~~~~~~~~~~~~~~e~~e~~~~-p~~aa~~g~iD~VIdP~dTR~  245 (271)
T d2a7sa2         203 NGEDIDKLRLRLQQEYEDTLVN-PYVAAERGYVDAVIPPSHTRG  245 (271)
T ss_dssp             SSCCTTSSTTHHHHHHHTTTSB-SHHHHHHTSSSEECCGGGHHH
T ss_pred             cccchHHHHHHHHHHHHHHhcC-HHHHHHcCCCCeeECHHHHHH
Confidence                    00111 11122234 677888999999999877643

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.62  E-value=0.036  Score=49.93  Aligned_cols=157  Identities=13%  Similarity=0.124  Sum_probs=98.0

Q ss_pred             EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHH
Q 015014           77 VAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY  155 (414)
Q Consensus        77 V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (414)
                      |++|. |+|. ...+++.+-.+...+.++.++.. ++-.|.|.-.  ..|-.|-+-..-              ...+...
T Consensus        69 vgvia-n~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dt--pGf~~G~~~E~~--------------g~~~~ga  130 (264)
T d1vrga2          69 VGIVA-NQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT--PGYLPGVAQEHG--------------GIIRHGA  130 (264)
T ss_dssp             EEEEE-ECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE--CCBCCCHHHHHT--------------THHHHHH
T ss_pred             EEEEe-ccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeec--ccccccHHHHHH--------------hHHHHHH
Confidence            55444 5554 34579999999999999887764 4677777654  357777554321              1344556


Q ss_pred             HHHHHHhhCCCcEEEEECCccccchhhhhc-----cCCeEEEcCCeeEecccccCCCCCChhHHHHHhhC-C---CcH-H
Q 015014          156 SLICKISEYKKPYISLMDGVTMGFGIGISG-----HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-P---GGG-S  225 (414)
Q Consensus       156 ~l~~~l~~~~kPvIAavnG~a~GgG~~Lal-----a~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~-~---G~~-~  225 (414)
                      +++.++..+.+|.|+.|=|.+.|||. +++     .+|++++-+++.++       +..+-|+...+-+. +   ... .
T Consensus       131 ~~~~a~a~~~vP~i~viir~~yG~g~-~am~~~~~~~d~~~awP~a~~~-------vm~pe~aa~v~~~~~l~~~~~~~~  202 (264)
T d1vrga2         131 KLLYAYSEATVPKITVILRKAYGGAY-IAMGSKHLGADMVLAWPSAEIA-------VMGPEGAANIIFKREIEASSNPEE  202 (264)
T ss_dssp             HHHHHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHH
T ss_pred             HHHHHHhcCCCCEEEEEeCCcccHHh-hhccCCccCCCeeeeccceeEE-------ecCHHHhhhhhhhhhhhhhhCcHH
Confidence            78889999999999999999999776 333     47777776666655       43333333333211 0   000 0


Q ss_pred             HHHHH--HhcCCCCCcHHHHHHcCccceecCCCCHHH
Q 015014          226 VGAYL--GMTGKRISTPSDALFAGLGTDYVPSGNLGS  260 (414)
Q Consensus       226 ~a~~l--~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~  260 (414)
                      ...++  .+.-+.-+ +-.+...|++|.|+++.+...
T Consensus       203 ~~~~~~~~~~e~~~~-~~~aa~~g~iD~VIdP~dTR~  238 (264)
T d1vrga2         203 TRRKLIEEYKQQFAN-PYIAASRGYVDMVIDPRETRK  238 (264)
T ss_dssp             HHHHHHHHHHHHTSS-HHHHHHTTSSSEECCGGGHHH
T ss_pred             HHHHHHHHHHHHhcC-HHHHHHcCCCCeeECHHHHHH
Confidence            00110  01111124 788889999999999877643

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=95.29  E-value=0.063  Score=48.23  Aligned_cols=158  Identities=13%  Similarity=0.116  Sum_probs=97.4

Q ss_pred             EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHH
Q 015014           77 VAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY  155 (414)
Q Consensus        77 V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (414)
                      |++|- |+|. ...+++.+-.+...+.++..+. -++-.|.|.-.  ..|..|-+-..-              ...+...
T Consensus        69 vgvia-n~~~~~~G~~~~~~a~Kaarfi~lc~~-~~iPlv~l~D~--pGf~~G~~~E~~--------------g~i~~ga  130 (264)
T d1on3a2          69 VGIVA-NQPSVMSGCLDINASDKAAEFVNFCDS-FNIPLVQLVDV--PGFLPGVQQEYG--------------GIIRHGA  130 (264)
T ss_dssp             EEEEE-ECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE--CCBCCCHHHHHT--------------THHHHHH
T ss_pred             EEEEe-ccchhcccccChHHHHHHHHHHHHHHh-cCCceEEEecc--ccccccHHHHHH--------------HHHHHHH
Confidence            55544 5554 4568999999999998887776 45777777654  357777554321              1445556


Q ss_pred             HHHHHHhhCCCcEEEEECCccccchhhhhc----cCCeEEEcCCeeEecccccCCCCCChhHHHHHhhC-C----CcHH-
Q 015014          156 SLICKISEYKKPYISLMDGVTMGFGIGISG----HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-P----GGGS-  225 (414)
Q Consensus       156 ~l~~~l~~~~kPvIAavnG~a~GgG~~Lal----a~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~-~----G~~~-  225 (414)
                      +++.++..+.+|.|+.|=|.+.|+|..-..    ..|++++-+++       .+|..++-|+...+-+. +    .... 
T Consensus       131 ~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A-------~~~vMg~Egaa~v~~~~el~a~~~~~~~  203 (264)
T d1on3a2         131 KMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSA-------EIAVMGAEGAANVIFRKEIKAADDPDAM  203 (264)
T ss_dssp             HHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTC-------EEESSCHHHHHHHHTHHHHHHSSCHHHH
T ss_pred             HHHHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHhh-------HhhhccHHHHHHHHHhhhhhhhhhhhhh
Confidence            788899999999999999999997754433    24555555544       55555444544443221 0    0000 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCCHH
Q 015014          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG  259 (414)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (414)
                      +...+-..-+.+.++-.|...|.+|.|+++.+..
T Consensus       204 ~~~~~~e~~~~~~~p~~aA~~g~iD~VIdP~eTR  237 (264)
T d1on3a2         204 RAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTR  237 (264)
T ss_dssp             HHHHHHHHHHHHSSHHHHHHTTSSSEECCGGGHH
T ss_pred             hHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHH
Confidence            0111111111112267788899999999987754

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.29  E-value=0.17  Score=47.64  Aligned_cols=110  Identities=15%  Similarity=0.217  Sum_probs=68.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcE
Q 015014           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (414)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPv  168 (414)
                      -.+.++-...-.+.+..+++..++-.|+|.-.  ..|+.|-+-..              ....+....++.++..+.+|+
T Consensus       108 gv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~--pGF~~G~~~E~--------------~gilr~GA~iv~A~~~~~vP~  171 (404)
T d1uyra2         108 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW--RGFSGGQRDMF--------------NEVLKYGSFIVDALVDYKQPI  171 (404)
T ss_dssp             TCBCHHHHHHHHHHHHHHHTTSCCCEEECCCC--CCBCC--------------------CTHHHHHHHHHHHHHTCCSCE
T ss_pred             CccCchHHHHHHHHHHHhhhccccceEEeecC--CcccCcHHHHH--------------HHHHHHHHHHHHHHHhcCCCE
Confidence            35677888888888888877667788888654  57988855321              113445557888999999999


Q ss_pred             EEEE--CCccccchhhhhccCCeEEEcC-CeeEecccccCCCCCChhHHHHH
Q 015014          169 ISLM--DGVTMGFGIGISGHGRYRIVTE-KTLLAMPENGIGLFPDVGFSYIA  217 (414)
Q Consensus       169 IAav--nG~a~GgG~~Lala~D~ria~~-~a~f~~pe~~~Gl~P~~g~~~~L  217 (414)
                      |..|  .|.+.||....+ .+  .+-.+ -..|+.|..++|..++-|+.-.+
T Consensus       172 i~vI~~~g~~~GGa~vv~-~~--~~~~~~~~~yAwP~a~~gVm~pEGav~I~  220 (404)
T d1uyra2         172 IIYIPPTGELRGGSWVVV-DP--TINADQMEMYADVNARAGVLEPQGMVGIK  220 (404)
T ss_dssp             EEEECTTCEEEHHHHHTT-CG--GGGTTTEEEEEETTCEEESSCHHHHHHHH
T ss_pred             EEEEeCCcccchhhhhcc-cC--ccCCccceEEECCccccccCChhhhhhhe
Confidence            9999  677766554433 21  11111 12455666666776666665443

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=93.48  E-value=1  Score=40.68  Aligned_cols=151  Identities=14%  Similarity=0.106  Sum_probs=91.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHHHHHHHHhhCCCcE
Q 015014           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (414)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPv  168 (414)
                      -+|+.+-.....+.++.++.. ++-+|.|.-.  ..|-.|-+-..              ....+...+++.++..+.+|.
T Consensus        97 G~l~~~~a~K~~rfi~lc~~~-~iPlv~l~D~--pGf~~g~~~E~--------------~g~~r~ga~~~~a~~~~~VP~  159 (299)
T d1pixa3          97 GKLYRQGLVKMNEFVTLCARD-RLPIVWIQDT--TGIDVGNDAEK--------------AELLGLGQSLIYSIQTSHIPQ  159 (299)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC--CEECCSHHHHH--------------TTHHHHHHHHHHHHHTCCCCE
T ss_pred             CccCHHHHHHHHHHHHHHHHc-CCeEEEEEeC--CCcccchHHHh--------------hhHHHHHHHHHHHHHhhccee
Confidence            568899999999999888775 4667777543  34777744321              013445557888999999999


Q ss_pred             EEEECCccccchhhhhccCCeEEEcCCeeE--ecccccCCCCCChhHHHHHh-hCC------CcH--H---HHHHHHhc-
Q 015014          169 ISLMDGVTMGFGIGISGHGRYRIVTEKTLL--AMPENGIGLFPDVGFSYIAA-KGP------GGG--S---VGAYLGMT-  233 (414)
Q Consensus       169 IAavnG~a~GgG~~Lala~D~ria~~~a~f--~~pe~~~Gl~P~~g~~~~L~-r~~------G~~--~---~a~~l~lt-  233 (414)
                      |+.|=|.+.|||........   ...+..|  ..|...+|..++-++...+- +.+      +..  .   .-.+++-. 
T Consensus       160 isvi~r~~~G~a~~am~g~~---~~~~~~~~~awP~aeigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~~  236 (299)
T d1pixa3         160 FEITLRKGTAAAHYVLGGPQ---GNDTNAFSIGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAF  236 (299)
T ss_dssp             EEEECSEEETTHHHHTTCTT---CTTTEEEEEECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             EEEEecccccccccccccCc---cCcccceecCCCccccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            99999999998754322221   1222233  33555566665555444432 211      100  0   00111100 


Q ss_pred             CCCCCcHHHHHHcCccceecCCCCHHH
Q 015014          234 GKRISTPSDALFAGLGTDYVPSGNLGS  260 (414)
Q Consensus       234 G~~i~~a~eA~~~GLv~~vv~~~~l~~  260 (414)
                      -+..+ +-.|...|++|.|+++.+...
T Consensus       237 ~~~~s-p~~aAs~~~iD~IIDP~dTR~  262 (299)
T d1pixa3         237 YTKSR-PKVCAELGLVDEIVDMNKIRG  262 (299)
T ss_dssp             HHTTS-HHHHHHHTSSSEECCTTTHHH
T ss_pred             HHhcC-HHHHHHhCCcCeeECHHHHHH
Confidence            02245 778888999999999988654

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=92.07  E-value=0.56  Score=41.64  Aligned_cols=157  Identities=15%  Similarity=0.194  Sum_probs=96.7

Q ss_pred             EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccCCCChhhHHHHhhhCCCCCchHHHHHHHH
Q 015014           77 VAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY  155 (414)
Q Consensus        77 V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (414)
                      |++|. |+|. ...+++.+-.....+.++..+.. ++-.|.|.-.  ..|-.|.+-.+-              ...+...
T Consensus        67 vgvia-~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~--pGf~~G~~~E~~--------------g~~~~ga  128 (263)
T d1xnya2          67 VGIVA-NQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDV--PGFLPGVDQEHD--------------GIIRRGA  128 (263)
T ss_dssp             EEEEE-ECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE--CCBCCCHHHHHT--------------THHHHHH
T ss_pred             EEEEe-cccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeecc--cccccchhHHHH--------------hHHHHHH
Confidence            55554 5554 34589999999999998887764 4677777654  247777554321              1344556


Q ss_pred             HHHHHHhhCCCcEEEEECCccccchhhhhc----cCCeEEEcCCeeEecccccCCCCCChhHHHHHhhC-C----CcH-H
Q 015014          156 SLICKISEYKKPYISLMDGVTMGFGIGISG----HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-P----GGG-S  225 (414)
Q Consensus       156 ~l~~~l~~~~kPvIAavnG~a~GgG~~Lal----a~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~-~----G~~-~  225 (414)
                      +++.++..+..|.|+.|=|.+.|||.....    ..|+++|.+++.++       +.++-|+...+-+. +    ... .
T Consensus       129 ~~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~g-------vm~pe~aa~il~~~~~~~a~~~~~~  201 (263)
T d1xnya2         129 KLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIA-------VMGAQGAVNILHRRTIADAGDDAEA  201 (263)
T ss_dssp             HHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHSCCTTCSS
T ss_pred             HHHHHHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhh-------ccCHHHHHHHHHHHHHhhhccchHH
Confidence            788899999999999999999997764432    35777776666665       44334444333211 0    000 0


Q ss_pred             HHHHHH--hcCCCCCcHHHHHHcCccceecCCCCHH
Q 015014          226 VGAYLG--MTGKRISTPSDALFAGLGTDYVPSGNLG  259 (414)
Q Consensus       226 ~a~~l~--ltG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (414)
                      ...++.  ..-...+ +..+...|.+|.|+++.+..
T Consensus       202 ~~~~~~~~~~~~~~~-p~~aA~~g~iD~VIdP~dTR  236 (263)
T d1xnya2         202 TRARLIQEYEDALLN-PYTAAERGYVDAVIMPSDTR  236 (263)
T ss_dssp             SHHHHHHHHHHHHSS-SHHHHHHTSSSEECCGGGHH
T ss_pred             HHHHHHHHHHHHhcC-HHHHHHcccCCcccCHHHHH
Confidence            001110  0001123 56678889999999988764

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.03  E-value=0.037  Score=51.29  Aligned_cols=77  Identities=14%  Similarity=0.052  Sum_probs=50.6

Q ss_pred             CCCcEEEEECCccccchhhhhccCCeEEEcCCeeEecccccCCCCCChhHHHHHhhCCCcHHHHHHHHhcCCCCCcHHHH
Q 015014          164 YKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDA  243 (414)
Q Consensus       164 ~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~Gl~P~~g~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA  243 (414)
                      -..|+|++|.|.|+|+|.-++..||++|+.+++.+.+.           |...+.+..|.. .    -.+-+.+.|++=.
T Consensus       239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~lt-----------Gp~~l~~~lG~e-V----y~s~~eLGG~~i~  302 (333)
T d1uyra1         239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT-----------GAPAINKMLGRE-V----YTSNLQLGGTQIM  302 (333)
T ss_dssp             HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESS-----------CHHHHHHHSSSC-C----CSCTHHHHSHHHH
T ss_pred             CCCCEEEEEeCCccccceeecccccEEEEeCCceEEee-----------CHHHHHHhcCcc-c----cCChhHhCCHhHH
Confidence            46999999999999999999999999999998776532           111233333321 0    0011111223333


Q ss_pred             HHcCccceecCCC
Q 015014          244 LFAGLGTDYVPSG  256 (414)
Q Consensus       244 ~~~GLv~~vv~~~  256 (414)
                      .+-|+++.++++|
T Consensus       303 ~~nGv~h~~a~dd  315 (333)
T d1uyra1         303 YNNGVSHLTAVDD  315 (333)
T ss_dssp             HHHTSSSEEESSH
T ss_pred             hhCCCceEEeCCH
Confidence            4689999999864