Citrus Sinensis ID: 015068
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 413 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FRL3 | 487 | Sugar transporter ERD6-li | yes | no | 0.997 | 0.845 | 0.782 | 0.0 | |
| Q93YP9 | 488 | Sugar transporter ERD6-li | no | no | 0.997 | 0.844 | 0.783 | 0.0 | |
| P93051 | 463 | Sugar transporter ERD6-li | no | no | 0.920 | 0.820 | 0.420 | 9e-85 | |
| Q8LBI9 | 482 | Sugar transporter ERD6-li | no | no | 0.941 | 0.807 | 0.410 | 3e-84 | |
| Q3ECP7 | 470 | Sugar transporter ERD6-li | no | no | 0.842 | 0.740 | 0.459 | 6e-84 | |
| Q0WQ63 | 470 | Sugar transporter ERD6-li | no | no | 0.946 | 0.831 | 0.396 | 4e-78 | |
| O04036 | 496 | Sugar transporter ERD6 OS | no | no | 0.980 | 0.816 | 0.380 | 2e-77 | |
| Q94CI7 | 474 | Sugar transporter ERD6-li | no | no | 0.886 | 0.772 | 0.4 | 5e-74 | |
| Q8VZT3 | 462 | Sugar transporter ERD6-li | no | no | 0.874 | 0.781 | 0.420 | 6e-73 | |
| Q94KE0 | 470 | Sugar transporter ERD6-li | no | no | 0.874 | 0.768 | 0.415 | 6e-73 |
| >sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/414 (78%), Positives = 376/414 (90%), Gaps = 2/414 (0%)
Query: 1 MSFRDDNEEAAN-LRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDDNEEA N LR+PF+HTGSWY+MGSRQSS+M SS Q++RD S+SV+ CVL+VALGP
Sbjct: 1 MSFRDDNEEARNDLRRPFIHTGSWYRMGSRQSSMMGSS-QVIRDSSISVLACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQNMRG LGSVN
Sbjct: 120 IAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLFFIPESPRWLAKMGMT++FE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGF+TDI++EVNEIKRSVASS++R +RF +LKR+RY+FPLM+GIGLLVLQQL GI
Sbjct: 240 LQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFPLMVGIGLLVLQQLGGI 299
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359
NGVLFYSS IF +AG++SSN ATFG+G +QVVAT ++TWL+DKAGRRLLL ISS GM S
Sbjct: 300 NGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKAGRRLLLTISSVGMTIS 359
Query: 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
+V+ AF+L+ FVS DS YS L ILS+VG+V +V+ FSLG+G IPW+IMSE+
Sbjct: 360 LVIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLGMGPIPWLIMSEI 413
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93YP9|ERDL4_ARATH Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 380/415 (91%), Gaps = 3/415 (0%)
Query: 1 MSFRDDNEEAA--NLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALG 58
MSFRDDN E +LR+PFLHTGSWY+MGSRQSS++ SS Q++RD S+SV+ CVL+VALG
Sbjct: 1 MSFRDDNTEEGRNDLRRPFLHTGSWYRMGSRQSSMLESS-QVIRDSSISVLACVLIVALG 59
Query: 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL 118
PIQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEY+GRKGSL
Sbjct: 60 PIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYVGRKGSL 119
Query: 119 MIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 178
MIAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQ MRG+LGSV
Sbjct: 120 MIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQTMRGALGSV 179
Query: 179 NQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFES 238
NQLSVTIGIMLAYLLGLFV WR+LAVLGVLPCTLLIPGLFFIPESPRWLAKMG+T+DFE+
Sbjct: 180 NQLSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLFFIPESPRWLAKMGLTDDFET 239
Query: 239 SLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298
SLQVLRGF+TDI++EVNEIKRSVASSS+R+A+RF +LKR+RY+FPLM+GIGLL LQQL G
Sbjct: 240 SLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYFPLMVGIGLLALQQLGG 299
Query: 299 INGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAA 358
INGVLFYSS IF +AG++SSNVATFG+GVVQVVATG+ TWL+DKAGRRLLL+ISS GM
Sbjct: 300 INGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDKAGRRLLLMISSIGMTI 359
Query: 359 SFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
S +V+VAF+L+ FVS DS Y+IL ++S+VG+V +VIS SLG+G IPW+IMSE+
Sbjct: 360 SLVIVAVAFYLKEFVSPDSNMYNILSMVSVVGVVAMVISCSLGMGPIPWLIMSEI 414
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 314 bits (804), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 162/385 (42%), Positives = 247/385 (64%), Gaps = 5/385 (1%)
Query: 29 RQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFS 88
R+ + + A D V V G FG GYSSP QA I +DL LTI+EFS
Sbjct: 9 REPLVDKNMAGSKPDQPWMVYLSTFVAVCGSFAFGSCAGYSSPAQAAIRNDLSLTIAEFS 68
Query: 89 IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148
+FGSL GAM+GAI SG IA+ +GRKG++ +++ ++GWL I F+K L +GRL
Sbjct: 69 LFGSLLTFGAMIGAITSGPIADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLAT 128
Query: 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVL 208
G+G+G SY VP++IAEIAP+ RG+L ++NQ+ + G+ +++++G V WRVLA++G++
Sbjct: 129 GYGMGAFSYVVPIFIAEIAPKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGII 188
Query: 209 PCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRT 268
PC GLFFIPESPRWLAK+G +FE++L+ LRG DIS E EI+ + + R
Sbjct: 189 PCAASFLGLFFIPESPRWLAKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLP 248
Query: 269 AIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVV 328
+ +L ++RY ++I GL+V QQ GING+ FY+S+IF AG + + V+
Sbjct: 249 KAKMLDLFQRRYIRSVLIAFGLMVFQQFGGINGICFYTSSIFEQAGF-PTRLGMIIYAVL 307
Query: 329 QVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSL 388
QVV T +N ++D+AGR+ LLL+S++G+ + +V+F+L+ + + +L++
Sbjct: 308 QVVITALNAPIVDRAGRKPLLLVSATGLVIGCLIAAVSFYLK----VHDMAHEAVPVLAV 363
Query: 389 VGLVTVVISFSLGVGAIPWVIMSEV 413
VG++ + SFS G+GA+PWV+MSE+
Sbjct: 364 VGIMVYIGSFSAGMGAMPWVVMSEI 388
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 312 bits (799), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 167/407 (41%), Positives = 253/407 (62%), Gaps = 18/407 (4%)
Query: 8 EEAANLRKPFL-HTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFGFTC 66
+ +L KPFL H + + +S +M V+F V G +FG
Sbjct: 16 NKVEDLGKPFLTHEDDEKESENNESYLM-------------VLFSTFVAVCGSFEFGSCV 62
Query: 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126
GYS+PTQ+ I DL L+++EFS+FGS+ +GAM+GA+ SG+I+++ GRKG++ +A I
Sbjct: 63 GYSAPTQSSIRQDLNLSLAEFSMFGSILTIGAMLGAVMSGKISDFSGRKGAMRTSACFCI 122
Query: 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186
GWL + F+K + L +GR G+G+GV SY VPVYIAEI+P+N+RG L ++NQL + IG
Sbjct: 123 TGWLAVFFTKGALLLDVGRFFTGYGIGVFSYVVPVYIAEISPKNLRGGLTTLNQLMIVIG 182
Query: 187 IMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGF 246
+++L+G ++W+ LA+ G+ PC +L+ GL FIPESPRWLAK G ++F +LQ LRG
Sbjct: 183 SSVSFLIGSLISWKTLALTGLAPCIVLLFGLCFIPESPRWLAKAGHEKEFRVALQKLRGK 242
Query: 247 DTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYS 306
D DI+ E + I+ S+ + R +L K+Y ++IG+ L+V QQ GING+ FY+
Sbjct: 243 DADITNEADGIQVSIQALEILPKARIQDLVSKKYGRSVIIGVSLMVFQQFVGINGIGFYA 302
Query: 307 SNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366
S F AG +S + T + VQV T + T L+DK+GRR L++IS+ G+ L +
Sbjct: 303 SETFVKAGFTSGKLGTIAIACVQVPITVLGTILIDKSGRRPLIMISAGGIFLGCILTGTS 362
Query: 367 FFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
F L+G S + L++ G++ V +FS+G+G +PWVIMSE+
Sbjct: 363 FLLKG----QSLLLEWVPSLAVGGVLIYVAAFSIGMGPVPWVIMSEI 405
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 311 bits (797), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 165/359 (45%), Positives = 243/359 (67%), Gaps = 11/359 (3%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GYSSP Q+++ +L L+++E+S+FGS+ +GAM+GA SG+IA+ IGR+ +
Sbjct: 42 GSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGRIADMIGRRAT 101
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ + + I+GWL I SK + +L +GR L G+G+GV S+ VPVYIAEI P+ +RG +
Sbjct: 102 MGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGFTT 161
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
V+QL + +G+ + YLLG F+ WR+LA++G++PC + + GLF IPESPRWLAK+G E+FE
Sbjct: 162 VHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWLAKVGKWEEFE 221
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG DIS E NEIK + + +L + +Y L++G+GL+VLQQ
Sbjct: 222 IALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVGVGLMVLQQFG 281
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMA 357
G+NG+ FY+S+IF +AG+ SS + + VVQ+ T + LMDK+GRR LLLIS++G
Sbjct: 282 GVNGIAFYASSIFESAGV-SSKIGMIAMVVVQIPMTTLGVLLMDKSGRRPLLLISATGTC 340
Query: 358 ASFFLVSVAFFLEGFVSE---DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
FLV ++F L+ FV + D+ + ++ G+L G SFSLG+G IPWVIMSE+
Sbjct: 341 IGCFLVGLSFSLQ-FVKQLSGDASYLALTGVLVYTG------SFSLGMGGIPWVIMSEI 392
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WQ63|ERDL8_ARATH Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 163/411 (39%), Positives = 251/411 (61%), Gaps = 20/411 (4%)
Query: 4 RDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFG 63
+DD E+ + +P L + + + + + S V ++ G +FG
Sbjct: 5 KDDMEKRNDKSEPLL--------------LPENGSDVSEEASWMVYLSTIIAVCGSYEFG 50
Query: 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123
GYS+PTQ I+ +L L+ S+FS+FGS+ N+GA++GAI SG+I+++IGRKG++ +++V
Sbjct: 51 TCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMGAVLGAITSGKISDFIGRKGAMRLSSV 110
Query: 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSV 183
+ IGWLII +K L GR L G+G G +S+ VPV+IAEI+P+ +RG+L ++NQL +
Sbjct: 111 ISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAEISPRKLRGALATLNQLFI 170
Query: 184 TIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVL 243
IG+ +L+G VNWR LA+ GV PC +L G +FIPESPRWL +G DFE +LQ L
Sbjct: 171 VIGLASMFLIGAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWLEMVGRHSDFEIALQKL 230
Query: 244 RGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVL 303
RG +I+ E EI+ +AS + +L K+ +++G+GL+ QQ GINGV+
Sbjct: 231 RGPQANITREAGEIQEYLASLAHLPKATLMDLIDKKNIRFVIVGVGLMFFQQFVGINGVI 290
Query: 304 FYSSNIFANAGISSSNVATFGLGVVQVVATGVN-TWLMDKAGRRLLLLISSSGMAASFFL 362
FY+ IF +AG +S + + + QVV T + T L+D+ GRR LL+ S+ GM L
Sbjct: 291 FYAQQIFVSAG-ASPTLGSILYSIEQVVLTALGATLLIDRLGRRPLLMASAVGMLIGCLL 349
Query: 363 VSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
+ +F L+ I+ L++ G++ + SFS+G+GAIPWVIMSE+
Sbjct: 350 IGNSFLLKA----HGLALDIIPALAVSGVLVYIGSFSIGMGAIPWVIMSEI 396
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 290 bits (741), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 160/421 (38%), Positives = 251/421 (59%), Gaps = 16/421 (3%)
Query: 4 RDDNEEAANLRK-------PFLHTGSWYKMGSRQSSIMSSSAQMLRDG----SVSVVFCV 52
R + E LRK F + ++ + G + S DG + SV
Sbjct: 3 RQKSMEKGLLRKSLSIRERKFPNEDAFLESGLSRKSPREVKKPQNDDGECRVTASVFLST 62
Query: 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI 112
V G G G+SS QA I DL L+++E+S+FGS+ +G ++GA+ SG++A+ +
Sbjct: 63 FVAVSGSFCTGCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGKVADVL 122
Query: 113 GRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR 172
GRK +++ I GWL ++ ++++ +L GRLL G GVG+ SY +PVYIAEIAP+++R
Sbjct: 123 GRKRTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVR 182
Query: 173 GSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGM 232
GS NQL GI L +++G F+ WR+L V+G++PC + LFFIPESPRWLAK+G
Sbjct: 183 GSFVFANQLMQNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWLAKLGR 242
Query: 233 TEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLV 292
++ SSLQ LRG D DIS E N I+ ++ + + +EL ++RY +PL+IG+GL+
Sbjct: 243 DKECRSSLQRLRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPLIIGVGLMF 302
Query: 293 LQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLIS 352
LQQL G +GV +Y+S++F G S+ + T + + V + T L+DK GRR LL+ S
Sbjct: 303 LQQLCGSSGVTYYASSLFNKGGFPSA-IGTSVIATIMVPKAMLATVLVDKMGRRTLLMAS 361
Query: 353 SSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
S M S L+SV++ + F + I + +G++ ++SF++G+G +PW+IM+E
Sbjct: 362 CSAMGLSALLLSVSYGFQSF----GILPELTPIFTCIGVLGHIVSFAMGMGGLPWIIMAE 417
Query: 413 V 413
+
Sbjct: 418 I 418
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94CI7|EDL17_ARATH Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 278 bits (711), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 150/375 (40%), Positives = 230/375 (61%), Gaps = 9/375 (2%)
Query: 43 DGSVSVVFCVL----VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGA 98
D + CV+ V G FG GY+S + ++ DL L+I++FS FGS A +GA
Sbjct: 22 DSECRITACVILSTFVAVCGSFSFGVATGYTSGAETGVMKDLDLSIAQFSAFGSFATLGA 81
Query: 99 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 158
+GA+ G +A IGR+G++ ++ I GWL I+F+K+ L GR++ G G G+ SY
Sbjct: 82 AIGALFCGNLAMVIGRRGTMWVSDFLCITGWLSIAFAKEVVLLNFGRIISGIGFGLTSYV 141
Query: 159 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 218
VPVYIAEI P+++RG+ NQL G+ + Y G F+ WR LA+LG LPC + + GLF
Sbjct: 142 VPVYIAEITPKHVRGTFTFSNQLLQNAGLAMIYFCGNFITWRTLALLGALPCFIQVIGLF 201
Query: 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 278
F+PESPRWLAK+G ++ E+SL LRG D DIS E +EI+ + F++L ++
Sbjct: 202 FVPESPRWLAKVGSDKELENSLFRLRGRDADISREASEIQVMTKMVENDSKSSFSDLFQR 261
Query: 279 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 338
+Y + L++GIGL+++QQ SG V+ Y+S IF AG S + + T LG+ + +
Sbjct: 262 KYRYTLVVGIGLMLIQQFSGSAAVISYASTIFRKAGFSVA-IGTTMLGIFVIPKAMIGLI 320
Query: 339 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 398
L+DK GRR LL+ S+ GM+ + L+ VAF L+ + + ILS + ++ + ++
Sbjct: 321 LVDKWGRRPLLMTSAFGMSMTCMLLGVAFTLQ----KMQLLSELTPILSFICVMMYIATY 376
Query: 399 SLGVGAIPWVIMSEV 413
++G+G +PWVIMSE+
Sbjct: 377 AIGLGGLPWVIMSEI 391
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZT3|EDL12_ARATH Sugar transporter ERD6-like 12 OS=Arabidopsis thaliana GN=SUGTL5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 275 bits (702), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 154/366 (42%), Positives = 223/366 (60%), Gaps = 5/366 (1%)
Query: 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQ 107
++F ++ FG GY++ T + I+SDL L++++FS+FGSL+ G M+GAI S +
Sbjct: 26 LIFSTFIIVSASFTFGAAIGYTADTMSSIMSDLDLSLAQFSLFGSLSTFGGMIGAIFSAK 85
Query: 108 IAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167
A G K +L +A + I GWL IS +KD +L MGR L G GVG+ISY VPVYIAEI
Sbjct: 86 AASAFGHKMTLWVADLFCITGWLAISLAKDIIWLDMGRFLVGIGVGLISYVVPVYIAEIT 145
Query: 168 PQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 227
P+++RG+ NQL G+ + Y G F++WR LA++G +PC + + GLFFIPESPRWL
Sbjct: 146 PKHVRGAFTFSNQLLQNCGVAVVYYFGNFLSWRTLAIIGSIPCWIQVIGLFFIPESPRWL 205
Query: 228 AKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287
AK G ++ E LQ LRG DI E EIK SV +S + + I L KRY L IG
Sbjct: 206 AKKGRDKECEEVLQKLRGRKYDIVPEACEIKISVEASKKNSNINIRSLFEKRYAHQLTIG 265
Query: 288 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRL 347
IGL++LQQL G G+ Y S +F AG + + L ++ V + + L+D+ GRR
Sbjct: 266 IGLMLLQQLCGTAGISSYGSTLFKLAGF-PARIGMMVLSLIVVPKSLMGLILVDRWGRRP 324
Query: 348 LLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPW 407
LL+ S+ G+ S ++VAF V + I I +G+++ + F++G+GA+PW
Sbjct: 325 LLMTSALGLCLSCITLAVAF----GVKDVPGIGKITPIFCFIGILSFTMMFAIGMGALPW 380
Query: 408 VIMSEV 413
+IMSE+
Sbjct: 381 IIMSEI 386
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 275 bits (702), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 152/366 (41%), Positives = 233/366 (63%), Gaps = 5/366 (1%)
Query: 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQ 107
V+F V G FG GYSS Q II+DL L+++++S+FGS+ G M+GAI SG+
Sbjct: 32 VLFSTFVSVCGSFCFGCAAGYSSVAQTGIINDLGLSVAQYSMFGSIMTFGGMIGAIFSGK 91
Query: 108 IAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167
+A+ +GRKG++ A + I GW+ ++ +KDS +L +GRL GF VG++SY +PVYIAEI
Sbjct: 92 VADLMGRKGTMWFAQIFCIFGWVAVALAKDSMWLDIGRLSTGFAVGLLSYVIPVYIAEIT 151
Query: 168 PQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 227
P+++RG+ NQL + G+ L Y++G FV+WR LA++G++PC L + LFFIPESPR L
Sbjct: 152 PKHVRGAFVFANQLMQSCGLSLFYVIGNFVHWRNLALIGLIPCALQVVTLFFIPESPRLL 211
Query: 228 AKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287
K G ++ +SLQ LRG D DIS E N IK ++ R +L ++RY ++IG
Sbjct: 212 GKWGHEKECRASLQSLRGDDADISEEANTIKETMILFDEGPKSRVMDLFQRRYAPSVVIG 271
Query: 288 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRL 347
+GL++LQQLSG +G+++Y ++F G SS + + L V+ + + L++K GRR
Sbjct: 272 VGLMLLQQLSGSSGLMYYVGSVFDKGGFPSS-IGSMILAVIMIPKALLGLILVEKMGRRP 330
Query: 348 LLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPW 407
LLL S+ GM L+S +F + D + I + +G+V + SF++G+G +PW
Sbjct: 331 LLLASTGGMCFFSLLLSFSFCFRSYGMLD----ELTPIFTCIGVVGFISSFAVGMGGLPW 386
Query: 408 VIMSEV 413
+IMSE+
Sbjct: 387 IIMSEI 392
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 413 | ||||||
| 147792214 | 486 | hypothetical protein VITISV_009034 [Viti | 0.997 | 0.847 | 0.832 | 0.0 | |
| 225430744 | 486 | PREDICTED: sugar transporter ERD6-like 6 | 0.997 | 0.847 | 0.832 | 0.0 | |
| 356559394 | 484 | PREDICTED: sugar transporter ERD6-like 6 | 0.990 | 0.845 | 0.804 | 0.0 | |
| 224065573 | 487 | predicted protein [Populus trichocarpa] | 0.997 | 0.845 | 0.809 | 0.0 | |
| 255538660 | 487 | sugar transporter, putative [Ricinus com | 0.997 | 0.845 | 0.797 | 0.0 | |
| 357518263 | 486 | Sugar transporter ERD6-like protein [Med | 0.997 | 0.847 | 0.784 | 0.0 | |
| 356503024 | 487 | PREDICTED: sugar transporter ERD6-like 6 | 1.0 | 0.848 | 0.799 | 0.0 | |
| 224097006 | 488 | predicted protein [Populus trichocarpa] | 1.0 | 0.846 | 0.806 | 0.0 | |
| 449460263 | 486 | PREDICTED: sugar transporter ERD6-like 6 | 0.997 | 0.847 | 0.784 | 0.0 | |
| 255561092 | 486 | sugar transporter, putative [Ricinus com | 0.987 | 0.839 | 0.802 | 0.0 |
| >gi|147792214|emb|CAN72983.1| hypothetical protein VITISV_009034 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/413 (83%), Positives = 390/413 (94%), Gaps = 1/413 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR++ E+ +LRKPFLHTGSWY+MGSRQSSIM SSAQ++RD SVSV+ CVL+VALGPI
Sbjct: 1 MSFREE-EDGRDLRKPFLHTGSWYRMGSRQSSIMGSSAQIIRDNSVSVLLCVLIVALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ+EIISDL L++SEFSIFGSL+NVGAMVGAIASGQIAEYIGRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQSEIISDLGLSLSEFSIFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
A++PNIIGWL ISF++DSSFL+MGRLLEGFGVGVISYTVPVYIAEI+PQNMRG LGSVNQ
Sbjct: 120 ASIPNIIGWLAISFAQDSSFLYMGRLLEGFGVGVISYTVPVYIAEISPQNMRGGLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVT+GI+LAY+LGLFVNWRVLAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTEDFE+SL
Sbjct: 180 LSVTLGILLAYVLGLFVNWRVLAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFEASL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV EIKRSVAS+ +RT I+F++LKRKRYWFPLM+GIGLL+LQQLSGIN
Sbjct: 240 QVLRGFDTDISVEVTEIKRSVASTGKRTTIQFSDLKRKRYWFPLMVGIGLLMLQQLSGIN 299
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
GVLFYSSNIF AGISSS++AT GLGV+QV+ATGV TWL+DKAGRRLLL++SSSGM S
Sbjct: 300 GVLFYSSNIFEAAGISSSDIATVGLGVIQVIATGVTTWLVDKAGRRLLLIVSSSGMTLSL 359
Query: 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
LVSVAF+L+ +SEDSRFYSILGILSLVGLV +VI+FSLGVGAIPWVIMSE+
Sbjct: 360 LLVSVAFYLKDVISEDSRFYSILGILSLVGLVALVITFSLGVGAIPWVIMSEI 412
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430744|ref|XP_002266704.1| PREDICTED: sugar transporter ERD6-like 6 [Vitis vinifera] gi|297735148|emb|CBI17510.3| unnamed protein product [Vitis vinifera] gi|310877886|gb|ADP37174.1| putative ERD6-like transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/413 (83%), Positives = 390/413 (94%), Gaps = 1/413 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR++ E+ +LRKPFLHTGSWY+MGSRQSSIM SSAQ++RD SVSV+ CVL+VALGPI
Sbjct: 1 MSFREE-EDGRDLRKPFLHTGSWYRMGSRQSSIMGSSAQIIRDNSVSVLLCVLIVALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ+EIISDL L++SEFSIFGSL+NVGAMVGAIASGQIAEYIGRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQSEIISDLGLSLSEFSIFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
A++PNIIGWL ISF++DSSFL+MGRLLEGFGVGVISYTVPVYIAEI+PQNMRG LGSVNQ
Sbjct: 120 ASIPNIIGWLAISFAQDSSFLYMGRLLEGFGVGVISYTVPVYIAEISPQNMRGGLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVT+GI+LAY+LGLFVNWRVLAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTEDFE+SL
Sbjct: 180 LSVTLGILLAYVLGLFVNWRVLAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFEASL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV EIKRSVAS+ +RT I+F++LKRKRYWFPLM+GIGLL+LQQLSGIN
Sbjct: 240 QVLRGFDTDISVEVTEIKRSVASTGKRTTIQFSDLKRKRYWFPLMVGIGLLMLQQLSGIN 299
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
GVLFYSSNIF AGISSS++AT GLGV+QV+ATGV TWL+DKAGRRLLL++SSSGM S
Sbjct: 300 GVLFYSSNIFEAAGISSSDIATVGLGVIQVIATGVTTWLVDKAGRRLLLIVSSSGMTLSL 359
Query: 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
LVSVAF+L+ +SEDSRFYSILGILSLVGLV +VI+FSLGVGAIPWVIMSE+
Sbjct: 360 LLVSVAFYLKDVISEDSRFYSILGILSLVGLVALVITFSLGVGAIPWVIMSEI 412
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559394|ref|XP_003547984.1| PREDICTED: sugar transporter ERD6-like 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/409 (80%), Positives = 378/409 (92%)
Query: 5 DDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFGF 64
+++ +A +L+KPFLHTGSWYKMGSRQSSIM SS Q++RDG+VSV+FCVL+VALGPIQFGF
Sbjct: 2 EESGDARDLQKPFLHTGSWYKMGSRQSSIMGSSTQVIRDGAVSVLFCVLIVALGPIQFGF 61
Query: 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124
TCGYSSPTQ I+ DL L+ISEFS FGSL+NVGAMVGAIASGQIAEYIGRKGSLMIAA+P
Sbjct: 62 TCGYSSPTQGAIVRDLNLSISEFSFFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIAAIP 121
Query: 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVT 184
NIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISY VPVYIAEIAPQN+RG LGSVNQLSVT
Sbjct: 122 NIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYVVPVYIAEIAPQNLRGGLGSVNQLSVT 181
Query: 185 IGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLR 244
IGIMLAYLLGLFVNWRVLA+LG+LPCT+LIPGLFFIPESPRWLAKMGM ++FE+SLQVLR
Sbjct: 182 IGIMLAYLLGLFVNWRVLAILGILPCTVLIPGLFFIPESPRWLAKMGMIDEFETSLQVLR 241
Query: 245 GFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLF 304
GFDTDIS+EV+EIKRSVAS+ +R AIRFA+LKRKRYWFPLM+GIGLLVLQQLSGING+LF
Sbjct: 242 GFDTDISVEVHEIKRSVASTGKRAAIRFADLKRKRYWFPLMVGIGLLVLQQLSGINGILF 301
Query: 305 YSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364
YS+ IFANAGISSS AT GLG VQV+ATG++TWL+DK+GRRLLL+ISSS M S +VS
Sbjct: 302 YSTTIFANAGISSSEAATVGLGAVQVIATGISTWLVDKSGRRLLLIISSSVMTVSLLIVS 361
Query: 365 VAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
+AF+LEG VSEDS +SILGI+S+VGLV +VI FSLG+G IPW+IMSE+
Sbjct: 362 IAFYLEGVVSEDSHLFSILGIVSIVGLVAMVIGFSLGLGPIPWLIMSEI 410
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065573|ref|XP_002301864.1| predicted protein [Populus trichocarpa] gi|222843590|gb|EEE81137.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/414 (80%), Positives = 384/414 (92%), Gaps = 2/414 (0%)
Query: 1 MSFRDDNEEA-ANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDD+E+ ++RKPFLHTGSWY+M SRQSS+M SS Q +RD S+SVV CVL+VALGP
Sbjct: 1 MSFRDDSEDGRGDIRKPFLHTGSWYRMSSRQSSMMGSS-QAIRDNSISVVACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFT GYSSPTQA I++DL LT+SEFS+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTSGYSSPTQASIMADLGLTVSEFSLFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQN+RG+LGSVN
Sbjct: 120 IAAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTEDFESS
Sbjct: 180 QLSVTIGIMLAYLLGLFVEWRILAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFESS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGFDTDIS+EV+EIKR++AS+SRRT IRFAELKRKRYWFPL +GIGLLVLQQLSGI
Sbjct: 240 LQVLRGFDTDISVEVHEIKRAIASTSRRTTIRFAELKRKRYWFPLTVGIGLLVLQQLSGI 299
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359
NGVLFYSSNIFA AGI SSNVAT G+G +QV+ATGV TWL+D+ GRRLLL++S+SGM S
Sbjct: 300 NGVLFYSSNIFATAGIKSSNVATVGVGAIQVIATGVTTWLVDRTGRRLLLIVSTSGMTIS 359
Query: 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
+V+V+FF++GFV EDS YSILGILS+VG+V +V++FSLG+GAIPWVIMSE+
Sbjct: 360 LLIVAVSFFVKGFVPEDSSLYSILGILSVVGVVAMVVTFSLGMGAIPWVIMSEI 413
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538660|ref|XP_002510395.1| sugar transporter, putative [Ricinus communis] gi|223551096|gb|EEF52582.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/414 (79%), Positives = 380/414 (91%), Gaps = 2/414 (0%)
Query: 1 MSFRDDNEEA-ANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDD+E+A +LRKPFLHTGSWY+MGSRQSS+M SS Q++RD S+SVV CVL+VALGP
Sbjct: 1 MSFRDDSEDARGDLRKPFLHTGSWYRMGSRQSSMMGSS-QVIRDSSISVVACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQ I DLKL++SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQTAITDDLKLSVSEYSLFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNI+GWL ISF+ D+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQN+RG+LGSVN
Sbjct: 120 IAAIPNILGWLAISFAHDASFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLFFIPESPRWLAKMGMTEDFE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVQWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTEDFEAS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGFDTDIS+EVNEIKRSVAS+SRR+ IRF ELKR+RYW PLMIGIGLLVLQQLSGI
Sbjct: 240 LQVLRGFDTDISLEVNEIKRSVASTSRRSTIRFVELKRRRYWLPLMIGIGLLVLQQLSGI 299
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359
NGVLFYSS IF +AG+ +SNVAT GLG +QV+ATGV T ++DKAGRRLLL+ISSS MA S
Sbjct: 300 NGVLFYSSTIFESAGVKNSNVATCGLGAIQVIATGVTTSIVDKAGRRLLLIISSSAMAIS 359
Query: 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
LV+V+FF++ FVS+ S YSILGILS+VG++ +V+ FSLG+G IPW+IMSE+
Sbjct: 360 LLLVAVSFFVQDFVSDQSHLYSILGILSIVGVLGMVVGFSLGMGPIPWIIMSEI 413
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357518263|ref|XP_003629420.1| Sugar transporter ERD6-like protein [Medicago truncatula] gi|355523442|gb|AET03896.1| Sugar transporter ERD6-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/413 (78%), Positives = 382/413 (92%), Gaps = 1/413 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR+++ + +L+KPFLHTGSWYKMGSRQSS+M S+ ++RD SVSV+FCVL+ ALGPI
Sbjct: 1 MSFREESGDGRDLQKPFLHTGSWYKMGSRQSSVMGSTTSVMRD-SVSVLFCVLIAALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ II+DLKL++SEFS+FGSL+NVGAMVGAIASGQIAEY+GRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQQAIINDLKLSVSEFSLFGSLSNVGAMVGAIASGQIAEYVGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
A++PNIIGWL ISF+KDSSFLFMGRLLEGFGVG+ISY VPVYIAEIAP+NMRGSLGSVNQ
Sbjct: 120 ASIPNIIGWLAISFAKDSSFLFMGRLLEGFGVGIISYVVPVYIAEIAPENMRGSLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVTIGIMLAYLLGLF NWRVLA+LG+LPCT+LIPGLFFIPESPRWLAKMGM E+FE+SL
Sbjct: 180 LSVTIGIMLAYLLGLFANWRVLAILGILPCTVLIPGLFFIPESPRWLAKMGMMEEFETSL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV+EIK++VAS+ +R IRFA+L+RKRYWFPL +GIGLLVLQQLSGIN
Sbjct: 240 QVLRGFDTDISVEVHEIKKAVASNGKRATIRFADLQRKRYWFPLSVGIGLLVLQQLSGIN 299
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
GVLFYS++IFANAGISSSN AT GLG +QV+ATGV TWL+DK+GRR+LL+ISSS M AS
Sbjct: 300 GVLFYSTSIFANAGISSSNAATVGLGAIQVIATGVATWLVDKSGRRVLLIISSSLMTASL 359
Query: 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
+VS+AF+LEG V +DS+++SILGI+S+VGLV +VI FSLG+G IPW+IMSE+
Sbjct: 360 LVVSIAFYLEGVVEKDSQYFSILGIISVVGLVVMVIGFSLGLGPIPWLIMSEI 412
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503024|ref|XP_003520312.1| PREDICTED: sugar transporter ERD6-like 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/413 (79%), Positives = 380/413 (92%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR+++ +A +L+KPFLHTGSWYKMGSRQSSIM SS ++RDG+VSV+FCVL+VALGPI
Sbjct: 1 MSFREESGDARDLQKPFLHTGSWYKMGSRQSSIMGSSTHVIRDGAVSVLFCVLIVALGPI 60
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ I+ DL L+ISEFS FGSL+NVGAMVGAIASGQIAEYIGRKGSLMI
Sbjct: 61 QFGFTCGYSSPTQGAIVRDLNLSISEFSFFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 120
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
AA+PNIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISY VPVYIAEIAPQ++RG LGSVNQ
Sbjct: 121 AAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYVVPVYIAEIAPQHLRGGLGSVNQ 180
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LS+TIGIMLAYLLGLFVNWRVLA+LG+LPCT+LIPGLFFIPESPRWLAKMGMT++FE+SL
Sbjct: 181 LSITIGIMLAYLLGLFVNWRVLAILGILPCTVLIPGLFFIPESPRWLAKMGMTDEFETSL 240
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV EIKRSVAS+ +R IRFA+LKRKRYWFPLM+GIGLLVLQQLSGIN
Sbjct: 241 QVLRGFDTDISVEVYEIKRSVASTGKRATIRFADLKRKRYWFPLMVGIGLLVLQQLSGIN 300
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
GVLFYS+ IFANAGISSS AT GLG VQV+ATG++TWL+DK+GRRLLL+ISSS M S
Sbjct: 301 GVLFYSTTIFANAGISSSEAATVGLGAVQVIATGISTWLVDKSGRRLLLMISSSVMTVSL 360
Query: 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
+VS+AF+LEG VSEDS +S+LGI+S+VGLV +VI FSLG+G IPW+IMSE+
Sbjct: 361 LIVSIAFYLEGVVSEDSHLFSMLGIVSVVGLVVMVIGFSLGLGPIPWLIMSEI 413
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097006|ref|XP_002310808.1| predicted protein [Populus trichocarpa] gi|222853711|gb|EEE91258.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/414 (80%), Positives = 381/414 (92%), Gaps = 1/414 (0%)
Query: 1 MSFRDDNEEAAN-LRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MS RDD EEA + LRKP L TGSWY+M SRQSSIMSSSAQMLRDGSVSVV CVL+VALGP
Sbjct: 1 MSQRDDAEEARDQLRKPLLQTGSWYRMSSRQSSIMSSSAQMLRDGSVSVVLCVLIVALGP 60
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQAEIISDLKL+ISEFS+FGSL+NVGAM+GA+ SGQ+AEYIGRKGSL+
Sbjct: 61 IQFGFTCGYSSPTQAEIISDLKLSISEFSMFGSLSNVGAMIGALVSGQLAEYIGRKGSLV 120
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
+AAVPNIIGWL ISF+ DSSFLFMGRLLEGFGVG+ISYTVPVYIAEIAPQ+MRGSLGSVN
Sbjct: 121 VAAVPNIIGWLSISFAVDSSFLFMGRLLEGFGVGIISYTVPVYIAEIAPQDMRGSLGSVN 180
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGI+L+YLLGLFVNWRVLAVLG PC LLI GLFFIPESPRWLAKMGMTEDFE+S
Sbjct: 181 QLSVTIGILLSYLLGLFVNWRVLAVLGCFPCALLILGLFFIPESPRWLAKMGMTEDFEAS 240
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRG+DTDI+ EVNEIKR+VASSS+RT IRFA+LKR+RYWFPLM+GIGLLVLQQ SGI
Sbjct: 241 LQVLRGYDTDITAEVNEIKRAVASSSKRTTIRFADLKRRRYWFPLMVGIGLLVLQQFSGI 300
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359
NG+ FYSSNIFANAGISSSN+AT GLG +QV+ATG+++WLMDKAGRRLLL+IS++G+ S
Sbjct: 301 NGIFFYSSNIFANAGISSSNLATCGLGAIQVIATGISSWLMDKAGRRLLLIISTTGVTLS 360
Query: 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
LV++AF+L+G + +DS Y I+GI+SL GLV VVI FS+G+GAIPW+IMSE+
Sbjct: 361 LLLVAIAFYLQGILPQDSDLYHIMGIVSLGGLVAVVIFFSVGLGAIPWIIMSEI 414
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460263|ref|XP_004147865.1| PREDICTED: sugar transporter ERD6-like 6-like [Cucumis sativus] gi|449476810|ref|XP_004154840.1| PREDICTED: sugar transporter ERD6-like 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/413 (78%), Positives = 375/413 (90%), Gaps = 1/413 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFRDDNEE +LRKPFLHTGSWY+MGSRQSS+M SS Q +RD S+SV+ CVL+VALGPI
Sbjct: 1 MSFRDDNEEGRDLRKPFLHTGSWYRMGSRQSSMMGSS-QGIRDSSISVLACVLIVALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ+ I+ DL+LT+ E+S+FGSL+NVGAMVGAI+SGQIAEYIGRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQSSIMKDLRLTVPEYSVFGSLSNVGAMVGAISSGQIAEYIGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
AA+PNIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQN+RG LGSVNQ
Sbjct: 120 AAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGGLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVTIGI+LAYLLGLFV WR+LAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTE+FE+SL
Sbjct: 180 LSVTIGILLAYLLGLFVPWRLLAVLGILPCTVLIPGLFFIPESPRWLAKMGMTEEFETSL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFD DISIEVNEIKRSVA++++RT IRFAELKR+RYWFPLMIGIGLL+LQQL+GIN
Sbjct: 240 QVLRGFDADISIEVNEIKRSVATTTKRTTIRFAELKRRRYWFPLMIGIGLLMLQQLTGIN 299
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
VLFYSS IFA AG+ SSNVAT GLG VQVVAT V TWL+D+AGRR+LL++S++GM S
Sbjct: 300 AVLFYSSTIFAAAGVESSNVATCGLGAVQVVATAVTTWLVDRAGRRILLIVSTAGMTFSL 359
Query: 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
+VSV FFL+ S+ S Y+IL ILS+V +V +V+ FSLG+GAIPWVIMSE+
Sbjct: 360 LIVSVVFFLKDLTSDTSSLYNILSILSVVSVVALVVFFSLGLGAIPWVIMSEI 412
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255561092|ref|XP_002521558.1| sugar transporter, putative [Ricinus communis] gi|223539236|gb|EEF40829.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/410 (80%), Positives = 380/410 (92%), Gaps = 2/410 (0%)
Query: 6 DNEEAAN--LRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFG 63
EEA + +RKP LHTGSWY+M SRQSS+M SS+Q +RDG+VSVV CVL+VALGPIQFG
Sbjct: 3 SREEAGDDGVRKPLLHTGSWYRMSSRQSSMMGSSSQYIRDGAVSVVLCVLIVALGPIQFG 62
Query: 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123
FTCGYSSPTQAEII DL L+ISEFS+FGSL+NVGAMVGAIASGQ+AEYIGRKGSLM+AA+
Sbjct: 63 FTCGYSSPTQAEIIRDLNLSISEFSLFGSLSNVGAMVGAIASGQMAEYIGRKGSLMVAAI 122
Query: 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSV 183
PNIIGWL ISF+KDSSFLFMGRLLEGFGVG+ISYTVPVYIAEIAPQN RGSLGSVNQLSV
Sbjct: 123 PNIIGWLSISFAKDSSFLFMGRLLEGFGVGIISYTVPVYIAEIAPQNRRGSLGSVNQLSV 182
Query: 184 TIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVL 243
T+GIMLAYLLGLFV+WR+LAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTEDFE+SLQVL
Sbjct: 183 TLGIMLAYLLGLFVHWRLLAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFEASLQVL 242
Query: 244 RGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVL 303
RGFDTDIS EVNEIKRSVASS++R+ +RFA+L+R+RYWFPLM+GIGLL+LQQLSGING+L
Sbjct: 243 RGFDTDISAEVNEIKRSVASSTKRSTVRFADLRRRRYWFPLMVGIGLLMLQQLSGINGIL 302
Query: 304 FYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 363
FYSSNIF +AG+SS N+AT GLGV+QV+ATGV TWL+DKAGRRLLL++S+SG+ S LV
Sbjct: 303 FYSSNIFESAGLSSGNLATVGLGVIQVLATGVTTWLVDKAGRRLLLIVSTSGITVSLLLV 362
Query: 364 SVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
+VAF+LEG VS+DS Y I+GILSLVGLV ++I FSLG+GAIPW+IMSE+
Sbjct: 363 AVAFYLEGNVSKDSHLYGIMGILSLVGLVAMIIFFSLGLGAIPWIIMSEI 412
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 413 | ||||||
| TAIR|locus:2025132 | 487 | ERDL6 "ERD6-like 6" [Arabidops | 0.997 | 0.845 | 0.722 | 2.5e-159 | |
| TAIR|locus:2016407 | 488 | AT1G19450 [Arabidopsis thalian | 0.997 | 0.844 | 0.727 | 5.3e-159 | |
| TAIR|locus:2066400 | 463 | AT2G48020 [Arabidopsis thalian | 0.849 | 0.758 | 0.421 | 5e-76 | |
| TAIR|locus:2199539 | 470 | AT1G54730 [Arabidopsis thalian | 0.849 | 0.746 | 0.438 | 8.1e-76 | |
| TAIR|locus:2144975 | 482 | AT5G18840 "AT5G18840" [Arabido | 0.852 | 0.730 | 0.421 | 9.3e-75 | |
| TAIR|locus:2096219 | 470 | AT3G05150 [Arabidopsis thalian | 0.849 | 0.746 | 0.420 | 2.9e-71 | |
| TAIR|locus:2036084 | 496 | ERD6 "EARLY RESPONSE TO DEHYDR | 0.837 | 0.697 | 0.393 | 3.8e-69 | |
| TAIR|locus:2146350 | 474 | SFP1 [Arabidopsis thaliana (ta | 0.847 | 0.738 | 0.394 | 6.5e-67 | |
| TAIR|locus:2079802 | 462 | AT3G05400 [Arabidopsis thalian | 0.840 | 0.751 | 0.414 | 2.8e-66 | |
| TAIR|locus:505006329 | 467 | AT3G05165 [Arabidopsis thalian | 0.837 | 0.740 | 0.396 | 2e-65 |
| TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1552 (551.4 bits), Expect = 2.5e-159, P = 2.5e-159
Identities = 299/414 (72%), Positives = 345/414 (83%)
Query: 1 MSFRDDNEEAAN-LRKPFLHTGSWYKMGXXXXXXXXXXAQMLRDGSXXXXXXXXXXALGP 59
MSFRDDNEEA N LR+PF+HTGSWY+MG +Q++RD S ALGP
Sbjct: 1 MSFRDDNEEARNDLRRPFIHTGSWYRMGSRQSSMMGS-SQVIRDSSISVLACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQNMRG LGSVN
Sbjct: 120 IAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLFFIPESPRWLAKMGMT++FE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGF+TDI++EVNEIKRSVASS++R +RF +LKR+RY+FPLM+GIGLLVLQQL GI
Sbjct: 240 LQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFPLMVGIGLLVLQQLGGI 299
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMXXX 359
NGVLFYSS IF +AG++SSN ATFG+G +QVVAT ++TWL+DKAGRR GM
Sbjct: 300 NGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKAGRRLLLTISSVGMTIS 359
Query: 360 XXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
+ FVS DS YS L ILS+VG+V +V+ FSLG+G IPW+IMSE+
Sbjct: 360 LVIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLGMGPIPWLIMSEI 413
|
|
| TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1549 (550.3 bits), Expect = 5.3e-159, P = 5.3e-159
Identities = 302/415 (72%), Positives = 348/415 (83%)
Query: 1 MSFRDDN-EEAAN-LRKPFLHTGSWYKMGXXXXXXXXXXAQMLRDGSXXXXXXXXXXALG 58
MSFRDDN EE N LR+PFLHTGSWY+MG +Q++RD S ALG
Sbjct: 1 MSFRDDNTEEGRNDLRRPFLHTGSWYRMGSRQSSMLES-SQVIRDSSISVLACVLIVALG 59
Query: 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL 118
PIQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEY+GRKGSL
Sbjct: 60 PIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYVGRKGSL 119
Query: 119 MIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 178
MIAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQ MRG+LGSV
Sbjct: 120 MIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQTMRGALGSV 179
Query: 179 NQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFES 238
NQLSVTIGIMLAYLLGLFV WR+LAVLGVLPCTLLIPGLFFIPESPRWLAKMG+T+DFE+
Sbjct: 180 NQLSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLFFIPESPRWLAKMGLTDDFET 239
Query: 239 SLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298
SLQVLRGF+TDI++EVNEIKRSVASSS+R+A+RF +LKR+RY+FPLM+GIGLL LQQL G
Sbjct: 240 SLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYFPLMVGIGLLALQQLGG 299
Query: 299 INGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMXX 358
INGVLFYSS IF +AG++SSNVATFG+GVVQVVATG+ TWL+DKAGRR GM
Sbjct: 300 INGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDKAGRRLLLMISSIGMTI 359
Query: 359 XXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
+ FVS DS Y+IL ++S+VG+V +VIS SLG+G IPW+IMSE+
Sbjct: 360 SLVIVAVAFYLKEFVSPDSNMYNILSMVSVVGVVAMVISCSLGMGPIPWLIMSEI 414
|
|
| TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
Identities = 150/356 (42%), Positives = 226/356 (63%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GYSSP QA I +DL LTI+EFS+FGSL GAM+GAI SG IA+ +GRKG+
Sbjct: 38 GSFAFGSCAGYSSPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITSGPIADLVGRKGA 97
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ +++ ++GWL I F+K L +GRL G+G+G SY VP++IAEIAP+ RG+L +
Sbjct: 98 MRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFSYVVPIFIAEIAPKTFRGALTT 157
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
+NQ+ + G+ +++++G V WRVLA++G++PC GLFFIPESPRWLAK+G +FE
Sbjct: 158 LNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASFLGLFFIPESPRWLAKVGRDTEFE 217
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
++L+ LRG DIS E EI+ + + R + +L ++RY ++I GL+V QQ
Sbjct: 218 AALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVLIAFGLMVFQQFG 277
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMX 357
GING+ FY+S+IF AG + + V+QVV T +N ++D+AGR+ G+
Sbjct: 278 GINGICFYTSSIFEQAGFPT-RLGMIIYAVLQVVITALNAPIVDRAGRKPLLLVSATGLV 336
Query: 358 XXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
++ + + +L++VG++ + SFS G+GA+PWV+MSE+
Sbjct: 337 IGCLIAAVSF----YLKVHDMAHEAVPVLAVVGIMVYIGSFSAGMGAMPWVVMSEI 388
|
|
| TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 156/356 (43%), Positives = 228/356 (64%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GYSSP Q+++ +L L+++E+S+FGS+ +GAM+GA SG+IA+ IGR+ +
Sbjct: 42 GSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGRIADMIGRRAT 101
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ + + I+GWL I SK + +L +GR L G+G+GV S+ VPVYIAEI P+ +RG +
Sbjct: 102 MGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGFTT 161
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
V+QL + +G+ + YLLG F+ WR+LA++G++PC + + GLF IPESPRWLAK+G E+FE
Sbjct: 162 VHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWLAKVGKWEEFE 221
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG DIS E NEIK + + +L + +Y L++G+GL+VLQQ
Sbjct: 222 IALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVGVGLMVLQQFG 281
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMX 357
G+NG+ FY+S+IF +AG+SS + + VVQ+ T + LMDK+GRR G
Sbjct: 282 GVNGIAFYASSIFESAGVSSK-IGMIAMVVVQIPMTTLGVLLMDKSGRRPLLLISATGTC 340
Query: 358 XXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
+ FV + S S L +L G++ SFSLG+G IPWVIMSE+
Sbjct: 341 IGCFLVGLSFSLQ-FVKQLSGDASYL---ALTGVLVYTGSFSLGMGGIPWVIMSEI 392
|
|
| TAIR|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 150/356 (42%), Positives = 225/356 (63%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G +FG GYS+PTQ+ I DL L+++EFS+FGS+ +GAM+GA+ SG+I+++ GRKG+
Sbjct: 54 GSFEFGSCVGYSAPTQSSIRQDLNLSLAEFSMFGSILTIGAMLGAVMSGKISDFSGRKGA 113
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ +A I GWL + F+K + L +GR G+G+GV SY VPVYIAEI+P+N+RG L +
Sbjct: 114 MRTSACFCITGWLAVFFTKGALLLDVGRFFTGYGIGVFSYVVPVYIAEISPKNLRGGLTT 173
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
+NQL + IG +++L+G ++W+ LA+ G+ PC +L+ GL FIPESPRWLAK G ++F
Sbjct: 174 LNQLMIVIGSSVSFLIGSLISWKTLALTGLAPCIVLLFGLCFIPESPRWLAKAGHEKEFR 233
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG D DI+ E + I+ S+ + R +L K+Y ++IG+ L+V QQ
Sbjct: 234 VALQKLRGKDADITNEADGIQVSIQALEILPKARIQDLVSKKYGRSVIIGVSLMVFQQFV 293
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMX 357
GING+ FY+S F AG +S + T + VQV T + T L+DK+GRR G+
Sbjct: 294 GINGIGFYASETFVKAGFTSGKLGTIAIACVQVPITVLGTILIDKSGRRPLIMISAGGIF 353
Query: 358 XXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
+G S + L++ G++ V +FS+G+G +PWVIMSE+
Sbjct: 354 LGCILTGTSFLLKG----QSLLLEWVPSLAVGGVLIYVAAFSIGMGPVPWVIMSEI 405
|
|
| TAIR|locus:2096219 AT3G05150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 150/357 (42%), Positives = 223/357 (62%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G +FG GYS+PTQ I+ +L L+ S+FS+FGS+ N+GA++GAI SG+I+++IGRKG+
Sbjct: 45 GSYEFGTCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMGAVLGAITSGKISDFIGRKGA 104
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ +++V + IGWLII +K L GR L G+G G +S+ VPV+IAEI+P+ +RG+L +
Sbjct: 105 MRLSSVISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAEISPRKLRGALAT 164
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
+NQL + IG+ +L+G VNWR LA+ GV PC +L G +FIPESPRWL +G DFE
Sbjct: 165 LNQLFIVIGLASMFLIGAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWLEMVGRHSDFE 224
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG +I+ E EI+ +AS + +L K+ +++G+GL+ QQ
Sbjct: 225 IALQKLRGPQANITREAGEIQEYLASLAHLPKATLMDLIDKKNIRFVIVGVGLMFFQQFV 284
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVN-TWLMDKAGRRXXXXXXXXGM 356
GINGV+FY+ IF +AG +S + + + QVV T + T L+D+ GRR GM
Sbjct: 285 GINGVIFYAQQIFVSAG-ASPTLGSILYSIEQVVLTALGATLLIDRLGRRPLLMASAVGM 343
Query: 357 XXXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
+ I+ L++ G++ + SFS+G+GAIPWVIMSE+
Sbjct: 344 LIGCLLIGNSF----LLKAHGLALDIIPALAVSGVLVYIGSFSIGMGAIPWVIMSEI 396
|
|
| TAIR|locus:2036084 ERD6 "EARLY RESPONSE TO DEHYDRATION 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
Identities = 138/351 (39%), Positives = 218/351 (62%)
Query: 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAA 122
G G+SS QA I DL L+++E+S+FGS+ +G ++GA+ SG++A+ +GRK +++
Sbjct: 73 GCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGKVADVLGRKRTMLFCE 132
Query: 123 VPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLS 182
I GWL ++ ++++ +L GRLL G GVG+ SY +PVYIAEIAP+++RGS NQL
Sbjct: 133 FFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVRGSFVFANQLM 192
Query: 183 VTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQV 242
GI L +++G F+ WR+L V+G++PC + LFFIPESPRWLAK+G ++ SSLQ
Sbjct: 193 QNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWLAKLGRDKECRSSLQR 252
Query: 243 LRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGV 302
LRG D DIS E N I+ ++ + + +EL ++RY +PL+IG+GL+ LQQL G +GV
Sbjct: 253 LRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPLIIGVGLMFLQQLCGSSGV 312
Query: 303 LFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMXXXXXX 362
+Y+S++F G S+ + T + + V + T L+DK GRR M
Sbjct: 313 TYYASSLFNKGGFPSA-IGTSVIATIMVPKAMLATVLVDKMGRRTLLMASCSAMGLSALL 371
Query: 363 XXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
+ F + I + +G++ ++SF++G+G +PW+IM+E+
Sbjct: 372 LSVSYGFQSF----GILPELTPIFTCIGVLGHIVSFAMGMGGLPWIIMAEI 418
|
|
| TAIR|locus:2146350 SFP1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 141/357 (39%), Positives = 213/357 (59%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GY+S + ++ DL L+I++FS FGS A +GA +GA+ G +A IGR+G+
Sbjct: 41 GSFSFGVATGYTSGAETGVMKDLDLSIAQFSAFGSFATLGAAIGALFCGNLAMVIGRRGT 100
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ ++ I GWL I+F+K+ L GR++ G G G+ SY VPVYIAEI P+++RG+
Sbjct: 101 MWVSDFLCITGWLSIAFAKEVVLLNFGRIISGIGFGLTSYVVPVYIAEITPKHVRGTFTF 160
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
NQL G+ + Y G F+ WR LA+LG LPC + + GLFF+PESPRWLAK+G ++ E
Sbjct: 161 SNQLLQNAGLAMIYFCGNFITWRTLALLGALPCFIQVIGLFFVPESPRWLAKVGSDKELE 220
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+SL LRG D DIS E +EI+ + F++L +++Y + L++GIGL+++QQ S
Sbjct: 221 NSLFRLRGRDADISREASEIQVMTKMVENDSKSSFSDLFQRKYRYTLVVGIGLMLIQQFS 280
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMX 357
G V+ Y+S IF AG S + + T LG+ + + L+DK GRR GM
Sbjct: 281 GSAAVISYASTIFRKAGFSVA-IGTTMLGIFVIPKAMIGLILVDKWGRRPLLMTSAFGMS 339
Query: 358 XXXXXXXXXXXXEGFVSEDSRFYSILG-ILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
F + + S L ILS + ++ + ++++G+G +PWVIMSE+
Sbjct: 340 MTCMLLGVA-----FTLQKMQLLSELTPILSFICVMMYIATYAIGLGGLPWVIMSEI 391
|
|
| TAIR|locus:2079802 AT3G05400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 146/352 (41%), Positives = 207/352 (58%)
Query: 62 FGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA 121
FG GY++ T + I+SDL L++++FS+FGSL+ G M+GAI S + A G K +L +A
Sbjct: 40 FGAAIGYTADTMSSIMSDLDLSLAQFSLFGSLSTFGGMIGAIFSAKAASAFGHKMTLWVA 99
Query: 122 AVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQL 181
+ I GWL IS +KD +L MGR L G GVG+ISY VPVYIAEI P+++RG+ NQL
Sbjct: 100 DLFCITGWLAISLAKDIIWLDMGRFLVGIGVGLISYVVPVYIAEITPKHVRGAFTFSNQL 159
Query: 182 SVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQ 241
G+ + Y G F++WR LA++G +PC + + GLFFIPESPRWLAK G ++ E LQ
Sbjct: 160 LQNCGVAVVYYFGNFLSWRTLAIIGSIPCWIQVIGLFFIPESPRWLAKKGRDKECEEVLQ 219
Query: 242 VLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 301
LRG DI E EIK SV +S + + I L KRY L IGIGL++LQQL G G
Sbjct: 220 KLRGRKYDIVPEACEIKISVEASKKNSNINIRSLFEKRYAHQLTIGIGLMLLQQLCGTAG 279
Query: 302 VLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMXXXXX 361
+ Y S +F AG + + L ++ V + + L+D+ GRR G+
Sbjct: 280 ISSYGSTLFKLAGFPA-RIGMMVLSLIVVPKSLMGLILVDRWGRRPLLMTSALGLCLSCI 338
Query: 362 XXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
V + I I +G+++ + F++G+GA+PW+IMSE+
Sbjct: 339 TLAVAFG----VKDVPGIGKITPIFCFIGILSFTMMFAIGMGALPWIIMSEI 386
|
|
| TAIR|locus:505006329 AT3G05165 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 140/353 (39%), Positives = 211/353 (59%)
Query: 62 FGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA 121
+G GY+S + I+ +L L++++FS FGS NVG VGA+ SGQ+A +GR+ +L
Sbjct: 44 YGCAAGYTSGAETAIMKELDLSMAQFSAFGSFLNVGGAVGALFSGQLAVILGRRRTLWAC 103
Query: 122 AVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQL 181
+ GWL I+F+K+ +L +GR+ G GVG+ISY VPVYIAEI P+++RG+ + NQL
Sbjct: 104 DFFCVFGWLSIAFAKNVFWLDLGRISLGIGVGLISYVVPVYIAEITPKHVRGAFTASNQL 163
Query: 182 SVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQ 241
G+ L Y G +NWRV+AV+G +PC L G+FFIPESPRWLAK+ ++++ ESSL
Sbjct: 164 LQNSGVSLIYFFGTVINWRVMAVIGAIPCILQTIGIFFIPESPRWLAKIRLSKEVESSLH 223
Query: 242 VLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 301
LRG DTD+S E EI+ + F+++ +K+Y L++GIGL+++QQLSG +G
Sbjct: 224 RLRGKDTDVSGEAAEIQVMTKMLEEDSKSSFSDMFQKKYRRTLVVGIGLMLIQQLSGASG 283
Query: 302 VLFYSSNIFANAGISSS-NVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMXXXX 360
+ +YS+ IF AG S FG+ V+ G+ L+D+ GRR GM
Sbjct: 284 ITYYSNAIFRKAGFSERLGSMIFGVFVIPKALVGLI--LVDRWGRRPLLLASAVGMSIGS 341
Query: 361 XXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
+ + + ++ I V ++ F+ G+G +PWVIMSE+
Sbjct: 342 LLIGVSFTLQ----QMNVLPELIPIFVFVNILVYFGCFAFGIGGLPWVIMSEI 390
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q93YP9 | ERDL4_ARATH | No assigned EC number | 0.7831 | 0.9975 | 0.8442 | no | no |
| Q9JJZ1 | GTR8_RAT | No assigned EC number | 0.3341 | 0.9273 | 0.8012 | yes | no |
| Q9FRL3 | ERDL6_ARATH | No assigned EC number | 0.7826 | 0.9975 | 0.8459 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 413 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-78 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 4e-63 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 1e-41 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 5e-21 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 4e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-13 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-12 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 2e-08 | |
| PRK15075 | 434 | PRK15075, PRK15075, citrate-proton symporter; Prov | 3e-07 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-06 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 5e-06 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 3e-05 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-04 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 4e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 0.001 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 0.002 | |
| COG2270 | 438 | COG2270, COG2270, Permeases of the major facilitat | 0.003 | |
| TIGR00792 | 437 | TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuron | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 249 bits (638), Expect = 1e-78
Identities = 140/384 (36%), Positives = 212/384 (55%), Gaps = 29/384 (7%)
Query: 51 CVLVVALGPIQFGFTCGYSSPTQAEI-----------ISDLKLTISEFSIFGSLANVGAM 99
LV ALG FG+ G I I + + S+ +VG +
Sbjct: 1 LALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCL 60
Query: 100 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF--LFMGRLLEGFGVGVISY 157
+G++ +G++ + GRK SL+I V +IG L+ F+K SF L +GR++ G GVG IS
Sbjct: 61 IGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISV 120
Query: 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN-------WRVLAVLGVLPC 210
VP+YI+EIAP+ +RG+LGS+ QL +T GI++A ++GL +N WR+ L +P
Sbjct: 121 LVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPA 180
Query: 211 TLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAI 270
LL+ GL F+PESPRWL G E+ + L LRG D+ E+ E K S+ S
Sbjct: 181 ILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVS-DVDQEIQEEKDSLERSVEAEKA 239
Query: 271 RFAELKRKR-YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQ 329
+ EL R + L++G+ L + QQL+GIN + +YS IF G+S S + T +GVV
Sbjct: 240 SWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVN 299
Query: 330 VVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLV 389
V T + +L+D+ GRR LLL+ ++GMA F ++ VA GI+++V
Sbjct: 300 FVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGV-------AKSKGAGIVAIV 352
Query: 390 GLVTVVISFSLGVGAIPWVIMSEV 413
++ + F+LG G +PWVI+SE+
Sbjct: 353 FILLFIAFFALGWGPVPWVIVSEL 376
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 4e-63
Identities = 126/398 (31%), Positives = 205/398 (51%), Gaps = 30/398 (7%)
Query: 41 LRDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLT--------ISEFSIFGS 92
L V L+ A+G + FG+ G A + K T S + + S
Sbjct: 19 LGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVS 78
Query: 93 LANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF---LFMGRLLEG 149
+ VG +GA+ +G +++ GRK SL+I A+ +IG +++ + + L +GR+L G
Sbjct: 79 IFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLG 138
Query: 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-------VNWRVL 202
GVG+ S VP+Y++EIAP+ +RG+L S+ QL++T GI++AY G + WR+
Sbjct: 139 IGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIP 198
Query: 203 AVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVA 262
L ++P LL GLFF+PESPRWL G E+ SL LRG + ++E++
Sbjct: 199 LGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDI 258
Query: 263 SSSRRTAIRFAELKRKRYWF-----PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISS 317
S L +G+ L QQ +GIN +++YS IF NAG+S+
Sbjct: 259 KRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST 318
Query: 318 SN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSE 375
+ + + +G V T V +L+D+ GRR LLLI ++GMA F++ + S
Sbjct: 319 DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGA-----SF 373
Query: 376 DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
+ G +++V ++ + F++G G +PWVI+SE+
Sbjct: 374 VTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEI 411
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 1e-41
Identities = 111/400 (27%), Positives = 178/400 (44%), Gaps = 51/400 (12%)
Query: 48 VVFCVLVVALGPIQFGFTCGYSSPTQ--------AEIISDLKLTISEFSIFGSLANVGAM 99
+ LV LG + FG+ S T A S + A +G +
Sbjct: 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCI 69
Query: 100 VGAIASGQIAEYIGRKGSLMIAAVPNIIG--------WLIISFSKDSSFLFMG----RLL 147
+G G + GR+ SL IAAV I + S D++ R++
Sbjct: 70 IGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII 129
Query: 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---------- 197
G GVG+ S P+YIAEIAP ++RG L S NQ ++ G ++ Y + F+
Sbjct: 130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLN 189
Query: 198 --NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN 255
WR + +P L + L+F+PE+PR+L G E E L+ + G +T + +
Sbjct: 190 TDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG-NTLATQALQ 248
Query: 256 EIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGI 315
EIK S+ + ++IG+ L V QQ GIN VL+Y+ IF G
Sbjct: 249 EIKHSLDHGRKTGGKLLMFGV-----GVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGA 303
Query: 316 SSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFV 373
S+ + T +GV+ + T + +DK GR+ L +I + GMA F + AF
Sbjct: 304 STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF------ 357
Query: 374 SEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
+ GI++L+ ++ V +F++ G + WV++SE+
Sbjct: 358 -----YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEI 392
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 5e-21
Identities = 83/318 (26%), Positives = 140/318 (44%), Gaps = 26/318 (8%)
Query: 89 IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148
+ S VG ++G+ G +++ GRK L+++ + + ++ +FS + + + RLL
Sbjct: 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV 190
Query: 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-NWRVLAVLGV 207
G G+G I V E P+ R +G++ Q+ ++G++L L+ F+ +WR L +
Sbjct: 191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVS 250
Query: 208 LPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD-TDISIEVNEIKRSVASSSR 266
LP L +F+PESPRWL G E+ LQ + + + EV + SS
Sbjct: 251 LPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSS 310
Query: 267 RTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYS-----SNIFANAGISSSNVA 321
+ F +L R + L L L +Y N+ N + ++
Sbjct: 311 KKQYSFLDLFRTPN-----LRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYL---DLF 362
Query: 322 TFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYS 381
GL V++ A + L+D+ GRR MAAS L VA L FV D F
Sbjct: 363 ISGL--VELPAKLITLLLIDRLGRRY-------TMAASLLLAGVALLLLLFVPVDLYFLR 413
Query: 382 ILGILSLVGLVTVVISFS 399
L+++G + +F
Sbjct: 414 T--ALAVLGKFGITSAFQ 429
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 76.9 bits (189), Expect = 4e-15
Identities = 57/185 (30%), Positives = 80/185 (43%), Gaps = 20/185 (10%)
Query: 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123
F G+ P+ AE DL + S + G + +G MVGA G +A+ +GRK L+I
Sbjct: 184 FVVGFVLPS-AE--KDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240
Query: 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS--------- 174
N SF + F RLL GFG+G V Y AE Q RG
Sbjct: 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFW 300
Query: 175 -LGSVNQLSVTIGIMLAYLLGL-------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRW 226
+G + ++ I+ Y F +WRV ++ PC I L F+PESPR+
Sbjct: 301 MIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRF 360
Query: 227 LAKMG 231
+ G
Sbjct: 361 FLENG 365
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 4/174 (2%)
Query: 52 VLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY 111
+L++ LG G G SP + DL L+ S+ + S ++G +G++ +G +++
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 112 IGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM 171
GR+ L++ + +G L+++F+ L +GR L G G G + IAE P
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 172 RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIP 221
RG + +G +L LLG + WR L ++ + LL L F+
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 68/313 (21%), Positives = 125/313 (39%), Gaps = 24/313 (7%)
Query: 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126
G+++P I ++ L + S +G GA+ G +A+ IGR+ L+ + +
Sbjct: 37 GFAAPA---ISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFS 93
Query: 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186
+ L+ + + + + L + R L G G+G + + ++E AP+ RG+ + IG
Sbjct: 94 VFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIG 153
Query: 187 IMLAYLLGLFV----NWRVL-AVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQ 241
+ L ++ WR L V G+ P LL+ + F+PES +L
Sbjct: 154 AAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR-------PET 206
Query: 242 VLRGFDTDISIEVNEIKRSVASSSRRTAIR---FAELKRKRYWFPLMIGIGLLVLQQLSG 298
V R + E + ++ + F L + + + + + LL L G
Sbjct: 207 VRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTAR-ITVLLWLLYFMLLVG 265
Query: 299 INGVLFYSSNIFANAGISSSNVATFGLGVVQVVATG--VNTWLMDKAGRRLLLLISSSGM 356
+ + + + G S S AT G G + WL D+ G R+ L+ +
Sbjct: 266 VYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL---L 322
Query: 357 AASFFLVSVAFFL 369
+ F V V L
Sbjct: 323 LGAVFAVLVGSTL 335
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 66/284 (23%), Positives = 119/284 (41%), Gaps = 43/284 (15%)
Query: 100 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII----SFSKDSSF----LFMGRLLEGFG 151
+GAI G + IGRK +L+I + IG L+I S++ + L + RL++GF
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCT 211
+G +Y+AE AP RG GS Q+ +G++LA L L +++ +L +L
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY-LLGDDALLEWG 168
Query: 212 LLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIR 271
IP L S++ VL G ++E + ++
Sbjct: 169 WRIPFLV-------------------SAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGP 209
Query: 272 FAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA------NAGISSSNV--ATF 323
AE K + P ++G+GL++ FY + G+S+++
Sbjct: 210 IAETLTK-HRKPFLLGLGLVIATT------TTFYLITTYLPTYLTQTLGLSANSALLVLM 262
Query: 324 GLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAF 367
++ + ++ L D+ GRR +L+I + A + +A
Sbjct: 263 LSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL 306
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 59/190 (31%), Positives = 84/190 (44%), Gaps = 47/190 (24%)
Query: 62 FGFTCGYSS----PTQAEIISDLKLTISEFSIFGSLANVGAM---VGAIASGQIAEYIGR 114
FGF + P E S L LT F++FG G + +GAI G + +GR
Sbjct: 34 FGFYATAIAKTFFPAGNEFAS-LMLT---FAVFG----AGFLMRPLGAIVLGAYIDRVGR 85
Query: 115 K------------GSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVY 162
+ G+L+IA VP G+ I + L GRLL+GF GV V VY
Sbjct: 86 RKGLIVTLSIMASGTLLIAFVP---GYATIGLAAPLLVLL-GRLLQGFSAGVELGGVSVY 141
Query: 163 IAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN------------WRVLAVLGVLPC 210
+AEIA +G S S + ++ A LLG +N WR+ ++G C
Sbjct: 142 LAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIG---C 198
Query: 211 TLLIPGLFFI 220
L++P +F I
Sbjct: 199 -LIVPFIFLI 207
|
Length = 434 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 51/303 (16%), Positives = 107/303 (35%), Gaps = 36/303 (11%)
Query: 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135
+ DL ++ +E + + ++G + +G++++ GR+ L+I + +G L++ F+
Sbjct: 23 LAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA 82
Query: 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195
L + R+L+G G G + IA+ P RG + +G L LLG
Sbjct: 83 SSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGG 142
Query: 196 FV----NWR-VLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI 250
+ WR +L +L + +P P
Sbjct: 143 LLASLFGWRAAFLILAILALLAAVLAALLLPRPPP------------------------- 177
Query: 251 SIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIF 310
E KR + + A R ++ LL + L +
Sbjct: 178 -----ESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVL 232
Query: 311 ANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLE 370
+ + + + G++ + + L D+ GRR LL++ + + +++ E
Sbjct: 233 GLSALLAGLLLGLA-GLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTE 291
Query: 371 GFV 373
+
Sbjct: 292 SSL 294
|
Length = 346 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 15/177 (8%)
Query: 79 DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS 138
+ L +++ S +G + GA+ G++A+ IGRK L+++ + G ++ ++
Sbjct: 44 EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA--LFGLFSLATAQAW 101
Query: 139 SF--LFMGRLLEGFGVGVISYTVPVYIA---EIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193
F L + RLL G G+G +P IA E +RG+ S+ V G LA ++
Sbjct: 102 DFPSLLVARLLTGVGLGG---ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI 158
Query: 194 GLF----VNWRVLAVLGVLPCTLLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRG 245
G+ WR + +G + LL+P L ++PES + G + L+ L G
Sbjct: 159 GVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFG 215
|
Length = 406 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 60/288 (20%), Positives = 111/288 (38%), Gaps = 22/288 (7%)
Query: 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133
AE+ + LT + + S A + GA+ G + GR+ ++ + V G L
Sbjct: 36 AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACG 95
Query: 134 FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193
F+ +F+ RL+ G G+G + Y+ E P+++R + +G ++A +
Sbjct: 96 FAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV 155
Query: 194 GLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD 247
V WR L + +LP + IPE ED++
Sbjct: 156 YSLVVPVWGDGWRALFFISILPIIFALWLRKNIPE----------AEDWKEKHAGKALVR 205
Query: 248 TDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS-GINGVLFYS 306
T + I + + +A+ A + KR+ + + + +L S I +
Sbjct: 206 TMVDI-LYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDL--LP 262
Query: 307 SNIFANAGISSSNVA--TFGLGVVQVVATGVNTWLMDKAGRRLLLLIS 352
+ + A+ G+S VA + +V V +L D GRR + S
Sbjct: 263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCS 310
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Query: 96 VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVI 155
+G ++ + SG + + GRK L++ ++ + + S + + L + R L+GFG
Sbjct: 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68
Query: 156 SYTVPVYIAEIAPQNMR----GSLGSVNQLSVTIGIMLAYLLGLFVNWRVL-AVLGVLPC 210
IA+I P R G + + L +G L +L F+ WR L +L
Sbjct: 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL 128
Query: 211 TLLIPGLFFIPES 223
I F +PE+
Sbjct: 129 AAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP-NIIGWLIISFSKDS 138
L L+ +E + SL +G ++GA+ G +++ +GR+ L++ + +G L+++ +
Sbjct: 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL 265
Query: 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG--LF 196
+ L + LL GFG+G + +E+AP RG+ + ++G L LL L
Sbjct: 266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL 325
Query: 197 VNWRVLAVLGVLPCTLLIPGLFF 219
V +L L+ L
Sbjct: 326 DTGGYGGVFLILAALALLAALLL 348
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 4/173 (2%)
Query: 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134
E+ + LT + + S A + G + G + + GR+ +++I+ V +G L F
Sbjct: 45 EVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGF 104
Query: 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194
+ LF+ RL+ G G+ + Y+ E P+++R +IG ++A +
Sbjct: 105 APGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY 164
Query: 195 LFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVL 243
V WR L +G+LP + +PE+ W K + + +L
Sbjct: 165 SLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDIL 217
|
Length = 496 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 8/148 (5%)
Query: 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134
I +DL ++ + +G +GA + + R+ L+ I+ L+ +
Sbjct: 38 PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL 97
Query: 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS-LGSVN---QLSVTIGIMLA 190
+ + L + R L G GV A + P RG L V L+ +G+ L
Sbjct: 98 APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG 157
Query: 191 YLLGLFVNWR----VLAVLGVLPCTLLI 214
LG WR +AVL +L LL
Sbjct: 158 TFLGQLFGWRATFLAIAVLALLALLLLW 185
|
Length = 394 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 4/155 (2%)
Query: 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135
I +DL LT E + + A +G G G +A+ GRK +M + V +G + +
Sbjct: 44 IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA 103
Query: 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG-IMLAYLLG 194
L + R + G G+ Y E P++++ + IG I+ AY +
Sbjct: 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMP 163
Query: 195 LFVN---WRVLAVLGVLPCTLLIPGLFFIPESPRW 226
F WR +G+LP L+I PES W
Sbjct: 164 SFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEW 198
|
Length = 426 |
| >gnl|CDD|225179 COG2270, COG2270, Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK 136
+DL L+ +E + G +V A +GAI +G + E G K LMI V I L + F +
Sbjct: 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE 339
Query: 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAP 168
++ LL G +G + Y+A + P
Sbjct: 340 GELDFWILGLLVGTSLGGAQASSRSYLARLVP 371
|
Length = 438 |
| >gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 86 EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM-G 144
FS GS+A ++G + ++ + GRK + ++G+LI F+ + L +
Sbjct: 258 LFSYMGSIAIGAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVL 317
Query: 145 RLLEGFGVGVISYTVPVYIAEI 166
+L GFG ++ V +A+
Sbjct: 318 IILAGFGQNFVTGLVWALVADT 339
|
The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family (TC 2.A.2) GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 437 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 413 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.98 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.98 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.98 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.97 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.97 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.97 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.97 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.97 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.97 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.97 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.97 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.97 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.97 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.97 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.97 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.96 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.96 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.96 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.96 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.96 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.96 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.96 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.96 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.96 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.96 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.96 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.96 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.96 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.96 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.96 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.96 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.95 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.95 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.95 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.95 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.95 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.95 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.95 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.95 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.95 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.95 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.95 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.95 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.95 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.95 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.95 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.94 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.94 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.94 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.94 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.94 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.94 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.94 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.93 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.93 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.93 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.93 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.93 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.93 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.92 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.92 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.92 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.92 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.92 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.92 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.91 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.91 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.9 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.9 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.89 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.89 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.89 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.89 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.88 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.88 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.88 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.88 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.87 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.86 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.86 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.84 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.83 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.83 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.82 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.81 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.79 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.76 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.74 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.74 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.74 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.73 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.73 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.7 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.69 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.68 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.67 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.65 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.63 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.61 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.6 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.6 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.59 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.59 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.58 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.58 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.57 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.56 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.55 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.55 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.55 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.54 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.53 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.52 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.52 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.51 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.5 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.48 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.48 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.46 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.45 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.45 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.44 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.44 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.43 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.43 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.43 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.42 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.41 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.41 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.4 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.4 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.39 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.39 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.38 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.37 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.36 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.35 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.34 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.34 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.33 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.33 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.33 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.32 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.32 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.31 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.3 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.28 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.26 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.25 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.25 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.24 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.22 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.22 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.21 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.21 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.21 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.21 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.2 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.2 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.2 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.19 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.18 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.16 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.15 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.15 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.14 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.13 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.13 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.12 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.12 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.11 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.11 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.11 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.11 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.1 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.1 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.08 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.06 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.06 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.05 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.05 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.04 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.04 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.03 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.02 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.02 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.02 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.01 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.01 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.01 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.0 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.99 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.98 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.96 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.96 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.93 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.92 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.91 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.9 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.86 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.85 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.8 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.77 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.77 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.76 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.75 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.73 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.73 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.71 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.67 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.64 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.64 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.62 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.6 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.58 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.56 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.5 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.48 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.45 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.45 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.39 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.39 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.36 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.34 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.32 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.28 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.21 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.18 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.15 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.13 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.09 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.08 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.03 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.9 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.79 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.79 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.77 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.74 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.63 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.56 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.56 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.45 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.43 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.27 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.19 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.18 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.12 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 96.94 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.92 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.79 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 96.65 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.5 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.45 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 96.42 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 95.85 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 95.85 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 95.78 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 95.68 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 95.65 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.61 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 95.57 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.19 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 94.97 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 94.75 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 94.19 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 92.96 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 92.77 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 92.37 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 91.29 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 89.21 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 88.54 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 85.12 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 84.26 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 81.45 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=294.90 Aligned_cols=363 Identities=34% Similarity=0.617 Sum_probs=305.9
Q ss_pred chhhhHHHHHHhHHHHhhhccccccchhhHHHh--------hhhc--cCcch----hHHHHHHHHHHHHHHHHhHHHHHh
Q 015068 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEII--------SDLK--LTISE----FSIFGSLANVGAMVGAIASGQIAE 110 (413)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~--~s~~~----~~~~~s~~~~~~~~~~~~~g~l~d 110 (413)
.++.........++.+..++..+..++..+.+. +.+| .++++ .+.+.+++.+|.++|+++.+.++|
T Consensus 6 t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~ 85 (485)
T KOG0569|consen 6 TRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLAD 85 (485)
T ss_pred cHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777999999999988766443 3345 33332 578899999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHH---hcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHH
Q 015068 111 YIGRKGSLMIAAVPNIIGWLIISF---SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGI 187 (413)
Q Consensus 111 r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 187 (413)
|+|||..+.++.++..++.++..+ .+++..++++|++.|+..|......+.++.|..|++.||....+.+.+..+|.
T Consensus 86 ~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ 165 (485)
T KOG0569|consen 86 RFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGI 165 (485)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHH
Confidence 999999999998888888777665 46899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccc------chHHHHHhhHHHHHHHHhhhccccCchHHHHH-cCChHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 015068 188 MLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK-MGMTEDFESSLQVLRGFDTDISIEVNEIKRS 260 (413)
Q Consensus 188 ~~~~~i~~~~------~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (413)
.++..++.-- .|++.+.+..+++++..+...++||+|||+.. +++.++|++.++++++.+++.....+..++.
T Consensus 166 ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~ 245 (485)
T KOG0569|consen 166 LLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREI 245 (485)
T ss_pred HHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 9997766322 69999999999999999999999999999987 8999999999999999875444433333333
Q ss_pred Hhh-cchhhhhhHHHHhhhc-chhHHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHH
Q 015068 261 VAS-SSRRTAIRFAELKRKR-YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVN 336 (413)
Q Consensus 261 ~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~ 336 (413)
.++ ..++++.+++++++++ .+++..+.+.+....++.+.+.+.+|...++++.|++... +.....++..++.++++
T Consensus 246 ~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~ 325 (485)
T KOG0569|consen 246 EEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVS 325 (485)
T ss_pred HHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2233666788998885 4556677778888899999999999999999999998775 88888899999999999
Q ss_pred HHHHhhcCCcHHHHHHhHHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHHHHHHHHHhccccccceeeecCC
Q 015068 337 TWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413 (413)
Q Consensus 337 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~E~ 413 (413)
.+++||.|||++++.+..++.+..+++.+.....+..+ .|..+.++.+.++|.++|++|++|++|.+.+|+
T Consensus 326 ~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~------~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aEL 396 (485)
T KOG0569|consen 326 PFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG------SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAEL 396 (485)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHh
Confidence 99999999999999999999999999998877765511 467788899999999999999999999999996
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=289.24 Aligned_cols=367 Identities=37% Similarity=0.606 Sum_probs=305.5
Q ss_pred CchhhhHHHHHHhHHHHhhhcc--ccccchhhHHHhhhhc-----cCc--chhHHHHHHHHHHHHHHHHhHHHHHhhhch
Q 015068 44 GSVSVVFCVLVVALGPIQFGFT--CGYSSPTQAEIISDLK-----LTI--SEFSIFGSLANVGAMVGAIASGQIAEYIGR 114 (413)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~-----~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr 114 (413)
..............+.+..+++ .+...+....++++.. .+. ++.+|+.+...++..+++++.|+++|++||
T Consensus 39 ~~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GR 118 (513)
T KOG0254|consen 39 ISPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGR 118 (513)
T ss_pred CceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3345556666677777777776 6677787777777432 222 345999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhh
Q 015068 115 KGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (413)
Q Consensus 115 r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 194 (413)
|+.++++.+++.++.+++++++|+.+++++|+++|+|.|......+.+++|..|++.||...+..+....+|..++..++
T Consensus 119 k~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~ 198 (513)
T KOG0254|consen 119 KKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCIN 198 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccc-----chHHHHHhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCC-CcchHHHHHHHHHH-Hhhc-ch
Q 015068 195 LFV-----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGF-DTDISIEVNEIKRS-VASS-SR 266 (413)
Q Consensus 195 ~~~-----~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~-~~ 266 (413)
... +||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.++++. +.+...+.+..+.. ..+. ..
T Consensus 199 ~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 278 (513)
T KOG0254|consen 199 YGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVA 278 (513)
T ss_pred hhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcc
Confidence 776 6999999999998888888888999999999999999999999999984 34444444444411 1111 11
Q ss_pred hhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCc-hhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015068 267 RTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSS-NVATFGLGVVQVVATGVNTWLMDKAGR 345 (413)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~ 345 (413)
+.+..+++++++...++..+...+..++++++.+...+|.+.+++..|.+.. .......++..+++..++.++.||+||
T Consensus 279 ~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gR 358 (513)
T KOG0254|consen 279 EGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGR 358 (513)
T ss_pred cccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1222466777766777888889999999999999999999999999988766 566777788888999999999999999
Q ss_pred cHHHHHHhHHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHHHHHHHHHhccccccceeeecCC
Q 015068 346 RLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413 (413)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~E~ 413 (413)
|+.++.+...+.+++++++........... ......++.+...+++...|+.++++++|++.+|+
T Consensus 359 r~lll~s~~~m~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEi 423 (513)
T KOG0254|consen 359 RKLLLFGAAGMSICLVILAVVGVFALYYPN---SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEI 423 (513)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccCCC---cccchhHHHHHHHHHHHHHHhcccccchhhhhhcc
Confidence 999999999999999999988776543111 12245677888889999999999999999999985
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=283.30 Aligned_cols=267 Identities=24% Similarity=0.276 Sum_probs=213.8
Q ss_pred chhhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHH
Q 015068 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (413)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 124 (413)
.+..|.++++++++.+..+++...++.++|.+.+++|++..+.+++.+++.++.+++++++|+++||+|||+++++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil 241 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV 241 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 45667777888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhcc--------
Q 015068 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-------- 196 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~-------- 196 (413)
.+++.++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.+++...++.+|.++++.++..
T Consensus 242 ~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~ 321 (742)
T TIGR01299 242 NGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS 321 (742)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 999999999999999999999999999999999999999999999999999999999999999888865421
Q ss_pred ---------cchHHHHHhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcch----HHH--HHHHHHHH
Q 015068 197 ---------VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI----SIE--VNEIKRSV 261 (413)
Q Consensus 197 ---------~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~ 261 (413)
.+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...+... ... ....+...
T Consensus 322 ~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~ 401 (742)
T TIGR01299 322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIH 401 (742)
T ss_pred hccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhh
Confidence 169999999888888777778889999999999999999999999987665321 110 01111100
Q ss_pred hh------c-chh----------------hhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhh
Q 015068 262 AS------S-SRR----------------TAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN 312 (413)
Q Consensus 262 ~~------~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (413)
.. + ... ....++++++++.++..++ ..+.++.....++.+..|.|.++++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~-l~~~wf~~~~~yygl~~w~P~~~~~ 474 (742)
T TIGR01299 402 QEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIK-LMGVWFTLSFGYYGLSVWFPDMIKH 474 (742)
T ss_pred hhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 000 0013555666655555544 4455555555688889999977543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=269.36 Aligned_cols=351 Identities=31% Similarity=0.487 Sum_probs=257.5
Q ss_pred hhhhHHHHHHhHHHHhhhccccccchhhHHHhhhh--------ccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHH
Q 015068 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDL--------KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117 (413)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~ 117 (413)
+.....+.+..++.+.++++.+.+++..|.+++++ +.+..+.+++.+++.++..++++++|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 34455666677788999999999999999998887 8888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh------------cChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHH
Q 015068 118 LMIAAVPNIIGWLIISFS------------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI 185 (413)
Q Consensus 118 l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 185 (413)
++.+.+++.++.++++++ +++..++++|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999999998888763 22467789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc------------ccchHHHHHhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHH
Q 015068 186 GIMLAYLLGL------------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIE 253 (413)
Q Consensus 186 g~~~~~~i~~------------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (413)
|..+++.++. ..+||+.|++.+++.++..+..+++||+|+++.++++.+++.+..++....+. ....
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 246 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL-ATQA 246 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh-HHHH
Confidence 9988877643 23899999988887777766677789999998888887777666666544321 1111
Q ss_pred HHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHH
Q 015068 254 VNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVV 331 (413)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~ 331 (413)
.++.++..+++ ....+..+. ..............+....+.+...++.|.+.++.|.+... ......++..++
T Consensus 247 ~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i 321 (479)
T PRK10077 247 LQEIKHSLDHG----RKTGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLT 321 (479)
T ss_pred HHHHHHHHHHh----hhhhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 11111111000 000011111 01111222222333444445566677888888888887554 555567788899
Q ss_pred HHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHHHHHHHHHhccccccceeeec
Q 015068 332 ATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMS 411 (413)
Q Consensus 332 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 411 (413)
+.++.++++||+|||+.++.+..+++++.+++......... ......+++++..+++.++.++.+.+.+
T Consensus 322 ~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (479)
T PRK10077 322 FTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-----------GIVALLSMLFYVAAFAMSWGPVCWVLLS 390 (479)
T ss_pred HHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcc-----------cHHHHHHHHHHHHHHhccccchhHHHhH
Confidence 99999999999999999999999988888877654322111 1233344556666777666777777776
Q ss_pred CC
Q 015068 412 EV 413 (413)
Q Consensus 412 E~ 413 (413)
|+
T Consensus 391 e~ 392 (479)
T PRK10077 391 EI 392 (479)
T ss_pred hh
Confidence 63
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=272.77 Aligned_cols=352 Identities=18% Similarity=0.204 Sum_probs=252.1
Q ss_pred hhhhHHHHHHhHHHHhhhccccccchhhHHHhhhh-----ccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHH
Q 015068 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDL-----KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120 (413)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~ 120 (413)
+..+.+++++.++.+.++++.+..+.+.|.+.+++ +.+..+.+++.+.+.++..+++++.|+++||+|||+++..
T Consensus 12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~ 91 (502)
T TIGR00887 12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 45566777888889999999999999999887753 3455677999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC------hhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhh
Q 015068 121 AAVPNIIGWLIISFSKD------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (413)
Q Consensus 121 ~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 194 (413)
+.++..++.++++++++ +..++++|+++|++.|...+....++.|++|+++|++++++.+....+|..+++.++
T Consensus 92 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~ 171 (502)
T TIGR00887 92 ELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA 171 (502)
T ss_pred HHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876 678999999999999999999999999999999999999999999999888887665
Q ss_pred cc---------------------------cchHHHHHhhHHHHHHHHhhhccccCchHHHHHcCChH-HHHHHHHHHhCC
Q 015068 195 LF---------------------------VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTE-DFESSLQVLRGF 246 (413)
Q Consensus 195 ~~---------------------------~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~ 246 (413)
.. .+||+++.+.+++.++..+..+++||+|+|+..+++++ ++.+.+.+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~ 251 (502)
T TIGR00887 172 LIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQV 251 (502)
T ss_pred HHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcc
Confidence 31 16999999888888887777888999999998887764 456556555432
Q ss_pred Ccc-hHHHHHHHHHHHhhcchhhhhhHHHHhhhc---chhHHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--h
Q 015068 247 DTD-ISIEVNEIKRSVASSSRRTAIRFAELKRKR---YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--V 320 (413)
Q Consensus 247 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~ 320 (413)
+.+ ..++.++.+ + +++..+.+++++++++ ..++..+.....++.....++....|.|.++++.|++... .
T Consensus 252 ~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~ 327 (502)
T TIGR00887 252 KIEAEPDEVEKAS---T-AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATN 327 (502)
T ss_pred ccccCcccccchh---c-cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccch
Confidence 211 111111110 0 1111223566776532 1222223222233322223345666788888888876431 0
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHH
Q 015068 321 ------------ATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSL 388 (413)
Q Consensus 321 ------------~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (413)
......++.+++.++.++++||+|||+.++.+..+++++++++++....... ... +
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~----------~~~--~ 395 (502)
T TIGR00887 328 NAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLST----------HGF--L 395 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcch----------hHH--H
Confidence 1223345666788899999999999999988888888777766654321100 011 1
Q ss_pred HHHHHHHHHHhccccccceeeecCC
Q 015068 389 VGLVTVVISFSLGVGAIPWVIMSEV 413 (413)
Q Consensus 389 ~~~~~~~~~~~~~~~~i~~~~~~E~ 413 (413)
...+++..+++.++.++.+.+++|+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~E~ 420 (502)
T TIGR00887 396 AIYVLAQFFANFGPNATTFIVPGEV 420 (502)
T ss_pred HHHHHHHHHHhcCCCchhhhhhhcc
Confidence 2222334445677788888888885
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-33 Score=262.21 Aligned_cols=364 Identities=34% Similarity=0.587 Sum_probs=264.4
Q ss_pred CchhhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccC--------cchhHHHHHHHHHHHHHHHHhHHHHHhhhchh
Q 015068 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLT--------ISEFSIFGSLANVGAMVGAIASGQIAEYIGRK 115 (413)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr 115 (413)
..++.+...+++.++.+..+++...+.+..+.+..+++.+ ..+.+++.+++.++..+++++.|+++||+|||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr 101 (481)
T TIGR00879 22 TYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRK 101 (481)
T ss_pred ccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhH
Confidence 4456666677777788888999999999999999888877 78999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---ChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHH
Q 015068 116 GSLMIAAVPNIIGWLIISFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL 192 (413)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 192 (413)
++++.+.++..++.+++.+.. +++.++++|+++|++.+...+....++.|++|+++|++++++.+.+..+|..+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 181 (481)
T TIGR00879 102 KSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYG 181 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999986654 44589999999999999999999999999999999999999999999999999999
Q ss_pred hh---cc----cchHHHHHhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHH---HHHHh
Q 015068 193 LG---LF----VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEI---KRSVA 262 (413)
Q Consensus 193 i~---~~----~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 262 (413)
++ .. .+||+.|++.++..++..+..+++||+|++...+++.++..+...+....+.......+.. +...+
T Consensus 182 ~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (481)
T TIGR00879 182 FGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRS 261 (481)
T ss_pred HHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 98 44 3899999997777666666777789999887777766665555554443322111111100 00000
Q ss_pred hcchhhhhhHHHHhhhc--chhHHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHH
Q 015068 263 SSSRRTAIRFAELKRKR--YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTW 338 (413)
Q Consensus 263 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~ 338 (413)
.+.+..+..+++.++.. ..++.++...+..+........+.++.+.+.++.|++... .......++.+++.++.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 341 (481)
T TIGR00879 262 IEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIF 341 (481)
T ss_pred HHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111111233333321 2344555555555555555667778888888888887744 5566677888999999999
Q ss_pred HHhhcCCcHHHHHHhHHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHHHHHHHHHhccccccceeeecC
Q 015068 339 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412 (413)
Q Consensus 339 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~E 412 (413)
+.||++||+.+..+..+++++++++.+....... +.+ .......+....++..+++.+..++.+.+.+|
T Consensus 342 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (481)
T TIGR00879 342 LVDRFGRRPLLLIGAAGMAICLFVLGILGASFVT-GSS----KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSE 410 (481)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccC-Ccc----cchhHHHHHHHHHHHHHHHccccCeehhhhhc
Confidence 9999999999998888877777776643222111 000 00122333444556677777777777776655
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=235.53 Aligned_cols=276 Identities=19% Similarity=0.238 Sum_probs=222.9
Q ss_pred hHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHH
Q 015068 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (413)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 128 (413)
+..++...++.|..+.+..+....+|++.+|+|+|..+.|+..|+|.++.+++.++...+.||+.||++++..+.++.++
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~ 91 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS 91 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 44556667777888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHH
Q 015068 129 WLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAV 204 (413)
Q Consensus 129 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~ 204 (413)
++++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|..++.++ |||+.|+
T Consensus 92 n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~ 171 (394)
T COG2814 92 NLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL 171 (394)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988887777666 9999999
Q ss_pred hhHHHHHHHHhh-hccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhH
Q 015068 205 LGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (413)
Q Consensus 205 ~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (413)
+.+..+++..+. +..+| |+. .+++...+..+..+.++++..+.
T Consensus 172 ~ia~l~ll~~~~~~~~lP--~~~----------------------------------~~~~~~~~~~~~~~~l~~p~v~~ 215 (394)
T COG2814 172 AIAVLALLALLLLWKLLP--PSE----------------------------------ISGSLPGPLRTLLRLLRRPGVLL 215 (394)
T ss_pred HHHHHHHHHHHHHHHhCC--Ccc----------------------------------CCCCCCcchhHHHHHhcCchHHH
Confidence 988888777664 55577 110 00011122223455566665555
Q ss_pred HHHHHHHHHHHHhcCchhHHhchHHHHh-hcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHH
Q 015068 284 LMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (413)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 360 (413)
.++...+.+. +.+....|...+++ ..|++... +....++++.++|..++|++.|| +.|+.+.....++++..
T Consensus 216 ~l~~t~l~~~----g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~ 290 (394)
T COG2814 216 GLLATFLFMT----GHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALAL 290 (394)
T ss_pred HHHHHHHHHc----chhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHH
Confidence 5444433333 33344444444455 45887766 77888899999999999999999 88888888877777777
Q ss_pred HHHHH
Q 015068 361 FLVSV 365 (413)
Q Consensus 361 ~~~~~ 365 (413)
+.+.+
T Consensus 291 l~l~~ 295 (394)
T COG2814 291 LALTF 295 (394)
T ss_pred HHHHH
Confidence 66554
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=255.31 Aligned_cols=290 Identities=24% Similarity=0.376 Sum_probs=225.2
Q ss_pred hhhHHHhhhhccC---cchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHH
Q 015068 71 PTQAEIISDLKLT---ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLL 147 (413)
Q Consensus 71 ~~~~~i~~~~~~s---~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 147 (413)
+..|.+.+|+|++ ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.+++++++|++.++++|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5677899999999 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-chHHHHHhhHHHHHHHHhhhccccCchHH
Q 015068 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-NWRVLAVLGVLPCTLLIPGLFFIPESPRW 226 (413)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-~w~~~~~~~~~~~~~~~~~~~~~~e~~~~ 226 (413)
.|++.+...+....++.|++|+++|+++.++...+..+|.++++.++..+ +||+.+++.+++.++..+..+++||+|+|
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~ 269 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRW 269 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 99999999999999999999999999999999999999999999998776 89999999888877777777789999999
Q ss_pred HHHcCChHHHHHHHHHHhCCCcchH-HHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhc
Q 015068 227 LAKMGMTEDFESSLQVLRGFDTDIS-IEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFY 305 (413)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (413)
+..+++.+++.+.+++....+.... .+....+...+..++.++..++++++++..+...+...+.++.....++....+
T Consensus 270 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (505)
T TIGR00898 270 LISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLD 349 (505)
T ss_pred HHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999988888777654332211 111111101111111123467788887766666555544444332222222222
Q ss_pred hHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHH
Q 015068 306 SSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (413)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 365 (413)
..+.+.+ ........++..+++.++.+++.||+|||+.+..+.++.+++++++..
T Consensus 350 ----~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~ 404 (505)
T TIGR00898 350 ----LGNLGGN-IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLF 404 (505)
T ss_pred ----ccccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 2222332 234455667888899999999999999999999888887777766553
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-31 Score=248.48 Aligned_cols=282 Identities=18% Similarity=0.231 Sum_probs=205.3
Q ss_pred HHHHHhHHHHhhhccccccchhhHHHhhhhccCcch-hHH-----HHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHH
Q 015068 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISE-FSI-----FGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (413)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~~-----~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 124 (413)
......++.+.+++|...++...|.+.++++.+.++ .++ +.++..+++.+++++.|+++||+|||+++..+.++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l 96 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 445667788899999999999999999998754432 222 25778899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcChhH--------HHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhh--
Q 015068 125 NIIGWLIISFSKDSSF--------LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG-- 194 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~-- 194 (413)
++++++++++++|+.. ++++|+++|++.|..++...+++.|++|+++||++.++...+..+|..+++.+.
T Consensus 97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~ 176 (490)
T PRK10642 97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL 176 (490)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 788999999999999999999999999999999999999988888877776443
Q ss_pred --c--------ccchHHHHHhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhc
Q 015068 195 --L--------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASS 264 (413)
Q Consensus 195 --~--------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (413)
. ..|||+.|++.+++.++..+....+||+|+|..++++.++..+ +..
T Consensus 177 ~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~-----------------------~~~ 233 (490)
T PRK10642 177 ISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR-----------------------EGL 233 (490)
T ss_pred HHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-----------------------ccc
Confidence 2 2389999999877666555566678999987543221111000 000
Q ss_pred chhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHh
Q 015068 265 SRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMD 341 (413)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d 341 (413)
.+.++.++++++++ .++......... +.....++.+..|.|.++++ .|++... .......++.+++.++.|+++|
T Consensus 234 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 311 (490)
T PRK10642 234 QDGPKVSFKEIATK-HWRSLLTCIGLV-IATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSD 311 (490)
T ss_pred cccccCCHHHHHHH-hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112234555543 222222222222 22223345566778888854 4776554 4445556778889999999999
Q ss_pred hcCCcHHHHHHhHHHH
Q 015068 342 KAGRRLLLLISSSGMA 357 (413)
Q Consensus 342 r~g~~~~~~~~~~~~~ 357 (413)
|+|||+.+..+.....
T Consensus 312 r~grr~~~~~~~~~~~ 327 (490)
T PRK10642 312 RFGRRPFVILGSVALF 327 (490)
T ss_pred HhccHHHHHHHHHHHH
Confidence 9999998877765444
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=241.63 Aligned_cols=290 Identities=14% Similarity=0.115 Sum_probs=210.1
Q ss_pred hHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHH
Q 015068 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (413)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 128 (413)
|.....+++..+.++++....+...|.+++|+|+|.++.|++.+++.+++++++++.|+++||+|||+++..+.++.+++
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 86 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA 86 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 44555566666778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhcc----------cc
Q 015068 129 WLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF----------VN 198 (413)
Q Consensus 129 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~----------~~ 198 (413)
.+++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+..+|..+++.+++. .|
T Consensus 87 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g 166 (412)
T TIGR02332 87 STATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKG 166 (412)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999998888753 38
Q ss_pred hHHHHHhhHHHHHHHHh-hhccccCchHHHHHcC-ChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHh
Q 015068 199 WRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMG-MTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELK 276 (413)
Q Consensus 199 w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (413)
||+.|++.++..++..+ ..+++||+|+.. +. ..++.+...+..+....+.++. ++..++.....+..+++++
T Consensus 167 wr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 240 (412)
T TIGR02332 167 WQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLTLEQP----EGAFAHAAMPQRSMLREIF 240 (412)
T ss_pred hhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhcccccccc----ccccccccccHHHHHHHhc
Confidence 99999998777665544 456678887421 00 0111111111111100000000 0000000001112233333
Q ss_pred hhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhhc--CCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHH
Q 015068 277 RKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA--GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLL 349 (413)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 349 (413)
+ + .++.....+++.......+..|.|.++++. +.++.. .......++.+++.++.|+++||+++|+..
T Consensus 241 ~-~----~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~ 312 (412)
T TIGR02332 241 T-P----AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHH 312 (412)
T ss_pred C-h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHH
Confidence 2 1 122333333344444566778999999875 444433 556677888999999999999999987753
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.4e-31 Score=227.87 Aligned_cols=289 Identities=18% Similarity=0.177 Sum_probs=222.2
Q ss_pred chhhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHH
Q 015068 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (413)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 124 (413)
++.++.+...+.+++...++.+..++.+.|.+.+|.++|.+|.|++.+++++.+.++.++.|.++||.+.|..+..++++
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil 103 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence 34556677788888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhh--ccc----c
Q 015068 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG--LFV----N 198 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~--~~~----~ 198 (413)
.++.+++++++++...+.+..++.|...|.-+|.+...+..|+++++||+..+++++..++|..+.|++. +.+ +
T Consensus 104 sai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~ 183 (448)
T COG2271 104 SAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG 183 (448)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998888877 544 8
Q ss_pred hHHHHHhhHHHHHHHHh-hhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHH-Hh
Q 015068 199 WRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAE-LK 276 (413)
Q Consensus 199 w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 276 (413)
||..|++.++++++..+ .++..+|+|+-. +.. ..++.+++. .+..+++++.+..+.++ ++
T Consensus 184 w~~~f~~pgiiaiival~~~~~~rd~Pqs~---GLP-----~ie~~~~d~----------~e~~~~~~~~~~ls~~~i~~ 245 (448)
T COG2271 184 WRAAFYFPGIIAIIVALILLFLLRDRPQSE---GLP-----PIEEYRGDP----------LEIYEEEKENEGLTAWQIFV 245 (448)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCcccc---CCC-----CHHHhhcCc----------hhhhhhhccCCCccHHHHHH
Confidence 99999999988777765 455578877521 100 000011100 00001111111122222 22
Q ss_pred hhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhhc-CCCCch--hHHHHHHHHHHHHHHHHHHHHhhc--CCcHHHHH
Q 015068 277 RKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKA--GRRLLLLI 351 (413)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~~ 351 (413)
+....++.++..++........-+.+..|.|.++.+. |++... .....+-.++++|+++.||++||+ |||..+.+
T Consensus 246 ~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~ 325 (448)
T COG2271 246 KYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMAL 325 (448)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHH
Confidence 2223334444444444444445678889999988875 776555 777778899999999999999996 56655443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.4e-30 Score=238.36 Aligned_cols=272 Identities=21% Similarity=0.212 Sum_probs=196.4
Q ss_pred hhHHHHHHhHHHHhhhccccccchhhHHHhhhhc---cCcchhHHHH---HHHHHHHHHHHHhHHHHHhhhchhHHHHHH
Q 015068 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLK---LTISEFSIFG---SLANVGAMVGAIASGQIAEYIGRKGSLMIA 121 (413)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~~~~~---s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~ 121 (413)
++..+....++.+.+++|...++...|.+.++++ .+..+.+... +..+++..++++++|+++||+|||+++..+
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~ 99 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS 99 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4445556667788899999999999999999985 4555444444 444555559999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcChh--------HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHh
Q 015068 122 AVPNIIGWLIISFSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193 (413)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i 193 (413)
.++++++++++++++++. .++++|+++|++.|..++...+++.|++|+++|+++.++...+...|..+++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~ 179 (432)
T PRK10406 100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV 179 (432)
T ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999874 588899999999999999999999999999999999999888888887777654
Q ss_pred hc------------ccchHHHHHhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 015068 194 GL------------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSV 261 (413)
Q Consensus 194 ~~------------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (413)
.. ..|||++|++.+++.++.......+||+|++..+ .
T Consensus 180 ~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~------------------------------~- 228 (432)
T PRK10406 180 VVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR------------------------------A- 228 (432)
T ss_pred HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh------------------------------h-
Confidence 32 2489999999888777665555557776542100 0
Q ss_pred hhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHH
Q 015068 262 ASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTW 338 (413)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~ 338 (413)
.++..+++++++++..+...+. ..+.....++.+..|.|.++++ .|.+..+ .......+...++..+.|+
T Consensus 229 ----~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~ 301 (432)
T PRK10406 229 ----LKEAGSLKGLWRNRRAFIMVLG---FTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGA 301 (432)
T ss_pred ----hcccccHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001234555554332222111 1121122244566778887765 5776554 4444556667788888999
Q ss_pred HHhhcCCcHHHHHHhHHHH
Q 015068 339 LMDKAGRRLLLLISSSGMA 357 (413)
Q Consensus 339 l~dr~g~~~~~~~~~~~~~ 357 (413)
++||++||+.+..+..+.+
T Consensus 302 l~Dr~grr~~~~~~~~~~~ 320 (432)
T PRK10406 302 LSDKIGRRTSMLCFGSLAA 320 (432)
T ss_pred HHHHcCchHHHHHHHHHHH
Confidence 9999999998776655433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.3e-30 Score=236.54 Aligned_cols=297 Identities=20% Similarity=0.206 Sum_probs=213.8
Q ss_pred hhhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHH
Q 015068 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (413)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 125 (413)
++.|.....+.++.+.++++....++..|.+++++|.+..+.+++.+++.++..+++++.|.++||+|||++++.+.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 87 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLF 87 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45566677778888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c--h
Q 015068 126 IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N--W 199 (413)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~--w 199 (413)
+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.+++.+ + |
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w 167 (405)
T TIGR00891 88 SAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW 167 (405)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 999999999999999999999999999999999999999999999999999999999999999998887654 4 9
Q ss_pred HHHHHhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhc
Q 015068 200 RVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKR 279 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (413)
|+.|++.++..++..+....+||++++..+++++++..+..++..+.+.. .+.. .++.....++.. +
T Consensus 168 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~~~~~--~ 234 (405)
T TIGR00891 168 RALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHR-------IANI----VMTLAAAMVQSA--G 234 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchh-------hhhh----hhhhhHHhhhhh--h
Confidence 99998877666665555666788766543322211111111111100000 0000 000000011100 1
Q ss_pred chhHHH-HHHHHHHHHHhcCchhHHhchHHHHh-hcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHH
Q 015068 280 YWFPLM-IGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSG 355 (413)
Q Consensus 280 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 355 (413)
..+... .......+.... ......+.|.+++ +.|++..+ .......++.+++.++.+++.||++||+.+..+...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~ 313 (405)
T TIGR00891 235 KRWPTFVYLVVLVLFANLY-SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLA 313 (405)
T ss_pred hhhHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHH
Confidence 111111 111111111111 2233344565554 45777655 555667888999999999999999999988877655
Q ss_pred H
Q 015068 356 M 356 (413)
Q Consensus 356 ~ 356 (413)
.
T Consensus 314 ~ 314 (405)
T TIGR00891 314 G 314 (405)
T ss_pred H
Confidence 4
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=243.89 Aligned_cols=313 Identities=13% Similarity=0.076 Sum_probs=225.4
Q ss_pred hhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHH
Q 015068 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (413)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 126 (413)
+.|..+..++++.+...+|.+..+..+|.+.+|+|.+.++.+|+.+.+.++.+++.++.|+++||+|||++++.+..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~ 82 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG 82 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34667788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcC-CCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHH
Q 015068 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRV 201 (413)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~ 201 (413)
++++++++++|++.++++|+++|+|.+...+.....+.+.+ |+++|++++++......+|..+||.+++.+ +|||
T Consensus 83 ~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~ 162 (495)
T PRK14995 83 LASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGS 162 (495)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH
Confidence 99999999999999999999999999999988888887776 678999999999999999999999998777 8999
Q ss_pred HHHhhHHHHHHHHh-hhccccCchHHHHHcCChHHHHHHHH---------HHh---CCCcchHHHHHH--------HHHH
Q 015068 202 LAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQ---------VLR---GFDTDISIEVNE--------IKRS 260 (413)
Q Consensus 202 ~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~--------~~~~ 260 (413)
.|++.....++..+ ..+++||+++. ++++.|....... .+. ....+....... ....
T Consensus 163 ~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~ 240 (495)
T PRK14995 163 VFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI 240 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence 99988766665544 44556775431 1111121111000 000 000000000000 0000
Q ss_pred HhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHH
Q 015068 261 VASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNT 337 (413)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g 337 (413)
..+.+.+.+....++++++......+....... ......++.|.++++ .|.++.+ ....+..++..++.++.|
T Consensus 241 ~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g 316 (495)
T PRK14995 241 RTQLAASRPMIDMRLFTHRIILSGVVMAMTAMI----TLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAG 316 (495)
T ss_pred HHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111112345555544433332222222 233455667777775 4887666 666777888999999999
Q ss_pred HHHhhcCCcHHHHHHhHHHHHHHHHHHH
Q 015068 338 WLMDKAGRRLLLLISSSGMAASFFLVSV 365 (413)
Q Consensus 338 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 365 (413)
++.||+|+|+.+..+..+..++.+++..
T Consensus 317 ~l~~r~g~~~~~~~g~~~~~~~~~~l~~ 344 (495)
T PRK14995 317 ILVSRLGLRLVATGGMALSALSFYGLAM 344 (495)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888777777665543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=236.05 Aligned_cols=289 Identities=18% Similarity=0.153 Sum_probs=214.6
Q ss_pred HHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHH
Q 015068 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (413)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 129 (413)
.....+.++.+.++++.....+..|.+++++|+|+.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~ 97 (426)
T PRK12307 18 NALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGT 97 (426)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 33456667777788888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHh
Q 015068 130 LIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVL 205 (413)
Q Consensus 130 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~ 205 (413)
++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|.++++.+...+ +||+.|++
T Consensus 98 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i 177 (426)
T PRK12307 98 GLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV 177 (426)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988776543 89999987
Q ss_pred hHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHH
Q 015068 206 GVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
..+..++........||++++..++.+. .+ + ..+.........++++++++..+...
T Consensus 178 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (426)
T PRK12307 178 GLLPVLLVIYIRARAPESKEWEEAKLSG------------KG-K----------HSQSAWSVFSLSMKGLFNRAQFPLTL 234 (426)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHhhhhc------------cc-c----------ccccchhhhhHHHHHHHhhchHHHHH
Confidence 6544333333333346654432211000 00 0 00000011112455666665544433
Q ss_pred HHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHH
Q 015068 286 IGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (413)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 362 (413)
......+ ........+..+.|.++++.|.++.. ......+++.++++++.+++.||++||+.+..+.....+..+.
T Consensus 235 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 312 (426)
T PRK12307 235 CVFIVLF-SIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFP 312 (426)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3222222 22222334556778888877876554 4556667889999999999999999999888777666554443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=233.23 Aligned_cols=284 Identities=20% Similarity=0.268 Sum_probs=216.1
Q ss_pred hhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHH
Q 015068 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (413)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 126 (413)
+.|....+.++..+.++++....++..|.+.+++|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG 91 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 56677778888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHH
Q 015068 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (413)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~ 202 (413)
++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+ +||+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 171 (406)
T PRK11551 92 LFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHI 171 (406)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998887544 89999
Q ss_pred HHhhHHHHHHHHh-hhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcch
Q 015068 203 AVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYW 281 (413)
Q Consensus 203 ~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (413)
|++.++..++..+ ...++||+|++..++++.++. +...+..++++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~ 219 (406)
T PRK11551 172 FYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR--------------------------------APVLRALFGEGRA 219 (406)
T ss_pred HHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh--------------------------------hhhHHHHhhhhhh
Confidence 9887765554443 455578887643221110000 0000111111110
Q ss_pred hHHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHH
Q 015068 282 FPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (413)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 359 (413)
+.... .....+......+....|.|.++++.|.++.+ .......++.++++++.|++.||++||+.+..+.....++
T Consensus 220 ~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 298 (406)
T PRK11551 220 TATLL-LWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILAS 298 (406)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 11111 11111111122344556778888888887655 6666677889999999999999999999888766665555
Q ss_pred HHHH
Q 015068 360 FFLV 363 (413)
Q Consensus 360 ~~~~ 363 (413)
++.+
T Consensus 299 ~~~~ 302 (406)
T PRK11551 299 LAAL 302 (406)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=227.98 Aligned_cols=262 Identities=13% Similarity=0.147 Sum_probs=194.2
Q ss_pred hHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh
Q 015068 56 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135 (413)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 135 (413)
.+..+..........+.+|.+.+|+|.|+++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++.++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 94 (390)
T PRK03545 15 ALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA 94 (390)
T ss_pred HHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333445567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHH
Q 015068 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCT 211 (413)
Q Consensus 136 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~ 211 (413)
+|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++.+ +||+.|++.++..+
T Consensus 95 ~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~ 174 (390)
T PRK03545 95 WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGAL 174 (390)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888655 99999999887766
Q ss_pred HHHhh-hccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHH
Q 015068 212 LLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (413)
Q Consensus 212 ~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (413)
+..+. ...+||+|+ +++ +..++.++.++++..+.......+
T Consensus 175 l~~~~~~~~~~~~~~-----~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 216 (390)
T PRK03545 175 ITLLLLIKLLPLLPS-----EHS---------------------------------GSLKSLPLLFRRPALVSLYLLTVV 216 (390)
T ss_pred HHHHHHHHhCCCCCC-----CCc---------------------------------chHHHHHHHHhCcHHHHHHHHHHH
Confidence 55443 334565432 000 001123345555544433332222
Q ss_pred HHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHH
Q 015068 291 LVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (413)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 360 (413)
..... .....+.+.++++ .|.++.. ......++++++++++.+++.||+++|+.. .+.....++.
T Consensus 217 ~~~~~----~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~ 284 (390)
T PRK03545 217 VVTAH----FTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCL 284 (390)
T ss_pred HHHHH----HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHH
Confidence 22211 2223344445554 4776655 555667788999999999999999987654 4444444433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-36 Score=283.78 Aligned_cols=351 Identities=38% Similarity=0.595 Sum_probs=267.3
Q ss_pred HhHHHHhhhccccccchhhHHHh--hhhccCc---------chhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHH
Q 015068 55 VALGPIQFGFTCGYSSPTQAEII--SDLKLTI---------SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123 (413)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~i~--~~~~~s~---------~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 123 (413)
+.++.+..+++...++...+... .+++.+. .+.++..+...+|..+|+++.|.++||+|||+.++.+.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 34555777888877776665544 2222222 346899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---ChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---
Q 015068 124 PNIIGWLIISFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--- 197 (413)
Q Consensus 124 ~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--- 197 (413)
+..++.++.++++ |++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|..++..++...
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 9999999999999999999999999999999999999999999999999988888776544
Q ss_pred -c---hHHHHHhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHH
Q 015068 198 -N---WRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFA 273 (413)
Q Consensus 198 -~---w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (413)
+ ||+.+++.++++++..+..+++||||+|+.++++++++++.++++++.+.+.++. ++..++.++. ++.+..++
T Consensus 165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 242 (451)
T PF00083_consen 165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEI-EEIKAEKKES-QESKASWR 242 (451)
T ss_pred cccccccccccccccccccccccccccccccceecccccccccccccccccccccccccc-cccccccccc-cccceeee
Confidence 4 9999999999888888888889999999999999999999998866553222211 1111111111 11115567
Q ss_pred HHhhhcc-hhHHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHH
Q 015068 274 ELKRKRY-WFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLIS 352 (413)
Q Consensus 274 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~ 352 (413)
++++++. +++..+...+..+....+.+.+.+|.+.++++.+.++........++...++.+++.++.||+|||+.++.+
T Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~ 322 (451)
T PF00083_consen 243 DLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIG 322 (451)
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7777644 455666666666666777778888888888888887664445555677778888888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHHHHHHHHHhccccccceeeecCC
Q 015068 353 SSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413 (413)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~E~ 413 (413)
...++++.+.++........ . + .+.....+....++..+++.+++++.+.+.+|+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~---~-~--~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~El 377 (451)
T PF00083_consen 323 LLLMAICSLILGIIFFLGVS---S-S--SWWSILSIVFLALFFAFFSLGWGPLPWIYTAEL 377 (451)
T ss_pred cccccccccccccccccccc---c-c--cccccccceeeeecccccccccccccccccccc
Confidence 98888887777611111111 0 0 112334445555667788999999999999985
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=229.68 Aligned_cols=277 Identities=19% Similarity=0.186 Sum_probs=193.4
Q ss_pred HHHHHhHHHHhhhccccccchhhHH-Hhhhh--ccCcchhHHHH-----HHHHHHHHHHHHhHHHHHhhhchhHHHHHHH
Q 015068 51 CVLVVALGPIQFGFTCGYSSPTQAE-IISDL--KLTISEFSIFG-----SLANVGAMVGAIASGQIAEYIGRKGSLMIAA 122 (413)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~s~~~~~~~~-----s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~ 122 (413)
......++.+.+++|...++...|. +.+++ +.++. .+++. ++.+++..+++++.|+++||+|||++++.+.
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~ 101 (438)
T PRK09952 23 AALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTV 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHH
Confidence 4566667888899999888887764 45555 66665 45553 3456677899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcChh--------HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhh
Q 015068 123 VPNIIGWLIISFSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (413)
Q Consensus 123 ~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 194 (413)
++++++++++++++|+. .++++|+++|++.|..++....++.|++|+++|++..+..+.+..+|..++..+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~ 181 (438)
T PRK09952 102 WMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLV 181 (438)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 5888999999999999999999999999999999999999999999988876543
Q ss_pred c------------ccchHHHHHhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHh
Q 015068 195 L------------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVA 262 (413)
Q Consensus 195 ~------------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (413)
. ..+||+.|++.++..++........||+|++..++++.++
T Consensus 182 ~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~--------------------------- 234 (438)
T PRK09952 182 SLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA--------------------------- 234 (438)
T ss_pred HHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc---------------------------
Confidence 2 2489999998887765554455557888765332211000
Q ss_pred hcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHh-hcCCCCch--hHHHHHHHHHHHHHHHHHHH
Q 015068 263 SSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWL 339 (413)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l 339 (413)
.+++....+.+++++..+.... ... +......+....|.+.+++ +.|++... ......++..+++.++.|++
T Consensus 235 --~~~~~~~~~~l~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l 309 (438)
T PRK09952 235 --AKKRIPVIEALLRHPGAFLKII--ALR-LCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWL 309 (438)
T ss_pred --ccccCCHHHHHHHchHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000001112233322221111 111 1112223345556666664 35776544 23334566777888999999
Q ss_pred HhhcCCcHHHHHHhHHHHHHH
Q 015068 340 MDKAGRRLLLLISSSGMAASF 360 (413)
Q Consensus 340 ~dr~g~~~~~~~~~~~~~~~~ 360 (413)
+||+|||+.+..+.++..++.
T Consensus 310 ~Dr~grr~~~~~~~~~~~~~~ 330 (438)
T PRK09952 310 ADRFGRRRVYITGALIGTLSA 330 (438)
T ss_pred HHHhCchHHHHHHHHHHHHHH
Confidence 999999998887766554443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=236.76 Aligned_cols=292 Identities=17% Similarity=0.093 Sum_probs=206.0
Q ss_pred hhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHH
Q 015068 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (413)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 127 (413)
.+.+..+..++.+...++...+++..|.+.+|+|++.++.|++.+++.+++++++++.|+++||+|||+++..+.++.++
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 106 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI 106 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence 45556666677777788899999999999999999999999999999999999999999999999999999988888887
Q ss_pred HHHHHHH-----hcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----
Q 015068 128 GWLIISF-----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----- 197 (413)
Q Consensus 128 ~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----- 197 (413)
+.++.+. ++|++.+++.|+++|++.+...+...+++.|++|+++||++++++..+.++|..+++.++..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~ 186 (467)
T PRK09556 107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF 186 (467)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence 7776665 589999999999999999999999999999999999999999999999999999988876432
Q ss_pred --chHHHHHhhHHHHHHHHh-hhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhh-HH
Q 015068 198 --NWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIR-FA 273 (413)
Q Consensus 198 --~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 273 (413)
+||..|.+.++..++..+ .+++.+++|+... ..++ ++. ..... ..+ ++..+.++...... .+
T Consensus 187 ~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~---~~~~-~~~---~~~~~---~~~----~~~~~~~~~~~~~~~~~ 252 (467)
T PRK09556 187 DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELG---WGKA-EEI---FGEPI---SEE----DKETESTDMTKWQIFVE 252 (467)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcC---CCCh-hhc---ccCcc---chh----hhccccccCcHHHHHHH
Confidence 588888877766655544 3444566654211 0000 000 00000 000 00000000000011 12
Q ss_pred HHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHH
Q 015068 274 ELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLL 350 (413)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 350 (413)
..++++..+... +..++..........|.|.++++ .|++..+ .......++.+++.++.|+++||++||+.+.
T Consensus 253 ~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~ 328 (467)
T PRK09556 253 YVLKNPVIWLLC----FANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALV 328 (467)
T ss_pred HHHcChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence 234444333322 22222222344567788888765 5887665 5555667889999999999999999998776
Q ss_pred HHhHHHH
Q 015068 351 ISSSGMA 357 (413)
Q Consensus 351 ~~~~~~~ 357 (413)
.......
T Consensus 329 ~~~~~~~ 335 (467)
T PRK09556 329 ACIALAL 335 (467)
T ss_pred HHHHHHH
Confidence 5544433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=226.24 Aligned_cols=297 Identities=20% Similarity=0.251 Sum_probs=209.7
Q ss_pred hHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHH
Q 015068 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (413)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 128 (413)
+.......+..+..+++.....+..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+.+..+.++..++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 95 (398)
T TIGR00895 16 WRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVF 95 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444555556666777777788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHH
Q 015068 129 WLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAV 204 (413)
Q Consensus 129 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~ 204 (413)
.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+ +||+.++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~ 175 (398)
T TIGR00895 96 TLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFY 175 (398)
T ss_pred HHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehh
Confidence 999999999999999999999999999999999999999999999999999999999999998888665 8999998
Q ss_pred hhHHHHHH-HHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhH
Q 015068 205 LGVLPCTL-LIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (413)
Q Consensus 205 ~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (413)
+.++..++ ..+...++||++++..++ +.++..+..++......+...+ +.++ .+...+..+...+.+++++..+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 251 (398)
T TIGR00895 176 VGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--ALPE-QKATQGTKRSVFKALFQGKTARI 251 (398)
T ss_pred hhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--cccc-cccccchhhHHHHHHhcchhHHH
Confidence 87644444 344556678887665444 2233222222221110000000 0000 00000111112222333332222
Q ss_pred HHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHH
Q 015068 284 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLL 350 (413)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 350 (413)
..... ...+...........+.|.+.++.|.++.. .......++.+++.++.+++.||+++|+...
T Consensus 252 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (398)
T TIGR00895 252 TVLLW-LLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL 319 (398)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 22222 222222233445566777777777887655 5566678889999999999999999984443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=219.83 Aligned_cols=245 Identities=18% Similarity=0.200 Sum_probs=184.8
Q ss_pred ccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHH
Q 015068 68 YSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLL 147 (413)
Q Consensus 68 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 147 (413)
...+.+|.+.+++|.|+++.++..+++.++..+++++.|+++||+|||++++.+.++.+++.+++++++|++.++++|++
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 117 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRAC 117 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhh-ccccC
Q 015068 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL-FFIPE 222 (413)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~-~~~~e 222 (413)
+|++.+...+...+++.|++|+++|+++.++...+.++|..++|.+++.+ +||+.|++.++..++..+.. ...||
T Consensus 118 ~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~ 197 (394)
T PRK10213 118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPS 197 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999998888765 89999998776655544332 33565
Q ss_pred chHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhH
Q 015068 223 SPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGV 302 (413)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (413)
+|+. ++ +.....++.++++..+...+...+.... ....
T Consensus 198 ~~~~------~~--------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~ 235 (394)
T PRK10213 198 LPGE------PS--------------------------------HQKQNTFRLLQRPGVMAGMIAIFMSFAG----QFAF 235 (394)
T ss_pred CCcc------cc--------------------------------cchhHHHHHhcCHHHHHHHHHHHHHHHH----HHHH
Confidence 4320 00 0001123344444433333322222221 1222
Q ss_pred Hhc-hHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHH
Q 015068 303 LFY-SSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSG 355 (413)
Q Consensus 303 ~~~-~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 355 (413)
..+ .|.+.++.|+++.. ......+++.+++.++.+++.||.+ |+.++.+..+
T Consensus 236 ~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~ 290 (394)
T PRK10213 236 FTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLV 290 (394)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHH
Confidence 333 46666667887665 5566677889999999999999954 4443333333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=228.76 Aligned_cols=271 Identities=15% Similarity=0.132 Sum_probs=197.7
Q ss_pred HHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHH
Q 015068 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (413)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 129 (413)
.......+..+...++...+++.+|.+.+++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~ 102 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIIN 102 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHH
Confidence 34444556666666777778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHh
Q 015068 130 LIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVL 205 (413)
Q Consensus 130 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~ 205 (413)
+++++++|++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+ +||+.|++
T Consensus 103 ~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~ 182 (434)
T PRK11663 103 ILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMI 182 (434)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998877655 99999998
Q ss_pred hHHHHHHHH-hhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHH-----Hhhhc
Q 015068 206 GVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAE-----LKRKR 279 (413)
Q Consensus 206 ~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 279 (413)
.++..++.. +..++++|+|++...+...++.. +. .+..+ + .++++.++++ .++++
T Consensus 183 ~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----------~~----~~~~~--~--~~~~~~~~~~~~~~~~~~~~ 243 (434)
T PRK11663 183 AGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH-----------DA----LELAQ--Q--QEGAGLSRKEILTKYVLLNP 243 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc-----------cc----cccch--h--ccccCCChhhhHHHHHhcCh
Confidence 777655443 34455788765321110000000 00 00000 0 0000011122 23333
Q ss_pred chhHHHHHHHHHHHHHhcCchhHHhchHHHHh-hcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhc
Q 015068 280 YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKA 343 (413)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~ 343 (413)
..+...+. .+........+..|.|.+++ +.|++..+ .......+++.+++++.|++.||+
T Consensus 244 ~~~~~~~~----~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~ 306 (434)
T PRK11663 244 YIWLLSFS----YVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL 306 (434)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 32222222 22222223456667788885 45887655 556667788999999999999998
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-28 Score=226.86 Aligned_cols=254 Identities=15% Similarity=0.165 Sum_probs=176.5
Q ss_pred hhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHH
Q 015068 62 FGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFL 141 (413)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l 141 (413)
..+......+..|.+.+++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.+
T Consensus 48 ~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l 127 (476)
T PLN00028 48 CFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGF 127 (476)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 33344556788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHH----HHhhc---------ccchHHHHHhhHH
Q 015068 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA----YLLGL---------FVNWRVLAVLGVL 208 (413)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~----~~i~~---------~~~w~~~~~~~~~ 208 (413)
+++|+++|++.+... ....++.|++|+++|++++++.+....+|..++ +.+.. ..+||+.|++.++
T Consensus 128 ~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~ 206 (476)
T PLN00028 128 IAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGL 206 (476)
T ss_pred HHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHH
Confidence 999999999887654 456688999999999999999876665555554 33321 1379999999887
Q ss_pred HHHHHHhhhcccc-CchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHH
Q 015068 209 PCTLLIPGLFFIP-ESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287 (413)
Q Consensus 209 ~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
+.++..+..++++ +.|+ ++.++.. ++.+.++.+....+++.++++..+...+.
T Consensus 207 l~l~~~l~~~~~~~~~p~-----~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (476)
T PLN00028 207 LHIIMGILVLTLGQDLPD-----GNYRELK---------------------KSGTMPKDSFSKVLRYGVTNYRTWILALT 260 (476)
T ss_pred HHHHHHHHHHHHcCcCCC-----CchhhHH---------------------hcCccccccHHHHHHHHHcCchhHHHHHH
Confidence 7766655544444 3332 0000000 00000000111223444444433322222
Q ss_pred HHHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 015068 288 IGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRR 346 (413)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~ 346 (413)
.. ........+..+.|.++.+ .|++... ......+++.++++++.|+++||++||
T Consensus 261 ~~----~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 261 YG----YSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred HH----HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 21 1111123345556666654 4887655 556667889999999999999999865
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-28 Score=204.49 Aligned_cols=349 Identities=17% Similarity=0.164 Sum_probs=253.5
Q ss_pred hhhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHH
Q 015068 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (413)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 125 (413)
+..|-..+.+..+...+.+......-+.|.+...+|.+..+..++......|..+++..+|.++|++|||+.+....+..
T Consensus 74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t 153 (528)
T KOG0253|consen 74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT 153 (528)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence 34455555566666555555555556667789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHH
Q 015068 126 IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRV 201 (413)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~ 201 (413)
.+..++.+.++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.+....++... ||||
T Consensus 154 ~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~ 231 (528)
T KOG0253|consen 154 GVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRY 231 (528)
T ss_pred HHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999 889999999999999998877777 88899988887776443 9999
Q ss_pred HHHhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcch--------------HHHHHHHHHHHhhcchh
Q 015068 202 LAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI--------------SIEVNEIKRSVASSSRR 267 (413)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 267 (413)
.......+..+.+...+++||+||++..+++++++.+.++++...|... ++|..+..+.+....++
T Consensus 232 ~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke 311 (528)
T KOG0253|consen 232 LLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKE 311 (528)
T ss_pred HHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccc
Confidence 9988888888888888999999999999999999999999887655321 11111111111122233
Q ss_pred hhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhhcC---C------------------CCch-hHHHHH
Q 015068 268 TAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAG---I------------------SSSN-VATFGL 325 (413)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~------------------~~~~-~~~~~~ 325 (413)
.......++..+.++..++.....+...+. ++........+++... . +..+ .-....
T Consensus 312 ~rg~~~nLlsp~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllit 390 (528)
T KOG0253|consen 312 VRGGTTNLLSPKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLIT 390 (528)
T ss_pred cccchHhhcChHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHH
Confidence 344566676665555555544444433333 3444444444443221 1 0111 334556
Q ss_pred HHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHHHHHHHHHhcccccc
Q 015068 326 GVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAI 405 (413)
Q Consensus 326 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 405 (413)
.+..+.|.++.++++||+|||+.+..++++.++..+++...... ......++..-++.+.+ ..+
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~r---------------n~~tvllf~arafisg~-fqv 454 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTR---------------NAYTVLLFTARAFISGA-FQV 454 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCc---------------chhHHHHHHHHHHHhch-heE
Confidence 78889999999999999999999999988888777776644211 11122233334444444 457
Q ss_pred ceeeecCC
Q 015068 406 PWVIMSEV 413 (413)
Q Consensus 406 ~~~~~~E~ 413 (413)
.|+|.+|+
T Consensus 455 aYvYtPEV 462 (528)
T KOG0253|consen 455 AYVYTPEV 462 (528)
T ss_pred EEEecCcc
Confidence 89999985
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-28 Score=225.17 Aligned_cols=270 Identities=23% Similarity=0.309 Sum_probs=189.8
Q ss_pred HHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHH-HHHHH-----HHHHHHHHhHHHHHhhhchhHHHHHHHHH
Q 015068 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIF-GSLAN-----VGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (413)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~-~s~~~-----~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 124 (413)
.....+++.+.+.+|...+++..|.+.+|++.++.+.+.. .+... ++..+++++.|+++||+|||++++.+.++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 5677788899999999999999999999999988776543 33332 22347899999999999999999999999
Q ss_pred HHHHHHHHHHhcChh--------HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhcc
Q 015068 125 NIIGWLIISFSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF 196 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 196 (413)
+.+++++++++++++ .++++|+++|++.+...+....++.|++|+++|++++++...+..+|..+++.++..
T Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~ 175 (434)
T PRK15075 96 MASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYL 175 (434)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 468899999999999999999999999999999999999888777766665554432
Q ss_pred ------------cchHHHHHhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhc
Q 015068 197 ------------VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASS 264 (413)
Q Consensus 197 ------------~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (413)
.|||++|++..+...+........||++++..++ +
T Consensus 176 l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~-------------------------------~-- 222 (434)
T PRK15075 176 LNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK-------------------------------H-- 222 (434)
T ss_pred HHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh-------------------------------h--
Confidence 3899999876544322222222234432210000 0
Q ss_pred chhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHh
Q 015068 265 SRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMD 341 (413)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d 341 (413)
+.+.+..++...+++ +.........+......+.+..|.|.++++ .|++..+ .......++.+++.++.|+++|
T Consensus 223 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~D 299 (434)
T PRK15075 223 RPSMREIFRSLAANW---RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSD 299 (434)
T ss_pred ccccccHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011111222211 111111222222233355677888988876 5887655 4555667888899999999999
Q ss_pred hcCCcHHHHHHhHHH
Q 015068 342 KAGRRLLLLISSSGM 356 (413)
Q Consensus 342 r~g~~~~~~~~~~~~ 356 (413)
|++||+.+..+....
T Consensus 300 r~g~r~~~~~~~~~~ 314 (434)
T PRK15075 300 RIGRRPVLIAFTVLA 314 (434)
T ss_pred HhcchHHHHHHHHHH
Confidence 999999887665443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=221.33 Aligned_cols=287 Identities=17% Similarity=0.167 Sum_probs=215.9
Q ss_pred chhhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHH
Q 015068 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (413)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 124 (413)
.++.+...+...+..+...++...+.|.+|.+.+++|.|..+.++..+.+.+++.+++++.|+++||+|||+++..+..+
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 87 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF 87 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 35667777777788888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chH
Q 015068 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWR 200 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~ 200 (413)
.+++.+++.++++++.+++.|+++|++.+...+...+++.|.+|+++|.+..++......+|..++|.+++.+ +||
T Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~ 167 (406)
T PRK15402 88 FILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWR 167 (406)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 9999999999999999999999999999988889999999999999999999998888888888888877654 899
Q ss_pred HHHHhhHHHHHHHHhh-hccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhc
Q 015068 201 VLAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKR 279 (413)
Q Consensus 201 ~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (413)
+.|++.++..++..+. .+..||+++.. + ++. ..++....++.+++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~----------------------------~~~~~~~~~~~~~~~~ 215 (406)
T PRK15402 168 GMFVLFAALAALSFFGLWRAMPETAGRV---G-EKL----------------------------SLKELGRDYKLVLKNR 215 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCccc---c-ccc----------------------------cHHHHHHHHHHHHcCc
Confidence 9998877766655543 34466653210 0 000 0001112344555555
Q ss_pred chhHHHHHHHHHHHHHhcCchhHHhchHHHHh-hcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHH
Q 015068 280 YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGM 356 (413)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 356 (413)
..+...+...+.... ......+.|.+++ +.|.++.+ .......++.+++.++.+++.||+++|+.+..+....
T Consensus 216 ~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~ 291 (406)
T PRK15402 216 RFVAGALALGLVSLP----LLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPM 291 (406)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 444333322222221 1223334555554 35776655 3344456678889999999999999999998888877
Q ss_pred HHHHHHHHHHH
Q 015068 357 AASFFLVSVAF 367 (413)
Q Consensus 357 ~~~~~~~~~~~ 367 (413)
.++.+++....
T Consensus 292 ~~g~~~~~~~~ 302 (406)
T PRK15402 292 VAGLLLAALAT 302 (406)
T ss_pred HHHHHHHHHHH
Confidence 77777766543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=216.10 Aligned_cols=255 Identities=15% Similarity=0.103 Sum_probs=186.7
Q ss_pred ccccccchhhHHHhh-hhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh-----cC
Q 015068 64 FTCGYSSPTQAEIIS-DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----KD 137 (413)
Q Consensus 64 ~~~~~~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~ 137 (413)
......+|+.+.+.+ |+|+|.+|.+++.+++.++++++.++.|++.||+|.|+++.++.++.++.++..+++ ++
T Consensus 48 ~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s 127 (462)
T PRK15034 48 CVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTP 127 (462)
T ss_pred HHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 344566777777766 899999999999999999999999999999999999999999999999999999987 89
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHH----HHhhc------------------
Q 015068 138 SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA----YLLGL------------------ 195 (413)
Q Consensus 138 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~----~~i~~------------------ 195 (413)
++.+++.|++.|++ +..++.....+++++|+++||+++|+.....++|..++ |.+..
T Consensus 128 ~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~ 206 (462)
T PRK15034 128 FGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGS 206 (462)
T ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 99999999999998 77889999999999999999999999966566665544 43221
Q ss_pred ccchHHHHHhhHHHHHHHHhhhc-cccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHH
Q 015068 196 FVNWRVLAVLGVLPCTLLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAE 274 (413)
Q Consensus 196 ~~~w~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (413)
..+||...++-+++.++..+..+ +.++.|. .+.......+
T Consensus 207 ~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---------------------------------------~~~~~~~~~~ 247 (462)
T PRK15034 207 VMSLANAAWIWVPLLAIATIAAWSGMNDIAS---------------------------------------SRASIADQLP 247 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---------------------------------------cccCHHHHHH
Confidence 11477777776665555554433 3443321 0111123344
Q ss_pred HhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHH
Q 015068 275 LKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLIS 352 (413)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~ 352 (413)
.+|++..|...+ .+++.+..+..+.++.|.+.++ .++... .......+...+.++++|+++||+|+++++.++
T Consensus 248 vlk~~~~Wllsl----ly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~ 322 (462)
T PRK15034 248 VLQRLHLWLLSL----LYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLIN 322 (462)
T ss_pred HhCCCchhHHHH----HHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHH
Confidence 555554443333 3344444456677777877765 333322 223344577888899999999999999999998
Q ss_pred hHHHHHHHHHH
Q 015068 353 SSGMAASFFLV 363 (413)
Q Consensus 353 ~~~~~~~~~~~ 363 (413)
+..+.++...+
T Consensus 323 ~i~~~i~~~~~ 333 (462)
T PRK15034 323 FIFMAIFSALL 333 (462)
T ss_pred HHHHHHHHHHH
Confidence 88777766443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=224.21 Aligned_cols=314 Identities=19% Similarity=0.202 Sum_probs=213.9
Q ss_pred hhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHH
Q 015068 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (413)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 127 (413)
.+.....++++.+.+.++.....+..|.+.+++|+|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 97 (496)
T PRK03893 18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSV 97 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 34455666677778888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHH
Q 015068 128 GWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLA 203 (413)
Q Consensus 128 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~ 203 (413)
+.+++++++|++.+++.|++.|++.+...+....++.|++|+++|+++.++...+..+|..+++.+++.+ +||+.|
T Consensus 98 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f 177 (496)
T PRK03893 98 GTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALF 177 (496)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998887655 899999
Q ss_pred HhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHH------HHHHhhcchhhhh-------
Q 015068 204 VLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEI------KRSVASSSRRTAI------- 270 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~------- 270 (413)
++.++..++..+.....||++++..++++.++..+..+.....+.......... .............
T Consensus 178 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (496)
T PRK03893 178 FIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLL 257 (496)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Confidence 876555444444445567776543322221111111111100000000000000 0000000000000
Q ss_pred ---hH--HHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHh-hcCCCCch--hHHHHHHHHHHHHHHHHHHHHhh
Q 015068 271 ---RF--AELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDK 342 (413)
Q Consensus 271 ---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr 342 (413)
.+ .........++.........+..+........+.|.+++ +.|++..+ .......++.+++.++.|++.||
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr 337 (496)
T PRK03893 258 CAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW 337 (496)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000001111122222222222222222335567788885 66887655 56666788899999999999999
Q ss_pred cCCcHHHHHHhHHHHHHHH
Q 015068 343 AGRRLLLLISSSGMAASFF 361 (413)
Q Consensus 343 ~g~~~~~~~~~~~~~~~~~ 361 (413)
++||+.+..+..+..+..+
T Consensus 338 ~g~~~~~~~~~~~~~~~~~ 356 (496)
T PRK03893 338 LGTRKAYVCSLLISQLLII 356 (496)
T ss_pred hcchHHHHHHHHHHHHHHH
Confidence 9999988877655554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=217.97 Aligned_cols=270 Identities=19% Similarity=0.209 Sum_probs=207.5
Q ss_pred HhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChh
Q 015068 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS 139 (413)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 139 (413)
+...++...+.|..|.+.+++|.|+.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++.++++++++++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 94 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIE 94 (385)
T ss_pred HHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH
Confidence 34456677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHh
Q 015068 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (413)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~ 215 (413)
.+.+.|++.|++.+...+...+++.|++|+++|++..++.+....+|..+++.+++.+ +||+.|++.++..++..+
T Consensus 95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (385)
T TIGR00710 95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSA 174 (385)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888765 899999887766555544
Q ss_pred h-hccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHH
Q 015068 216 G-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQ 294 (413)
Q Consensus 216 ~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (413)
. .+..||+++.. ++ + +.++....+++.++++..+...+...+...
T Consensus 175 ~~~~~~~~~~~~~---~~-~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 220 (385)
T TIGR00710 175 LIFFILPETLPYE---AR-I-----------------------------QISTYFETFLLLLKSKMFWGYALIYGASFG- 220 (385)
T ss_pred HHHHhCCCCCCCc---cc-C-----------------------------CHHHHHHHHHHHHcCchhHHHHHHHHHHHH-
Confidence 3 44466653210 00 0 000111223445555544443333222222
Q ss_pred HhcCchhHHhchHHHHh-hcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHH
Q 015068 295 QLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (413)
Q Consensus 295 ~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 366 (413)
.......+.|.+++ +.|.++.+ .......++.+++.++.+++.||+++|+.+..+..+..++.+++...
T Consensus 221 ---~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (385)
T TIGR00710 221 ---GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEIT 292 (385)
T ss_pred ---HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344455566665 45776655 55566678889999999999999999999888877777776666543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=234.68 Aligned_cols=307 Identities=17% Similarity=0.217 Sum_probs=220.8
Q ss_pred HHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHH
Q 015068 52 VLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI 131 (413)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 131 (413)
...+.++.+...++....++.+|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 44556677778888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhH
Q 015068 132 ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGV 207 (413)
Q Consensus 132 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~ 207 (413)
+++++|++.++++|+++|++.+...+...+++.|++|+++|+++.+++.....+|..++|.+++.+ +||+.|++.+
T Consensus 84 ~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~ 163 (485)
T TIGR00711 84 CGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINV 163 (485)
T ss_pred HhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999988766 8999999887
Q ss_pred HHHHHHHhh-hccccCchHHHHHcCChHHHHHHHH---------H-HhCCCcc--hHHHHH-HH--------HHHHhhcc
Q 015068 208 LPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQ---------V-LRGFDTD--ISIEVN-EI--------KRSVASSS 265 (413)
Q Consensus 208 ~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~--~~~~~~-~~--------~~~~~~~~ 265 (413)
...++..+. .++.||+++ .++++.|.....+. . ..+.+.+ ...+.. .. ....++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (485)
T TIGR00711 164 PIGIIVVVVAFFILPRDKP--AASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELT 241 (485)
T ss_pred HHHHHHHHHHHHHcCCccc--cccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHc
Confidence 766655443 344566433 11122222111000 0 0111100 000000 00 00000111
Q ss_pred hhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhh
Q 015068 266 RRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDK 342 (413)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr 342 (413)
.+++....++++++..+...+...+..+. .....++.|.++++ .|.++.+ .......++.+++.++.|++.||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r 317 (485)
T TIGR00711 242 DDNPLVDLRLFKYRNFTIGCVYMSLLGLG----LYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK 317 (485)
T ss_pred CCCCccCHHHHcCCChHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11111123455555544443333333322 33445667777765 4777655 56666788899999999999999
Q ss_pred cCCcHHHHHHhHHHHHHHHHHH
Q 015068 343 AGRRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 343 ~g~~~~~~~~~~~~~~~~~~~~ 364 (413)
++||+.+..+..+.+++..++.
T Consensus 318 ~~~~~~~~~g~~~~~~~~~~~~ 339 (485)
T TIGR00711 318 IDPRKLVTIGLILYAVGFYWRA 339 (485)
T ss_pred cCcHHHHHHHHHHHHHHHHHHh
Confidence 9999998888877777776655
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=217.91 Aligned_cols=272 Identities=14% Similarity=0.134 Sum_probs=198.5
Q ss_pred hHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHH
Q 015068 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (413)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 128 (413)
|.+....+.+.+... .....++.+|.+++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+.+++
T Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~ 87 (393)
T PRK09705 9 FMLLVLVLIGLNMRP-LLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVG 87 (393)
T ss_pred HHHHHHHHHHHHcch-hhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHH
Confidence 344444444433322 2366779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHH
Q 015068 129 WLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLA 203 (413)
Q Consensus 129 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~ 203 (413)
.+++++++|++.++++|+++|++.+...+....++.|++| ++|+++++++..+...|..+++.++..+ +||+.+
T Consensus 88 ~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~ 166 (393)
T PRK09705 88 ALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTL 166 (393)
T ss_pred HHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999997 7899999999887777777777666543 799887
Q ss_pred HhhHHHHHHHHhhhccc-cCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchh
Q 015068 204 VLGVLPCTLLIPGLFFI-PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWF 282 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (413)
.+.++..++..+..+.. ++.|+ ++ ++++ ...++.++++..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~--------~~--------------------------~~~~----~~~~~~l~~~~~~ 208 (393)
T PRK09705 167 AWWALPAVVALFAWWWQSAREVA--------SS--------------------------HKTT----TTPVRVVFTPRAW 208 (393)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc--------cc--------------------------cCCC----cCCcccccCHhHH
Confidence 76555444333322222 12111 00 0000 0011222222222
Q ss_pred HHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHH
Q 015068 283 PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (413)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 360 (413)
...+ ..+.....+.....|.|.++++.|.+..+ ......+++.+++++..+++.||++||+....+..+..++.
T Consensus 209 ~l~~----~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 209 TLGV----YFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 2222 11122223445667788888888887665 66777889999999999999999999999888877766665
Q ss_pred HHHH
Q 015068 361 FLVS 364 (413)
Q Consensus 361 ~~~~ 364 (413)
.++.
T Consensus 285 ~~~~ 288 (393)
T PRK09705 285 CGFI 288 (393)
T ss_pred HHHH
Confidence 5443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=219.54 Aligned_cols=268 Identities=16% Similarity=0.204 Sum_probs=201.2
Q ss_pred HhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 015068 55 VALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134 (413)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 134 (413)
..+..+..++......+.+|.+++|+|.+.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~ 87 (382)
T PRK10091 8 LALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL 87 (382)
T ss_pred HHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHH
Q 015068 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (413)
Q Consensus 135 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~ 210 (413)
++|++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++.+++.+ +||+.|++.++..
T Consensus 88 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~ 167 (382)
T PRK10091 88 SSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFN 167 (382)
T ss_pred hCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHH
Confidence 999999999999999999998888899999999999999999999999999998888877655 8999999887766
Q ss_pred HHHHh-hhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHH
Q 015068 211 TLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIG 289 (413)
Q Consensus 211 ~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (413)
++..+ ..+.+||.++ + ++++ .+..+ +.++++..+.......
T Consensus 168 ~~~~~~~~~~lp~~~~----~-~~~~--------------------------------~~~~~-~~~~~~~~~~~~~~~~ 209 (382)
T PRK10091 168 IAVLASIYFWVPDIRD----E-AKGG--------------------------------LREQF-HFLRSPAPWLIFAATM 209 (382)
T ss_pred HHHHHHHHHhCCCCCc----c-cccC--------------------------------HHHHH-HHhcChHHHHHHHHHH
Confidence 55544 3445676532 0 0000 00001 1122222222211111
Q ss_pred HHHHHHhcCchhHHhchHHHHh-hcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Q 015068 290 LLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 364 (413)
+... .......+.+.+++ ..|.++.. ......+++.++++++.+++.||+++|+.+..+..+.+++.+++.
T Consensus 210 ---~~~~-~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~ 283 (382)
T PRK10091 210 ---FGNA-GVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLF 283 (382)
T ss_pred ---HHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHH
Confidence 1111 11122233344444 45877655 556677888999999999999999999998888877777665543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-28 Score=218.03 Aligned_cols=241 Identities=14% Similarity=0.085 Sum_probs=173.6
Q ss_pred cccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHH
Q 015068 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRL 146 (413)
Q Consensus 67 ~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 146 (413)
..+++.+|.+++|+|+|+++.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......+|+..++++|+
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~ 87 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQL 87 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999877665555554433334479999999999
Q ss_pred HHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHh-hhcccc
Q 015068 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIP 221 (413)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~-~~~~~~ 221 (413)
++|++.+. .+.....++|++|+++|++++++.+.+..+|..++++++..+ +||+.|++.+++.++..+ ..+++|
T Consensus 88 l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 88 LAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999986 456666779999999999999999999999999998888776 999999987666655544 556689
Q ss_pred CchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchh
Q 015068 222 ESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 301 (413)
Q Consensus 222 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (413)
|+|++.. +.. + . + +....++++++++..+...+. .++.....+.
T Consensus 167 ~~p~~~~---~~~--------------~----~---~--------~~~~~~~~ll~~~~~~~~~~~----~~~~~~~~~~ 210 (368)
T TIGR00903 167 ALPFQAA---EGF--------------G----F---K--------DAVKEFGALAGRKDLWIIGAI----LGFGVALFDN 210 (368)
T ss_pred CCCCCCC---CCc--------------c----h---H--------HHHHHHHHHHcChhHHHHHHH----HHHHHHHHHH
Confidence 8875310 000 0 0 0 001135566666554443333 3333334567
Q ss_pred HHhchHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 015068 302 VLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRR 346 (413)
Q Consensus 302 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 346 (413)
+..|.|.++++.|++... .....+....+.+..++++||..||
T Consensus 211 ~~~wlp~~L~~~g~s~~~--~~~~~l~~~~g~~g~~~~~d~~~r~ 253 (368)
T TIGR00903 211 LAIWLEAALRPAGLEDIA--GDAVALAILAGLIGVAVIPDRVARA 253 (368)
T ss_pred HHHHHHHHHHHCCCChHH--HHHHHHHHHHHHHHHHHhhHHhhhh
Confidence 778999999887776432 2222333344444557888887653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-27 Score=215.53 Aligned_cols=278 Identities=17% Similarity=0.192 Sum_probs=202.0
Q ss_pred HHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHH
Q 015068 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL 130 (413)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 130 (413)
......+..+...++...+.|.+|.+.+++|.+.++.++..+++.+++++++++.|+++||+|||++++.+.++++++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~ 96 (413)
T PRK15403 17 FPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACA 96 (413)
T ss_pred HHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHH
Confidence 33444555666778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhh
Q 015068 131 IISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLG 206 (413)
Q Consensus 131 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~ 206 (413)
++++++|++.++++|+++|++.+...+....++.|++++++|++++++......+|..+||.+++.+ +||+.|++.
T Consensus 97 ~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~ 176 (413)
T PRK15403 97 ATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAII 176 (413)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999998877777788899999999999999999999999999999888755 899999988
Q ss_pred HHHHHHHHhh-hccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHH
Q 015068 207 VLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (413)
Q Consensus 207 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
++..++..+. .+.+||+++. +++.. ........++++++++..+...
T Consensus 177 ~~~~~i~~~~~~~~lp~~~~~---~~~~~-----------------------------~~~~~~~~~~~ll~~~~~~~~~ 224 (413)
T PRK15403 177 AVMGLIAFVGLLLAMPETVKR---GAVPF-----------------------------SAKSVLRDFRNVFRNRLFLTGA 224 (413)
T ss_pred HHHHHHHHHHHHHhCCCCccc---cCCCC-----------------------------ChHHHHHHHHHHHcCHHHHHHH
Confidence 8776666553 4457876430 00000 0001122345566665544433
Q ss_pred HHHHHHHHHHhcCchhHHhchHHHHhhc-CCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHH
Q 015068 286 IGIGLLVLQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (413)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 362 (413)
+...+... .......+.|.++++. |.++.+ +.......+..++..+.+.+.+|..+++.......+..++.++
T Consensus 225 l~~~~~~~----~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l 300 (413)
T PRK15403 225 ATLSLSYI----PMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLAL 300 (413)
T ss_pred HHHHHHHH----HHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence 33322222 2334455667777765 777665 4444456666777777777665544444443333344444444
Q ss_pred HH
Q 015068 363 VS 364 (413)
Q Consensus 363 ~~ 364 (413)
+.
T Consensus 301 ~~ 302 (413)
T PRK15403 301 LI 302 (413)
T ss_pred HH
Confidence 43
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=219.50 Aligned_cols=263 Identities=15% Similarity=0.075 Sum_probs=194.0
Q ss_pred ccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHH
Q 015068 66 CGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (413)
Q Consensus 66 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 145 (413)
.....+..|.+.+++|+|.++.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY 98 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhh-hccc
Q 015068 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFI 220 (413)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~-~~~~ 220 (413)
++.|++.+...+.....+.|++| ++|+++.++...+.++|..+++.+...+ +||+.|++.++..++..+. .+++
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhe
Confidence 99999999888888888999887 6799999999999999887654444332 8999999888776666554 3445
Q ss_pred cCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCch
Q 015068 221 PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300 (413)
Q Consensus 221 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (413)
+++|+.. +++ ++ +.++++...++.++++..+..........+. ..
T Consensus 178 ~~~~~~~-~~~-~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 222 (377)
T TIGR00890 178 GYPPGQL-IKT-NI-----------------------------EVSVKDYTVWEMLRTPQFWVLYLSFFLNAVS----GL 222 (377)
T ss_pred ecCchhc-ccc-Cc-----------------------------ccchhhhhHHHHHcCccHHHHHHHHHHHhHH----HH
Confidence 5443210 000 00 0000111233445554444333322222111 12
Q ss_pred hHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Q 015068 301 GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 301 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 364 (413)
....+.+.+.++.+.++.+ .......++.+++++..+++.||++||+.+..+.....++.+.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 288 (377)
T TIGR00890 223 LLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAML 288 (377)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 2333445556667776544 556667888899999999999999999998888877777766554
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=214.24 Aligned_cols=270 Identities=13% Similarity=0.089 Sum_probs=198.5
Q ss_pred HHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 015068 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII 132 (413)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 132 (413)
...+++.+..+......++.+|.+.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||++++.+.++.+++.+++
T Consensus 10 ~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~ 89 (394)
T PRK03699 10 WISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGL 89 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhcc-----cchHHHHHhhH
Q 015068 133 SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-----VNWRVLAVLGV 207 (413)
Q Consensus 133 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~-----~~w~~~~~~~~ 207 (413)
+++++++.++++|+++|++.+...+....++.|++|+++|+++++..+....+|..++|.+.+. .+||+.|.+.+
T Consensus 90 ~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~ 169 (394)
T PRK03699 90 MFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIG 169 (394)
T ss_pred HHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888888888887776543 38999999877
Q ss_pred HHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHH
Q 015068 208 LPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287 (413)
Q Consensus 208 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
+..++..+..++ .+.|+. ++++. ++.++.. ++.+ ++.++.
T Consensus 170 ~~~~~~~~~~~~-~~~p~~--~~~~~----------------------------~~~~~~~----~~~~-----~~~~~~ 209 (394)
T PRK03699 170 LVYVAIFILTLF-SEFPAL--GKHAP----------------------------KADKPVA----KEKW-----GIGVLF 209 (394)
T ss_pred HHHHHHHHHHHh-cCCccc--cccCc----------------------------cccCccc----cccC-----ChHHHH
Confidence 666555443332 222210 00000 0000000 0000 111112
Q ss_pred HHHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHH
Q 015068 288 IGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (413)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 362 (413)
..+..+........+..|.|.++++ .|++..+ .......++..+++++.++++||+++|+.+.....+..+.+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~ 287 (394)
T PRK03699 210 LAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYL 287 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 2222222222344566788888865 5887655 5556667888999999999999999999887766655544433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=219.54 Aligned_cols=270 Identities=17% Similarity=0.135 Sum_probs=197.2
Q ss_pred hhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhH
Q 015068 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF 140 (413)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 140 (413)
...++...++...|.+.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++..++++++|++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (399)
T TIGR00893 5 INYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVS 84 (399)
T ss_pred HHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHH
Confidence 34456677778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhh
Q 015068 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (413)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~ 216 (413)
++++|++.|++.+...+....++.|++|+++|++.+++.+....+|..+++.+++.+ +||+.|++.++..++..+.
T Consensus 85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (399)
T TIGR00893 85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVL 164 (399)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888764 8999999887776665554
Q ss_pred -hccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHH
Q 015068 217 -LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQ 295 (413)
Q Consensus 217 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (413)
.+..||+|+.... .++++.....+.... +...+++++..+...++.++++..+...+. .+..
T Consensus 165 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 227 (399)
T TIGR00893 165 WLKFIPDPPQKAKW-LTEEEKYIVVGGLLA------------EQQGKGPSTPKKYQIKELLKDRRVWGLALG----QFLV 227 (399)
T ss_pred hhheecCCCCcccc-CCHHHHhhcchhhcc------------ccccccccCCCccchHHHhcCHHHHHHHHH----HHHH
Confidence 3445665431100 001100000000000 000011111222344555555443333222 2222
Q ss_pred hcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcH
Q 015068 296 LSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRL 347 (413)
Q Consensus 296 ~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 347 (413)
.........+.+.++++ .|.++.+ .......++.+++.++.+++.||++||+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 228 NIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 22344556667777654 4766544 5566678888999999999999999986
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=215.44 Aligned_cols=276 Identities=14% Similarity=0.108 Sum_probs=206.4
Q ss_pred CchhhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHH
Q 015068 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123 (413)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 123 (413)
.....+..+.+.++.+.++..+...+.-+.+.+++.+|++++..|++.+.+.+++.+++|+.|+++||+.||+++.+|..
T Consensus 27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~ 106 (493)
T KOG1330|consen 27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIF 106 (493)
T ss_pred ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHH
Confidence 33455666777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----c
Q 015068 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----N 198 (413)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~ 198 (413)
++.++.++++++..||+++++|.+.|+|.+...++.+++++|.+|.++|++.+++++.+..+|..+|.+.+..+ .
T Consensus 107 iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~ 186 (493)
T KOG1330|consen 107 IWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW 186 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888766 4
Q ss_pred hHHHHHhhHHHHHHHHhhh-ccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhh
Q 015068 199 WRVLAVLGVLPCTLLIPGL-FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKR 277 (413)
Q Consensus 199 w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (413)
|||.|+..++++++..++. ++.+|++|- ..++. ++.+ ..........++.+.+.+
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~-------~~~~------------~~~~~~ts~~kDl~~l~~ 242 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEV-------DGEN------------KMVKPFTSVWKDLKVLAK 242 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCcccc-----ccccc-------ccCC------------cCCCCccchHHHHHHHHc
Confidence 9999999998888776654 445665331 11110 0000 000111122233344444
Q ss_pred hcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhc
Q 015068 278 KRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKA 343 (413)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~ 343 (413)
.+......+......+...+....-+.+.+...+-.|.+... +...+...++.+|.+++|.++||+
T Consensus 243 ~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~ 310 (493)
T KOG1330|consen 243 IKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKL 310 (493)
T ss_pred cCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHH
Confidence 344333334343444333222222233333333333544333 666667788899999999999994
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-27 Score=223.85 Aligned_cols=304 Identities=19% Similarity=0.211 Sum_probs=222.9
Q ss_pred hHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh
Q 015068 56 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135 (413)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 135 (413)
+.............++..+ .+.+..+.....+..+++.+|..+|++++|+++||+|||++++.++++..++.++.+++
T Consensus 91 ~~~~~~~~~~~~~~s~~~~--~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a 168 (521)
T KOG0255|consen 91 CLDGWVYDYGSSVYSIVSE--WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA 168 (521)
T ss_pred ccceeEecCCCCcccccch--hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333334444444433 45567788889999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc--chHHHHHhhHHHHHHH
Q 015068 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLL 213 (413)
Q Consensus 136 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--~w~~~~~~~~~~~~~~ 213 (413)
+|++.+++.|++.|++.+.....+..++.|++++++|+.+..+ ......++.+++..++++ +||+.+++..++.++.
T Consensus 169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~ 247 (521)
T KOG0255|consen 169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLF 247 (521)
T ss_pred CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 666666666666666655 8999999999988888
Q ss_pred HhhhccccCchHHHHHcCChHHHHHHHHHHhCCC---cchHHHHHHH--HHHHhhcchhhhhhHHHHhhhcchhHHHHHH
Q 015068 214 IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD---TDISIEVNEI--KRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (413)
Q Consensus 214 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (413)
++.+++.||+|||+..+++.+++.+.+++..+.| .+........ .+..+....+++..+.++++.+..+...+..
T Consensus 248 ~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ 327 (521)
T KOG0255|consen 248 LLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYL 327 (521)
T ss_pred HHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHH
Confidence 7777777899999999999999999998886543 1221111111 1111111222334577787776555554444
Q ss_pred HHHHHHHhcCchhHHhchHHHHhhcCCCCc-hhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHHH
Q 015068 289 GLLVLQQLSGINGVLFYSSNIFANAGISSS-NVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAF 367 (413)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 367 (413)
.+.++.. .+.++.-. +...+++.. .......+.....+....+...|+.|||..+..+..+..++++..++..
T Consensus 328 ~~~~~~~-----~~~y~gl~-~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~ 401 (521)
T KOG0255|consen 328 LFIWFVF-----SLVYYGLS-LNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLP 401 (521)
T ss_pred HHHHHHH-----hHHHHhhh-hhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444322 22222111 111122222 2444555557778888888999999999999999999999988888764
Q ss_pred H
Q 015068 368 F 368 (413)
Q Consensus 368 ~ 368 (413)
.
T Consensus 402 ~ 402 (521)
T KOG0255|consen 402 D 402 (521)
T ss_pred c
Confidence 3
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=214.74 Aligned_cols=275 Identities=12% Similarity=0.130 Sum_probs=196.2
Q ss_pred HHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHH
Q 015068 52 VLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI 131 (413)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 131 (413)
+....+..+..++......+..|.+++++|+|+.+.++..+.+.+++.+++++.|++.||+|||+++..+..+++++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l 107 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 34444555667777788888999999999999999999999999999999999999999999999999999999999988
Q ss_pred H---HHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhcc------------
Q 015068 132 I---SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF------------ 196 (413)
Q Consensus 132 ~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~------------ 196 (413)
+ ..+++++.++++|+++|+|.|...+....++.|..++++|.+.+++.+..+.+|..+++.++..
T Consensus 108 ~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~ 187 (438)
T PRK10133 108 FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD 187 (438)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchh
Confidence 5 4688999999999999999999999999999998777777778899999999998888877531
Q ss_pred ------------------cchHHHHHhhH-HHHHHHHhh-hccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHH
Q 015068 197 ------------------VNWRVLAVLGV-LPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNE 256 (413)
Q Consensus 197 ------------------~~w~~~~~~~~-~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (413)
.+||++|+... +..++..+. ....||.+. +++.
T Consensus 188 ~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~~----------------------- 240 (438)
T PRK10133 188 VLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNHS----------------------- 240 (438)
T ss_pred hhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----cccc-----------------------
Confidence 14566665333 333232222 223444211 0000
Q ss_pred HHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHH-Hhh-cCCCCch--hHHHHHHHHHHHH
Q 015068 257 IKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNI-FAN-AGISSSN--VATFGLGVVQVVA 332 (413)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~--~~~~~~~~~~~~~ 332 (413)
+++..+.....+++++++..+...+...+.... ......|.+.+ .++ .|+++.. .......++.+++
T Consensus 241 -----~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG 311 (438)
T PRK10133 241 -----DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGA----QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIG 311 (438)
T ss_pred -----cccccchhhhHHHHHhCchHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 000001112344566666554443333222222 22333445545 343 4887765 6677788999999
Q ss_pred HHHHHHHHhhcCCcHHHHHHhHHHHHHHHH
Q 015068 333 TGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (413)
Q Consensus 333 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 362 (413)
+++.+++.||+++|+.+..+..+..+++++
T Consensus 312 ~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~ 341 (438)
T PRK10133 312 RFTGTWLISRFAPHKVLAAYALIAMALCLI 341 (438)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988776665544443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=215.44 Aligned_cols=280 Identities=23% Similarity=0.323 Sum_probs=204.5
Q ss_pred HHHHhhhccccccchhhH-HHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh
Q 015068 57 LGPIQFGFTCGYSSPTQA-EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135 (413)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 135 (413)
++.+...++.....+..| .+.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 82 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence 344555666677788888 8999999999999999999999999999999999999999999999999999997777777
Q ss_pred cChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHH
Q 015068 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCT 211 (413)
Q Consensus 136 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~ 211 (413)
+|++.++++|++.|++.+...+...+++.|++|+++|++++++......+|..+++.+++.+ +||+.|++.++..+
T Consensus 83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~ 162 (352)
T PF07690_consen 83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSL 162 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHH
T ss_pred hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhh
Confidence 88889999999999999999999999999999999999999999999999999999998877 79999999888777
Q ss_pred HHHhh-hccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhh-hHHHHhhhcchhHHHHHHH
Q 015068 212 LLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAI-RFAELKRKRYWFPLMIGIG 289 (413)
Q Consensus 212 ~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 289 (413)
+..++ ..+++++++....+.+.++. ++.+++.. .++.+++++..+...+...
T Consensus 163 ~~~il~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (352)
T PF07690_consen 163 IAAILFILFLPEPPPPRERESPKESE--------------------------SKKPKPLKPGFKSLFKNPVLWILLIAFF 216 (352)
T ss_dssp HHHHHHHCCC---STTTT--SSTTTT----------------------------HHHCCCH-CTHHHHHHCCHHHHHHHH
T ss_pred hhhhhHhhhhhhcccccccccccccc--------------------------cccccccccccccccccchhhhhhhhhh
Confidence 77653 34444433211111000000 00011111 2455555554442222222
Q ss_pred HHHHHHhcCchhHHhchHHH-HhhcCCC-Cch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHH
Q 015068 290 LLVLQQLSGINGVLFYSSNI-FANAGIS-SSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (413)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 365 (413)
...+. ......+.|.+ .+..|.+ ..+ ......++..+++.++.+++.||+++|+..........++.+.+..
T Consensus 217 ~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (352)
T PF07690_consen 217 LFFFV----FSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLL 292 (352)
T ss_dssp HHHHH----HHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHH----HHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 22221 33466666766 4455776 344 4467778888888999999999999988877777666666655554
Q ss_pred H
Q 015068 366 A 366 (413)
Q Consensus 366 ~ 366 (413)
.
T Consensus 293 ~ 293 (352)
T PF07690_consen 293 L 293 (352)
T ss_dssp S
T ss_pred H
Confidence 3
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-26 Score=212.76 Aligned_cols=264 Identities=17% Similarity=0.192 Sum_probs=187.6
Q ss_pred HHHHhhhccccccchhhHH-HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh
Q 015068 57 LGPIQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135 (413)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 135 (413)
+..+...++.++..|.+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++||+|||++++.+.++.+++.+.+.++
T Consensus 22 ~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~ 101 (399)
T PRK05122 22 MFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLA 101 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHh
Confidence 3344455566777788886 678999999999999999999999999999999999999999999999888877666543
Q ss_pred ---c-----ChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHH
Q 015068 136 ---K-----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLA 203 (413)
Q Consensus 136 ---~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~ 203 (413)
+ +++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..+|+.+++.+ +||+.+
T Consensus 102 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~ 181 (399)
T PRK05122 102 GLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLG 181 (399)
T ss_pred hhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHH
Confidence 2 4668899999999999999999999999999999999999999888888888888877655 899988
Q ss_pred HhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhH
Q 015068 204 VLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (413)
++.++..++..+.....|++++ ++++ +.++++.+++. +.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~------~~~~---------------------------------~~~~~~~~~~~--~~ 220 (399)
T PRK05122 182 LLIMLLALLGLLLARPRPAVPP------VKGE---------------------------------RLPFRRVLGRV--WP 220 (399)
T ss_pred HHHHHHHHHHHHHHhcCCCCCC------CCcc---------------------------------chhHHHHHHHH--HH
Confidence 8766655444333332333211 0000 00011111110 11
Q ss_pred HHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHH
Q 015068 284 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 363 (413)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 363 (413)
......+..+ .......+.+.++++.+.+.........+++.+++.+..+++.||+++|+.+..+..+..++.+++
T Consensus 221 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~ 296 (399)
T PRK05122 221 YGMGLALASI----GFGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLL 296 (399)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 1111111111 122334455666666666444455666778888999999999999999999888877777766655
Q ss_pred HH
Q 015068 364 SV 365 (413)
Q Consensus 364 ~~ 365 (413)
..
T Consensus 297 ~~ 298 (399)
T PRK05122 297 WL 298 (399)
T ss_pred HH
Confidence 43
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=210.71 Aligned_cols=276 Identities=10% Similarity=0.037 Sum_probs=204.2
Q ss_pred HHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhc
Q 015068 57 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK 136 (413)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~ 136 (413)
.+.+...+..+...+.+|.+..+++.+..+.+++.+++.++..+++++.|+++||+|||++++.+.++..++.++..+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 85 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVA 85 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666777888989999999999999999999999999999999999999999999999999999888888877
Q ss_pred -----ChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhH
Q 015068 137 -----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGV 207 (413)
Q Consensus 137 -----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~ 207 (413)
+++.++++|+++|++.+...+...+++.|++|+++|++.+++.+....+|..+++.+++.+ +||+.|++.+
T Consensus 86 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 165 (365)
T TIGR00900 86 LLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDA 165 (365)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988776 8999998877
Q ss_pred HHHHHHHhhhccc--cCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHH
Q 015068 208 LPCTLLIPGLFFI--PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (413)
Q Consensus 208 ~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
+..++..+..+.+ ||+++ .+.++. .+ + ..++....++..++++..+...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~--------------~~---~-------~~~~~~~~~~~~~~~~~~~~~~ 216 (365)
T TIGR00900 166 VGFAISALLIVSVRIPELAA-----SEIQAL--------------SN---A-------VLRDTREGIKFVLKNPLLRTLL 216 (365)
T ss_pred HHHHHHHHHHHhcccccCCC-----cccccc--------------ch---h-------HHHHHHhHHHHHHcCcHHHHHH
Confidence 6655554443333 33211 000000 00 0 0011112344555555554444
Q ss_pred HHHHHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHH
Q 015068 286 IGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (413)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 362 (413)
+...+..... ......+.|.+.++ .|.++.+ ......+++.+++.++.+++.||.+||+.+..+....+++.+.
T Consensus 217 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 293 (365)
T TIGR00900 217 LLALLFNLVF---APAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILV 293 (365)
T ss_pred HHHHHHHHHH---HHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 3333322221 11222556666665 5776655 5566677888999999999999999999888776666666555
Q ss_pred HH
Q 015068 363 VS 364 (413)
Q Consensus 363 ~~ 364 (413)
+.
T Consensus 294 ~~ 295 (365)
T TIGR00900 294 VG 295 (365)
T ss_pred HH
Confidence 54
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-26 Score=209.18 Aligned_cols=261 Identities=18% Similarity=0.165 Sum_probs=195.4
Q ss_pred hccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHH
Q 015068 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLF 142 (413)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~ 142 (413)
.+..+.+.|.+|.+++++|.++++.++..+++.++..++++++|+++||+|||+.+..+..+..++.+++.++++++.++
T Consensus 19 ~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (401)
T PRK11043 19 FLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLL 98 (401)
T ss_pred HHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34567778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhhc
Q 015068 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (413)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~ 218 (413)
+.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+ +||+.|++.++..++..+..+
T Consensus 99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888889999999999899888888888888888888777654 999999988777666655555
Q ss_pred cccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcC
Q 015068 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298 (413)
Q Consensus 219 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (413)
+++|+++. ++ +++.+.++++.++++..+...+....... .
T Consensus 179 ~~~~~~~~----~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 218 (401)
T PRK11043 179 RLKPSKKA----RK--------------------------------QSQDALTFKQLLKSKTYLGNVLIFAACSA----A 218 (401)
T ss_pred HcCCCCCc----cc--------------------------------cchHHHHHHHHHcChhHHHHHHHHHHHHH----H
Confidence 55554320 00 00011234445554443332222221111 1
Q ss_pred chhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHH
Q 015068 299 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 363 (413)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 363 (413)
......+.|.++++.|+++.. .......++.+++.+..+++.||+++|+.........+++.+.+
T Consensus 219 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~ 285 (401)
T PRK11043 219 FFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAI 285 (401)
T ss_pred HHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 223445567777777887655 44455567788899999999999999987766655555544433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=210.61 Aligned_cols=268 Identities=19% Similarity=0.195 Sum_probs=198.2
Q ss_pred hhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhH
Q 015068 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF 140 (413)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 140 (413)
........+.+.+|.+.+++|.|.++.++..+.+.++..+++++.|+++||+|||+.++.+.++..++.+++..+++++.
T Consensus 14 ~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~ 93 (392)
T PRK10473 14 LYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSL 93 (392)
T ss_pred HHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 33444455568899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHh-
Q 015068 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP- 215 (413)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~- 215 (413)
+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+ +||+.|++.++..++..+
T Consensus 94 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~ 173 (392)
T PRK10473 94 FLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999989988888887654 899999887766655544
Q ss_pred hhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHH
Q 015068 216 GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQ 295 (413)
Q Consensus 216 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (413)
..+.+||+++. ++ +++ .......++.++++..+...+...+....
T Consensus 174 ~~~~~~~~~~~---~~-~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 218 (392)
T PRK10473 174 SLFILKETRPA---RA-PAA------------------------------SSKPRENSESLLNRFFLSRLVITTLSVTV- 218 (392)
T ss_pred HHHHcCCCCCc---cc-CCc------------------------------cchHHHHHHHHhCHHHHHHHHHHHHHHHH-
Confidence 34456665321 00 000 00001112233333322222222211111
Q ss_pred hcCchhHHhchHHHHh-hcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHH
Q 015068 296 LSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (413)
Q Consensus 296 ~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 366 (413)
......+.|.+++ +.|+++.. ......+++.+++.++.+++.||+++|+.+..+..+..++.+.+.+.
T Consensus 219 ---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 219 ---ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred ---HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122333454443 45776655 45566788889999999999999999999988888777776666543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=210.68 Aligned_cols=279 Identities=18% Similarity=0.136 Sum_probs=189.7
Q ss_pred HhhhccccccchhhHH-HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhc-C
Q 015068 60 IQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-D 137 (413)
Q Consensus 60 ~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~ 137 (413)
+..........+..|. +++++|+|+.+.+++.+++.+++.+++++.|+++||+|||+.++.+.++..++.+++++++ +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~ 90 (366)
T TIGR00886 11 FLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQS 90 (366)
T ss_pred HHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334455667788885 9999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhh----c----------ccchHHHH
Q 015068 138 SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG----L----------FVNWRVLA 203 (413)
Q Consensus 138 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~----~----------~~~w~~~~ 203 (413)
++.+++.|+++|++.+. .+....++.|++|+++|+++.++......+|..+++.++ . ..+||+.|
T Consensus 91 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~ 169 (366)
T TIGR00886 91 YSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAF 169 (366)
T ss_pred HHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchh
Confidence 99999999999998654 566788999999999999999998866666655554443 2 22699998
Q ss_pred H-hhHHHHHH-HHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcch
Q 015068 204 V-LGVLPCTL-LIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYW 281 (413)
Q Consensus 204 ~-~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (413)
+ ..++...+ .++...+.+|+|+.. .++++.. ..... ...+++.....++.++++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 227 (366)
T TIGR00886 170 VIVPAGILLLPALLIFFVGADTPPGK---PATGKLS-----FKGAR--------------WSVGTGALGDQLKVFRDRHT 227 (366)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCccc---ccchhcc-----ccccc--------------ccccchhHHHHHHHHhccch
Confidence 4 43443333 333444456654310 0000000 00000 00000011123445555444
Q ss_pred hHHHHHHHHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHH
Q 015068 282 FPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAA 358 (413)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 358 (413)
+...+....... ....+..+.+.++++ .|.++.+ .......+..++++++.+++.||+|+|+.+..+......
T Consensus 228 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~ 303 (366)
T TIGR00886 228 WILALLYSVTFG----SFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAM 303 (366)
T ss_pred hhHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHH
Confidence 433332222222 233455566667765 4776655 455566778889999999999999999888777766666
Q ss_pred HHHHHHH
Q 015068 359 SFFLVSV 365 (413)
Q Consensus 359 ~~~~~~~ 365 (413)
+..++.+
T Consensus 304 ~~~~~~~ 310 (366)
T TIGR00886 304 GAFLVVL 310 (366)
T ss_pred HHHHHHh
Confidence 5555543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=217.24 Aligned_cols=278 Identities=12% Similarity=0.108 Sum_probs=203.3
Q ss_pred hhhhHHHHHHhHHHHhhhccccccchhhHHHhh----------------------hhccCcchhHHHHHHHHHHHHHHHH
Q 015068 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIIS----------------------DLKLTISEFSIFGSLANVGAMVGAI 103 (413)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~s~~~~~~~~s~~~~~~~~~~~ 103 (413)
+.++.+..++.++......+...++...+.+.+ |++++..+.|++.+.+.+++.++++
T Consensus 15 ~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~ 94 (465)
T TIGR00894 15 SFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQI 94 (465)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHc
Confidence 344556666666666667777777777666665 7899999999999999999999999
Q ss_pred hHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh--cChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHH
Q 015068 104 ASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQL 181 (413)
Q Consensus 104 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 181 (413)
+.|+++||+|||+++..+.++.+++.+++.++ .++..+++.|+++|++.+...+....++.|++|+++|++++++...
T Consensus 95 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 174 (465)
T TIGR00894 95 PVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTS 174 (465)
T ss_pred chHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998887544 5688899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccc-----chHHHHHhhHHHHHHHHhhhcc-ccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHH
Q 015068 182 SVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFF-IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN 255 (413)
Q Consensus 182 ~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (413)
+..+|..+++.+++.+ +||+.|++.++..++..+.++. .+|+|+.. +...++.++.
T Consensus 175 ~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~---------------- 236 (465)
T TIGR00894 175 GFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH--PCISKFEKKY---------------- 236 (465)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC--CCCCHHHHHH----------------
Confidence 9999999988887544 8999999988877666554444 55666421 1111111000
Q ss_pred HHHHHHh--hcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHH
Q 015068 256 EIKRSVA--SSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQV 330 (413)
Q Consensus 256 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~ 330 (413)
.++..+ ..+.+.+..++++++++..+... +..+......+.+..|.|.++++ .|.+..+ .......++..
T Consensus 237 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~ 311 (465)
T TIGR00894 237 -INSSLQGQKGSTRQSLPIKAIPKSLPVWAIW----FAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAW 311 (465)
T ss_pred -HHhhcccccCCCCCCCCHHHHhcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHH
Confidence 000000 00111223466666665443333 33333333456677788888865 4776655 55566788889
Q ss_pred HHHHHHHHHHhhcCCc
Q 015068 331 VATGVNTWLMDKAGRR 346 (413)
Q Consensus 331 ~~~~~~g~l~dr~g~~ 346 (413)
++.++.|+++||+++|
T Consensus 312 i~~~~~g~l~d~~~~~ 327 (465)
T TIGR00894 312 LCSIFAGYLADFLKSS 327 (465)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999997644
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=208.14 Aligned_cols=260 Identities=17% Similarity=0.175 Sum_probs=182.1
Q ss_pred HhhhccccccchhhHH-HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH---H-
Q 015068 60 IQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---F- 134 (413)
Q Consensus 60 ~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~- 134 (413)
+...+..+...|.+|. +.+|+|.|..+.|++.+++.++..+++++.|+++||+|||++++.+.+...++.+... .
T Consensus 25 ~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~ 104 (392)
T PRK12382 25 FLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAIL 104 (392)
T ss_pred HHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3334455667788885 6789999999999999999999999999999999999999999999887776654332 2
Q ss_pred ----hcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhh
Q 015068 135 ----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLG 206 (413)
Q Consensus 135 ----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~ 206 (413)
.++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+...|..++|.+++.+ +||+.+.+.
T Consensus 105 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 105 PVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 357888999999999999999999999999999999999999999999988988888887654 899877665
Q ss_pred HHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHH
Q 015068 207 VLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMI 286 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
.+..++........||.++ +++ ++ .+.++..+. .+.....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~------~~~-----------------------------~~----~~~~~~~~~-~~~~~~~ 224 (392)
T PRK12382 185 MVLPLLAWAFNGTVRKVPA------HAG-----------------------------ER----PSLWSVVGL-IWKPGLG 224 (392)
T ss_pred HHHHHHHHHHHHhccCCCC------Ccc-----------------------------cC----chHHHHHHH-HHHhHHH
Confidence 5443333322222233211 000 00 001111110 0011111
Q ss_pred HHHHHHHHHhcCchhHHhchHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Q 015068 287 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 364 (413)
..+... .......+.+.++++.+.+.........+++.+++++..+++.||+++|+.+..+..+..++.+++.
T Consensus 225 -~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 297 (392)
T PRK12382 225 -LALQGV----GFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW 297 (392)
T ss_pred -HHHHHH----HHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH
Confidence 111111 1223445556666766765544555566777888999999999999999998888877777766554
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=204.75 Aligned_cols=265 Identities=16% Similarity=0.120 Sum_probs=194.5
Q ss_pred HhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 015068 55 VALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134 (413)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 134 (413)
+.++.+...+..+...+.+|.+.+++|.|..++|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~ 90 (381)
T PRK03633 11 LLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL 90 (381)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhcccc---hHHHHHhhHHHHH
Q 015068 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN---WRVLAVLGVLPCT 211 (413)
Q Consensus 135 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~---w~~~~~~~~~~~~ 211 (413)
++|++.++++|+++|++.+...+.....+.+..++++|+++++++..+..+|..+|+.+++.+. ++...+..+....
T Consensus 91 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 170 (381)
T PRK03633 91 MVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVLA 170 (381)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 9999999999999999999999888888889999999999999999999999999999998771 1222232222221
Q ss_pred HHHhhhc-cccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHH
Q 015068 212 LLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (413)
Q Consensus 212 ~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (413)
..+...+ ..++++. + +++..+.++.++++..+........
T Consensus 171 ~~~~~~~~~~~~~~~------------------------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (381)
T PRK03633 171 AILPLLFTRILNQQA------------------------------------E---NHDSTSIWPMLKLRQARLGVNGCII 211 (381)
T ss_pred HHHHHHHhcccCCCC------------------------------------C---CCCCCCHHHHHHhcchHHHHHHHHH
Confidence 1111111 1121100 0 0001123344455443322221111
Q ss_pred HHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHH
Q 015068 291 LVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (413)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 362 (413)
... .......+.|.++++.|.++.. .......++.+++++..+++.||+++|+.+..+.....++.+.
T Consensus 212 ~~~----~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~ 281 (381)
T PRK03633 212 SGI----VLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIA 281 (381)
T ss_pred HHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 111 1223345577778777877655 4555667888999999999999999999888777776665543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=206.52 Aligned_cols=273 Identities=12% Similarity=0.111 Sum_probs=200.6
Q ss_pred HHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 015068 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII 132 (413)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 132 (413)
..++...+..++..+...|..|.+++++|+|+.+.|++.+.+.+++.+++++.|++.||+|||++++.+.++.+++.+++
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 34455667778888888999999999999999999999999999999999999999999999999999999999999886
Q ss_pred HH---hcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc------------
Q 015068 133 SF---SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------------ 197 (413)
Q Consensus 133 ~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------------ 197 (413)
.. .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++.++..+
T Consensus 86 ~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 86 WPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred HHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 54 468999999999999999999999999999999999999999999999999999988876533
Q ss_pred ------------------chHHHHHhhHHHHHHHHhhhcc--ccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHH
Q 015068 198 ------------------NWRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEI 257 (413)
Q Consensus 198 ------------------~w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (413)
+||++|++.+++.++..+...+ .||.++ .++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-------~~~---------------------- 216 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-------SDA---------------------- 216 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-------ccc----------------------
Confidence 4999998877765555443322 333210 000
Q ss_pred HHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCC--Cch--hHHHHHHHHHHHHH
Q 015068 258 KRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGIS--SSN--VATFGLGVVQVVAT 333 (413)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~--~~~~~~~~~~~~~~ 333 (413)
++.+...+.+++++++..+...+...++...+ .....+.+.+.++.+.. ... ...........+|+
T Consensus 217 ------~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e----~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR 286 (410)
T TIGR00885 217 ------KQISFSASLSRLARIRHYREGVIAQFFYVGVQ----IMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISR 286 (410)
T ss_pred ------ccccchhhHHHHHhChhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00001112334555554444444333333332 23445666666654322 221 23334446678999
Q ss_pred HHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Q 015068 334 GVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 334 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 364 (413)
++++++.||+++|+.+.++.....+.+++..
T Consensus 287 ~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~ 317 (410)
T TIGR00885 287 FIGTWLISYLAAHKVLMAYAIIGMALCLGSI 317 (410)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988777776666655554
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=212.73 Aligned_cols=303 Identities=16% Similarity=0.150 Sum_probs=211.9
Q ss_pred HHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 015068 54 VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133 (413)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 133 (413)
.++++.+...++.....+..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+..+.+++.++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 93 (471)
T PRK10504 14 IVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCA 93 (471)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 33455566677778888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHH
Q 015068 134 FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLP 209 (413)
Q Consensus 134 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~ 209 (413)
++++++.++++|+++|++.+...+...+++.|++|+++|+++.++......+|..++|.+++.+ +||+.|++....
T Consensus 94 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~ 173 (471)
T PRK10504 94 LSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPV 173 (471)
T ss_pred HhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888765 899999987766
Q ss_pred HHHHHhhh-ccccCchHHHHHcCChHHHHHHHHH---------HhCCCc---chHHHHHH-------H-HH-HHhhcchh
Q 015068 210 CTLLIPGL-FFIPESPRWLAKMGMTEDFESSLQV---------LRGFDT---DISIEVNE-------I-KR-SVASSSRR 267 (413)
Q Consensus 210 ~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~~-------~-~~-~~~~~~~~ 267 (413)
..+..+.. ...|+.+. ++.+.|........ ..+.+. ........ . .. ..++...+
T Consensus 174 ~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (471)
T PRK10504 174 GIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNR 250 (471)
T ss_pred HHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 55554433 33444321 11122221111000 001000 00000000 0 00 00111111
Q ss_pred hhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcC
Q 015068 268 TAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAG 344 (413)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g 344 (413)
+..+. ++++++.+........+..+. ......+.|++++. .|.++.. +......++.+++.++.+++.||+|
T Consensus 251 ~~~~~-~l~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g 325 (471)
T PRK10504 251 ALFSL-KLFRTRTFSLGLAGSFAGRIG----SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFG 325 (471)
T ss_pred CccCH-HHhcccchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11222 356666555444333333322 23445566777764 5776555 4555566777788889999999999
Q ss_pred CcHHHHHHhHHHHHHHHHHH
Q 015068 345 RRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~ 364 (413)
+|+.+..+..+..++..++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~ 345 (471)
T PRK10504 326 YRRVLVATTLGLALVSLLFM 345 (471)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 99999888887777666554
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=209.32 Aligned_cols=278 Identities=13% Similarity=0.140 Sum_probs=188.2
Q ss_pred HHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHH
Q 015068 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (413)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 129 (413)
.++...++.......+...+....|.+.++ |+|..+.+++.+.+.+++++++++.|+++||+|||++++.+.++.+++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~ 107 (452)
T PRK11273 29 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM 107 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHH
Confidence 333434444455555555566778888888 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc----ChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHH-HHHHHhhcc----cchH
Q 015068 130 LIISFSK----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGI-MLAYLLGLF----VNWR 200 (413)
Q Consensus 130 ~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~i~~~----~~w~ 200 (413)
+++++++ +++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+..+|. ..+++++.. .+||
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~ 187 (452)
T PRK11273 108 LFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWH 187 (452)
T ss_pred HHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHH
Confidence 9888763 678889999999999998888888889999999999999999999988886 445554321 2899
Q ss_pred HHHHhhHHHHHHH-HhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhh-HHHHhhh
Q 015068 201 VLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIR-FAELKRK 278 (413)
Q Consensus 201 ~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 278 (413)
+.|++.++..++. ++..+++||+|+....+ +.++.++ +.+ + + .+..++++.+.+.. .+.++++
T Consensus 188 ~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~------~~~-~------~-~~~~~~~~~~~~~~~~~~~~~~ 252 (452)
T PRK11273 188 AALYMPAFAAILVALFAFAMMRDTPQSCGLP-PIEEYKN------DYP-D------D-YNEKHEQELTAKQIFMQYVLPN 252 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-Chhhhhh------ccc-c------c-cccccCCCccHHHHHHHHHHcC
Confidence 9999877765554 44556678876531100 0000000 000 0 0 00000000001111 1223444
Q ss_pred cchhHHHHHHHHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhc--CCcH
Q 015068 279 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKA--GRRL 347 (413)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~--g~~~ 347 (413)
+..+...+...+... ..+....|.|.++++ .|++... .......++.+++.++.|+++||+ +||+
T Consensus 253 ~~~~~~~l~~~~~~~----~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~ 322 (452)
T PRK11273 253 KLLWYIAIANVFVYL----LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 322 (452)
T ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 443333332222222 234566788888876 4776544 455566788889999999999998 4444
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=205.27 Aligned_cols=260 Identities=20% Similarity=0.243 Sum_probs=196.2
Q ss_pred cccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHH
Q 015068 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMG 144 (413)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (413)
....+.|.+|.+.+++|+|+++.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+.+.++++++.+++.
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 44566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHh-hhcc
Q 015068 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFF 219 (413)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~-~~~~ 219 (413)
|+++|++.+...+...+++.|++|+++|++++++......+|..+++.+++.+ +||+.|++.++..++..+ ..++
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999888765 899999887776655544 4455
Q ss_pred ccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCc
Q 015068 220 IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299 (413)
Q Consensus 220 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (413)
+||+++.. ++ ++ .+.++....+++.++++......+...+ .....
T Consensus 166 ~~~~~~~~---~~-~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 210 (377)
T PRK11102 166 IPETLPKE---RR-QP---------------------------FHLRTTIRNFASLFRHKRVLGYMLASGF----SFAGM 210 (377)
T ss_pred CCccCccc---cc-CC---------------------------CChHHHHHHHHHHHcChHHHHHHHHHHH----HHHHH
Confidence 66653210 00 00 0000011223444544433322222211 11122
Q ss_pred hhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHH
Q 015068 300 NGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (413)
Q Consensus 300 ~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 359 (413)
.....+.+.++.+ .|.++.+ .......++.+++.++.+++.||+|+|+.+..+.....+.
T Consensus 211 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~ 273 (377)
T PRK11102 211 FSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIM 273 (377)
T ss_pred HHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3333444554444 5777655 5566677888999999999999999999888877654443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=207.90 Aligned_cols=353 Identities=18% Similarity=0.185 Sum_probs=251.0
Q ss_pred hcCchhhhHHHHHHhHHHHhhhccccccchhhHHHhhhh-c-------cCcchhHHHHHHHHHHHHHHHHhHHHHHhhhc
Q 015068 42 RDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDL-K-------LTISEFSIFGSLANVGAMVGAIASGQIAEYIG 113 (413)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~-------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G 113 (413)
...+|+....+.+...+.+.++++...++.+.|.+...+ | .++...+.+..+..+|..+|++++|++.||+|
T Consensus 33 ~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~G 112 (538)
T KOG0252|consen 33 EGLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFG 112 (538)
T ss_pred cchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345678888889999999999999999999988776653 2 44556789999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcC-------hhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHH
Q 015068 114 RKGSLMIAAVPNIIGWLIISFSKD-------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186 (413)
Q Consensus 114 rr~~l~~~~~~~~~~~~~~~~~~~-------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 186 (413)
||+++...+++..++++++++... ..++...|++.|+|.|+-+|...++.+|...+++||...+...+..+.|
T Consensus 113 RK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~G 192 (538)
T KOG0252|consen 113 RKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFG 192 (538)
T ss_pred chhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchh
Confidence 999999999999999998877531 4577778999999999999999999999999999999888877777777
Q ss_pred HHHHHHhhccc-------------------chHHHHHhhHHHHHHHHhhhccccCchHHHHHcCCh-HHHHHHHHHHhCC
Q 015068 187 IMLAYLLGLFV-------------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMT-EDFESSLQVLRGF 246 (413)
Q Consensus 187 ~~~~~~i~~~~-------------------~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~ 246 (413)
...|.+++-.+ -||..+.+++++.++.....+.+||++++.....++ +.+. .+..+.
T Consensus 193 ilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~ 269 (538)
T KOG0252|consen 193 ILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKV 269 (538)
T ss_pred HhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hccccc
Confidence 66665555332 399999999999988888888999999876322211 1111 111110
Q ss_pred CcchHHHHHHHHHHHhhcchhhhhh---HHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--h-
Q 015068 247 DTDISIEVNEIKRSVASSSRRTAIR---FAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--V- 320 (413)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~- 320 (413)
. +...+.++ ..+.....++.+ +...+..+ .-+.++..+..++..-..++..+.+...++++.|..+.. .
T Consensus 270 ~-~~~~~~~~---~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~ 344 (538)
T KOG0252|consen 270 L-SVDIEAES---TAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYH 344 (538)
T ss_pred c-ccccchhh---ccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHH
Confidence 0 00000000 001111111122 33333333 335667777888877777888888999999887776554 1
Q ss_pred -------H-HHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHHH
Q 015068 321 -------A-TFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLV 392 (413)
Q Consensus 321 -------~-~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (413)
. ..+...+.+.|..+...++|++|||+..+.|++++.+.++.++..+..... ....++...
T Consensus 345 ~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~-----------~~Gf~v~y~ 413 (538)
T KOG0252|consen 345 ELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLEN-----------TIGFVVLYS 413 (538)
T ss_pred HHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccc-----------cCceeehHH
Confidence 1 111222333466677788999999999999999999999988876542111 112223333
Q ss_pred HHHHHHhccccccceeeecCC
Q 015068 393 TVVISFSLGVGAIPWVIMSEV 413 (413)
Q Consensus 393 ~~~~~~~~~~~~i~~~~~~E~ 413 (413)
+..++..+|++....++++|+
T Consensus 414 l~~ff~NFGPn~ttfivpaE~ 434 (538)
T KOG0252|consen 414 LTFFFGNFGPNATTFIVPAEI 434 (538)
T ss_pred HHHHHHhcCCCceeEEeehhh
Confidence 445666788888899999985
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-27 Score=214.75 Aligned_cols=269 Identities=14% Similarity=0.104 Sum_probs=193.5
Q ss_pred HHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcCh
Q 015068 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS 138 (413)
Q Consensus 59 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~ 138 (413)
.+...++...+++..|.+.+++|.|..+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.+++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 83 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL 83 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH
Confidence 34555677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHH-Hhhcc----cchHHHHHhhHHHHHHH
Q 015068 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY-LLGLF----VNWRVLAVLGVLPCTLL 213 (413)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~i~~~----~~w~~~~~~~~~~~~~~ 213 (413)
+.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++ .++.. .+||+.|++.++..++.
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (379)
T TIGR00881 84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIV 163 (379)
T ss_pred HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888 34433 38999998877665554
Q ss_pred H-hhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHH
Q 015068 214 I-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLV 292 (413)
Q Consensus 214 ~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (413)
. +..++.||+|+....+.++++. +++. ++.++..+++.+..+...+++++++..+...+...+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (379)
T TIGR00881 164 SLICFLLLRDSPQSCGLPPAEEMP----------NEEP----DGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVY 229 (379)
T ss_pred HHHHheeeCCCccccccCccccCc----------cccc----ccccccccccccchHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3 4455567665421110000000 0000 00000000111112223445555554444333332222
Q ss_pred HHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015068 293 LQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGR 345 (413)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~ 345 (413)
. ....+..+.+.++++ .|.++.+ .......++.+++.++.+++.||..+
T Consensus 230 ~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~ 281 (379)
T TIGR00881 230 V----VRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFN 281 (379)
T ss_pred H----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcC
Confidence 2 233455566776654 4776655 55666788889999999999998643
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-26 Score=196.97 Aligned_cols=294 Identities=17% Similarity=0.208 Sum_probs=217.5
Q ss_pred ccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChh---HHH
Q 015068 66 CGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS---FLF 142 (413)
Q Consensus 66 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---~l~ 142 (413)
....+++.+.+.+|+|+|++|.+++.++..+..++..++.|.+.||+|.|++..++.++..+.++..+++.+.+ +++
T Consensus 30 W~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll 109 (417)
T COG2223 30 WTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLL 109 (417)
T ss_pred HHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHH
Confidence 35566777788899999999999999999999999999999999999999999999999999999999987555 999
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHH----HHHhhcccc---hHHHHHhhHHHHHHHHh
Q 015068 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIML----AYLLGLFVN---WRVLAVLGVLPCTLLIP 215 (413)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~----~~~i~~~~~---w~~~~~~~~~~~~~~~~ 215 (413)
+++++.|++. ..+.+...++++++||+++|.++|++. ..++|..+ +|.+....+ ||....+..+..++..+
T Consensus 110 ~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v 187 (417)
T COG2223 110 VIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAV 187 (417)
T ss_pred HHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999974 567788999999999999999999998 66666555 555555557 99888877766666544
Q ss_pred -hhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhh-hhHHHHhhhcchhHHHHHHHHHHH
Q 015068 216 -GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTA-IRFAELKRKRYWFPLMIGIGLLVL 293 (413)
Q Consensus 216 -~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 293 (413)
.++...|.|....+ .++.. ..++.+++++..| ...+.++
T Consensus 188 ~~~~~~~d~p~~r~~-----------------------------------~~~~~~~~~~~v~~~~~~W----~lsllY~ 228 (417)
T COG2223 188 LAWLGMNDVPEHRAS-----------------------------------VKPQLPAQLKAVFSNKDTW----LLSLLYF 228 (417)
T ss_pred HHHHHhCCChhhhcc-----------------------------------ccccchhHHHHHhcCcchH----HHHHHHH
Confidence 45556666542000 00011 2344455444433 3444555
Q ss_pred HHhcCchhHHhchHHHHhhc-CCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHHHHhc
Q 015068 294 QQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLE 370 (413)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (413)
..+..+..+..+.|.++++. |.++.. .......+.+.+.++.+|+++||+|.+|.+...+..++++...+.......
T Consensus 229 ~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~ 308 (417)
T COG2223 229 ATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGF 308 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccc
Confidence 55556778888888888764 887766 566666778889999999999999999999999999888888777543211
Q ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHhcccccccee
Q 015068 371 GFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWV 408 (413)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 408 (413)
.+ .......+........+.++|-+.+.-.
T Consensus 309 ~~--------~~~~~~~~~~~l~l~~~~G~GnGsvfk~ 338 (417)
T COG2223 309 GH--------GGSFVVFVAVFLALFVFAGLGNGSVFKM 338 (417)
T ss_pred cc--------CcchHHHHHHHHHHHHHhccCcchheee
Confidence 11 1223334444445566666766655443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=205.08 Aligned_cols=262 Identities=15% Similarity=0.064 Sum_probs=183.5
Q ss_pred HHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcC
Q 015068 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD 137 (413)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~ 137 (413)
+.+...+.........+.+.+|++.++.+.+++.+.+.+++.+.+++.|+++||+|||++++.+.++.+++.++++++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~ 90 (393)
T PRK11195 11 AQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH 90 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 33343443344445556678899999999999999999999999999999999999999999999999999888877766
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhHHHHHHHH
Q 015068 138 SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLI 214 (413)
Q Consensus 138 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~~~ 214 (413)
. ++.|+++|++.+...|...+++.|++|+++|++++++.+....+|..+||.+++.+ .|+..+.+.+...++..
T Consensus 91 ~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~ 167 (393)
T PRK11195 91 P---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAA 167 (393)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 77899999999999999999999999999999999999999999999999999887 45555555544444444
Q ss_pred hhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHH
Q 015068 215 PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQ 294 (413)
Q Consensus 215 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (413)
+..+.+||+++.. ++++++..+. .+ +....++.+++++..+.......+.+..
T Consensus 168 ~~~~~l~~~~~~~--~~~~~~~~~~-----------------~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (393)
T PRK11195 168 LFNLFIPRLGARR--PGQSWNPIAL-----------------LR--------DFFHACRVLWRDKLGRFSLAGTTLFWGA 220 (393)
T ss_pred HHHhcCCCCcccc--cccCCCHHHH-----------------HH--------HHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 4556677764311 0000000000 00 0011234455555544443333222222
Q ss_pred HhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHh
Q 015068 295 QLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISS 353 (413)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~ 353 (413)
. ....+..+.+.++ .|.++.+ ......+++.+++++..+++.||.++++.+..+.
T Consensus 221 ~----~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~ 278 (393)
T PRK11195 221 G----ATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI 278 (393)
T ss_pred H----HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 2 1222223333332 3776655 5666778889999999999999999888776664
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=199.69 Aligned_cols=244 Identities=14% Similarity=0.157 Sum_probs=180.7
Q ss_pred hccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHH
Q 015068 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLF 142 (413)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~ 142 (413)
.+....+.|.+|.+.+++|.|+.+.+++.+++.++..+++++.|+++||+|||+++..+..+..++.+++.++++++.++
T Consensus 21 ~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 100 (394)
T PRK11652 21 QMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLI 100 (394)
T ss_pred HHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 34556777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHh-hh
Q 015068 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GL 217 (413)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~-~~ 217 (413)
+.|++.|++.+...+....+..|.+++++|+++.++.+.+..+|..++|.+++.+ +||+.|++.++..++..+ ..
T Consensus 101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK11652 101 AASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMA 180 (394)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888999999999999999999999999988888887665 899999987766554433 34
Q ss_pred ccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhc
Q 015068 218 FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (413)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (413)
++.||+++.. ++ +.+....+++.++++..+...+.......
T Consensus 181 ~~~~~~~~~~-----~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 221 (394)
T PRK11652 181 RWMPETRPAD-----AR------------------------------RTRVLASYRTLLSNRRFNCYLLMLIGTLA---- 221 (394)
T ss_pred HhCCccCccc-----cc------------------------------hhHHHHHHHHHHcChHHHHHHHHHHHHHH----
Confidence 5567754210 00 00012233444554444333332222111
Q ss_pred CchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015068 298 GINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGR 345 (413)
Q Consensus 298 ~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~ 345 (413)
.......+.+.++++ .|.++.+ .......++.+++..+.+++.||.++
T Consensus 222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 272 (394)
T PRK11652 222 GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 272 (394)
T ss_pred HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333344555555 5776555 34444566777788888888888873
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-24 Score=198.62 Aligned_cols=246 Identities=15% Similarity=0.041 Sum_probs=173.9
Q ss_pred hhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH---H-hcChhHHHHHHH
Q 015068 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---F-SKDSSFLFMGRL 146 (413)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~ 146 (413)
+.++.+.+|+|.|+++.++..+.+.++..+++++.|+++||+|||+++..+..+.+++.+++. . .++++.+++.|+
T Consensus 34 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 113 (402)
T TIGR00897 34 GWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYG 113 (402)
T ss_pred HhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHH
Confidence 455667788999999999999999999999999999999999999999999999998877653 3 357888889999
Q ss_pred HHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHH-HHHHHhhccc----chHHHHHhhHHHHHHHHh-hhccc
Q 015068 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGI-MLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFI 220 (413)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~i~~~~----~w~~~~~~~~~~~~~~~~-~~~~~ 220 (413)
++|++.+...+....++.+++|+++|++++++.+.+.++|. .+++.+++.+ ||+..++......++..+ ..++.
T Consensus 114 i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 193 (402)
T TIGR00897 114 IRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSN 193 (402)
T ss_pred HHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999988888888889999999999999999999999996 5788877554 766555443332222222 23333
Q ss_pred cCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCch
Q 015068 221 PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300 (413)
Q Consensus 221 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (413)
++.++. ++.+ ++ ++.++.+..++++++++..+...+... .......
T Consensus 194 ~~~~~~--~~~~-~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 239 (402)
T TIGR00897 194 KDIFTP--QHMQ-TR---------------------------EKFSELGKAATILFTNPNVLLGGMVRI----INTIGLF 239 (402)
T ss_pred CCCCCc--cccc-CC---------------------------cchhhHHHHHHHHHcChhHHHHHHHHH----HHHHHHH
Confidence 432110 0000 00 000011123445566654443332222 2222345
Q ss_pred hHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHH
Q 015068 301 GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLL 350 (413)
Q Consensus 301 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 350 (413)
.+..+.|.+.++.|++..+ .......+++.++.+..|+++||++||+.+.
T Consensus 240 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~ 291 (402)
T TIGR00897 240 GFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR 291 (402)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 5667888888888887766 4445567889999999999999999988764
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=203.17 Aligned_cols=279 Identities=14% Similarity=0.122 Sum_probs=191.2
Q ss_pred HHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHH
Q 015068 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (413)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 129 (413)
.......+.......+...+....|.+++ +|+++++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~ 105 (438)
T TIGR00712 27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVM 105 (438)
T ss_pred HHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHH
Confidence 33344444555555566666666777776 59999999999999999999999999999999999999999999999998
Q ss_pred HHHHHh----cChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhcc-----cchH
Q 015068 130 LIISFS----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-----VNWR 200 (413)
Q Consensus 130 ~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~-----~~w~ 200 (413)
++.+.. +++..+.+.|++.|++.+..++.....+.|++|+++|++++++++.+..+|..+++.+.+. .+||
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~ 185 (438)
T TIGR00712 106 LLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWH 185 (438)
T ss_pred HHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhH
Confidence 887764 4677788899999999999999899999999999999999999999999998888765433 2899
Q ss_pred HHHHhhHHHHHHHH-hhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhc
Q 015068 201 VLAVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKR 279 (413)
Q Consensus 201 ~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (413)
+.|++.++..++.. +..+++||+|+....+. .++ . +.+..+. ..++.+.+.+.++...+..++++
T Consensus 186 ~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~-~------~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 251 (438)
T TIGR00712 186 AALYFPAICAIIVALFAFAMMRDTPQSCGLPP-IEE-Y------RNDYPDD------YNEKAEQELTAKEIFMQYVLPNK 251 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC-chh-c------ccccccc------cccccccccchHHHHHHHHccCc
Confidence 99999877766654 44556788765321000 000 0 0000000 00000000000111112344554
Q ss_pred chhHHHHHHHHHHHHHhcCchhHHhchHHHHhhc-CCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcH
Q 015068 280 YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRL 347 (413)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 347 (413)
..+...+...+... ..+.+..|.|.++++. |+++.. .......+.++++.+..+++.||+++++
T Consensus 252 ~~~~~~~~~~~~~~----~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~ 318 (438)
T TIGR00712 252 LLWYIAIANVFVYL----LRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN 318 (438)
T ss_pred hHHHHHHHHHHHHH----HHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 44443332222222 2345666788888764 776654 5566677889999999999999996543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=196.61 Aligned_cols=258 Identities=17% Similarity=0.195 Sum_probs=188.4
Q ss_pred cccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHH
Q 015068 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMG 144 (413)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (413)
......|.+|.+++++|.|.++.+++.+++.++..+++++.|+++||+|||+++..+.++..++.+.+ .+++++.+++.
T Consensus 15 ~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 93 (355)
T TIGR00896 15 ALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAG 93 (355)
T ss_pred ccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999998888888877 78899999999
Q ss_pred HHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc------chHHHHHhhHHHHHHHHhhhc
Q 015068 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLF 218 (413)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------~w~~~~~~~~~~~~~~~~~~~ 218 (413)
|++.|++.+...+....++.|+++ ++|++++++.+.+..+|..+++.++..+ +||+.|...++..++... .
T Consensus 94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~ 170 (355)
T TIGR00896 94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--A 170 (355)
T ss_pred HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--H
Confidence 999999999988888888999886 6899999999999999988888776554 399888766554333222 2
Q ss_pred cccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcC
Q 015068 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298 (413)
Q Consensus 219 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (413)
++|+.++ +++ ++++..+...++.++++..+...+...+. ...
T Consensus 171 ~~~~~~~------~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 212 (355)
T TIGR00896 171 WIPQVRR------RVA----------------------------ANQTTTRLTPVRIWRSPLAWQVTVFFGLQ----SGL 212 (355)
T ss_pred Hhhhhcc------ccC----------------------------CCCCCCCCCCchhhcCHhHHHHHHHHHHH----HHH
Confidence 2343211 000 00000011233444444433332222221 122
Q ss_pred chhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcC-CcHHHHHHhHHHHHHHHHHH
Q 015068 299 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAG-RRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g-~~~~~~~~~~~~~~~~~~~~ 364 (413)
+.....|.|.++++.|.+..+ .......++.++++++.|++.||++ ||+.+..+..+.+++.+.+.
T Consensus 213 ~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 281 (355)
T TIGR00896 213 YYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLL 281 (355)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Confidence 344566788888888887655 5666778899999999999999994 56666666666666655544
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-25 Score=202.55 Aligned_cols=289 Identities=16% Similarity=0.162 Sum_probs=214.4
Q ss_pred chhhhHHHHHHhHHHHhhhccccccc-hhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHH
Q 015068 45 SVSVVFCVLVVALGPIQFGFTCGYSS-PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123 (413)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 123 (413)
++..+.++..++...+....+...++ +.+..+.+|.+....+.+++.++++++++++.++++.+.||++..+.+....+
T Consensus 40 ~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~ 119 (495)
T KOG2533|consen 40 RKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGI 119 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHH
Confidence 33444555555555555555554433 23344668999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc------
Q 015068 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------ 197 (413)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------ 197 (413)
++++..++....+|++.+++.|++.|+..+..+|....+++.|+.+++|++.++++.+...+|.++|.+++..+
T Consensus 120 ~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~ 199 (495)
T KOG2533|consen 120 LWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS 199 (495)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC
Confidence 99998888888999999999999999999999999999999999999999999999999999999999988662
Q ss_pred ----chHHHHHhhHHHHHHHHh-hhccccCchHH--HHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhh--cchhh
Q 015068 198 ----NWRVLAVLGVLPCTLLIP-GLFFIPESPRW--LAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVAS--SSRRT 268 (413)
Q Consensus 198 ----~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 268 (413)
||||.|++.+++.++..+ +.+++|+.|.. ..++. |..-..+ +.++.... .++.+
T Consensus 200 ~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~---ek~~~~~--------------~~~~~~~~~~~~~~~ 262 (495)
T KOG2533|consen 200 GGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDE---EKELVVE--------------RLRESPSGGIENKFK 262 (495)
T ss_pred CCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchH---HHHHHHH--------------HHHhccCCCcccccC
Confidence 899999998887777655 56668998861 11111 1000000 11111111 11134
Q ss_pred hhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhh---
Q 015068 269 AIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDK--- 342 (413)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr--- 342 (413)
+..+++.++++..++..+ ..++.....+.+.+|.|.++++ .|++..+ ...++..++++++.++.|+++||
T Consensus 263 ~~~~~~a~~dp~vw~~~l----~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~ 338 (495)
T KOG2533|consen 263 WKGFKEALKDPGVWPFSL----CYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKT 338 (495)
T ss_pred HHHHHHHHhchhHHHHHH----HHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhh
Confidence 455667777765554444 3344444567788999999988 3576555 77888899999999999999999
Q ss_pred -cCCcHHHHHHhH
Q 015068 343 -AGRRLLLLISSS 354 (413)
Q Consensus 343 -~g~~~~~~~~~~ 354 (413)
..+|........
T Consensus 339 ~~~~~~~~~~~~~ 351 (495)
T KOG2533|consen 339 IFARRLLFIVFLC 351 (495)
T ss_pred hHHHHHHHHHHHH
Confidence 445554444433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=197.80 Aligned_cols=262 Identities=13% Similarity=0.163 Sum_probs=182.5
Q ss_pred HHhhhccccccchhhHH-HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHH-HHHHHHHHHHHHHHhc
Q 015068 59 PIQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI-AAVPNIIGWLIISFSK 136 (413)
Q Consensus 59 ~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~~ 136 (413)
++..++..+...|.+|. +++++|.|+.+.|++.+++.+...+.+++.|+++||+||||.++. +..+..++.+++++++
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 85 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNR 85 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcc
Confidence 45556666777788886 578899999999999999999999999999999999999887654 5666677788889999
Q ss_pred ChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhH--hhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHH
Q 015068 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL--GSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (413)
Q Consensus 137 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~ 210 (413)
|++.+++.|++.|.+.+...|...++..|+.++++|++. .+....+.++|..+++.+++.+ +||+.|++.++..
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~ 165 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAF 165 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHH
Confidence 999999999999988888888888899999887777654 5777777788888888877655 8999999988776
Q ss_pred HHHHhh-hccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHH
Q 015068 211 TLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIG 289 (413)
Q Consensus 211 ~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (413)
++..+. .+++||+|+...++ + ...+.++.++++..+.......
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~----~--------------------------------~~~~~~~~~~~~~~~~~~~~~~ 209 (375)
T TIGR00899 166 VLCGVLVWLFLPSYPRGAPGA----L--------------------------------TRLEVRGLLASRDTRLLFVACT 209 (375)
T ss_pred HHHHHHHHHhCCCcccCcccc----c--------------------------------CcchhhhhhcCcchHHHHHHHH
Confidence 655544 44578765411000 0 0001122333333333333222
Q ss_pred HHHHHHhcCchhHHhchHHHHh-hcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHH
Q 015068 290 LLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (413)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 360 (413)
+.+.. ......+.|.+++ +.|.++.+ .......+..+++.++.+++.||++||+.+..+.....+..
T Consensus 210 ~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~ 279 (375)
T TIGR00899 210 LMWGC----NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFY 279 (375)
T ss_pred HHHHH----HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 22221 1222334455543 45776655 33334445667788899999999999998877665544443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-24 Score=196.53 Aligned_cols=264 Identities=22% Similarity=0.303 Sum_probs=183.5
Q ss_pred hhhccccccchhhHHHhhhhc--cCcchhHHHHHH-----HHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 015068 61 QFGFTCGYSSPTQAEIISDLK--LTISEFSIFGSL-----ANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133 (413)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~~~~--~s~~~~~~~~s~-----~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 133 (413)
.+.++...+++..+.+.+++. .++++.+...+. ..++..+++++.|+++||+|||+++..+.++..++.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 83 (394)
T TIGR00883 4 VEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 345566666677777776653 455666555443 3333456899999999999999999999999999999999
Q ss_pred HhcChh--------HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhc----------
Q 015068 134 FSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL---------- 195 (413)
Q Consensus 134 ~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~---------- 195 (413)
+++++. .++++|+++|++.+...+....++.|++++++|++..++...+..+|..+++.++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~ 163 (394)
T TIGR00883 84 LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDA 163 (394)
T ss_pred hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999875 47889999999999999999999999999999999999999999999998887653
Q ss_pred --ccchHHHHHhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHH
Q 015068 196 --FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFA 273 (413)
Q Consensus 196 --~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (413)
..+||+.|++.++..++........||++++..+++ ++++.+.+.+
T Consensus 164 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~ 211 (394)
T TIGR00883 164 LLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE--------------------------------KHKKKRGPIR 211 (394)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh--------------------------------ccccccCCHH
Confidence 238999998877766655555555676654211100 0011112234
Q ss_pred HHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHh-hcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHH
Q 015068 274 ELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLL 350 (413)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 350 (413)
+.++++.. ........ .+...........+.|.+++ +.|.++.+ .......+...++.++.+++.||+|||+.+.
T Consensus 212 ~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 289 (394)
T TIGR00883 212 ETLTKHRK-PFLLGLGL-VIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI 289 (394)
T ss_pred HHHHhchH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 44444321 12222222 22222223455566777774 45776655 4556667888899999999999999999877
Q ss_pred HHhHHHHH
Q 015068 351 ISSSGMAA 358 (413)
Q Consensus 351 ~~~~~~~~ 358 (413)
.+..+..+
T Consensus 290 ~~~~~~~~ 297 (394)
T TIGR00883 290 IFTVLAAL 297 (394)
T ss_pred HHHHHHHH
Confidence 55544433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=201.70 Aligned_cols=278 Identities=11% Similarity=0.062 Sum_probs=184.4
Q ss_pred hHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHH
Q 015068 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (413)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 128 (413)
|.++....+...........++...|.+.+++|.|.++.+++.+.+.++..++.++.|+++||+|||++++.+.++..++
T Consensus 18 w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 97 (455)
T TIGR00892 18 WVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLG 97 (455)
T ss_pred hHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHH
Confidence 44444444443333333455677889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHH-HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHH
Q 015068 129 WLIISFSKDSSFLFM-GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLA 203 (413)
Q Consensus 129 ~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~ 203 (413)
+++++++++++.+++ .|+++|++.+...+...+++.++++ ++|+++.++.+.+..+|..++|.+++.+ |||+.|
T Consensus 98 ~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f 176 (455)
T TIGR00892 98 MILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSF 176 (455)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHH
Confidence 999999999988875 5799999998877777888899986 7899999999999999999888887665 899999
Q ss_pred HhhHHHHHHHHhhhccc-cCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchh
Q 015068 204 VLGVLPCTLLIPGLFFI-PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWF 282 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (413)
++.++..++..+..+++ ++.+... +.+.++. +.....+ .. + +.+.....++..+... .+.++++..+
T Consensus 177 ~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~----~~~~~~~-~~--~--~~~~~~~~~~~~~~~~-~~~~~~~~~~ 244 (455)
T TIGR00892 177 LILGGLLLHCCVCGALMRPVGPSQR--VSKSKSK----EGLPPDG-ST--K--KLSKKSTAEKINRFLD-FSLFTHRGFL 244 (455)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcccc--ccccccc----ccCCCCC-cc--c--cccccchhhhhhhhcc-hHHhcCchHH
Confidence 98887666554443333 3221100 0000000 0000000 00 0 0000000000000011 1344554443
Q ss_pred HHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhc
Q 015068 283 PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKA 343 (413)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~ 343 (413)
.......+.. ........+.+.+.++.|+++.+ ......+++.++++++.+++.||.
T Consensus 245 ~~~~~~~l~~----~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~ 303 (455)
T TIGR00892 245 VYLSGNVIMF----LGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK 303 (455)
T ss_pred HHHHHHHHHH----HHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3332222222 22334455667777777887655 556667888889999999999973
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=195.48 Aligned_cols=270 Identities=16% Similarity=0.088 Sum_probs=186.7
Q ss_pred HHHHhhhccccccchhhHHHhhhhccCcch-----hHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHH
Q 015068 57 LGPIQFGFTCGYSSPTQAEIISDLKLTISE-----FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI 131 (413)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-----~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 131 (413)
++.+..++..+...+.+|.+.+++|.+..+ .+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 100 (408)
T PRK09874 21 LGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVL 100 (408)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHH
Confidence 344555566677888999999999998665 488999999999999999999999999999999999999999999
Q ss_pred HHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhH
Q 015068 132 ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGV 207 (413)
Q Consensus 132 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~ 207 (413)
+.+.++++.+++.|++.|++.+ ..+....++.|.+|+++|+++.++...+..+|..+++.+++.+ +||+.|++.+
T Consensus 101 ~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 179 (408)
T PRK09874 101 MGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITA 179 (408)
T ss_pred HHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999999999999999999765 5677788899999999999999999999999999998888765 8999998887
Q ss_pred HHHHHHHhh-hccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHH
Q 015068 208 LPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMI 286 (413)
Q Consensus 208 ~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
+..++..+. .+++||+++.. ++++ +. +.....+.++++.......
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~----~~~~-----------------------------~~-~~~~~~~~~~~~~~~~~~~ 225 (408)
T PRK09874 180 SVLFLCFLVTLFCIRENFQPV----SKKE-----------------------------ML-HMREVVTSLKNPKLVLSLF 225 (408)
T ss_pred HHHHHHHHHHHHHhccCcccc----cchh-----------------------------hh-HHHHHHHhCcCCchHHHHH
Confidence 766655443 34455542200 0000 00 0001112223322222111
Q ss_pred HHHHHHHHHhcCchhHHhchHHHHhhcCCCCch------hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHH
Q 015068 287 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSN------VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (413)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 360 (413)
...+.... .......+.+.+.++.+.+... ......+++.+++.+..+++.||++||+.+..+.....++.
T Consensus 226 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 302 (408)
T PRK09874 226 VTTLIIQV---ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLL 302 (408)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 11111111 1122333344444443322221 22334466777888889999999999999888777666555
Q ss_pred HHHH
Q 015068 361 FLVS 364 (413)
Q Consensus 361 ~~~~ 364 (413)
+.+.
T Consensus 303 ~~~~ 306 (408)
T PRK09874 303 IPMS 306 (408)
T ss_pred HHHH
Confidence 4433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=216.23 Aligned_cols=295 Identities=16% Similarity=0.172 Sum_probs=203.7
Q ss_pred HhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 015068 55 VALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134 (413)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 134 (413)
.++..+......+..++.++.++++|+++.++.|++.+.+.++++++.++.++++||+|||+.+.++.++++++++++++
T Consensus 38 ~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~al 117 (633)
T TIGR00805 38 LTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSL 117 (633)
T ss_pred HHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhC
Confidence 33455556666788889999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hc---------------------------------------------------ChhHHHHHHHHHhhhhhhhhhhHHHHH
Q 015068 135 SK---------------------------------------------------DSSFLFMGRLLEGFGVGVISYTVPVYI 163 (413)
Q Consensus 135 ~~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i 163 (413)
.+ .+..++++|+++|+|.+..++.+.+++
T Consensus 118 phf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i 197 (633)
T TIGR00805 118 PHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYI 197 (633)
T ss_pred hHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhh
Confidence 53 245677899999999999999999999
Q ss_pred HhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc--------------------------chHHHHHhhHHHHHHHHhhh
Q 015068 164 AEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------------------NWRVLAVLGVLPCTLLIPGL 217 (413)
Q Consensus 164 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--------------------------~w~~~~~~~~~~~~~~~~~~ 217 (413)
.|++|+++|+++++++..+..+|..+|+++++.+ +|+..|++.+++.++..+.+
T Consensus 198 ~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l 277 (633)
T TIGR00805 198 DDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF 277 (633)
T ss_pred hccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887543 16667877777666665555
Q ss_pred ccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhc
Q 015068 218 FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (413)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (413)
+++|++.+....+.+.++.++. .. ....+ +.........++....++.+++++..+...+...+ ...
T Consensus 278 ~~~p~~lp~~~~~~~~~~~~~~--~~-~~~~~------~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~----~~~ 344 (633)
T TIGR00805 278 FFFPKALPKEGKRVNVDVHETE--KL-EKSED------KSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVI----DSL 344 (633)
T ss_pred HhCccccCCcccccchhhhhhh--cc-ccccc------ccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHH----HHH
Confidence 5666542100000000000000 00 00000 00000000111123345666766544443333333 333
Q ss_pred CchhHHhchHHHHhh-cCCCCch--hHHHHHHH-HHHHHHHHHHHHHhhcCC--cHHHHHHhHHHHHHHHH
Q 015068 298 GINGVLFYSSNIFAN-AGISSSN--VATFGLGV-VQVVATGVNTWLMDKAGR--RLLLLISSSGMAASFFL 362 (413)
Q Consensus 298 ~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~-~~~~~~~~~g~l~dr~g~--~~~~~~~~~~~~~~~~~ 362 (413)
....+..|.|.++++ .|+++.. .......+ +.+++.+++|+++||++. |+.+..+.....+++++
T Consensus 345 ~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 345 AFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 355677788888875 5887666 33333343 567899999999999984 45666666555555444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=202.00 Aligned_cols=265 Identities=15% Similarity=0.154 Sum_probs=194.7
Q ss_pred ccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH-----hcCh
Q 015068 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-----SKDS 138 (413)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~ 138 (413)
+......+.+|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+..+. .+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (417)
T PRK10489 31 FGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSL 110 (417)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcH
Confidence 34456667888899999999999999999999999999999999999999999999988887777665542 4678
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHH
Q 015068 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI 214 (413)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~ 214 (413)
+.+++.|+++|++.+...+...+++.|+.|+++|+++.++......+|..+|+.+++.+ +|++.|++.++..++..
T Consensus 111 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~ 190 (417)
T PRK10489 111 LAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITL 190 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 88999999999999888888999999999999999999999999999999999988776 89999988777666666
Q ss_pred hhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHH
Q 015068 215 PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQ 294 (413)
Q Consensus 215 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (413)
+..+.+|++++. +.++++ ..++....++..++++..+...+.......
T Consensus 191 ~~~~~l~~~~~~---~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 238 (417)
T PRK10489 191 LPLLRLPALPPP---PQPREH----------------------------PLRSLLAGFRFLLASPVVGGIALLGGLLTM- 238 (417)
T ss_pred HHHHhCCCCCCC---Cccccc----------------------------chHHHHHHHHHHHcChHHHHHHHHHHHHHH-
Confidence 666666765321 000000 000111123344444443333332222111
Q ss_pred HhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Q 015068 295 QLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 364 (413)
......+.|.+.++ .|.++.. ......+++.+++.++.+++.||.++++.+..+..+.+++.+++.
T Consensus 239 ----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 307 (417)
T PRK10489 239 ----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFG 307 (417)
T ss_pred ----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH
Confidence 12345566777777 5776655 556667788899999999999998777777777776666655543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-24 Score=193.50 Aligned_cols=249 Identities=26% Similarity=0.398 Sum_probs=206.3
Q ss_pred hHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh
Q 015068 56 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135 (413)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 135 (413)
.+..+...++.....+..|.+.+++|.+..+.++..+...++..+++++.|+++||+|||+.+..+.++..++.+...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~ 84 (352)
T cd06174 5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA 84 (352)
T ss_pred HHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh
Confidence 44456666777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHH
Q 015068 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCT 211 (413)
Q Consensus 136 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~ 211 (413)
++++.++++|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+ +||+.+++.++..+
T Consensus 85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (352)
T cd06174 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGL 164 (352)
T ss_pred ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877 79999998877766
Q ss_pred HHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHH
Q 015068 212 LLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLL 291 (413)
Q Consensus 212 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (413)
+..+...+++ +......+.
T Consensus 165 ~~~~~~~~~~-------------------------------------------------------------~~~~~~~~~ 183 (352)
T cd06174 165 LLALLLLFLL-------------------------------------------------------------RLLLLLALA 183 (352)
T ss_pred HHHHHHHHHH-------------------------------------------------------------HHHHHHHHH
Confidence 6655443332 011112222
Q ss_pred HHHHhcCchhHHhchHHHHhhc-CCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcH-HHHHHhHHHHHHHHHHHH
Q 015068 292 VLQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRL-LLLISSSGMAASFFLVSV 365 (413)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~-~~~~~~~~~~~~~~~~~~ 365 (413)
.+...........+.+.+.++. +.++.+ .......++..++.++.+++.||++||+ .+..+..+..++.+.+..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 261 (352)
T cd06174 184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL 261 (352)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 2223333456666777777765 666555 5667778899999999999999999999 888888888888777664
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=198.17 Aligned_cols=246 Identities=15% Similarity=0.193 Sum_probs=195.5
Q ss_pred hhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhc--ChhHHHHHHHHHhhhhhh
Q 015068 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGV 154 (413)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~ 154 (413)
..+++.|..+.+++.+.+..|+.+++++.|++.||+|.|+++..+.++.++++++...+. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 457899999999999999999999999999999999999999999999999999998765 556778999999999999
Q ss_pred hhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhHHHHHHHHhhhcc-ccCchHHHH
Q 015068 155 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFF-IPESPRWLA 228 (413)
Q Consensus 155 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~ 228 (413)
.+|+...+..+|.|+++|++..++...+..+|.+++..+++.+ ||+++|++.+..+++..+++++ ..|+|+. +
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~-h 223 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK-H 223 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc-C
Confidence 9999999999999999999999999999999998887777655 8999999999988887776555 5666652 1
Q ss_pred HcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchh--hhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhch
Q 015068 229 KMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRR--TAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYS 306 (413)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (413)
+.- ..+|.+.+++.+.+++.+ .+.+++++++++..+. ..+..+....+...+..|.
T Consensus 224 ~~i------------------s~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwa----i~~~~f~~~~~~~~l~~y~ 281 (466)
T KOG2532|consen 224 PNI------------------SEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWA----IWISAFGGNWGFYLLLTYL 281 (466)
T ss_pred CCC------------------CHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 111 111222222222222222 4668999998865443 4444455555677888999
Q ss_pred HHHHhhc-CCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015068 307 SNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGR 345 (413)
Q Consensus 307 ~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~ 345 (413)
|.++++. +++..+ +...+..+...+..++.|.++||..+
T Consensus 282 PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~ 323 (466)
T KOG2532|consen 282 PTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTF 323 (466)
T ss_pred hHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999875 776544 77778889999999999999999865
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=194.09 Aligned_cols=266 Identities=12% Similarity=0.082 Sum_probs=186.9
Q ss_pred hccccccchhhHH-HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHH
Q 015068 63 GFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFL 141 (413)
Q Consensus 63 ~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l 141 (413)
.+..+...|.+|. +++++|+|..++|++.+++.++..+++++.|+++||+|||++++.+.++..++.++.+++++++.+
T Consensus 20 ~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (395)
T PRK10054 20 TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLV 99 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444555566554 567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhHHHHHHHHhh-h
Q 015068 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPG-L 217 (413)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~~~~~-~ 217 (413)
+++|++.|.+.+...+...++..|..++++|+++.++.....++|..++|.+++.+ +|+..|++.++..++..+. .
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~ 179 (395)
T PRK10054 100 VLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQ 179 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 99999999888888888999999999999999999999999999999999998876 8999999877766655443 3
Q ss_pred ccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhc
Q 015068 218 FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (413)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (413)
+++||+++. + + ++ +++..+.++.++++..+...+...+..+....
T Consensus 180 ~~~~~~~~~---~-~-~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 224 (395)
T PRK10054 180 IWVQRSEKA---I-A-TE------------------------------TGSVWSPSVLLQDKALLWFTCSGFLASFVSGA 224 (395)
T ss_pred HHHhccccc---c-c-cc------------------------------hhhhhhhhhhccCceehHHHHHHHHHHHHHHH
Confidence 335544210 0 0 00 00001123445555544444333332222211
Q ss_pred CchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Q 015068 298 GINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 364 (413)
.......+.+.. ++.+.+... .......+.........+++.||.++|+.+..+..+..++...+.
T Consensus 225 ~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 292 (395)
T PRK10054 225 FASCISQYVMVV-ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFI 292 (395)
T ss_pred hhhhHHHHHHHh-cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Confidence 111222222222 222332222 333333445556677888999999999998888877777766554
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-23 Score=183.80 Aligned_cols=318 Identities=12% Similarity=0.115 Sum_probs=201.0
Q ss_pred ccccchhhHHHhhhhccCcch-hHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHH
Q 015068 66 CGYSSPTQAEIISDLKLTISE-FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMG 144 (413)
Q Consensus 66 ~~~~~~~~~~i~~~~~~s~~~-~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (413)
+...+.+.|.+.+|+|+|+++ .|.+.+++..+++++.++.|+++||+|.|+++..+.+.+++..++.++++++..+.+.
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~ 121 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLM 121 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566778899999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHh---hHHHHHHHHhhhc
Q 015068 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVL---GVLPCTLLIPGLF 218 (413)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~---~~~~~~~~~~~~~ 218 (413)
|++.|++.|... +...++..|+|+++|+++.++..++..+|.++++++++.+ |||+.+.+ ......+..+..+
T Consensus 122 R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~ 200 (511)
T TIGR00806 122 EVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLAL 200 (511)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999988766 88865543 3334445555677
Q ss_pred cccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHH-HHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhc
Q 015068 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNE-IKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (413)
Q Consensus 219 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (413)
++|..++-+.-+++.+.......+.....++...+..+ .+......-..-...+++..++ +.++...+.+.....
T Consensus 201 ~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n----~~vl~WSlWwa~a~~ 276 (511)
T TIGR00806 201 FLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRN----PQLLLWSLWWVFNSA 276 (511)
T ss_pred hCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcC----cchhhhhHHHHHHhh
Confidence 78865543322221100000000000000000000000 0000000000011122222333 333334444455555
Q ss_pred CchhHHhchHHHHhhcCCCCc-h--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHHHHhccccc
Q 015068 298 GINGVLFYSSNIFANAGISSS-N--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVS 374 (413)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~-~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (413)
+++-+..|...+.++..-+.. . ..-.+..+.+.+.++..|++-.+..+.-.+.++.....-+.+++... .
T Consensus 277 g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~-~------ 349 (511)
T TIGR00806 277 GYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS-Q------ 349 (511)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh-c------
Confidence 667777777777766533221 1 33344455666778888887555533223333322222222222111 1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHhcc
Q 015068 375 EDSRFYSILGILSLVGLVTVVISFSLG 401 (413)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (413)
....+++.++.++|...|.+-
T Consensus 350 ------t~~Iw~~Y~~yvlf~~~y~fl 370 (511)
T TIGR00806 350 ------SHDIWVLYVTYVLFRGIYQFL 370 (511)
T ss_pred ------ccchHHHHHHHHHHHHHHHHH
Confidence 123456666666666666543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-23 Score=188.02 Aligned_cols=266 Identities=15% Similarity=0.139 Sum_probs=185.9
Q ss_pred ccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhh-----chhHHH-HHHHHHHHHHHHHHHHh---c
Q 015068 66 CGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-----GRKGSL-MIAAVPNIIGWLIISFS---K 136 (413)
Q Consensus 66 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~l-~~~~~~~~~~~~~~~~~---~ 136 (413)
....++..|.+.+|+|+|.+++|+..+. .+...+ .+++|+++||+ ||||.+ +.+.++.++.....++. .
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~ 81 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST 81 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 4556778899999999999999999765 455554 99999999998 898874 56777777777777776 3
Q ss_pred ChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c--------hHHHHH
Q 015068 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N--------WRVLAV 204 (413)
Q Consensus 137 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~--------w~~~~~ 204 (413)
+.+.+....++.+++.+...+...+++.|++|+|+|+++.++...+..+|..+++.++..+ + ||..|+
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~ 161 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFF 161 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHH
Confidence 5566777788888888888999999999999999999999999999999999998888554 6 999999
Q ss_pred hhHHHHHHHHhhhcc-ccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhH
Q 015068 205 LGVLPCTLLIPGLFF-IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (413)
+.++..++..+..++ .||+++. . .++ ++ ++++.+..++++++++..++
T Consensus 162 i~ai~~l~~~~~~~~~~~e~~~~----~-~~~----------------------~~----~~~~~~~~~~~~~~~~~~~~ 210 (356)
T TIGR00901 162 WTALLILPGLLVTLFLAKEPQED----A-SVP----------------------KP----LTQAVLKPIREFFQRKNMIQ 210 (356)
T ss_pred HHHHHHHHHHHHHHHhccCCCcc----c-ccc----------------------hh----HHHHHHHHHHHHHHhcCchH
Confidence 888876666554443 4554210 0 000 00 00011223455555554222
Q ss_pred HHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCchh--HHHHHH-HHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHH
Q 015068 284 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNV--ATFGLG-VVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (413)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 360 (413)
.........+.. ........+.+.++++.|+++.+. .....+ +..+++.++++++.||+|+|+.+..+.++.+++.
T Consensus 211 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~ 289 (356)
T TIGR00901 211 ALLLLLLIVLYK-LGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTN 289 (356)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 222222222222 223345556677777778877663 333333 5677899999999999999999888887777665
Q ss_pred HHHHH
Q 015068 361 FLVSV 365 (413)
Q Consensus 361 ~~~~~ 365 (413)
.++..
T Consensus 290 ~~~~~ 294 (356)
T TIGR00901 290 AGFVW 294 (356)
T ss_pred HHHHH
Confidence 55443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-22 Score=185.47 Aligned_cols=258 Identities=13% Similarity=0.155 Sum_probs=182.6
Q ss_pred cccchhhHH-HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHH
Q 015068 67 GYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (413)
Q Consensus 67 ~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 145 (413)
....|.++. +.+++|.|..+.|++.+...+...+.+++.|+++||+|||++++.+.++.+++.+++.++++++.+++.|
T Consensus 27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 106 (400)
T PRK11646 27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSC 106 (400)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 444555554 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhHHHHHHHHh-hhcccc
Q 015068 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIP-GLFFIP 221 (413)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~~~~-~~~~~~ 221 (413)
+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++.+ +||+.|++.++..++..+ ..++.|
T Consensus 107 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~ 186 (400)
T PRK11646 107 ILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLP 186 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999988999999999999999999999999999999999999988877 899999987766555443 333445
Q ss_pred CchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchh
Q 015068 222 ESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 301 (413)
Q Consensus 222 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (413)
|.+. .+. +++.+..+++.++++............+.. ...
T Consensus 187 ~~~~-----~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 226 (400)
T PRK11646 187 AYKL-----STV-------------------------------RTPVREGMTRVLRDKRFVTYVLTLTGYYML----AVQ 226 (400)
T ss_pred cccc-----ccc-------------------------------chhhHHHHHHHHcCchHHHHHHHHHHHHHH----HHH
Confidence 4210 000 000112344455554433322222111111 112
Q ss_pred HHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHH-hhcCCcHHHHHHhHHHHHHHHHHH
Q 015068 302 VLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLM-DKAGRRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 302 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~-dr~g~~~~~~~~~~~~~~~~~~~~ 364 (413)
...+.|.+.++.+.++.+ ......++....+....+++. ||++.++.+..+..+.+++.+++.
T Consensus 227 ~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~ 292 (400)
T PRK11646 227 VMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIG 292 (400)
T ss_pred HHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 334567777776555544 333444444544444445555 456666666667766666665554
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-22 Score=189.58 Aligned_cols=281 Identities=13% Similarity=0.133 Sum_probs=189.9
Q ss_pred hcCchhhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhh-----chhH
Q 015068 42 RDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-----GRKG 116 (413)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~ 116 (413)
+...+++....+.+++ ..++......+.+|...++.|.+.++++.. +.....+ ++.+++|+++||+ |||+
T Consensus 7 ~~~~~~~~~~~~~l~~---~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr 81 (491)
T PRK11010 7 RIFQQPNSAILLILGF---ASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRR 81 (491)
T ss_pred HHHcccHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCch
Confidence 3333444444444444 345555677788898999999999999997 4444444 6899999999999 9998
Q ss_pred H-HHHHHHHHHHHHHHHHHh---cChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHH
Q 015068 117 S-LMIAAVPNIIGWLIISFS---KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL 192 (413)
Q Consensus 117 ~-l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 192 (413)
. +..+.++.+++...+++. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|..+++.
T Consensus 82 ~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~ 161 (491)
T PRK11010 82 GWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGG 161 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6 557777777777777775 467888889999999999999999999999999999999999999999999888876
Q ss_pred hhcc-----cchHHHHHhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchh
Q 015068 193 LGLF-----VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRR 267 (413)
Q Consensus 193 i~~~-----~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
++.. .|||..|++.++..++..+..++.||+++.. . .++ + .++.
T Consensus 162 l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~-~~~-------------~--------------~~~~ 210 (491)
T PRK11010 162 LALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---P-VPK-------------T--------------LEQA 210 (491)
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---c-ccc-------------c--------------hhhh
Confidence 5543 4899999998877666655555577764310 0 000 0 0000
Q ss_pred hhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHH-hhcCCCCch--hHH-HHHHHHHHHHHHHHHHHHhhc
Q 015068 268 TAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIF-ANAGISSSN--VAT-FGLGVVQVVATGVNTWLMDKA 343 (413)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~--~~~-~~~~~~~~~~~~~~g~l~dr~ 343 (413)
...++++.++++..+.......+.... ......+.+.++ ++.|++..+ ... ....++.+++.+++|+++||+
T Consensus 211 ~~~~l~~~~~~~~~~~~ll~~~l~~~~----~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~ 286 (491)
T PRK11010 211 VVAPLRDFFGRNNAWLILLLIVLYKLG----DAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL 286 (491)
T ss_pred HHHHHHHHHcCcCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112344555554444333322222221 122233334444 456887776 332 233468889999999999999
Q ss_pred CCcHHHHHHhHHHHHHHHH
Q 015068 344 GRRLLLLISSSGMAASFFL 362 (413)
Q Consensus 344 g~~~~~~~~~~~~~~~~~~ 362 (413)
++|+.+..+..+.++..+.
T Consensus 287 g~~~~l~i~~~l~~l~~l~ 305 (491)
T PRK11010 287 SLFRALMIFGILQGVSNAG 305 (491)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9998877666555554433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=186.73 Aligned_cols=262 Identities=13% Similarity=0.037 Sum_probs=182.8
Q ss_pred hccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchh----HHHHHHHHHHHHHHHHHHHhcCh
Q 015068 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK----GSLMIAAVPNIIGWLIISFSKDS 138 (413)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~~~ 138 (413)
.+..+.+.|.+|.+.+|+|.|..++|++.+++.++..++++++|+++||+||| +.+.+...+. .......++++
T Consensus 17 ~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 94 (382)
T PRK11128 17 FFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSF 94 (382)
T ss_pred HHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccH
Confidence 34557778999999999999999999999999999999999999999999984 3333222222 22233446889
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHH
Q 015068 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI 214 (413)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~ 214 (413)
+.+++.|++.|++.+...+...+++.++ +++|+++.+.......+|..+||.+++.+ |||..|++.++..++..
T Consensus 95 ~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 95 WLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML 172 (382)
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 9999999999999988899888887776 35677888888888888888888888766 99999987765544444
Q ss_pred hhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHH
Q 015068 215 PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQ 294 (413)
Q Consensus 215 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (413)
+..++.||+++ +++.+ ++.++...+++++++++..+...+...+....
T Consensus 173 ~~~~~~~~~~~----~~~~~----------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 220 (382)
T PRK11128 173 LGQLLRPTIMP----QGESR----------------------------QQESAGWPAWKALLKEPTVWRFLLCVSLLQGS 220 (382)
T ss_pred HHHHccCCCCC----ccccc----------------------------cccccccchHHHHHcChhHHHHHHHHHHHHHH
Confidence 43344454321 00000 00011123466777776655554433333322
Q ss_pred HhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Q 015068 295 QLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 364 (413)
......+.+.+.++.|.++.. .......++.++..+..+++.||+++|+.+..+....+++.+++.
T Consensus 221 ----~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~ 288 (382)
T PRK11128 221 ----HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG 288 (382)
T ss_pred ----hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 223334455666777887655 444455677888889999999999999998888888777666554
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=186.22 Aligned_cols=269 Identities=12% Similarity=0.045 Sum_probs=190.3
Q ss_pred HHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHH----HHHHHHHHHHHHHH
Q 015068 57 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL----MIAAVPNIIGWLII 132 (413)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l----~~~~~~~~~~~~~~ 132 (413)
+..+...+..+...|.+|.+.+|+|.|.+++|++.+++.+...++++++|+++||+|||... ..+..+..+ ..+
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFS 88 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHH
Confidence 33444455667888999999999999999999999999999999999999999999985433 222222222 234
Q ss_pred HHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHH
Q 015068 133 SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVL 208 (413)
Q Consensus 133 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~ 208 (413)
..+++++.+++.|+++|.+.+...|...++..++ +++|++..+....+.++|..++|.+++.+ |||..|++...
T Consensus 89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~ 166 (382)
T TIGR00902 89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTA 166 (382)
T ss_pred HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 4678999999999999999888889888887765 46789999999999999999999988776 99999887655
Q ss_pred HHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHH
Q 015068 209 PCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (413)
Q Consensus 209 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (413)
..++..+.. .++|+++. +++ ++ +++.+...+.+++++++..+...+..
T Consensus 167 ~~~~~~~~~-~~~~~~~~---~~~-~~---------------------------~~~~~~~~~~~~~l~~~~~~~~l~~~ 214 (382)
T TIGR00902 167 GLAFMLIGF-LIKPTIPP---KDA-IP---------------------------EDESQGDSAFIALLKNPMNLRFLAAV 214 (382)
T ss_pred HHHHHHHHH-HcCCCCCC---Ccc-cc---------------------------ccccccchhHHHHHcChHHHHHHHHH
Confidence 433333222 33333110 000 00 00001122345666666555444433
Q ss_pred HHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHH
Q 015068 289 GLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (413)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 365 (413)
.+.... ......+.+.++++.|.++.. .......++.+++....+++.||+++|+.+..+.+...+...+++.
T Consensus 215 ~l~~~~----~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~ 289 (382)
T TIGR00902 215 CLIQGA----HAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGA 289 (382)
T ss_pred HHHHHH----HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 333322 334455667777888887766 5555667888888999999999999999999999888888777654
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-22 Score=182.34 Aligned_cols=270 Identities=16% Similarity=0.119 Sum_probs=190.5
Q ss_pred HHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhh-----chhH-HHHHHHHHHHHHHHH
Q 015068 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-----GRKG-SLMIAAVPNIIGWLI 131 (413)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~~~~~ 131 (413)
.++.+++..+.....+|.+.++.|+|.+++|++..+... .+..+++|+++||+ |||| .++.+.++.+++..+
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA 84 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence 345567777888889999999999999999999777765 58999999999999 8875 688888888888888
Q ss_pred HHHhc---ChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhcc-----cchHHHH
Q 015068 132 ISFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-----VNWRVLA 203 (413)
Q Consensus 132 ~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~-----~~w~~~~ 203 (413)
.++.+ +++.+++..++.++..+...+...+++.|++|+++|+++.++...+..+|..+++.++.. .|||..|
T Consensus 85 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f 164 (402)
T PRK11902 85 MAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTY 164 (402)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHH
Confidence 77763 577788888888888889999999999999999999999999999999998888775543 3899999
Q ss_pred HhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhH
Q 015068 204 VLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (413)
++.++..++..+..++.||+++. +++.++ .+++....++++++++..+.
T Consensus 165 ~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~ 213 (402)
T PRK11902 165 LLMAGLMLAGALTTLWAPEPEVP---ARPPRS----------------------------LGEAVVGPLRDFFSRRGAWA 213 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCccc---ccccch----------------------------hHHHHHHHHHHHHhCcCHHH
Confidence 98777666555555556765431 000000 00011234566777766655
Q ss_pred HHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCchh--HHHHHH-HHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHH
Q 015068 284 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNV--ATFGLG-VVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (413)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 360 (413)
..+...+....... ......+.+.++.|+++.+. .....+ ++.+++.++.+++.||+++|+.+..+.....+..
T Consensus 214 ~l~~~~l~~~~~~~---~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~ 290 (402)
T PRK11902 214 LLLLIVLYKLGDAF---AGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSN 290 (402)
T ss_pred HHHHHHHHHhHHHH---HHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 55443333322211 11122233444568876653 222333 4578899999999999999998776666655554
Q ss_pred HHH
Q 015068 361 FLV 363 (413)
Q Consensus 361 ~~~ 363 (413)
+.+
T Consensus 291 l~~ 293 (402)
T PRK11902 291 LGY 293 (402)
T ss_pred HHH
Confidence 433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-21 Score=181.82 Aligned_cols=169 Identities=17% Similarity=0.281 Sum_probs=135.4
Q ss_pred hhhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHH
Q 015068 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (413)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 125 (413)
++.+..+...++......+.....+..++.+..|+|-+ ....|+.+...++.+++.++.|+++|.||||.+++.+.++.
T Consensus 40 ~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~ 118 (599)
T PF06609_consen 40 PRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLG 118 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Confidence 34444444444444445555556667788999999954 77899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHH
Q 015068 126 IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRV 201 (413)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~ 201 (413)
.+|.++++.++|...++.+..+.|+|.|.... ....++|..|.|.|+...++...........++.++..+ +|||
T Consensus 119 vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw 197 (599)
T PF06609_consen 119 VVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRW 197 (599)
T ss_pred HhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcch
Confidence 99999999999999999999999999877764 455689999999998887776665555555566666444 8999
Q ss_pred HHHhhHHHHHHHHhh
Q 015068 202 LAVLGVLPCTLLIPG 216 (413)
Q Consensus 202 ~~~~~~~~~~~~~~~ 216 (413)
.|++.++...+.++.
T Consensus 198 ~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 198 IFYIFIIWSGIALVL 212 (599)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988876665543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-21 Score=166.57 Aligned_cols=274 Identities=14% Similarity=0.113 Sum_probs=212.0
Q ss_pred HHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 015068 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII 132 (413)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 132 (413)
..+....++.++......+.+|++++.|++|..|.+++...++.++.+.+++.|++.+|+|+|+.++.++.++++++.+.
T Consensus 16 v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF 95 (422)
T COG0738 16 VLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALF 95 (422)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33444456778888888999999999999999999999999999999999999999999999999999999999999998
Q ss_pred H---HhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc------------
Q 015068 133 S---FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------------ 197 (413)
Q Consensus 133 ~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------------ 197 (413)
. ...++..++++-++.|.|.+...+..+.++....++++..+.+++.+...++|.+++|++++.+
T Consensus 96 ~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~ 175 (422)
T COG0738 96 WPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAA 175 (422)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHH
Confidence 5 5678999999999999999999999999999999998889999999999999999999998654
Q ss_pred -----------chHHHHHhhHHHHHHHHhhhcc--ccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhc
Q 015068 198 -----------NWRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASS 264 (413)
Q Consensus 198 -----------~w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (413)
.|+++|...+...+++.+.... .|+.+.- .++.
T Consensus 176 ~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~----------------------------------~~~~ 221 (422)
T COG0738 176 QILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA----------------------------------APSL 221 (422)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc----------------------------------cccc
Confidence 3677777666555554443333 3443210 0000
Q ss_pred chhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHh
Q 015068 265 SRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMD 341 (413)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d 341 (413)
.+.......++++++..+...+...++... ......|.+.++.+ .|++..+ .......++.++|++++.++.+
T Consensus 222 ~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~----Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~ 297 (422)
T COG0738 222 GASGSAGLSSLFQNKHLRLGVLAIFLYVGA----EVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMS 297 (422)
T ss_pred cccccchHHHHHhChHHHHHHHHHHHHHhH----HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111456777777666666655555554 45666777777777 5776665 6666678888999999999999
Q ss_pred hcCCcHHHHHHhHHHHHHHHHHH
Q 015068 342 KAGRRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 342 r~g~~~~~~~~~~~~~~~~~~~~ 364 (413)
|+...|.+....+...+-++...
T Consensus 298 ~~~~~k~Laf~a~~~ill~~~~~ 320 (422)
T COG0738 298 RIKPEKYLAFYALIAILLLLAVA 320 (422)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999988776655444444333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-21 Score=176.73 Aligned_cols=254 Identities=11% Similarity=0.135 Sum_probs=161.7
Q ss_pred ccccccchhhHH-HhhhhccCcchhHHHHHHHHH-HHHHHHHhHHHHHhhhchhHHH-HHHHHHHHHHHHHHHHhcChhH
Q 015068 64 FTCGYSSPTQAE-IISDLKLTISEFSIFGSLANV-GAMVGAIASGQIAEYIGRKGSL-MIAAVPNIIGWLIISFSKDSSF 140 (413)
Q Consensus 64 ~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~ 140 (413)
+......|.+|. +.+++|.+.+++|++.+...+ +..++.++.++ +||+||||.+ ..+.++.+++..+.+++++++.
T Consensus 29 ~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (393)
T PRK15011 29 IAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFV 107 (393)
T ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344445566665 678999999999999876655 55556655555 9999999875 4556666778888889999998
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcc--hhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHH
Q 015068 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR--GSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI 214 (413)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~ 214 (413)
+++.+.+.|...+...+....++.|+.++++| +...++.+.+.++|..+||.+++.+ |||..|++.++..++..
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~ 187 (393)
T PRK15011 108 LLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCG 187 (393)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 87766555555557788888888888776655 3445788888889999998888665 99999998877666554
Q ss_pred h-hhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHH
Q 015068 215 P-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVL 293 (413)
Q Consensus 215 ~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (413)
+ ..+++||.++. +++.+ ++ .+ ..++ +++............+.
T Consensus 188 ~~~~~~~~~~~~~---~~~~~---------------------------~~-~~----~~~~--~~~~~~~~~~~~~~~~~ 230 (393)
T PRK15011 188 VMVWLFLPSMRKE---LPLAT---------------------------GT-LE----APRR--NRRDTLLLFVICTLMWG 230 (393)
T ss_pred HHHHhhcCccCCC---Ccccc---------------------------cc-cc----cccc--ccccHHHHHHHHHHHHH
Confidence 4 44557776420 00000 00 00 0000 00111111111111111
Q ss_pred HHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHH
Q 015068 294 QQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (413)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 359 (413)
.......+.|.++++ .++++.+ .......+..+++.++.|+++||++||+.+..+.....+.
T Consensus 231 ----~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~ 295 (393)
T PRK15011 231 ----TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCF 295 (393)
T ss_pred ----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 122334456666654 5776655 3344445667788999999999999999877665544443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-22 Score=184.50 Aligned_cols=309 Identities=15% Similarity=0.154 Sum_probs=206.3
Q ss_pred hhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHH
Q 015068 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (413)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 126 (413)
+-|.+++...+......-....++...+.++++++.+.++++|+.++......+..++.+.+.||+|.|.+.+.|.++.+
T Consensus 43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence 34455444444443332233445577889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChhHHHHH-HHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHH
Q 015068 127 IGWLIISFSKDSSFLFMG-RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRV 201 (413)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~ 201 (413)
+|.++.+++++++++++. -++.|+|.|..+.....++..+|+ |+|+.+.|+...+.++|.++-|.+...+ |||+
T Consensus 123 ~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~ 201 (509)
T KOG2504|consen 123 LGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRG 201 (509)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHH
Confidence 999999999999988886 899999999999999999998776 7899999999999999998888887766 9999
Q ss_pred HHHhhHHHHHHHHhhhccc-cCchHHHHH--cCChH------HHHHHHHHHh-CCCcchH----HHHHHHHHHHh-hcch
Q 015068 202 LAVLGVLPCTLLIPGLFFI-PESPRWLAK--MGMTE------DFESSLQVLR-GFDTDIS----IEVNEIKRSVA-SSSR 266 (413)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~-~e~~~~~~~--~~~~~------~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~-~~~~ 266 (413)
.+++.+.+.+-.++....+ |.++..... ++.++ .......+.. ..+.... .+....++..+ ....
T Consensus 202 ~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (509)
T KOG2504|consen 202 ALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNS 281 (509)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCcccccc
Confidence 9988776665555544443 322221000 00000 0000000000 0000000 00000000000 0100
Q ss_pred hhhhhH----HHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHH
Q 015068 267 RTAIRF----AELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLM 340 (413)
Q Consensus 267 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~ 340 (413)
..+... .++++++. ++...+.......++.....+++.+.++.|+++.+ ......++..++++++.|++.
T Consensus 282 ~~~~~~~~~d~~ll~~~~----fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~la 357 (509)
T KOG2504|consen 282 PLQAFLSMLDLSLLKDPK----FLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLA 357 (509)
T ss_pred chhhhhhhhhHHHHcCch----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhc
Confidence 111111 35555533 33333444444445667778888888888887766 777788999999999999999
Q ss_pred hhcCCcHHHH--HHhHHHHHHH
Q 015068 341 DKAGRRLLLL--ISSSGMAASF 360 (413)
Q Consensus 341 dr~g~~~~~~--~~~~~~~~~~ 360 (413)
|+...++..+ ++.+..+++.
T Consensus 358 D~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 358 DKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred CccccchHHHHHHHHHHHHHHH
Confidence 9988544433 3444444443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-21 Score=177.27 Aligned_cols=268 Identities=15% Similarity=0.083 Sum_probs=170.7
Q ss_pred ccccccchhhHHH-hhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH---Hhc---
Q 015068 64 FTCGYSSPTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---FSK--- 136 (413)
Q Consensus 64 ~~~~~~~~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~--- 136 (413)
.......|.+|.. .+++|.++.+.+++.+++.++..+++++.|+++||+|||+.++.+....+++..... +.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (396)
T TIGR00882 16 FIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQ 95 (396)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3445566777664 567899999999999999999999999999999999999999887766655443321 121
Q ss_pred --ChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhHHHHH
Q 015068 137 --DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCT 211 (413)
Q Consensus 137 --~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~ 211 (413)
.+..+++.|++.|++.+...+....+..|..+ +++...+......++|..+++.+++.+ +||+.|++.+...+
T Consensus 96 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~ 173 (396)
T TIGR00882 96 SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFAL 173 (396)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHH
Confidence 23345667888999888888888877777543 334566666677778888888887765 89999998877766
Q ss_pred HHHhhhcc-ccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHH
Q 015068 212 LLIPGLFF-IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (413)
Q Consensus 212 ~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (413)
+..+..+. .||+|+.. + .++ ....++++.+.++.+++++++..+...+....
T Consensus 174 ~~~~~~~~~~~~~~~~~---~-~~~-----------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 226 (396)
T TIGR00882 174 ILMLLLMFAKPKAPSSA---T-VAN-----------------------ALGANASAFSLKLALELFRQRKFWMFVLYVVG 226 (396)
T ss_pred HHHHHHHHhCCCCchhh---h-hhc-----------------------ccccccCCCCHHHHHHHHcCCcHHHHHHHHHH
Confidence 66554444 34432200 0 000 00000111122345666766654433332222
Q ss_pred HHHHHhcCchhHHhchHHHHhhc----CCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Q 015068 291 LVLQQLSGINGVLFYSSNIFANA----GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 364 (413)
.... +.....+.+.++++. +.+... .......+...++.+..+++.||+++|+.+.++..+.++...+..
T Consensus 227 ~~~~----~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~ 302 (396)
T TIGR00882 227 VACV----YDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSS 302 (396)
T ss_pred HHHH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 2211 122222334444332 332222 445555677788889999999999999999888887777665543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=201.87 Aligned_cols=266 Identities=14% Similarity=0.062 Sum_probs=181.7
Q ss_pred chhhHHHhhhhccCcc--hhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHH---HHhcChhHHHHH
Q 015068 70 SPTQAEIISDLKLTIS--EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFSKDSSFLFMG 144 (413)
Q Consensus 70 ~~~~~~i~~~~~~s~~--~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~ 144 (413)
..+.+.+..+++.+.+ ..+++.+++.+++.++++++|+++||+|||++++.+.++..++.++. ..+++++.++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (1146)
T PRK08633 30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAV 109 (1146)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 3444556666766543 47999999999999999999999999999999999887666555543 345789999999
Q ss_pred HHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-c------------hHHHHHhhHH-HH
Q 015068 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-N------------WRVLAVLGVL-PC 210 (413)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-~------------w~~~~~~~~~-~~ 210 (413)
|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+.+++.+ . |++.+.+..+ ..
T Consensus 110 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (1146)
T PRK08633 110 TFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVA 189 (1146)
T ss_pred HHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888765 1 3333333332 23
Q ss_pred HHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHH
Q 015068 211 TLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (413)
Q Consensus 211 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (413)
++.++..+.+||.++....+.+.++ ..........++.+++++..+..++...+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (1146)
T PRK08633 190 VLGLIFAYRLPKVPAAAPEVFDKKK--------------------------YLFPKLLWRNLKLLRSDRVLWLAIIGLSY 243 (1146)
T ss_pred HHHHHHHhcCcCCCCCCcccccccc--------------------------cccHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3333445556776542110000000 00001112234555555554444433333
Q ss_pred HHHHHhcCchhHHhchHHHHh-hcCCCCc-h--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHH
Q 015068 291 LVLQQLSGINGVLFYSSNIFA-NAGISSS-N--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (413)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 365 (413)
.++.. .....+.+.++. ..|.+.. . +.....+++.+++.++.+++.||+++++.+.++.++++++.+++..
T Consensus 244 ~~~~~----~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 318 (1146)
T PRK08633 244 FWFIS----QLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPT 318 (1146)
T ss_pred HHHHH----HHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHH
Confidence 33322 233344455554 4588766 4 5666678888999999999999999998888777777766665553
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-21 Score=177.08 Aligned_cols=270 Identities=14% Similarity=0.066 Sum_probs=159.2
Q ss_pred cccchhhHH-HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH---HhcC-----
Q 015068 67 GYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---FSKD----- 137 (413)
Q Consensus 67 ~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~----- 137 (413)
+...|.+|. +.+++|+|..+.|++.+++.++..+++++.|+++||+|||++++.+..+.+++..... .++.
T Consensus 27 ~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (420)
T PRK09528 27 SSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNI 106 (420)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566665 4556999999999999999999999999999999999999999887666554433221 1111
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhHHHHHHHH
Q 015068 138 SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLI 214 (413)
Q Consensus 138 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~~~ 214 (413)
.....+++++.|.+.....+....+..+ . .+++++.++.......+|..+++.+++.+ +|++.|++.++..++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~ 184 (420)
T PRK09528 107 LLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILL 184 (420)
T ss_pred HHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHH
Confidence 1112223344443333333333333322 2 24567777888888888888888888766 89999998877766665
Q ss_pred hhhccc-cCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHH
Q 015068 215 PGLFFI-PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVL 293 (413)
Q Consensus 215 ~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (413)
+..++. +|+++....+ ++ +.++++.......++.++++..+...+.......
T Consensus 185 ~~~~~~~~~~~~~~~~~---~~------------------------~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~ 237 (420)
T PRK09528 185 VLLFFAKPDAPSTAKVA---NA------------------------LGANASAVSLKDALALLKLPKFWFLVLYVIGVAC 237 (420)
T ss_pred HHHhcccccccchhhhc---cc------------------------hhcccccccHHHHHHHccCCCeEeehHHHHHHHH
Confidence 555444 3332200000 00 0000011111223445555554443332222222
Q ss_pred HHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHH
Q 015068 294 QQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (413)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 365 (413)
.........+.|....+.+.+.+... .......+...++.++.|++.||+++|+.+..+..+..++.+++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~ 311 (420)
T PRK09528 238 FYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF 311 (420)
T ss_pred HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh
Confidence 11111112233333333333443333 4455556777899999999999999999988888877777666553
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-20 Score=174.98 Aligned_cols=157 Identities=13% Similarity=0.135 Sum_probs=128.8
Q ss_pred cchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh------cChhHHH
Q 015068 69 SSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS------KDSSFLF 142 (413)
Q Consensus 69 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~l~ 142 (413)
++...|.+++++|+|.++.+++.++. .....++++.|++.||+|+|+++.++.+++.++.++++++ ++++.+.
T Consensus 46 fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~ 124 (591)
T PTZ00207 46 FNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLS 124 (591)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 34566779999999999999998874 4456778889999999999999999999999999999997 6899999
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHH-HHHhhccc--chHHHHHhhHHHHHHHHh-hhc
Q 015068 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIML-AYLLGLFV--NWRVLAVLGVLPCTLLIP-GLF 218 (413)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~i~~~~--~w~~~~~~~~~~~~~~~~-~~~ 218 (413)
+.|++.|+|.+...+.....+.+++| ++||++.++...+.++|..+ +++...++ +|+..|++.++..++..+ ...
T Consensus 125 l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 125 VYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIV 203 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999997 78999999999999999875 55555555 788888776666555544 333
Q ss_pred cc--cCchHHH
Q 015068 219 FI--PESPRWL 227 (413)
Q Consensus 219 ~~--~e~~~~~ 227 (413)
++ |+.+++.
T Consensus 204 ~vr~p~~~~~~ 214 (591)
T PTZ00207 204 FMRLPPFHLTG 214 (591)
T ss_pred heeCCcchhhc
Confidence 33 4444443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-20 Score=173.03 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=122.4
Q ss_pred hhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHhcChhH-HHHHHHHHh
Q 015068 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDSSF-LFMGRLLEG 149 (413)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G 149 (413)
....+.+++|.+.++.+++.+.+.....+..+++|+++|| +||||+++.+.+++.++.++++++++... ++++|+++|
T Consensus 37 l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ 116 (489)
T PRK10207 37 LAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIA 116 (489)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 3445678899999999999999999999999999999999 99999999999999999999999887554 457899999
Q ss_pred hhhhhhhhhHHHHHHhcCCCC--cchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHH
Q 015068 150 FGVGVISYTVPVYIAEIAPQN--MRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCT 211 (413)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~ 211 (413)
+|.|...+...+++.|.+|++ +|+++++++..+.++|..+||.+++++ |||+.|++..+..+
T Consensus 117 ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~ 184 (489)
T PRK10207 117 VGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLI 184 (489)
T ss_pred hccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 999999999999999999877 457789999999999998888887766 99999998654333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.7e-21 Score=197.70 Aligned_cols=278 Identities=14% Similarity=0.057 Sum_probs=185.2
Q ss_pred HhHHHHhhhccccccchh-hHHHhhhhccCc-chhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHH---HHHHHHHHH
Q 015068 55 VALGPIQFGFTCGYSSPT-QAEIISDLKLTI-SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI---AAVPNIIGW 129 (413)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~-~~~i~~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~ 129 (413)
..++.+.+++....+... ...+..+.+.+. ...++..+++.+.+.+.++++|+++||+|||+++.. ..++..+..
T Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~ 99 (1140)
T PRK06814 20 QFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALA 99 (1140)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 334444444433332222 224444444433 347888999999999999999999999999997643 223333333
Q ss_pred HHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHh
Q 015068 130 LIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVL 205 (413)
Q Consensus 130 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~ 205 (413)
+.+...++++.++++|+++|++.+...|+..+++.|++++++|++++++.+++..+|.++||.+++.+ +|++.|+.
T Consensus 100 ~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 100 IYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 33344589999999999999999999999999999999999999999999999999999999999887 89999855
Q ss_pred hHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHH
Q 015068 206 GVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
.++..++.++..+++|+++.- .++...+ .....+....++.+.+++..+...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1140)
T PRK06814 180 LMGIAVLGWLASLFIPKTGNA--APDLKID--------------------------RNIIRSTITLLKYAKADKRIWLAI 231 (1140)
T ss_pred HHHHHHHHHHHHhhCCCCCCC--CCCCeec--------------------------cchHHHHHHHHHHHhcCchHHHHH
Confidence 555555555566666665320 0000000 000001112355566666555554
Q ss_pred HHHHHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHH
Q 015068 286 IGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (413)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 362 (413)
+...+.++. ...+..+.|.++++ .|.++.. ......+++.++|.+..+++.|+..+++.+..+.++.+++.+.
T Consensus 232 ~~~~~~~~~----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 307 (1140)
T PRK06814 232 LGISWFWLV----GAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLD 307 (1140)
T ss_pred HHHHHHHHH----HHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHH
Confidence 444333332 23344556776665 4776655 6667778899999999999998887777666665555554443
Q ss_pred HH
Q 015068 363 VS 364 (413)
Q Consensus 363 ~~ 364 (413)
+.
T Consensus 308 l~ 309 (1140)
T PRK06814 308 LA 309 (1140)
T ss_pred HH
Confidence 33
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-22 Score=172.82 Aligned_cols=230 Identities=14% Similarity=0.115 Sum_probs=174.8
Q ss_pred hccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhH
Q 015068 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTV 159 (413)
Q Consensus 80 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 159 (413)
.+-+++++|++.+...+.+.+.+++.|.+.||+|+|..+++|++++...++++++.++++.++++|.+||+|.+.....+
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 34466789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCc-chhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhhccccCchHHHHHcCChH
Q 015068 160 PVYIAEIAPQNM-RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTE 234 (413)
Q Consensus 160 ~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 234 (413)
.++++|.+|+++ |++++|+.-.+.++|..+||.+|+.+ |.+.+|++.+++.++-..+.+++-|..+
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~--------- 251 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE--------- 251 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc---------
Confidence 999999998765 79999999999999999999999988 9999999999988888776666433211
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhhcC
Q 015068 235 DFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAG 314 (413)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 314 (413)
.+++...+...++++++++.............. .....-+.+..-..++..
T Consensus 252 --------------------------~~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~---~lafLePtlslwm~e~m~ 302 (464)
T KOG3764|consen 252 --------------------------MDPDSTEQGTPMWSLLMDPYILLIAGAITFSNS---SLAFLEPTLSLWMLETMF 302 (464)
T ss_pred --------------------------cCccccccCccHHHHHhCchHhhhhcchhhccc---hHHHhCcccHHHHHHhcc
Confidence 000122233456677777654433222222211 111111222222333334
Q ss_pred CCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcH
Q 015068 315 ISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRL 347 (413)
Q Consensus 315 ~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 347 (413)
.+..+ ..+....+...++..+.|.+.||++..+
T Consensus 303 ~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~ 337 (464)
T KOG3764|consen 303 TPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLR 337 (464)
T ss_pred CCCcceeeeecccccchhccCchHHHHHHhcCchh
Confidence 22212 6677778899999999999999999433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-19 Score=151.35 Aligned_cols=275 Identities=20% Similarity=0.198 Sum_probs=214.1
Q ss_pred hHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHH
Q 015068 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (413)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 128 (413)
+..+..+.+..+.-.-..+...|.++++++|+|+|.+..|++.++..+...+.+++..+++.|+|.++.+..++++.++|
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44444444555666667788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHH
Q 015068 129 WLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLA 203 (413)
Q Consensus 129 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~ 203 (413)
.++-... +...++.+-.+.|.|.+......++.+.+.+| |+-+..+++|....++|..+++.++-.+ +||...
T Consensus 91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL 168 (395)
T COG2807 91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL 168 (395)
T ss_pred HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence 9998877 77888899999999999999999999999998 6689999999999999888776665443 799998
Q ss_pred HhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhH
Q 015068 204 VLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (413)
.+-+.++++.++.++--...++ ....+.+..+...+++++.-+.
T Consensus 169 ~~WAl~allAl~~WlPq~~r~~------------------------------------~~~~~~~~~~~~~vw~~~~aW~ 212 (395)
T COG2807 169 GFWALLALLALLIWLPQALREQ------------------------------------AASIATKLVSVRKVWRSPLAWQ 212 (395)
T ss_pred HHHHHHHHHHHHHHhhhccccc------------------------------------ccccccccccccccccCchhHH
Confidence 8888777777665544211100 0011112222234566655555
Q ss_pred HHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhc-CCcHHHHHHhHHHHHHH
Q 015068 284 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKA-GRRLLLLISSSGMAASF 360 (413)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 360 (413)
..+.+ ..+...++.+..|.|.++.+.|++..+ .......+..++.++....+.+|. ++|+..+.....+.++.
T Consensus 213 vtLfm----GlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~ 288 (395)
T COG2807 213 VTLFM----GLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL 288 (395)
T ss_pred HHHHH----HhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 44443 344445678889999999999998777 667777889999999999999975 45666666677777777
Q ss_pred HHHHH
Q 015068 361 FLVSV 365 (413)
Q Consensus 361 ~~~~~ 365 (413)
+.+.+
T Consensus 289 ~G~~~ 293 (395)
T COG2807 289 VGLLL 293 (395)
T ss_pred HHHHH
Confidence 77663
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-19 Score=165.70 Aligned_cols=261 Identities=11% Similarity=0.024 Sum_probs=168.1
Q ss_pred cccccc-chhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhch-hHHHHHHHHHHHHHHHHHHHhcChhHH
Q 015068 64 FTCGYS-SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLIISFSKDSSFL 141 (413)
Q Consensus 64 ~~~~~~-~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~l 141 (413)
...+.. .+..+.+.+++|++..++|++.+++.++..++++++|.++||+|| |+++.++.++..++..+..+.++++.+
T Consensus 16 ~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (418)
T TIGR00889 16 FIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGM 95 (418)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 334444 344556778899999999999999999999999999999999965 778888888888888888899999999
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHH--------hcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHH
Q 015068 142 FMGRLLEGFGVGVISYTVPVYIA--------EIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLP 209 (413)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~ 209 (413)
++.|++.|++.+...+...++.. |......|.+..|. +|..+++.+++.+ .|+ +|++.++.
T Consensus 96 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~~~~~~-~f~~~~~~ 168 (418)
T TIGR00889 96 FPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAVSLLDIELSNI-QLYITAGS 168 (418)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHHHHhcccchhH-HHHHHHHH
Confidence 99999999987777666555432 22222334454442 4555555555444 344 35555555
Q ss_pred HHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHH
Q 015068 210 CTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIG 289 (413)
Q Consensus 210 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (413)
.++..+..+++||+|+. +++++. + .++....+.++.++++..+..++...
T Consensus 169 ~~~~~~~~~~~~e~~~~---~~~~~~--------------------~-------~~~~~~~~~~~~~k~~~~~~~~~~~~ 218 (418)
T TIGR00889 169 SALLGVFALTLPDIPVA---KSTAKM--------------------S-------IKVMLGLDAFILFKNKRMAIFFFFSM 218 (418)
T ss_pred HHHHHHHHhcCCCCCCC---cccccc--------------------C-------HHHHhhhhHHHHhcCCCeeeHHHHHH
Confidence 55555555677876531 000000 0 00001112344555655444444333
Q ss_pred HHHHHHhcCchhHHhchHHHHhhcCCCC--------c--hhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHH
Q 015068 290 LLVLQQLSGINGVLFYSSNIFANAGISS--------S--NVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (413)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 359 (413)
+.... ......+.+.+.++.|.++ . ........+..+++.+..+++.||+|+|+.+..+.++..++
T Consensus 219 ~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~ 294 (418)
T TIGR00889 219 LLGAP----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALR 294 (418)
T ss_pred HHHhH----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 32221 1223344455666655443 1 25556667788889999999999999999999998888777
Q ss_pred HHHHHH
Q 015068 360 FFLVSV 365 (413)
Q Consensus 360 ~~~~~~ 365 (413)
..++..
T Consensus 295 ~~l~~~ 300 (418)
T TIGR00889 295 FGFFAY 300 (418)
T ss_pred HHHHHH
Confidence 665553
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=159.93 Aligned_cols=115 Identities=17% Similarity=0.299 Sum_probs=106.4
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHH
Q 015068 82 LTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPV 161 (413)
Q Consensus 82 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 161 (413)
.+....|.+.+.|.+++.+.++.+|.++||+|||+++..+.+..++..++.+.++|+..++++|++.|+..|-. .+..+
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rA 143 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRA 143 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHH
Confidence 34456799999999999999999999999999999999999999999999999999977777799999988655 46789
Q ss_pred HHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 162 YIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 162 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
+++|..++|+|+++++..+..+++|.++||.+|+++
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyl 179 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYL 179 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhhcchhhhHH
Confidence 999999999999999999999999999999999987
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-18 Score=161.86 Aligned_cols=269 Identities=14% Similarity=0.158 Sum_probs=190.1
Q ss_pred ccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh-----cCh
Q 015068 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----KDS 138 (413)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~ 138 (413)
+...+.....+.+..+..-|+..++++.++..+...+.++++|.++||++||++++.+.++.++..+..++. .+.
T Consensus 24 lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~ 103 (524)
T PF05977_consen 24 LGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSP 103 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCH
Confidence 333444456666777777889999999999999999999999999999999999999988777655544432 378
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHH
Q 015068 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI 214 (413)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~ 214 (413)
+.+++.-++.|++.+...|+..+++.|..|+++...+.++.+...++...+||.+++.+ |-.+.|.+.++..++.+
T Consensus 104 ~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i 183 (524)
T PF05977_consen 104 WLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISI 183 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999876 67788888776555544
Q ss_pred hhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHH
Q 015068 215 PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQ 294 (413)
Q Consensus 215 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (413)
.....++.+++ ++...+ ++-.+.-+..++-+.+++..+..++...+..+.
T Consensus 184 ~~l~~~~~~~~---~~~~~~---------------------------e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~ 233 (524)
T PF05977_consen 184 LALLRWKPPPP---PSSLPR---------------------------ERFFSALREGLRYVRSSPPLRSVLLRSFLFNLF 233 (524)
T ss_pred HHHHHcccccc---ccccch---------------------------hhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 44333332211 000000 000111122333344444443333322222221
Q ss_pred HhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHH
Q 015068 295 QLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (413)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 366 (413)
........|.+.++ .|.++.. +.....+++.++|.++.+++.+|+++++++..+.+..+++++.+++.
T Consensus 234 ----~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~ 304 (524)
T PF05977_consen 234 ----ASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS 304 (524)
T ss_pred ----hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence 12233345666554 3665555 67778899999999999999999999998888888877777766643
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-18 Score=162.43 Aligned_cols=156 Identities=13% Similarity=0.134 Sum_probs=134.4
Q ss_pred HhhhccccccchhhHHH-hhh--hccCcchhHHHHHHHHHHHHHHHHhHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHh
Q 015068 60 IQFGFTCGYSSPTQAEI-ISD--LKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFS 135 (413)
Q Consensus 60 ~~~~~~~~~~~~~~~~i-~~~--~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~ 135 (413)
+...+......+.+|.+ .++ +|.+..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++
T Consensus 20 ~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~ 99 (475)
T TIGR00924 20 LWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS 99 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc
Confidence 33444545555666665 445 89999999999999999999999999999999 899999999999999999999999
Q ss_pred cChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCc---chhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHH
Q 015068 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM---RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVL 208 (413)
Q Consensus 136 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~ 208 (413)
++++.++++|++.|+|.|...+...++++|++|+++ |+++.+++..+.++|..+||.+++.+ +||+.|++.++
T Consensus 100 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~ 179 (475)
T TIGR00924 100 IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAV 179 (475)
T ss_pred ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 998899999999999999999999999999998754 88899999999999999999998776 89999988775
Q ss_pred HHHHHHh
Q 015068 209 PCTLLIP 215 (413)
Q Consensus 209 ~~~~~~~ 215 (413)
..++..+
T Consensus 180 ~~~~~~l 186 (475)
T TIGR00924 180 GMVIGLL 186 (475)
T ss_pred HHHHHHH
Confidence 5444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=167.20 Aligned_cols=257 Identities=15% Similarity=0.100 Sum_probs=172.1
Q ss_pred hhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhh----hchhH-HHHHHHHHHHHHHHHHHHhcC------hhH
Q 015068 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRKG-SLMIAAVPNIIGWLIISFSKD------SSF 140 (413)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~ 140 (413)
..+.+.+++|+++.++|++.++..+..++..|+.|+++|| +|||| .++.+....+++.+++...++ ...
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY 101 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 3445778899999999999999999999999999999997 68754 566788888888888877664 345
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhcC-CCCcchhHhhHHHHHHHHHHHHHHHhh-----------cccchHHHHHhhHH
Q 015068 141 LFMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLG-----------LFVNWRVLAVLGVL 208 (413)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~-----------~~~~w~~~~~~~~~ 208 (413)
+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+. ...+||+.+.+.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~ 181 (437)
T TIGR00792 102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLAL 181 (437)
T ss_pred HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHH
Confidence 667788889988887777788889987 568899999988887777765543332 12379999988877
Q ss_pred HHHHHHh-hhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHH
Q 015068 209 PCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287 (413)
Q Consensus 209 ~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
+.++..+ ..+..+|+++. . .++ ++++.+....++++++++..+...+.
T Consensus 182 l~~~~~~~~~~~~~e~~~~----~-~~~--------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (437)
T TIGR00792 182 IGVVSLIICFFGTKERYSE----I-PKN--------------------------IEKKLSLKQIFKALFKNDQLLILCLA 230 (437)
T ss_pred HHHHHHHHHHcCCEecCCC----C-Ccc--------------------------cccCCCHHHHHHHHhCCHHHHHHHHH
Confidence 6666554 34556665310 0 000 00011122345556666555444443
Q ss_pred HHHHHHHHhcCchhHHhchHHHHhhc-CCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Q 015068 288 IGLLVLQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 364 (413)
..+..+... ....+.+.+.+.. + ++.. .......++.+++.++.+++.||+|+|+.+..+..+.+++.+.+.
T Consensus 231 ~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 305 (437)
T TIGR00792 231 YLFYNLAFN----IKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFF 305 (437)
T ss_pred HHHHHHHHH----HHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 333333221 2222223233221 2 1222 344455788889999999999999999999888877777666554
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-18 Score=155.60 Aligned_cols=268 Identities=12% Similarity=0.051 Sum_probs=177.1
Q ss_pred HHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHH--HHHHHHHHHHHHHhHHH-HHhhhchhHHHHHHHHH-HHHH
Q 015068 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIF--GSLANVGAMVGAIASGQ-IAEYIGRKGSLMIAAVP-NIIG 128 (413)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~--~s~~~~~~~~~~~~~g~-l~dr~Grr~~l~~~~~~-~~~~ 128 (413)
..+...++.+++..+...|.+|.+.+|.|.|.+++|.. .++..+...+.+++.+. ..||+||||..++...+ ..+.
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~ 83 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC 83 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence 34455567788888899999999999999999999997 46778888888888854 78999999987665433 2222
Q ss_pred HHHHH-H--hcC-hhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhcc----cchH
Q 015068 129 WLIIS-F--SKD-SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF----VNWR 200 (413)
Q Consensus 129 ~~~~~-~--~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~----~~w~ 200 (413)
....+ + ..+ ...++..-++.++..+...+...++..|..++++++...+....+..+|..+|+...+. .|||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~ 163 (390)
T TIGR02718 84 LASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQR 163 (390)
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 22222 2 222 33444555666677777788888888898888888888888888888888888865443 4999
Q ss_pred HHHHhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcc
Q 015068 201 VLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRY 280 (413)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (413)
..|++.++..++..+..++++|+++. +.+. +++...++++.++++.
T Consensus 164 ~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~-------------------------------~~~~~~~~~~~l~~~~ 209 (390)
T TIGR02718 164 PAFLLVACVPLASLVCVLWLKDRAVA---SPEA-------------------------------PLARRASLFRFFRRPL 209 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcC---cccc-------------------------------chhhHHHHHHHHcCcC
Confidence 99999887776655554444433210 0000 0001123456666665
Q ss_pred hhHHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHH-HHHHHHHHHHHHHHhhcCCcHHHHHHhHHHH
Q 015068 281 WFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLG-VVQVVATGVNTWLMDKAGRRLLLLISSSGMA 357 (413)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 357 (413)
.+.......+..... .....+.+.++++.|+++.+ ......+ ...+++.++.|++.||+|+|+.+..+..+..
T Consensus 210 ~~~~~~~~~l~~~~~----~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~ 285 (390)
T TIGR02718 210 AWSLLALALLSAMTA----VSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAG 285 (390)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 544444333332222 23333556677778888776 3333333 4566778899999999999999887766553
Q ss_pred H
Q 015068 358 A 358 (413)
Q Consensus 358 ~ 358 (413)
+
T Consensus 286 ~ 286 (390)
T TIGR02718 286 S 286 (390)
T ss_pred H
Confidence 3
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=154.68 Aligned_cols=275 Identities=15% Similarity=0.152 Sum_probs=173.8
Q ss_pred cccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHh----hhchhHHHHHH-HHHHHHHHHHHHHhcChh
Q 015068 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGRKGSLMIA-AVPNIIGWLIISFSKDSS 139 (413)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~ 139 (413)
..+...+..+.+.+++|.+..+.+++..+..+...+.+++.|.++| |+||||.++.+ .+...++.++.+++++..
T Consensus 19 ~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~ 98 (477)
T TIGR01301 19 GWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIG 98 (477)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 3344455666678899999999999999999999999999999999 59999998875 666667777777776643
Q ss_pred -----------------HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcc--hhHhhHHHHHHHHHHHHHHHhhccc---
Q 015068 140 -----------------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR--GSLGSVNQLSVTIGIMLAYLLGLFV--- 197 (413)
Q Consensus 140 -----------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~i~~~~--- 197 (413)
.++++-.+..++.....+...+++.|.+|+++| +.+.++.+...++|..+|+.+++..
T Consensus 99 ~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~ 178 (477)
T TIGR01301 99 HLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLY 178 (477)
T ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 222333344457777888889999999998865 5789999999999999998887642
Q ss_pred ----------------chHHHHHhhHHHHHHHHh-hhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 015068 198 ----------------NWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRS 260 (413)
Q Consensus 198 ----------------~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (413)
+.|+.|++.++..++..+ ..+..+|.|....++.++++ .+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~-------~~---------------- 235 (477)
T TIGR01301 179 KIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE-------AA---------------- 235 (477)
T ss_pred HhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh-------cc----------------
Confidence 457788887776666555 45567886531100000000 00
Q ss_pred HhhcchhhhhhHHHHhhh-----cchhHHHHHHHHHHHHHhcCchhHHhchHHHHhh-c-CCCCc------------hhH
Q 015068 261 VASSSRRTAIRFAELKRK-----RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-A-GISSS------------NVA 321 (413)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-g~~~~------------~~~ 321 (413)
+.++.+....++++++. +..++..+.-.+.++ +...+..|.+.+..+ . +-++. .+.
T Consensus 236 -~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~----a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~ 310 (477)
T TIGR01301 236 -PPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWI----AWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFG 310 (477)
T ss_pred -cccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHH----HHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHH
Confidence 00000011122333222 222333333333333 334444444444432 1 21111 133
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC-cHHHHHHhHHHHHHHHHHHHHH
Q 015068 322 TFGLGVVQVVATGVNTWLMDKAGR-RLLLLISSSGMAASFFLVSVAF 367 (413)
Q Consensus 322 ~~~~~~~~~~~~~~~g~l~dr~g~-~~~~~~~~~~~~~~~~~~~~~~ 367 (413)
.....+...+.+++..++.+|+|+ |+....+.++.++++....+..
T Consensus 311 l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~ 357 (477)
T TIGR01301 311 LMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVT 357 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777888899999985 6666778777777777766443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-16 Score=149.26 Aligned_cols=140 Identities=16% Similarity=0.270 Sum_probs=118.6
Q ss_pred HHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHhhh
Q 015068 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRLLEGFG 151 (413)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~ 151 (413)
..+.+++|++.++.+++.+.+........+++|+++|| +|||+.++.+.++.+++..++++++ +...+.++|+++|++
T Consensus 46 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig 125 (500)
T PRK09584 46 VYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVG 125 (500)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34678999999999999888877777777899999999 5999999999999999999998875 456677889999999
Q ss_pred hhhhhhhHHHHHHhcCCCCc--chhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHH
Q 015068 152 VGVISYTVPVYIAEIAPQNM--RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL 213 (413)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~ 213 (413)
.|...+...+++.|++|+++ |+.+.++++.+.++|..+||.+++++ |||+.|++.++..++.
T Consensus 126 ~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 126 NGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLIT 193 (500)
T ss_pred hhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 99999999999999998654 45678888899999999999998877 8999999877544443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=157.27 Aligned_cols=175 Identities=11% Similarity=0.056 Sum_probs=132.8
Q ss_pred hhhHHH-hhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHH---HHHhcChhHHHHHHH
Q 015068 71 PTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI---ISFSKDSSFLFMGRL 146 (413)
Q Consensus 71 ~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~ 146 (413)
...|.+ ++++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+. ...+++...++++++
T Consensus 271 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (490)
T PRK10642 271 TYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLL 350 (490)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345554 4678998888888888899999999999999999999999988877654433322 223456777888899
Q ss_pred HHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhHHHHHHHHhhhcccc
Q 015068 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFIP 221 (413)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~~~~~~ 221 (413)
+.|++.+........++.|.+|++.|++++++......++..++|.+.+.+ +|+.++++..+.+++..+..+++|
T Consensus 351 ~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~p 430 (490)
T PRK10642 351 MLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMK 430 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 999888777777888899999999999999974333444456666666554 477777666666666666666789
Q ss_pred CchHHHHHc-----CChHHHHHHHHHHhC
Q 015068 222 ESPRWLAKM-----GMTEDFESSLQVLRG 245 (413)
Q Consensus 222 e~~~~~~~~-----~~~~~~~~~~~~~~~ 245 (413)
|+|+|+.++ ++.+|+++.++++++
T Consensus 431 es~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 431 ETANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred cccCCCCCCccccccchhhHHHHhhcccc
Confidence 999987755 888999999988873
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-17 Score=151.30 Aligned_cols=293 Identities=17% Similarity=0.192 Sum_probs=200.1
Q ss_pred hhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHh----hhchhHHHH-HHHHHHHHHHHHHHHh-c-------Ch
Q 015068 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGRKGSLM-IAAVPNIIGWLIISFS-K-------DS 138 (413)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l~-~~~~~~~~~~~~~~~~-~-------~~ 138 (413)
..+.+.+.+|+++...|.+..+..+..++..|+.|.++| |+||||..+ .+.+..+++.+++... + ..
T Consensus 24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~ 103 (428)
T PF13347_consen 24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL 103 (428)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence 345577788999999999999999999999999999999 899776665 5778888887777765 4 22
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhcCC-CCcchhHhhHHHHHHHHHHHHHHHhhccc-----------chHHHHHhh
Q 015068 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----------NWRVLAVLG 206 (413)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----------~w~~~~~~~ 206 (413)
..+.+..++..++.........++..|..+ +++|.+..+.-..+..+|..+...+...+ +|++..++.
T Consensus 104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~ 183 (428)
T PF13347_consen 104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVL 183 (428)
T ss_pred HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHH
Confidence 345677777889999999889999999997 57899999998888888876544444322 488888777
Q ss_pred HHHHHHHHhh-hccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHH
Q 015068 207 VLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (413)
Q Consensus 207 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
+++.++..+. .+..+|+++ +.+.++++.+.+..++.+++++..+...
T Consensus 184 ~iv~~v~~~i~~~~~ke~~~--------------------------------~~~~~~~~~~~~~~~~~~~~nr~~~~l~ 231 (428)
T PF13347_consen 184 AIVGLVFFLITFFFVKERSV--------------------------------EVTEQEKKISLRDSLRSLFRNRPFRILL 231 (428)
T ss_pred HHHHHHHhhhhhheeeeccc--------------------------------cccccccccccccchhhhcccchHHHHH
Confidence 7666665544 445666211 0001111223344567777777766666
Q ss_pred HHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch-hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Q 015068 286 IGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN-VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 364 (413)
....+.............+|..+.+ +.+... .......+..+++.++.++++||+|+|+.+..+..+.+++.+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~y~~~~vl---~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~ 308 (428)
T PF13347_consen 232 LAFFLQWLAFALMNTFLPYYFTYVL---GNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLF 308 (428)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHh---cCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHH
Confidence 5555544444333333344433333 333222 555566788889999999999999999999999999888888776
Q ss_pred HHHHhcccccCCCcchhHHHHHHHHHHHHHHHHHhccccccceeeecCC
Q 015068 365 VAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413 (413)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~E~ 413 (413)
+... + ..+...+...+.+.+++... .+++...+|+
T Consensus 309 ~~~~-~------------~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~ 343 (428)
T PF13347_consen 309 FLGP-G------------SPWLVLILFILAGIGYGAFF-VIPWAMLADV 343 (428)
T ss_pred HHHh-h------------hHHHHHHHHHHhHhhhcccc-cccccccccc
Confidence 5532 1 23444455555566665543 5566666653
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-15 Score=133.40 Aligned_cols=285 Identities=15% Similarity=0.076 Sum_probs=196.5
Q ss_pred hcCchhhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHH
Q 015068 42 RDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA 121 (413)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~ 121 (413)
.+..+++|+++++.++.++.+++....++++.+...+.+| +.+..-|..-+|.+.+....+.+-|+.||+|-|....++
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg 115 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG 115 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence 3456778888888899889998888888898888888899 878889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc------Chh--HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHh
Q 015068 122 AVPNIIGWLIISFSK------DSS--FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193 (413)
Q Consensus 122 ~~~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i 193 (413)
..+.++|..+-..+. .++ ....+..+.+.+.-.....-..+..-|+++++|..+..+-..+..+|..+|.++
T Consensus 116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred HHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 999999999987653 334 566788888888766666656777789999999999999998888998888888
Q ss_pred hccc----------chHH--HHHhhHHHHH-HHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 015068 194 GLFV----------NWRV--LAVLGVLPCT-LLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRS 260 (413)
Q Consensus 194 ~~~~----------~w~~--~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (413)
...+ .|.. .|+....... ...+..+..++.|+...+. ...
T Consensus 196 ppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~---------------------------s~~ 248 (480)
T KOG2563|consen 196 PPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSA---------------------------SQA 248 (480)
T ss_pred cceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCch---------------------------hHh
Confidence 7665 3654 3443333322 2233333344433210000 000
Q ss_pred HhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCC--chhHHHHHHHHHHHHHHHHHH
Q 015068 261 VASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISS--SNVATFGLGVVQVVATGVNTW 338 (413)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~g~ 338 (413)
+.++.+-..+.+..++++.+....++..+... .++.....+...+...|.+. .........++++++++++|.
T Consensus 249 -~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g----~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gi 323 (480)
T KOG2563|consen 249 -ALQDASFPKSIKSCFKNRQFIILAICYGIGLG----LFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGI 323 (480)
T ss_pred -hhhcCcHHHHHHHHHcCccHHHHHHHHhhhHH----HHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHh
Confidence 00012234556677777654444443333332 34444444443444446653 337777778899999999999
Q ss_pred HHhhcCCcH-HHHHHhHHHHHH
Q 015068 339 LMDKAGRRL-LLLISSSGMAAS 359 (413)
Q Consensus 339 l~dr~g~~~-~~~~~~~~~~~~ 359 (413)
+.||.+.-+ .+.+......++
T Consensus 324 i~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 324 IADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH
Confidence 999988744 444444443333
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-15 Score=140.27 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=117.6
Q ss_pred cchhhHH-HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhh-chhHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHH
Q 015068 69 SSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGR 145 (413)
Q Consensus 69 ~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r 145 (413)
+...+|. +.+++|.++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++++..+ +...+.++.
T Consensus 28 ~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l 107 (493)
T PRK15462 28 MRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSL 107 (493)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 3344444 4667899999999999999999999999999999999 999999999999999988776543 223344444
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCC--cchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHH
Q 015068 146 LLEGFGVGVISYTVPVYIAEIAPQN--MRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI 214 (413)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~ 214 (413)
.+.++|.|...+...++++|.+|++ +|.++.++...+.++|..++|.+.+++ |||+.|.++++..++.+
T Consensus 108 ~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l 182 (493)
T PRK15462 108 AIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL 182 (493)
T ss_pred HHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence 5555666777777889999999875 688899999999999999999998877 89999988765443333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=151.06 Aligned_cols=264 Identities=12% Similarity=0.013 Sum_probs=159.5
Q ss_pred cccchhhH-HHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHh----hhch-hHHHHHHHHHHHHHHHHHHHhcC---
Q 015068 67 GYSSPTQA-EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGR-KGSLMIAAVPNIIGWLIISFSKD--- 137 (413)
Q Consensus 67 ~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~~--- 137 (413)
+...+.++ .+.+.+|+++..+|.+..+..+.-++..|+.|.++| |+|| |+.++.+.+..+++..++...++
T Consensus 23 ~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~ 102 (473)
T PRK10429 23 GIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEG 102 (473)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCc
Confidence 33334333 456667999999999999999999999999999999 6698 55566677777777666644332
Q ss_pred ---hhHHHHHHHHHhhhhhhhhhhHHHHHHhcC-CCCcchhHhhHHHHHHHHHHHHHHHhhc--------c---cchHHH
Q 015068 138 ---SSFLFMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLGL--------F---VNWRVL 202 (413)
Q Consensus 138 ---~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~--------~---~~w~~~ 202 (413)
+..+++..++.+++.....+...++..|.. ++++|.+..++-..+..+|..+.+.+.. . .+|+..
T Consensus 103 ~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~ 182 (473)
T PRK10429 103 TAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMF 182 (473)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH
Confidence 234555667778888888888889999998 6889999888866666665444332221 1 146766
Q ss_pred HHhhHHHHHHHHh-hhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcch
Q 015068 203 AVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYW 281 (413)
Q Consensus 203 ~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (413)
..+.++..++..+ ..+..+|.+.....+ ..++++.+.+..++.+++++.+
T Consensus 183 ~~i~~~~~~~~~~~~~~~~~e~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~n~~~ 233 (473)
T PRK10429 183 TLVLIAFFIVSTIITLRNVHEVYSSDNQV-----------------------------SAEGSHLTLKDIVALIYKNDQL 233 (473)
T ss_pred HHHHHHHHHHHHHHHHcCceecCCccccc-----------------------------cccccCCCHHHHHHHHhcCHHH
Confidence 6665555444333 344466642100000 0000111122334445555444
Q ss_pred hHHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHH
Q 015068 282 FPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (413)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 359 (413)
+..+....+..... .....+.+++.+....+... ......+++.+++.++.+++.||+|+|+.+..+..+..++
T Consensus 234 ~~ll~~~~~~~~~~----~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~ 309 (473)
T PRK10429 234 SCLLGMALAYNIAS----NIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLS 309 (473)
T ss_pred HHHHHHHHHHHHHH----HHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 44333333222221 22222223333322222222 3344455778889999999999999999998887766655
Q ss_pred HHHH
Q 015068 360 FFLV 363 (413)
Q Consensus 360 ~~~~ 363 (413)
.+.+
T Consensus 310 ~~~~ 313 (473)
T PRK10429 310 CGVL 313 (473)
T ss_pred HHHH
Confidence 5544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=149.06 Aligned_cols=251 Identities=14% Similarity=0.054 Sum_probs=157.4
Q ss_pred hhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhh----hchh-HHHHHHHHHHHHHHHHHHHhcC------hhH
Q 015068 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRK-GSLMIAAVPNIIGWLIISFSKD------SSF 140 (413)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~ 140 (413)
....+.+++|+|..++|.+.++..+..++..|+.|.++|| +||| +.++.+.+..++...+....++ +..
T Consensus 32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~ 111 (444)
T PRK09669 32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY 111 (444)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 3445778899999999999999999999999999999998 7875 4455677777777766555543 345
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhcC-CCCcchhHhhHHHHHHHHHHHHHHHhh----cc-------cchHHHHHhhHH
Q 015068 141 LFMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLG----LF-------VNWRVLAVLGVL 208 (413)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~----~~-------~~w~~~~~~~~~ 208 (413)
+++..++.+.+.........++..|+. ++++|++..++......+|..+++.+. .. .+|+..+.+.++
T Consensus 112 ~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~i 191 (444)
T PRK09669 112 ACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGL 191 (444)
T ss_pred HHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 566677777777777777788999988 567898887887777777666654432 11 167777776666
Q ss_pred HHHHHHh-hhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHH
Q 015068 209 PCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287 (413)
Q Consensus 209 ~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
+.++..+ ..+..+|.++. + ++++.+....++.+++++.++.....
T Consensus 192 i~~v~~~~~~~~~~e~~~~-------~---------------------------~~~~~~~~~~~~~~~~n~~~~~l~~~ 237 (444)
T PRK09669 192 LGVVLFFCCFFMTKERYTP-------E---------------------------VDNSSSVWKDLKLLLGNSQWRIMFIF 237 (444)
T ss_pred HHHHHHHHHhCCeEEecCC-------C---------------------------CcCCCCHHHHHHHHhCCchHHHHHHH
Confidence 5555443 33444553210 0 00011223455666777666655444
Q ss_pred HHHHHHHHhcCchhHHhchHHHHhhcCCCCch-hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHH
Q 015068 288 IGLLVLQQLSGINGVLFYSSNIFANAGISSSN-VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (413)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 359 (413)
..+.............+|..+.+ +..+.. .......+..+++.++.+++.||+|+|+.+..+.....++
T Consensus 238 ~~~~~~~~~~~~~~~~y~~~~~~---~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~ 307 (444)
T PRK09669 238 NVVLLTAVVTRGGATLYYVNYVL---LRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVIL 307 (444)
T ss_pred HHHHHHHHHHHhhhhheeeeeec---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 33332222111112222222221 211111 2333445667788889999999999999988776655443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-17 Score=134.15 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=128.8
Q ss_pred hhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhh-hchhHHHHHHHHHH
Q 015068 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPN 125 (413)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~ 125 (413)
++......+|+..|..+++....+....+...|.+++.++..++.++|..-..+-++++|++.|| +|-|..-++-+++.
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv 120 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV 120 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence 44566677777778999999998888889999999999999999999999999999999999997 79888888878888
Q ss_pred HHHHHHHHH---hcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhh
Q 015068 126 IIGWLIISF---SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (413)
Q Consensus 126 ~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 194 (413)
.+|.++++. .+.+|.++.+|++.|+|.-....+-..+..-|+..|+.+.++|+......+|..+-..+.
T Consensus 121 ~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm 192 (459)
T KOG4686|consen 121 FLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLM 192 (459)
T ss_pred HHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeec
Confidence 888887754 678999999999999998888888899999999999999999999999988876544433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-15 Score=139.53 Aligned_cols=286 Identities=12% Similarity=0.040 Sum_probs=172.6
Q ss_pred HHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhc-----hhHHHHHHHHHHH-HHHHH
Q 015068 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG-----RKGSLMIAAVPNI-IGWLI 131 (413)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~~~-~~~~~ 131 (413)
.++..|+..-......+.+.+++|+++++++...++..+...+-.+ +|+++||++ ||+.++++.++.. ++...
T Consensus 34 ~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~ 112 (468)
T TIGR00788 34 VLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGL 112 (468)
T ss_pred HHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHh
Confidence 3455555533334556667888999999999999999999999665 999999998 7777777776663 44333
Q ss_pred HHHhcChhHHH-HHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHH---HHHHHHHHHHHhhccc----chHHHH
Q 015068 132 ISFSKDSSFLF-MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQL---SVTIGIMLAYLLGLFV----NWRVLA 203 (413)
Q Consensus 132 ~~~~~~~~~l~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~---~~~~g~~~~~~i~~~~----~w~~~~ 203 (413)
.+..++..... +..++.+++.+...++..+++.|..+ ++++...+.... ...+|..+|+.+++.+ +||..|
T Consensus 113 l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f 191 (468)
T TIGR00788 113 LPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILF 191 (468)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHH
Confidence 44445544444 47899999999999999999999998 555443333322 2336777766666654 899999
Q ss_pred HhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhH
Q 015068 204 VLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (413)
++.+...++..+..++++|++.....+ ..++.. . . .. .......+...+.....+..++++..+.
T Consensus 192 ~~~a~l~ll~~~~~~~~~E~~~~~~~~-~~~~~~-~-------~-~~-----~~~~~~~~~~~~~~~~l~~~l~~~~i~~ 256 (468)
T TIGR00788 192 LITAALLLLQLFVSNLSKERRAFVRPR-IGTYLE-M-------N-MA-----LLTLGVLANVKVQILGLRGAIQLLEIAK 256 (468)
T ss_pred HHHHHHHHHHHHHHHhccccccccccc-ccccch-h-------h-hh-----hhhhhHHHHHHHHHHHHHHHHhcHHHHH
Confidence 988877776665667778753100000 000000 0 0 00 0000000000111112333344444333
Q ss_pred HHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHH
Q 015068 284 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFF 361 (413)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 361 (413)
.+....+.+.........+.++.+ ...|+++.. ......+++.+++....+++.+|++.|+.+.++.++.+++.+
T Consensus 257 ~l~fifl~~~~~~~~~~~~f~~~~---~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~ 333 (468)
T TIGR00788 257 PLIFIFLSYANLPGASGSVFCATT---QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSL 333 (468)
T ss_pred HHHHHHHHHhhcCCCCceeEEEEc---ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHh
Confidence 333222211111111111111222 245777766 666677899999999999999999999999888888777665
Q ss_pred HH
Q 015068 362 LV 363 (413)
Q Consensus 362 ~~ 363 (413)
..
T Consensus 334 ~~ 335 (468)
T TIGR00788 334 FD 335 (468)
T ss_pred Cc
Confidence 43
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-14 Score=129.86 Aligned_cols=266 Identities=18% Similarity=0.188 Sum_probs=180.9
Q ss_pred hccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHhcChhHH
Q 015068 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG-RKGSLMIAAVPNIIGWLIISFSKDSSFL 141 (413)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~l 141 (413)
.+..+.+.|.++..-++.|.|..|+|.+.++..+...++++++|.++||++ +|+.+.+..++.++........++++.+
T Consensus 15 f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~ 94 (400)
T PF03825_consen 15 FFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWL 94 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 344566778888899999999999999999999999999999999999986 6777778788888877777788899988
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHH-----HHhhcccc---hHHHHHhhHHHHHHH
Q 015068 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA-----YLLGLFVN---WRVLAVLGVLPCTLL 213 (413)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~-----~~i~~~~~---w~~~~~~~~~~~~~~ 213 (413)
++.-++..+......|...++..+...+ ++.-.|-.-...++|-.++ ..+.+..+ ..+.+++.+...++.
T Consensus 95 ~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll 172 (400)
T PF03825_consen 95 FVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLL 172 (400)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHH
Confidence 8888888888888888888888887753 2333333444444444433 22333332 234556666555555
Q ss_pred HhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHH
Q 015068 214 IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVL 293 (413)
Q Consensus 214 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (413)
....+.+|+.|+. +..+ +..++....+..+++++|.....++...+...
T Consensus 173 ~~~~l~lp~~~~~---~~~~----------------------------~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~ 221 (400)
T PF03825_consen 173 AGFALFLPKTPPK---RSAK----------------------------ESVKKLLGLDALKLLKNPRFLVFLLAAFLIGI 221 (400)
T ss_pred HHHHHhCCCCccc---cccC----------------------------CCcccccchHHHHHhcCccHHHHHHHHHHHHH
Confidence 5555667776520 0000 00011111233456777665544444433333
Q ss_pred HHhcCchhHHhchHHHHhhcC-CCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHH
Q 015068 294 QQLSGINGVLFYSSNIFANAG-ISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (413)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g-~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 365 (413)
. ......|.+.++++.| .+... .......++.++.-...+++.+|+|.|+++.++.+..++=..+++.
T Consensus 222 ~----~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~ 292 (400)
T PF03825_consen 222 S----HAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAY 292 (400)
T ss_pred H----HHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3445566677788887 44333 4455666788888899999999999999999998888877777664
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-15 Score=135.08 Aligned_cols=292 Identities=17% Similarity=0.184 Sum_probs=194.6
Q ss_pred HHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhh----hchhHH-HHHHHHHHHHHHHHHHHhcC------hhHHHH
Q 015068 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRKGS-LMIAAVPNIIGWLIISFSKD------SSFLFM 143 (413)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~-l~~~~~~~~~~~~~~~~~~~------~~~l~~ 143 (413)
.+.+.+|+++..+|.+..+.-+.-++.-|+.|.+.|| +||||. ++.+.+..++.+.++-.+++ ....++
T Consensus 38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~v 117 (467)
T COG2211 38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALV 117 (467)
T ss_pred HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHH
Confidence 4667789999999999999999999999999999995 787555 55677888888888887773 445666
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhcC-CCCcchhHhhHHHHHHHHHHHHHHHhhccc-----------chHHHHHhhHHHHH
Q 015068 144 GRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----------NWRVLAVLGVLPCT 211 (413)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----------~w~~~~~~~~~~~~ 211 (413)
...+.+++.......-.++..|.+ +++||.+..++-+.+..+|..+...+...+ ||+....+.+++..
T Consensus 118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~ 197 (467)
T COG2211 118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGV 197 (467)
T ss_pred HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHH
Confidence 788999999999988899999998 478899999999888888865543333211 67777776666665
Q ss_pred HHHhhhcc-ccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHH
Q 015068 212 LLIPGLFF-IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (413)
Q Consensus 212 ~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (413)
+..+..++ .+|.+.. +. ...+..+.+.+..+..+++++.++...+...+
T Consensus 198 i~~l~~~~~v~ER~~~---~~---------------------------~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~ 247 (467)
T COG2211 198 ILLLFCFFNVKERVVE---TQ---------------------------PTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLL 247 (467)
T ss_pred HHHHHHHHHhhcccCc---cc---------------------------cCcccccccHHHHHHHHHccchHHHHHHHHHH
Confidence 55554333 5665320 00 00000122223344556677666555553333
Q ss_pred HHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHHHH
Q 015068 291 LVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFF 368 (413)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 368 (413)
.............+|..+.+ |.++.. ........+.+++.++..++.+|+|+|++...+.++.+++.+++.+..
T Consensus 248 ~~~~~~i~~s~~~yy~~y~l---g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~- 323 (467)
T COG2211 248 LFIAFNIRGSIMVYYVTYVL---GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP- 323 (467)
T ss_pred HHHHHHHHhhhhheeEEEEc---CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc-
Confidence 33332222233333333322 443333 344455566667789999999999999999999888888888877653
Q ss_pred hcccccCCCcchhHHHHHHHHHHHHHHHHHhccccccceeeecCC
Q 015068 369 LEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413 (413)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~E~ 413 (413)
. ....+.++..++..++.+.. .+++|...+|+
T Consensus 324 --~----------~~~~l~~~~~~i~~~g~~~~-~~l~wam~~d~ 355 (467)
T COG2211 324 --A----------GSVVLIVVALIIAGVGTGIA-NPLPWAMVADT 355 (467)
T ss_pred --C----------cchHHHHHHHHHHHHHhhcc-ccccHHHhcch
Confidence 1 12344455555556666654 57788877764
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-14 Score=133.59 Aligned_cols=247 Identities=13% Similarity=0.062 Sum_probs=158.0
Q ss_pred HHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhh----hchhHHHH-HHHHHHHHHHHHHHHhcC------hhHHH
Q 015068 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRKGSLM-IAAVPNIIGWLIISFSKD------SSFLF 142 (413)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~l~-~~~~~~~~~~~~~~~~~~------~~~l~ 142 (413)
..+.+.+|+++..+|.+..+.-+.-++.-|+.|.++|| +||||..+ ++.+..+++.+++...++ ...+.
T Consensus 34 ~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~ 113 (460)
T PRK11462 34 FFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAA 113 (460)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence 34667789999999999999999999999999999995 79876655 566777777776655553 34456
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhcCC-CCcchhHhhHHHHHHHHHHHHHHHhhcc----c-------chHHHHHhhHHHH
Q 015068 143 MGRLLEGFGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLF----V-------NWRVLAVLGVLPC 210 (413)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~----~-------~w~~~~~~~~~~~ 210 (413)
+.-++..++.......-.++..|..+ +++|++..++...+..+|..+++.+... + +|+....+.+++.
T Consensus 114 ~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~ 193 (460)
T PRK11462 114 ITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVA 193 (460)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence 66777788888888888899999986 7889999999888888877666554321 1 4676665555554
Q ss_pred HHHHhh-hccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHH
Q 015068 211 TLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIG 289 (413)
Q Consensus 211 ~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (413)
++..+. ....+|.++. ++++.+.+...+..++++.++.......
T Consensus 194 ~i~~~i~~~~~kE~~~~-----------------------------------~~~~~~~~~~l~~~~~Nk~~~~l~~~~~ 238 (460)
T PRK11462 194 FMMLAFCFFTTKERVEA-----------------------------------PPTTTSMREDLRDIWQNDQWRIVGLLTI 238 (460)
T ss_pred HHHHHHHHhcceeccCC-----------------------------------CccCCCHHHHHHHHhCChHHHHHHHHHH
Confidence 444433 3334443210 0001112234455666655554443333
Q ss_pred HHHHHHhcCchhHHhchHHHHhhcCCCCch-hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHH
Q 015068 290 LLVLQQLSGINGVLFYSSNIFANAGISSSN-VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAA 358 (413)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 358 (413)
+.............+|..+.+ +..+.. .......+..+++.++++++.||+++|+....+.....+
T Consensus 239 ~~~~~~~~~~~~~~y~~~y~~---g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~ 305 (460)
T PRK11462 239 FNILAVCVRGGAMMYYVTWIL---GTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAV 305 (460)
T ss_pred HHHHHHHHHHhHhhhhhhhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 333322222223333333332 222222 344556778888999999999999999887655544333
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-14 Score=130.32 Aligned_cols=172 Identities=20% Similarity=0.261 Sum_probs=133.6
Q ss_pred HHHhHHHHhhhccccccchhhHHHhhh--hccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhch-hHHHHHHHHHHHHHH
Q 015068 53 LVVALGPIQFGFTCGYSSPTQAEIISD--LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGW 129 (413)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~ 129 (413)
.++.+.+++.+...+++.+..-.+.++ .+.+.+..|++.++..++.+++++.+|+.+.|.|. |+.++.+.++..+|+
T Consensus 37 ~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~ 116 (488)
T KOG2325|consen 37 YLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGN 116 (488)
T ss_pred HHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHH
Confidence 333445555666667766665555555 67788889999999999999999999999999996 888999999999999
Q ss_pred HHH-HHh---c-ChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc------c
Q 015068 130 LII-SFS---K-DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------N 198 (413)
Q Consensus 130 ~~~-~~~---~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------~ 198 (413)
++. +++ + ..+.++++|++.|+|.|. .....+|+++....++|.++++....+..+|..+||.++..+ |
T Consensus 117 llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G 195 (488)
T KOG2325|consen 117 LLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKG 195 (488)
T ss_pred HHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCc
Confidence 988 332 3 567889999999999765 457789999998889999999999888888888888877554 1
Q ss_pred -----------hHHHHHhhHHHHHHHHhh-hccccCchH
Q 015068 199 -----------WRVLAVLGVLPCTLLIPG-LFFIPESPR 225 (413)
Q Consensus 199 -----------w~~~~~~~~~~~~~~~~~-~~~~~e~~~ 225 (413)
+..+-|+.++..++.++. .++++|.++
T Consensus 196 ~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 196 FMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred eEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 345667777766666554 445677644
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-13 Score=128.97 Aligned_cols=252 Identities=12% Similarity=0.130 Sum_probs=148.0
Q ss_pred HHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhh----chhHHH-HHHHHHHHHHHHHH-HHh----cC--hhHH
Q 015068 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI----GRKGSL-MIAAVPNIIGWLII-SFS----KD--SSFL 141 (413)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~l-~~~~~~~~~~~~~~-~~~----~~--~~~l 141 (413)
+.+.+.+|++..++|.+.++..+..++..++.|+++||. ||||.. ..+.+...+..++. ... ++ ...+
T Consensus 33 ~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (448)
T PRK09848 33 SYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA 112 (448)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH
Confidence 356777899999999999999999999999999999996 777755 45555444444443 221 11 2223
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCC-CCcchhHhhHHHHH-----HHHHHHHHHHhhccc------chHHHHHhhHHH
Q 015068 142 FMGRLLEGFGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLS-----VTIGIMLAYLLGLFV------NWRVLAVLGVLP 209 (413)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~-----~~~g~~~~~~i~~~~------~w~~~~~~~~~~ 209 (413)
++..++.+++.+...+...++..+..+ +++|.+..++-..+ ..++..++|.++... +|.....+.++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~ 192 (448)
T PRK09848 113 YLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIA 192 (448)
T ss_pred HHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 445667788888888777788787764 46788776655433 334555566665433 121111122222
Q ss_pred HHHHH-hhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHH
Q 015068 210 CTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (413)
Q Consensus 210 ~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (413)
.++.. +.....||+++. +.++...+..++.+++++......+..
T Consensus 193 ~~~~~~~~~~~~~e~~~~-----------------------------------~~~~~~~~~~~~~l~~n~~f~~~~~~~ 237 (448)
T PRK09848 193 GMVLYFICFKSTRENVVR-----------------------------------IVAQPSLKISLQTLKRNRPLFMLCIGA 237 (448)
T ss_pred HHHHHHHHHcCcEeccCC-----------------------------------CccCCCHHHHHHHHhCCchHHHHHHHH
Confidence 22222 223334554210 000111223456677776665544444
Q ss_pred HHHHHHHhcCchhHHhchHHHHhhc-CCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Q 015068 289 GLLVLQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 364 (413)
.+...... ......++++++. |.++.. .......++.+++.++.+++.||+|+|+.+..+..+..++.+.+.
T Consensus 238 ~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~ 312 (448)
T PRK09848 238 LCVLISTF----AVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFF 312 (448)
T ss_pred HHHHHHHH----HHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 33333222 2222334444432 443333 222223456778889999999999999999999888777766654
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.7e-15 Score=114.38 Aligned_cols=132 Identities=23% Similarity=0.373 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCC
Q 015068 91 GSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN 170 (413)
Q Consensus 91 ~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 170 (413)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+.....++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567888899999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred cchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhh-ccccC
Q 015068 171 MRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL-FFIPE 222 (413)
Q Consensus 171 ~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~-~~~~e 222 (413)
+|++..++.+....+|..+++.+++.+ +|++.+++.+...++..+.. ++.||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999888766 79999988777666655543 33444
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-13 Score=115.06 Aligned_cols=259 Identities=12% Similarity=0.061 Sum_probs=159.8
Q ss_pred chhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHh
Q 015068 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (413)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (413)
+|..-.+.+++|.+..|++.+....+....+..++.|.++||+|||+.-+...++.+++++ +-..+++..++++|++.|
T Consensus 54 GpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgG 132 (354)
T PF05631_consen 54 GPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGG 132 (354)
T ss_pred cchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHH
Confidence 3555566788999999999999999999999999999999999999999999999999986 456789999999999999
Q ss_pred hhhhhhhhhHHHHHH-hcCC----CCcchhHhhHHH-HHHHHHHHHHHHhhccc------chHHHHHhhHHHHHHHHhhh
Q 015068 150 FGVGVISYTVPVYIA-EIAP----QNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGL 217 (413)
Q Consensus 150 ~~~g~~~~~~~~~i~-~~~~----~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~------~w~~~~~~~~~~~~~~~~~~ 217 (413)
++....+.+-.++.. |.-. ++..+...+... ...++-.+.+.+++..+ |-..+|.......++..+.+
T Consensus 133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I 212 (354)
T PF05631_consen 133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLI 212 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence 999999988887654 4322 222222222111 11222233333444333 33678887777666665544
Q ss_pred -ccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHh
Q 015068 218 -FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQL 296 (413)
Q Consensus 218 -~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (413)
...+|...- ..+.. ...+..+..++.+.+++ +.+.......+...
T Consensus 213 ~~~W~ENyg~---~~~~~----------------------------~~~~~~~~a~~~i~~d~---ril~LG~~qslFE~ 258 (354)
T PF05631_consen 213 LKTWPENYGD---TSSSS----------------------------SLSGSFREAWRAILSDP---RILLLGLIQSLFEG 258 (354)
T ss_pred HhcccccCCC---ccccc----------------------------chHHHHHHHHHHHHcCc---hhHHHHHHHHHHHH
Confidence 345654220 00000 00011112233444433 44455556666666
Q ss_pred cCchhHHhchHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHh-hcCCcHHHHHHhHHHHHHHHHH
Q 015068 297 SGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMD-KAGRRLLLLISSSGMAASFFLV 363 (413)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~g~~~~~~~~~~~~~~~~~~~ 363 (413)
..+..+..|.|.+-.+..--+....+..+.++.++|+.+..++.. +......+...+.+.++++.+-
T Consensus 259 smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~aa~~l~~p 326 (354)
T PF05631_consen 259 SMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVAAVSLAIP 326 (354)
T ss_pred HHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 667777778887652211113337777778888888888766554 4333334433344433333333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.3e-14 Score=128.73 Aligned_cols=150 Identities=17% Similarity=0.223 Sum_probs=123.0
Q ss_pred hhHH-HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhh
Q 015068 72 TQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (413)
Q Consensus 72 ~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (413)
..|. +++++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+........++.+.+++.+++.++
T Consensus 238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 317 (393)
T PRK15011 238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAI 317 (393)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444 557789999999999888888888899999999999999998887766666655555567788888889999998
Q ss_pred hhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhhccccC
Q 015068 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (413)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e 222 (413)
+.+...+....+..|.+|+ +|+++.++++....+|..+++.+++.+ +|+..|++.++..++..+..++.||
T Consensus 318 ~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 318 YIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888777788888998884 699999999888889999998888776 8999998888777777766666654
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-14 Score=133.68 Aligned_cols=145 Identities=15% Similarity=0.103 Sum_probs=121.6
Q ss_pred hhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhh
Q 015068 79 DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 158 (413)
Q Consensus 79 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 158 (413)
+.+.+..+.|++.++..++..++.++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+.
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778899999999999999999999999999999999999999999899999999999999999999999888888
Q ss_pred HHHHHHhcCCCCcchhHhhH-HHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHh-hhccccCc
Q 015068 159 VPVYIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIPES 223 (413)
Q Consensus 159 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~-~~~~~~e~ 223 (413)
...++.|.+|++.|++..+. ++....+|..+++.+.+.+ ||+..|.+.++..++..+ ..+.++++
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88999999999988887655 5677788888888888776 899999987766555444 33344444
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.3e-14 Score=137.02 Aligned_cols=137 Identities=16% Similarity=0.081 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcC
Q 015068 88 SIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167 (413)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 167 (413)
.+...+..++..++.++.|+++||+|||++++++.++.+++.++.++.++...+++.+++.|++.++.++...++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456677889999999999999999999999999999999999999999888888999999988889999999999999
Q ss_pred CCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhHHHHHHHHhhhccccCch
Q 015068 168 PQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPGLFFIPESP 224 (413)
Q Consensus 168 ~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~~~~~~~~~~e~~ 224 (413)
|+++|++++|+.+....+|.++||.+++.+ +...+|++.++..++..++..++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999998765 445677777777666666666778863
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-16 Score=149.10 Aligned_cols=299 Identities=17% Similarity=0.158 Sum_probs=3.0
Q ss_pred HHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhc
Q 015068 57 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK 136 (413)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~ 136 (413)
+..+......++....++.++++|+++.++.|++.+.+-++..+..++..+..+|..|-|.+-.+.++.++|++++++-+
T Consensus 10 ~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPh 89 (539)
T PF03137_consen 10 LLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPH 89 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccH
Confidence 33344466777788889999999999999999999999999999999999999998888888899999999998887510
Q ss_pred --------------------------------------------------ChhHHHHHHHHHhhhhhhhhhhHHHHHHhc
Q 015068 137 --------------------------------------------------DSSFLFMGRLLEGFGVGVISYTVPVYIAEI 166 (413)
Q Consensus 137 --------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 166 (413)
-+..++++.++.|+|....++.+.+|+-|.
T Consensus 90 f~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDn 169 (539)
T PF03137_consen 90 FLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDN 169 (539)
T ss_dssp --------------------------------------------------------------SSS---------------
T ss_pred hhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccc
Confidence 034777889999999999999999999999
Q ss_pred CCCCcchhHhhHHHHHHHHHHHHHHHhhccc----------------------c----hHHHHHhhHHHHHHHHhhhccc
Q 015068 167 APQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----------------------N----WRVLAVLGVLPCTLLIPGLFFI 220 (413)
Q Consensus 167 ~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----------------------~----w~~~~~~~~~~~~~~~~~~~~~ 220 (413)
.++++-+..+|+..+...+|+.+|.++++.. . |-.-|++.++..++..+..+++
T Consensus 170 v~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F 249 (539)
T PF03137_consen 170 VSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF 249 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999888654 1 3333444444444444555556
Q ss_pred cCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCch
Q 015068 221 PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300 (413)
Q Consensus 221 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (413)
|++.+...+..+.++.++ .+....+.+...+ ++..+...+..++-....++++++ +.++...+..........
T Consensus 250 Pk~lp~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~df~~~l~~Ll~N----p~f~~~~la~~~~~~~~~ 322 (539)
T PF03137_consen 250 PKKLPGTSERQEEKESSE--RKEEDSDKDSFKD-PKSKKSFGKSIKDFPKALKRLLTN----PVFMCLILAGVFESFIVS 322 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccCCCcccccchhhhhh--cchhhhhhhcccc-cccccchhhhhhhHHHHHHHHhcC----hHHHHHHHHHHHHHHHHH
Confidence 654221100000000000 0000000000000 000000001112222333444444 455555566666666677
Q ss_pred hHHhchHHHHhhc-CCCCch--hHH-HHHHHHHHHHHHHHHHHHhhcCC--cHHHHHHhHHHHHHHHH
Q 015068 301 GVLFYSSNIFANA-GISSSN--VAT-FGLGVVQVVATGVNTWLMDKAGR--RLLLLISSSGMAASFFL 362 (413)
Q Consensus 301 ~~~~~~~~~~~~~-g~~~~~--~~~-~~~~~~~~~~~~~~g~l~dr~g~--~~~~~~~~~~~~~~~~~ 362 (413)
.+..|.|.+++.. +.++.. ... ...-.+..+|.+++|++.+|++- |+.+....+...++.++
T Consensus 323 G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~ 390 (539)
T PF03137_consen 323 GFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVIL 390 (539)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHH
Confidence 8888899988854 776555 222 22334667899999999999753 44444444444444333
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.4e-14 Score=124.98 Aligned_cols=269 Identities=16% Similarity=0.112 Sum_probs=149.7
Q ss_pred cccccchhhHHH-hhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHH--HHHHHHHHH-HHh----c
Q 015068 65 TCGYSSPTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV--PNIIGWLII-SFS----K 136 (413)
Q Consensus 65 ~~~~~~~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~--~~~~~~~~~-~~~----~ 136 (413)
..+...|..+.- .++.|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++.... +...+.+.. .+. .
T Consensus 22 ~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~ 101 (412)
T PF01306_consen 22 IWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQS 101 (412)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666654 45589999999999999999999999999999999996665543322 222222222 222 3
Q ss_pred Chh-HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhHHHHHH
Q 015068 137 DSS-FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTL 212 (413)
Q Consensus 137 ~~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~ 212 (413)
|.+ ..+++-+..|+......++..+++.++.. +.+.-.|-.-...++|.+++..+++.+ +-+..||+....+++
T Consensus 102 n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr--~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~i 179 (412)
T PF01306_consen 102 NFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSR--RNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAII 179 (412)
T ss_dssp T-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH--HHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH--HhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHH
Confidence 432 33344445566566666666776666542 233445555566667777777777665 556778877665555
Q ss_pred HHhhhcc-ccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHH
Q 015068 213 LIPGLFF-IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLL 291 (413)
Q Consensus 213 ~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (413)
..++.++ -|+.++....++.. ..++++...++..++++.+..+...+.....
T Consensus 180 l~lll~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~ 232 (412)
T PF01306_consen 180 LLLLLLLLKPDVPPQAEVADAL---------------------------GAKKDKVSLKDVLSLFKMRNFWFFVLFVIGV 232 (412)
T ss_dssp HHHHHHSS---SSSSS-SSTTS---------------------------SS------HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcCchhhhhhccc---------------------------ccCCCCCcHHHHHHHhcchhHHHHHHHHHHH
Confidence 5444333 33332200000000 0000111122345666666655544433333
Q ss_pred HHHHhcCchhHHhchHHHHhhcCCC----Cch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHH
Q 015068 292 VLQQLSGINGVLFYSSNIFANAGIS----SSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (413)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~g~~----~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 365 (413)
... +.......+.++...--+ +.. +......+..++.-.+.+++.+|+|.|+.++++..++.+=....++
T Consensus 233 ~~~----Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~ 308 (412)
T PF01306_consen 233 AAI----YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF 308 (412)
T ss_dssp HHH----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH----HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh
Confidence 222 233333334444433222 221 4555566788888999999999999999999998888887777664
Q ss_pred H
Q 015068 366 A 366 (413)
Q Consensus 366 ~ 366 (413)
.
T Consensus 309 ~ 309 (412)
T PF01306_consen 309 A 309 (412)
T ss_dssp -
T ss_pred h
Confidence 3
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=134.50 Aligned_cols=294 Identities=17% Similarity=0.201 Sum_probs=203.4
Q ss_pred HHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHH
Q 015068 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (413)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 129 (413)
..+.+.++..+.+++..+++...+.++.+.|+++.++.|++.+.+-++..+...+..+..-|..|-+.+-.|.+++++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 34455556667777777888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh--------------------c---------------------------C----h-hHHHHHHHHHhhhhhhhhh
Q 015068 130 LIISFS--------------------K---------------------------D----S-SFLFMGRLLEGFGVGVISY 157 (413)
Q Consensus 130 ~~~~~~--------------------~---------------------------~----~-~~l~~~r~l~G~~~g~~~~ 157 (413)
+++++- + + + ..++++.++.|+|....++
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 998862 0 0 1 2566789999999999999
Q ss_pred hHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----------------------chHHHHHhhHHHHHHHH
Q 015068 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----------------------NWRVLAVLGVLPCTLLI 214 (413)
Q Consensus 158 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----------------------~w~~~~~~~~~~~~~~~ 214 (413)
.+.+|+-|...+++-...+|+......+|+++|.++++++ .|..-|++.+.+.++..
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998665 26666667777777777
Q ss_pred hhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHH
Q 015068 215 PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQ 294 (413)
Q Consensus 215 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (413)
+.++++|.+.+... ++.+++ ..+.....+ + ..+.........++-+...+.++++ ++++...+....
T Consensus 337 ~p~f~fPk~lp~~~---~~~~~~-~~~~~k~~~-~----~~~~~~~~~~~ikdfp~s~~~ll~N----~if~~~~l~~~~ 403 (735)
T KOG3626|consen 337 VPLFFFPKELPKSQ---KRKRAR-DLHVLKTES-G----GAKSDKTFGKKIKDFPKSIKRLLSN----PIFMLVVLASVI 403 (735)
T ss_pred HHHHhCcccCcccc---ccchhh-hhccccccc-c----cccCCcchhhhHHHHHHHHHHHhcC----chHHHHHHHHHH
Confidence 77777776532111 000000 000000000 0 0000000000111222334444444 555666666666
Q ss_pred HhcCchhHHhchHHHHhhc-CCCCch--hHHHHH-HHHHHHHHHHHHHHHhhcCC--cHHHHHHhHHH
Q 015068 295 QLSGINGVLFYSSNIFANA-GISSSN--VATFGL-GVVQVVATGVNTWLMDKAGR--RLLLLISSSGM 356 (413)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~-~~~~~~~~~~~g~l~dr~g~--~~~~~~~~~~~ 356 (413)
....+.....|.|.+++.. |.++.. ...... -.+..+|.+++|++++|+.. |....+..+..
T Consensus 404 ~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~ 471 (735)
T KOG3626|consen 404 ESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS 471 (735)
T ss_pred HHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence 6667788888999999854 776555 333233 33455788899999999764 44444333333
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-13 Score=126.98 Aligned_cols=149 Identities=10% Similarity=0.076 Sum_probs=125.6
Q ss_pred hhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhh
Q 015068 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (413)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (413)
..|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+..++.|++
T Consensus 242 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 321 (406)
T PRK11551 242 WLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF 321 (406)
T ss_pred HHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 45667778899999999999999999999999999999999999999888777777777777788888888888889998
Q ss_pred hhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhHHHHHHHHhhhccc
Q 015068 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFI 220 (413)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~~~~~ 220 (413)
.+...+...+++.|.+|+++|++..++.+....+|..++|.+++.+ +|...++......++..+..+.+
T Consensus 322 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999999999999999887 45666666555555544444433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=126.00 Aligned_cols=142 Identities=12% Similarity=0.035 Sum_probs=121.3
Q ss_pred hhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcCh--hHHHHHHHHHh
Q 015068 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS--SFLFMGRLLEG 149 (413)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G 149 (413)
..+.+.++++.++.+.++..+.+.++..++.++.|++.||+|||+.+..+..+..++.++..+.++. ..++...++.|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (377)
T TIGR00890 227 LYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF 306 (377)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence 3445667889998899999999999999999999999999999999999999998888887777643 33445678888
Q ss_pred hhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHH
Q 015068 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL 213 (413)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~ 213 (413)
++.+...+....++.|.+|+++|++..++.+....+|..++|.+.+.+ ||++.|++.++..++.
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 888888888888999999999999999999999999999999888765 8999998877665544
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5e-12 Score=113.92 Aligned_cols=143 Identities=17% Similarity=0.258 Sum_probs=122.2
Q ss_pred HHHhhhhc----cCcchhHHHHHHHHHHHHHHHHhHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHhc--ChhHHHHHHH
Q 015068 74 AEIISDLK----LTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRL 146 (413)
Q Consensus 74 ~~i~~~~~----~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~ 146 (413)
..+..+++ +++++..-+.+.|..-.-+...++|+++|| +|+|+.++.+.++..+|.++.+.+. +...+.++-.
T Consensus 46 ~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~ 125 (498)
T COG3104 46 LYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLA 125 (498)
T ss_pred HHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHH
Confidence 34555555 999999888888888888999999999999 5999999999999999999999984 7889999999
Q ss_pred HHhhhhhhhhhhHHHHHHhcCCCCc--chhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhh
Q 015068 147 LEGFGVGVISYTVPVYIAEIAPQNM--RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (413)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~ 216 (413)
+.++|.|..-+....++.|.+|+++ |-..++++..+.++|..++|++.+++ ||+..|...++-.....+.
T Consensus 126 ~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~ 201 (498)
T COG3104 126 LIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI 201 (498)
T ss_pred HHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997643 66678888889999999999988777 8999998877655544443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-13 Score=126.47 Aligned_cols=152 Identities=14% Similarity=0.273 Sum_probs=123.2
Q ss_pred hhHHHhhhhccC--------cchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhc----Chh
Q 015068 72 TQAEIISDLKLT--------ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK----DSS 139 (413)
Q Consensus 72 ~~~~i~~~~~~s--------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~ 139 (413)
..+...++.|.+ .++.+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... +++
T Consensus 230 ~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~ 309 (418)
T TIGR00889 230 FGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYA 309 (418)
T ss_pred hHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHH
Confidence 334455566544 36679999999999999999999999999999999999999988877776642 245
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHH-HHHHHHHHHHHHhhccc----------chHHHHHhhHH
Q 015068 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV----------NWRVLAVLGVL 208 (413)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~----------~w~~~~~~~~~ 208 (413)
.+++.+++.|++.+...+....++.|.+|+++|+++.++.+ ...++|..+||.+++.+ ||+..|.+.++
T Consensus 310 ~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~ 389 (418)
T TIGR00889 310 LLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAG 389 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 67778999999999988998999999999999999999997 66788999999988765 38999988777
Q ss_pred HHHHHHh-hhccccCc
Q 015068 209 PCTLLIP-GLFFIPES 223 (413)
Q Consensus 209 ~~~~~~~-~~~~~~e~ 223 (413)
..++..+ ..++++|+
T Consensus 390 ~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 390 YIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 6555544 45556766
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.2e-13 Score=121.89 Aligned_cols=146 Identities=15% Similarity=0.226 Sum_probs=122.5
Q ss_pred HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhh
Q 015068 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVI 155 (413)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 155 (413)
+.+++|.++.+.+++.+...+...++.++.|++.||+|||+.+..+.++..+........++.+.+.+.+++.|++.+..
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 305 (375)
T TIGR00899 226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGIL 305 (375)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999988888888889999999999999999998887777666666666778888888899999999988
Q ss_pred hhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhhccccC
Q 015068 156 SYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (413)
Q Consensus 156 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e 222 (413)
.+....++.|..|+ +++++.++++....+|..++|.+++.+ ||+..|++.++..++..+...+++|
T Consensus 306 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 306 AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 88888999998875 567999999998889999999888765 8999999888877776666555543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-13 Score=118.29 Aligned_cols=193 Identities=11% Similarity=0.029 Sum_probs=131.1
Q ss_pred HHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---------------
Q 015068 133 SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------- 197 (413)
Q Consensus 133 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--------------- 197 (413)
+...++..++++-++.|.|.+...+..+.++.+..++|++.+.+++.+..+++|..++|.+++.+
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 35678999999999999999999999999999999999999999999999999999999998732
Q ss_pred -----chHHHHHhhHHHHHHHHhhhcc--ccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhh
Q 015068 198 -----NWRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAI 270 (413)
Q Consensus 198 -----~w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (413)
+|+++|++.+...++..+.+.+ +||.+. ++++ +..+++. .
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~-----------------------~~~~~~~----~ 131 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA-----------------------RVSSGDT----T 131 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc-----------------------ccccccc----c
Confidence 4888888655544444333333 454311 0000 0000000 0
Q ss_pred hHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhhc---CCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015068 271 RFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA---GISSSN--VATFGLGVVQVVATGVNTWLMDKAGR 345 (413)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~ 345 (413)
..++.++++..+ ...+..+........+..|.+.++++. |+++.+ ........+.++|+++.+++.||+++
T Consensus 132 ~~~~~~~~~~~~----l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~ 207 (310)
T TIGR01272 132 QKTSAFQFTHLV----LGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQ 207 (310)
T ss_pred chhhHHhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 011222322222 223333333334556777788888643 676655 56667788899999999999999999
Q ss_pred cHHHHHHhHHHHHHHHH
Q 015068 346 RLLLLISSSGMAASFFL 362 (413)
Q Consensus 346 ~~~~~~~~~~~~~~~~~ 362 (413)
|+.+..+..+..++.++
T Consensus 208 ~~~l~~~~~l~~~~~~l 224 (310)
T TIGR01272 208 GRYLAFNAFLAVLLSIG 224 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888777666655533
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.5e-12 Score=110.23 Aligned_cols=262 Identities=16% Similarity=0.118 Sum_probs=172.1
Q ss_pred HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhc-----hhHHHHH-HHHHHHHHHHHHHHh-----c-------C
Q 015068 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG-----RKGSLMI-AAVPNIIGWLIISFS-----K-------D 137 (413)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~-~~~~~~~~~~~~~~~-----~-------~ 137 (413)
+..|++++..-.+.+.++.++... ..+.+|+.+|+.+ ||..+++ |..+...+..+..++ . +
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 667899999999999998887765 6899999999999 8877775 455555555554432 2 1
Q ss_pred h--h--HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhH-
Q 015068 138 S--S--FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGV- 207 (413)
Q Consensus 138 ~--~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~- 207 (413)
. + ...++-.+.|+|.+.......+++.|..|+++|+++.++.....-+|.+++..+.+.+ .-|..-.+..
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~ 164 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV 164 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence 2 2 3344578889999999999999999999999999999999999999999998887765 2222222222
Q ss_pred -HHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHH
Q 015068 208 -LPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMI 286 (413)
Q Consensus 208 -~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
+..+...+...+=.|++. .... +..++++......++++..++..++++.
T Consensus 165 a~i~~~l~~ia~wg~E~r~-~~~~----------------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~ 215 (403)
T PF03209_consen 165 ALIALLLNLIALWGQEPRR-SRRA----------------------------AAAERPRPPFREAWRQVWASPQARRFFV 215 (403)
T ss_pred HHHHHHHHHHHHHhcccCC-cccc----------------------------cCCCCCCccHHHHHHHHHhCCChhHHHH
Confidence 222222222222222211 0000 0011222333456777777777777766
Q ss_pred HHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHh-hcCCcHHHHHHhHHHHHHHHHH
Q 015068 287 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMD-KAGRRLLLLISSSGMAASFFLV 363 (413)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d-r~g~~~~~~~~~~~~~~~~~~~ 363 (413)
...+..+..+.--..+--|.... +|++..+ ......+.+.++|-...+++.. |.++++....++....+++.++
T Consensus 216 fl~l~t~a~~~QD~iLEPygg~V---fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~li 292 (403)
T PF03209_consen 216 FLFLGTLAFFMQDVILEPYGGEV---FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALI 292 (403)
T ss_pred HHHHHHHHHHhhHHHcCCchhHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Confidence 55555543322222222233333 3887766 5666667888888888887665 6788888889999999998888
Q ss_pred HHHHHhc
Q 015068 364 SVAFFLE 370 (413)
Q Consensus 364 ~~~~~~~ 370 (413)
.++....
T Consensus 293 i~a~~~~ 299 (403)
T PF03209_consen 293 ILAGPLG 299 (403)
T ss_pred HHHHhcc
Confidence 7765544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.8e-13 Score=121.14 Aligned_cols=157 Identities=21% Similarity=0.327 Sum_probs=138.3
Q ss_pred hccccccchhhHHHhhhh-ccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhH-HHHHHHHHHHHHHHHHHHhcChhH
Q 015068 63 GFTCGYSSPTQAEIISDL-KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKG-SLMIAAVPNIIGWLIISFSKDSSF 140 (413)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~-~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~ 140 (413)
...........|.+.++. |.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++.+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 267 (352)
T cd06174 188 SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267 (352)
T ss_pred HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 334444455666666654 899999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhh
Q 015068 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (413)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~ 216 (413)
+.+..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+ +|++.+++.++..++..+.
T Consensus 268 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347 (352)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988765 8999999888877776665
Q ss_pred hcc
Q 015068 217 LFF 219 (413)
Q Consensus 217 ~~~ 219 (413)
.++
T Consensus 348 ~~~ 350 (352)
T cd06174 348 LLL 350 (352)
T ss_pred hee
Confidence 444
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.1e-13 Score=122.25 Aligned_cols=150 Identities=13% Similarity=0.189 Sum_probs=123.5
Q ss_pred hhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhh
Q 015068 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (413)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (413)
..+.+.++.|. ++.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++
T Consensus 238 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 315 (399)
T PRK05122 238 FITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFG 315 (399)
T ss_pred HHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444455565 3456677888899999999999999999999999999888888888888888888888899999999
Q ss_pred hhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhhccccCc
Q 015068 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPES 223 (413)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e~ 223 (413)
.+...+.....+.|..|+++|+++.++++....+|..+++.+.+.+ ||++.+++.+...++..+..++++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 316 FSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9998888888888999999999999999999999988887777665 89999988877766666555555443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.2e-11 Score=111.75 Aligned_cols=243 Identities=19% Similarity=0.261 Sum_probs=155.2
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHH-HHHHHHHHHHHHHh-c-ChhHHHHHHHHHhhhhhhhhhhHHH
Q 015068 85 SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA-AVPNIIGWLIISFS-K-DSSFLFMGRLLEGFGVGVISYTVPV 161 (413)
Q Consensus 85 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~-~~~~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~g~~~~~~~~ 161 (413)
+..++..++..+..++..|+.|.++|+-|+||.++.. ..+..+.+.+..+. + +++...+.-++.-++.+.......+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999977666654 55555566666663 3 3444444556666788888888999
Q ss_pred HHHhcCCCCcc--------------------------hhHhhHHHHHHHHHHHHHHHhhccc------------chHHHH
Q 015068 162 YIAEIAPQNMR--------------------------GSLGSVNQLSVTIGIMLAYLLGLFV------------NWRVLA 203 (413)
Q Consensus 162 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~i~~~~------------~w~~~~ 203 (413)
++.|..+++++ ++..+.-.....+|.++..++.-.+ +-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999998888 8888888777888877766554332 247777
Q ss_pred HhhHHHHHHH-HhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchh
Q 015068 204 VLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWF 282 (413)
Q Consensus 204 ~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (413)
.+.++.-++. +...+++||.|+.. . .++.. ......-++-..++++..+.+...
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~---~-~~~~~---------------------~~~~~g~~~l~~t~k~~~~~~~~~ 284 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPR---P-LPSGS---------------------SYLRFGFKRLWRTFKEIRKLRQLF 284 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCC---C-CCcch---------------------hHHHHHHHHHHHHHHHHHhChHHH
Confidence 7777654444 44666678775410 0 00000 000000111122333333333222
Q ss_pred HHHHHHHHHHHHHhcCchhHHhchHHHHh-hcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCc--HHHHHHhHHH
Q 015068 283 PLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRR--LLLLISSSGM 356 (413)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~~~~~~~~~ 356 (413)
. ..+.++...-+.+.+......+.+ ..|++..+ ...+...+.+++|+++.+++.||+|.| +++..+....
T Consensus 285 ~----fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~ 359 (477)
T PF11700_consen 285 L----FLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW 359 (477)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 2 233333333344555555555555 56998877 556667899999999999999999999 7766655554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-12 Score=117.40 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=123.3
Q ss_pred hhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhh
Q 015068 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (413)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (413)
...|.+.+|+|.++.+.|++.++..++..++.++.+++.||+|+|+.+.++.+...+..++.++++|.+.+++.+++.|+
T Consensus 226 ~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~ 305 (382)
T TIGR00902 226 GFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCG 305 (382)
T ss_pred HHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Confidence 34555667799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHhcCCCCcchhHhhHHH-HHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHh
Q 015068 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (413)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~ 215 (413)
+.+...+....++.+. |+++|++..++++ ...++|..+++.+++.+ ++ ..|++.+...++..+
T Consensus 306 ~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 306 TFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 9999999999999998 8889999999986 56788888888888877 54 445555555554433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=120.32 Aligned_cols=141 Identities=17% Similarity=0.177 Sum_probs=109.3
Q ss_pred chhhHHHh-hhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHH--HHHHH--hcChhHHHHH
Q 015068 70 SPTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW--LIISF--SKDSSFLFMG 144 (413)
Q Consensus 70 ~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~l~~~ 144 (413)
....|.+. +++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..+.. +...+ .++.+.+.+.
T Consensus 239 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (394)
T TIGR00883 239 TTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFL 318 (394)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34455554 7789999999999999999999999999999999999998876554444333 22222 2466677778
Q ss_pred HHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhH-HHHHHHHHHHHHHHhhccc----c-hHHHHHhhHHHH
Q 015068 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPC 210 (413)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~----~-w~~~~~~~~~~~ 210 (413)
.++.|++.+...+...+++.|.+|+++|+++.++ ++....+|..++|.+++.+ + |++.++..++..
T Consensus 319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 319 VLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 8999999989999999999999999999999987 4566677888888888766 5 887766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-12 Score=119.02 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=122.1
Q ss_pred hhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhh
Q 015068 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (413)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (413)
..|.+.++.+.+ +.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.++++.++.|++
T Consensus 238 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 315 (392)
T PRK12382 238 FVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAG 315 (392)
T ss_pred HHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344455555654 356667778888899999999999999999999999999999888888888888888899999999
Q ss_pred hhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhhc
Q 015068 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (413)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~ 218 (413)
.+...+...+.+.|.+|+++|+++.++++....+|..++|.+.+.+ ||++.|.+.+...++..+..+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 316 CSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 9988888888999999999999999999999999999999888776 899999988776666655433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-12 Score=120.50 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=123.4
Q ss_pred cchhhHHHhhhhccCcch----hHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHH
Q 015068 69 SSPTQAEIISDLKLTISE----FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMG 144 (413)
Q Consensus 69 ~~~~~~~i~~~~~~s~~~----~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (413)
..+..+.+.++.+.+..+ .+.+.++..++..++.+..|+++||+|||+.+..+..+..++.+...+.++.+.+.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
T PRK09874 238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL 317 (408)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 344555555554333332 4566677788888999999999999999999999988888888888888888888899
Q ss_pred HHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhhcc
Q 015068 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (413)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~ 219 (413)
+++.|++.+...+...+++.+..++++||+.+++++....+|..+||.+++.+ +|++.|++.++..++..+..++
T Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 318 RFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988766 8999999888777766654433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-12 Score=118.05 Aligned_cols=149 Identities=13% Similarity=0.170 Sum_probs=109.7
Q ss_pred HHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH---hc-ChhHHHHHHHHHhh
Q 015068 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF---SK-DSSFLFMGRLLEGF 150 (413)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~-~~~~l~~~r~l~G~ 150 (413)
.+.+++|.+......+..+......++.++.|+++||+|||+.++.+.++..++.+.... .. +...+++..++.|+
T Consensus 276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (438)
T PRK09952 276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI 355 (438)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 345678888877666666677777889999999999999999998887766555443322 22 34444556677788
Q ss_pred hhhhhhhhHHHHHHhcCCCCcchhHhhHH-HHHHHHHHHHHHHhhccc------chHHHHHhhHHHHHHHHhhhccccCc
Q 015068 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVN-QLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPES 223 (413)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~i~~~~------~w~~~~~~~~~~~~~~~~~~~~~~e~ 223 (413)
+.+...+...+++.|.+|++.|+.+.++. +.+..+|..++|.+.+.+ +|+..+...++..++..+..+.++|+
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 88888888899999999999998888884 444557888888877665 48888777766666666655556654
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=121.60 Aligned_cols=146 Identities=12% Similarity=0.037 Sum_probs=120.4
Q ss_pred chhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhh--hchhHHHHH--HHHHHHHHHHHHHHhcChhHHHHHH
Q 015068 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY--IGRKGSLMI--AAVPNIIGWLIISFSKDSSFLFMGR 145 (413)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr--~Grr~~l~~--~~~~~~~~~~~~~~~~~~~~l~~~r 145 (413)
...+|.+.+++|.+..+.+++.++..++..++.++.|+++|| +++|+...+ +.++.+++.+++...++++.+++.+
T Consensus 261 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~ 340 (455)
T TIGR00892 261 IIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYC 340 (455)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 345566777889999999999999999999999999999997 344443333 3444455556667788999999999
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhHHHHHHHHh
Q 015068 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIP 215 (413)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~ 215 (413)
++.|++.+...+...+++.|.+|++++++.+++++....+|..+||.+++.+ +|++.|++.++..++..+
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876 599999887776554443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.2e-12 Score=118.51 Aligned_cols=154 Identities=12% Similarity=0.084 Sum_probs=127.1
Q ss_pred hhhHHHhhh-hccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHh
Q 015068 71 PTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (413)
Q Consensus 71 ~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (413)
...|.+.++ +|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.....++.++.|
T Consensus 244 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (417)
T PRK10489 244 VLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFG 323 (417)
T ss_pred HhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 345656665 8999999999999999999999999999999988888888888888888888888888888888899999
Q ss_pred hhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHH-HHhhhccccCch
Q 015068 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTL-LIPGLFFIPESP 224 (413)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~-~~~~~~~~~e~~ 224 (413)
++.+...+...+++.|..|+++|++.++++.....+|..+|+.+.+.+ |++..+++.+...++ .++....+++.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 324 YLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 998888888889999999999999999999998888999988888776 677777665554444 344455566553
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.9e-12 Score=116.04 Aligned_cols=150 Identities=15% Similarity=0.084 Sum_probs=122.5
Q ss_pred hhhHHHh-hhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHh
Q 015068 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (413)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (413)
...|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+.+.....+..+...+....++...+.+..++.|
T Consensus 226 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 305 (394)
T PRK03699 226 SWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLG 305 (394)
T ss_pred HHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3455554 678999999999999999999999999999999999999999888777777777777788877777888999
Q ss_pred hhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhhcccc
Q 015068 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIP 221 (413)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~~ 221 (413)
++.+..++...++..|..+ +++++..+.......+|..++|.+.+.+ ||+..+++.++..++..+....++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 306 FFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence 9888888888888888776 4567778888888889999999888776 899988887776666655444444
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-10 Score=102.42 Aligned_cols=276 Identities=14% Similarity=0.157 Sum_probs=169.9
Q ss_pred HHHhhh-hccCcchhH-HHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhh
Q 015068 74 AEIISD-LKLTISEFS-IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (413)
Q Consensus 74 ~~i~~~-~~~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (413)
|.+.+. .|+|..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++...+-+..++-|++
T Consensus 28 ~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~ 107 (412)
T PF01770_consen 28 PYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLA 107 (412)
T ss_pred HHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 345544 789888874 466667777888889999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc------chHHHHHhhHHHHHHHHhhhccccCchH
Q 015068 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPR 225 (413)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------~w~~~~~~~~~~~~~~~~~~~~~~e~~~ 225 (413)
.+. ..+-.+++-...|+++--++.+...++.-+|..++.++|..+ +++...++......+..+..+++|..++
T Consensus 108 ~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 108 TAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 765 667789999999988888899888888888888888887665 5667777766666666666677776554
Q ss_pred HHHHcCChHHHHHHHHHHhCCCcchHHHHH-HHHHHHhhcchhhhhhHHHHhh---hcchhHHHHHHHHHHHHHhcCchh
Q 015068 226 WLAKMGMTEDFESSLQVLRGFDTDISIEVN-EIKRSVASSSRRTAIRFAELKR---KRYWFPLMIGIGLLVLQQLSGING 301 (413)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 301 (413)
-..-+++.++... ..+....+.+...+.. +.++..+..+...+..++.+++ .-...+.++...+.+.....++.-
T Consensus 187 S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~q 265 (412)
T PF01770_consen 187 SLFFHRKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQ 265 (412)
T ss_pred ccceeccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHH
Confidence 2211111110000 0000000000000000 0000001111111122222222 122233344445555555556677
Q ss_pred HHhchHHHHhhcCCC-Cch----hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHH
Q 015068 302 VLFYSSNIFANAGIS-SSN----VATFGLGVVQVVATGVNTWLMDKAGRRLLLLI 351 (413)
Q Consensus 302 ~~~~~~~~~~~~g~~-~~~----~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 351 (413)
+..|...+.++..-+ +.. ..-....+.+.++.+..|++..++.+..-+..
T Consensus 266 v~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l 320 (412)
T PF01770_consen 266 VINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELAL 320 (412)
T ss_pred HHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHH
Confidence 777777777776221 222 33344455666777778887555555443333
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.8e-12 Score=117.11 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=105.6
Q ss_pred ccchhhHH-HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhH--HHH------HHHHHHHHHHHHHHHhcCh
Q 015068 68 YSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKG--SLM------IAAVPNIIGWLIISFSKDS 138 (413)
Q Consensus 68 ~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~--~l~------~~~~~~~~~~~~~~~~~~~ 138 (413)
......|. +.+++|.+..+.++..+...++..++.++.|+++||+|||+ ... .+.++..+........++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (399)
T TIGR00893 233 FFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIP 312 (399)
T ss_pred HHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 33344454 45668999999999999999999999999999999999996 111 1111111111111222344
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c-hHHHHHhhHHHHHHH
Q 015068 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTLL 213 (413)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~-w~~~~~~~~~~~~~~ 213 (413)
........+.+.+.+ ..+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+ + |++.+++.++..++.
T Consensus 313 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~ 391 (399)
T TIGR00893 313 YAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIG 391 (399)
T ss_pred HHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHH
Confidence 444444444444444 7888999999999999999999999999999999999988776 5 999888777666555
Q ss_pred Hhh
Q 015068 214 IPG 216 (413)
Q Consensus 214 ~~~ 216 (413)
.+.
T Consensus 392 ~~~ 394 (399)
T TIGR00893 392 ALS 394 (399)
T ss_pred HHH
Confidence 443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.2e-12 Score=118.55 Aligned_cols=149 Identities=13% Similarity=0.099 Sum_probs=107.0
Q ss_pred chhhHH-HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHH--HHHhcChhHHHHHHH
Q 015068 70 SPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI--ISFSKDSSFLFMGRL 146 (413)
Q Consensus 70 ~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~--~~~~~~~~~l~~~r~ 146 (413)
....|. +++++|.|..+.++..+...++..++.++.|+++||+|||+.++....+..++..+ ....++.....++++
T Consensus 278 ~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (467)
T PRK09556 278 DNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLF 357 (467)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344554 55779999999999999999999999999999999999998877654444433322 223456666778888
Q ss_pred HHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHH-HHHHHHHhhccc----------------chHHHHHhhHHH
Q 015068 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----------------NWRVLAVLGVLP 209 (413)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~----------------~w~~~~~~~~~~ 209 (413)
+.|++...........+.|.+|+++||++.|+.+....+ |..++|.+.+.+ +|+..|++..+.
T Consensus 358 ~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~ 437 (467)
T PRK09556 358 ALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIA 437 (467)
T ss_pred HHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHH
Confidence 888654333333346677999999999999999887775 656655544332 599998877666
Q ss_pred HHHHHhhhc
Q 015068 210 CTLLIPGLF 218 (413)
Q Consensus 210 ~~~~~~~~~ 218 (413)
.++..+..+
T Consensus 438 ~~~~~~~~~ 446 (467)
T PRK09556 438 AIGCICLMA 446 (467)
T ss_pred HHHHHHHHH
Confidence 555544433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-11 Score=112.66 Aligned_cols=145 Identities=12% Similarity=0.116 Sum_probs=117.9
Q ss_pred hhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhh
Q 015068 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (413)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (413)
.+|.+.++.|.+.++.++..+...++..+++++.|++.||+|+|+++..+..+..++.+... + ......+.++.|++
T Consensus 222 ~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~ 298 (381)
T PRK03633 222 LMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAA 298 (381)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHH
Confidence 45667777899999999999999999999999999999999999999888888777665443 2 23445577888888
Q ss_pred hhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhhcc
Q 015068 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (413)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~ 219 (413)
.....|...+++.|..|+++++...+..+...++|..+||.+++.+ +|++.|.+.+...++..+..+.
T Consensus 299 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 299 GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 7788899999999999988888888888888999999999998877 7889988877666555444333
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-10 Score=102.15 Aligned_cols=249 Identities=14% Similarity=0.207 Sum_probs=162.7
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHH-HHHHHHHHHHHHHHHhcC--h-hHHHHHHHHHhhhhhhhhhhHH
Q 015068 85 SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM-IAAVPNIIGWLIISFSKD--S-SFLFMGRLLEGFGVGVISYTVP 160 (413)
Q Consensus 85 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~~~--~-~~l~~~r~l~G~~~g~~~~~~~ 160 (413)
+..+...++..+..++-+|+.|.++|+.|+||... +...+..++..+..++++ + +..++.-.+..++.........
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 45788899999999999999999999999766655 445555566666666665 4 4444567888888888899999
Q ss_pred HHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhh------c----------------ccchHHHHHhhHHHHHHHHh-hh
Q 015068 161 VYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG------L----------------FVNWRVLAVLGVLPCTLLIP-GL 217 (413)
Q Consensus 161 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~------~----------------~~~w~~~~~~~~~~~~~~~~-~~ 217 (413)
+++.+..++++-++..++-.....+|..+.-++. + ...=|..+.+.++..++..+ .+
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~ 217 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI 217 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence 9999999988877776665544555544433322 1 00356777777766555543 55
Q ss_pred ccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhc
Q 015068 218 FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (413)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (413)
+..++.++- +.+. .+...+.-++.+.++++..+++.....++...+..-
T Consensus 218 ~~v~~~~~~---~~~~------------------------~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~D---- 266 (438)
T COG2270 218 LNVHDAEKI---SSPP------------------------PTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYID---- 266 (438)
T ss_pred hcccccccc---cccc------------------------hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh----
Confidence 556655430 0000 000111122334456666666655544444333322
Q ss_pred CchhHHhchHHHHh-hcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Q 015068 298 GINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 298 ~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 364 (413)
+.+.+......+-. +.|++..+ .......+..++|+++.|++.||+|.|+++..+.++..+.++...
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~ 336 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLI 336 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHH
Confidence 34455555555555 56998877 445556788999999999999999999998888877766665544
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.3e-12 Score=116.07 Aligned_cols=127 Identities=17% Similarity=0.222 Sum_probs=106.5
Q ss_pred chhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHh
Q 015068 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (413)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (413)
....|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+....+...+..++....++...+++..++.|
T Consensus 270 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 349 (398)
T TIGR00895 270 TNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAG 349 (398)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 34556788889999999999999999999999999999999999995544444433333333333567777888899999
Q ss_pred hhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhcc
Q 015068 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF 196 (413)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 196 (413)
++.+...+...+++.|.+|+++|+++.++......+|..+||.+++.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 350 FFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999999999999999998875
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-11 Score=112.17 Aligned_cols=141 Identities=14% Similarity=0.114 Sum_probs=111.9
Q ss_pred HHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHH-HHHHhcChhHHHHHHHHHhhhh
Q 015068 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL-IISFSKDSSFLFMGRLLEGFGV 152 (413)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~ 152 (413)
|.+.+++|.|..+.+++.+...++..++.++.|+++||+|||+... +..+..++.. +....++.+.+.++.++.|++.
T Consensus 230 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~ 308 (390)
T PRK03545 230 PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAI 308 (390)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 3456668999999999999999999999999999999999887544 4444444433 3455677888888999999988
Q ss_pred hhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhh
Q 015068 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (413)
Q Consensus 153 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~ 216 (413)
+...+.....+.|..| ++|++++++++....+|..+|+++++.+ |++..|++.+...++..+.
T Consensus 309 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~ 375 (390)
T PRK03545 309 MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVW 375 (390)
T ss_pred hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Confidence 7777777888888876 6889999998888888888888887765 8999998887776665544
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.6e-12 Score=116.70 Aligned_cols=131 Identities=18% Similarity=0.275 Sum_probs=107.6
Q ss_pred HHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHH-HHHHhcChhHHHHHHHHHhhhhh
Q 015068 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL-IISFSKDSSFLFMGRLLEGFGVG 153 (413)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~g 153 (413)
.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+..+.++..+..+ .....++.+.+.+..++.|++.+
T Consensus 264 ~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (405)
T TIGR00891 264 YLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQ 343 (405)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHc
Confidence 35567899999999999999999999999999999999999999888776544333 33344566667777788887777
Q ss_pred hhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c-hHHHHHh
Q 015068 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVL 205 (413)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~-w~~~~~~ 205 (413)
...+....++.|.+|+++|++++|+.+....+|..++|.+++.+ | |+..+..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 344 GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 77788889999999999999999999999999999999998877 4 6655443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-11 Score=116.78 Aligned_cols=154 Identities=15% Similarity=0.056 Sum_probs=113.3
Q ss_pred chhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhc--Ch-h-HHHHHH
Q 015068 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DS-S-FLFMGR 145 (413)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~-~-~l~~~r 145 (413)
....|.+.++.|.+.....+......++..++.++.|+++||+|||+.++.+.++.+++.++.+... +. . ....+-
T Consensus 291 ~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 370 (479)
T PRK10077 291 LYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 370 (479)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 3455778888999888788888888889999999999999999999999999999888887765432 21 1 223344
Q ss_pred HHHhhhhhh-hhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhc----------ccchHHHHHhhHHHHHHHH
Q 015068 146 LLEGFGVGV-ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL----------FVNWRVLAVLGVLPCTLLI 214 (413)
Q Consensus 146 ~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~----------~~~w~~~~~~~~~~~~~~~ 214 (413)
++.+.+.+. ..+....++.|.+|+++|++++++......+|..+++.+.. ..+|++.|++.++..++..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (479)
T PRK10077 371 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 450 (479)
T ss_pred HHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHH
Confidence 444444443 23667899999999999999999998888888877643332 2368888887776655555
Q ss_pred hh-hccccCc
Q 015068 215 PG-LFFIPES 223 (413)
Q Consensus 215 ~~-~~~~~e~ 223 (413)
+. .++.||+
T Consensus 451 ~~~~~~~~e~ 460 (479)
T PRK10077 451 LFMWKFVPET 460 (479)
T ss_pred HHHHhccccC
Confidence 54 3446665
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-11 Score=112.23 Aligned_cols=148 Identities=14% Similarity=0.075 Sum_probs=112.6
Q ss_pred chhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHH-HHHHHHHHHHHHHHH-----hcChhHHHH
Q 015068 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM-IAAVPNIIGWLIISF-----SKDSSFLFM 143 (413)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~-----~~~~~~l~~ 143 (413)
....|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+.... .++.+...+
T Consensus 242 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~ 321 (402)
T TIGR00897 242 AVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALI 321 (402)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Confidence 34566677889999999999999999999999999999999999988764 333333443333322 245666777
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhhcc
Q 015068 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (413)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~ 219 (413)
..++.|++.+...+. ...+.|..| ++|+++.++.+....+|..++|.+++.+ ||+..+++.++..++..+...+
T Consensus 322 ~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 322 IAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 888999888776553 456677654 6899999999999999999999888776 8898888887776665554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=116.73 Aligned_cols=159 Identities=14% Similarity=0.056 Sum_probs=119.5
Q ss_pred cccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH---h--c---
Q 015068 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF---S--K--- 136 (413)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~--~--- 136 (413)
.........|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.++.++ . +
T Consensus 299 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (481)
T TIGR00879 299 GINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS 378 (481)
T ss_pred CCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 3344445567788889999988999999999999999999999999999999999998888887777662 1 1
Q ss_pred ---ChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHH
Q 015068 137 ---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLP 209 (413)
Q Consensus 137 ---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~ 209 (413)
+...+....++.+.......+....++.|.+|+++|++++++.+....+|.++++.+.+.+ +|++.|++.++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~ 458 (481)
T TIGR00879 379 KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGL 458 (481)
T ss_pred cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHH
Confidence 2222223333333322233466667789999999999999999999999999999887765 799988887777
Q ss_pred HHHHHhhh-ccccCc
Q 015068 210 CTLLIPGL-FFIPES 223 (413)
Q Consensus 210 ~~~~~~~~-~~~~e~ 223 (413)
+++..+.. ++.||+
T Consensus 459 ~~~~~i~~~~~~~~~ 473 (481)
T TIGR00879 459 NVLGLIFVYFFLPET 473 (481)
T ss_pred HHHHHHHHheecccC
Confidence 66665544 445665
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.6e-12 Score=120.53 Aligned_cols=139 Identities=14% Similarity=0.098 Sum_probs=107.4
Q ss_pred chhhHHHh-hhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh--cChhHHHHHHH
Q 015068 70 SPTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--KDSSFLFMGRL 146 (413)
Q Consensus 70 ~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~ 146 (413)
...+|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||++++.+.++..++.++.... .+.+.+.+..+
T Consensus 295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (496)
T PRK03893 295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF 374 (496)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 34566665 5899999999999999999999999999999999999999988877766665544433 23334444555
Q ss_pred HHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHH
Q 015068 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVL 208 (413)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~ 208 (413)
+.+.......+....++.|.+|+++|++.+++......+|..+||.+++.+ ||+..+...+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSF 440 (496)
T ss_pred HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 555444344566778899999999999999999888899988998888765 78877755443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-11 Score=109.97 Aligned_cols=152 Identities=18% Similarity=0.116 Sum_probs=116.9
Q ss_pred hhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHh
Q 015068 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRLLEG 149 (413)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G 149 (413)
...|.+.+++|.+..+.++..+.+.++..++.++.|++.||+|||+.++.+..+..++..+....+ +...+ .-++.|
T Consensus 226 ~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g 303 (393)
T PRK09705 226 AWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCG 303 (393)
T ss_pred HHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHH
Confidence 345556667899999999999999999999999999999999999999988887777766554333 32222 234668
Q ss_pred hhhhhhhhhHHHHHHhcCC-CCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhHHHHHHHHhh-hccccC
Q 015068 150 FGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPG-LFFIPE 222 (413)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~-~~~~~e 222 (413)
++.+...+.......+..+ +++|++..++.+....++..++|.+.+++ +|...|++.++..++..+. ..+.||
T Consensus 304 ~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 304 LGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888888877777777775 56889999999999999999999888877 4778887776665555443 455666
Q ss_pred ch
Q 015068 223 SP 224 (413)
Q Consensus 223 ~~ 224 (413)
++
T Consensus 384 ~~ 385 (393)
T PRK09705 384 RF 385 (393)
T ss_pred cc
Confidence 53
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-10 Score=107.22 Aligned_cols=149 Identities=12% Similarity=0.146 Sum_probs=113.3
Q ss_pred HHHhhhhccCcchhHHHHH-HHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHH---HHh-cChhHHHHHHHHH
Q 015068 74 AEIISDLKLTISEFSIFGS-LANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFS-KDSSFLFMGRLLE 148 (413)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s-~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l~ 148 (413)
|.+.+++|.+..+.++... ...++..++.++.|+++||+|+|+.+.++.++.+++.+.. +.. ++...+.+.-+++
T Consensus 247 ~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~ 326 (491)
T PRK11010 247 TFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFE 326 (491)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3456779999999999974 6668999999999999999999998877666555544332 233 3555555566676
Q ss_pred hhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhhccccC
Q 015068 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (413)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e 222 (413)
.++.|...+...++..+..+++.+++..++.+....+|..+++.+++.+ ||+..|.+.++.++...+....+++
T Consensus 327 ~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 327 NLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666677788889999999999999999999999988776666665 8999998888777776665555544
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.3e-11 Score=109.81 Aligned_cols=135 Identities=13% Similarity=0.117 Sum_probs=113.2
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHH
Q 015068 81 KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVP 160 (413)
Q Consensus 81 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 160 (413)
+.+..+.|...++..+...++.+..|++.||+|||+.+.++.++.+++..+...++|.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999999998888878888999899999999999877777777
Q ss_pred HHHHhcCCCCcchhHhhH-HHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHh
Q 015068 161 VYIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (413)
Q Consensus 161 ~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~ 215 (413)
.++.+..+++.+++..+. ++....+|..+++.+++.+ ||+..|.+.++..++..+
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 788888888888776665 5677888888888877776 899999887776655544
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.9e-11 Score=108.54 Aligned_cols=139 Identities=16% Similarity=0.125 Sum_probs=114.3
Q ss_pred hhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhh
Q 015068 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (413)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (413)
..|.+.+|.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.+..+++.++.+.+++.+.+++..++.|++
T Consensus 227 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 306 (382)
T PRK11128 227 FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT 306 (382)
T ss_pred HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 33445577899999999999999999999999999999999999999999999999888888899999999999999999
Q ss_pred hhhhhhhHHHHHHhcCCCCcchhHhhHHH-HHHHHHHHHHHHhhccc----chHHHHHhhHHHHHH
Q 015068 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTL 212 (413)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~ 212 (413)
.+...+....++.+. +++++++..+..+ ....+|..+||.+++.+ ++ ..++..++..+.
T Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 999999999998887 5566788888876 55667778888888776 55 345544444433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.9e-11 Score=112.39 Aligned_cols=148 Identities=13% Similarity=0.124 Sum_probs=99.8
Q ss_pred hhhHHHh-hhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhh--chhHHH-HHHHHHHHHHHHHHHH--hcChhHHHHH
Q 015068 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSL-MIAAVPNIIGWLIISF--SKDSSFLFMG 144 (413)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~~~l~~~ 144 (413)
...|.+. ++.|.+..+.++..+.+.++..++.++.|+++||+ |||+.. +....+..++.+.... ..+.....++
T Consensus 274 ~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 353 (452)
T PRK11273 274 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMAC 353 (452)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Confidence 3555544 55789999999999999999999999999999999 555433 2223333333333322 2344444455
Q ss_pred HHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHH-HHHHhhccc----chHHHHHhhHHHHHHHHhhhc
Q 015068 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIM-LAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (413)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~ 218 (413)
.++.|.+..........+..|.+|+++||++.++.+....+|.. .+|.+.+.+ ||+..|++.+..+++.++...
T Consensus 354 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 354 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 55555543333333345678999999999999999887777654 467776655 899999887776666655433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.6e-11 Score=110.84 Aligned_cols=127 Identities=16% Similarity=0.168 Sum_probs=96.5
Q ss_pred hhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhh
Q 015068 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (413)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (413)
...|.+.++.|.++.+.+...+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.....+.-++.|+
T Consensus 252 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (426)
T PRK12307 252 GLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGL 331 (426)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 34566667789999999999999999999999999999999999999998887777666555443322222222233333
Q ss_pred h--hhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 151 G--VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 151 ~--~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
+ .....+..+.++.|.+|+++|++++|+......+|..++|.+.+.+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 332 MATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred HHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 2 2233455667889999999999999999988899999999988776
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=108.88 Aligned_cols=151 Identities=19% Similarity=0.198 Sum_probs=130.5
Q ss_pred hHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchh--HHHHHHHHHHHHHHHHHHH--------hcChhHHH
Q 015068 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK--GSLMIAAVPNIIGWLIISF--------SKDSSFLF 142 (413)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~l~ 142 (413)
...-.+++|++..+...+.-+..+...+|++++|++.||+|.| ++++.+++++.+..+...+ .++.+.+.
T Consensus 305 ~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~ 384 (477)
T PF11700_consen 305 GIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFW 384 (477)
T ss_pred HHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHH
Confidence 3345568999999999999999999999999999999999999 8988888888666666555 67888999
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhHHHHHHHHhhh
Q 015068 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGL 217 (413)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~~ 217 (413)
+.-++.|+..|..++...++.+|..|+++.+..+|++....-....+||++.+.+ +-|+.+....++.++..++.
T Consensus 385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll 464 (477)
T PF11700_consen 385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL 464 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998877 47888877777766666666
Q ss_pred ccccCc
Q 015068 218 FFIPES 223 (413)
Q Consensus 218 ~~~~e~ 223 (413)
++++.+
T Consensus 465 ~~v~~~ 470 (477)
T PF11700_consen 465 FFVDVE 470 (477)
T ss_pred hhccch
Confidence 666543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-10 Score=105.30 Aligned_cols=287 Identities=17% Similarity=0.213 Sum_probs=173.7
Q ss_pred HHHHHhHHHHhhhccccccchhhHHHhhhhccCcch-hHHHHHHH----HHHHHHHHHhHHHHHhhhchhHHHHHHHHHH
Q 015068 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISE-FSIFGSLA----NVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (413)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~~~~s~~----~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 125 (413)
+.....+-.+..++......+..+.....++..... .+...... .+...+.++..|.++||+|||..+....+..
T Consensus 23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~ 102 (463)
T KOG2816|consen 23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGT 102 (463)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHH
Confidence 334444445556666666666666666655543322 23333333 5777889999999999999999999999998
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHhh--hhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----ch
Q 015068 126 IIGWLIISFSKDSSFLFMGRLLEGF--GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NW 199 (413)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~r~l~G~--~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w 199 (413)
.+..+...+.. +|.++ +.|+ +.+.......++++|....++|....++....+..+..++|.+++.+ |.
T Consensus 103 ~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~ 177 (463)
T KOG2816|consen 103 ILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGI 177 (463)
T ss_pred HHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCc
Confidence 88888877766 33333 4443 34456777889999999999999999999999999999999988776 66
Q ss_pred HHHHHhhHHHHHHHHh-hhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhh-
Q 015068 200 RVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKR- 277 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 277 (413)
-..|.+..+..++..+ ..+++||+-. ++++++ ...+.... .+.........++...+
T Consensus 178 a~~f~ia~~~~~~~~~y~~~~l~Esl~----~~~~~~-----~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 236 (463)
T KOG2816|consen 178 ALVFLIAAASGILSLLYMLLFLPESLQ----EKERSD-----ATLRELTP------------GSLDSSHVADAFQSLTKV 236 (463)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccccC----cccccc-----ccccccCC------------Ccccchhhhhhhhhhccc
Confidence 6788888777777666 4566888732 111110 00000000 00000001111111111
Q ss_pred --hcchhHHHHHHHHHHHHHhcCch-hHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHH-HHHhhcCCcHHHHH
Q 015068 278 --KRYWFPLMIGIGLLVLQQLSGIN-GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNT-WLMDKAGRRLLLLI 351 (413)
Q Consensus 278 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g-~l~dr~g~~~~~~~ 351 (413)
++....+.....+.......... ...+|... ..++++.. ......++...++.++.. .+...++.|+....
T Consensus 237 ~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~---~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~l 313 (463)
T KOG2816|consen 237 GPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKA---KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISL 313 (463)
T ss_pred CCCccchHHHHHHHHHHHHHhcCceeEEEEEEee---ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhH
Confidence 11111212222222222221111 22233222 23776666 445555667777777666 77788899998888
Q ss_pred HhHHHHHHHHHHHHH
Q 015068 352 SSSGMAASFFLVSVA 366 (413)
Q Consensus 352 ~~~~~~~~~~~~~~~ 366 (413)
|.....+....+++.
T Consensus 314 Gl~~~~~~~~~~af~ 328 (463)
T KOG2816|consen 314 GLLSEFLQLLLFAFA 328 (463)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888888865
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.3e-11 Score=108.43 Aligned_cols=127 Identities=15% Similarity=0.168 Sum_probs=113.3
Q ss_pred hhhHHHhhh-hccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHH
Q 015068 71 PTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD-SSFLFMGRLLE 148 (413)
Q Consensus 71 ~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~ 148 (413)
...|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+.+..+..+.+++..+..+.++ .+.+.+..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 345556554 8999999999999999999999999999999999999999888888888888877774 88888899999
Q ss_pred hhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
|++.+...+...+++.|..|+++|++..++.+....+|..+++.+++.+
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887653
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=109.87 Aligned_cols=146 Identities=16% Similarity=0.179 Sum_probs=126.5
Q ss_pred chhhHHHh-hhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHH
Q 015068 70 SPTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (413)
Q Consensus 70 ~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 148 (413)
...+|.+. +++|.+...+|++.+++.+|..+|+++.+++.+|+++++.+..+.++.+++.+..+++++.+...++-++.
T Consensus 238 ~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~ 317 (524)
T PF05977_consen 238 WALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLA 317 (524)
T ss_pred HHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 34566665 56899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHh
Q 015068 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (413)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~ 215 (413)
|++.........+.+.+..|++.|||.++++.+....+..+|.++.+.+ |-+..+.+.++..++..+
T Consensus 318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~ 388 (524)
T PF05977_consen 318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSAL 388 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 9999999988999999999999999999999888888777777777766 777777776654444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.2e-10 Score=102.13 Aligned_cols=143 Identities=11% Similarity=0.080 Sum_probs=108.3
Q ss_pred hHHHhhhhccCcchhHHHHHHHH-HHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH------hcChhHHHHHH
Q 015068 73 QAEIISDLKLTISEFSIFGSLAN-VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF------SKDSSFLFMGR 145 (413)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~l~~~r 145 (413)
.+.+.+|.|.+++++|++..... ....++.++.|++.||+|+|+.+..+..+.++..+.... .++...+....
T Consensus 231 ~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (390)
T TIGR02718 231 SKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCS 310 (390)
T ss_pred hhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHH
Confidence 34455678999999999988876 466778899999999999999998877665333332221 12334445556
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCC-CcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHh
Q 015068 146 LLEGFGVGVISYTVPVYIAEIAPQ-NMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (413)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~ 215 (413)
.+.+++.+...+...+.+.+..++ +++++.+++.+....+|..++|.+++.+ ||+..|++.++..++..+
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 311 AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 666777788878888887787766 7899999999999999999999998876 788888887766555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-10 Score=110.75 Aligned_cols=136 Identities=16% Similarity=0.117 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcCh--hHHHHHHHHHhhhhhhhhhhHHHHHHhc
Q 015068 89 IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS--SFLFMGRLLEGFGVGVISYTVPVYIAEI 166 (413)
Q Consensus 89 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 166 (413)
+...+..+....+.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+..++....+..|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33445566777889999999999999999999999999988888877654 4455566777777788888889999999
Q ss_pred CCCCcchhHhhHHHHHHHHHHHHHHHhhccc--chHHHHHhhHHHHHHHHhhhccccCch
Q 015068 167 APQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFIPESP 224 (413)
Q Consensus 167 ~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--~w~~~~~~~~~~~~~~~~~~~~~~e~~ 224 (413)
+|++.|++++++.+....+|.+++|.+.+.. ++..++++.+...++..+..+++||+.
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 9999999999999999999999999988722 456677776666666666667788863
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.8e-10 Score=94.52 Aligned_cols=155 Identities=17% Similarity=0.225 Sum_probs=117.7
Q ss_pred ccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh-------cCh
Q 015068 66 CGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-------KDS 138 (413)
Q Consensus 66 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~ 138 (413)
...++..-|++++.+|+|.+|...+.+.-.+|..+| ++.|.+.|++|+|.++.+|.+...+|..+...+ .++
T Consensus 18 ~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~ 96 (250)
T PF06813_consen 18 TYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPV 96 (250)
T ss_pred ccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccch
Confidence 344455667799999999999999999999999874 889999999999999999999999999887764 356
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---c-hHHHHHhhHHHHHHHH
Q 015068 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---N-WRVLAVLGVLPCTLLI 214 (413)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~-w~~~~~~~~~~~~~~~ 214 (413)
+.+.+..++.|.+.+....+......+.|| ++||++.++.-...+++..+-..+...+ + -+..+.......++.+
T Consensus 97 ~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l 175 (250)
T PF06813_consen 97 WLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCL 175 (250)
T ss_pred HHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 777777888888877777777777778887 6899999999999999877655554443 2 3333344444444444
Q ss_pred hhhccccC
Q 015068 215 PGLFFIPE 222 (413)
Q Consensus 215 ~~~~~~~e 222 (413)
+..++++.
T Consensus 176 ~~~~~vr~ 183 (250)
T PF06813_consen 176 VAMFFVRP 183 (250)
T ss_pred HHhhheec
Confidence 44455443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-10 Score=109.19 Aligned_cols=153 Identities=18% Similarity=0.144 Sum_probs=100.6
Q ss_pred hhHHHhhhhccCcchhHH------------HHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhc---
Q 015068 72 TQAEIISDLKLTISEFSI------------FGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--- 136 (413)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~------------~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--- 136 (413)
..|.+.++.|.+..+.+. ...+..++..++.++.++++||+|||+.++.+..+.+++..+.++..
T Consensus 310 ~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~ 389 (502)
T TIGR00887 310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL 389 (502)
T ss_pred ccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356677778876543221 23334456667888999999999999999888877777766555432
Q ss_pred -ChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc--------------chHH
Q 015068 137 -DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------NWRV 201 (413)
Q Consensus 137 -~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--------------~w~~ 201 (413)
+...+...-+...++.....+....+..|.+|++.|+++.++.+....+|.++++.+.+.+ ++..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 469 (502)
T TIGR00887 390 STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH 469 (502)
T ss_pred chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchH
Confidence 1111111111111222233455667789999999999999999999999999988776544 1345
Q ss_pred HHHhhHHHHHHHHhhhccccCch
Q 015068 202 LAVLGVLPCTLLIPGLFFIPESP 224 (413)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~e~~ 224 (413)
.|++.++..++..+..+++||+.
T Consensus 470 ~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 470 VLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred HHHHHHHHHHHHHHHheEeccCC
Confidence 66666665555555556778874
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-10 Score=107.12 Aligned_cols=127 Identities=11% Similarity=0.058 Sum_probs=105.8
Q ss_pred hhhHHHhh-hhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh---cChhHHHHHHH
Q 015068 71 PTQAEIIS-DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---KDSSFLFMGRL 146 (413)
Q Consensus 71 ~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~ 146 (413)
...|.+.+ .+|.++.+.++......++..++.++.|++.||+|||+++..+..+.+++..+..+. ++.+.+.+.-+
T Consensus 282 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (471)
T PRK10504 282 FMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLF 361 (471)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 34555544 589999999999999999999999999999999999999999988888877766553 23344455677
Q ss_pred HHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
+.|++.+...+....++.+..|+++|+.+.++.+....+|..+|+.+++.+
T Consensus 362 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 362 LQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 888988888888899999999999999999999999999999998887765
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-10 Score=105.27 Aligned_cols=152 Identities=12% Similarity=-0.019 Sum_probs=97.1
Q ss_pred hhhHH-HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH--H--hcChhHHHHHH
Q 015068 71 PTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS--F--SKDSSFLFMGR 145 (413)
Q Consensus 71 ~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~l~~~r 145 (413)
..+|. +.+++|.+..+.++..++..++..+++++.|+++||+|||+.+..+..+.++...... . .++....+..-
T Consensus 264 ~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (432)
T PRK10406 264 TYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLV 343 (432)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 34555 4566899988999999988888899999999999999999988776655443332221 1 12333222222
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHH-HHHHHHHhhccc---c-hHHHHHhhHHHHHHHHhhhccc
Q 015068 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV---N-WRVLAVLGVLPCTLLIPGLFFI 220 (413)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~---~-w~~~~~~~~~~~~~~~~~~~~~ 220 (413)
.+.+++.+...+....++.|.+|++.|+++.|+.+....+ .....|.+.+.+ + |...+++.++..++..+..+++
T Consensus 344 ~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 344 MCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 2233333444455677889999999999999997755443 233355655544 3 5556665555555555544444
Q ss_pred cC
Q 015068 221 PE 222 (413)
Q Consensus 221 ~e 222 (413)
++
T Consensus 424 ~~ 425 (432)
T PRK10406 424 HR 425 (432)
T ss_pred hh
Confidence 43
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.7e-10 Score=105.87 Aligned_cols=147 Identities=15% Similarity=0.067 Sum_probs=98.9
Q ss_pred hhhHHHh-hhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhh--chh-HHHHHHHHHHHHHHHHHH--HhcChhHHHHH
Q 015068 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRK-GSLMIAAVPNIIGWLIIS--FSKDSSFLFMG 144 (413)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr-~~l~~~~~~~~~~~~~~~--~~~~~~~l~~~ 144 (413)
...|.+. +++|.+..+.++..+.+.++..++.++.|+++||+ ++| .......+...+...... ...+.....+.
T Consensus 264 ~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (434)
T PRK11663 264 DWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAAC 343 (434)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence 3445554 67899999999999999999999999999999999 333 322221111111111111 12233333344
Q ss_pred HHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhh
Q 015068 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (413)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~ 217 (413)
.+..|++...........+.|.+|+++|++..++.+....+|..++|.+.+.+ ||+..|++.++..++..+..
T Consensus 344 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~ 420 (434)
T PRK11663 344 FFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLL 420 (434)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 44445433222223345678999999999999999999999999998888766 89999988777666655443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.1e-10 Score=98.22 Aligned_cols=151 Identities=17% Similarity=0.240 Sum_probs=121.8
Q ss_pred cccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh-cChhHHHHHH
Q 015068 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-KDSSFLFMGR 145 (413)
Q Consensus 67 ~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r 145 (413)
..++.+-|.+++..|.+.+.++++.-++.++..+|+.+.|++.|| +.|+.+.....+.++..+...+. ++.+..++.-
T Consensus 229 ~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~ 307 (394)
T COG2814 229 ALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALL 307 (394)
T ss_pred hhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 344455667899999999999999999999999999999999999 99999998877777777776655 4555666667
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhhcc
Q 015068 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (413)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~ 219 (413)
++.|+..+.........+.+ ..++.++.+.+++...+++|..+|..+++.+ |+....+++++..++..+..+.
T Consensus 308 ~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 308 FLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 77888776666666666666 4468899999999999999999999888776 8888889888877777665444
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-10 Score=100.64 Aligned_cols=174 Identities=21% Similarity=0.186 Sum_probs=140.5
Q ss_pred hHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHH
Q 015068 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (413)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 128 (413)
-...+++.-..+.++.+. .+...-..-.+++|++..+...+.....+..++|++++|++.||+|.|+++..+.++..+.
T Consensus 253 ~i~~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHH
Confidence 444455555556666443 2222222234589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHH
Q 015068 129 WLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLA 203 (413)
Q Consensus 129 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~ 203 (413)
++..-+...-..+.++-.+.|...|+.+....++..+..|++|-++.+|+++.....+..+||.+-+.+ +-|.-+
T Consensus 332 ~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~ 411 (438)
T COG2270 332 ALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV 411 (438)
T ss_pred HHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence 988888887778888899999999999999999999999999999999999999999999999988766 566666
Q ss_pred HhhHHHHHHHHhhhccccCc
Q 015068 204 VLGVLPCTLLIPGLFFIPES 223 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~ 223 (413)
....++..+..+..+.+|++
T Consensus 412 ~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 412 LSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHhhHhhEEeecCC
Confidence 55555555555566666654
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-10 Score=108.31 Aligned_cols=145 Identities=11% Similarity=0.035 Sum_probs=105.3
Q ss_pred HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchh-------HHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHH
Q 015068 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK-------GSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (413)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 148 (413)
+.+++|.+..+.+.+.+++.++..++.++.|+++||+||| ........+.++..++....++.....+.-++.
T Consensus 279 l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~ 358 (476)
T PLN00028 279 FYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILF 358 (476)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 4667899999999999999999999999999999999876 223333333334444445555665555666677
Q ss_pred hhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhcc---cchHHHHHhhHHHHHHHHhhhcccc
Q 015068 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF---VNWRVLAVLGVLPCTLLIPGLFFIP 221 (413)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~---~~w~~~~~~~~~~~~~~~~~~~~~~ 221 (413)
+++.+...+...+++.+..| ++|+...++.+.+..+|..+++.+.+. .+|+..|++.++..++..++.++.+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 359 SIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 77666666666666666554 789999999988888888888877542 2699999888776666666555543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-10 Score=104.86 Aligned_cols=146 Identities=15% Similarity=0.054 Sum_probs=113.0
Q ss_pred hhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh-cChhHHHHHHHHHhhhhhhhh
Q 015068 78 SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-KDSSFLFMGRLLEGFGVGVIS 156 (413)
Q Consensus 78 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~ 156 (413)
++.+.+....++..+...+.....+++.|++.||+++|+.+..+..+..++.+...++ ++.+.++++.++.|+|.+...
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 316 (395)
T PRK10054 237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA 316 (395)
T ss_pred cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888888999999999999999999988888888777764 567777788999999998888
Q ss_pred hhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhh-hccccCch
Q 015068 157 YTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESP 224 (413)
Q Consensus 157 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 224 (413)
|.....+.+..|++.|++..+..+ ...+|..+||.+++.+ |....|++.+....+..+. ....+|+|
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARP 388 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence 888899999999999999988655 4557888888888776 6666676655544444433 33344443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-10 Score=105.55 Aligned_cols=131 Identities=16% Similarity=0.192 Sum_probs=94.8
Q ss_pred hhHH-HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhch-hHHHH-HHH-HHHHHHHHHHHH--hcChhHHHHHH
Q 015068 72 TQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLM-IAA-VPNIIGWLIISF--SKDSSFLFMGR 145 (413)
Q Consensus 72 ~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~-~~~-~~~~~~~~~~~~--~~~~~~l~~~r 145 (413)
..|. +.+++|.+..+.++..+...++..++.++.|++.||.++ |+... ... ....++...... ..+.....+..
T Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (379)
T TIGR00881 238 WSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICL 317 (379)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 3444 456789999999999999999999999999999998643 33222 221 222222222222 23455566677
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHH
Q 015068 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (413)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~ 202 (413)
++.|+......+....++.|..|+++|+++.++.+....+|..++|.+.+.+ ||++.
T Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 318 FALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred HHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 7788766666666678899999999999999999999999999998887766 66654
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.8e-10 Score=103.31 Aligned_cols=115 Identities=23% Similarity=0.342 Sum_probs=97.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHhhhhhhhhhhHHH
Q 015068 83 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRLLEGFGVGVISYTVPV 161 (413)
Q Consensus 83 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~ 161 (413)
+..+.+++.++..++..++.+++++++||+|+|+++..+..+.+++.+...+.+ +.+.+.+..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999999999999999999999999999888888887776653 5667777888999999999999999
Q ss_pred HHHhcCC-------CCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 162 YIAEIAP-------QNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 162 ~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
+++|..+ ++++|...++.+....+|..+++.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 45679999999999999998888887665
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-10 Score=107.08 Aligned_cols=152 Identities=11% Similarity=0.073 Sum_probs=96.7
Q ss_pred hhHHHh-hhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHH---HHHHHHHHh--cChhHHHHHH
Q 015068 72 TQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI---IGWLIISFS--KDSSFLFMGR 145 (413)
Q Consensus 72 ~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~~~~--~~~~~l~~~r 145 (413)
..|.+. +..|.++.+.++..+.+.++..++.++.|+++||+|+++....+..+.. ++.+..... .+.+...+.-
T Consensus 273 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (438)
T TIGR00712 273 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICM 352 (438)
T ss_pred hHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 445444 4579999999999999999999999999999999975432222322221 222222222 2333333444
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHH-HHHHHHhhccc----chHHHHHhhHHHHHHHHh-hhcc
Q 015068 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG-IMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFF 219 (413)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~-~~~~ 219 (413)
++.|++.............|.+|+++|+++.|+.+....+| ..++|.+.+.+ ||...+++.....++..+ ..+.
T Consensus 353 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T TIGR00712 353 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 432 (438)
T ss_pred HHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 55554432222222346779999999999999998776665 45677776655 788888876665555544 4555
Q ss_pred ccCc
Q 015068 220 IPES 223 (413)
Q Consensus 220 ~~e~ 223 (413)
+||+
T Consensus 433 ~~~~ 436 (438)
T TIGR00712 433 MIGE 436 (438)
T ss_pred Hhhc
Confidence 6665
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-10 Score=106.50 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=143.7
Q ss_pred HhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhc--hhHHHHHHHHHHHHHHHHHHHhcC
Q 015068 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG--RKGSLMIAAVPNIIGWLIISFSKD 137 (413)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~ 137 (413)
....+...+....+|.+.++.+.+..+.+.+.++..+...++.++.|+++|+.. ++.+..+++++.+++.+.+.++++
T Consensus 308 ~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~ 387 (509)
T KOG2504|consen 308 LFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATT 387 (509)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333445555566788889999999999999999999999999999999999988 566777888888899999999999
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhHHHHHH
Q 015068 138 SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTL 212 (413)
Q Consensus 138 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~ 212 (413)
++.+...-.+.|++.|........++.|..+.++-..+.|+.....+++..+||.+++.+ +|...|+.+++..++
T Consensus 388 ~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~ 467 (509)
T KOG2504|consen 388 YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLL 467 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHH
Confidence 999999999999999999988888999999999999999999999999999999999987 599999998888887
Q ss_pred HHhhhcccc
Q 015068 213 LIPGLFFIP 221 (413)
Q Consensus 213 ~~~~~~~~~ 221 (413)
..+.++..+
T Consensus 468 s~~~~~~~~ 476 (509)
T KOG2504|consen 468 SAVLLLILR 476 (509)
T ss_pred HHHHHHHhH
Confidence 777776665
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-09 Score=99.23 Aligned_cols=136 Identities=13% Similarity=0.180 Sum_probs=106.9
Q ss_pred HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh-----cChhHHHHHHHHHhh
Q 015068 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----KDSSFLFMGRLLEGF 150 (413)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~ 150 (413)
+.+++|.++.+.++......++..++.++.|+++||+|+|+.+..+.++..++.++.... ++.+.+++.-++.|+
T Consensus 242 ~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (406)
T PRK15402 242 LISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAF 321 (406)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 456789999999998888888999999999999999999999999888887777776653 356667788899999
Q ss_pred hhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHH
Q 015068 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTL 212 (413)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~ 212 (413)
+.+...+......... ++++||+..+..+....+|..+|+.+++.+ ++....+..++..++
T Consensus 322 g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 386 (406)
T PRK15402 322 GIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLL 386 (406)
T ss_pred HHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHH
Confidence 9988777666655443 458899999999999999999999988877 444444444433333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-09 Score=99.79 Aligned_cols=142 Identities=16% Similarity=0.164 Sum_probs=96.7
Q ss_pred HHHhhhhccCcchhHHHHHHHH-HHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHH---HHh-cChhHHHHHH---
Q 015068 74 AEIISDLKLTISEFSIFGSLAN-VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFS-KDSSFLFMGR--- 145 (413)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r--- 145 (413)
+.+.+++|.++++.+++.+... ++..++.++.|++.||+|+|+.+..+..+..+..+.. +.. ++.+.+.++-
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE 313 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 3467779999999999986654 5688999999999999999998887776666554433 343 4555555544
Q ss_pred -HHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHH----HHHHhhcccchHHHHHhhHHHHHHHHhhhcc
Q 015068 146 -LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIM----LAYLLGLFVNWRVLAVLGVLPCTLLIPGLFF 219 (413)
Q Consensus 146 -~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~----~~~~i~~~~~w~~~~~~~~~~~~~~~~~~~~ 219 (413)
+..|++.+...+....++.+.+|.++++. .+...++|.. ++..+...+||+..|.+.++.+++.++....
T Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 314 NLCGGMGTAAFVALLMALCNRSFSATQYAL----LSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777777777777655544 3333344444 3333344449999999888777666555433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-09 Score=100.11 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=92.0
Q ss_pred cchhhHHHhh-hhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHH-H-H--HhcChhHHHH
Q 015068 69 SSPTQAEIIS-DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI-I-S--FSKDSSFLFM 143 (413)
Q Consensus 69 ~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~-~-~--~~~~~~~l~~ 143 (413)
.....|.+.+ .+|.+..+.++....+.++..++.++.|+++||+|||++++.+.++..+.... . . ..+++....+
T Consensus 257 ~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (434)
T PRK15075 257 ITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLA 336 (434)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 3344565554 48999999999999999999999999999999999999988765544332221 1 1 1234444445
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHH-HHHHHHHHHHHHhhccc
Q 015068 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~ 197 (413)
..++.|++.+...+....++.|.+|+++|++..++.. .+..++..++|.+.+.+
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i 391 (434)
T PRK15075 337 VELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL 391 (434)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence 5666677777777777788999999999999999854 34444456677766554
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.5e-10 Score=101.07 Aligned_cols=114 Identities=11% Similarity=0.196 Sum_probs=95.2
Q ss_pred hhhHHHhhhhccCcchhHHHHHHHH-HHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh-----------cCh
Q 015068 71 PTQAEIISDLKLTISEFSIFGSLAN-VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----------KDS 138 (413)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----------~~~ 138 (413)
...|.+.+++|.+.++.+.+.++.. ++..++.+++|++.||+|||+.++.+.++.+++..+..+. ++.
T Consensus 230 ~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (356)
T TIGR00901 230 VLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHL 309 (356)
T ss_pred HHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 4455555669999999998887766 6778999999999999999999998888887776655543 345
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHH
Q 015068 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVT 184 (413)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 184 (413)
+.+..+.++.+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 310 LMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 6777789999999999999999999999999999999999877554
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-09 Score=97.29 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=111.2
Q ss_pred chhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhc---Chh------H
Q 015068 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK---DSS------F 140 (413)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~------~ 140 (413)
...-..+-++-|++..+..++.........+..+++..+.||+|||+.++.+..+..+..++..... +.. .
T Consensus 290 ~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~ 369 (485)
T KOG0569|consen 290 FFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYL 369 (485)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344567888899999999999999999999999999999999999999999988888887766532 111 1
Q ss_pred HHHHHHHHhhhhhh-hhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHH----HhhcccchHHHHHhhHHHHHHHHh
Q 015068 141 LFMGRLLEGFGVGV-ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY----LLGLFVNWRVLAVLGVLPCTLLIP 215 (413)
Q Consensus 141 l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~----~i~~~~~w~~~~~~~~~~~~~~~~ 215 (413)
.+++.++..++.+. ..|...-+.+|.+|++.|..++++.....-++.++-. .+...+|= +.|+...+++++..+
T Consensus 370 ~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i 448 (485)
T KOG0569|consen 370 CIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLI 448 (485)
T ss_pred HHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHH
Confidence 23344444433332 3577788999999999999999887777666655433 33333333 556666666555554
Q ss_pred -hhccccCch
Q 015068 216 -GLFFIPESP 224 (413)
Q Consensus 216 -~~~~~~e~~ 224 (413)
.++.+||+.
T Consensus 449 ~~~~~lPETk 458 (485)
T KOG0569|consen 449 YLYRYLPETK 458 (485)
T ss_pred HHHHhCcccC
Confidence 566699984
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.7e-09 Score=96.48 Aligned_cols=139 Identities=9% Similarity=0.071 Sum_probs=107.7
Q ss_pred hHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhh
Q 015068 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGV 152 (413)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 152 (413)
.|.+.+++|.+..+.+...+.+.++..++.++.+++.||.+++..+....+...+..++....++.+.+.+..++.|++.
T Consensus 240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~ 319 (394)
T PRK10213 240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTF 319 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 46677888999999999999999999999999999999965444444334434444555556677788888899999999
Q ss_pred hhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHH
Q 015068 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTL 212 (413)
Q Consensus 153 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~ 212 (413)
+...+...+++.+..| +++++..++......+|..+|+.+++.+ |++..++.+++..++
T Consensus 320 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~ 382 (394)
T PRK10213 320 ALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL 382 (394)
T ss_pred HhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence 9999989989998887 5566777777777788888888888776 778777776654433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.3e-09 Score=99.34 Aligned_cols=126 Identities=15% Similarity=0.127 Sum_probs=104.8
Q ss_pred hhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHh-hhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhh
Q 015068 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE-YIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (413)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (413)
..|.+.++.+.++.+.+++.++..++...+..+.+++.| |++.|+.+..+.++.+++.++.+.+++++.+.+..++.|+
T Consensus 230 ~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 309 (400)
T PRK11646 230 MLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYI 309 (400)
T ss_pred hhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455565665557788899988888777766666666665 5777777788888888888888888888888888889999
Q ss_pred hhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
+.+...|...+++.|..|+++||+.+++.+....+|..+||.+++.+
T Consensus 310 g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l 356 (400)
T PRK11646 310 GSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWL 356 (400)
T ss_pred HHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHH
Confidence 99888899999999999999999999999999999999999998877
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.1e-09 Score=93.71 Aligned_cols=126 Identities=15% Similarity=0.073 Sum_probs=100.0
Q ss_pred hhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhh
Q 015068 79 DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 158 (413)
Q Consensus 79 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 158 (413)
.+|.++++.++..+.+..+..+|.++.+++.||+|+|+.+.++..+..++.++....++... ..+-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999998888888887766666555433 34666889999999999
Q ss_pred HHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhH
Q 015068 159 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGV 207 (413)
Q Consensus 159 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~ 207 (413)
..+...+..+++ .+.+.++. ....+|..++|.+.+.+ |.+..|++..
T Consensus 251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 999998888743 45566665 45667888888866655 6677776443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.5e-09 Score=94.87 Aligned_cols=118 Identities=17% Similarity=0.293 Sum_probs=95.5
Q ss_pred HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh-----cChhHHHHHHHHHhh
Q 015068 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----KDSSFLFMGRLLEGF 150 (413)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~ 150 (413)
+.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.++.... ++...+....++.|+
T Consensus 233 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 312 (385)
T TIGR00710 233 YIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGI 312 (385)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999988887777777666543 233455556788899
Q ss_pred hhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHH-HHHHHHHHhh
Q 015068 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVT-IGIMLAYLLG 194 (413)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~i~ 194 (413)
+.+...+.......|..| ++|+++.++.+.... .|...++.++
T Consensus 313 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 313 GNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888876 678999998776554 5666666666
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.9e-10 Score=102.83 Aligned_cols=141 Identities=11% Similarity=0.090 Sum_probs=96.8
Q ss_pred cchhhHHHhhhh--ccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHH-HHHHHHHHHHHHHHHHHhcChhHHHHHH
Q 015068 69 SSPTQAEIISDL--KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS-LMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (413)
Q Consensus 69 ~~~~~~~i~~~~--~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~~~~~~~~~~~~l~~~r 145 (413)
+...+|.+.+++ +.+..+.+...+...++..++.++.|+++||++||+. .....++..++..+.....+....+++-
T Consensus 261 ~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (412)
T TIGR02332 261 INIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGI 340 (412)
T ss_pred HHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 445667777764 5677888999999999999999999999999997775 3444444444433322233322222222
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhHHH
Q 015068 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLP 209 (413)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~ 209 (413)
.+.+++.....+.......|.+|+++|++++|+.+....+|..++|.+.+.+ +|++.+++.++.
T Consensus 341 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 341 IMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 2333333333344445556788999999999999999999999999888766 589888766553
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.7e-09 Score=97.44 Aligned_cols=142 Identities=11% Similarity=0.175 Sum_probs=103.9
Q ss_pred hHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH-hcChhHHHHHHHHHhhh
Q 015068 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-SKDSSFLFMGRLLEGFG 151 (413)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~ 151 (413)
.|.+.+.+|.++.+.++..+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+...+..++.+++
T Consensus 223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g 302 (382)
T PRK10091 223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAG 302 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34566678999999999999999999999999999999999999999888888887766543 45556666667777776
Q ss_pred hhhhhhhHHH-HHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhHHHHHHHHhh
Q 015068 152 VGVISYTVPV-YIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPG 216 (413)
Q Consensus 152 ~g~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~ 216 (413)
.....+.... ...+..+++.++.. ..+....+|..+||.+++.+ +|++.+.+.++..++.+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 303 LFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS 371 (382)
T ss_pred HHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence 5554444343 34444444445544 33566778888888888765 7888888877665555443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.7e-09 Score=95.38 Aligned_cols=144 Identities=16% Similarity=0.146 Sum_probs=117.8
Q ss_pred hccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhH
Q 015068 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTV 159 (413)
Q Consensus 80 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 159 (413)
-+.++...|.+.++.-+.-++...+..++.+|+|.|+.++++..+.++=.+++++++|.+.+.+.+.+.|+-.+......
T Consensus 254 ~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~ 333 (412)
T PF01306_consen 254 AGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAA 333 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcchhHhhHH-HHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHh-hhccccCc
Q 015068 160 PVYIAEIAPQNMRGSLGSVN-QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIPES 223 (413)
Q Consensus 160 ~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~-~~~~~~e~ 223 (413)
..|+++.+|+|..++...+. +....+|..+.+.+++.+ |.+..|++.+.+.+...+ ..+.++++
T Consensus 334 fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 334 FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 99999999988877777774 677888888888888777 888888776665555444 45555543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-08 Score=94.01 Aligned_cols=155 Identities=20% Similarity=0.335 Sum_probs=120.5
Q ss_pred cchhhHHHhhhhc-cCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh-cChhHHHH---
Q 015068 69 SSPTQAEIISDLK-LTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-KDSSFLFM--- 143 (413)
Q Consensus 69 ~~~~~~~i~~~~~-~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~--- 143 (413)
+....+...+|.| .+....+.+.++..++-.+.-.+.+++..|+|.|+++.++.+..++=..+.+.. ++.+...+
T Consensus 226 ~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~ 305 (400)
T PF03825_consen 226 YYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQL 305 (400)
T ss_pred HHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 3344455677777 677778888888888888999999999999999999999999999988888887 55444333
Q ss_pred -HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHH-HHHHHHHHHHHhhccc----------chHHHHHhhHHHHH
Q 015068 144 -GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQL-SVTIGIMLAYLLGLFV----------NWRVLAVLGVLPCT 211 (413)
Q Consensus 144 -~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~i~~~~----------~w~~~~~~~~~~~~ 211 (413)
...++|+..+..+.....++.+..|++.|+++.+++.. ..++|..+|..+++++ .|...+.+.+...+
T Consensus 306 l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~ 385 (400)
T PF03825_consen 306 LGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMAL 385 (400)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHH
Confidence 34569999999999999999999999999999999876 4789999999999887 24455555555544
Q ss_pred HHHh-hhccccCc
Q 015068 212 LLIP-GLFFIPES 223 (413)
Q Consensus 212 ~~~~-~~~~~~e~ 223 (413)
+..+ .+++.+|+
T Consensus 386 ~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 386 VILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHhhccCC
Confidence 4444 33444443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-09 Score=114.08 Aligned_cols=134 Identities=16% Similarity=0.200 Sum_probs=115.7
Q ss_pred HHhhhhccCcc-hhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhh
Q 015068 75 EIISDLKLTIS-EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVG 153 (413)
Q Consensus 75 ~i~~~~~~s~~-~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 153 (413)
.+.+++|.+.. +.+++.+...++..+++++.|+++||+++|+.+.++.++.+++.++..+..+.+.++++.++.|++.+
T Consensus 258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 337 (1146)
T PRK08633 258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAG 337 (1146)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45677899998 99999999999999999999999999999999999988888888888888888888899999999999
Q ss_pred hhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhHH
Q 015068 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVL 208 (413)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~ 208 (413)
...+...+++.+..|+++||+++++.+....+|..+++.++..+ ++...+++.+.
T Consensus 338 ~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 338 LFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999999999999999999999998888887777766544 34445554443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.3e-10 Score=96.06 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcch
Q 015068 94 ANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRG 173 (413)
Q Consensus 94 ~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 173 (413)
..+.-.-|.++.+.+.||+|||+.+..+.+++++..++...+.+-....+.-+..-++..+.+.+.+.|..|.+|.+.|+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence 34566678999999999999999999999999999999888776544444444444445556677888999999999999
Q ss_pred hHhhHHHHHHHHHHHHHHHhhccc--chHHHHHhhHHHHHHHHhhhccccCc
Q 015068 174 SLGSVNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFIPES 223 (413)
Q Consensus 174 ~~~~~~~~~~~~g~~~~~~i~~~~--~w~~~~~~~~~~~~~~~~~~~~~~e~ 223 (413)
...|.......+|.++.|+++--. +-..+..+.+...++..++..++|-+
T Consensus 470 tgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeec
Confidence 999999999999999999998322 22233444444455555556666644
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=99.04 Aligned_cols=123 Identities=21% Similarity=0.319 Sum_probs=105.8
Q ss_pred cchhhHHH-hhhhccC-cchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh---cChhHHHH
Q 015068 69 SSPTQAEI-ISDLKLT-ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---KDSSFLFM 143 (413)
Q Consensus 69 ~~~~~~~i-~~~~~~s-~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~ 143 (413)
.....|.+ .+++|.+ ..+.++..++..++..++.++.|++.||+|+|+..........++.+..... ++....++
T Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (352)
T PF07690_consen 225 FSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLII 304 (352)
T ss_dssp HHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHH
T ss_pred hhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44566665 8889999 7899999999999999999999999999999888777777666666665443 35577777
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHH
Q 015068 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY 191 (413)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 191 (413)
.-++.|++.+...+....++.|..|+++||++.++.+....+|..+||
T Consensus 305 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 305 ALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 889999999999999999999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.6e-09 Score=92.89 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=119.9
Q ss_pred HHhHHHHhhhccccccchhhH-HHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhh--chhHHHH-HHHHHHHHHH
Q 015068 54 VVALGPIQFGFTCGYSSPTQA-EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSLM-IAAVPNIIGW 129 (413)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~-~~~~~~~~~~ 129 (413)
.++++++..++.+..+.--.| .+.|..|.|..+.++..+++-.+...|.+++|+++||+ |||.... +.+++..++.
T Consensus 256 ~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~ 335 (448)
T COG2271 256 LLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASL 335 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 334444444444444444444 35677899999999999999999999999999999995 7776554 4455555555
Q ss_pred HHHHHhcC--hhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHH-HHHHHHHhhccc----chHHH
Q 015068 130 LIISFSKD--SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----NWRVL 202 (413)
Q Consensus 130 ~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~----~w~~~ 202 (413)
+..-.+++ +....++-++.|+..-+..-.......|..|++--|.+.|+.+....+ |...+...-+.+ ||...
T Consensus 336 ~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~ 415 (448)
T COG2271 336 VLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGG 415 (448)
T ss_pred HHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcch
Confidence 55666664 477778888899876666666667788999999999999999988888 777776665555 89999
Q ss_pred HHhhHHHHHHHHhh
Q 015068 203 AVLGVLPCTLLIPG 216 (413)
Q Consensus 203 ~~~~~~~~~~~~~~ 216 (413)
|++..+.+++..++
T Consensus 416 Fi~~~~~a~l~~ll 429 (448)
T COG2271 416 FIVLSIAALLAILL 429 (448)
T ss_pred HHHHHHHHHHHHHH
Confidence 88766655555443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-09 Score=102.61 Aligned_cols=126 Identities=13% Similarity=0.165 Sum_probs=107.8
Q ss_pred hhHHH-hhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH--h--cChhHHHHHHH
Q 015068 72 TQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF--S--KDSSFLFMGRL 146 (413)
Q Consensus 72 ~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~--~~~~~l~~~r~ 146 (413)
..|.+ ++.+|.++.+.++......++..++.++.|++.||+|||+.+..+..+.+++..+..+ . .+++.+....+
T Consensus 277 ~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (485)
T TIGR00711 277 LLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQF 356 (485)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 44544 4558999999999999999999999999999999999999999999888888887763 2 34566777789
Q ss_pred HHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
+.|++.+...+.......+..|+++|+++.++.+....+|..+|+.+.+.+
T Consensus 357 l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 357 IRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI 407 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887788888889999999999999999999999998887654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-09 Score=97.25 Aligned_cols=126 Identities=14% Similarity=0.093 Sum_probs=100.4
Q ss_pred hhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhh-chhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHh
Q 015068 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (413)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (413)
...|.+.++.|.+..+.+.+.+...++..++.++.|++.||+ +||+.+..+..+.+++.+...+.++..... .-++.|
T Consensus 218 ~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g 296 (355)
T TIGR00896 218 GWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLG 296 (355)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHH
Confidence 345667777899999999999999999999999999999999 567777788888888877777665543332 457889
Q ss_pred hhhhhhhhhHHHHHHhcCC-CCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 150 FGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+
T Consensus 297 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 297 LGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred HhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888777776554 46678888888888888888888887765
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-07 Score=90.97 Aligned_cols=146 Identities=12% Similarity=0.156 Sum_probs=116.6
Q ss_pred hhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHhcC--------hhHH
Q 015068 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKD--------SSFL 141 (413)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~l 141 (413)
.....+.+.+|.+.++...+...+....-+...++|.++|+ +||++.+..+.++..+|.++.+++.. ....
T Consensus 9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~ 88 (654)
T TIGR00926 9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD 88 (654)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence 34445667789999999999999988889999999999997 69999999999999999988877521 1235
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCCCCc---chhHhhHHHHHHHHHHHHHHHhhccc-----------chHHHHHhhH
Q 015068 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNM---RGSLGSVNQLSVTIGIMLAYLLGLFV-----------NWRVLAVLGV 207 (413)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~i~~~~-----------~w~~~~~~~~ 207 (413)
+++-.+..+|.|+.-+...+...|.+++++ |.+...++..+.++|..+++.+..++ +|...|.+.+
T Consensus 89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~ 168 (654)
T TIGR00926 89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA 168 (654)
T ss_pred HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence 667788888999999999999999997543 56678888888899988887765443 4888888877
Q ss_pred HHHHHHHhh
Q 015068 208 LPCTLLIPG 216 (413)
Q Consensus 208 ~~~~~~~~~ 216 (413)
+..++..+.
T Consensus 169 i~m~ia~lv 177 (654)
T TIGR00926 169 ILMILALIV 177 (654)
T ss_pred HHHHHHHHH
Confidence 766665544
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.6e-09 Score=96.02 Aligned_cols=122 Identities=13% Similarity=0.080 Sum_probs=101.6
Q ss_pred HHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhh
Q 015068 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGV 154 (413)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 154 (413)
.+++.+|.++.+.|++.+...++..+++++.+++.||.++|+++..+. +.++..++.++.++++...+.-++.|++.+.
T Consensus 231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~ 309 (393)
T PRK11195 231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGF 309 (393)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 456678999999999999999999999999999999999998888775 4445555556677777777788899999988
Q ss_pred hhhhHHHHHHhcCCCCc-chhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 155 ISYTVPVYIAEIAPQNM-RGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 155 ~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
..+...+.+.+..|++. +|++.++.+....+|..++..+.+.+
T Consensus 310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 310 FVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred hhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 88888888888766654 79999999999999988888877655
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.9e-08 Score=90.52 Aligned_cols=121 Identities=20% Similarity=0.137 Sum_probs=88.5
Q ss_pred HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHH---HH-hcChhHHHHHHHHHhhh
Q 015068 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SF-SKDSSFLFMGRLLEGFG 151 (413)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~-~~~~~~l~~~r~l~G~~ 151 (413)
+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..+..+.. .. ..+++.+.++-.+.+.+
T Consensus 221 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T PRK11102 221 YIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGC 300 (377)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 556689999999999999999999999999999999999999988876544433322 22 23455555555555555
Q ss_pred hhhhhhhHHHHHHhcCCCCcchhHhhHHHHH-HHHHHHHHHHhhccc
Q 015068 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLS-VTIGIMLAYLLGLFV 197 (413)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~i~~~~ 197 (413)
.+........++.|..| ++|+++.++.+.. ..+|..+++.++...
T Consensus 301 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~~ 346 (377)
T PRK11102 301 VSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLAP 346 (377)
T ss_pred HHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55666666677777766 7899998886553 567777888776443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-08 Score=94.76 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=96.5
Q ss_pred hhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhc--ChhHHHHHHHHHhhhhhh
Q 015068 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGV 154 (413)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~ 154 (413)
++.+|.+....++......++..++.++.+++.||+|+|+.+.++.++..++.++..+.+ +++.+.+..++.|+|.+.
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGV 335 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 445676655555555555677888999999999999999999999988888887777654 566677778899999999
Q ss_pred hhhhHHHHHHhcCCCC-------cchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 155 ISYTVPVYIAEIAPQN-------MRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 155 ~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
..+...++..|..|.+ ++|...+..+....+|..+|+.+.+.+
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888643 358889999998889988887776543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.5e-09 Score=98.52 Aligned_cols=150 Identities=15% Similarity=0.106 Sum_probs=100.8
Q ss_pred chhhHHH-hhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHH--------HHHHHHHH--HHHHHHHHH-hcC
Q 015068 70 SPTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS--------LMIAAVPN--IIGWLIISF-SKD 137 (413)
Q Consensus 70 ~~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~--------l~~~~~~~--~~~~~~~~~-~~~ 137 (413)
...+|.+ .+++|.+..+.++..++..++..++.++.|+++||+++|+. +..+.... ++..+.... ..+
T Consensus 281 ~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (465)
T TIGR00894 281 PTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAA 360 (465)
T ss_pred HHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3445554 56689999999999999999999999999999999875521 11111111 111111222 234
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-------chHHHHHhhHHHH
Q 015068 138 SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-------NWRVLAVLGVLPC 210 (413)
Q Consensus 138 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-------~w~~~~~~~~~~~ 210 (413)
....+++-.+.+.+.+...+.......|..| +.+|...++.+....+|..++|.+.+.+ +|+..|++.++..
T Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~ 439 (465)
T TIGR00894 361 FYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVN 439 (465)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHH
Confidence 4444445555555555555555555567666 4899999999999999999999888765 3888888877766
Q ss_pred HHHHhhhccc
Q 015068 211 TLLIPGLFFI 220 (413)
Q Consensus 211 ~~~~~~~~~~ 220 (413)
++..+...+.
T Consensus 440 ~i~~i~~~~~ 449 (465)
T TIGR00894 440 ILCVIFYLIF 449 (465)
T ss_pred HHHHHHeeee
Confidence 6666554444
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-09 Score=94.58 Aligned_cols=151 Identities=15% Similarity=0.270 Sum_probs=111.3
Q ss_pred hhhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHh----hhchhHHHHHH
Q 015068 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGRKGSLMIA 121 (413)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l~~~ 121 (413)
++...+..+.+-..|......++..| +..++|++....+.+--+.-+...+.+++.|..+| ||||||.++..
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tP----yl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~ 107 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTP----YLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILA 107 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccH----HHHHcCCCcccccccccccccccceecccccccccccccccccccchHHH
Confidence 34444444444445555555555444 67788988888888877788888899999999999 48988887754
Q ss_pred -HHHHHHHHHHHHHhcChh-----------------HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchh-HhhHHHHH
Q 015068 122 -AVPNIIGWLIISFSKDSS-----------------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS-LGSVNQLS 182 (413)
Q Consensus 122 -~~~~~~~~~~~~~~~~~~-----------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~ 182 (413)
.++.+++.++.+++.++. .++++--+.=++.......+-+++.|...++++.+ +++.+...
T Consensus 108 ~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f 187 (498)
T KOG0637|consen 108 GSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFF 187 (498)
T ss_pred hhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHH
Confidence 677777777777765432 34444445555666778888999999997666666 99999999
Q ss_pred HHHHHHHHHHhhcccchH
Q 015068 183 VTIGIMLAYLLGLFVNWR 200 (413)
Q Consensus 183 ~~~g~~~~~~i~~~~~w~ 200 (413)
.++|..+|..++.+.+|+
T Consensus 188 ~avGnvLGY~~g~y~~~~ 205 (498)
T KOG0637|consen 188 MAVGNVLGYALGSYLGLY 205 (498)
T ss_pred HHhcceeeeecccccCce
Confidence 999999999999888765
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-08 Score=93.38 Aligned_cols=130 Identities=14% Similarity=0.139 Sum_probs=92.7
Q ss_pred HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhh
Q 015068 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVI 155 (413)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 155 (413)
+.+++|.++.+.+.+.+...++..++.++.+++.||+|||+.+..+.++..++.++..+.++.......-.+.+.+.+..
T Consensus 230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 309 (392)
T PRK10473 230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVG 309 (392)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999988888888877766554455445545544444
Q ss_pred hhhHHHHHHhcCCCCcc-hhHhhHHHHHHHHHHHHHHHhhcccchHHHHHhhH
Q 015068 156 SYTVPVYIAEIAPQNMR-GSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGV 207 (413)
Q Consensus 156 ~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~i~~~~~w~~~~~~~~ 207 (413)
.+. ....+..|.++| +.+.++...+..+|..+++.+.+.+++.....+.+
T Consensus 310 ~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~ 360 (392)
T PRK10473 310 FGV--AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIG 360 (392)
T ss_pred hHH--HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 333 233444454433 55666666666677777777776666654444333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.7e-09 Score=110.49 Aligned_cols=137 Identities=12% Similarity=0.036 Sum_probs=111.5
Q ss_pred hhHHH-hhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh---------------
Q 015068 72 TQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--------------- 135 (413)
Q Consensus 72 ~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------------- 135 (413)
..|.+ .+.+|.+..+.|++.+.+.++..+++++.|+++|+.++++.+..+.++.+++.+..++.
T Consensus 247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (1140)
T PRK06814 247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL 326 (1140)
T ss_pred HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence 34444 45589999999999999999999999999999998887777666666666655544443
Q ss_pred -----cChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHh
Q 015068 136 -----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVL 205 (413)
Q Consensus 136 -----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~ 205 (413)
++.+.+.++.++.|++.+...+...+++.+.+|+++||+++|..+....+|..+++++.+.+ ++...+++
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~ 406 (1140)
T PRK06814 327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILF 406 (1140)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 67778888899999999999999999999999999999999999999999988888877655 45555554
Q ss_pred hHH
Q 015068 206 GVL 208 (413)
Q Consensus 206 ~~~ 208 (413)
.++
T Consensus 407 ~~~ 409 (1140)
T PRK06814 407 IAL 409 (1140)
T ss_pred HHH
Confidence 433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.3e-09 Score=88.37 Aligned_cols=121 Identities=12% Similarity=0.044 Sum_probs=99.3
Q ss_pred HHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHH-HHHHhcChhHHHHHHHHHhhhhh
Q 015068 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL-IISFSKDSSFLFMGRLLEGFGVG 153 (413)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~g 153 (413)
..++.+|+|+...+.+.+..+...++.+++.|.++||+|++-..+.+.++..+..- ...+ +++.=.++..+.|+...
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYS 367 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHH
Confidence 47899999999999999999999999999999999999999888877655554432 2222 33333567778888877
Q ss_pred hhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
.........++...|+++.|++.+..+...++|..+.|++++.+
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i 411 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI 411 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence 66665677788888889999999999999999999999999888
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.2e-09 Score=99.82 Aligned_cols=123 Identities=13% Similarity=0.098 Sum_probs=107.3
Q ss_pred HHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh---cChhHHHHHHHHHhhh
Q 015068 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---KDSSFLFMGRLLEGFG 151 (413)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~ 151 (413)
.+++.+|.|+.+.|.....+.++..++.++.|++.||+|+|+.+..+.++..++.++.... ++.+......++.|+|
T Consensus 285 ~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g 364 (495)
T PRK14995 285 ELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFS 364 (495)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 3566689999999999999999999999999999999999999998988888877665442 3555667788999999
Q ss_pred hhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
.|...+.....+.+..|+++++.+.++++....+|..+|+.+.+.+
T Consensus 365 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 365 AASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred HHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988899999999999999999999999999999998887653
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-08 Score=92.91 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=113.8
Q ss_pred hhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhc-----hhHHHHHHHHHHHHHHHHHHHhc----ChhHH
Q 015068 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG-----RKGSLMIAAVPNIIGWLIISFSK----DSSFL 141 (413)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~~~~~~~~~~~~~----~~~~l 141 (413)
+..|.+++++|+++++.....++..+...+ .++.|.++|-+- ||+-++++.++..++.+..+..+ +....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 456678999999999999988888887754 678999999863 55556667777766666555533 46666
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCC--CCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHh
Q 015068 142 FMGRLLEGFGVGVISYTVPVYIAEIAP--QNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (413)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~ 215 (413)
.+.-++..+|......+..+++.|... ++.||...+.......+|.+++..+++.+ +++..|.+.+++..+..+
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~ 169 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLI 169 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHH
Confidence 677788889999999999999999884 34477888888888888988888888776 788888887766666655
Q ss_pred hhcccc
Q 015068 216 GLFFIP 221 (413)
Q Consensus 216 ~~~~~~ 221 (413)
..+++.
T Consensus 170 ~~~~~~ 175 (433)
T PF03092_consen 170 VALFLL 175 (433)
T ss_pred HHHHhh
Confidence 444433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-08 Score=91.28 Aligned_cols=148 Identities=12% Similarity=0.090 Sum_probs=99.4
Q ss_pred hhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhch---hHHHHH-HHHHHHHHHHHHHHhcChhHHHHHHH
Q 015068 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR---KGSLMI-AAVPNIIGWLIISFSKDSSFLFMGRL 146 (413)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr---r~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~r~ 146 (413)
..+|.+.++.|.+.. .+...++..+...++ .++++||..| |+.... ..++.++.....++..+....++.-.
T Consensus 213 ~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (368)
T TIGR00903 213 IWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIG 288 (368)
T ss_pred HHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 456666677777754 566666655555555 4677777654 343332 34444555545555555555555667
Q ss_pred HHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc--chHHHHHhhHHHHHHHHhhhccccC
Q 015068 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFIPE 222 (413)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--~w~~~~~~~~~~~~~~~~~~~~~~e 222 (413)
+.|++.....+...++..|.+|++.|+++.|+.+....+|...+|.+.+.+ +-+..|.+.++..++..+...++++
T Consensus 289 l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~ 366 (368)
T TIGR00903 289 IAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIALLLPN 366 (368)
T ss_pred HHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 777777777788889999999999999999999999999998887776544 6667777666665555554444444
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-07 Score=84.16 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=93.2
Q ss_pred hHHH-HHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHh
Q 015068 87 FSIF-GSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAE 165 (413)
Q Consensus 87 ~~~~-~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 165 (413)
.|.. .++.+....+++++.+.+.|+.|.|+.++++...+....+..-+ +|-+.++++..+.|+|.+..+..--.+++|
T Consensus 51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~ 129 (461)
T KOG3098|consen 51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTS 129 (461)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhh
Confidence 3443 78888999999999999999999999999999999988887755 456678899999999999999999999999
Q ss_pred cCCCCcchhHhhHHHHHHHHHHHHHHHhhc
Q 015068 166 IAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195 (413)
Q Consensus 166 ~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 195 (413)
..+++++.+..++.-.....+.++|..+-.
T Consensus 130 ~st~~tie~Nisi~Wai~~~~li~Ggi~l~ 159 (461)
T KOG3098|consen 130 NSTRETIERNISIFWAIGQSSLIIGGIILF 159 (461)
T ss_pred cCChhhHHHHHHHHHHHHHHHHHhhhHhhe
Confidence 999999999999887777777777766543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-08 Score=88.86 Aligned_cols=147 Identities=24% Similarity=0.429 Sum_probs=121.3
Q ss_pred ccccccchhhHHHhhhhccCc--chhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcC--hh
Q 015068 64 FTCGYSSPTQAEIISDLKLTI--SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD--SS 139 (413)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~ 139 (413)
++.....+..+.+..+++.+. ...++..+.+.++..++.++.|.++||+|||+.+..+.....++.+.+++..+ ..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 555666677778888887776 48899999999999999999999999999998888888776676777777776 88
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhcCCC-CcchhHhhHHHH-HHHHHHHHHHHhhccc------chHHHHHhhHHHH
Q 015068 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQ-NMRGSLGSVNQL-SVTIGIMLAYLLGLFV------NWRVLAVLGVLPC 210 (413)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~i~~~~------~w~~~~~~~~~~~ 210 (413)
.+++.|+++|++.+...+...+++.|+.++ ++|+...+.... ...+|..+++.+++.+ +||+.|.......
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 999999999999999999999999999997 678888888877 5777888887666544 6888666555444
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.8e-08 Score=92.17 Aligned_cols=131 Identities=13% Similarity=-0.034 Sum_probs=101.0
Q ss_pred hhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhh
Q 015068 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVIS 156 (413)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 156 (413)
++.+|.++.+.++..+.+.++..++.++.|++.||+|+|+++..+.++..++.++..+.++.. -+..-.+.|++.+..+
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~ 365 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY 365 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999998888777777766666543 3456778999999999
Q ss_pred hhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c-hHHHHHhhHHHH
Q 015068 157 YTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPC 210 (413)
Q Consensus 157 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~-w~~~~~~~~~~~ 210 (413)
|...+...|..++ +.+.+.++..... +|..++|.+.+.+ | -|..|++..+..
T Consensus 366 P~~~s~a~~~~~~-~~~~as~l~~~~~-~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~ 422 (438)
T PRK10133 366 PTIFSLGIKNLGQ-DTKYGSSFIVMTI-IGGGIVTPVMGFVSDAAGNIPTAELIPALCF 422 (438)
T ss_pred HHHHHHHHcccch-hhccchhHHhHHh-ccchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999998874 4566777665433 4555555555544 4 566666544433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-08 Score=94.05 Aligned_cols=131 Identities=21% Similarity=0.246 Sum_probs=107.5
Q ss_pred ccccchhhHHHhhh-hccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhc--ChhHHH
Q 015068 66 CGYSSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLF 142 (413)
Q Consensus 66 ~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~ 142 (413)
........+.+.++ +|.+ ...+....+..++..++.+++++++||+|+|+.+..+..+.+++.++..+.+ |.+.++
T Consensus 241 ~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (428)
T PF13347_consen 241 FALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVL 319 (428)
T ss_pred hhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33344444445444 4544 6778888899999999999999999999999999999999999999988886 999999
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhcCCC-------CcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 143 MGRLLEGFGVGVISYTVPVYIAEIAPQ-------NMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
+.-++.|++.+...+...++++|..+. ++.|...+.++...-+|..+++.+.+.+
T Consensus 320 i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 320 ILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred HHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999998873 3347788888888888888777766544
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.9e-09 Score=91.82 Aligned_cols=138 Identities=12% Similarity=0.085 Sum_probs=106.8
Q ss_pred HHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhc-------ChhH----HHH
Q 015068 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-------DSSF----LFM 143 (413)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~~----l~~ 143 (413)
.++++|+.++.+.|...+.+.+...+..+.+|+++||+|.+|++.......+++..+..+.+ +... ++.
T Consensus 244 ~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 323 (417)
T COG2223 244 YLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLA 323 (417)
T ss_pred HHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999888888887764 3333 444
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhHHHHHHHHhhh
Q 015068 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGL 217 (413)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~~ 217 (413)
..+..|+|.|.. ..++...++ ++-|...|+.....++|...-|..-+.. +++..|++.....+++.+..
T Consensus 324 l~~~~G~GnGsv----fk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~ 397 (417)
T COG2223 324 LFVFAGLGNGSV----FKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLT 397 (417)
T ss_pred HHHHhccCcchh----eeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 556666666554 456666666 3678889999999898876666554443 58888888777666665543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-07 Score=89.83 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=89.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH-----hcChhHHHHHHHHHhhhhhhhhh
Q 015068 83 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-----SKDSSFLFMGRLLEGFGVGVISY 157 (413)
Q Consensus 83 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~ 157 (413)
+.+..+++.+...++..++.+++++++||+|+|+.+..+..+..++.+...+ ..+.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777889999999999999999999999888776766655432 34566777788889999999999
Q ss_pred hHHHHHHhcCC-------CCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 158 TVPVYIAEIAP-------QNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 158 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
...++++|..+ +++.|...+......-+|..+++.+.+.+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 33345678888887778887777766554
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.4e-07 Score=86.10 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=96.1
Q ss_pred hhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHH---HH--hcChhHHHHHHH
Q 015068 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SF--SKDSSFLFMGRL 146 (413)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~--~~~~~~l~~~r~ 146 (413)
..|.+.+++|.+..+.++......++..++.++.+++.||+|+|+.+.......+++.+.. .. .++...+++.-.
T Consensus 225 ~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (401)
T PRK11043 225 GSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFC 304 (401)
T ss_pred HhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3455677789999999998888889999999999999999999987766555544443332 22 345555666677
Q ss_pred HHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
+.|++.+...+...+...|..| ++|+++.++.+.....+...++.+.+.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l 354 (401)
T PRK11043 305 VMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSAL 354 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8889999989888888777776 6799999999988777777777776665
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-07 Score=88.50 Aligned_cols=112 Identities=14% Similarity=0.183 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH--hcChhHHHHHHHHHhhhhhhhhhhHHHHH
Q 015068 86 EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF--SKDSSFLFMGRLLEGFGVGVISYTVPVYI 163 (413)
Q Consensus 86 ~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 163 (413)
..+.+.....+...++.+++++++||+|+|+.+..+.++..+......+ .++.+.+++..++.|++.+...+...+++
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677888889999999999999999999887766654443333 34677778888999999999999999999
Q ss_pred HhcCCC-------CcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 164 AEIAPQ-------NMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 164 ~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
+|..+. +..|...+.......+|..+|+.+++.+
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998752 2335667888777788888887777654
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=69.63 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=74.4
Q ss_pred hhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHH
Q 015068 62 FGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFL 141 (413)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l 141 (413)
.|+.+..++|.+|.+++|.++|.++.|++.+..++||.+|.+...++.++..+++.+..+.+...+..+.+++.++++.+
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999887654
|
Note that many members are hypothetical proteins. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.9e-07 Score=85.33 Aligned_cols=124 Identities=20% Similarity=0.103 Sum_probs=94.9
Q ss_pred HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHH-HHHHHHHH--hcChhHHHHHHHHHhhhh
Q 015068 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI-IGWLIISF--SKDSSFLFMGRLLEGFGV 152 (413)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~-~~~~~~~~--~~~~~~l~~~r~l~G~~~ 152 (413)
+.+.+|.++.+.++......++..+++++.+++.||+|++........+.. +....... ..+.+.+....++.|++.
T Consensus 234 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 313 (394)
T PRK11652 234 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGA 313 (394)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 445589999999999999999999999999999999984443332222222 22222222 235667777889999999
Q ss_pred hhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhcccchH
Q 015068 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWR 200 (413)
Q Consensus 153 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~w~ 200 (413)
+...+...++..|..| ++++...++.+....+|..+++.+++.+..+
T Consensus 314 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 314 GMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999887 6789999999999999999999998887433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.7e-08 Score=88.36 Aligned_cols=126 Identities=10% Similarity=-0.116 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH-Hhc-----ChhHHHHHHHHHhhhhhhhhhhHHHHHH
Q 015068 91 GSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS-FSK-----DSSFLFMGRLLEGFGVGVISYTVPVYIA 164 (413)
Q Consensus 91 ~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-~~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 164 (413)
..+..+...+..+++|+++||+|+|+++.++.+...++..... ..+ +++.+.+.-+...++.|........++.
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip 371 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA 371 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence 4455677888999999999999999999998877777664322 222 4555555554444555555555666676
Q ss_pred hcCCC---------------------CcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhHHHHHHHHhh
Q 015068 165 EIAPQ---------------------NMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPG 216 (413)
Q Consensus 165 ~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~ 216 (413)
+.+|+ ++-|...|+......+|.++-|.+-+.. ++...|+...+..+++++.
T Consensus 372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 449 (462)
T PRK15034 372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLL 449 (462)
T ss_pred HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 76663 1446678888888888777777553333 5777777776666555543
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=89.41 Aligned_cols=146 Identities=14% Similarity=0.141 Sum_probs=117.1
Q ss_pred hhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH----------hcChhHHHHHHH
Q 015068 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF----------SKDSSFLFMGRL 146 (413)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~ 146 (413)
.+.+|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+.... .++.+.+...-+
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~ 359 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI 359 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence 3578999999999999999999999999999999999999999999999988765431 134445556688
Q ss_pred HHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c-----hH--HHHH-hhHHHHHHHH
Q 015068 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-----WR--VLAV-LGVLPCTLLI 214 (413)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~-----w~--~~~~-~~~~~~~~~~ 214 (413)
+.+++.+..+.....++.+..|++++++..++.+...++|..+++.+++.+ | ++ +... ++.+..++.+
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l 439 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPL 439 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887766 3 33 2222 2334444444
Q ss_pred hhhccccC
Q 015068 215 PGLFFIPE 222 (413)
Q Consensus 215 ~~~~~~~e 222 (413)
...+++|+
T Consensus 440 ~~~~llP~ 447 (468)
T TIGR00788 440 PLLHLLPR 447 (468)
T ss_pred HHHHhCCC
Confidence 45557785
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.8e-06 Score=75.31 Aligned_cols=126 Identities=8% Similarity=0.048 Sum_probs=92.1
Q ss_pred hhHHHhhhhccC-----cchhHHHHHHHHHHHHHH-HHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh--c--C----
Q 015068 72 TQAEIISDLKLT-----ISEFSIFGSLANVGAMVG-AIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--K--D---- 137 (413)
Q Consensus 72 ~~~~i~~~~~~s-----~~~~~~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~--~---- 137 (413)
++-.+++.+.++ ...+.++-+...+..++. .++.+++++|++|++++-.....+.....++++. + +
T Consensus 25 iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p 104 (472)
T TIGR00769 25 ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHP 104 (472)
T ss_pred HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCC
Confidence 344467777663 356888888887777666 8999999999999999988777777776666654 1 1
Q ss_pred -----------------------hhHHHHHHHHHhhhhhhhhh-hHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHh
Q 015068 138 -----------------------SSFLFMGRLLEGFGVGVISY-TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193 (413)
Q Consensus 138 -----------------------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i 193 (413)
.|...+..+...+-...... .-.++.+|.++.++-.|..++...+.++|..+++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~ 184 (472)
T TIGR00769 105 TALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT 184 (472)
T ss_pred cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222333444443444444 667899999999999999999999999999999887
Q ss_pred hccc
Q 015068 194 GLFV 197 (413)
Q Consensus 194 ~~~~ 197 (413)
..++
T Consensus 185 ~~~~ 188 (472)
T TIGR00769 185 IKYF 188 (472)
T ss_pred HHHH
Confidence 7654
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.9e-07 Score=87.72 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHHHHHHhH----HHHHhhhchhHHHHHHHHHHHHHHHHHHHhcC---------hhHHHHHHHHHhhhhh
Q 015068 87 FSIFGSLANVGAMVGAIAS----GQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD---------SSFLFMGRLLEGFGVG 153 (413)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~----g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~l~~~r~l~G~~~g 153 (413)
.++..++..+...+..++. +++.+|++.++.+.++.++.+++.+..+.+.+ .++++..+++.|+|..
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 5666777776666666666 55566666668889999999999888777654 4578889999999999
Q ss_pred hhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc--------------chHHHHHhhHHHHHHHH
Q 015068 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------NWRVLAVLGVLPCTLLI 214 (413)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--------------~w~~~~~~~~~~~~~~~ 214 (413)
...|...+++.+..|++.||+.+|.+.....+|..++..+.... +.++.|...++..++..
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a 472 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIA 472 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888877776665311 25667766655544433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.8e-07 Score=77.82 Aligned_cols=167 Identities=16% Similarity=0.110 Sum_probs=127.8
Q ss_pred hhhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhh-chhHHHHHHHHH
Q 015068 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVP 124 (413)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~ 124 (413)
+..|.+.....+.++..+ ....-+|.+..|-|+|..+.|++.+...+.....++....+.+|. .+|+..+...++
T Consensus 208 ~~aW~vtLfmGlqS~~~Y----~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~ 283 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYY----IVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLL 283 (395)
T ss_pred chhHHHHHHHHhhHHHHH----HHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 445666555555554433 233467889999999999999999999999999999999999975 567777788888
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCC-CcchhHhhHHHHHHHHHHHHHHHhhccc-----c
Q 015068 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQ-NMRGSLGSVNQLSVTIGIMLAYLLGLFV-----N 198 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~ 198 (413)
+.++...+.+.+.-..++- -++.|+|.|..++.....+.+..+. ++-++..++.+....+=..+||.+.+.+ +
T Consensus 284 ~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gs 362 (395)
T COG2807 284 MLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGS 362 (395)
T ss_pred HHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCC
Confidence 8888888888876443333 4999999999999999999998754 4445666666666666677889888888 8
Q ss_pred hHHHHHhhHHHHHHHHhhh
Q 015068 199 WRVLAVLGVLPCTLLIPGL 217 (413)
Q Consensus 199 w~~~~~~~~~~~~~~~~~~ 217 (413)
|+...+..+...+...+.-
T Consensus 363 w~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 363 WSAPLVLLALATLLMLIFG 381 (395)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9988877666555554433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.8e-07 Score=85.64 Aligned_cols=130 Identities=21% Similarity=0.149 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhch-----hHHH--HHHHHHHHHHHHHHHH---------hcChhHHHHHHHHHhh
Q 015068 87 FSIFGSLANVGAMVGAIASGQIAEYIGR-----KGSL--MIAAVPNIIGWLIISF---------SKDSSFLFMGRLLEGF 150 (413)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-----r~~l--~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~ 150 (413)
.+++.++..+...+.+++..++-.|.+| +... .+|.++.+++....++ ..|+++++...++.|+
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 6788888888888888886654444443 3333 7788888888877765 4589999999999999
Q ss_pred hhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhh
Q 015068 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (413)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~ 216 (413)
|.....|...+++.+..|++.||++++++.....+|..+++.+.... +|...|...++..++..+.
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVV 463 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887654 6777776655554444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-06 Score=76.08 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=114.6
Q ss_pred hhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHh-hhchhHHHHHHHHHHHHHHHHHH---HhcChhHHHHHHHHHhhhh
Q 015068 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE-YIGRKGSLMIAAVPNIIGWLIIS---FSKDSSFLFMGRLLEGFGV 152 (413)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~ 152 (413)
.+-||+|..|...+++....|..++....|++.. |.++|+.-..++.+..++..+.. ...+.+.+...-++.|++.
T Consensus 236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~ 315 (403)
T PF03209_consen 236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN 315 (403)
T ss_pred hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 4558999999999999999999999999999887 67888887788777776666544 4467889999999999999
Q ss_pred hhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc--------------chHHHHHhhHHHHHHHHh
Q 015068 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------NWRVLAVLGVLPCTLLIP 215 (413)
Q Consensus 153 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--------------~w~~~~~~~~~~~~~~~~ 215 (413)
|.......+...|...+++.|..+|.+.....++..++..+++.+ +|-.+|.+.++..+..+.
T Consensus 316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888888887777654 466667666655444443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=88.53 Aligned_cols=168 Identities=14% Similarity=0.113 Sum_probs=112.1
Q ss_pred HHHHhHHHHhhhccccccchhhHHHhh-hhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhch---------hHHHHHH
Q 015068 52 VLVVALGPIQFGFTCGYSSPTQAEIIS-DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR---------KGSLMIA 121 (413)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr---------r~~l~~~ 121 (413)
+..+.++.+........+....|.+.+ -+|.+..+.|+..++..+...+..+++|.++||.-+ |..-.++
T Consensus 260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~ 339 (466)
T KOG2532|consen 260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIA 339 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHH
Confidence 444455555556666666667776555 589999999999999999999999999999998754 2223345
Q ss_pred HHHHHHHHHHHHHhcChhH-HHHHHHHHhhhhhhhhhhH-HHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc--
Q 015068 122 AVPNIIGWLIISFSKDSSF-LFMGRLLEGFGVGVISYTV-PVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-- 197 (413)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-- 197 (413)
....+++.+..++.++-.. ..+.-+..+.+..+....+ ..-..|. .+++-+..+++.+....+..+++|.+.+.+
T Consensus 340 ~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 340 FGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred HHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 6666666666666653111 1111111112222222222 2222222 457789999999999999999999998877
Q ss_pred -----chHHHHHhhHHHHHHHHhhhccc
Q 015068 198 -----NWRVLAVLGVLPCTLLIPGLFFI 220 (413)
Q Consensus 198 -----~w~~~~~~~~~~~~~~~~~~~~~ 220 (413)
+||++|++.++..++..+...++
T Consensus 419 ~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 419 DNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred CCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 69999999888777766544443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=86.81 Aligned_cols=111 Identities=12% Similarity=0.145 Sum_probs=83.5
Q ss_pred HHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh--c--ChhHHHHHHHHHhh
Q 015068 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--K--DSSFLFMGRLLEGF 150 (413)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~--~~~~l~~~r~l~G~ 150 (413)
.+++.+|.++.+.++..++..++..++.++.|+++||+|||+.+..+.....++..+..+. + +...+.+.-.+.++
T Consensus 251 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (366)
T TIGR00886 251 FFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFF 330 (366)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999988887777666666555442 2 45544455555555
Q ss_pred hhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHH
Q 015068 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186 (413)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 186 (413)
+.|........++.+..| +++|...|+.+....+|
T Consensus 331 ~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 331 FSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred Hhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 555555666677788776 68999999888766554
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.7e-06 Score=79.38 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=73.8
Q ss_pred cchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcC--hhHHHHHHHHHhhhhhhhhhhHHH
Q 015068 84 ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD--SSFLFMGRLLEGFGVGVISYTVPV 161 (413)
Q Consensus 84 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~ 161 (413)
+...+.+.+.+.++..++.+++++++||+|+|+.+..+..+..+..++..+.++ ...+++.-++.|++.+...+...+
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777888899999999999999999999887655544443444333332 223445556778877777777677
Q ss_pred HHHhcCC-------CCcchhHhhHHHHHHHHHHHHHHHhhcc
Q 015068 162 YIAEIAP-------QNMRGSLGSVNQLSVTIGIMLAYLLGLF 196 (413)
Q Consensus 162 ~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 196 (413)
++.|..+ +++.|...+......-+|..+++.+++.
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7887765 2223444555556666666666555543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.6e-08 Score=87.63 Aligned_cols=146 Identities=19% Similarity=0.225 Sum_probs=122.7
Q ss_pred hhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhh
Q 015068 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (413)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (413)
..+-.-.+|++-.+...|........|-.+.-++.+++.+|+|+-+++..++.+..+=.+..++.+|.|..+...+++|+
T Consensus 392 tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgi 471 (618)
T KOG3762|consen 392 TFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGI 471 (618)
T ss_pred HHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHH
Confidence 33334567888788888888888888889999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHhcCCCCcchhHhhHHHH-HHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhh
Q 015068 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQL-SVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (413)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~ 216 (413)
..+..+.+..+|++...||+.|..+.++.+. ..++|-.+|.++|+.+ +-|..|.+.++.+++.++.
T Consensus 472 t~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 472 THALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred HHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888654 4566666777777665 7777787766655555443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-06 Score=66.74 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=93.6
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHH
Q 015068 82 LTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPV 161 (413)
Q Consensus 82 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 161 (413)
+++..--.-.++.+....+++++.+.+.+++|.|+.++++.+.+.+-.... +-++.+.++.+-++.|++.+..++....
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 334344445677788889999999999999999999999999988655544 5677889999999999999999999999
Q ss_pred HHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhh
Q 015068 162 YIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (413)
Q Consensus 162 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 194 (413)
++.+..++++|++..+++-.....+.++|.++.
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988777777777776554
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.5e-06 Score=75.17 Aligned_cols=116 Identities=16% Similarity=0.234 Sum_probs=91.9
Q ss_pred hccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhc--ChhHHHHHHHHHhhhhhhhhh
Q 015068 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGVISY 157 (413)
Q Consensus 80 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~ 157 (413)
+|-++.+..+.......+..++.+++.++.+|+|+|+++..+.++..++.++..+.+ +...+++..++.++|.+...+
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 455556667777778888888899999999999999999999999999999988876 678888889999999999999
Q ss_pred hHHHHHHhcCCC-------CcchhHhhHHHHHHHHHHHHHHHhhc
Q 015068 158 TVPVYIAEIAPQ-------NMRGSLGSVNQLSVTIGIMLAYLLGL 195 (413)
Q Consensus 158 ~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~i~~ 195 (413)
...++++|..+- ++-|...+......=+|..++..+.+
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g 391 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG 391 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987752 22355566666555556666554443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.2e-06 Score=78.56 Aligned_cols=124 Identities=14% Similarity=-0.014 Sum_probs=92.3
Q ss_pred hhhHHHhhhh--ccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHH
Q 015068 71 PTQAEIISDL--KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (413)
Q Consensus 71 ~~~~~i~~~~--~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 148 (413)
..++...++. +.+....+...+.+..+..+|.++.+++.||+++|+++.+..++..+..++..+.++... ..+-++.
T Consensus 253 s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~ 331 (410)
T TIGR00885 253 TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLC 331 (410)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence 3344444443 444445565667777888999999999999999999999999998888888888777544 5677888
Q ss_pred hhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
|++.+..+|...+...+..+++.+....++... .+|..+.|.+.+.+
T Consensus 332 glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~ 378 (410)
T TIGR00885 332 SAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFI 378 (410)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHH
Confidence 899999999999999999986654333333332 37878887776655
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-07 Score=82.45 Aligned_cols=153 Identities=13% Similarity=0.116 Sum_probs=116.6
Q ss_pred ccccccchhhHH-HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhc--hhHHHHHHHHHHHHHHHHHHHhcChhH
Q 015068 64 FTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG--RKGSLMIAAVPNIIGWLIISFSKDSSF 140 (413)
Q Consensus 64 ~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~ 140 (413)
...+..-|.++. +.+.+..+.-+.|...--..+.+.++..+.|.++||++ |-.....+++..+..+....+++++.+
T Consensus 284 ~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~ 363 (464)
T KOG3764|consen 284 SSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQ 363 (464)
T ss_pred chHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHH
Confidence 445555677776 56677744448888888888999999999999999999 433444556666666667778999999
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhcCCCCc------chhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHH
Q 015068 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNM------RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (413)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~ 210 (413)
+.+-++..|++.+...........+..+.++ -|...++...++++|..+||.+++.+ |++|.-.+.++..
T Consensus 364 L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n 443 (464)
T KOG3764|consen 364 LWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILN 443 (464)
T ss_pred HhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHH
Confidence 9999999998888877776666666665433 36788889999999999999999988 7888777666665
Q ss_pred HHHHhh
Q 015068 211 TLLIPG 216 (413)
Q Consensus 211 ~~~~~~ 216 (413)
++-...
T Consensus 444 ~iyapv 449 (464)
T KOG3764|consen 444 LIYAPV 449 (464)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.5e-06 Score=79.24 Aligned_cols=109 Identities=20% Similarity=0.258 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhchhHH-------HHHHHHHHHHHHHHHH-----Hh-----cChhHHHHHHHHHh
Q 015068 87 FSIFGSLANVGAMVGAIASGQIAEYIGRKGS-------LMIAAVPNIIGWLIIS-----FS-----KDSSFLFMGRLLEG 149 (413)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-------l~~~~~~~~~~~~~~~-----~~-----~~~~~l~~~r~l~G 149 (413)
.+++.++..+...+.+++.+++.||+|+|+. +.+|.++.+++.+..+ ++ .+++.+...-++.|
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence 3566667777888899999999999999973 6677777776664321 22 35677788899999
Q ss_pred hhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhc
Q 015068 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195 (413)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 195 (413)
+|.+...+...+++.+..|++.++.+++++.....+|..+|..++.
T Consensus 391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~ 436 (489)
T PRK10207 391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVAT 436 (489)
T ss_pred HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888774
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00029 Score=64.91 Aligned_cols=298 Identities=15% Similarity=0.040 Sum_probs=143.7
Q ss_pred cccccchhhHHHhhhhcc-CcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH------h--
Q 015068 65 TCGYSSPTQAEIISDLKL-TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF------S-- 135 (413)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~-s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~-- 135 (413)
+.-+.....+.+..+..- |---.+...-.-.+...+.++..|.+.||..|.++...+.+..-++..+.+. .
T Consensus 17 ~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~ 96 (432)
T PF06963_consen 17 GDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYP 96 (432)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333444444544444421 3222333344455667778888999999999999877765554444333321 1
Q ss_pred c----ChhHHHHH---HHHHhhhhhh-hhhhHHHHHHhcCC------CCcchhHhhHHHHHHHHHHHHHHHhhccc----
Q 015068 136 K----DSSFLFMG---RLLEGFGVGV-ISYTVPVYIAEIAP------QNMRGSLGSVNQLSVTIGIMLAYLLGLFV---- 197 (413)
Q Consensus 136 ~----~~~~l~~~---r~l~G~~~g~-~~~~~~~~i~~~~~------~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---- 197 (413)
+ +-+....+ -.+.|.-.-. ......+.=.||.. ++.+.+..+...-.--+.-+++|++.+.+
T Consensus 97 ~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~ 176 (432)
T PF06963_consen 97 SSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFA 176 (432)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1 11222111 1122211111 11111222233422 23334444444444445667777777665
Q ss_pred chHHHHHhhHHHHHHHHhh-hccc----cCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhH
Q 015068 198 NWRVLAVLGVLPCTLLIPG-LFFI----PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRF 272 (413)
Q Consensus 198 ~w~~~~~~~~~~~~~~~~~-~~~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (413)
+.+....+.+...++.... .+++ ...|+ +..+++.++.....+.. +...........+...+.-.+....|
T Consensus 177 s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~w 252 (432)
T PF06963_consen 177 SPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEE---SSSESSSDPSILKRLWNPLRTIIRGW 252 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcccccccccc---ccccccchhhHHHHHHHHHHHHhccH
Confidence 5665555555555554432 1111 22332 11111111110000000 00000000011111111122223456
Q ss_pred HHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHH
Q 015068 273 AELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLL 350 (413)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 350 (413)
+..++.+.+.+.+ ...+.++..++. ......++...|+++.. ..-....+.++.+++...++.+|+|..+.-.
T Consensus 253 ~~Y~~q~vflas~-alalLY~TVLsf----~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~ 327 (432)
T PF06963_consen 253 RTYFRQPVFLASF-ALALLYFTVLSF----GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGL 327 (432)
T ss_pred HHHHhCHHHHHHH-HHHHHHHHHhcC----cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH
Confidence 6666665444333 334444444332 33344556667998776 4556667888999999999999999998888
Q ss_pred HHhHHHHHHHHHHHHHHHhcc
Q 015068 351 ISSSGMAASFFLVSVAFFLEG 371 (413)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~ 371 (413)
.+......++.+....++.+.
T Consensus 328 ~~l~~q~~~L~~~v~~~~~~~ 348 (432)
T PF06963_consen 328 WSLWWQWVCLALCVVSFWAPG 348 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 887777666666555555443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.3e-07 Score=83.04 Aligned_cols=173 Identities=17% Similarity=0.082 Sum_probs=121.3
Q ss_pred HHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHH----HHHHH-----HHHHHHHHHhHHHHHhhhchhHHHHH
Q 015068 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSI----FGSLA-----NVGAMVGAIASGQIAEYIGRKGSLMI 120 (413)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~----~~s~~-----~~~~~~~~~~~g~l~dr~Grr~~l~~ 120 (413)
..++..+...|+..+.....+.....+.+..++.+++... -.+.. ..++..|-.+...++|+.|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 3345556666666666666666677788877776554333 11111 12222355566778999999999999
Q ss_pred HHHHHHHHHHHHHHhcC----hhHHHH----HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHH
Q 015068 121 AAVPNIIGWLIISFSKD----SSFLFM----GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL 192 (413)
Q Consensus 121 ~~~~~~~~~~~~~~~~~----~~~l~~----~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 192 (413)
+.+++.+..+..+...| ...+.+ ..++.-+| .......+-+|.+|.+-|+...|+..+..-+|+++|..
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~ 460 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF 460 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence 99999999999988766 122222 23333333 23344566789999999999999999998889888876
Q ss_pred hhccc---------chHHHHHhhHHHHHHHHhhhccccCchH
Q 015068 193 LGLFV---------NWRVLAVLGVLPCTLLIPGLFFIPESPR 225 (413)
Q Consensus 193 i~~~~---------~w~~~~~~~~~~~~~~~~~~~~~~e~~~ 225 (413)
.-..+ +.|+.+++.+...++..+..+++||+.+
T Consensus 461 ~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 461 GFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 55433 7889999998888888888888998854
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-05 Score=75.28 Aligned_cols=137 Identities=12% Similarity=-0.013 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhch-hHHHHHHHHHHHHHHHHHHHhcC---------------------hhHHHHHH
Q 015068 88 SIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLIISFSKD---------------------SSFLFMGR 145 (413)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~r 145 (413)
.|....+.+...+.+++..++.+|+|+ |++..++.++.+++.....+.++ .+..++.-
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF 387 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence 344555556666777888899999994 77778898888888877765442 26677788
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCC--CcchhHhhHHHHHHHHHHHHHHHhhccc------chHHHHHhhHHHHHHHHhh-
Q 015068 146 LLEGFGVGVISYTVPVYIAEIAPQ--NMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPG- 216 (413)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~~------~w~~~~~~~~~~~~~~~~~- 216 (413)
.+.|+..+.....-++++++..++ ++.|..+|+.+....+.+++..+..+.+ +-.+.+.++++..++..+.
T Consensus 388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~ 467 (477)
T TIGR01301 388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA 467 (477)
T ss_pred HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence 999999999999999999999985 4559999999999999998887766553 3456777888877777664
Q ss_pred hccccCch
Q 015068 217 LFFIPESP 224 (413)
Q Consensus 217 ~~~~~e~~ 224 (413)
.+.+|+.+
T Consensus 468 ~~~~~~~~ 475 (477)
T TIGR01301 468 LILLPRPR 475 (477)
T ss_pred HHhCCCCC
Confidence 45577653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.4e-06 Score=69.55 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=75.3
Q ss_pred chhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHh
Q 015068 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (413)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (413)
+|..-.+.+.++....++|.+.-...-...+...+.|-++||-|||+.-+.-++-+.++++ .-.++++-.++++|.+-|
T Consensus 57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGG 135 (454)
T KOG4332|consen 57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGG 135 (454)
T ss_pred CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhh
Confidence 3555557788899999998888777777788888999999999999976655555444432 346789999999999999
Q ss_pred hhhhhhhhhHHHHH-HhcC
Q 015068 150 FGVGVISYTVPVYI-AEIA 167 (413)
Q Consensus 150 ~~~g~~~~~~~~~i-~~~~ 167 (413)
+..+..+.+-.++. .|.-
T Consensus 136 iaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 136 IATSLLFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 99999888877654 4544
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.7e-06 Score=79.96 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=116.3
Q ss_pred chhhHHHhh-hhccCc---chhHHHHHHHHHHHHHHHHhHHHHHhhhch-hHHHHHHHHHHHHHHHHHHH--hcChhHHH
Q 015068 70 SPTQAEIIS-DLKLTI---SEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLIISF--SKDSSFLF 142 (413)
Q Consensus 70 ~~~~~~i~~-~~~~s~---~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~--~~~~~~l~ 142 (413)
....|+... -++-+. .+.++....+.++..+++.+.|.+..+++| |+.++++.+++.++.-+++. .+|....+
T Consensus 330 ~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i 409 (599)
T PF06609_consen 330 NILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAI 409 (599)
T ss_pred HHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHH
Confidence 344454433 344333 357888888999999999999999998886 55556776666654444433 34666667
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-------------------------
Q 015068 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------------------------- 197 (413)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------------------------- 197 (413)
..-++.|++.|.........+.-..|+++-+.+.++....-.+|..+|..+...+
T Consensus 410 ~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~ 489 (599)
T PF06609_consen 410 AFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPES 489 (599)
T ss_pred HHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChh
Confidence 7889999999998888888777788989999999998888888877775554211
Q ss_pred -----------------------------------------chHHHHHhhHHHHHHHHhhhccccCchHHH
Q 015068 198 -----------------------------------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWL 227 (413)
Q Consensus 198 -----------------------------------------~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 227 (413)
++|++|+....++.+.++..+++++..+++
T Consensus 490 sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~~m 560 (599)
T PF06609_consen 490 SLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDKYM 560 (599)
T ss_pred hHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHhh
Confidence 278999999999999999888888765543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.1e-09 Score=99.53 Aligned_cols=151 Identities=19% Similarity=0.196 Sum_probs=95.3
Q ss_pred hhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH--H--hcCh-----hHHH
Q 015068 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS--F--SKDS-----SFLF 142 (413)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~-----~~l~ 142 (413)
..+.+.++.+.++. -.......+...++.++...+.||+|||+.++.+..+.+++.+..+ . .++- ...+
T Consensus 275 ~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 352 (451)
T PF00083_consen 275 YSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSI 352 (451)
T ss_pred cccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34557777777766 2222333345556677777999999999999999888888877764 1 1111 1112
Q ss_pred HHHHHHhhhhh-hhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c-hHHHHHhhHHHHHHHHhh
Q 015068 143 MGRLLEGFGVG-VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTLLIPG 216 (413)
Q Consensus 143 ~~r~l~G~~~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~-w~~~~~~~~~~~~~~~~~ 216 (413)
+.-.+...+.+ ...+....+..|.+|.+.|+++.++......++..+++.+...+ + +.......++..+..++.
T Consensus 353 ~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~ 432 (451)
T PF00083_consen 353 VFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFV 432 (451)
T ss_pred eeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhhe
Confidence 22222211112 33456668889999999999999999888888887777766554 2 323333333334444456
Q ss_pred hccccCch
Q 015068 217 LFFIPESP 224 (413)
Q Consensus 217 ~~~~~e~~ 224 (413)
.+++||+.
T Consensus 433 ~~~lpET~ 440 (451)
T PF00083_consen 433 YFFLPETK 440 (451)
T ss_pred eEEEeeCC
Confidence 77789984
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.7e-05 Score=71.65 Aligned_cols=135 Identities=13% Similarity=0.160 Sum_probs=85.1
Q ss_pred hhHH-HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH-----HhcChhHHHHHH
Q 015068 72 TQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS-----FSKDSSFLFMGR 145 (413)
Q Consensus 72 ~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~r 145 (413)
..|. +++.+|.+..+.++.......+..+++.+.+.+.++.++++.......+..++..+.. ..+++...+++.
T Consensus 240 ~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~ 319 (413)
T PRK15403 240 VSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGT 319 (413)
T ss_pred hChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 3444 4555799999999998888888888888888877555444443322222233332222 123444456788
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhH
Q 015068 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGV 207 (413)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~ 207 (413)
++.|+|.+...+......- .-.+..+|++.++.+.....+..+++..++++ +=++.|....
T Consensus 320 ~l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 383 (413)
T PRK15403 320 SLYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLA 383 (413)
T ss_pred HHHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 8899998888877774332 22233478888888887777777777777655 3344444433
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-06 Score=57.66 Aligned_cols=61 Identities=15% Similarity=0.251 Sum_probs=53.5
Q ss_pred ccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHH
Q 015068 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (413)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 124 (413)
...+...|.+|...++.|+|+.++|.+.++..+...++++++|.++||+|+++..+....+
T Consensus 14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3456667888888899999999999999999999999999999999999998887766544
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4e-05 Score=66.37 Aligned_cols=257 Identities=13% Similarity=0.165 Sum_probs=152.8
Q ss_pred hhhccCcchhH-HHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhh
Q 015068 78 SDLKLTISEFS-IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVIS 156 (413)
Q Consensus 78 ~~~~~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 156 (413)
.+.|++..+.. -+.-...-.+.+.-.+.=.+.|..-.|++++.-.+.....-.+.-+.++.+.+=+.-++.|...+ ..
T Consensus 34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aE 112 (433)
T KOG3810|consen 34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AE 112 (433)
T ss_pred CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HH
Confidence 45567766542 23333444556666667778999999999988877777777778889999999999999999764 45
Q ss_pred hhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc------chHHHHHhhHHHHHHHHhhhccccCchHHHHHc
Q 015068 157 YTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKM 230 (413)
Q Consensus 157 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 230 (413)
.+-++++.+..+++++-++.+...++.-.|...|..++..+ +++..=.+......+..+...++|..+|-+..+
T Consensus 113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~ 192 (433)
T KOG3810|consen 113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFH 192 (433)
T ss_pred HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhh
Confidence 67889999999999999999999998888888888888766 344444455555555566677777766433322
Q ss_pred CChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHH
Q 015068 231 GMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIF 310 (413)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (413)
.+.++.. ..+....+ . ..+..+..+.....-...+.+..++ +.++.-.+.+.....+++-+.+|...+.
T Consensus 193 ~~~~~~~--v~~~e~~~----~-~~~~~~~l~~~~~~l~~~l~~~y~n----p~ll~WSlWwAl~scg~~QV~nY~Q~LW 261 (433)
T KOG3810|consen 193 RLEDKIS--VGDLEEMN----P-QASYMSYLRGAFVLLWRDLQECYSN----PRLLKWSLWWALASCGYYQVTNYTQILW 261 (433)
T ss_pred cccccce--eccchhcC----c-cchhhHHHHHHHHHHHHHHHHHhcC----chhhhhHHHHHHhhchhHHHHHHHHHHH
Confidence 2222110 00000000 0 0000000000000111122223333 3333444455555556677777777777
Q ss_pred hhcCCCCchh----HHHHHHHHHHHHHHHHHHHHhhcCCc
Q 015068 311 ANAGISSSNV----ATFGLGVVQVVATGVNTWLMDKAGRR 346 (413)
Q Consensus 311 ~~~g~~~~~~----~~~~~~~~~~~~~~~~g~l~dr~g~~ 346 (413)
++..-.+... .=.+..+.++++.+..|++.-++.|.
T Consensus 262 ~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~ 301 (433)
T KOG3810|consen 262 KEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRW 301 (433)
T ss_pred HhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchh
Confidence 7664222222 22333455667777888876555554
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00011 Score=70.48 Aligned_cols=160 Identities=16% Similarity=0.047 Sum_probs=99.5
Q ss_pred ccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcC------
Q 015068 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD------ 137 (413)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~------ 137 (413)
..........+.+-+..|.+... .+...+......++..+...+.||+|||+.++.+...+.++.++.+....
T Consensus 309 tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~ 387 (513)
T KOG0254|consen 309 TGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYP 387 (513)
T ss_pred hCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCC
Confidence 33444555666778877777554 56666677777788888899999999999999999999999988875421
Q ss_pred -------hhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhh
Q 015068 138 -------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLG 206 (413)
Q Consensus 138 -------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~ 206 (413)
...+...-+.......+..++...+.+|.+|.+.|+++.++......+...+-....... ++...|...
T Consensus 388 ~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f 467 (513)
T KOG0254|consen 388 NSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYF 467 (513)
T ss_pred CcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 111111222222223334455557889999999999998887665554433322221111 223445443
Q ss_pred HHH-HHHHH-hhhccccCch
Q 015068 207 VLP-CTLLI-PGLFFIPESP 224 (413)
Q Consensus 207 ~~~-~~~~~-~~~~~~~e~~ 224 (413)
... .+... ...+++||+.
T Consensus 468 ~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 468 GGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred HHHHHHHHHHHheEEcccCC
Confidence 333 33333 4566689873
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.3e-05 Score=66.87 Aligned_cols=128 Identities=16% Similarity=0.059 Sum_probs=101.2
Q ss_pred cccchhhHHHhhh-hccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHH
Q 015068 67 GYSSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (413)
Q Consensus 67 ~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 145 (413)
......++.+.+| .|.+..+.+...+.+..+..+|.+++.++..|+...|.+.+..++..+-++..+++++...+ .+-
T Consensus 253 va~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~-~~l 331 (422)
T COG0738 253 VAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL-YAL 331 (422)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHH
Confidence 3344455556555 88999999999999999999999999999999999999999998888888899999995544 466
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
++.|+..++.+|...+...+..+ ++-... +..-....+|..+-|.+.+++
T Consensus 332 ~~ig~F~simfPTIfslal~~l~-~~ts~~-s~~l~maivGGAiiP~l~G~i 381 (422)
T COG0738 332 FLIGLFNSIMFPTIFSLALKNLG-EHTSVG-SGLLVMAIVGGAIIPPLQGVI 381 (422)
T ss_pred HHHHHHhHHHHHHHHHHHHhccC-cccccc-ceeeeeheecchHHHHHHHHH
Confidence 78899999999999999999998 333333 333344556666777776666
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.3e-05 Score=73.50 Aligned_cols=146 Identities=10% Similarity=0.002 Sum_probs=95.6
Q ss_pred HhhhccccccchhhHHHhhh-hccCcchhHHHHHHHHHHHHHHHHhHHHHHhh----hchhHHHHHHHHHHHHHH-HHHH
Q 015068 60 IQFGFTCGYSSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRKGSLMIAAVPNIIGW-LIIS 133 (413)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~l~~~~~~~~~~~-~~~~ 133 (413)
+......+.+...+|.+.++ .|.|..+.+.+...+..+.+++.+++|+++|| ..+|........++.+.. ....
T Consensus 283 ~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~ 362 (495)
T KOG2533|consen 283 FFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLL 362 (495)
T ss_pred HHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555556667777777 56899999999999999999999999999999 777877777766666554 4444
Q ss_pred HhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcc-hhHhhHHHHHHHHHHHHHHHhhcc-----cchHHHHHh
Q 015068 134 FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR-GSLGSVNQLSVTIGIMLAYLLGLF-----VNWRVLAVL 205 (413)
Q Consensus 134 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~i~~~-----~~w~~~~~~ 205 (413)
...+......+-+..+.+.+...+......++...+..| -...+....+.+.+..+++.+-.. ..|.+.|+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~ 440 (495)
T KOG2533|consen 363 AAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYM 440 (495)
T ss_pred hhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHH
Confidence 444344444444444455666777778888887755444 344444555555554444443322 267777744
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00017 Score=67.25 Aligned_cols=122 Identities=11% Similarity=0.196 Sum_probs=109.2
Q ss_pred HHhhhhccCcchhHHHHHHHHHHHHHHHHhHH-HHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhh
Q 015068 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASG-QIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVG 153 (413)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g-~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 153 (413)
.+...++++..+.+...+...+...+++++.. .+...+|-|+++..|+..-.+..+..+++++.|+.+....+.++. +
T Consensus 267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~ 345 (463)
T KOG2816|consen 267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-G 345 (463)
T ss_pred EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-c
Confidence 36778999999999998888888888888877 778889999999999999999999999999999999999888875 5
Q ss_pred hhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
...+...+.++.+..++++|+..++....-.+...++|.+-+.+
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 77889999999999999999999999999999999888877654
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.2e-05 Score=67.99 Aligned_cols=127 Identities=15% Similarity=0.196 Sum_probs=111.8
Q ss_pred hhhHHH-hhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhc--hhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHH
Q 015068 71 PTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG--RKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLL 147 (413)
Q Consensus 71 ~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 147 (413)
...+.+ .+.+|.++.|.|-+.+...++..+.+....+..||.. -+-.+..++.+..=..++.+.++....+..+-.+
T Consensus 282 ~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l 361 (451)
T KOG2615|consen 282 NTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTL 361 (451)
T ss_pred hhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 333334 4679999999999999999999999999999999987 7777778877777777788888999999999999
Q ss_pred HhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
-.+..+...+....++....|.++||..+|+......++-.+||++++.+
T Consensus 362 ~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i 411 (451)
T KOG2615|consen 362 KSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVI 411 (451)
T ss_pred HHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence 99999899999999999999999999999999999999999999999665
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0032 Score=59.23 Aligned_cols=115 Identities=12% Similarity=0.122 Sum_probs=73.8
Q ss_pred CcchhHHHHHHHHH-HHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh---------cC---------------
Q 015068 83 TISEFSIFGSLANV-GAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---------KD--------------- 137 (413)
Q Consensus 83 s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~--------------- 137 (413)
.+..+.++=....+ +..+...+..+++++++|.+++-+....+.....+.++. ++
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 33445555443333 445567778999999999999887776666666655542 11
Q ss_pred -------hhHHHHHHHHHhhhhhhhhh-hHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 138 -------SSFLFMGRLLEGFGVGVISY-TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 138 -------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
.|.+.+..++.-+-...... .-..+.+|.++.++-.|..++...+.++|.++++.+...+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222222222222222 3467889999999999999999999999998887766444
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0035 Score=55.47 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=88.1
Q ss_pred HHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHh-----hhchhHHHHH-HHHHHHHHHHHH
Q 015068 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE-----YIGRKGSLMI-AAVPNIIGWLII 132 (413)
Q Consensus 59 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~l~~-~~~~~~~~~~~~ 132 (413)
+..+|.-.+... .+|.+.+.-|+|.++.+...-++. - ..--+++.++.| |+||||.-++ +..+.+..+...
T Consensus 40 YllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~-P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllL 116 (510)
T KOG3574|consen 40 YLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW-P-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLL 116 (510)
T ss_pred HHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh-H-HHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHH
Confidence 455677777777 888888888888887765433221 1 123567888889 9999987654 344444444444
Q ss_pred HHh-----------cChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhh
Q 015068 133 SFS-----------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (413)
Q Consensus 133 ~~~-----------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 194 (413)
+.. ++...+...-++.-+.++.-..+.-.+.-.+..+++-|-+......+...|.+++..+-
T Consensus 117 s~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 117 SYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred hhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 432 23333434456666777777777788888888888888888777777777777765543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00031 Score=63.57 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcC
Q 015068 88 SIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167 (413)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 167 (413)
+.+.-+-.+-..+..+.+.+..+|+..+.=......+..++.++.++++|.+.-+++-++.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 33444455566666777788889988665566777788889999999999999999999999999988887777644 55
Q ss_pred CCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhHHHHHHHHhhh-ccccC
Q 015068 168 PQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGL-FFIPE 222 (413)
Q Consensus 168 ~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~~-~~~~e 222 (413)
++ ...+-+..+.+.+.++|+..-..+ +-|..+++...+.++..+.. +.+|.
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 53 345667777777777766543222 45667766665555444443 34543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.03 Score=51.63 Aligned_cols=126 Identities=11% Similarity=0.076 Sum_probs=87.3
Q ss_pred hhHHHhhhhccC---cchhHHHHHHHHH-HHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh---------cC-
Q 015068 72 TQAEIISDLKLT---ISEFSIFGSLANV-GAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---------KD- 137 (413)
Q Consensus 72 ~~~~i~~~~~~s---~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~- 137 (413)
.+-.+.+.+.++ +..+.++-+..-+ +..+..++.+++.++..+.+++-..+..+....+++++. ++
T Consensus 45 ~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~ 124 (509)
T COG3202 45 LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDP 124 (509)
T ss_pred HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCH
Confidence 334467776655 4456777777777 677888999999999999999988777777777777653 11
Q ss_pred ----------------------hhHHHHHHHHHhhhhhhhhh-hHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhh
Q 015068 138 ----------------------SSFLFMGRLLEGFGVGVISY-TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (413)
Q Consensus 138 ----------------------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 194 (413)
.|...+...+.-+=...... .-.....|.+..++-.|..++++.+.+++..++..+.
T Consensus 125 ~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~ 204 (509)
T COG3202 125 EFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVT 204 (509)
T ss_pred HHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 12222222222222222222 3456788999989999999999999999999888887
Q ss_pred ccc
Q 015068 195 LFV 197 (413)
Q Consensus 195 ~~~ 197 (413)
.++
T Consensus 205 ~~~ 207 (509)
T COG3202 205 SWL 207 (509)
T ss_pred HHH
Confidence 766
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0012 Score=63.60 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=102.0
Q ss_pred hHHHhhhh-cc-CcchhHH-HHHHHHHHHHHHHHhHHHHHhhhchh--------HHHHHHHHHHHHHHHHHHHhcChhHH
Q 015068 73 QAEIISDL-KL-TISEFSI-FGSLANVGAMVGAIASGQIAEYIGRK--------GSLMIAAVPNIIGWLIISFSKDSSFL 141 (413)
Q Consensus 73 ~~~i~~~~-~~-s~~~~~~-~~s~~~~~~~~~~~~~g~l~dr~Grr--------~~l~~~~~~~~~~~~~~~~~~~~~~l 141 (413)
+.++.+.+ |. ++.+... ..++..++..+|-+..|.+....-+| +..+....+..++.++.++.-.-..+
T Consensus 376 ~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~p~~~L 455 (591)
T PTZ00207 376 ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTLPKAAL 455 (591)
T ss_pred HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHCCccHh
Confidence 44677777 65 2232233 78889999999999999887222222 23333333366666666665444789
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHH-HHhhccc--------------c---hHHHH
Q 015068 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA-YLLGLFV--------------N---WRVLA 203 (413)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~i~~~~--------------~---w~~~~ 203 (413)
++.-++.|++.|..+++....++|.|. |+-|+-..+......+|..+- ..+.+.+ | .|..|
T Consensus 456 ~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~ 534 (591)
T PTZ00207 456 PLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPL 534 (591)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHH
Confidence 999999999999999999999999999 889999888888888887764 3333332 2 77888
Q ss_pred HhhHHHHHHHHhh
Q 015068 204 VLGVLPCTLLIPG 216 (413)
Q Consensus 204 ~~~~~~~~~~~~~ 216 (413)
++.+..+++..+.
T Consensus 535 ~v~~~~~~~g~~~ 547 (591)
T PTZ00207 535 AFLLGLSFLAFIT 547 (591)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777666554
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0012 Score=62.37 Aligned_cols=111 Identities=16% Similarity=0.178 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhch--hH-----HHHHHHHHHHHHHHHHHHh---------cChhHHHHHHHHHhh
Q 015068 87 FSIFGSLANVGAMVGAIASGQIAEYIGR--KG-----SLMIAAVPNIIGWLIISFS---------KDSSFLFMGRLLEGF 150 (413)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~g~l~dr~Gr--r~-----~l~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~ 150 (413)
.+|..++..+...+.+|+.+++-.|.+| |. =+.+|+++.+++.+...++ .+.+++++..+++++
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~ 389 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF 389 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 5788889999898989998888777743 21 1567788888887666432 266778889999999
Q ss_pred hhhhhhhhHHHHHHhcCCCCcchhHhhHHHHH-HHHHHHHHHHhhccc
Q 015068 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLS-VTIGIMLAYLLGLFV 197 (413)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~i~~~~ 197 (413)
|.-...|++.+++++..|++.||+.+|.+... ..+|..++..+++..
T Consensus 390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999774 367777776665443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00088 Score=64.63 Aligned_cols=128 Identities=23% Similarity=0.326 Sum_probs=95.8
Q ss_pred HHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhH---HHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcch
Q 015068 97 GAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF---LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRG 173 (413)
Q Consensus 97 ~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~---l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 173 (413)
....+....+...|++|||.....+.++..++.++.+...+... ..+...+...+.+..+.....+..|.+|...|.
T Consensus 362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~ 441 (521)
T KOG0255|consen 362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN 441 (521)
T ss_pred HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 45555566689999999999999999999999999998775443 556666666677777777799999999999999
Q ss_pred hHhhHHHHHHHHHHHHHHHhhcccc--hH-HHHHh-hHHHHHHHHhhhccccCch
Q 015068 174 SLGSVNQLSVTIGIMLAYLLGLFVN--WR-VLAVL-GVLPCTLLIPGLFFIPESP 224 (413)
Q Consensus 174 ~~~~~~~~~~~~g~~~~~~i~~~~~--w~-~~~~~-~~~~~~~~~~~~~~~~e~~ 224 (413)
.+.+.......+|.+++|.+..... +. ..+.+ +....+...+...++||+.
T Consensus 442 ~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~ 496 (521)
T KOG0255|consen 442 TAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETK 496 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccC
Confidence 9999999999999999988875441 11 11112 2233333344457788874
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00036 Score=47.32 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=49.0
Q ss_pred HHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHH
Q 015068 294 QQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSG 355 (413)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 355 (413)
..++....+.-|.+.++++.|+++.+ ....+..+..+++.++.|+++||.++++........
T Consensus 11 ~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 11 FYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 33344566777888889999998877 666677888999999999999999999887655443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0025 Score=58.81 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=96.5
Q ss_pred chhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH---hc-------Chh
Q 015068 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF---SK-------DSS 139 (413)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~-------~~~ 139 (413)
...+..+...-|+++..+|..-+...+....+.+...++.+|+|..|.=..+.....++..++.. .+ +..
T Consensus 278 ~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~ 357 (432)
T PF06963_consen 278 GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAY 357 (432)
T ss_pred cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Confidence 34444555556999999999999999999999999999999999988887777665554444432 11 233
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
.++.+-.+.=+|.=.+.....-++.|..|+++||...+...+..++--.+...++-.+
T Consensus 358 ~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 358 LLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444555555666677888888999999999999999999888887777666655444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.001 Score=60.35 Aligned_cols=111 Identities=19% Similarity=0.181 Sum_probs=79.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHH--H---HHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhh
Q 015068 83 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV--P---NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISY 157 (413)
Q Consensus 83 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~--~---~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 157 (413)
..++..+...+|.+|..++.--...+ |+ |+..+.+.+ + ..+.....-+.++.+..++.-+..|+..|..+.
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 45677787888887766654322111 33 333333322 2 222222333467889888899999999999999
Q ss_pred hHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 158 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
.....+.|-.++++|..+++....+-++|..++.+++-.+
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998887543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0032 Score=60.55 Aligned_cols=149 Identities=15% Similarity=0.123 Sum_probs=114.5
Q ss_pred cccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHhcC--------
Q 015068 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKD-------- 137 (413)
Q Consensus 67 ~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~-------- 137 (413)
+.....+..+.++++.+...+.-..+.+.-......++++.++|- +||-+++.++.++..+|.++..++..
T Consensus 55 g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~ 134 (571)
T KOG1237|consen 55 GLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFM 134 (571)
T ss_pred cchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence 334567778899999988888888899988889999999999997 59999999999998888666544211
Q ss_pred -----------------hhHHHHHHHHHhhhhhhhhhhHHHHHHhcCC---CCc---chhHhhHHHHHHHHHHHHHHHhh
Q 015068 138 -----------------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAP---QNM---RGSLGSVNQLSVTIGIMLAYLLG 194 (413)
Q Consensus 138 -----------------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~g~~~~~~i~ 194 (413)
...+..+.-+..+|.|+.-+...++-+|-++ +++ +...+.++....++|..++..+-
T Consensus 135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~ 214 (571)
T KOG1237|consen 135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL 214 (571)
T ss_pred ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH
Confidence 1256667777888999999999999999998 322 23567778888888888877666
Q ss_pred ccc----chHHHHHhhHHHHHHHHh
Q 015068 195 LFV----NWRVLAVLGVLPCTLLIP 215 (413)
Q Consensus 195 ~~~----~w~~~~~~~~~~~~~~~~ 215 (413)
-+. +|.+-|.+..+...++++
T Consensus 215 vyiq~~~~w~lgf~i~~~~~~lai~ 239 (571)
T KOG1237|consen 215 VYIQDNVGWKLGFGIPTVLNALAIL 239 (571)
T ss_pred HhhhhcccceeeccHHHHHHHHHHH
Confidence 555 899888876665544443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0016 Score=59.86 Aligned_cols=104 Identities=14% Similarity=0.283 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh--c-Ch------hHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCC---cchhHhhHHHHHH
Q 015068 116 GSLMIAAVPNIIGWLIISFS--K-DS------SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN---MRGSLGSVNQLSV 183 (413)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~~~--~-~~------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 183 (413)
|++.++.++..+|.++..++ + +. ..++++-.+.++|.|..-|....+++|.++++ +|.+...++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788888999998885443 2 22 57889999999999999999999999999765 4567788899999
Q ss_pred HHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhhcc
Q 015068 184 TIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (413)
Q Consensus 184 ~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~ 219 (413)
++|..++..+..++ +|.+.|.++++..++.++..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999888877 7999999888776666554433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.031 Score=51.86 Aligned_cols=108 Identities=20% Similarity=0.363 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHh---hhchhHHHHHHHHHHHHHHHHHHHh------------------cChhHHHHHHH
Q 015068 88 SIFGSLANVGAMVGAIASGQIAE---YIGRKGSLMIAAVPNIIGWLIISFS------------------KDSSFLFMGRL 146 (413)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~g~l~d---r~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~ 146 (413)
+.-.-...+|..+++.+.+.+++ ++||++.+.++.++..++.++.-.. +++...++.-+
T Consensus 282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence 33333344555556666666664 5799999999988888888776553 13557778899
Q ss_pred HHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhcc
Q 015068 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF 196 (413)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 196 (413)
+.|++-+........++.+.. +++|..+.++...-..++..++......
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999 5778888888877777776665544433
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.12 Score=48.04 Aligned_cols=137 Identities=18% Similarity=0.156 Sum_probs=78.6
Q ss_pred hHHHHhhhccccccchhhHHHhhh--hccCcchhHHHHHHHHHHHHHHHHhHHHHHh-----hhchhHHHHHH-HHHHHH
Q 015068 56 ALGPIQFGFTCGYSSPTQAEIISD--LKLTISEFSIFGSLANVGAMVGAIASGQIAE-----YIGRKGSLMIA-AVPNII 127 (413)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~l~~~-~~~~~~ 127 (413)
.+.++++|.-.+.....+|.+.++ -++|.+|.+...-+. .-+ ---+++.++.| |+||||.-++- -.+.++
T Consensus 6 ~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~-~Pf-SlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~ 83 (544)
T PF13000_consen 6 VLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLAS-YPF-SLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGI 83 (544)
T ss_pred HHHHHHcCcccccccccchhhhccccCCCChhHheeeeeee-chh-HHHHhhhhhhhhhcccccCCcchhhhHHHHHHHH
Confidence 445567777777765667888777 678887765532110 011 12345555555 89999987653 333333
Q ss_pred HHHHHHHhc----------------------Ch--hHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHH
Q 015068 128 GWLIISFSK----------------------DS--SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSV 183 (413)
Q Consensus 128 ~~~~~~~~~----------------------~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 183 (413)
..+..+... +. ..+...-++.=+-++--..+.-.+.-....+++++.+..-...+.
T Consensus 84 ~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~ 163 (544)
T PF13000_consen 84 LMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQ 163 (544)
T ss_pred HHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHh
Confidence 333333211 01 122233333333444455555667777777888888887777777
Q ss_pred HHHHHHHHHhh
Q 015068 184 TIGIMLAYLLG 194 (413)
Q Consensus 184 ~~g~~~~~~i~ 194 (413)
+.|.+++..+-
T Consensus 164 ~~Gyfls~tvF 174 (544)
T PF13000_consen 164 TAGYFLSFTVF 174 (544)
T ss_pred hhhHHHHHHHH
Confidence 77777765554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0047 Score=57.84 Aligned_cols=145 Identities=15% Similarity=0.241 Sum_probs=104.9
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH----------hcChhHHHHHHHHHhh
Q 015068 81 KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF----------SKDSSFLFMGRLLEGF 150 (413)
Q Consensus 81 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l~G~ 150 (413)
|.++...+.+..+..++..+|..+.....-++.-|+++....++..+..+.... .++.+..+.--++..+
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~ 330 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV 330 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence 378888899988888999999999988888889899988887777666554221 1222333334566667
Q ss_pred hhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c--------hHHHHHhhHHHHHHHHhhhc
Q 015068 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N--------WRVLAVLGVLPCTLLIPGLF 218 (413)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~--------w~~~~~~~~~~~~~~~~~~~ 218 (413)
..+..+-....+++|..|+...|...++.....++|..++..++..+ + -.+..+++.+..++.+.+..
T Consensus 331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~ 410 (433)
T PF03092_consen 331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLF 410 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 66777777788999999999999999999999999888887777665 1 22344455555555555666
Q ss_pred cccCchH
Q 015068 219 FIPESPR 225 (413)
Q Consensus 219 ~~~e~~~ 225 (413)
++|+..+
T Consensus 411 lLp~~~~ 417 (433)
T PF03092_consen 411 LLPPQKR 417 (433)
T ss_pred HcCCCch
Confidence 6776533
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.027 Score=53.92 Aligned_cols=120 Identities=17% Similarity=0.110 Sum_probs=69.1
Q ss_pred HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHH---HHH-HHH---HHhcCh-hHHHHHHHH
Q 015068 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI---IGW-LII---SFSKDS-SFLFMGRLL 147 (413)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~-~~~---~~~~~~-~~l~~~r~l 147 (413)
+.--+|-+....+.+.+++..|.++|+.+.+++.++.-++.. ..-..+.. ++. ++. ++...+ ..++..-++
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 119 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL 119 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568888889999999999999999999988744333322 11111111 111 111 111111 122334566
Q ss_pred HhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
.++..|+..|....+..+... ++-++..|-......+|.++|.++.+++
T Consensus 120 ~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 120 IGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 778888888887776665332 2234455555666666666666665544
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.051 Score=50.36 Aligned_cols=110 Identities=18% Similarity=0.201 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHhhhchh-------HHHHHHHHHHHHHHHHHHHh----------cChhHHHHHHHHH
Q 015068 86 EFSIFGSLANVGAMVGAIASGQIAEYIGRK-------GSLMIAAVPNIIGWLIISFS----------KDSSFLFMGRLLE 148 (413)
Q Consensus 86 ~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l~ 148 (413)
..+|..+...+.-.+.+++..++..+.++| .-+-+++.+.+++.++.... .+.++++...+++
T Consensus 325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~ 404 (498)
T COG3104 325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ 404 (498)
T ss_pred CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence 457888888899999999999988886554 22445666666666655443 2578888999999
Q ss_pred hhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhc
Q 015068 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195 (413)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 195 (413)
++|.=...|++.+++....|++-.+..++.+......|..++..+++
T Consensus 405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 99999999999999999999999999999999988888888877776
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00078 Score=62.25 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=63.9
Q ss_pred HHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHH-HHHHHHHHHHHHHHhc
Q 015068 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI-AAVPNIIGWLIISFSK 136 (413)
Q Consensus 59 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~~ 136 (413)
.+..+...+.+.|.++.+-+++|+++++.|.+...--+..+++.|++|+++||+-+||.+++ +++....+.++..+.+
T Consensus 20 ~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv~ 98 (618)
T KOG3762|consen 20 YLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFVP 98 (618)
T ss_pred eeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeecc
Confidence 34445567778889999999999999999999999999999999999999999987666555 4666666777666653
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0091 Score=50.27 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=33.5
Q ss_pred CcchhHhhHHHHHHHHHHHHHHH--hhc-cc------chHHHHHhhHHHHHHHHhhhccc
Q 015068 170 NMRGSLGSVNQLSVTIGIMLAYL--LGL-FV------NWRVLAVLGVLPCTLLIPGLFFI 220 (413)
Q Consensus 170 ~~r~~~~~~~~~~~~~g~~~~~~--i~~-~~------~w~~~~~~~~~~~~~~~~~~~~~ 220 (413)
|+|+....+...+.++|.++... +-. -. +|++.+.+.+++.++-++...++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777788888888876533 322 11 79999888777665555544443
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.25 Score=43.29 Aligned_cols=74 Identities=14% Similarity=0.218 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcC
Q 015068 93 LANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167 (413)
Q Consensus 93 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 167 (413)
..++..+..+++.+.+.+++|-|+++.++...+..... .-+-+.+..++-+-...|++.+..+..--+|+++.-
T Consensus 66 ~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 66 ALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 34556667777788999999999999988877765332 224467888999999999999988877777766654
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.027 Score=47.94 Aligned_cols=76 Identities=17% Similarity=0.057 Sum_probs=59.9
Q ss_pred HHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHHHHh
Q 015068 293 LQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFL 369 (413)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (413)
....+..+.+..|.|.+-++.|+++.+ .......++..+ .+..|.+.|++|.+.++.+|.+...++..++......
T Consensus 12 ~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~ 89 (250)
T PF06813_consen 12 QLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG 89 (250)
T ss_pred HHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344456778899999988888998888 334444566655 4888999999999999999999999999988776544
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.16 Score=47.44 Aligned_cols=50 Identities=8% Similarity=-0.032 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHH
Q 015068 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY 191 (413)
Q Consensus 137 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 191 (413)
.++..++.-++.|++.+.......++.+. +|++ .+..+..+.+++++++.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s 154 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPST----YSSAVMSGQGLAGVLTS 154 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhccc-CCHH----HHHHHHhcchhHHHHHH
Confidence 35566667788899988888888877664 5543 34444445555444433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.069 Score=49.78 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=56.3
Q ss_pred chhHHhchHHHHhhcCCCCch---hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHH
Q 015068 299 INGVLFYSSNIFANAGISSSN---VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (413)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 366 (413)
=...++..|.+.++.|+++.+ ........+..++.+.+|++.||+|.|+++..+.+.-.+..+++++.
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa 112 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG 112 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777888998777 56666778899999999999999999999999988888888887764
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.059 Score=47.93 Aligned_cols=55 Identities=15% Similarity=0.101 Sum_probs=41.0
Q ss_pred HHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHH
Q 015068 308 NIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (413)
Q Consensus 308 ~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 362 (413)
.++++.|++..+ ..+..-.+.+.+...+.|.+.||+|||+..+..+++..++++.
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~ 115 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT 115 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 445677998777 3444445666777888899999999999888777777777654
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.066 Score=48.95 Aligned_cols=103 Identities=21% Similarity=0.127 Sum_probs=72.5
Q ss_pred hhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhch-hHHHHHHHHHHHHHHHHHHHh----cChhHHHHHHHHHhhhh
Q 015068 78 SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLIISFS----KDSSFLFMGRLLEGFGV 152 (413)
Q Consensus 78 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~ 152 (413)
..-|.+....|++......+..+++.+.|.+.||... |.+.++......++.+..... .+.+.+...-.+.|.+.
T Consensus 294 ~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~ 373 (480)
T KOG2563|consen 294 CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFG 373 (480)
T ss_pred ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhh
Confidence 3345666788999999999999999999999999864 666666666666664332222 13345555667778888
Q ss_pred hhhhhhHHHHHHhcCCCCcchhHhhHHH
Q 015068 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQ 180 (413)
Q Consensus 153 g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 180 (413)
....|...-+-.|..-|..-+...|+.+
T Consensus 374 ~~~~Pig~ElgvE~TyPv~E~tSsGll~ 401 (480)
T KOG2563|consen 374 TGYLPIGFELGVETTYPVAEGTSSGLLN 401 (480)
T ss_pred cCCCCcceeeeeeeccccCCcccceeEE
Confidence 8889999888888764444444455443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.02 Score=53.33 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=54.0
Q ss_pred HHHHH-HHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHH
Q 015068 140 FLFMG-RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (413)
Q Consensus 140 ~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~ 210 (413)
.++++ -++.|++.-.......+.-+|...|++++.+.+.+......+..+||++.... |.|+...+.+...
T Consensus 389 ~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~ 464 (488)
T KOG2325|consen 389 LYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLL 464 (488)
T ss_pred hheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHH
Confidence 33444 45567776666777788899999999999999999999999999998887665 6776665544433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.017 Score=56.93 Aligned_cols=83 Identities=18% Similarity=0.097 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHH
Q 015068 286 IGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 363 (413)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 363 (413)
+...+..+.+......+..-.+.+-++++++..+ +......++..++.++.+++.||.|||+.+.++.++++++.+++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 3333344444333344555566666777887766 66667788999999999999999999999999999999999998
Q ss_pred HHHHH
Q 015068 364 SVAFF 368 (413)
Q Consensus 364 ~~~~~ 368 (413)
++..+
T Consensus 116 alphf 120 (633)
T TIGR00805 116 SLPHF 120 (633)
T ss_pred hChHH
Confidence 87754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.8 Score=41.76 Aligned_cols=156 Identities=8% Similarity=0.005 Sum_probs=73.7
Q ss_pred ccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHH---HHHHHHHHHHh-----
Q 015068 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP---NIIGWLIISFS----- 135 (413)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~---~~~~~~~~~~~----- 135 (413)
...+.+..+.+...+++.-+.. .......+.+...+..++...+--+...|....++..+ ..+....+.++
T Consensus 32 lpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i~~l~~~~v~~~ 110 (406)
T KOG1479|consen 32 LPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFIVTLDLALVKTD 110 (406)
T ss_pred cchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3445555566667766644433 44444555555555555555444444332222222111 11122222222
Q ss_pred ----cChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhh---ccc------chHHH
Q 015068 136 ----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG---LFV------NWRVL 202 (413)
Q Consensus 136 ----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~---~~~------~w~~~ 202 (413)
..+...++.-.+.+++.|..........++. |+|.- .-..++.++++.+..++. ... +=...
T Consensus 111 ~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~yt----qavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~y 185 (406)
T KOG1479|consen 111 TWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYT----QAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIY 185 (406)
T ss_pred CccchhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHH----HHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehh
Confidence 2355666677888888888887777766664 43432 222233333333222221 111 12233
Q ss_pred HHhhHHHHHHHHhhhccccCchH
Q 015068 203 AVLGVLPCTLLIPGLFFIPESPR 225 (413)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~e~~~ 225 (413)
|.+..+..++++++...+|+.|-
T Consensus 186 F~~s~~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 186 FITSTVILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhcchH
Confidence 44455555555555556666653
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.2 Score=46.92 Aligned_cols=106 Identities=16% Similarity=0.194 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhchh--HHHHHH--HHHHHHHHHHHHHh---------cChhHHHHHHHHHhhhhhh
Q 015068 88 SIFGSLANVGAMVGAIASGQIAEYIGRK--GSLMIA--AVPNIIGWLIISFS---------KDSSFLFMGRLLEGFGVGV 154 (413)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~--~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~~~g~ 154 (413)
-....++.+|-.+|..+..+. ..-++| ++.+.+ =+++.-..++|..- ++-+..++.-++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 455666777777777654332 111222 333222 22233333344322 3556677789999999999
Q ss_pred hhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhh
Q 015068 155 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (413)
Q Consensus 155 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 194 (413)
.......+..+..++++|..+..+......+|..+|..++
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888888888888877664
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.086 Score=48.38 Aligned_cols=79 Identities=15% Similarity=0.128 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHH
Q 015068 288 IGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (413)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 365 (413)
..+....+..--+.+..-.+..-+..+.++.. +......++..+++++.|++.||++|++++.+|..+-.++.+.-++
T Consensus 38 l~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~f 117 (493)
T KOG1330|consen 38 LCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGF 117 (493)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHH
Confidence 33444444444445544445555555776665 7778888899999999999999999999999999988888887776
Q ss_pred H
Q 015068 366 A 366 (413)
Q Consensus 366 ~ 366 (413)
.
T Consensus 118 s 118 (493)
T KOG1330|consen 118 S 118 (493)
T ss_pred H
Confidence 5
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.18 Score=34.61 Aligned_cols=65 Identities=15% Similarity=-0.026 Sum_probs=53.4
Q ss_pred HHhchHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHH
Q 015068 302 VLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (413)
Q Consensus 302 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 366 (413)
.....|...++.+++..+ +......++.++|.+...++.++.++++.+..+.+...+..+.+++.
T Consensus 11 yTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 11 YTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888888888777 77777889999999999999998888888888888888888777754
|
Note that many members are hypothetical proteins. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.14 Score=38.89 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHH
Q 015068 325 LGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (413)
Q Consensus 325 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 365 (413)
..++..++.+..+++.||+|||+.+..+.....++.+.+..
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 47 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL 47 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999998888777777666543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=94.75 E-value=1.1 Score=41.20 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=74.2
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHH--HHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHH
Q 015068 85 SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM--IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVY 162 (413)
Q Consensus 85 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~--~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 162 (413)
..-|.+-++..+..+++.+..|++..++.+-.-+. ...++.+...++++..+|.+...++-++.+...-...+....-
T Consensus 285 vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~q 364 (412)
T PF01770_consen 285 VYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQ 364 (412)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33488999999999999999999987777744444 3455556666777888999999999999888888888887777
Q ss_pred HHhcCCCCcchhHhhHHH
Q 015068 163 IAEIAPQNMRGSLGSVNQ 180 (413)
Q Consensus 163 i~~~~~~~~r~~~~~~~~ 180 (413)
++.....+.-+..+|+..
T Consensus 365 IA~~l~~e~yaLVFGiNt 382 (412)
T PF01770_consen 365 IAKNLSEERYALVFGINT 382 (412)
T ss_pred HHHhccccceeeeeeeHH
Confidence 777777666666666654
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.013 Score=56.25 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHhHHHHhhhccccccchhhH-HHhhhhccCcchhHHHHHHHHH-HHHHHHHhHHHHHhhhc--hhHHHHHHHHHHHH
Q 015068 53 LVVALGPIQFGFTCGYSSPTQA-EIISDLKLTISEFSIFGSLANV-GAMVGAIASGQIAEYIG--RKGSLMIAAVPNII 127 (413)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~ 127 (413)
....++.....+....+....| .++.+|+.++++.+++.++..+ +.++|.+++|.+..|+. .|..+....+...+
T Consensus 308 ~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v 386 (539)
T PF03137_consen 308 MCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIV 386 (539)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHH
Confidence 3344444444455555555665 4677899999999998876666 66789999999999874 45554444433333
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.11 Score=44.92 Aligned_cols=115 Identities=20% Similarity=0.169 Sum_probs=82.6
Q ss_pred hhhccCc-chhHHHHHHHHHHHHHHHHhHHHHHhhhch-h-----HHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhh
Q 015068 78 SDLKLTI-SEFSIFGSLANVGAMVGAIASGQIAEYIGR-K-----GSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (413)
Q Consensus 78 ~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r-----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (413)
+.+..+. +|.-|....|.+|..+.. -+-|+=+ + ..+..-.+++.+...+..+.++++...+.-+..|+
T Consensus 280 ~g~sls~~sqYRwyqvlYQlGVFiSR-----SS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGL 354 (409)
T KOG3880|consen 280 HGFSLSKDSQYRWYQVLYQLGVFISR-----SSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGL 354 (409)
T ss_pred cCCccchhhcchhhheeeeeeEEEEe-----ccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 4444443 357788888887764422 1222211 1 12223345555566667788999999999999999
Q ss_pred hhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 015068 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (413)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (413)
-.|..++...--+.+-.++++|-.+++....+-.+|..++.+++-.+
T Consensus 355 lGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 355 LGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred cCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 88888888888888888889999999999999999999988877554
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.038 Score=49.24 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHhh-hchhHHHHHH--HHHHHHHHHHHH----------HhcChhHHHHHHHHHhhhhhhhh
Q 015068 90 FGSLANVGAMVGAIASGQIAEY-IGRKGSLMIA--AVPNIIGWLIIS----------FSKDSSFLFMGRLLEGFGVGVIS 156 (413)
Q Consensus 90 ~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~--~~~~~~~~~~~~----------~~~~~~~l~~~r~l~G~~~g~~~ 156 (413)
...++.++-.+|..+.++.--+ -.+|+..+.+ =+++.-..++|. ..+|-+..++.-++.|+..|-..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 4567888888888877764211 1244444321 222222222231 22355667778999999999999
Q ss_pred hhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhh
Q 015068 157 YTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (413)
Q Consensus 157 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 194 (413)
.....+..+..++++|..+..+.......|..+|..++
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp HHHH----------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888877888877776665
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=92.37 E-value=1.8 Score=33.94 Aligned_cols=43 Identities=14% Similarity=0.055 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHH
Q 015068 320 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (413)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 362 (413)
....+......++.++.+.+.+++|.|+.++++.+...+-...
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~ 83 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS 83 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5555666677788889999999999999999888777654443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.29 E-value=1.2 Score=40.68 Aligned_cols=106 Identities=14% Similarity=0.165 Sum_probs=70.7
Q ss_pred hHHHHHH-HHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH---------HhcChhHHHHHHHHHhhhhhhhh
Q 015068 87 FSIFGSL-ANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---------FSKDSSFLFMGRLLEGFGVGVIS 156 (413)
Q Consensus 87 ~~~~~s~-~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---------~~~~~~~l~~~r~l~G~~~g~~~ 156 (413)
.-.+..+ +.+.-.+|.+.+.++-++= ||.. .+..++-.+..=++. .-.+-+.+.+.-.+.|+..|-..
T Consensus 284 ~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l-~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt 361 (406)
T KOG1479|consen 284 ALLLVFLSFNVFDLIGSILAALLTWPD-PRKL-TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT 361 (406)
T ss_pred HHHHHHHHhHHHHHhhhhhhhcccCCC-Ccee-hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh
Confidence 3445555 7888888866665554432 3333 333332222222222 23466788889999999999999
Q ss_pred hhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhh
Q 015068 157 YTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (413)
Q Consensus 157 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 194 (413)
.....+..+..+++++..+-.+.......|...|..++
T Consensus 362 sl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 362 SLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred hheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999888888887777777777777776554
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.11 Score=46.20 Aligned_cols=19 Identities=5% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015068 321 ATFGLGVVQVVATGVNTWL 339 (413)
Q Consensus 321 ~~~~~~~~~~~~~~~~g~l 339 (413)
....+.++..+|+.+..+.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~ 205 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWP 205 (309)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHhcchhccee
Confidence 4556788999999988874
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=88.54 E-value=3.4 Score=40.98 Aligned_cols=56 Identities=18% Similarity=0.123 Sum_probs=39.7
Q ss_pred hhcCCCCch--hHHHHHHHHHHHHHHHHHHHHhh-cCCcHHHHHHhHHHHHHHHHHHHH
Q 015068 311 ANAGISSSN--VATFGLGVVQVVATGVNTWLMDK-AGRRLLLLISSSGMAASFFLVSVA 366 (413)
Q Consensus 311 ~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~ 366 (413)
+..|+++.. ..........-+..+++|++.|+ +|+++.+..+.++..++.+++++.
T Consensus 16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~ 74 (654)
T TIGR00926 16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG 74 (654)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 345776555 23333333444667788999997 699999999999999998888763
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=85.12 E-value=13 Score=31.84 Aligned_cols=100 Identities=18% Similarity=0.191 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhh-hchhHHHH----HHHHHHHHHHHHHH-Hhc----ChhHHHHHHHHHhhhhhhhhh
Q 015068 88 SIFGSLANVGAMVGAIASGQIAEY-IGRKGSLM----IAAVPNIIGWLIIS-FSK----DSSFLFMGRLLEGFGVGVISY 157 (413)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~----~~~~~~~~~~~~~~-~~~----~~~~l~~~r~l~G~~~g~~~~ 157 (413)
....-++..|..+|.+..|+.... +-||+.+. .+.++..+..+..+ +.. ++..+++.-++.|++.=+..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 333445555666666777777654 45555544 23444444444421 122 356678888888887655565
Q ss_pred hHHHHHHhcCCCCcchhHhhHHHHHHHHHHH
Q 015068 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIM 188 (413)
Q Consensus 158 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 188 (413)
+....-.|.= ..++-+..-.++..+++|.+
T Consensus 224 ViL~lPhEyK-~~~pk~ig~~Fg~iWGfGY~ 253 (267)
T PF07672_consen 224 VILNLPHEYK-GYNPKKIGIQFGLIWGFGYI 253 (267)
T ss_pred HHhcChhhhc-CCCcceehhHHHHHHHHHHH
Confidence 5544444432 22222222334445555543
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.26 E-value=5 Score=35.91 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhchhH--HHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHh
Q 015068 88 SIFGSLANVGAMVGAIASGQIAEYIGRKG--SLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAE 165 (413)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~--~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 165 (413)
|-.-++..+..+++.+..|.+.-++.|.. .+.++....+...++++..++++..+++.++.+.-.....++...-+++
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~ 353 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR 353 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence 66777888889999999999988777653 3344555666666667778899999999888888787888888888888
Q ss_pred cCCCCcchhHhhHHHH
Q 015068 166 IAPQNMRGSLGSVNQL 181 (413)
Q Consensus 166 ~~~~~~r~~~~~~~~~ 181 (413)
....+.-|..+|+...
T Consensus 354 nL~~e~~gLvFGiNTF 369 (433)
T KOG3810|consen 354 NLSSELFGLVFGINTF 369 (433)
T ss_pred hhhhhhheeeeehHHH
Confidence 8887777777777543
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.45 E-value=1.4 Score=40.74 Aligned_cols=79 Identities=6% Similarity=-0.075 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhc
Q 015068 88 SIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEI 166 (413)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 166 (413)
.|=..++.+...+.+....++.+|+|-|+.+..+...+.++.-+.+..++.......|-..|+-.+....+-...++++
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y 413 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALY 413 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHH
Confidence 4555677788889999999999999987777877777888888888888888888888888865555555555544443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 413 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 2e-28 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 413 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.97 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.95 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.94 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.86 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.85 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.57 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.47 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.43 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.39 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.37 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.01 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.86 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=302.87 Aligned_cols=352 Identities=30% Similarity=0.476 Sum_probs=280.4
Q ss_pred chhhhHHHHHHhHHHHhhhccccccchhhHHHhhhhcc--------CcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhH
Q 015068 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKL--------TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKG 116 (413)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~ 116 (413)
.+..+.+.++++++.+..++|.++++..+|.+.++++. +..+.|++.+++.+|..+|++++|+++||+|||+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 35567777788889999999999999999999888743 3456789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH------------------HhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhH
Q 015068 117 SLMIAAVPNIIGWLIIS------------------FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 178 (413)
Q Consensus 117 ~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 178 (413)
+++++.+++.++.++++ +++|+++++++|+++|++.|...+....+++|+.|+++|++..++
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 99999999999999998 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccc------------chHHHHHhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCC
Q 015068 179 NQLSVTIGIMLAYLLGLFV------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGF 246 (413)
Q Consensus 179 ~~~~~~~g~~~~~~i~~~~------------~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 246 (413)
.+.+..+|..+++.++... .||+.+.+..+..++..+..+++||+|+|+..+++.+++.+.+++....
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 9999999999888776432 5888888888888888888899999999999999999999988876543
Q ss_pred CcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHH
Q 015068 247 DTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFG 324 (413)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~ 324 (413)
+...++..+.. +..+ +.++....... ...++..+......+.++.+.+.+.+|.+.+.+..+.+... .....
T Consensus 247 ~~~~~~~~~~~-~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (491)
T 4gc0_A 247 TLATQAVQEIK-HSLD--HGRKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTII 320 (491)
T ss_dssp HHHHHHHHHHH-HHHH--HHHHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred chhHHHHHHHH-HHHH--hhhhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHH
Confidence 32211111111 1100 11111111111 22334555566667777778888899999998888776554 45566
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHHHHHHHHHhccccc
Q 015068 325 LGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGA 404 (413)
Q Consensus 325 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (413)
.++..+++.++.+++.||+|||+.++.+...+.++++.++........ ....+...+++..+++.++++
T Consensus 321 ~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 389 (491)
T 4gc0_A 321 VGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-----------GIVALLSMLFYVAAFAMSWGP 389 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHHHhHHHH
Confidence 778889999999999999999999999999998888887766544332 234455566777888999999
Q ss_pred cceeeecCC
Q 015068 405 IPWVIMSEV 413 (413)
Q Consensus 405 i~~~~~~E~ 413 (413)
+.+++.+|+
T Consensus 390 ~~~~~~~E~ 398 (491)
T 4gc0_A 390 VCWVLLSEI 398 (491)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHh
Confidence 999888885
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-31 Score=247.47 Aligned_cols=278 Identities=12% Similarity=0.124 Sum_probs=219.3
Q ss_pred HHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHH
Q 015068 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL 130 (413)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 130 (413)
....+++..+..+++.....+..|.+.+++|+|..+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 106 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33444555666777778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH---HHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----c----
Q 015068 131 II---SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----N---- 198 (413)
Q Consensus 131 ~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~---- 198 (413)
++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+ +
T Consensus 107 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 186 (438)
T 3o7q_A 107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQ 186 (438)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCH
T ss_pred HHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 99 88899999999999999999999999999999999999999999999999999999999998776 2
Q ss_pred ---------------------hHHHHHhhHHHHHHHHhhhcc--ccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHH
Q 015068 199 ---------------------WRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN 255 (413)
Q Consensus 199 ---------------------w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (413)
||+.|++.+...++..+..++ .||+++. ++ .
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~-~---------------------- 240 (438)
T 3o7q_A 187 DVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NH-S---------------------- 240 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CC-C----------------------
T ss_pred cccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cc-c----------------------
Confidence 999998766655554443322 4555320 00 0
Q ss_pred HHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHH-Hhhc-CCCCch--hHHHHHHHHHHH
Q 015068 256 EIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNI-FANA-GISSSN--VATFGLGVVQVV 331 (413)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~--~~~~~~~~~~~~ 331 (413)
++++++.+..++++++++..+...+...+... .......+.+.+ +++. |.++.+ .......++.++
T Consensus 241 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 310 (438)
T 3o7q_A 241 ------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFI 310 (438)
T ss_dssp ------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------cccccchhhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHH
Confidence 01112233456667776665554444333333 234556677777 7766 887665 666667888999
Q ss_pred HHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Q 015068 332 ATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 332 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 364 (413)
+.++.+++.||++||+.+..+..+..++++++.
T Consensus 311 ~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~ 343 (438)
T 3o7q_A 311 GRFTGTWLISRFAPHKVLAAYALIAMALCLISA 343 (438)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888887777666554
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-31 Score=246.30 Aligned_cols=297 Identities=13% Similarity=0.094 Sum_probs=220.6
Q ss_pred hhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHH
Q 015068 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (413)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 126 (413)
..+......+++.+..+++...+.+.+|.+.+++ .+..+.+++.+++.++..++++++|+++||+|||++++.+.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 3445556666777778888888999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH----hcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c
Q 015068 127 IGWLIISF----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N 198 (413)
Q Consensus 127 ~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~ 198 (413)
++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+ +
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 999999999999999999999999999999999999999999999999999999999998764 7
Q ss_pred -hHHHHHhhHHHHHHHHh-hhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHh
Q 015068 199 -WRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELK 276 (413)
Q Consensus 199 -w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (413)
||+.|++.++..++..+ ..+++||+|+....+++++.. . +...+ .++..++.....+...++.+
T Consensus 184 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~---~~~~~~~~~~~~~~~~~~~~ 249 (451)
T 1pw4_A 184 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------N-DYPDD---YNEKAEQELTAKQIFMQYVL 249 (451)
T ss_dssp CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------C-C----------------CCTHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc----------c-ccccc---chhhhhcccccccchHHHHH
Confidence 99999988877666544 456678876532211111100 0 00000 00000000111111134445
Q ss_pred hhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhc--CCcHHHHH
Q 015068 277 RKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKA--GRRLLLLI 351 (413)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~~ 351 (413)
+++..+...+.. +........+..+.|.++++ .|.++.+ ......+++.+++.++.+++.||+ +||+.+..
T Consensus 250 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~ 325 (451)
T 1pw4_A 250 PNKLLWYIAIAN----VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 325 (451)
T ss_dssp SCHHHHHHHHHH----HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred cCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 444433333322 22222345667778888877 5887665 666777889999999999999999 99988877
Q ss_pred HhHHHH-HHHHH
Q 015068 352 SSSGMA-ASFFL 362 (413)
Q Consensus 352 ~~~~~~-~~~~~ 362 (413)
+..+.. +++++
T Consensus 326 ~~~~~~~~~~~~ 337 (451)
T 1pw4_A 326 FFMTLVTIATIV 337 (451)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766655 44443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-28 Score=224.76 Aligned_cols=253 Identities=14% Similarity=0.127 Sum_probs=199.0
Q ss_pred HHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 015068 54 VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133 (413)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 133 (413)
..++..+..+++...+.+.+|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 34555566677888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHH
Q 015068 134 FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLP 209 (413)
Q Consensus 134 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~ 209 (413)
+++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+ +||+.|++.++.
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999877 899999988877
Q ss_pred HHHHHh-hhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHH
Q 015068 210 CTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (413)
Q Consensus 210 ~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (413)
.++..+ ..+.+||+++... ++++.+.++++.++++..+...+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPVDA-----------------------------------PRTRLLTSYKTLFGNSGFNCYLLML 208 (375)
T ss_dssp HHHHHCCCCCSSCCCSTTTC-----------------------------------CCCCTTTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccCCCCc-----------------------------------ccccHHHHHHHHhcCcchHHHHHHH
Confidence 766665 5566787754100 0011222344555555444444333
Q ss_pred HHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015068 289 GLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGR 345 (413)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~ 345 (413)
.+.... ......+.|.++++ .|.++.+ .......++.+++.++.+++.||.++
T Consensus 209 ~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 209 IGGLAG----IAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp HHHHHH----HHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 23344445555444 4655444 55666678888899999999999887
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-25 Score=208.20 Aligned_cols=138 Identities=16% Similarity=0.213 Sum_probs=127.4
Q ss_pred hccCcchhHHHHHHHHHHHHHHHHhHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhh
Q 015068 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 158 (413)
Q Consensus 80 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 158 (413)
+|.+..+.+++.+++.++..+++++.|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCc--chhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhh
Q 015068 159 VPVYIAEIAPQNM--RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (413)
Q Consensus 159 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~ 217 (413)
..+++.|++|+++ |+.++++++.+..+|..++|.+++.+ +||+.|++.++..++..+..
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 77788889999999999999998876 89999998776655554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-22 Score=187.98 Aligned_cols=267 Identities=13% Similarity=0.047 Sum_probs=156.4
Q ss_pred cccchhhHH-HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHH---HHHHHhcCh-hHH
Q 015068 67 GYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW---LIISFSKDS-SFL 141 (413)
Q Consensus 67 ~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~-~~l 141 (413)
+...+.+|. +++++|.|+.+.|++.+.+.++..++++++|+++||+|||++++.+..+.+++. ....+++.. ..+
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566665 566799999999999999999999999999999999999999998887765532 111222211 123
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCCC--CcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhHHHHHHHHhh
Q 015068 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQ--NMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPG 216 (413)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~~~~~ 216 (413)
...+++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++.+ +||+.|++.++..++..+.
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~ 183 (417)
T 2cfq_A 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 4456666665555444444444444432 3456666666666677777888777665 7999998877665555444
Q ss_pred hccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHh
Q 015068 217 LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQL 296 (413)
Q Consensus 217 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (413)
.++.+|+++. +.+.++ + + .++.++.....++++++++..+...+........
T Consensus 184 ~~~~~~~~~~---~~~~~~-----------~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 235 (417)
T 2cfq_A 184 LFFAKTDAPS---SATVAN-----------A-V-----------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT-- 235 (417)
T ss_dssp SCSSCCCCSC---SSCSSS-----------S-S-----------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH--
T ss_pred HHHcCccccc---cccccc-----------c-c-----------ccccccccHHHHHHHhcCCchhhHHHHHHHHHHH--
Confidence 4444443210 000000 0 0 0000011112344555555444333322211111
Q ss_pred cCchhHHhchHHHHhhc-CC---CCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHH
Q 015068 297 SGINGVLFYSSNIFANA-GI---SSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 363 (413)
Q Consensus 297 ~~~~~~~~~~~~~~~~~-g~---~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 363 (413)
+.....+.|.++.+. +. +... .......++.+++.++.++++||+|||+.+..+..+.+++.+.+
T Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~ 306 (417)
T 2cfq_A 236 --YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS 306 (417)
T ss_dssp --HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 122222344444432 21 1111 33444566778889999999999999999887777766655444
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-20 Score=176.61 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=130.6
Q ss_pred HHHhhhhc------cCcchhHHHHHHHHHHHHHHHHhHHHHHhhh-chhHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHH
Q 015068 74 AEIISDLK------LTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGR 145 (413)
Q Consensus 74 ~~i~~~~~------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r 145 (413)
+.+.+++| .+..+.+++.+++.++..+++++.|+++||+ |||+++..+.++.+++.+++++++ +++.++++|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34677899 9999999999999999999999999999999 999999999999999999999999 999999999
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhH---HHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhh
Q 015068 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV---NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (413)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~ 217 (413)
++.|++.+...+...+++.|++|+++|+++.+. .+....+|..++|.+++.+ +||+.|++.++..++..+..
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876666 8889999999999998766 89999998877666555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-14 Score=130.63 Aligned_cols=153 Identities=12% Similarity=0.146 Sum_probs=128.5
Q ss_pred ccchhhHHHhhh-hccCcchhHHHHHHHHHHHHHHHHhHHHHHhhh--chhHHHHHHHHHHH-HHHHHHHHhc--ChhHH
Q 015068 68 YSSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSLMIAAVPNI-IGWLIISFSK--DSSFL 141 (413)
Q Consensus 68 ~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~~--~~~~l 141 (413)
......|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+.+ +.+.+
T Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (451)
T 1pw4_A 270 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD 349 (451)
T ss_dssp HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 344556666655 899999999999999999999999999999999 99999888877766 6666666653 67778
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHH-HHHHHHHhhccc----chHHHHHhhHHHHHHHHhh
Q 015068 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (413)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~ 216 (413)
.+.-++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+ +|+..|++.++..++..+.
T Consensus 350 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 429 (451)
T 1pw4_A 350 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 429 (451)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 88889999999998988899999999999999999999999999 999999888766 8999998887776666655
Q ss_pred hccc
Q 015068 217 LFFI 220 (413)
Q Consensus 217 ~~~~ 220 (413)
.+++
T Consensus 430 ~~~~ 433 (451)
T 1pw4_A 430 LIVV 433 (451)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.2e-13 Score=123.91 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=116.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHH
Q 015068 83 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVY 162 (413)
Q Consensus 83 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 162 (413)
+....++..++..++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566888888888999999999999999999999999988888888777778888888888888888877777778899
Q ss_pred HHhcCCCCcchhHhhH-HHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhh-hccccCch
Q 015068 163 IAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESP 224 (413)
Q Consensus 163 i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 224 (413)
+.|.+|++.|+++.++ ++....+|..++|.+++.+ +++..|.+.++..++..+. .+..||++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999888 4777888999998888766 6788888777766666554 44456543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-12 Score=119.08 Aligned_cols=146 Identities=13% Similarity=-0.037 Sum_probs=118.1
Q ss_pred hhhHHH-h-hhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHH
Q 015068 71 PTQAEI-I-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (413)
Q Consensus 71 ~~~~~i-~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 148 (413)
...|.+ . +.+|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.++..+.++...++. -++.
T Consensus 279 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 357 (438)
T 3o7q_A 279 SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLC 357 (438)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHH
T ss_pred HHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHH
Confidence 444444 4 446999999999999999999999999999999999999999999999999998888888765544 4888
Q ss_pred hhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c-hHHHHHhhHHHHHHHHhhhcc
Q 015068 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTLLIPGLFF 219 (413)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~-w~~~~~~~~~~~~~~~~~~~~ 219 (413)
|++.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+ | ++..|++.++..++..+..+.
T Consensus 358 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 358 SAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999865 888888776 5568888888888776 6 888887765554444443333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=124.03 Aligned_cols=157 Identities=13% Similarity=0.030 Sum_probs=111.7
Q ss_pred ccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh---c-ChhHHHH
Q 015068 68 YSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---K-DSSFLFM 143 (413)
Q Consensus 68 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~-~~~~l~~ 143 (413)
......+.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. . +....++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 374 (491)
T 4gc0_A 295 VVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 374 (491)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH
Confidence 33445567788888888788888888889999999999999999999999999988888777665542 1 1122222
Q ss_pred HHHHHhh-hhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----------chHHHHHhhHHHHHH
Q 015068 144 GRLLEGF-GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----------NWRVLAVLGVLPCTL 212 (413)
Q Consensus 144 ~r~l~G~-~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----------~w~~~~~~~~~~~~~ 212 (413)
.-++... ......+....+.+|.+|.+.|+++.++......+|..+++.+...+ ++.+.|++.+.++++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~ 454 (491)
T 4gc0_A 375 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 454 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 2222222 22234466778999999999999999999888888888776654332 344567766666666
Q ss_pred HHh-hhccccCch
Q 015068 213 LIP-GLFFIPESP 224 (413)
Q Consensus 213 ~~~-~~~~~~e~~ 224 (413)
..+ .++++||+.
T Consensus 455 ~~i~~~~~~PETk 467 (491)
T 4gc0_A 455 AALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHCCCCT
T ss_pred HHHHHHheecCCC
Confidence 555 456789984
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-12 Score=121.00 Aligned_cols=147 Identities=16% Similarity=0.034 Sum_probs=117.5
Q ss_pred hhhHHH-hhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHH-----HHHHHHHHHHHHHHHhc--------
Q 015068 71 PTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM-----IAAVPNIIGWLIISFSK-------- 136 (413)
Q Consensus 71 ~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~-------- 136 (413)
..+|.+ .+.++.+..+.++..+...++..++.++.|++.||+|||+... .+.++.+++.++.....
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
T 4aps_A 304 VVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGK 383 (491)
T ss_dssp THHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTT
T ss_pred HHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 344444 4446777677888889999999999999999999999986655 67777777776666543
Q ss_pred -ChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhHHHHHH
Q 015068 137 -DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTL 212 (413)
Q Consensus 137 -~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~ 212 (413)
+.+.+.+.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+ ++.+.|.+.+...++
T Consensus 384 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (491)
T 4aps_A 384 VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVV 463 (491)
T ss_dssp CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6777888899999999999999999999999999999999999999999999999998877 566777776666555
Q ss_pred HHhhh
Q 015068 213 LIPGL 217 (413)
Q Consensus 213 ~~~~~ 217 (413)
..+..
T Consensus 464 ~~~~~ 468 (491)
T 4aps_A 464 LGIVL 468 (491)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-10 Score=106.15 Aligned_cols=133 Identities=18% Similarity=0.106 Sum_probs=102.0
Q ss_pred hhhHHH-hhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHH-HHHHHH--HHHH--hcChhHHHHH
Q 015068 71 PTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP-NIIGWL--IISF--SKDSSFLFMG 144 (413)
Q Consensus 71 ~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~--~~~~--~~~~~~l~~~ 144 (413)
...|.+ ++++|.++.+.+++.+...++..++.++.+++.||+|+|.. .+..+ ...+.. .... .++.+.+.+.
T Consensus 220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (375)
T 2gfp_A 220 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPDWFGVMNVWTLLVP 297 (375)
T ss_dssp HHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccccHHHHHHH
Confidence 334444 44489999999999999999999999999999999998332 22222 222222 2222 2367777788
Q ss_pred HHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhh
Q 015068 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLG 206 (413)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~ 206 (413)
-++.|++.+...+...+++.|..| ++|+++.++.+....+|..+++.+.+.+ +|+..+++.
T Consensus 298 ~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 298 AALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 999999999999999999999998 8999999999999999999888888776 455555543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.9e-09 Score=99.10 Aligned_cols=134 Identities=18% Similarity=0.149 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHH----hhhch----hHHHHHHHHHHHHHHHHHHHh---------cChhHHHHHHHHH
Q 015068 86 EFSIFGSLANVGAMVGAIASGQIA----EYIGR----KGSLMIAAVPNIIGWLIISFS---------KDSSFLFMGRLLE 148 (413)
Q Consensus 86 ~~~~~~s~~~~~~~~~~~~~g~l~----dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~ 148 (413)
..+++.+...++..++.++.+++. ||.|+ ++.+..+.++.+++.++.++. .+.+.+++.-++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666666666677777666654 55543 356677888888887777664 3667788889999
Q ss_pred hhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc------ch---------HHHHHhhHHHHHHH
Q 015068 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NW---------RVLAVLGVLPCTLL 213 (413)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------~w---------~~~~~~~~~~~~~~ 213 (413)
|++.+...+....++.|..|+++|++++++.+....+|..+++.+.+.+ +| +..|++.+...++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988766 24 33355555555555
Q ss_pred Hhhhcc
Q 015068 214 IPGLFF 219 (413)
Q Consensus 214 ~~~~~~ 219 (413)
.+..++
T Consensus 496 ~~~~~~ 501 (524)
T 2xut_A 496 AIVFAL 501 (524)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 444333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 413 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 6e-07 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 48.9 bits (115), Expect = 6e-07
Identities = 41/342 (11%), Positives = 95/342 (27%), Gaps = 24/342 (7%)
Query: 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK----GSLMIAAVPNIIGWLI 131
+ + + + S ++ G +++ + L++AA + +
Sbjct: 50 YLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV 109
Query: 132 ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY 191
+ + +F+ L G+ G+ + Q RG + SV + +G +
Sbjct: 110 PWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPP 169
Query: 192 LLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDIS 251
LL L + + L M D S + +
Sbjct: 170 LLFLL-------GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND 222
Query: 252 IEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA 311
+ +++ + + L K W+ + + + +L+ GI
Sbjct: 223 YPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY--GILDWSPTYLKEVK 280
Query: 312 NAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEG 371
+ + S+ A F + T + W+ DK R M V +
Sbjct: 281 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW---- 336
Query: 372 FVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEV 413
+ + V+ G + + E+
Sbjct: 337 -------MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALEL 371
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 413 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.84 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.58 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.44 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.2e-30 Score=239.00 Aligned_cols=291 Identities=13% Similarity=0.060 Sum_probs=204.2
Q ss_pred hhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHH
Q 015068 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (413)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 126 (413)
.+|.+...++++.+..+++...++.+.|.++ |+|+|.+|.|++.+++.+++.++++++|+++||+|||+++..+.++.+
T Consensus 22 ~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~ 100 (447)
T d1pw4a_ 22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 100 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 3456666667777777777777788888775 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----cChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----
Q 015068 127 IGWLIISFS----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----- 197 (413)
Q Consensus 127 ~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----- 197 (413)
++.++++++ ++++.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++.++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 180 (447)
T d1pw4a_ 101 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 180 (447)
T ss_dssp HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred HHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh
Confidence 999988876 48899999999999999999999999999999999999999999999999999888776554
Q ss_pred chHHHHHhhHHHHHHHHhh-hccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHh
Q 015068 198 NWRVLAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELK 276 (413)
Q Consensus 198 ~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (413)
+||+.|++.++..++..+. .++.+|+|+.......++.. ....++.++..+++....+...+..+
T Consensus 181 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (447)
T d1pw4a_ 181 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK--------------NDYPDDYNEKAEQELTAKQIFMQYVL 246 (447)
T ss_dssp CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC--------------CC-------------CCTHHHHHHTS
T ss_pred cccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh--------------hhcccchhhccccccchhhHHHHHHH
Confidence 8999998877766655544 44456655422111111100 00000011111111122222333444
Q ss_pred hhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhhc-CCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHh
Q 015068 277 RKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISS 353 (413)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~ 353 (413)
+++..+.... ..+...........+.+.++++. +.+..+ .......+..+++.++.+++.||++|++......
T Consensus 247 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 322 (447)
T d1pw4a_ 247 PNKLLWYIAI----ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 322 (447)
T ss_dssp SCHHHHHHHH----HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred cCchHHHHHH----Hhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccc
Confidence 4433332222 22222223445566667776654 665554 6666778889999999999999999876554444
Q ss_pred HHH
Q 015068 354 SGM 356 (413)
Q Consensus 354 ~~~ 356 (413)
...
T Consensus 323 ~~~ 325 (447)
T d1pw4a_ 323 FFM 325 (447)
T ss_dssp HHH
T ss_pred hhH
Confidence 433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=2.3e-21 Score=176.42 Aligned_cols=270 Identities=12% Similarity=0.038 Sum_probs=164.5
Q ss_pred ccccccchhhHH-HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhH--
Q 015068 64 FTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF-- 140 (413)
Q Consensus 64 ~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-- 140 (413)
+..+...|.+|. +++++|+|++++|++.+++.++..+++++.|+++||+|||++++.+..+..++..+..+..+...
T Consensus 21 ~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T d1pv7a_ 21 FIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ 100 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 444556677776 67789999999999999999999999999999999999999999999999998888887765443
Q ss_pred --HHHHHHHHhhhhhhhhhhHHHHHHhcCCC--CcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhHH-HHHH
Q 015068 141 --LFMGRLLEGFGVGVISYTVPVYIAEIAPQ--NMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVL-PCTL 212 (413)
Q Consensus 141 --l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~-~~~~ 212 (413)
.++.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++.+ +|+..+..... ..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 180 (417)
T d1pv7a_ 101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALIL 180 (417)
T ss_dssp TTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHH
Confidence 34455555555555555544444443332 2344556666777777788888877766 55555555444 4444
Q ss_pred HHhhhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHH
Q 015068 213 LIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLV 292 (413)
Q Consensus 213 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (413)
..+..+..+|+++.. .+.+ ++.++.+........+..+.+..+..........
T Consensus 181 ~~~~~~~~~~~~~~~---~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (417)
T d1pv7a_ 181 AVLLFFAKTDAPSSA---TVAN------------------------AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVS 233 (417)
T ss_dssp HHHHHSSCCCSCSSS---CSSH------------------------HHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccch---hhhh------------------------hhhhhcccccccccccccccccccchhhhhHHHH
Confidence 445556666654310 0000 0011111112222233333333333332222222
Q ss_pred HHHhcCchhHHhchHHHHhhcCCC----Cch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Q 015068 293 LQQLSGINGVLFYSSNIFANAGIS----SSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~g~~----~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 364 (413)
... ................+ ... .......++..++....+++.||.++|+.+..+..+.+++.+.+.
T Consensus 234 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~ 307 (417)
T d1pv7a_ 234 CTY----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS 307 (417)
T ss_dssp HHH----HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccc
Confidence 211 11112222222211111 111 344555677888899999999999999999988888877776665
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=5.3e-15 Score=133.61 Aligned_cols=146 Identities=12% Similarity=0.065 Sum_probs=125.1
Q ss_pred hhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhh
Q 015068 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVIS 156 (413)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 156 (413)
.++.+.+....+...+...++..++..+.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|++.+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 330 (417)
T d1pv7a_ 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHH
Confidence 34445566778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCcchhHhhHH-HHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhh-hccccC
Q 015068 157 YTVPVYIAEIAPQNMRGSLGSVN-QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPE 222 (413)
Q Consensus 157 ~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~-~~~~~e 222 (413)
+...+++.|.+|+++|++..++. +....+|..++|.+++.+ ||+..|++.++..++..+. .+.+++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999975 556778888888888776 8999998877766655544 344443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=9.9e-13 Score=120.14 Aligned_cols=144 Identities=12% Similarity=0.075 Sum_probs=109.3
Q ss_pred HHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH---H--hcChhHHHHHHHHHh
Q 015068 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---F--SKDSSFLFMGRLLEG 149 (413)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~--~~~~~~l~~~r~l~G 149 (413)
.+.+.++.+..+.++..+...++..++.++.|++.||++||+..........+...... . ..+.+...++-++.|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 354 (447)
T d1pw4a_ 275 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 354 (447)
T ss_dssp HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred hcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999987544443333322222222 1 346777778888899
Q ss_pred hhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHH-HHHHHHHhhccc----chHHHHHhhHHHHHHHHhhhc
Q 015068 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (413)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~ 218 (413)
++.+...+....+..|.+|+++|+++.++.+....+ |.+++|.+.+.+ ||+..|++.+...++..++..
T Consensus 355 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 998888889999999999999999999998776665 566677776654 899888877666555554433
|