Citrus Sinensis ID: 015080
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 413 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SA77 | 419 | UDP-arabinose 4-epimerase | yes | no | 0.990 | 0.976 | 0.848 | 0.0 | |
| Q9SUN3 | 411 | Probable UDP-arabinose 4- | no | no | 0.992 | 0.997 | 0.832 | 0.0 | |
| O64749 | 417 | Putative UDP-arabinose 4- | no | no | 0.992 | 0.983 | 0.834 | 0.0 | |
| Q8H0B2 | 406 | Probable UDP-arabinose 4- | yes | no | 0.978 | 0.995 | 0.786 | 0.0 | |
| Q8H0B6 | 391 | Probable UDP-arabinose 4- | no | no | 0.944 | 0.997 | 0.810 | 0.0 | |
| Q8H930 | 421 | Probable UDP-arabinose 4- | no | no | 0.990 | 0.971 | 0.784 | 0.0 | |
| Q9FI17 | 436 | Putative UDP-arabinose 4- | no | no | 0.995 | 0.942 | 0.758 | 0.0 | |
| P55180 | 339 | UDP-glucose 4-epimerase O | yes | no | 0.801 | 0.976 | 0.431 | 2e-71 | |
| Q9SN58 | 351 | UDP-glucose 4-epimerase 2 | no | no | 0.803 | 0.945 | 0.425 | 9e-71 | |
| O65781 | 350 | UDP-glucose 4-epimerase G | N/A | no | 0.803 | 0.948 | 0.424 | 4e-68 |
| >sp|Q9SA77|ARAE1_ARATH UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/409 (84%), Positives = 376/409 (91%)
Query: 1 MLNFGRARTQQRQTRPTSFGGLDYADPKRKSNFAGKFILAAALTALCIFLLKQSPTFSSP 60
M +FGRAR+Q RQ R S GGLDYADPK+K+N+ GK +L A+LTALCIF+LKQSPTF++P
Sbjct: 1 MFSFGRARSQGRQNRSMSLGGLDYADPKKKNNYLGKILLTASLTALCIFMLKQSPTFNTP 60
Query: 61 SPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE 120
S FS+HE GVTHVLVTGGAGYIGSHAALRLLK+SYRVTIVDNLSRGN+ AV++LQELFPE
Sbjct: 61 SVFSRHEPGVTHVLVTGGAGYIGSHAALRLLKESYRVTIVDNLSRGNLAAVRILQELFPE 120
Query: 121 PGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVL 180
PGRLQFIYADLGDAKAVNK F+ENAFDAVMHFAAVAYVGEST PLKYYHNITSNTLVVL
Sbjct: 121 PGRLQFIYADLGDAKAVNKIFTENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVL 180
Query: 181 ESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDM 240
E+MA HGV TLIYSSTCATYGEP+ MPITEETPQ PINPYGKAKKMAEDIILDFSKNSDM
Sbjct: 181 ETMAAHGVKTLIYSSTCATYGEPDIMPITEETPQVPINPYGKAKKMAEDIILDFSKNSDM 240
Query: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300
AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGI+ GL++KGTDY TADG
Sbjct: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIMPGLQIKGTDYKTADG 300
Query: 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY 360
TCVRDYIDV DLVDAHVKAL++A+P+KVGIYNVGTGKG SVKEFVEACKKAT IK+ Y
Sbjct: 301 TCVRDYIDVTDLVDAHVKALQKAKPRKVGIYNVGTGKGSSVKEFVEACKKATGVEIKIDY 360
Query: 361 EPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
PRR GDYAEVYSDP+KIR ELNWTAK+TNL+ESLE AWRWQK HR GY
Sbjct: 361 LPRRAGDYAEVYSDPSKIRKELNWTAKHTNLKESLETAWRWQKLHRNGY 409
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Acts as a UDP-D-xylose 4-epimerase but lacks both UDP-D-glucose and UDP-D-glucuronic acid 4-epimerase activities in vitro. Arabidopsis thaliana (taxid: 3702) EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 5 |
| >sp|Q9SUN3|ARAE3_ARATH Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g20460 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/411 (83%), Positives = 374/411 (90%), Gaps = 1/411 (0%)
Query: 1 MLNFGRARTQQRQTRPTSFGGLDYADPKRKSNFAGKFILAAALTALCIFLLKQSPTFSSP 60
ML+F RAR+Q R TRP GG++Y +PKRKSN GK IL +LTALCIF+LK +P+F+SP
Sbjct: 1 MLSFSRARSQGRNTRPLG-GGMEYLEPKRKSNVMGKIILVVSLTALCIFMLKHAPSFTSP 59
Query: 61 SPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE 120
+ FS+ EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN+GAVKVLQ LFPE
Sbjct: 60 TAFSRSEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNLGAVKVLQGLFPE 119
Query: 121 PGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVL 180
PGRLQFIYADLGDAKAV+K FSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVL
Sbjct: 120 PGRLQFIYADLGDAKAVDKIFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVL 179
Query: 181 ESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDM 240
E++ARH V LIYSSTCATYGEP+KMPI E TPQ PINPYGKAKKMAED+ILDFSKNSDM
Sbjct: 180 EAVARHKVKKLIYSSTCATYGEPDKMPIVEVTPQVPINPYGKAKKMAEDMILDFSKNSDM 239
Query: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300
AVMILRYFNVIGSDPEGRLGEAP+PELREHGRISGACFDAARG+I GL+VKGTDY T DG
Sbjct: 240 AVMILRYFNVIGSDPEGRLGEAPKPELREHGRISGACFDAARGVIPGLQVKGTDYKTGDG 299
Query: 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY 360
TCVRDYIDV DLVDAHVKALE+A+P+ VGIYNVGTGKGRSVKEFVEACKKAT +IKV +
Sbjct: 300 TCVRDYIDVTDLVDAHVKALEKAKPRNVGIYNVGTGKGRSVKEFVEACKKATGVDIKVDF 359
Query: 361 EPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
PRRPGDYAEVYSDP KI +LNW+A+YTNLQESLE+AW+WQK+H GYAS
Sbjct: 360 LPRRPGDYAEVYSDPAKILRDLNWSARYTNLQESLEVAWKWQKTHPHGYAS 410
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Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 5 |
| >sp|O64749|ARAE2_ARATH Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsis thaliana GN=At2g34850 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/411 (83%), Positives = 368/411 (89%), Gaps = 1/411 (0%)
Query: 1 MLNFGRARTQQRQTRPTSFGGLDYADPKRKSNFAGKFILAAALTALCIFLLKQSPTFSSP 60
MLN GRART RQ R SF GLD+ADPK+ +N+ GK +L LTA+CI LL QSPTF++P
Sbjct: 1 MLNLGRARTG-RQNRSMSFEGLDFADPKKNNNYMGKIVLVMTLTAMCILLLNQSPTFNTP 59
Query: 61 SPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE 120
S FS+ E GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN+GAVK+LQ+LFPE
Sbjct: 60 SVFSRSEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNLGAVKILQQLFPE 119
Query: 121 PGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVL 180
PG+LQFIYADLGDA AVNK FSENAFDAVMHFAAVAYVGEST PLKYYHNITSNTLVVL
Sbjct: 120 PGKLQFIYADLGDANAVNKIFSENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVL 179
Query: 181 ESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDM 240
E+MA HGV TLIYSSTCATYGEPEKMPITEETPQ PINPYGKAKKMAEDIILDFSKNS M
Sbjct: 180 ETMAAHGVKTLIYSSTCATYGEPEKMPITEETPQVPINPYGKAKKMAEDIILDFSKNSIM 239
Query: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300
AVMILRYFNVIGSDPEGRLGEAPRPEL EHGRISGACFDAARGII GL++KGTDY T DG
Sbjct: 240 AVMILRYFNVIGSDPEGRLGEAPRPELSEHGRISGACFDAARGIIPGLQIKGTDYKTVDG 299
Query: 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY 360
TCVRDYIDV DLVDAHVKALE+A+P+KVGI+NVGTGKG SVKEFVEACKKAT +IKV Y
Sbjct: 300 TCVRDYIDVTDLVDAHVKALEKAKPRKVGIFNVGTGKGSSVKEFVEACKKATGVDIKVDY 359
Query: 361 EPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
RR GDYAEVYSDP KI+ ELNWTAK+TNLQESL++AWRWQK HR GY S
Sbjct: 360 LERRAGDYAEVYSDPRKIKEELNWTAKHTNLQESLKMAWRWQKLHRSGYGS 410
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Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 5 |
| >sp|Q8H0B2|ARAE3_ORYSJ Probable UDP-arabinose 4-epimerase 3 OS=Oryza sativa subsp. japonica GN=UEL-3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/412 (78%), Positives = 353/412 (85%), Gaps = 8/412 (1%)
Query: 1 MLNFGRARTQQRQTRPTSFGGLDYADPKRKSNFAGKFILAAALTALCIFLLKQSPTFSSP 60
M+ R +Q R GG++Y D +RK + GK I A LT LCIF+LKQSP F
Sbjct: 1 MIPLNRRASQTR-------GGMEYFDARRKPHNVGKVIAALVLTTLCIFILKQSPGFGGS 53
Query: 61 SPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE 120
S FS+HE GVTHVLVTGGAGYIGSHA+LRLLKD+YRVTIVDNLSRGN+GAVKVLQELFP+
Sbjct: 54 SVFSRHEPGVTHVLVTGGAGYIGSHASLRLLKDNYRVTIVDNLSRGNMGAVKVLQELFPQ 113
Query: 121 PGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVL 180
PGRLQFIYADLGD K VNK F+ENAFDAVMHFAAVAYVGESTL+PL+YYHNITSNTL++L
Sbjct: 114 PGRLQFIYADLGDQKTVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLLIL 173
Query: 181 ESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN-SD 239
E+MA HGV TLIYSSTCATYGEPEKMPI E T Q PINPYGKAKKMAEDIILDF+K D
Sbjct: 174 EAMASHGVKTLIYSSTCATYGEPEKMPIVETTRQLPINPYGKAKKMAEDIILDFTKGRKD 233
Query: 240 MAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTAD 299
MAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAA GII GLKVKGTDY T D
Sbjct: 234 MAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVKGTDYPTTD 293
Query: 300 GTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVI 359
GTC+RDYIDV DLVDAHVKAL +A+P KVGIYNVGTG+GRSVKEFV+ACKKAT NIK+
Sbjct: 294 GTCIRDYIDVTDLVDAHVKALNKAEPSKVGIYNVGTGRGRSVKEFVDACKKATGVNIKIE 353
Query: 360 YEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
Y RRPGDYAEVYSDPTKI ELNWTA+YT+L+ESL +AWRWQKSH GY S
Sbjct: 354 YLSRRPGDYAEVYSDPTKINTELNWTAQYTDLKESLSVAWRWQKSHPRGYGS 405
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Oryza sativa subsp. japonica (taxid: 39947) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 5 |
| >sp|Q8H0B6|ARAE2_ORYSJ Probable UDP-arabinose 4-epimerase 2 OS=Oryza sativa subsp. japonica GN=UEL-2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/390 (81%), Positives = 346/390 (88%)
Query: 22 LDYADPKRKSNFAGKFILAAALTALCIFLLKQSPTFSSPSPFSQHEEGVTHVLVTGGAGY 81
+D+ D +RK N GKF +A ALT +CI +LKQSP F+S S FS+HE GVTHVLVTGGAGY
Sbjct: 1 MDFGDSRRKPNVVGKFTVAVALTVMCIIVLKQSPGFTSTSVFSRHEIGVTHVLVTGGAGY 60
Query: 82 IGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFF 141
IGSHA LRLL+D+YRVTIVDNLSRGN+GAV+VLQ LFPEPGRLQFIYADLGDAKAVNK F
Sbjct: 61 IGSHATLRLLRDNYRVTIVDNLSRGNMGAVRVLQRLFPEPGRLQFIYADLGDAKAVNKIF 120
Query: 142 SENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYG 201
SENAFDAVMHFAAVAYVGESTL+PL+YYHNITSNTL VLE+MA + V TLIYSSTCATYG
Sbjct: 121 SENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLTVLEAMAAYNVKTLIYSSTCATYG 180
Query: 202 EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGE 261
EP+ MPITE TPQ PINPYGKAKKMAEDIILDFSK S+MAVMILRYFNVIGSDP GRLGE
Sbjct: 181 EPDTMPITEATPQNPINPYGKAKKMAEDIILDFSKRSEMAVMILRYFNVIGSDPGGRLGE 240
Query: 262 APRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALE 321
APRPELREHGRISGACFDAA GII GLKV+GTDY TADGTC+RDYIDV DLVDAHVKAL+
Sbjct: 241 APRPELREHGRISGACFDAALGIIPGLKVRGTDYPTADGTCIRDYIDVTDLVDAHVKALD 300
Query: 322 RAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLE 381
+AQP KVGIYNVGTG GRSVKEFVEACK AT A+IKV + RRPGDYAEVYSDP+KI E
Sbjct: 301 KAQPGKVGIYNVGTGHGRSVKEFVEACKSATGASIKVSFLTRRPGDYAEVYSDPSKIHDE 360
Query: 382 LNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
LNWTA+Y +L+ESL AW+WQK+H GY S
Sbjct: 361 LNWTARYIDLRESLSTAWKWQKAHPNGYGS 390
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Oryza sativa subsp. japonica (taxid: 39947) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 5 |
| >sp|Q8H930|ARAE1_ORYSJ Probable UDP-arabinose 4-epimerase 1 OS=Oryza sativa subsp. japonica GN=UEL-1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/413 (78%), Positives = 352/413 (85%), Gaps = 4/413 (0%)
Query: 1 MLNFGRARTQQRQTRPTSF-GGLDYADPKRKSNFAGKFILAAALTALCIFLLKQSPTFS- 58
ML R R QQR R F +D++DPKRK + K ++ A LTA+C+ +L Q P
Sbjct: 1 MLPTNRNRPQQRPARSWYFISDMDFSDPKRKPRYLSKILMVALLTAMCVVMLTQPPCHRR 60
Query: 59 SPSPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELF 118
+PS FS HE GVTHVLVTGGAGYIGSHAALRLLKDS+RVTIVDNLSRGN+GA+KVLQ LF
Sbjct: 61 TPSVFSIHEPGVTHVLVTGGAGYIGSHAALRLLKDSFRVTIVDNLSRGNMGAIKVLQNLF 120
Query: 119 PEPGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLV 178
EPGRLQFIYADLGD KAVN+ F+ENAFDAVMHFAAVAYVGESTL+PL+YYHNITSNTLV
Sbjct: 121 SEPGRLQFIYADLGDPKAVNRIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLV 180
Query: 179 VLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN- 237
VLE+MA H V TLIYSSTCATYGEPEKMPITE TPQ PINPYGKAKKMAEDIILDFSK+
Sbjct: 181 VLEAMAAHNVRTLIYSSTCATYGEPEKMPITEGTPQFPINPYGKAKKMAEDIILDFSKSK 240
Query: 238 -SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYS 296
+DMAVMILRYFNVIGSDPEGRLGEAP+PELREHGRISGACFDAA GII GLKVKGTDY
Sbjct: 241 KADMAVMILRYFNVIGSDPEGRLGEAPKPELREHGRISGACFDAALGIIPGLKVKGTDYE 300
Query: 297 TADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANI 356
T DGTCVRDYIDV DLVDAHVKAL +A+ KVGIYNVGTGKGRSVKEFVEACKKAT +I
Sbjct: 301 TPDGTCVRDYIDVTDLVDAHVKALNKAERGKVGIYNVGTGKGRSVKEFVEACKKATGVDI 360
Query: 357 KVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
KV Y PRRPGDYAEVYSDP KI ELNWTA++T+L ESL +AW WQK HR GY
Sbjct: 361 KVDYFPRRPGDYAEVYSDPAKINSELNWTAQHTDLLESLRVAWTWQKKHRSGY 413
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Oryza sativa subsp. japonica (taxid: 39947) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 5 |
| >sp|Q9FI17|ARAE4_ARATH Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsis thaliana GN=At5g44480 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/435 (75%), Positives = 359/435 (82%), Gaps = 24/435 (5%)
Query: 1 MLNFGRARTQQRQTRPTSFGG------------------------LDYADPKRKSNFAGK 36
MLN RTQ+R RP S GG +D +PK K+N GK
Sbjct: 1 MLNSSGVRTQRRSPRPLSLGGRKIITPTKFAYDHHNPDKVLDFVEMDCLEPKTKNNLTGK 60
Query: 37 FILAAALTALCIFLLKQSPTFSSPSPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYR 96
+L A+L L I ++ QS +F+SPS FSQ EEGVTHVLVTGGAGYIGSHAALRLL+DSYR
Sbjct: 61 LLLVASLLILAIIVISQSSSFTSPSAFSQREEGVTHVLVTGGAGYIGSHAALRLLRDSYR 120
Query: 97 VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVA 156
VTIVDNLSRGN+GAVK LQ+LFP+ GRLQFIYADLGD AV K FSENAFDAVMHFAAVA
Sbjct: 121 VTIVDNLSRGNLGAVKTLQQLFPQTGRLQFIYADLGDPLAVEKIFSENAFDAVMHFAAVA 180
Query: 157 YVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216
YVGESTL PLKYYHNITSNTL VLE+MARH V LIYSSTCATYGEPEKMPITE+TPQ P
Sbjct: 181 YVGESTLYPLKYYHNITSNTLGVLEAMARHKVKKLIYSSTCATYGEPEKMPITEDTPQVP 240
Query: 217 INPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGA 276
INPYGKAKKMAED+ILDFSKNSDMAVMILRYFNVIGSDP GRLGEAPRPELRE GRISGA
Sbjct: 241 INPYGKAKKMAEDMILDFSKNSDMAVMILRYFNVIGSDPGGRLGEAPRPELREQGRISGA 300
Query: 277 CFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTG 336
CFDAARG I GL+VKGTDY T+DGTC+RDYIDV DLVDAHVKALE+AQP+KVGIYNVGTG
Sbjct: 301 CFDAARGFIPGLQVKGTDYKTSDGTCIRDYIDVTDLVDAHVKALEKAQPRKVGIYNVGTG 360
Query: 337 KGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLE 396
KGRSVKEFVEACKKAT IKV + PRRPGDYAEVYSDPTKI +LNWTA++TNLQ+SL+
Sbjct: 361 KGRSVKEFVEACKKATGVEIKVDFLPRRPGDYAEVYSDPTKILKDLNWTARFTNLQDSLQ 420
Query: 397 IAWRWQKSHRGGYAS 411
+AWRWQK H GY S
Sbjct: 421 VAWRWQKIHPHGYNS 435
|
Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 5 |
| >sp|P55180|GALE_BACSU UDP-glucose 4-epimerase OS=Bacillus subtilis (strain 168) GN=galE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/343 (43%), Positives = 202/343 (58%), Gaps = 12/343 (3%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+LVTGGAGYIGSH + LL Y + ++DNLS + A+ ++E+ + L F ADL
Sbjct: 3 ILVTGGAGYIGSHTCVELLNSGYEIVVLDNLSNSSAEALNRVKEITGK--DLTFYEADLL 60
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D +AV+ F+EN +AV+HFA + VGES PLKYYHN + T ++ E+M ++GV ++
Sbjct: 61 DREAVDSVFAENEIEAVIHFAGLKAVGESVAIPLKYYHNNLTGTFILCEAMEKYGVKKIV 120
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDF-SKNSDMAVMILRYFNVI 251
+SS+ YG PE PITE+ P NPYG+ K M E I+ D + +++ +V +LRYFN
Sbjct: 121 FSSSATVYGVPETSPITEDFPLGATNPYGQTKLMLEQILRDLHTADNEWSVALLRYFNPF 180
Query: 252 GSDPEGRLGEAPR--PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309
G+ P GR+GE P P + A G + L V G DY T DGT VRDYI V
Sbjct: 181 GAHPSGRIGEDPNGIPN-----NLMPYVAQVAVGKLEQLSVFGNDYPTKDGTGVRDYIHV 235
Query: 310 NDLVDAHVKALERA-QPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDY 368
DL + HVKALE+ YN+GTG G SV E V+A +K + + + RRPGD
Sbjct: 236 VDLAEGHVKALEKVLNSTGADAYNLGTGTGYSVLEMVKAFEKVSGKEVPYRFADRRPGDI 295
Query: 369 AEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
A ++DP K + EL W AK L+E +WRWQ S+ GY S
Sbjct: 296 ATCFADPAKAKRELGWEAK-RGLEEMCADSWRWQSSNVNGYKS 337
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|Q9SN58|GALE2_ARATH UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana GN=At4g10960 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 148/348 (42%), Positives = 205/348 (58%), Gaps = 16/348 (4%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG-RLQFIYAD 130
+VLV+GGAGYIGSH L+LL Y V +VDNL + +++ +++L E G RL F D
Sbjct: 5 NVLVSGGAGYIGSHTVLQLLLGGYSVVVVDNLDNSSAVSLQRVKKLAAEHGERLSFHQVD 64
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
L D A+ K FSE FDAV+HFA + VGES PL YY+N T+ +LE MA+HG
Sbjct: 65 LRDRSALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNLVGTITLLEVMAQHGCKN 124
Query: 191 LIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILD-FSKNSDMAVMILRYFN 249
L++SS+ YG P+++P TEE P + +NPYG+ K E+I D + + + +++LRYFN
Sbjct: 125 LVFSSSATVYGSPKEVPCTEEFPISALNPYGRTKLFIEEICRDVYGSDPEWKIILLRYFN 184
Query: 250 VIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG----LKVKGTDYSTADGTCVRD 305
+G+ P G +GE PR I + + G L V G DY+T DGT VRD
Sbjct: 185 PVGAHPSGDIGEDPRG-------IPNNLMPFVQQVAVGRRPHLTVFGNDYNTKDGTGVRD 237
Query: 306 YIDVNDLVDAHVKALERAQPKKVG--IYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR 363
YI V DL D H+ AL + + K+G +YN+GTG G SV E V+A +KA+ I ++ R
Sbjct: 238 YIHVIDLADGHIAALRKLEDCKIGCEVYNLGTGNGTSVLEMVDAFEKASGKKIPLVIAGR 297
Query: 364 RPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
RPGD VY+ + ELNW AKY ++E W W ++ GY S
Sbjct: 298 RPGDAEVVYASTERAESELNWKAKY-GIEEMCRDLWNWASNNPYGYDS 344
|
Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|O65781|GALE2_CYATE UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (660), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 146/344 (42%), Positives = 196/344 (56%), Gaps = 12/344 (3%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE-PGRLQFIYADL 131
VLVTGGAGYIGSH L+LL ++ +VDNL + A+ ++EL + G L F DL
Sbjct: 6 VLVTGGAGYIGSHTVLQLLLGGFKAVVVDNLDNSSETAIHRVKELAGKFAGNLSFHKLDL 65
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
D A+ K FS FD+V+HFA + VGES PL YY N T+V+ E MA HG L
Sbjct: 66 RDRDALEKIFSSTKFDSVIHFAGLKAVGESVQKPLLYYDNNLIGTIVLFEVMAAHGCKKL 125
Query: 192 IYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILD-FSKNSDMAVMILRYFNV 250
++SS+ YG P+++P TEE P + NPYG+ K + E+I D + + +++LRYFN
Sbjct: 126 VFSSSATVYGLPKEVPCTEEFPLSAANPYGRTKLIIEEICRDIYRAEQEWKIILLRYFNP 185
Query: 251 IGSDPEGRLGEAPR--PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308
+G+ P G +GE PR P + A G L V G DY+T+DGT VRDYI
Sbjct: 186 VGAHPSGYIGEDPRGIPN-----NLMPFVQQVAVGRRPALTVFGNDYTTSDGTGVRDYIH 240
Query: 309 VNDLVDAHVKALERAQPKKVG--IYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPG 366
V DL D H+ AL + K+G +YN+GTGKG SV E V+A ++A+ I ++ RRPG
Sbjct: 241 VVDLADGHIAALRKLNDPKIGCEVYNLGTGKGTSVLEMVKAFEQASGKKIPLVMAGRRPG 300
Query: 367 DYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYA 410
D VY+ K ELNW AKY + E W W + GY
Sbjct: 301 DAEVVYASTNKAERELNWKAKY-GIDEMCRDQWNWASKNPYGYG 343
|
Cyamopsis tetragonoloba (taxid: 3832) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 413 | ||||||
| 255578061 | 417 | UDP-glucose 4-epimerase, putative [Ricin | 0.995 | 0.985 | 0.866 | 0.0 | |
| 297846004 | 418 | hypothetical protein ARALYDRAFT_890616 [ | 0.992 | 0.980 | 0.851 | 0.0 | |
| 449435556 | 417 | PREDICTED: UDP-arabinose 4-epimerase 1-l | 0.995 | 0.985 | 0.854 | 0.0 | |
| 22329866 | 419 | UDP-arabinose 4-epimerase [Arabidopsis t | 0.990 | 0.976 | 0.848 | 0.0 | |
| 225444161 | 418 | PREDICTED: UDP-arabinose 4-epimerase 1 [ | 0.995 | 0.983 | 0.846 | 0.0 | |
| 24417398 | 419 | unknown [Arabidopsis thaliana] | 0.990 | 0.976 | 0.845 | 0.0 | |
| 224117864 | 417 | predicted protein [Populus trichocarpa] | 0.995 | 0.985 | 0.846 | 0.0 | |
| 145324086 | 418 | UDP-arabinose 4-epimerase [Arabidopsis t | 0.987 | 0.976 | 0.848 | 0.0 | |
| 211906524 | 413 | UDP-D-xylose 4-epimerase [Gossypium hirs | 0.995 | 0.995 | 0.834 | 0.0 | |
| 356512628 | 416 | PREDICTED: UDP-arabinose 4-epimerase 1-l | 0.992 | 0.985 | 0.834 | 0.0 |
| >gi|255578061|ref|XP_002529901.1| UDP-glucose 4-epimerase, putative [Ricinus communis] gi|223530628|gb|EEF32504.1| UDP-glucose 4-epimerase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/411 (86%), Positives = 378/411 (91%)
Query: 1 MLNFGRARTQQRQTRPTSFGGLDYADPKRKSNFAGKFILAAALTALCIFLLKQSPTFSSP 60
MLNFGRAR QQR R GLDYADPKRKSN GK ILAAALTALCI +LKQSPTF++P
Sbjct: 1 MLNFGRARNQQRTNRSMPLAGLDYADPKRKSNVVGKIILAAALTALCIIMLKQSPTFNTP 60
Query: 61 SPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE 120
SPFS HE+GV HVLVTGGAGYIGSHA+LRLLKD YRVTIVDNLSRGN+GAVKVLQELFPE
Sbjct: 61 SPFSLHEDGVVHVLVTGGAGYIGSHASLRLLKDGYRVTIVDNLSRGNLGAVKVLQELFPE 120
Query: 121 PGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVL 180
PGRLQFIYADLG++K+VNK FSENAFDAVMHFAAVAYVGEST+DPLKYYHNITSNTLVVL
Sbjct: 121 PGRLQFIYADLGNSKSVNKIFSENAFDAVMHFAAVAYVGESTMDPLKYYHNITSNTLVVL 180
Query: 181 ESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDM 240
ESMA H V TLIYSSTCATYGEPEKMPITE+T Q PINPYGKAKKMAEDIILDFSKNSDM
Sbjct: 181 ESMAAHDVKTLIYSSTCATYGEPEKMPITEDTAQVPINPYGKAKKMAEDIILDFSKNSDM 240
Query: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300
AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII+GLKVKGTDY T DG
Sbjct: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIISGLKVKGTDYKTHDG 300
Query: 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY 360
TC+RDYIDV DLVDAHVKALE+A P KVGIYNVGTGKGRSV EFVEACKKAT +IKV Y
Sbjct: 301 TCIRDYIDVTDLVDAHVKALEKAMPGKVGIYNVGTGKGRSVNEFVEACKKATGVDIKVDY 360
Query: 361 EPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
PRRPGDYAEVYSDPTKIR+ELNWTA++T+LQESL++AWRWQK+HR GY S
Sbjct: 361 LPRRPGDYAEVYSDPTKIRVELNWTAQHTDLQESLQVAWRWQKAHRNGYGS 411
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297846004|ref|XP_002890883.1| hypothetical protein ARALYDRAFT_890616 [Arabidopsis lyrata subsp. lyrata] gi|297336725|gb|EFH67142.1| hypothetical protein ARALYDRAFT_890616 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/410 (85%), Positives = 377/410 (91%)
Query: 1 MLNFGRARTQQRQTRPTSFGGLDYADPKRKSNFAGKFILAAALTALCIFLLKQSPTFSSP 60
M NFGRAR+Q RQ R S GGLDYADPK+K+N+ GK +L A+LTALCIF+LKQSPTF++P
Sbjct: 1 MFNFGRARSQGRQNRSMSLGGLDYADPKKKNNYLGKILLTASLTALCIFMLKQSPTFNTP 60
Query: 61 SPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE 120
S FS+HE GVTHVLVTGGAGYIGSHAALRLLK+SYRVTIVDNLSRGN+GAVK+LQELFPE
Sbjct: 61 SVFSRHEPGVTHVLVTGGAGYIGSHAALRLLKESYRVTIVDNLSRGNLGAVKILQELFPE 120
Query: 121 PGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVL 180
PGRLQFIYADLGDAKAVNK F+ENAFDAVMHFAAVAYVGEST PLKYYHNITSNTLVVL
Sbjct: 121 PGRLQFIYADLGDAKAVNKIFTENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVL 180
Query: 181 ESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDM 240
E+MA HGV TLIYSSTCATYGEP+ MPITEETPQ PINPYGKAKKMAEDIILDFSKNS+M
Sbjct: 181 ETMAAHGVKTLIYSSTCATYGEPDTMPITEETPQVPINPYGKAKKMAEDIILDFSKNSNM 240
Query: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300
AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGI+ GL++KGTDY TADG
Sbjct: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIMPGLQIKGTDYKTADG 300
Query: 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY 360
TCVRDYIDV DLVDAHVKAL++A+P+KVGIYNVGTGKG SVKEFVEACKKAT IK+ Y
Sbjct: 301 TCVRDYIDVTDLVDAHVKALQKAKPRKVGIYNVGTGKGSSVKEFVEACKKATGVEIKIEY 360
Query: 361 EPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYA 410
PRR GDYAEVYSDP+KIR ELNWTAK+TNL+ESLE AWRWQK HR GY
Sbjct: 361 LPRRAGDYAEVYSDPSKIRKELNWTAKHTNLKESLETAWRWQKLHRNGYG 410
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435556|ref|XP_004135561.1| PREDICTED: UDP-arabinose 4-epimerase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/411 (85%), Positives = 377/411 (91%)
Query: 1 MLNFGRARTQQRQTRPTSFGGLDYADPKRKSNFAGKFILAAALTALCIFLLKQSPTFSSP 60
ML+FGR+R Q R R SFGG+DY DPKRK+NF GK ILAA+LTA+CI +LKQSP FS+P
Sbjct: 1 MLSFGRSRNQSRFGRSVSFGGMDYPDPKRKNNFVGKIILAASLTAICIVMLKQSPNFSTP 60
Query: 61 SPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE 120
+PF+ H+ GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN+GAVKVLQELFPE
Sbjct: 61 TPFASHQLGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNLGAVKVLQELFPE 120
Query: 121 PGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVL 180
GRLQFIYADLGDAK+VNK FSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTL VL
Sbjct: 121 YGRLQFIYADLGDAKSVNKIFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLTVL 180
Query: 181 ESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDM 240
ESMA HGV TLIYSSTCATYGEPEKMPITEET QAPINPYGKAKKMAE+IILDFSKNS M
Sbjct: 181 ESMAAHGVKTLIYSSTCATYGEPEKMPITEETSQAPINPYGKAKKMAEEIILDFSKNSKM 240
Query: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300
AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII+GLKVKGTDY T DG
Sbjct: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIISGLKVKGTDYKTHDG 300
Query: 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY 360
TC+RDYIDV DLVDAHVKALE+A P KVGIYNVGTGKGRSVKEFVEACKKAT +IKV Y
Sbjct: 301 TCIRDYIDVTDLVDAHVKALEKAIPGKVGIYNVGTGKGRSVKEFVEACKKATGVDIKVDY 360
Query: 361 EPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
PRRPGDYAEV+S+PTKI+ ELNWTA++T+LQESL +AWRWQKSH GY +
Sbjct: 361 LPRRPGDYAEVFSNPTKIKKELNWTAQHTDLQESLSVAWRWQKSHLNGYGN 411
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22329866|ref|NP_174350.2| UDP-arabinose 4-epimerase [Arabidopsis thaliana] gi|79318985|ref|NP_001031118.1| UDP-arabinose 4-epimerase [Arabidopsis thaliana] gi|75313130|sp|Q9SA77.1|ARAE1_ARATH RecName: Full=UDP-arabinose 4-epimerase 1; AltName: Full=UDP-D-xylose 4-epimerase 1 gi|4587518|gb|AAD25749.1|AC007060_7 Strong similarity to F19I3.8 gi|3033381 putative UDP-galactose-4-epimerase from Arabidopsis thaliana BAC gb|AC004238 and is a member of PF|01370 the NAD dependent epimerase/dehydratase family. EST gb|AA597338 comes from this gene [Arabidopsis thaliana] gi|13272475|gb|AAK17176.1|AF325108_1 unknown protein [Arabidopsis thaliana] gi|18086329|gb|AAL57628.1| At1g30620/T5I8_7 [Arabidopsis thaliana] gi|27363222|gb|AAO11530.1| At1g30620/T5I8_7 [Arabidopsis thaliana] gi|28395529|gb|AAO39213.1| UDP-D-xylose 4-epimerase [Arabidopsis thaliana] gi|222423784|dbj|BAH19858.1| AT1G30620 [Arabidopsis thaliana] gi|332193130|gb|AEE31251.1| UDP-arabinose 4-epimerase [Arabidopsis thaliana] gi|332193131|gb|AEE31252.1| UDP-arabinose 4-epimerase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/409 (84%), Positives = 376/409 (91%)
Query: 1 MLNFGRARTQQRQTRPTSFGGLDYADPKRKSNFAGKFILAAALTALCIFLLKQSPTFSSP 60
M +FGRAR+Q RQ R S GGLDYADPK+K+N+ GK +L A+LTALCIF+LKQSPTF++P
Sbjct: 1 MFSFGRARSQGRQNRSMSLGGLDYADPKKKNNYLGKILLTASLTALCIFMLKQSPTFNTP 60
Query: 61 SPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE 120
S FS+HE GVTHVLVTGGAGYIGSHAALRLLK+SYRVTIVDNLSRGN+ AV++LQELFPE
Sbjct: 61 SVFSRHEPGVTHVLVTGGAGYIGSHAALRLLKESYRVTIVDNLSRGNLAAVRILQELFPE 120
Query: 121 PGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVL 180
PGRLQFIYADLGDAKAVNK F+ENAFDAVMHFAAVAYVGEST PLKYYHNITSNTLVVL
Sbjct: 121 PGRLQFIYADLGDAKAVNKIFTENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVL 180
Query: 181 ESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDM 240
E+MA HGV TLIYSSTCATYGEP+ MPITEETPQ PINPYGKAKKMAEDIILDFSKNSDM
Sbjct: 181 ETMAAHGVKTLIYSSTCATYGEPDIMPITEETPQVPINPYGKAKKMAEDIILDFSKNSDM 240
Query: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300
AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGI+ GL++KGTDY TADG
Sbjct: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIMPGLQIKGTDYKTADG 300
Query: 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY 360
TCVRDYIDV DLVDAHVKAL++A+P+KVGIYNVGTGKG SVKEFVEACKKAT IK+ Y
Sbjct: 301 TCVRDYIDVTDLVDAHVKALQKAKPRKVGIYNVGTGKGSSVKEFVEACKKATGVEIKIDY 360
Query: 361 EPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
PRR GDYAEVYSDP+KIR ELNWTAK+TNL+ESLE AWRWQK HR GY
Sbjct: 361 LPRRAGDYAEVYSDPSKIRKELNWTAKHTNLKESLETAWRWQKLHRNGY 409
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444161|ref|XP_002270765.1| PREDICTED: UDP-arabinose 4-epimerase 1 [Vitis vinifera] gi|297740899|emb|CBI31081.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/411 (84%), Positives = 374/411 (90%)
Query: 1 MLNFGRARTQQRQTRPTSFGGLDYADPKRKSNFAGKFILAAALTALCIFLLKQSPTFSSP 60
MLNF R+R Q R +R FGG++YADPKRKSN GK +LAA LTALCI +LKQS F++P
Sbjct: 1 MLNFTRSRNQPRPSRSMPFGGMEYADPKRKSNVVGKILLAATLTALCILMLKQSSNFNTP 60
Query: 61 SPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE 120
SPFS+HE GVTHVLVTGGAGYIGSHAALRLLKDS+RVTIVDNLSRGN+GA+KVLQE FPE
Sbjct: 61 SPFSRHEPGVTHVLVTGGAGYIGSHAALRLLKDSHRVTIVDNLSRGNLGAIKVLQEQFPE 120
Query: 121 PGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVL 180
PGRLQFIYADLGDAKAVNK FSENAFDAVMHFAAVAYVGESTL+PL+YYHNITSNTLVVL
Sbjct: 121 PGRLQFIYADLGDAKAVNKIFSENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVVL 180
Query: 181 ESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDM 240
E+MA HGV+TLIYSSTCATYGEPEKMPITE+TPQ PINPYGKAKKMAEDIILDFSKNS+M
Sbjct: 181 EAMAAHGVNTLIYSSTCATYGEPEKMPITEQTPQVPINPYGKAKKMAEDIILDFSKNSEM 240
Query: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300
AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAA G+I GLKVKGTDY T DG
Sbjct: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAASGVIPGLKVKGTDYKTPDG 300
Query: 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY 360
TCVRDYIDV DLVDAHVKAL +A P KVGIYNVGTGKGRSVKEFVEACKKAT NIKV Y
Sbjct: 301 TCVRDYIDVTDLVDAHVKALNKAAPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEY 360
Query: 361 EPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
RRPGDYAEV+SDP+KI ELNWTAKYT+LQESL +AWRWQK+HR GY +
Sbjct: 361 LARRPGDYAEVFSDPSKIDHELNWTAKYTDLQESLRVAWRWQKAHRNGYGT 411
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|24417398|gb|AAN60309.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/409 (84%), Positives = 375/409 (91%)
Query: 1 MLNFGRARTQQRQTRPTSFGGLDYADPKRKSNFAGKFILAAALTALCIFLLKQSPTFSSP 60
M +FGRAR+Q RQ R S GGLDYADPK+K+N+ GK +L A+LTALCIF+LKQSPTF++P
Sbjct: 1 MFSFGRARSQGRQNRSMSLGGLDYADPKKKNNYLGKILLTASLTALCIFMLKQSPTFNTP 60
Query: 61 SPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE 120
S FS+HE GVTHVLVTGGAGYIGSHAALRLLK+SYRVTIVDNLSRGN+ AV++LQELFPE
Sbjct: 61 SVFSRHEPGVTHVLVTGGAGYIGSHAALRLLKESYRVTIVDNLSRGNLAAVRILQELFPE 120
Query: 121 PGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVL 180
PGRLQFIYADLGDAKAVNK F+ENAFDAVMHFAA AYVGEST PLKYYHNITSNTLVVL
Sbjct: 121 PGRLQFIYADLGDAKAVNKIFTENAFDAVMHFAAGAYVGESTQFPLKYYHNITSNTLVVL 180
Query: 181 ESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDM 240
E+MA HGV TLIYSSTCATYGEP+ MPITEETPQ PINPYGKAKKMAEDIILDFSKNSDM
Sbjct: 181 ETMAAHGVKTLIYSSTCATYGEPDIMPITEETPQVPINPYGKAKKMAEDIILDFSKNSDM 240
Query: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300
AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGI+ GL++KGTDY TADG
Sbjct: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIMPGLQIKGTDYKTADG 300
Query: 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY 360
TCVRDYIDV DLVDAHVKAL++A+P+KVGIYNVGTGKG SVKEFVEACKKAT IK+ Y
Sbjct: 301 TCVRDYIDVTDLVDAHVKALQKAKPRKVGIYNVGTGKGSSVKEFVEACKKATGVEIKIDY 360
Query: 361 EPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
PRR GDYAEVYSDP+KIR ELNWTAK+TNL+ESLE AWRWQK HR GY
Sbjct: 361 LPRRAGDYAEVYSDPSKIRKELNWTAKHTNLKESLETAWRWQKLHRNGY 409
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117864|ref|XP_002317687.1| predicted protein [Populus trichocarpa] gi|222860752|gb|EEE98299.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/411 (84%), Positives = 371/411 (90%)
Query: 1 MLNFGRARTQQRQTRPTSFGGLDYADPKRKSNFAGKFILAAALTALCIFLLKQSPTFSSP 60
MLNFGR R Q R R S GG+DY+DPKRK+N GK +LAA LTALCI +LKQSPTF SP
Sbjct: 1 MLNFGRTRAQTRSNRSISLGGMDYSDPKRKNNVVGKILLAATLTALCIIMLKQSPTFYSP 60
Query: 61 SPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE 120
SPFS HEEGV HVLVTGGAGYIGSHAALRLLKD YRVTIVDNLSRGNIGAVKVLQELFPE
Sbjct: 61 SPFSLHEEGVIHVLVTGGAGYIGSHAALRLLKDGYRVTIVDNLSRGNIGAVKVLQELFPE 120
Query: 121 PGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVL 180
PGRLQFIYADLGD K VN FS+NAFDAVMHFAAVAYVGEST++PLKYYHNITSNTLVVL
Sbjct: 121 PGRLQFIYADLGDPKTVNIIFSQNAFDAVMHFAAVAYVGESTMEPLKYYHNITSNTLVVL 180
Query: 181 ESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDM 240
E+MA + V TLIYSSTCATYGEPEKMPITE TPQ PINPYGKAKKMAEDIILDFSKNSDM
Sbjct: 181 EAMAANDVKTLIYSSTCATYGEPEKMPITEVTPQVPINPYGKAKKMAEDIILDFSKNSDM 240
Query: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300
A+MILRYFNVIGSDP+GRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDY T DG
Sbjct: 241 AIMILRYFNVIGSDPDGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYKTHDG 300
Query: 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY 360
TC+RDYIDV DLVDAHVKALE+A P KVGIYNVGTGKGRSVKEFV+ACKKAT +IKV Y
Sbjct: 301 TCIRDYIDVTDLVDAHVKALEKAMPGKVGIYNVGTGKGRSVKEFVKACKKATGVDIKVDY 360
Query: 361 EPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
PRRPGDYAEV+SDP+KI ELNWTA+YT+LQ+SL+ AWRWQKSH+ GY S
Sbjct: 361 LPRRPGDYAEVFSDPSKIYRELNWTAQYTDLQKSLQTAWRWQKSHQNGYGS 411
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145324086|ref|NP_001077632.1| UDP-arabinose 4-epimerase [Arabidopsis thaliana] gi|332193132|gb|AEE31253.1| UDP-arabinose 4-epimerase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/409 (84%), Positives = 376/409 (91%), Gaps = 1/409 (0%)
Query: 1 MLNFGRARTQQRQTRPTSFGGLDYADPKRKSNFAGKFILAAALTALCIFLLKQSPTFSSP 60
M +FGRAR+Q RQ R S GGLDYADPK+K+N+ GK +L A+LTALCIF+LKQSPTF++P
Sbjct: 1 MFSFGRARSQGRQNRSMSLGGLDYADPKKKNNYLGKILLTASLTALCIFMLKQSPTFNTP 60
Query: 61 SPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE 120
S FS+HE GVTHVLVTGGAGYIGSHAALRLLK+SYRVTIVDNLSRGN+ AV++LQELFPE
Sbjct: 61 S-FSRHEPGVTHVLVTGGAGYIGSHAALRLLKESYRVTIVDNLSRGNLAAVRILQELFPE 119
Query: 121 PGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVL 180
PGRLQFIYADLGDAKAVNK F+ENAFDAVMHFAAVAYVGEST PLKYYHNITSNTLVVL
Sbjct: 120 PGRLQFIYADLGDAKAVNKIFTENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVL 179
Query: 181 ESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDM 240
E+MA HGV TLIYSSTCATYGEP+ MPITEETPQ PINPYGKAKKMAEDIILDFSKNSDM
Sbjct: 180 ETMAAHGVKTLIYSSTCATYGEPDIMPITEETPQVPINPYGKAKKMAEDIILDFSKNSDM 239
Query: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300
AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGI+ GL++KGTDY TADG
Sbjct: 240 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIMPGLQIKGTDYKTADG 299
Query: 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY 360
TCVRDYIDV DLVDAHVKAL++A+P+KVGIYNVGTGKG SVKEFVEACKKAT IK+ Y
Sbjct: 300 TCVRDYIDVTDLVDAHVKALQKAKPRKVGIYNVGTGKGSSVKEFVEACKKATGVEIKIDY 359
Query: 361 EPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
PRR GDYAEVYSDP+KIR ELNWTAK+TNL+ESLE AWRWQK HR GY
Sbjct: 360 LPRRAGDYAEVYSDPSKIRKELNWTAKHTNLKESLETAWRWQKLHRNGY 408
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|211906524|gb|ACJ11755.1| UDP-D-xylose 4-epimerase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/411 (83%), Positives = 374/411 (90%)
Query: 1 MLNFGRARTQQRQTRPTSFGGLDYADPKRKSNFAGKFILAAALTALCIFLLKQSPTFSSP 60
MLNF R R+Q R TR G++Y DPKRKSNF GK ++AA LTALCI +LKQSP F++
Sbjct: 1 MLNFARGRSQPRSTRSMPLSGMEYPDPKRKSNFVGKILMAATLTALCIIMLKQSPNFNTR 60
Query: 61 SPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE 120
S FS+HEEGV HVLVTGGAGYIGSHAALRLLK+SYRVTIVDNLSRGN+GAVKVLQ+LFPE
Sbjct: 61 SRFSEHEEGVIHVLVTGGAGYIGSHAALRLLKESYRVTIVDNLSRGNMGAVKVLQKLFPE 120
Query: 121 PGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVL 180
PG+LQF+YADLGD KAVNK FSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLV+L
Sbjct: 121 PGQLQFVYADLGDLKAVNKIFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVIL 180
Query: 181 ESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDM 240
ESMA H V TLIYSSTCATYGEPEKMPITEETPQ PINPYGKAKKMAEDIILD+SKNSDM
Sbjct: 181 ESMAAHDVRTLIYSSTCATYGEPEKMPITEETPQVPINPYGKAKKMAEDIILDYSKNSDM 240
Query: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300
AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARG+I GLKVKGTDY T DG
Sbjct: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGVIPGLKVKGTDYKTHDG 300
Query: 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY 360
TC+RDYIDV DLVDAHVKAL++A+P +VGIYNVGTG+GRSVKEFVEACKKAT IKV Y
Sbjct: 301 TCIRDYIDVTDLVDAHVKALKKAKPGEVGIYNVGTGRGRSVKEFVEACKKATGVEIKVDY 360
Query: 361 EPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
RRPGDYAEV+SDPTKIR ELNWTA++T+LQESL+IAW+WQK+HR GYA+
Sbjct: 361 LARRPGDYAEVFSDPTKIRHELNWTAQFTDLQESLQIAWQWQKAHRDGYAA 411
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512628|ref|XP_003525020.1| PREDICTED: UDP-arabinose 4-epimerase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/410 (83%), Positives = 370/410 (90%)
Query: 1 MLNFGRARTQQRQTRPTSFGGLDYADPKRKSNFAGKFILAAALTALCIFLLKQSPTFSSP 60
MLNFGR+R Q R R T+ GG+DYADPKRK NF GK LAAALT LCI ++KQSP+ +SP
Sbjct: 1 MLNFGRSRNQSRAARATTMGGMDYADPKRKGNFVGKVFLAAALTTLCIIMIKQSPSLNSP 60
Query: 61 SPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE 120
SPF+ HE GVTHVLVTGGAGYIGSHA LRLLK++YRVTIVDNLSRGN+GA+KVLQ+LFPE
Sbjct: 61 SPFAVHEPGVTHVLVTGGAGYIGSHATLRLLKENYRVTIVDNLSRGNLGAIKVLQDLFPE 120
Query: 121 PGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVL 180
PGRLQFIYADLGD +VNK F EN FDAVMHFAAVAYVGEST DPLKYYHNITSNTL+VL
Sbjct: 121 PGRLQFIYADLGDPISVNKIFLENKFDAVMHFAAVAYVGESTGDPLKYYHNITSNTLLVL 180
Query: 181 ESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDM 240
ESMA+H V TLIYSSTCATYGEPEKMPITEET Q PINPYGKAKKMAEDIILDFSKNS+M
Sbjct: 181 ESMAKHDVKTLIYSSTCATYGEPEKMPITEETKQVPINPYGKAKKMAEDIILDFSKNSEM 240
Query: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300
AVMILRYFNVIGSDPEGRLGEAPRPELRE GRISGACFDAARGI+ G+KV+GTDY TADG
Sbjct: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREQGRISGACFDAARGIVPGIKVRGTDYKTADG 300
Query: 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY 360
TCVRDYIDV DLVDAHVKALE+AQP KVG YNVGTGKG SVKEFVEACKKAT +IKV Y
Sbjct: 301 TCVRDYIDVTDLVDAHVKALEKAQPSKVGFYNVGTGKGSSVKEFVEACKKATGVDIKVDY 360
Query: 361 EPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYA 410
PRRPGDYAEVYSDPTKI+ ELNWTAK+T+LQ+SL++AWRWQKSHR GY
Sbjct: 361 LPRRPGDYAEVYSDPTKIKHELNWTAKHTDLQQSLKVAWRWQKSHRDGYG 410
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 413 | ||||||
| TAIR|locus:2204639 | 419 | MUR4 "MURUS 4" [Arabidopsis th | 0.990 | 0.976 | 0.816 | 3e-181 | |
| TAIR|locus:2163401 | 436 | DUR "DEFECTIVE UGE IN ROOT" [A | 0.951 | 0.901 | 0.793 | 8.5e-168 | |
| TAIR|locus:2123466 | 351 | UGE5 "UDP-D-glucose/UDP-D-gala | 0.813 | 0.957 | 0.430 | 1e-68 | |
| TAIR|locus:2014235 | 348 | RHD1 "ROOT HAIR DEFECTIVE 1" [ | 0.818 | 0.971 | 0.410 | 3.5e-68 | |
| TAIR|locus:2138121 | 350 | UGE2 "UDP-D-glucose/UDP-D-gala | 0.811 | 0.957 | 0.428 | 1.1e-66 | |
| TIGR_CMR|BA_5700 | 338 | BA_5700 "UDP-glucose 4-epimera | 0.808 | 0.988 | 0.409 | 1.1e-64 | |
| TIGR_CMR|CHY_0545 | 327 | CHY_0545 "UDP-glucose 4-epimer | 0.784 | 0.990 | 0.415 | 1.6e-63 | |
| TIGR_CMR|CJE_1273 | 328 | CJE_1273 "UDP-glucose 4-epimer | 0.779 | 0.981 | 0.414 | 1.4e-62 | |
| UNIPROTKB|Q9KLH0 | 338 | VC_A0774 "UDP-glucose 4-epimer | 0.801 | 0.979 | 0.401 | 2.1e-61 | |
| TIGR_CMR|VC_A0774 | 338 | VC_A0774 "UDP-glucose 4-epimer | 0.801 | 0.979 | 0.401 | 2.1e-61 |
| TAIR|locus:2204639 MUR4 "MURUS 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1759 (624.3 bits), Expect = 3.0e-181, P = 3.0e-181
Identities = 334/409 (81%), Positives = 360/409 (88%)
Query: 1 MLNFGRAXXXXXXXXXXSFGGLDYADPKRKSNFAGKFILAAALTALCIFLLKQXXXXXXX 60
M +FGRA S GGLDYADPK+K+N+ GK +L A+LTALCIF+LKQ
Sbjct: 1 MFSFGRARSQGRQNRSMSLGGLDYADPKKKNNYLGKILLTASLTALCIFMLKQSPTFNTP 60
Query: 61 XXXXQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE 120
+HE GVTHVLVTGGAGYIGSHAALRLLK+SYRVTIVDNLSRGN+ AV++LQELFPE
Sbjct: 61 SVFSRHEPGVTHVLVTGGAGYIGSHAALRLLKESYRVTIVDNLSRGNLAAVRILQELFPE 120
Query: 121 PGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVL 180
PGRLQFIYADLGDAKAVNK F+ENAFDAVMHFAAVAYVGEST PLKYYHNITSNTLVVL
Sbjct: 121 PGRLQFIYADLGDAKAVNKIFTENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVL 180
Query: 181 ESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDM 240
E+MA HGV TLIYSSTCATYGEP+ MPITEETPQ PINPYGKAKKMAEDIILDFSKNSDM
Sbjct: 181 ETMAAHGVKTLIYSSTCATYGEPDIMPITEETPQVPINPYGKAKKMAEDIILDFSKNSDM 240
Query: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300
AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGI+ GL++KGTDY TADG
Sbjct: 241 AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIMPGLQIKGTDYKTADG 300
Query: 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY 360
TCVRDYIDV DLVDAHVKAL++A+P+KVGIYNVGTGKG SVKEFVEACKKAT IK+ Y
Sbjct: 301 TCVRDYIDVTDLVDAHVKALQKAKPRKVGIYNVGTGKGSSVKEFVEACKKATGVEIKIDY 360
Query: 361 EPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
PRR GDYAEVYSDP+KIR ELNWTAK+TNL+ESLE AWRWQK HR GY
Sbjct: 361 LPRRAGDYAEVYSDPSKIRKELNWTAKHTNLKESLETAWRWQKLHRNGY 409
|
|
| TAIR|locus:2163401 DUR "DEFECTIVE UGE IN ROOT" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1632 (579.6 bits), Expect = 8.5e-168, P = 8.5e-168
Identities = 312/393 (79%), Positives = 338/393 (86%)
Query: 19 FGGLDYADPKRKSNFAGKFILAAALTALCIFLLKQXXXXXXXXXXXQHEEGVTHVLVTGG 78
F +D +PK K+N GK +L A+L L I ++ Q Q EEGVTHVLVTGG
Sbjct: 43 FVEMDCLEPKTKNNLTGKLLLVASLLILAIIVISQSSSFTSPSAFSQREEGVTHVLVTGG 102
Query: 79 AGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVN 138
AGYIGSHAALRLL+DSYRVTIVDNLSRGN+GAVK LQ+LFP+ GRLQFIYADLGD AV
Sbjct: 103 AGYIGSHAALRLLRDSYRVTIVDNLSRGNLGAVKTLQQLFPQTGRLQFIYADLGDPLAVE 162
Query: 139 KFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198
K FSENAFDAVMHFAAVAYVGESTL PLKYYHNITSNTL VLE+MARH V LIYSSTCA
Sbjct: 163 KIFSENAFDAVMHFAAVAYVGESTLYPLKYYHNITSNTLGVLEAMARHKVKKLIYSSTCA 222
Query: 199 TYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGR 258
TYGEPEKMPITE+TPQ PINPYGKAKKMAED+ILDFSKNSDMAVMILRYFNVIGSDP GR
Sbjct: 223 TYGEPEKMPITEDTPQVPINPYGKAKKMAEDMILDFSKNSDMAVMILRYFNVIGSDPGGR 282
Query: 259 LGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVK 318
LGEAPRPELRE GRISGACFDAARG I GL+VKGTDY T+DGTC+RDYIDV DLVDAHVK
Sbjct: 283 LGEAPRPELREQGRISGACFDAARGFIPGLQVKGTDYKTSDGTCIRDYIDVTDLVDAHVK 342
Query: 319 ALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKI 378
ALE+AQP+KVGIYNVGTGKGRSVKEFVEACKKAT IKV + PRRPGDYAEVYSDPTKI
Sbjct: 343 ALEKAQPRKVGIYNVGTGKGRSVKEFVEACKKATGVEIKVDFLPRRPGDYAEVYSDPTKI 402
Query: 379 RLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
+LNWTA++TNLQ+SL++AWRWQK H GY S
Sbjct: 403 LKDLNWTARFTNLQDSLQVAWRWQKIHPHGYNS 435
|
|
| TAIR|locus:2123466 UGE5 "UDP-D-glucose/UDP-D-galactose 4-epimerase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 148/344 (43%), Positives = 204/344 (59%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG-RLQFIYAD 130
+VLV+GGAGYIGSH L+LL Y V +VDNL + +++ +++L E G RL F D
Sbjct: 5 NVLVSGGAGYIGSHTVLQLLLGGYSVVVVDNLDNSSAVSLQRVKKLAAEHGERLSFHQVD 64
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
L D A+ K FSE FDAV+HFA + VGES PL YY+N T+ +LE MA+HG
Sbjct: 65 LRDRSALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNLVGTITLLEVMAQHGCKN 124
Query: 191 LIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILD-FSKNSDMAVMILRYFN 249
L++SS+ YG P+++P TEE P + +NPYG+ K E+I D + + + +++LRYFN
Sbjct: 125 LVFSSSATVYGSPKEVPCTEEFPISALNPYGRTKLFIEEICRDVYGSDPEWKIILLRYFN 184
Query: 250 VIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309
+G+ P G +GE PR + A G L V G DY+T DGT VRDYI V
Sbjct: 185 PVGAHPSGDIGEDPRGI---PNNLMPFVQQVAVGRRPHLTVFGNDYNTKDGTGVRDYIHV 241
Query: 310 NDLVDAHVKALERAQPKKVG--IYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 367
DL D H+ AL + + K+G +YN+GTG G SV E V+A +KA+ I ++ RRPGD
Sbjct: 242 IDLADGHIAALRKLEDCKIGCEVYNLGTGNGTSVLEMVDAFEKASGKKIPLVIAGRRPGD 301
Query: 368 YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
VY+ + ELNW AKY ++E W W ++ GY S
Sbjct: 302 AEVVYASTERAESELNWKAKY-GIEEMCRDLWNWASNNPYGYDS 344
|
|
| TAIR|locus:2014235 RHD1 "ROOT HAIR DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 142/346 (41%), Positives = 206/346 (59%)
Query: 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIY- 128
V ++LVTGGAGYIGSH L+LL Y ++DNL ++ +++ +++L + G+ ++
Sbjct: 2 VGNILVTGGAGYIGSHTVLQLLLGGYNTVVIDNLDNSSLVSIQRVKDLAGDHGQNLTVHQ 61
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV 188
DL D A+ K FSE FDAVMHFA + VGES PL YY+N T+ +LE MA HG
Sbjct: 62 VDLRDKPALEKVFSETKFDAVMHFAGLKAVGESVAKPLLYYNNNLIATITLLEVMAAHGC 121
Query: 189 DTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNS-DMAVMILRY 247
L++SS+ YG P+++P TEE+P + ++PYG+ K EDI D + + +++LRY
Sbjct: 122 KKLVFSSSATVYGWPKEVPCTEESPLSGMSPYGRTKLFIEDICRDVQRGDPEWRIIMLRY 181
Query: 248 FNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307
FN +G+ P GR+GE P + G + LK+ GTDY+T DGT VRDYI
Sbjct: 182 FNPVGAHPSGRIGEDP---CGTPNNLMPYVQQVVVGRLPNLKIYGTDYTTKDGTGVRDYI 238
Query: 308 DVNDLVDAHVKALERAQPKKVG--IYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRP 365
V DL D H+ AL++ ++G +YN+GTGKG +V E V+A +KA+ I ++ RRP
Sbjct: 239 HVVDLADGHICALQKLDDTEIGCEVYNLGTGKGTTVLEMVDAFEKASGMKIPLVKVGRRP 298
Query: 366 GDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
GD VY+ K ELNW A + ++E W W ++ GY S
Sbjct: 299 GDAETVYASTEKAERELNWKANF-GIEEMCRDQWNWASNNPFGYGS 343
|
|
| TAIR|locus:2138121 UGE2 "UDP-D-glucose/UDP-D-galactose 4-epimerase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 147/343 (42%), Positives = 199/343 (58%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG-RLQFIYADL 131
VLVTGGAGYIGSH L+LL+ Y +VDN + +++ +++L E G RL F DL
Sbjct: 5 VLVTGGAGYIGSHTVLQLLEGGYSAVVVDNYDNSSAASLQRVKKLAGENGNRLSFHQVDL 64
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
D A+ K FSE FDAV+HFA + VGES PL YY+N T+ +LE MA++G L
Sbjct: 65 RDRPALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNIVGTVTLLEVMAQYGCKNL 124
Query: 192 IYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN-SDMAVMILRYFNV 250
++SS+ YG P+++P TEE+P + NPYG+ K E+I D ++ S+ +++LRYFN
Sbjct: 125 VFSSSATVYGWPKEVPCTEESPISATNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNP 184
Query: 251 IGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310
+G+ P G +GE P L + A G L V GTDY T DGT VRDYI V
Sbjct: 185 VGAHPSGYIGEDP---LGVPNNLMPYVQQVAVGRRPHLTVFGTDYKTKDGTGVRDYIHVM 241
Query: 311 DLVDAHVKALERAQPKKVG--IYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDY 368
DL D H+ AL + K+ +YN+GTG G SV E V A +KA+ I ++ RRPGD
Sbjct: 242 DLADGHIAALRKLDDLKISCEVYNLGTGNGTSVLEMVAAFEKASGKKIPLVMAGRRPGDA 301
Query: 369 AEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
VY+ K ELNW AK ++E W W ++ GY S
Sbjct: 302 EVVYASTEKAERELNWKAK-NGIEEMCRDLWNWASNNPYGYNS 343
|
|
| TIGR_CMR|BA_5700 BA_5700 "UDP-glucose 4-epimerase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 140/342 (40%), Positives = 204/342 (59%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+TGGAGYIGSH + LL ++Y++ +VDNLS +I ++ ++E+ + + +F ++
Sbjct: 3 ILITGGAGYIGSHTCVELLNNNYKIIVVDNLSNSSIESLNRVKEITGK--QFEFYKENVL 60
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ + +N+ F EN +AV+HFA VGEST PL YY+N + +V+ + M +H V I
Sbjct: 61 NREKMNEIFLENNIEAVIHFAGFKAVGESTTTPLAYYYNNIISAIVLCDVMQKHNVKNFI 120
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSD-MAVMILRYFNVI 251
+SS+ YG P+ +PITEE P + NPYG+ K M E I+ D +K D ++ +LRYFN
Sbjct: 121 FSSSATVYGIPKTLPITEEFPLSVTNPYGQTKLMIEQIMRDVAKADDEWSIALLRYFNPF 180
Query: 252 GSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVND 311
G+ GR+GE P + A G + L + G DY T DGT VRDYI V D
Sbjct: 181 GAHQSGRIGEDPNGI---PNNLMPYVTQVAVGKLKELNIFGNDYPTKDGTGVRDYIHVVD 237
Query: 312 LVDAHVKALERA-QPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAE 370
L HVKALE+ + K + YN+GTGKG SV E V+A +K + I RRPGD A
Sbjct: 238 LAKGHVKALEKVLKTKGIEAYNLGTGKGYSVLEMVKAFEKVSGKKIPYKVIGRRPGDVAI 297
Query: 371 VYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYASI 412
++D +K + EL W A+Y L+E +WRWQ +++ GY I
Sbjct: 298 CFADVSKAKRELGWEAEY-GLEEMCVDSWRWQVNNKNGYQMI 338
|
|
| TIGR_CMR|CHY_0545 CHY_0545 "UDP-glucose 4-epimerase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
Identities = 140/337 (41%), Positives = 194/337 (57%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+LVTGGAGYIGSH +L + +V +VDNLS+G+ AV R + I D G
Sbjct: 2 ILVTGGAGYIGSHIVRQLCLKNEKVLVVDNLSKGHKKAVDT---------RAKLIVGDFG 52
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D + + F + AV+H AA + VGES P KY+ S TL +L+ M + V ++
Sbjct: 53 DENLLLEIFKKYDIKAVIHMAAQSLVGESMSQPEKYFEENISKTLSLLKVMLKANVKKMV 112
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIG 252
+SST A YGEPEK PITE+ PQ P N YG +K + E + + + + LRYFN G
Sbjct: 113 FSSTAAVYGEPEKWPITEDFPQKPTNVYGYSKLVIEQCLEWYRQIHGFNYVSLRYFNAAG 172
Query: 253 SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDL 312
+DP G +GE PE H + F G L V GTDY T DGTC+RDYI VNDL
Sbjct: 173 ADPSGDIGEDHNPET--H--LIPLIFKVILGEQEELTVFGTDYPTPDGTCIRDYIHVNDL 228
Query: 313 VDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVY 372
+AH+ AL + + G+YN+G KG SVKE ++ ++ T +KV Y RRPGD A +
Sbjct: 229 AEAHILALNKLNKDESGVYNLGNQKGFSVKEIIKVAEEVTGVKVKVRYGQRRPGDPAVLV 288
Query: 373 SDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
+ KI+ ELN+T K+ +++ ++ AW W K++ GY
Sbjct: 289 ASSEKIQKELNFTPKFGDIKTIVQTAWEWHKNNPRGY 325
|
|
| TIGR_CMR|CJE_1273 CJE_1273 "UDP-glucose 4-epimerase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 138/333 (41%), Positives = 203/333 (60%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L++GGAGYIGSH + LK + + ++DNLS+G+ A++ LQ++ +F DL
Sbjct: 3 ILISGGAGYIGSHTLRQFLKTDHEICVLDNLSKGSKIAIEDLQKI----RAFKFFEQDLS 58
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D + V F FDA++HFAA V ES +PLKYY N T NT ++E+ + GV+ I
Sbjct: 59 DFQGVKALFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNTTNLIETCLQTGVNKFI 118
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVI 251
+SST ATYGEP+ ++E +P APINPYG++K M+E+++ D S N + ILRYFNV
Sbjct: 119 FSSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVLRDASMANPEFKHCILRYFNVA 178
Query: 252 GSDPEGRLGEA-PRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310
G+ + LG+ P+ L +++ C A G L + G DY T DGTC+RD+I V+
Sbjct: 179 GACMDYTLGQRYPKATLLI--KVAAEC---AAGKRDKLFIFGDDYDTKDGTCIRDFIHVD 233
Query: 311 DLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAE 370
D+ AH+ L+ Q + ++NVG G G SVKE +EA KK + + KV PRR GD +
Sbjct: 234 DISSAHLATLDYLQENESNVFNVGYGHGFSVKEVIEAMKKVSGVDFKVELAPRRAGDPSV 293
Query: 371 VYSDPTKIRLELNWTAKYTNLQESLEIAWRWQK 403
+ SD +KIR +W KY +L+ + A+ W+K
Sbjct: 294 LISDASKIRNLTSWQPKYDDLELICKSAFDWEK 326
|
|
| UNIPROTKB|Q9KLH0 VC_A0774 "UDP-glucose 4-epimerase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 136/339 (40%), Positives = 193/339 (56%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGG GYIGSH +++++ I+DNL + + ++++ R QF+ D+
Sbjct: 3 VLVTGGMGYIGSHTCIQMIQAGMTPVILDNLYNSKVTVLDRIEKVIGV--RPQFVQGDIR 60
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D + ++ +AV+HFA + VGES PL+YY N + TLV++ +M GV +L+
Sbjct: 61 DKALLVDLMQQHNIEAVVHFAGLKAVGESVQKPLEYYDNNVNGTLVLVAAMREAGVKSLV 120
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVI 251
+SS+ YGEP +PITE P NPYG++K M E+ + DF K N D ++ +LRYFN +
Sbjct: 121 FSSSATVYGEPTSVPITESFPTKAANPYGRSKLMVEECLTDFQKANPDWSITLLRYFNPV 180
Query: 252 GSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVND 311
GS P G LGE P+ + A G L V G+DY T DGT VRDYI V D
Sbjct: 181 GSHPSGELGEDPQGI---PNNLMPFVTQVAVGRREYLSVFGSDYPTKDGTGVRDYIHVMD 237
Query: 312 LVDAHVKALERAQP-KKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAE 370
L D H+ AL++ + IYN+GTGKG SV + V+A + A+ + RRPGD AE
Sbjct: 238 LADGHIAALKKVGTCAGLHIYNLGTGKGYSVLDVVKAFETASGRTVPYKLVDRRPGDIAE 297
Query: 371 VYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
++DPTK +L W A NL + AW WQ ++ GY
Sbjct: 298 YWADPTKAAQDLGWKAT-RNLHTMAQDAWCWQSNNPQGY 335
|
|
| TIGR_CMR|VC_A0774 VC_A0774 "UDP-glucose 4-epimerase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 136/339 (40%), Positives = 193/339 (56%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGG GYIGSH +++++ I+DNL + + ++++ R QF+ D+
Sbjct: 3 VLVTGGMGYIGSHTCIQMIQAGMTPVILDNLYNSKVTVLDRIEKVIGV--RPQFVQGDIR 60
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D + ++ +AV+HFA + VGES PL+YY N + TLV++ +M GV +L+
Sbjct: 61 DKALLVDLMQQHNIEAVVHFAGLKAVGESVQKPLEYYDNNVNGTLVLVAAMREAGVKSLV 120
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVI 251
+SS+ YGEP +PITE P NPYG++K M E+ + DF K N D ++ +LRYFN +
Sbjct: 121 FSSSATVYGEPTSVPITESFPTKAANPYGRSKLMVEECLTDFQKANPDWSITLLRYFNPV 180
Query: 252 GSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVND 311
GS P G LGE P+ + A G L V G+DY T DGT VRDYI V D
Sbjct: 181 GSHPSGELGEDPQGI---PNNLMPFVTQVAVGRREYLSVFGSDYPTKDGTGVRDYIHVMD 237
Query: 312 LVDAHVKALERAQP-KKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAE 370
L D H+ AL++ + IYN+GTGKG SV + V+A + A+ + RRPGD AE
Sbjct: 238 LADGHIAALKKVGTCAGLHIYNLGTGKGYSVLDVVKAFETASGRTVPYKLVDRRPGDIAE 297
Query: 371 VYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
++DPTK +L W A NL + AW WQ ++ GY
Sbjct: 298 YWADPTKAAQDLGWKAT-RNLHTMAQDAWCWQSNNPQGY 335
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9W0P5 | GALE_DROME | 5, ., 1, ., 3, ., 2 | 0.4057 | 0.8062 | 0.9514 | yes | no |
| Q9Y7X5 | UGE1_SCHPO | No assigned EC number | 0.3808 | 0.8014 | 0.9323 | yes | no |
| Q8H0B6 | ARAE2_ORYSJ | 5, ., 1, ., 3, ., 5 | 0.8102 | 0.9443 | 0.9974 | no | no |
| P55180 | GALE_BACSU | 5, ., 1, ., 3, ., 2 | 0.4314 | 0.8014 | 0.9764 | yes | no |
| P56997 | GALE_NEIMA | 5, ., 1, ., 3, ., 2 | 0.3702 | 0.8087 | 0.9852 | yes | no |
| Q8H0B2 | ARAE3_ORYSJ | 5, ., 1, ., 3, ., 5 | 0.7864 | 0.9782 | 0.9950 | yes | no |
| Q9FI17 | ARAE4_ARATH | 5, ., 1, ., 3, ., 5 | 0.7586 | 0.9951 | 0.9426 | no | no |
| Q5R8D0 | GALE_PONAB | 5, ., 1, ., 3, ., 2 | 0.3879 | 0.8062 | 0.9568 | yes | no |
| Q05026 | GALE_NEIGO | 5, ., 1, ., 3, ., 2 | 0.3742 | 0.8014 | 0.9792 | yes | no |
| O64749 | ARAE2_ARATH | 5, ., 1, ., 3, ., 5 | 0.8345 | 0.9927 | 0.9832 | no | no |
| Q8R059 | GALE_MOUSE | 5, ., 1, ., 3, ., 2 | 0.3908 | 0.8062 | 0.9596 | yes | no |
| P56985 | GALE_NEIMB | 5, ., 1, ., 3, ., 2 | 0.3735 | 0.8014 | 0.9764 | yes | no |
| Q8H930 | ARAE1_ORYSJ | 5, ., 1, ., 3, ., 5 | 0.7845 | 0.9903 | 0.9714 | no | no |
| Q553X7 | GALE_DICDI | 5, ., 1, ., 3, ., 2 | 0.3870 | 0.8038 | 0.9651 | yes | no |
| Q14376 | GALE_HUMAN | 5, ., 1, ., 3, ., 2 | 0.3879 | 0.8062 | 0.9568 | yes | no |
| Q9SUN3 | ARAE3_ARATH | 5, ., 1, ., 3, ., 5 | 0.8321 | 0.9927 | 0.9975 | no | no |
| Q9SA77 | ARAE1_ARATH | 5, ., 1, ., 3, ., 5 | 0.8484 | 0.9903 | 0.9761 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.1.3 | 0.998 |
| 3rd Layer | 5.1.3.5 | 0.994 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 413 | |||
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 1e-164 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 1e-150 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 1e-140 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 1e-113 | |
| PRK10675 | 338 | PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro | 1e-80 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 7e-71 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 6e-59 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 9e-57 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 5e-48 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 2e-44 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 3e-44 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 6e-40 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 4e-39 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 1e-37 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 3e-36 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 2e-32 | |
| cd05248 | 317 | cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto | 2e-31 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 4e-31 | |
| TIGR02197 | 314 | TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep | 2e-30 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 7e-30 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 2e-28 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 3e-28 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 1e-24 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 1e-23 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 3e-21 | |
| COG1089 | 345 | COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve | 4e-21 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 5e-21 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 2e-20 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 5e-19 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 1e-18 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 1e-18 | |
| PLN02166 | 436 | PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | 2e-18 | |
| PRK15181 | 348 | PRK15181, PRK15181, Vi polysaccharide biosynthesis | 5e-18 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 1e-17 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 8e-17 | |
| pfam13950 | 62 | pfam13950, Epimerase_Csub, UDP-glucose 4-epimerase | 8e-16 | |
| PLN02206 | 442 | PLN02206, PLN02206, UDP-glucuronate decarboxylase | 2e-15 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 4e-13 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 4e-13 | |
| PRK10084 | 352 | PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; | 4e-13 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 1e-12 | |
| PRK10217 | 355 | PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; | 3e-12 | |
| PLN02653 | 340 | PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | 5e-12 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 2e-11 | |
| TIGR01472 | 343 | TIGR01472, gmd, GDP-mannose 4,6-dehydratase | 2e-11 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 5e-11 | |
| cd08958 | 293 | cd08958, FR_SDR_e, flavonoid reductase (FR), exten | 8e-11 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 2e-10 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 2e-10 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 7e-10 | |
| PRK11150 | 308 | PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epi | 7e-10 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 1e-09 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 2e-09 | |
| cd05255 | 382 | cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synth | 2e-09 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 6e-09 | |
| TIGR01214 | 287 | TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | 9e-09 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 2e-08 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 9e-08 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 1e-07 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 4e-07 | |
| PLN02725 | 306 | PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5- | 6e-07 | |
| cd05233 | 234 | cd05233, SDR_c, classical (c) SDRs | 9e-07 | |
| PRK05653 | 246 | PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-06 | |
| PRK12825 | 249 | PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-06 | |
| cd09812 | 339 | cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid | 6e-06 | |
| TIGR03589 | 324 | TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehyd | 1e-05 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 2e-05 | |
| PLN02572 | 442 | PLN02572, PLN02572, UDP-sulfoquinovose synthase | 2e-05 | |
| cd05229 | 302 | cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | 3e-05 | |
| cd05357 | 234 | cd05357, PR_SDR_c, pteridine reductase (PR), class | 4e-05 | |
| cd05272 | 308 | cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext | 5e-05 | |
| cd05262 | 291 | cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | 6e-05 | |
| TIGR01777 | 291 | TIGR01777, yfcH, TIGR01777 family protein | 7e-05 | |
| PRK12826 | 251 | PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote | 1e-04 | |
| pfam13460 | 182 | pfam13460, NAD_binding_10, NADH(P)-binding | 1e-04 | |
| PLN02427 | 386 | PLN02427, PLN02427, UDP-apiose/xylose synthase | 2e-04 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 2e-04 | |
| TIGR01830 | 239 | TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier | 2e-04 | |
| cd05242 | 296 | cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | 3e-04 | |
| COG1028 | 251 | COG1028, FabG, Dehydrogenases with different speci | 6e-04 | |
| cd05366 | 257 | cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol | 7e-04 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 8e-04 | |
| PRK07453 | 322 | PRK07453, PRK07453, protochlorophyllide oxidoreduc | 9e-04 | |
| cd08939 | 239 | cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine | 0.001 | |
| PRK12827 | 249 | PRK12827, PRK12827, short chain dehydrogenase; Pro | 0.001 | |
| PLN02657 | 390 | PLN02657, PLN02657, 3,8-divinyl protochlorophyllid | 0.001 | |
| PRK12939 | 250 | PRK12939, PRK12939, short chain dehydrogenase; Pro | 0.002 | |
| cd05344 | 253 | cd05344, BKR_like_SDR_like, putative beta-ketoacyl | 0.002 | |
| TIGR02415 | 254 | TIGR02415, 23BDH, acetoin reductases | 0.002 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 0.002 | |
| cd05333 | 240 | cd05333, BKR_SDR_c, beta-Keto acyl carrier protein | 0.002 | |
| pfam00106 | 167 | pfam00106, adh_short, short chain dehydrogenase | 0.003 | |
| TIGR02622 | 349 | TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra | 0.003 | |
| cd05327 | 269 | cd05327, retinol-DH_like_SDR_c_like, retinol dehyd | 0.004 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 0.004 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 0.004 | |
| PRK08643 | 256 | PRK08643, PRK08643, acetoin reductase; Validated | 0.004 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 462 bits (1191), Expect = e-164
Identities = 154/333 (46%), Positives = 199/333 (59%), Gaps = 11/333 (3%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
VLVTGGAGYIGSH + LL+ Y V ++DNLS G+ A+ ++++ E F D+
Sbjct: 1 KVLVTGGAGYIGSHTVVELLEAGYDVVVLDNLSNGHREALPRIEKIRIE-----FYEGDI 55
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
D A++K F+E+ DAV+HFAA+ VGES PLKYY N TL +LE+M HGV
Sbjct: 56 RDRAALDKVFAEHKIDAVIHFAALKAVGESVQKPLKYYDNNVVGTLNLLEAMRAHGVKNF 115
Query: 192 IYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVI 251
++SS+ A YGEPE +PITEE P P NPYG+ K M E I+ D +K + +ILRYFN
Sbjct: 116 VFSSSAAVYGEPETVPITEEAPLNPTNPYGRTKLMVEQILRDLAKAPGLNYVILRYFNPA 175
Query: 252 GSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVND 311
G+ P G +GE P+ + A G L + G DY T DGTCVRDYI V D
Sbjct: 176 GAHPSGLIGEDPQIP----NNLIPYVLQVALGRREKLAIFGDDYPTPDGTCVRDYIHVVD 231
Query: 312 LVDAHVKALERAQP-KKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAE 370
L DAHV ALE+ + IYN+GTG+G SV E VEA +K + I PRR GD A
Sbjct: 232 LADAHVLALEKLENGGGSEIYNLGTGRGYSVLEVVEAFEKVSGKPIPYEIAPRRAGDPAS 291
Query: 371 VYSDPTKIRLELNWTAKYTNLQESLEIAWRWQK 403
+ +DP+K R EL W K +L++ E AW WQ
Sbjct: 292 LVADPSKAREELGWKPK-RDLEDMCEDAWNWQS 323
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 428 bits (1103), Expect = e-150
Identities = 156/341 (45%), Positives = 204/341 (59%), Gaps = 18/341 (5%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGGAGYIGSH +LLK + V ++DNLS G+ A+ LQ +F DL
Sbjct: 3 VLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQ--------FKFYEGDLL 54
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D + F EN DAV+HFAA VGES +PLKYY N TL ++E+M + GV I
Sbjct: 55 DRALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFI 114
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIG 252
+SST A YGEP PI+E +P APINPYG++K M+E+I+ D +K + V+ILRYFNV G
Sbjct: 115 FSSTAAVYGEPTTSPISETSPLAPINPYGRSKLMSEEILRDAAKANPFKVVILRYFNVAG 174
Query: 253 SDPEGRLGEAPRPE--LREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310
+ P+G LG+ L I A +AA G L + G DY T DGTC+RDYI V+
Sbjct: 175 ACPDGTLGQRYPGATLL-----IPVAA-EAALGKRDKLFIFGDDYDTKDGTCIRDYIHVD 228
Query: 311 DLVDAHVKALER-AQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 369
DL DAHV AL+ + I+N+G+G G SV E +EA KK T +I V PRR GD A
Sbjct: 229 DLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPRRAGDPA 288
Query: 370 EVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQK-SHRGGY 409
+ +D +K R L W Y +L++ ++ AW W + H GY
Sbjct: 289 ILVADSSKARQILGWQPTYDDLEDIIKDAWDWHQQRHGDGY 329
|
Length = 329 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 402 bits (1035), Expect = e-140
Identities = 155/335 (46%), Positives = 207/335 (61%), Gaps = 10/335 (2%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+LVTGGAGYIGSH +LL+ + V I+DNLS G+ A+ + + P F+ DL
Sbjct: 2 ILVTGGAGYIGSHTVRQLLESGHEVVILDNLSNGSREALPRGERITPVT----FVEGDLR 57
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D + +++ F E+ DAV+HFA + VGES PLKYY N TL +LE+M + GV I
Sbjct: 58 DRELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKKFI 117
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVI 251
+SS+ A YGEP +PI+E++P PINPYG++K M+E I+ D K + D + +ILRYFNV
Sbjct: 118 FSSSAAVYGEPSSIPISEDSPLGPINPYGRSKLMSEQILRDLQKADPDWSYVILRYFNVA 177
Query: 252 GSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVND 311
G+ P G +GE P I AC A G L + GTDY T DGTCVRDYI V D
Sbjct: 178 GAHPSGDIGEDPPGITH---LIPYAC-QVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMD 233
Query: 312 LVDAHVKALER-AQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAE 370
L DAH+ ALE +YN+G G+G SV E +EA KK + + V PRRPGD A
Sbjct: 234 LADAHLAALEYLLNGGGSHVYNLGYGQGFSVLEVIEAFKKVSGKDFPVELAPRRPGDPAS 293
Query: 371 VYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
+ +D +KIR EL W KYT+L+E ++ AWRW+ +
Sbjct: 294 LVADASKIRRELGWQPKYTDLEEIIKDAWRWESRN 328
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 335 bits (862), Expect = e-113
Identities = 150/352 (42%), Positives = 200/352 (56%), Gaps = 25/352 (7%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG-RLQFIYADL 131
+LVTGGAGYIGSH L+LL Y+V ++DNL + A++ ++EL + G L F DL
Sbjct: 8 ILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDL 67
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
D +A+ K F+ FDAV+HFA + VGES PL YY N T+ +LE MA+HG L
Sbjct: 68 RDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKL 127
Query: 192 IYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNV 250
++SS+ YG+PE++P TEE P + NPYG+ K E+I D + + +++LRYFN
Sbjct: 128 VFSSSATVYGQPEEVPCTEEFPLSATNPYGRTKLFIEEICRDIHASDPEWKIILLRYFNP 187
Query: 251 IGSDPEGRLGEAPR-------PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCV 303
+G+ P GR+GE P+ P +++ A G L V G DY T DGT V
Sbjct: 188 VGAHPSGRIGEDPKGIPNNLMPYVQQ----------VAVGRRPELTVFGNDYPTKDGTGV 237
Query: 304 RDYIDVNDLVDAHVKALER--AQPKKVG--IYNVGTGKGRSVKEFVEACKKATSANIKVI 359
RDYI V DL D H+ AL + P +G YN+GTGKG SV E V A +KA+ I +
Sbjct: 238 RDYIHVMDLADGHIAALRKLFTDP-DIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLK 296
Query: 360 YEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
PRRPGD EVY+ K EL W AKY + E W W + GY S
Sbjct: 297 LAPRRPGDAEEVYASTEKAEKELGWKAKYG-IDEMCRDQWNWASKNPYGYGS 347
|
Length = 352 |
| >gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 251 bits (643), Expect = 1e-80
Identities = 133/347 (38%), Positives = 185/347 (53%), Gaps = 23/347 (6%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ + + ++A D V+HFA + VGES PL+YY N + TL ++ +M V LI
Sbjct: 61 NEALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLI 120
Query: 193 YSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNV 250
+SS+ YG+ K+P E P P +PYGK+K M E I+ D K D ++ +LRYFN
Sbjct: 121 FSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 251 IGSDPEGRLGEAPR-------PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCV 303
+G+ P G +GE P+ P + + A G L + G DY T DGT V
Sbjct: 181 VGAHPSGDMGEDPQGIPNNLMPYIAQ----------VAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 304 RDYIDVNDLVDAHVKALERAQPKK-VGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEP 362
RDYI V DL D HV A+E+ K V IYN+G G G SV + V A KA + + P
Sbjct: 231 RDYIHVMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAP 290
Query: 363 RRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
RR GD ++D +K ELNW T L E + W WQ H GY
Sbjct: 291 RREGDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
|
Length = 338 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 224 bits (574), Expect = 7e-71
Identities = 106/332 (31%), Positives = 154/332 (46%), Gaps = 31/332 (9%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE-PGRLQFIYAD 130
VLVTGGAG+IGSH RLL+ + V ++DNLS G +E PE ++FI D
Sbjct: 1 RVLVTGGAGFIGSHLVERLLERGHEVIVLDNLSTGK-------KENLPEVKPNVKFIEGD 53
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ D + V F D V H AA A V S DP+K + TL +LE+ + GV
Sbjct: 54 IRDDELVEFAFEG--VDYVFHQAAQASVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVKR 111
Query: 191 LIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNV 250
+Y+S+ + YG+P +P E+ P P++PY +K E F++ + + LRYFNV
Sbjct: 112 FVYASSSSVYGDPPYLPKDEDHPPNPLSPYAVSKYAGELYCQVFARLYGLPTVSLRYFNV 171
Query: 251 IGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD-YSTADGTCVRDYIDV 309
G P A I +KG DG RD+ V
Sbjct: 172 YG--PRQDPNGGYA---------------AVIPIFIERALKGEPPTIYGDGEQTRDFTYV 214
Query: 310 NDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 369
D+V+A++ A +YN+GTGK SV E E ++ ++ +Y P RPGD
Sbjct: 215 EDVVEANLLAATAGAGG--EVYNIGTGKRTSVNELAELIREILGKELEPVYAPPRPGDVR 272
Query: 370 EVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
+D +K + L W K + +E L + W
Sbjct: 273 HSLADISKAKKLLGWEPKVS-FEEGLRLTVEW 303
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 6e-59
Identities = 85/262 (32%), Positives = 125/262 (47%), Gaps = 29/262 (11%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+LVTGG G+IGSH RLL++ Y V L R + GR++F DL
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEVI---VLGRRR-------RSESLNTGRIRFHEGDLT 50
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D A+ + +E DAV+H AA + VG S DP + TL +LE+ R GV +
Sbjct: 51 DPDALERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAGVKRFV 110
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIG 252
++S+ YG+ PITE+TP P++PY AK AE ++ +++ + +ILR FNV G
Sbjct: 111 FASSSEVYGDVADPPITEDTPLGPLSPYAAAKLAAERLVEAYARAYGLRAVILRLFNVYG 170
Query: 253 SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDL 312
++ R I+ G + DGT RD++ V+D+
Sbjct: 171 -------------PGNPDPFVTHVIPALIRRILEGKPI--LLLG--DGTQRRDFLYVDDV 213
Query: 313 VDAHVKALERAQPKKVGIYNVG 334
A + ALE P IYN+G
Sbjct: 214 ARAILLALE--HPDGGEIYNIG 233
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 9e-57
Identities = 103/344 (29%), Positives = 157/344 (45%), Gaps = 38/344 (11%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
+LVTGGAG+IGSH RLL + V +D L G P ++F+ DL
Sbjct: 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLD----------PLLSGVEFVVLDL 51
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTL-DPLKYYHNITSNTLVVLESMARHGVDT 190
D V++ DAV+H AA + V +S DP ++ TL +LE+ GV
Sbjct: 52 TDRDLVDELAKG-VPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKR 110
Query: 191 LIYSSTCAT-YGEPEKMPITEE-TPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYF 248
+++S+ + YG+P +PI E+ P P+NPYG +K AE ++ +++ + V+ILR F
Sbjct: 111 FVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILRPF 170
Query: 249 NVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308
NV G + + + I LK + DG+ RD++
Sbjct: 171 NVYG----------------PGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVY 214
Query: 309 VNDLVDAHVKALERAQPKKVGIYNVGTGKG-RSVKEFVEACKKAT--SANIKVIYEPRRP 365
V+D+ DA + ALE G++N+G+G +V+E EA +A A + V R
Sbjct: 215 VDDVADALLLALEN---PDGGVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRR 271
Query: 366 GDYAEVYS-DPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGG 408
GD E D +K R L W K + L+E L W
Sbjct: 272 GDLREGKLLDISKARAALGWEPKVS-LEEGLADTLEWLLKKLEL 314
|
Length = 314 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 5e-48
Identities = 79/263 (30%), Positives = 118/263 (44%), Gaps = 64/263 (24%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+LVTGGAG+IGSH RLL+ + V ++D
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERGHEVVVIDR------------------------------ 30
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH-NITSNTLVVLESMARHGVDTL 191
D V+H AA+ V S +P + + N+ TL +LE+ + GV
Sbjct: 31 -------------LDVVVHLAALVGVPASWDNPDEDFETNVVG-TLNLLEAARKAGVKRF 76
Query: 192 IYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVI 251
+Y+S+ + YG PE +P EETP P++PYG +K AE ++ + ++ + V+ILR NV
Sbjct: 77 VYASSASVYGSPEGLPEEEETPPRPLSPYGVSKLAAEHLLRSYGESYGLPVVILRLANVY 136
Query: 252 GSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVND 311
G P R G ++ A G L V G G RD+I V+D
Sbjct: 137 G----------PGQRPRLDGVVNDFIRRALEG--KPLTVFG------GGNQTRDFIHVDD 178
Query: 312 LVDAHVKALERAQPKKVGIYNVG 334
+V A + ALE + G+YN+G
Sbjct: 179 VVRAILHALENP-LEGGGVYNIG 200
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 2e-44
Identities = 96/327 (29%), Positives = 144/327 (44%), Gaps = 38/327 (11%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
+LVTGGAG+IGSH RLL++ V +VDNLS G ++ E +F+ DL
Sbjct: 1 RILVTGGAGFIGSHLVDRLLEEGNEVVVVDNLSSGRRENIEPEFENK----AFRFVKRDL 56
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
D ++ D V H AA V DP T VLE+M +GV +
Sbjct: 57 LDTADK---VAKKDGDTVFHLAANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVKRI 113
Query: 192 IYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVI 251
+++S+ YGE + +P E+ P PI+ YG +K AE +I ++ I R+ N++
Sbjct: 114 VFASSSTVYGEAKVIPTPEDYPPLPISVYGASKLAAEALISAYAHLFGFQAWIFRFANIV 173
Query: 252 GSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG---LKVKGTDYSTADGTCVRDYID 308
G PR HG I +D + L+V G DG + Y+
Sbjct: 174 G----------PR---STHGVI----YDFINKLKRNPNELEVLG------DGRQRKSYLY 210
Query: 309 VNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEP-RR--P 365
V+D VDA + A E++ V I+N+G SV E E + + Y R
Sbjct: 211 VSDCVDAMLLAWEKSTE-GVNIFNLGNDDTISVNEIAEIVIEELGLKPRFKYSGGDRGWK 269
Query: 366 GDYAEVYSDPTKIRLELNWTAKYTNLQ 392
GD + D K++ L W +Y + +
Sbjct: 270 GDVPYMRLDIEKLKA-LGWKPRYNSEE 295
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 3e-44
Identities = 109/357 (30%), Positives = 170/357 (47%), Gaps = 53/357 (14%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQ---ELFPEPGRLQFIYA 129
+LVTG AG+IG H A RLL+ V +DNL+ + V++ + EL + G +F+
Sbjct: 3 ILVTGAAGFIGFHVAKRLLERGDEVVGIDNLN--DYYDVRLKEARLELLGKSGGFKFVKG 60
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN---TLVVLESMARH 186
DL D +A+ + F ++ FDAV+H AA A V S +P Y + SN L +LE
Sbjct: 61 DLEDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAY---VDSNIVGFLNLLELCRHF 117
Query: 187 GVDTLIYSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSKNSDMAVMIL 245
GV L+Y+S+ + YG KMP +E+ PI+ Y KK E + +S + L
Sbjct: 118 GVKHLVYASSSSVYGLNTKMPFSEDDRVDHPISLYAATKKANELMAHTYSHLYGIPTTGL 177
Query: 246 RYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG--LKVKGTDYSTADGTCV 303
R+F V G RP++ A F + I+ G + V DG
Sbjct: 178 RFFTV--------YGPWGRPDM--------ALFLFTKAILEGKPIDVFN------DGNMS 215
Query: 304 RDYIDVNDLVDAHVKALER-AQPKKVG---------------IYNVGTGKGRSVKEFVEA 347
RD+ ++D+V+ V+AL+ A+P +YN+G + +F+EA
Sbjct: 216 RDFTYIDDIVEGVVRALDTPAKPNPNWDAEAPDPSTSSAPYRVYNIGNNSPVKLMDFIEA 275
Query: 348 CKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKS 404
+KA K Y P + GD E Y+D +K++ L + K T+L+E ++ W K
Sbjct: 276 LEKALGKKAKKNYLPMQKGDVPETYADISKLQRLLGYKPK-TSLEEGVKRFVEWYKE 331
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 6e-40
Identities = 96/331 (29%), Positives = 158/331 (47%), Gaps = 35/331 (10%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VL+ GG G+IGSH LL++ +V + R + P G + +I D
Sbjct: 2 VLIVGGNGFIGSHLVDALLEEGPQVRV---FDR------SIPPYELPLGG-VDYIKGDYE 51
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDP-LKYYHNITSNTLVVLESMARHGVDTL 191
+ + D V+H A+ S +P L N+ T+ +LE+ A G+ +
Sbjct: 52 NRADLESALVG--IDTVIHLASTTNPATSNKNPILDIQTNVAP-TVQLLEACAAAGIGKI 108
Query: 192 IYSSTCAT-YGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNV 250
I++S+ T YG PE++PI+E P PI+ YG +K E + + + +LR
Sbjct: 109 IFASSGGTVYGVPEQLPISESDPTLPISSYGISKLAIEKYLRLYQYLYGLDYTVLRI--- 165
Query: 251 IGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310
S+P G RP+ + G I A RG +++ G DG +RDYI ++
Sbjct: 166 --SNP---YGPGQRPD-GKQGVIPIALNKILRGEP--IEIWG------DGESIRDYIYID 211
Query: 311 DLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAE 370
DLV+A + L ++N+G+G G S+ E + +K T +++VIY P R D +
Sbjct: 212 DLVEALMALLRSK--GLEEVFNIGSGIGYSLAELIAEIEKVTGRSVQVIYTPARTTDVPK 269
Query: 371 VYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
+ D ++ R EL W+ K +L++ LE W+W
Sbjct: 270 IVLDISRARAELGWSPK-ISLEDGLEKTWQW 299
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 4e-39
Identities = 109/348 (31%), Positives = 167/348 (47%), Gaps = 46/348 (13%)
Query: 71 THVLVTGGAGYIGSHAALRLLK--DSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIY 128
+LVTGGAG+IGS+ LL Y++ +D L+ G ++ L+++ P R +F+
Sbjct: 1 MKILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLTYA--GNLENLEDVSSSP-RYRFVK 57
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN---TLVVLESMAR 185
D+ DA+ V++ F E DAV+HFAA ++V S DP + I +N T +LE+ +
Sbjct: 58 GDICDAELVDRLFEEEKIDAVIHFAAESHVDRSISDPEPF---IRTNVLGTYTLLEAARK 114
Query: 186 HGVDTLIYSSTCATYGE-PEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMI 244
+GV ++ ST YG+ + TE +P AP +PY +K A+ ++ + + + V+I
Sbjct: 115 YGVKRFVHISTDEVYGDLLDDGEFTETSPLAPTSPYSASKAAADLLVRAYHRTYGLPVVI 174
Query: 245 LRYFNVIGSDPEGRLGEAPR--PE-LREHGRISGACFDAARGIIAGLKVKGTDYSTADGT 301
R N G P PE L I +A G L + G DG
Sbjct: 175 TRCSNNYG----------PYQFPEKL-----IPLFILNALDGK--PLPIYG------DGL 211
Query: 302 CVRDYIDVNDLVDAHVKALERAQPK-KVG-IYNVGTGKGRSVKEFVEACKKATSANIKVI 359
VRD++ V D H +A+E K +VG IYN+G G + E V+ + + +I
Sbjct: 212 NVRDWLYVED----HARAIELVLEKGRVGEIYNIGGGNELTNLELVKLILELLGKDESLI 267
Query: 360 -YEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHR 406
Y RPG D +KIR EL W K + +E L RW +R
Sbjct: 268 TYVKDRPGHDRRYAIDSSKIRRELGWRPKVS-FEEGLRKTVRWYLENR 314
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 1e-37
Identities = 91/335 (27%), Positives = 146/335 (43%), Gaps = 37/335 (11%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
L+TG G GS+ A LL+ Y V IV S N + L+ R+ Y DL
Sbjct: 2 ALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTD---RIDHLYINKDRITLHYGDL 58
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
D+ ++ + + D + H AA ++V S DP TL +LE++ G+D
Sbjct: 59 TDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTLNLLEAIRILGLDAR 118
Query: 192 IY-SSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNV 250
Y +S+ YG+ +++P +E TP P +PY +K A+ I ++ + + + R FN
Sbjct: 119 FYQASSSEEYGKVQELPQSETTPFRPRSPYAVSKLYADWITRNYREAYGLFAVNGRLFNH 178
Query: 251 IGSDPEGRLGEAPRPELREHGRISGACFDAARGI---IAGLKVKGTDY-STADGTCVRDY 306
G PR G F R I +A +K + RD+
Sbjct: 179 EG----------PRR---------GETF-VTRKITRQVARIKAGLQPVLKLGNLDAKRDW 218
Query: 307 IDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYE--PR- 363
D D V+A+ L++ +P Y + TG+ SV+EFVE + + + E PR
Sbjct: 219 GDARDYVEAYWLLLQQGEP---DDYVIATGETHSVREFVELAFEESGLTGDIEVEIDPRY 275
Query: 364 -RPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEI 397
RP + + DP+K R EL W + + +E +
Sbjct: 276 FRPTEVDLLLGDPSKAREELGWKPEVS-FEELVRE 309
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 3e-36
Identities = 92/343 (26%), Positives = 141/343 (41%), Gaps = 40/343 (11%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
+VLVTG G+IGSH RLL++ + V +D + N R FI D+
Sbjct: 1 NVLVTGADGFIGSHLTERLLREGHEVRALDIYNSFN----SWGLLDNAVHDRFHFISGDV 56
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
DA V + D V H AA+ + S PL Y TL VLE+ +
Sbjct: 57 RDASEVEYLVKKC--DVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYRKRV 114
Query: 192 IYSSTCATYGEPEKMPITEETPQAPIN----PYGKAKKMAEDIILDFSKNSDMAVMILRY 247
+++ST YG + +PI E+ P IN PY +K+ A+ + + ++ + V I+R
Sbjct: 115 VHTSTSEVYGTAQDVPIDEDHPLLYINKPRSPYSASKQGADRLAYSYGRSFGLPVTIIRP 174
Query: 248 FNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307
FN G PR R + + +I DG+ RD+
Sbjct: 175 FNTYG----------PRQSARAVIPTIISQRAIGQRLIN----------LGDGSPTRDFN 214
Query: 308 DVNDLVDAHVKALERAQPKKVG-IYNVGTGKGRSVKEF-VEACKKATSANIKVIYEPRRP 365
V D + L+ + VG I N G+G+ S+ VE + + ++Y+ R
Sbjct: 215 FVKDTARGFIDILDAI--EAVGEIINNGSGEEISIGNPAVELIVEELGEMVLIVYDDHRE 272
Query: 366 --GDYAEVYS---DPTKIRLELNWTAKYTNLQESLEIAWRWQK 403
Y+EV D K + L W KY+ L++ L W K
Sbjct: 273 YRPGYSEVERRIPDIRKAKRLLGWEPKYS-LRDGLRETIEWFK 314
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-32
Identities = 93/340 (27%), Positives = 142/340 (41%), Gaps = 51/340 (15%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VL+TGGAG IGSH LL+ ++V ++DN + G +E P+ L + +
Sbjct: 3 VLITGGAGQIGSHLIEHLLERGHQVVVIDNFATGR-------REHLPDHPNLTVVEGSIA 55
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN---TLVVLESMARHGVD 189
D V+K F + DAV+H A AY DP +Y + +N V+++ + GV
Sbjct: 56 DKALVDKLFGDFKPDAVVH-TAAAYK-----DPDDWYEDTLTNVVGGANVVQAAKKAGVK 109
Query: 190 TLIYSSTCATYG-EPEKMPITEETPQAPIN-PYGKAKKMAEDIILDFSKNSDMAVMILRY 247
LIY T YG +P + PI + P+AP Y +K E + S + + R
Sbjct: 110 RLIYFQTALCYGLKPMQQPIRLDHPRAPPGSSYAISKTAGEYYLE----LSGVDFVTFRL 165
Query: 248 FNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307
NV G R P P + + CF V T RD++
Sbjct: 166 ANVTGP----RNVIGPLPTFYQRLKAGKKCF-----------VTDT---------RRDFV 201
Query: 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANI--KVIYEPRRP 365
V DL KAL+ + G Y+ +G+ S+KE +A +A + +V P
Sbjct: 202 FVKDLARVVDKALDGIRGH--GAYHFSSGEDVSIKELFDAVVEALDLPLRPEVEVVELGP 259
Query: 366 GDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
D + DP++ + W T L E++ A W H
Sbjct: 260 DDVPSILLDPSRTFQDFGWKEF-TPLSETVSAALAWYDKH 298
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-31
Identities = 93/334 (27%), Positives = 139/334 (41%), Gaps = 42/334 (12%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
++VTGGAG+IGS+ L + + +VDNLS G V ++ + F
Sbjct: 2 IIVTGGAGFIGSNLVKALNERGITDILVVDNLSNGEKFKNLVGLKIADYIDKDDFK---- 57
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYY---HNITSNTLVVLESMARHGV 188
V K +A+ H A + T + Y +N T +L +
Sbjct: 58 ---DWVRKGDENFKIEAIFHQGACS----DTTETDGKYMMDNNYQY-TKELLHYCLEKKI 109
Query: 189 DTLIYSSTCATYG--EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILR 246
IY+S+ A YG E P+N YG +K + + K V+ LR
Sbjct: 110 -RFIYASSAAVYGNGSLGFAEDIETPNLRPLNVYGYSKLLFDQWARRHGKEVLSQVVGLR 168
Query: 247 YFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK--GTDYSTADGTCVR 304
YFNV G P GR++ F I AG KVK + ADG +R
Sbjct: 169 YFNVYG------------PREYHKGRMASVVFHLFNQIKAGEKVKLFKSSDGYADGEQLR 216
Query: 305 DYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRR 364
D++ V D+V ++ LE P GI+NVGTG+ RS + A KA +K+ Y
Sbjct: 217 DFVYVKDVVKVNLFFLEN--PSVSGIFNVGTGRARSFNDLASATFKALGKEVKIEYID-F 273
Query: 365 PGDYAEVY-----SDPTKIRLELNWTAKYTNLQE 393
P D Y +D +K+R +T ++ +L+E
Sbjct: 274 PEDLRGKYQSFTEADISKLR-AAGYTKEFHSLEE 306
|
This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-31
Identities = 99/344 (28%), Positives = 155/344 (45%), Gaps = 41/344 (11%)
Query: 73 VLVTGGAGYIGS---HAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYA 129
+LVTGGAG+IGS L D V ++D L+ G ++ L +L P R +F+
Sbjct: 2 ILVTGGAGFIGSNFVRYILNEHPD-AEVIVLDKLTYA--GNLENLADLEDNP-RYRFVKG 57
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD 189
D+GD + V++ F+E+ DAV+HFAA ++V S P + T +LE++ ++ +
Sbjct: 58 DIGDRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHE 117
Query: 190 T-LIYSSTCATYGEPEK-MPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRY 247
+ ST YG+ EK TE TP AP +PY +K ++ ++ + + + +I R
Sbjct: 118 FRFHHISTDEVYGDLEKGDAFTETTPLAPSSPYSASKAASDHLVRAYHRTYGLPALITRC 177
Query: 248 FNVIG--SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRD 305
N G PE + P +AG + DG VRD
Sbjct: 178 SNNYGPYQFPEKLI---PLMITN---------------ALAGKPLP----VYGDGQQVRD 215
Query: 306 YIDVNDLVDAHVKALERAQPK-KVG-IYNVGTGKGRSVKEFVEA-CKKATSANIKVIYEP 362
++ V D H +A+ K +VG YN+G G R+ E VE + + +
Sbjct: 216 WLYVED----HCRAIYLVLEKGRVGETYNIGGGNERTNLEVVETILELLGKDEDLITHVE 271
Query: 363 RRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHR 406
RPG D +KI+ EL W KYT +E L +W +
Sbjct: 272 DRPGHDRRYAIDASKIKRELGWAPKYT-FEEGLRKTVQWYLDNE 314
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-30
Identities = 81/305 (26%), Positives = 128/305 (41%), Gaps = 51/305 (16%)
Query: 73 VLVTGGAGYIGSHAALRL----LKDSYRVTIVDNLSRG--NIGAVKVLQELFPEPGRLQF 126
++VTGGAG+IGS+ L + D + +VDNL G +
Sbjct: 1 IIVTGGAGFIGSNLVKALNERGITD---ILVVDNLRDGHKFLNLAD------------LV 45
Query: 127 IYADLGDAKAVNKFFSENA--FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMA 184
I + +++ +A+ H A + E D N + +L+ A
Sbjct: 46 IADYIDKEDFLDRLEKGAFGKIEAIFHQGACSDTTE--TDGEYMMENNYQYSKRLLDWCA 103
Query: 185 RHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILD--FSKNSDMAV 242
G+ IY+S+ ATYG+ E + P+N YG +K + + + + V
Sbjct: 104 EKGI-PFIYASSAATYGDGEAGFREGRELERPLNVYGYSKFLFDQYVRRRVLPEALSAQV 162
Query: 243 MILRYFNVIGSDPEGRLGEAPRPELREH-GRISGACFDAARGIIAGLKVK----GTDYST 297
+ LRYFNV G PR H G+++ F I AG VK +
Sbjct: 163 VGLRYFNVYG----------PR---EYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGF-- 207
Query: 298 ADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIK 357
DG +RD++ V D+VD ++ LE GI+N+GTG+ RS + +A KA + K
Sbjct: 208 KDGEQLRDFVYVKDVVDVNLWLLEN---GVSGIFNLGTGRARSFNDLADAVFKALGKDEK 264
Query: 358 VIYEP 362
+ Y P
Sbjct: 265 IEYIP 269
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 7e-30
Identities = 87/336 (25%), Positives = 141/336 (41%), Gaps = 44/336 (13%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+TGGAG++GSH RLL+D + V VDN G + ++ L P +FI D+
Sbjct: 3 ILITGGAGFLGSHLCDRLLEDGHEVICVDNFFTGRK---RNIEHLIGHP-NFEFIRHDVT 58
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ D + H A A +P+K TL +L R G ++
Sbjct: 59 E-------PLYLEVDQIYHLACPASPVHYQYNPIKTLKTNVLGTLNMLGLAKRVGA-RVL 110
Query: 193 YSSTCATYGEPEKMPITEE-----TPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRY 247
+ST YG+PE P E P P + Y + K++AE + + + + + V I R
Sbjct: 111 LASTSEVYGDPEVHPQPESYWGNVNPIGPRSCYDEGKRVAETLCMAYHRQHGVDVRIARI 170
Query: 248 FNVIGSDPEGRLGEAPRPELRE-HGRISGACFDAARGIIAGLKVKGTDYS-TADGTCVRD 305
FN G P + GR+ + I+ L +G + DGT R
Sbjct: 171 FNTYG------------PRMHPNDGRV------VSNFIVQAL--RGEPITVYGDGTQTRS 210
Query: 306 YIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRP 365
+ V+DLV+ ++ + G N+G + ++ E E KK T + ++++ P
Sbjct: 211 FQYVSDLVEGLIRLM--NSDYFGGPVNLGNPEEFTILELAELVKKLTGSKSEIVFLPLPE 268
Query: 366 GDYAEVYSDPTKIRLELNWTAKYTNLQESLE--IAW 399
D D +K + L W K L+E L I +
Sbjct: 269 DDPKRRRPDISKAKELLGWEPK-VPLEEGLRRTIEY 303
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-28
Identities = 93/357 (26%), Positives = 151/357 (42%), Gaps = 62/357 (17%)
Query: 73 VLVTGGAGYIGSHAALRLLK--DSYRVTIVDNLS-RGNIGAVKVLQELFPEPGRLQFIYA 129
+LVTGGAG+IGS+ +L V +D L+ GN+ + +++ R +F+
Sbjct: 3 ILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDS----PRYRFVQG 58
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN---TLVVLESMARH 186
D+ D + V++ F E DAV+HFAA ++V S P + I +N T +LE+ ++
Sbjct: 59 DICDRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPF---IQTNVVGTYTLLEAARKY 115
Query: 187 GVDT-LIYSSTCATYGEPEK--MPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVM 243
+ ST YG+ TE TP P +PY +K ++ ++ + + +
Sbjct: 116 WGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASDLLVRAYVRTYGLPAT 175
Query: 244 ILRYFNVIG--SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK--GTDYSTAD 299
I R N G PE + P + + G + G D
Sbjct: 176 ITRCSNNYGPYQFPEKLI---PLMIIN---------------ALLGKPLPVYG------D 211
Query: 300 GTCVRDYIDVNDLVDAHVKALERAQPK-KVG-IYNVGTGKGRSVKEFVEA-C----KKAT 352
G +RD++ V D H +A++ K K+G YN+G G R+ E V+ C K
Sbjct: 212 GLQIRDWLYVED----HCRAIDLVLTKGKIGETYNIGGGNERTNLEVVKTICELLGKDKP 267
Query: 353 SANIKVIYEPRRPGD---YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHR 406
+ + RPG YA D +KI+ EL W + T + L W +
Sbjct: 268 DYRDLITFVEDRPGHDRRYA---IDASKIKRELGWRPQET-FETGLRKTVDWYLDNE 320
|
Length = 340 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-28
Identities = 89/368 (24%), Positives = 152/368 (41%), Gaps = 73/368 (19%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR----GNIGAVKVLQELFPEPGRLQFIY 128
VL+TGGAG+IGS+ A LK + V DNL R GN+ +K +E G ++F++
Sbjct: 3 VLITGGAGFIGSNLARFFLKQGWEVIGFDNLMRRGSFGNLAWLKANRED----GGVRFVH 58
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN---TLVVLESMAR 185
D+ + + F + D ++H AA V S P + +N TL VLE+ +
Sbjct: 59 GDIRNRNDLEDLFED--IDLIIHTAAQPSVTTSASSP---RLDFETNALGTLNVLEAARQ 113
Query: 186 HGVDT-LIYSSTCATYG-EPEKMP-------------------ITEETP-QAPINPYGKA 223
H + I++ST YG P +P I+E P + YG +
Sbjct: 114 HAPNAPFIFTSTNKVYGDLPNYLPLEELETRYELAPEGWSPAGISESFPLDFSHSLYGAS 173
Query: 224 KKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAA-- 281
K A+ + ++ + + ++ R G ++G
Sbjct: 174 KGAADQYVQEYGRIFGLKTVVFR-----------------------CGCLTGPRQFGTED 210
Query: 282 RGIIA-----GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTG 336
+G +A + K G VRD + DLV+ +++ + +K ++N+G G
Sbjct: 211 QGWVAYFLKCAVTGKPLTIFGYGGKQVRDVLHSADLVNLYLRQFQNPDRRKGEVFNIGGG 270
Query: 337 KGRSVK--EFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQES 394
+ SV E + C++ T ++ + RPGD SD KI+ + W + + +E
Sbjct: 271 RENSVSLLELIALCEEITGRKMESYKDENRPGDQIWYISDIRKIKEKPGWKPER-DPREI 329
Query: 395 LE--IAWR 400
L AW
Sbjct: 330 LAEIYAWI 337
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-24
Identities = 88/330 (26%), Positives = 143/330 (43%), Gaps = 46/330 (13%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNIGAVKVLQELFPE-PGRLQFIYAD 130
VLVTG G+IGSH L++ Y V V S + G L PE +++ + D
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGW---LDTSPPEVKDKIEVVTGD 57
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH-NITSNTLVVLESMARHGVD 189
+ D +V K + D V H AA+ + S + P Y N+T TL VL++ GV+
Sbjct: 58 IRDPDSVRK--AMKGCDVVFHLAALIAIPYSYIAPDSYVDTNVTG-TLNVLQAARDLGVE 114
Query: 190 TLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFN 249
++++ST YG + +PI E+ P +PY +K A+ + L F ++ + V I+R FN
Sbjct: 115 KVVHTSTSEVYGTAQYVPIDEKHPLQGQSPYSASKIGADQLALSFYRSFNTPVTIIRPFN 174
Query: 250 VIGSDPEGRLGEAPRPELREHGRISGACFDAARG----IIAGLKVKGTDYSTADGTCVRD 305
G PR +AR II + + RD
Sbjct: 175 TYG----------PR--------------QSARAVIPTIITQIASGKRRIKLGSLSPTRD 210
Query: 306 YIDVNDLVDAHVKALERAQPKKVG-IYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR- 363
+ V D V + E K VG + N+G+ S+ + V+ + + +++ +
Sbjct: 211 FNYVTDTVRGFIAIAE--SDKTVGEVINIGSNFEISIGDTVKLIAEIMGSEVEIETDEER 268
Query: 364 -RPGDYAEV---YSDPTKIRLELNWTAKYT 389
RP +EV + D +KI+ W KY+
Sbjct: 269 LRPEK-SEVERLWCDNSKIKELTGWQPKYS 297
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 81/350 (23%), Positives = 136/350 (38%), Gaps = 52/350 (14%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTG G+IGSH A RL + + V D S ++ E F DL
Sbjct: 3 ALVTGAGGFIGSHLAERLKAEGHYVRGADWKSPEHMTQPTDDDE---------FHLVDLR 53
Query: 133 DAKAVNKFFSENAFDAVMHFAA----VAYVGESTLDPLKYYHNITSNTLV---VLESMAR 185
+ + K D V H AA + Y+ + + + +NTL+ +LE+
Sbjct: 54 EMENCLKATEG--VDHVFHLAADMGGMGYIQSN------HAVIMYNNTLINFNMLEAARI 105
Query: 186 HGVDTLIYSSTCATYG-----EPEKMPITEE--TPQAPINPYGKAKKMAEDIILDFSKNS 238
+GV+ +++S+ Y E + + EE P P + YG K E + ++++
Sbjct: 106 NGVERFLFASSACVYPEFKQLETTVVRLREEDAWPAEPQDAYGWEKLATERLCQHYNEDY 165
Query: 239 DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST- 297
+ I+R+ N+ G PR G A R + K D
Sbjct: 166 GIETRIVRFHNIYG----------PRGTW--DGGREKAPAAMCRKVATA---KDGDRFEI 210
Query: 298 -ADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANI 356
DG R + ++D V+ + +E + V N+G+ + S+ E E + +
Sbjct: 211 WGDGLQTRSFTYIDDCVEGLRRLMESDFGEPV---NLGSDEMVSMNELAEMVLSFSGKPL 267
Query: 357 KVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHR 406
++I+ P SD T ++ EL W L+E L I + W K
Sbjct: 268 EIIHHTPGPQGVRGRNSDNTLLKEELGWEPNTP-LEEGLRITYFWIKEQI 316
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 3e-21
Identities = 87/352 (24%), Positives = 128/352 (36%), Gaps = 76/352 (21%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTG G+IG +LL V I AV+ + P A+L
Sbjct: 2 VLVTGANGFIGRALVDKLLSRGEEVRI----------AVRNAENAEPSVVL-----AELP 46
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYV-GESTLDPLKYYHNI-TSNTLVVLESMARHGVDT 190
D + F DAV+H AA +V + DPL Y + T T + + AR GV
Sbjct: 47 DIDSFTDLFLG--VDAVVHLAARVHVMNDQGADPLSDYRKVNTELTRRLARAAARQGVKR 104
Query: 191 LIYSSTCATYGEP-EKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFN 249
++ S+ GE P E P AP + YG++K AE +L+ + M V+ILR
Sbjct: 105 FVFLSSVKVNGEGTVGAPFDETDPPAPQDAYGRSKLEAERALLELGASDGMEVVILRPPM 164
Query: 250 VIGSDPEG---RLGEA-----PRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGT 301
V G G RL P P R
Sbjct: 165 VYGPGVRGNFARLMRLIDRGLPLPPGAVKNR----------------------------- 195
Query: 302 CVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYE 361
R + +++LVDA + + G + V G S E V+ ++A +++
Sbjct: 196 --RSLVSLDNLVDAIYLCISLPKAAN-GTFLVSDGPPVSTAELVDEIRRALGKPTRLLPV 252
Query: 362 P--------RRPGDYAEVYS-------DPTKIRLELNWTAKYTNLQESLEIA 398
P + G A + DP K + EL W + L+E L+
Sbjct: 253 PAGLLRFAAKLLGKRAVIQRLFGSLQYDPEKTQNELGWRPPIS-LEEGLQET 303
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 4e-21
Identities = 90/342 (26%), Positives = 138/342 (40%), Gaps = 47/342 (13%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
L+TG G GS+ A LL+ Y V I S N + + ++ RL Y DL
Sbjct: 6 LITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLT 65
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH--GVDT 190
D+ + + E D + + AA ++VG S P TL +LE++ R T
Sbjct: 66 DSSNLLRILEEVQPDEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAI-RILGEKKT 124
Query: 191 LIYS-STCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFN 249
Y ST YG +++P E TP P +PY AK A I +++ ++ + FN
Sbjct: 125 RFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGLFACNGILFN 184
Query: 250 VIGSDPEGRLGEAP-RPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308
E+P R E +I+ A G+ L + D RD+
Sbjct: 185 ----------HESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLD-------AKRDWGH 227
Query: 309 VNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEAC-------------------K 349
D V+A L++ +P Y + TG+ SV+EFVE
Sbjct: 228 AKDYVEAMWLMLQQEEPDD---YVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGV 284
Query: 350 KATSANIKVIYEPR--RPGDYAEVYSDPTKIRLELNWTAKYT 389
A + I V +PR RP + + DPTK + +L W + +
Sbjct: 285 DAKTGKIIVEIDPRYFRPAEVDLLLGDPTKAKEKLGWRPEVS 326
|
Length = 345 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 5e-21
Identities = 93/347 (26%), Positives = 153/347 (44%), Gaps = 47/347 (13%)
Query: 73 VLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNIGAVKVLQELFPEPG--RLQFIY 128
+L+TG AG+I SH A RL+++ Y++ ++D L L+ L P +F+
Sbjct: 9 ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDY-----CSNLKNLNPSKSSPNFKFVK 63
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG- 187
D+ A VN D +MHFAA +V S + ++ N T V+LE+ G
Sbjct: 64 GDIASADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQ 123
Query: 188 VDTLIYSSTCATYGEPEKMPIT---EETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMI 244
+ I+ ST YGE ++ E + P NPY K AE +++ + ++ + V+
Sbjct: 124 IRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIT 183
Query: 245 LRYFNVIGSD--PEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTC 302
R NV G + PE + P+ L A +G L + G DG+
Sbjct: 184 TRGNNVYGPNQFPEKLI---PKFILL-----------AMQG--KPLPIHG------DGSN 221
Query: 303 VRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSV----KEFVEACKKATSANIKV 358
VR Y+ D+ +A L + + V YN+GT K R V K+ + +IK
Sbjct: 222 VRSYLYCEDVAEAFEVVLHKGEVGHV--YNIGTKKERRVIDVAKDICKLFGLDPEKSIKF 279
Query: 359 IYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
+ RP + + D K++ +L W + T+ +E L+ W S+
Sbjct: 280 VEN--RPFNDQRYFLDDQKLK-KLGWQER-TSWEEGLKKTMEWYTSN 322
|
Length = 668 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-20
Identities = 68/286 (23%), Positives = 108/286 (37%), Gaps = 73/286 (25%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNIGAVKVLQELFPE---PGRLQFIY 128
VLVTG G+I SH +LLK Y+V V +LS+ L+ L RL+F+
Sbjct: 2 VLVTGATGFIASHIVEQLLKAGYKVRGTVRSLSK-----SAKLKALLKAAGYNDRLEFVI 56
Query: 129 ADLGDAKAVNKFFSENAFD-------AVMHFA-AVAYVG----ESTLDPLKYYHNITSNT 176
D + NA+D V+H A + G + +DP T N
Sbjct: 57 VDD--------LTAPNAWDEALKGVDYVIHVASPFPFTGPDAEDDVIDPAV---EGTLN- 104
Query: 177 LVVLESMARHG-VDTLIYSSTCA----TYGEPEKMPITEE-------TPQAPINPYGKAK 224
VLE+ G V ++ +S+ A E TEE + ++ Y +K
Sbjct: 105 --VLEAAKAAGSVKRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLTISKSNGLDAYIASK 162
Query: 225 KMAEDIILDFSKNS----DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDA 280
+AE +F K + ++ + Y V+G ++ +
Sbjct: 163 TLAEKAAWEFVKENKPKFELITINPGY--VLG-------------PSLLADELNSSN--- 204
Query: 281 ARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK 326
+I L + G + Y+DV D+ DAHV+ALE +
Sbjct: 205 --ELINKL-LDGKLPAIPPNLPF-GYVDVRDVADAHVRALESPEAA 246
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 5e-19
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 21/186 (11%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQEL---FPEPGRLQFIYA 129
+LVTGGAG IGS ++LK + IV R ++++EL FP +L+FI
Sbjct: 5 ILVTGGAGSIGSELVRQILKFGPKKLIV--FDRDENKLHELVRELRSRFPHD-KLRFIIG 61
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD 189
D+ D + + + F E D V H AA+ +V +P + T V+++ +GV+
Sbjct: 62 DVRDKERLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKTNVLGTKNVIDAAIENGVE 121
Query: 190 TLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN-SDMAVMILRYF 248
+ ST + P+N G K++AE ++L ++ S +R+
Sbjct: 122 KFVCIST--------------DKAVNPVNVMGATKRVAEKLLLAKNEYSSSTKFSTVRFG 167
Query: 249 NVIGSD 254
NV+GS
Sbjct: 168 NVLGSR 173
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 62/256 (24%), Positives = 98/256 (38%), Gaps = 40/256 (15%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+LVTG G++GS+ LL YRV L R + L P ++ + DL
Sbjct: 1 ILVTGATGFLGSNLVRALLAQGYRVRA---LVR----SGSDAVLLDGLP--VEVVEGDLT 51
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
DA ++ D V H AA D + Y T VL++ GV ++
Sbjct: 52 DAASLAAAMKG--CDRVFHLAAFTS--LWAKDRKELYRTNVEGTRNVLDAALEAGVRRVV 107
Query: 193 YSSTCATYGEPEKMPITEETPQAPI---NPYGKAKKMAEDIILDFSKNSDMAVMILRYFN 249
++S+ A G P I E TP N Y ++K +AE +L+ + + V+I+
Sbjct: 108 HTSSIAALGGPPDGRIDETTPWNERPFPNDYYRSKLLAELEVLEAAAE-GLDVVIVNPSA 166
Query: 250 VIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309
V G EG D G + GT ++DV
Sbjct: 167 VFGPGDEGP---TSTGLDV---------LDYLNGKLPAYPPGGT-----------SFVDV 203
Query: 310 NDLVDAHVKALERAQP 325
D+ + H+ A+E+ +
Sbjct: 204 RDVAEGHIAAMEKGRR 219
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 1e-18
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 19/169 (11%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIY 128
VL+TG +G++G A RLL D R+ ++D V+ P R+ I
Sbjct: 2 KVLITGASGFVGQRLAERLLSDVPNERLILID-----------VVSPKAPSGAPRVTQIA 50
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH-NITSNTLVVLESMARHG 187
DL + + D V H AA+ G + D Y N+ T +LE++ ++G
Sbjct: 51 GDLAVPALIEALANGRP-DVVFHLAAI-VSGGAEADFDLGYRVNVDG-TRNLLEALRKNG 107
Query: 188 VDT-LIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFS 235
+++S+ A YG P P+T+ T P + YG K M E ++ D+S
Sbjct: 108 PKPRFVFTSSLAVYGLPLPNPVTDHTALDPASSYGAQKAMCELLLNDYS 156
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 86.6 bits (214), Expect = 2e-18
Identities = 91/332 (27%), Positives = 140/332 (42%), Gaps = 47/332 (14%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
++VTGGAG++GSH +L+ V ++DN G + L LF P R + I D+
Sbjct: 123 IVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGR---KENLVHLFGNP-RFELIRHDV- 177
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
V E D + H A A +P+K TL +L R G L+
Sbjct: 178 ----VEPILLE--VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLL 231
Query: 193 YSSTCATYGEPEKMPITEETPQAPINP------YGKAKKMAEDIILDFSKNSDMAVMILR 246
+ST YG+P + P +ET +NP Y + K+ AE + +D+ + + + V I R
Sbjct: 232 -TSTSEVYGDPLEHP-QKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIAR 289
Query: 247 YFNVIGSDPEGRLGEAPRPELREHGRISGACFDAAR---GIIAGLKVKGTDYSTADGTCV 303
FN G PR C D R +A K DG
Sbjct: 290 IFNTYG----------PR-----------MCLDDGRVVSNFVAQTIRKQPMTVYGDGKQT 328
Query: 304 RDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR 363
R + V+DLVD V +E + VG +N+G ++ E E K+ ++ + ++P
Sbjct: 329 RSFQYVSDLVDGLVALMEG---EHVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPN 385
Query: 364 RPGDYAEVYSDPTKIRLELNWTAKYTNLQESL 395
D + D +K + LNW K + L+E L
Sbjct: 386 TADDPHKRKPDISKAKELLNWEPKIS-LREGL 416
|
Length = 436 |
| >gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Score = 84.4 bits (208), Expect = 5e-18
Identities = 92/354 (25%), Positives = 154/354 (43%), Gaps = 39/354 (11%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG---NIGAVK--VLQELFPEPGRLQFIY 128
L+TG AG+IGS LL + V +DN S G N+ V+ V +E + R FI
Sbjct: 19 LITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQW---SRFIFIQ 75
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV 188
D+ K + D V+H AA+ V S DP+ L +L + V
Sbjct: 76 GDIRKFTDCQK--ACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHV 133
Query: 189 DTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYF 248
+ Y+++ +TYG+ +P EE P++PY K + E F+++ + + LRYF
Sbjct: 134 SSFTYAASSSTYGDHPDLPKIEERIGRPLSPYAVTKYVNELYADVFARSYEFNAIGLRYF 193
Query: 249 NVIG--SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306
NV G +P G R I++ LK + Y DG+ RD+
Sbjct: 194 NVFGRRQNPNGAYSAV-----------------IPRWILSLLKDEPI-YINGDGSTSRDF 235
Query: 307 IDVNDLVDAH-VKALERAQPKKVGIYNVGTGKGRSVKEFVEACK------KATSANIKVI 359
+ +++ A+ + A K +YNV G S+ E + + + + I
Sbjct: 236 CYIENVIQANLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPI 295
Query: 360 YEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQ-KSHRGGYASI 412
Y+ R GD +D TKI+ L++ ++ +++E L+ +W H Y+S+
Sbjct: 296 YKDFRDGDVKHSQADITKIKTFLSYEPEF-DIKEGLKQTLKWYIDKHSTLYSSV 348
|
Length = 348 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 1e-17
Identities = 67/302 (22%), Positives = 111/302 (36%), Gaps = 66/302 (21%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+ GG +IG LL + VT+ +RG P ++ I D
Sbjct: 3 ILIIGGTRFIGKALVEELLAAGHDVTV---FNRGRTKP--------DLPEGVEHIVGDRN 51
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D A+ + FD V+ +AY L++ V I
Sbjct: 52 DRDALEELLGGEDFDVVVDT--IAYTPRQVER--------------ALDAFKGR-VKQYI 94
Query: 193 YSSTCATYGEPEKMPITEETP--------QAPINPYGKAKKMAEDIILDFSKNSDMAVMI 244
+ S+ + Y +P + ITE TP + YG+ K+ AED++++ + I
Sbjct: 95 FISSASVYLKPGR-VITESTPLREPDAVGLSDPWDYGRGKRAAEDVLIEAAA---FPYTI 150
Query: 245 LRYFNVIGS-DPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCV 303
+R + G D GRL L I ++ G DG +
Sbjct: 151 VRPPYIYGPGDYTGRLAYFFD-RLARGRPI----------LVPG-----------DGHSL 188
Query: 304 RDYIDVNDLVDAHVKALERAQPKKVG-IYNVGTGKGRSVKEFVEACKKATSANIKVIYEP 362
+I V DL A + A PK +G I+N+ + + E +EAC KA ++++
Sbjct: 189 VQFIHVKDLARALLGAAGN--PKAIGGIFNITGDEAVTWDELLEACAKALGKEAEIVHVE 246
Query: 363 RR 364
Sbjct: 247 ED 248
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 8e-17
Identities = 80/361 (22%), Positives = 133/361 (36%), Gaps = 96/361 (26%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+LVTG G +GS L + Y + + +EL DL
Sbjct: 2 ILVTGHRGLVGSAIVRVLARRGYENVVF--RTS---------KEL------------DLT 38
Query: 133 DAKAVNKFFSENAFDAVMHFAA-VAYVGESTLDPLKYYHNITSNTLV---VLESMARHGV 188
D +AV FF + D V+H AA V + + P + + N L+ V+ + R GV
Sbjct: 39 DQEAVRAFFEKEKPDYVIHLAAKVGGIVANMTYPADFLRD---NLLINDNVIHAAHRFGV 95
Query: 189 DTLIY-SSTCATYGEPEKMPITEET----PQAPIN-PYGKAKKMAEDIILDFSKNSDMAV 242
L++ S+C Y + PI E P P N Y AK+
Sbjct: 96 KKLVFLGSSC-IYPDLAPQPIDESDLLTGPPEPTNEGYAIAKRA-------------GLK 141
Query: 243 MILRYFNVIGSDPEGRLGEAPRPELREHGRISGAC-----------FDAARG-IIAGL-- 288
+ + +++G + FD +I L
Sbjct: 142 L-CEAYR------------------KQYGCDYISVMPTNLYGPHDNFDPENSHVIPALIR 182
Query: 289 -----KVKGTDYSTA--DGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSV 341
K++G T GT R+++ +DL A V LE + I NVG+G S+
Sbjct: 183 KFHEAKLRGGKEVTVWGSGTPRREFLYSDDLARAIVFLLE--NYDEPIIVNVGSGVEISI 240
Query: 342 KEFVEACKKATSANIKVIYEPRRP-GDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWR 400
+E EA + +++++ +P G ++ D +K+R L W T L++ + +
Sbjct: 241 RELAEAIAEVVGFKGEIVFDTSKPDGQPRKLL-DVSKLR-ALGWFPF-TPLEQGIRETYE 297
Query: 401 W 401
W
Sbjct: 298 W 298
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|206121 pfam13950, Epimerase_Csub, UDP-glucose 4-epimerase C-term subunit | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 8e-16
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 350 KATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
KA+ I PRRPGD AE Y+DP+K EL W A+ L++ +WRWQ + GY
Sbjct: 4 KASGKKIPYEIVPRRPGDVAECYADPSKAEKELGWKAERG-LEDMCRDSWRWQSKNPNGY 62
|
This domain is the very C-terminal subunit of UDP-glucose 4-epimerase. Length = 62 |
| >gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Score = 77.3 bits (190), Expect = 2e-15
Identities = 88/321 (27%), Positives = 134/321 (41%), Gaps = 40/321 (12%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V+VTGGAG++GSH RL+ V +VDN G V F P + I D+
Sbjct: 122 VVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENV---MHHFSNP-NFELIRHDV- 176
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
V E D + H A A +P+K TL +L R G L+
Sbjct: 177 ----VEPILLE--VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 230
Query: 193 YSSTCATYGEPEKMPITEETPQAPINP------YGKAKKMAEDIILDFSKNSDMAVMILR 246
+ST YG+P + P ET +NP Y + K+ AE + +D+ + +++ V I R
Sbjct: 231 -TSTSEVYGDPLQHPQV-ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIAR 288
Query: 247 YFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306
FN G PR + + +S A R K T Y DG R +
Sbjct: 289 IFNTYG----------PRMCIDDGRVVSNFVAQALR------KEPLTVY--GDGKQTRSF 330
Query: 307 IDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPG 366
V+DLV+ ++ +E + VG +N+G ++ E + ++ N K+ + P
Sbjct: 331 QFVSDLVEGLMRLME---GEHVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNTED 387
Query: 367 DYAEVYSDPTKIRLELNWTAK 387
D + D TK + L W K
Sbjct: 388 DPHKRKPDITKAKELLGWEPK 408
|
Length = 442 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 4e-13
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 33/192 (17%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAV-KVLQELFPEPGRLQFIYADL 131
VLVTGG G IGS ++LK + + I+ + + + L+E FPE +L+F D+
Sbjct: 253 VLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPEL-KLRFYIGDV 311
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH-------NITSNTLVVLESMA 184
D V + + D V H AA+ +V PL Y+ N+ T V E+
Sbjct: 312 RDRDRVERAMEGHKVDIVFHAAALKHV------PLVEYNPEEAIKTNVLG-TENVAEAAI 364
Query: 185 RHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNS---DMA 241
++GV + ST + P N G K++AE + ++N
Sbjct: 365 KNGVKKFVLIST--------------DKAVNPTNVMGATKRLAEKLFQAANRNVSGTGTR 410
Query: 242 VMILRYFNVIGS 253
++R+ NV+GS
Sbjct: 411 FCVVRFGNVLGS 422
|
Length = 588 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 4e-13
Identities = 65/264 (24%), Positives = 103/264 (39%), Gaps = 54/264 (20%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD 130
VLVTG G++GS LL+ RV + R N+ + V + + D
Sbjct: 3 VLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDV-----------EIVEGD 51
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
L D ++ K + A+ H AA + DP + Y T +L + GV+
Sbjct: 52 LRDPASLRKAVA--GCRALFHVAADYRLW--APDPEEMYAANVEGTRNLLRAALEAGVER 107
Query: 191 LIYSSTCATYGEPEKMPITEETPQAP----INPYGKAKKMAEDIILDFSKNSDMAVMILR 246
++Y+S+ AT G +ET + I Y ++K +AE L+ + + V+I
Sbjct: 108 VVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKFLAEQAALEMAAEKGLPVVI-- 165
Query: 247 YFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII-----AGLKVKGTDYSTADGT 301
V S P G P P GRI D G + GL +
Sbjct: 166 ---VNPSTPIGPRDIKPTPT----GRI---IVDFLNGKMPAYVDTGLNL----------- 204
Query: 302 CVRDYIDVNDLVDAHVKALERAQP 325
+ V+D+ + H+ ALER +
Sbjct: 205 -----VHVDDVAEGHLLALERGRI 223
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 4e-13
Identities = 94/363 (25%), Positives = 153/363 (42%), Gaps = 72/363 (19%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-RGNIGAVKVLQELFPEPGRLQFIYAD 130
+LVTGGAG+IGS ++ ++ V VD L+ GN+ ++ + + R F +AD
Sbjct: 3 ILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSD----SERYVFEHAD 58
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ D +++ F+++ DAVMH AA ++V S P + T V+LE+ AR+
Sbjct: 59 ICDRAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEA-ARNYWSA 117
Query: 191 LI----------YSSTCATYGE---------PEKMPI-TEETPQAPINPYGKAKKMAEDI 230
L + ST YG+ E++P+ TE T AP +PY +K ++ +
Sbjct: 118 LDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETTAYAPSSPYSASKASSDHL 177
Query: 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290
+ + + + ++ N G P I +A G L +
Sbjct: 178 VRAWLRTYGLPTIVTNCSNNYG------------PYHFPEKLIPLVILNALEG--KPLPI 223
Query: 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK-KVG-IYNVGTGKGRSVKEFVEAC 348
G G +RD++ V D H +AL + + K G YN+G G + K+ ++
Sbjct: 224 YGK------GDQIRDWLYVED----HARALYKVVTEGKAGETYNIG---GHNEKKNLDVV 270
Query: 349 K-----------KATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEI 397
KATS ++ Y RPG D +KI EL W QE+ E
Sbjct: 271 LTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDASKISRELGWKP-----QETFES 325
Query: 398 AWR 400
R
Sbjct: 326 GIR 328
|
Length = 352 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+LVTG AG +G R L S RV VD L R P +++++ D+
Sbjct: 1 ILVTGAAGGLG-RLLARRLAASPRVIGVDGLDRRRPP---------GSPPKVEYVRLDIR 50
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D A + F E DAV+H A + + ++ N+ T VL++ A GV ++
Sbjct: 51 DPAAADV-FREREADAVVHLAFI--LDPPRDGAERHRINVDG-TQNVLDACAAAGVPRVV 106
Query: 193 YSSTCATYG--EPEKMPITEETP--QAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRY 247
+S+ A YG P+TE+ P +P Y + K E ++ +F + + ++ V +LR
Sbjct: 107 VTSSVAVYGAHPDNPAPLTEDAPLRGSPEFAYSRDKAEVEQLLAEFRRRHPELNVTVLRP 166
Query: 248 FNVIG 252
++G
Sbjct: 167 ATILG 171
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 3e-12
Identities = 95/358 (26%), Positives = 142/358 (39%), Gaps = 66/358 (18%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-RGNIGAVKVLQELFP--EPGRLQFIY 128
+L+TGGAG+IGS ++ ++ V +VD L+ GN L L P + R F
Sbjct: 4 ILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGN------LMSLAPVAQSERFAFEK 57
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV 188
D+ D + + F+E+ D VMH AA ++V S P + T +LE+ AR
Sbjct: 58 VDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEA-ARAYW 116
Query: 189 DTLI----------YSSTCATYGEPEKMP--ITEETPQAPINPYGKAKKMAEDIILDFSK 236
+ L + ST YG+ TE TP AP +PY +K ++ ++ + +
Sbjct: 117 NALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLR 176
Query: 237 NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYS 296
+ +I N G P I +A G L V G
Sbjct: 177 TYGLPTLITNCSNNYG------------PYHFPEKLIPLMILNALAG--KPLPVYG---- 218
Query: 297 TADGTCVRDYIDVNDLVDAHVKALER-AQPKKVG-IYNVGTGKGRSVKEFVEAC------ 348
+G +RD++ V D H +AL A KVG YN+G R + VE
Sbjct: 219 --NGQQIRDWLYVED----HARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEE 272
Query: 349 ----KKATSANIK--VIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWR 400
K A+ + + + RPG D +KI EL W QE+ E R
Sbjct: 273 LAPNKPQGVAHYRDLITFVADRPGHDLRYAIDASKIARELGWLP-----QETFESGMR 325
|
Length = 355 |
| >gnl|CDD|178259 PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 5e-12
Identities = 85/329 (25%), Positives = 134/329 (40%), Gaps = 39/329 (11%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNIGAVK-VLQELFPEPGRLQFIYADL 131
L+TG G GS+ LL Y V I+ S N + + + P R++ Y DL
Sbjct: 10 LITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDL 69
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
DA ++ ++ + D V + AA ++V S P + + L +LE++ HG +T
Sbjct: 70 SDASSLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETG 129
Query: 192 IY-----SSTCATYGE-PEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMIL 245
+ + YG P P +E TP P +PY AK A +++ + +
Sbjct: 130 RQIKYYQAGSSEMYGSTPP--PQSETTPFHPRSPYAVAKVAAHWYTVNYREAYGLFACNG 187
Query: 246 RYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK---GTDYSTADGTC 302
FN E+PR R ++ A I GL+ K G ++ D
Sbjct: 188 ILFN----------HESPR---RGENFVTRKITRAVGRIKVGLQKKLFLGNLDASRDWGF 234
Query: 303 VRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIK--VIY 360
DY V+A L++ +P Y V T + +V+EF+E N K V
Sbjct: 235 AGDY------VEAMWLMLQQEKPDD---YVVATEESHTVEEFLEEAFGYVGLNWKDHVEI 285
Query: 361 EPR--RPGDYAEVYSDPTKIRLELNWTAK 387
+PR RP + + D +K R L W K
Sbjct: 286 DPRYFRPAEVDNLKGDASKAREVLGWKPK 314
|
Length = 340 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 2e-11
Identities = 65/279 (23%), Positives = 108/279 (38%), Gaps = 41/279 (14%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
VLVTG +G++ SH +LL+ Y+V V + S + V L +L +PGRL+ ADL
Sbjct: 1 VLVTGASGFVASHVVEQLLERGYKVRATVRDPS--KVKKVNHLLDLDAKPGRLELAVADL 58
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VDT 190
D ++ ++ A V H A V S+ DP + TL L++ A V
Sbjct: 59 TDEQSFDEVIKGCAG--VFHVATP--VSFSSKDPNEVIKPAIGGTLNALKAAAAAKSVKR 114
Query: 191 LIYSSTCATYGEPE---KMPITEE----------TPQAPINPYGKAKKMAEDIILDFSKN 237
+ +S+ + P+ + + +E P+ Y +K +AE F+
Sbjct: 115 FVLTSSAGSVLIPKPNVEGIVLDEKSWNLEEFDSDPKKSAWVYAASKTLAEKAAWKFADE 174
Query: 238 SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST 297
++ ++I P +G E + + G+ L + Y
Sbjct: 175 NN--------IDLITVIPTLTIGTIFDSETPSSSGWAMSLITGNEGVSPALALIPPGY-- 224
Query: 298 ADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTG 336
Y+ V D+ AH+ LE P G Y G
Sbjct: 225 --------YVHVVDICLAHIGCLEL--PIARGRYICTAG 253
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|233427 TIGR01472, gmd, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-11
Identities = 83/345 (24%), Positives = 139/345 (40%), Gaps = 52/345 (15%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNIGAVKVLQELFPEP-----GRLQFI 127
L+TG G GS+ A LL+ Y V ++ S N ++ ++ +P R++
Sbjct: 4 LITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQR---IEHIYEDPHNVNKARMKLH 60
Query: 128 YADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESM--AR 185
Y DL D+ + + E + + AA ++V S P TL +LE++
Sbjct: 61 YGDLTDSSNLRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLG 120
Query: 186 HGVDTLIY-SSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMI 244
Y +ST YG+ +++P E TP P +PY AK A I +++ + + +
Sbjct: 121 LIKSVKFYQASTSELYGKVQEIPQNETTPFYPRSPYAAAKLYAHWITVNYREAYGLFAVN 180
Query: 245 LRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304
FN E+PR R ++ AA I GL+ K + R
Sbjct: 181 GILFN----------HESPR---RGENFVTRKITRAAAKIKLGLQEK---LYLGNLDAKR 224
Query: 305 DYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVE------------------ 346
D+ D V+A L++ +P Y + TG+ SV+EFVE
Sbjct: 225 DWGHAKDYVEAMWLMLQQDKP---DDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGIN 281
Query: 347 -ACKKATSANIKVIYEPR--RPGDYAEVYSDPTKIRLELNWTAKY 388
+ + + V +PR RP + + D TK + +L W +
Sbjct: 282 EVGRCKETGKVHVEIDPRYFRPTEVDLLLGDATKAKEKLGWKPEV 326
|
Alternate name: GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of E. coli. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 343 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 5e-11
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 37/194 (19%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG--RLQFIYAD 130
VLVTGG G IGS ++LK + + I+ SR ++ QEL E +L+F D
Sbjct: 1 VLVTGGGGSIGSELCRQILKFNPKKIIL--FSRDEFKLYEIRQELRQEYNDPKLRFFIGD 58
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH-------NITSNTLVVLESM 183
+ D + + + ++ D V H AA+ +V PL Y+ N+ T V E+
Sbjct: 59 VRDRERLERAMEQHGVDTVFHAAALKHV------PLVEYNPMEAIKTNVLG-TENVAEAA 111
Query: 184 ARHGVDTLIYSST-CATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNS---D 239
+GV+ + ST A P N G K++AE + ++ S
Sbjct: 112 IENGVEKFVLISTDKAVN---------------PTNVMGATKRLAEKLFQAANRESGSGK 156
Query: 240 MAVMILRYFNVIGS 253
++R+ NV+GS
Sbjct: 157 TRFSVVRFGNVLGS 170
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 8e-11
Identities = 64/272 (23%), Positives = 104/272 (38%), Gaps = 59/272 (21%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
V VTG +G+IGS RLL+ Y V V + G+ V L EL RL+ ADL
Sbjct: 1 VCVTGASGFIGSWLVKRLLQRGYTVRATVRDP--GDEKKVAHLLELEGAKERLKLFKADL 58
Query: 132 GDAKAVNKFFSENAFD---AVMHFAA-----VAYVGESTLDPLKYYHNITSNTLVVLESM 183
D + + A D V H A+ E ++P TL VLE+
Sbjct: 59 LDYGSF-----DAAIDGCDGVFHVASPVDFDSEDPEEEMIEP------AVKGTLNVLEAC 107
Query: 184 AR-HGVDTLIYSSTCATY----GEPEKMPITEE--TPQAPINPYGK----AKKMAEDIIL 232
A+ V ++++S+ A E + E + +K +AE
Sbjct: 108 AKAKSVKRVVFTSSVAAVVWNPNRGEGKVVDESCWSDLDFCKKTKLWYALSKTLAEKAAW 167
Query: 233 DFSK--NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290
+F++ D+ + V+G P L+ S ++ I++ L
Sbjct: 168 EFAEENGLDLVTVNPSL--VVG------------PFLQPSLNSS------SQLILSLL-- 205
Query: 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALER 322
KG +G+ + V+D+ DAH+ E+
Sbjct: 206 KGNAEMYQNGSLA--LVHVDDVADAHILLYEK 235
|
This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-10
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 28/166 (16%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+ G G+IG A LL+ + VT++ ++ L + EP + DL
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLLVRNTKR-------LSKEDQEPVAVVEG--DLR 51
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN---TLVVLESMARHGVD 189
D +++ D V+H A + T VLE+ GV
Sbjct: 52 DLDSLSDAVQGV--DVVIHLAGAPRDTR---------DFCEVDVEGTRNVLEAAKEAGVK 100
Query: 190 TLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFS 235
I+ S+ YG+ EET +P +PY K E ++ + S
Sbjct: 101 HFIFISSLGAYGDL-----HEETEPSPSSPYLAVKAKTEAVLREAS 141
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 66/314 (21%), Positives = 108/314 (34%), Gaps = 67/314 (21%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
+L+TG G +G+ R L + V R + D+
Sbjct: 2 KILITGANGQLGTELR-RALPGEFEVIA---TDRAEL---------------------DI 36
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH-NITSNTLVVLESMARHGVDT 190
D AV + E D V++ AA V ++ +P + N T + + A G
Sbjct: 37 TDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATG-AENLARAAAEVGA-R 94
Query: 191 LIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNV 250
L++ ST + + P E P+N YG++K E+ + +ILR V
Sbjct: 95 LVHISTDYVFDGEKGGPYKETDTPNPLNVYGRSKLAGEEAVRAAGPRH----LILRTSWV 150
Query: 251 IGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310
G + R +E + D G
Sbjct: 151 YGEYGNNFVKTMLR-LAKEGKELK--VVDDQYGSP---------------------TYTE 186
Query: 311 DLVDAHVKALERAQPKKVGIYNVGTGKGR-SVKEFVEACKKATSANIKVIYEPRRPGDYA 369
DL DA ++ LE+ K+ G+Y++ G S EF +A + + +VI EP +Y
Sbjct: 187 DLADAILELLEK--EKEGGVYHL-VNSGECSWYEFAKAIFEEAGVDGEVI-EPIASAEY- 241
Query: 370 EVYSDPTKIRLELN 383
PT + N
Sbjct: 242 -----PTPAKRPAN 250
|
Length = 281 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 7e-10
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 26/189 (13%)
Query: 73 VLVTGGAGYIGSHAALRLL-KDSYRVTIVD-NLSRGNIGAVKVLQELFPEPGRLQFIYAD 130
VLVTGG+G+ G +LL + V D + A + ++F+ D
Sbjct: 2 VLVTGGSGFFGERLVKQLLERGGTYVRSFDIAPPGEALSAWQHPN--------IEFLKGD 53
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ D V + + + D V H AA V + L + N+ T VL++ R GV
Sbjct: 54 ITDRNDVEQ--ALSGADCVFHTAA--IVPLAGPRDLYWEVNVGG-TQNVLDACQRCGVQK 108
Query: 191 LIYSSTCATYG-------EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVM 243
+Y+S+ + E +P + Y + K +AE I+L+ + D+
Sbjct: 109 FVYTSSSSVIFGGQNIHNGDETLPYPPL----DSDMYAETKAIAEIIVLEANGRDDLLTC 164
Query: 244 ILRYFNVIG 252
LR + G
Sbjct: 165 ALRPAGIFG 173
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 7e-10
Identities = 67/285 (23%), Positives = 110/285 (38%), Gaps = 47/285 (16%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYA-- 129
++VTGGAG+IGS+ L + +VDNL G V ++ + F+
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLDIADYMDKEDFLAQIM 61
Query: 130 ---DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKY-YHNITSNTLVVLESMAR 185
D GD +A+ F E A + + KY N + +L
Sbjct: 62 AGDDFGDIEAI---FHEGACSSTTEWDG------------KYMMDNNYQYSKELLHYCLE 106
Query: 186 HGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMIL 245
+ L Y+S+ ATYG I E + P+N YG +K + ++ + ++ +
Sbjct: 107 REIPFL-YASSAATYGGRTDDFIEEREYEKPLNVYGYSKFLFDEYVRQILPEANSQICGF 165
Query: 246 RYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK---GTDYSTADGTC 302
RYFNV G P G ++ F + G K G++
Sbjct: 166 RYFNVYG------------PREGHKGSMASVAFHLNNQLNNGENPKLFEGSE------NF 207
Query: 303 VRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEA 347
RD++ V D+ ++ E GI+N GTG+ S + +A
Sbjct: 208 KRDFVYVGDVAAVNLWFWENGVS---GIFNCGTGRAESFQAVADA 249
|
Length = 308 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 1e-09
Identities = 75/337 (22%), Positives = 111/337 (32%), Gaps = 73/337 (21%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+TG G +G L + Y V R K+ DL
Sbjct: 2 ILITGATGMLGRALVRLLKERGYEVI---GTGRSRASLFKL----------------DLT 42
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN---TLVVLESMARHGVD 189
D AV + + D +++ AA V + DP N + + G
Sbjct: 43 DPDAVEEAIRDYKPDVIINCAAYTRVDKCESDPEL---AYRVNVLAPENLARAAKEVGA- 98
Query: 190 TLIYSST-CATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYF 248
LI+ ST G+ K P EE P+N YGK+K + E +L+ + +ILR
Sbjct: 99 RLIHISTDYVFDGK--KGPYKEEDAPNPLNVYGKSKLLGEVAVLNANPRY----LILR-T 151
Query: 249 NVIGSDPEGRLGE-APRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307
+ + E + GE LR +V T
Sbjct: 152 SWLYG--ELKNGENFVEWMLRLAA--------------ERKEVNVVHDQIGSPTYAA--- 192
Query: 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKA---TSANIKVIYE--- 361
DL DA ++ +ER GIY++ S EF + A IK I
Sbjct: 193 ---DLADAILELIERNSLT--GIYHLSNSGPISKYEFAKLIADALGLPDVEIKPITSSEY 247
Query: 362 ---PRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESL 395
RRP S +LE K + +E+L
Sbjct: 248 PLPARRPA-----NSSLDCSKLEELGGIKPPDWKEAL 279
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 69/278 (24%), Positives = 108/278 (38%), Gaps = 66/278 (23%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVL-----QELFPEPGRLQ--- 125
LVTGG G++G H LL+ G + V+V EL + +LQ
Sbjct: 1 LVTGGGGFLGRHIVRLLLR------------EGELQEVRVFDLRFSPELLEDFSKLQVIT 48
Query: 126 FIYADLGDAKAVNKFFSENAFDAVMHFAAVAYV-GESTLDPLKYYHNITSNTLVVLESMA 184
+I D+ D + + + + D V+H AA+ V G++ D T VL++
Sbjct: 49 YIEGDVTDKQDLRR--ALQGSDVVIHTAAIIDVFGKAYRD--TIMKVNVKGTQNVLDACV 104
Query: 185 RHGVDTLIYSSTCA-----TYGEP-----EKMPITEETPQAPINPYGKAKKMAEDIIL-- 232
+ GV L+Y+S+ +YG+P E P E T Q PY ++K +AE ++L
Sbjct: 105 KAGVRVLVYTSSMEVVGPNSYGQPIVNGDETTPY-ESTHQD---PYPESKALAEKLVLKA 160
Query: 233 ---DFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289
+ LR P G GE P L ++ LK
Sbjct: 161 NGSTLKNGGRLYTCALR--------PAGIFGEG-DPFL-------------FPFLVRLLK 198
Query: 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKK 327
+ T D + D + V ++ AH+ A Q K
Sbjct: 199 NGLAKFRTGDKNVLSDRVYVGNVAWAHILAARALQDPK 236
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis thaliana SQD1 and related proteins), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 49/156 (31%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG---RLQ---- 125
VL+ GG GY G AL L K + V IVDNL R I L+ L P RL+
Sbjct: 3 VLILGGDGYCGWPTALHLSKRGHEVCIVDNLVRRRIDVELGLESLTPIASIHERLRAWKE 62
Query: 126 -------FIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLD-PLKYY--HNITSN 175
F D D + + + + + DAV+HFA S +D Y HN
Sbjct: 63 LTGKTIEFYVGDACDYEFLAELLASHEPDAVVHFAEQRSAPYSMIDREHANYTQHNNVIG 122
Query: 176 TLVVLESMARHGVDT-LIYSSTCATYGEPEKMPITE 210
TL +L ++ D L+ T YG P + I E
Sbjct: 123 TLNLLFAIKEFDPDCHLVKLGTMGEYGTPN-IDIPE 157
|
Arabidopsis thaliana UDP-sulfoquinovose-synthase ( SQD1), an extended SDR, catalyzes the transfer of SO(3)(-) to UDP-glucose in the biosynthesis of plant sulfolipids. Members of this subgroup share the conserved SDR catalytic residues, and a partial match to the characteristic extended-SDR NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 382 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 6e-09
Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 24/168 (14%)
Query: 73 VLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
LV GG+G++G H +LL+ V + D + GR+QF DL
Sbjct: 2 CLVVGGSGFLGRHLVEQLLRRGNPTVHVFD--------IRPTFELDPSSSGRVQFHTGDL 53
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
D + + K F+E + V H A+ + YY T V+E+ + GV L
Sbjct: 54 TDPQDLEKAFNEKGPNVVFHTASPD----HGSNDDLYYKVNVQGTRNVIEACRKCGVKKL 109
Query: 192 IYSSTCATY--GEP-----EKMPITEETPQAPINPYGKAKKMAEDIIL 232
+Y+S+ + G+ E +P P + Y + K +AE ++L
Sbjct: 110 VYTSSASVVFNGQDIINGDESLPY----PDKHQDAYNETKALAEKLVL 153
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 9e-09
Identities = 51/245 (20%), Positives = 83/245 (33%), Gaps = 42/245 (17%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+TG G +G +L + RV + S+ DL
Sbjct: 2 ILITGANGQLGRELVQQLSPE-GRVVVALTRSQ-----------------------LDLT 37
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D +A+ + DAV++ AA V + DP K + + + ARHG L+
Sbjct: 38 DPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGAR-LV 96
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIG 252
+ ST + K P E+ P+N YG++K E + N+ +I+R + G
Sbjct: 97 HISTDYVFDGEGKRPYREDDATNPLNVYGQSKLAGEQAVRAAGPNA----LIVRTSWLYG 152
Query: 253 SDPEGRLGEAPRPELREHGRIS---------GACFDAARGIIAGLK----VKGTDYSTAD 299
+ D AR I A L+ +G +
Sbjct: 153 GGGGRNFVRTMLRLAGRGEELRVVDDQIGSPTYAKDLARVIAALLQRLARARGVYHLANS 212
Query: 300 GTCVR 304
G C
Sbjct: 213 GQCSW 217
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 52/197 (26%), Positives = 75/197 (38%), Gaps = 22/197 (11%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V VTGG G++G H RLL++ ++V + L R + + + + G
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENGFKVLV---LVRSE-SLGEAHERIEEAGLEADRVRVLEG 56
Query: 133 DAKAVNKFFSENAF-------DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMAR 185
D N S A D V+H AA D + NI T VLE AR
Sbjct: 57 DLTQPNLGLSAAASRELAGKVDHVIHCAASYDFQAPNEDA--WRTNIDG-TEHVLELAAR 113
Query: 186 HGVDTLIYSSTCATYGEPEKMPITEET----PQAPINPYGKAKKMAEDIILDFSKNSDMA 241
+ Y ST G E ET Q NPY ++K AE ++ + +
Sbjct: 114 LDIQRFHYVSTAYVAGNRE--GNIRETELNPGQNFKNPYEQSKAEAEQLVRAAAT--QIP 169
Query: 242 VMILRYFNVIGSDPEGR 258
+ + R V+G GR
Sbjct: 170 LTVYRPSIVVGDSKTGR 186
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 9e-08
Identities = 79/358 (22%), Positives = 130/358 (36%), Gaps = 52/358 (14%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVT--IVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD 130
VLVTG G+ GS +L L + +V +D + N+ + L + D
Sbjct: 7 VLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTNPNLFELANLDNK------ISSTRGD 60
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VD 189
+ D A+ + E + V H AA V S DP++ + T+ +LE++ G V
Sbjct: 61 IRDLNALREAIREYEPEIVFHLAAQPLVRLSYKDPVETFETNVMGTVNLLEAIRETGSVK 120
Query: 190 TLIYSSTCATYGEPEKM-PITEETPQAPINPYGKAKKMAEDIILDFSK---------NSD 239
++ ++ Y E E P +PY +K AE II +
Sbjct: 121 AVVNVTSDKCYENKEWGWGYRENDPLGGHDPYSSSKGCAELIISSYRNSFFNPENYGKHG 180
Query: 240 MAVMILRYFNVIGSD--PEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK-GTDYS 296
+A+ R NVIG E R+ P D R AG +V +
Sbjct: 181 IAIASARAGNVIGGGDWAEDRI--VP---------------DCIRAFEAGERVIIRNPNA 223
Query: 297 TADGTCVRDYIDVNDLVDAHV---KALERAQPKKVGIYNVG--TGKGRSVKEFVEA-CKK 350
R + V + + ++ + L + +N G +V E VEA +
Sbjct: 224 I------RPWQHVLEPLSGYLLLAEKLYERGEEYAEAWNFGPDDEDAVTVLELVEAMARY 277
Query: 351 ATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGG 408
+ P + + D +K + L W ++ NL+E+LE W K G
Sbjct: 278 WGEDARWDLDGNSHPHEANLLKLDCSKAKTMLGWRPRW-NLEETLEFTVAWYKEWLSG 334
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 59/247 (23%), Positives = 87/247 (35%), Gaps = 48/247 (19%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+LVTG G +G RLL + + R + DL
Sbjct: 1 ILVTGANGQLGR-ELTRLLAERGVEVVA--------------------LDRPEL---DLT 36
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH-NITSNTLVVLESMARHGVDTL 191
D +AV E D V++ AA V ++ +P Y N + E+ A G L
Sbjct: 37 DPEAVAALVREARPDVVVNAAAYTAVDKAESEPELAYAVNALG-PGNLAEACAARGA-PL 94
Query: 192 IYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVI 251
I+ ST + + P E+ P P+N YG+ K E +L + +ILR V
Sbjct: 95 IHISTDYVFDGAKGGPYREDDPTGPLNVYGRTKLAGEQAVLAANPRH----LILRTAWVY 150
Query: 252 GSDPEG------RLGEAPRPELR----EHGR------ISGACFDAARGIIAGLKVKGTDY 295
G RL R ELR + G ++ A R + G + GT +
Sbjct: 151 GEYGNNFVKTMLRLAAE-RDELRVVDDQLGSPTSARDLADALLALIRKRLRGPALAGTYH 209
Query: 296 STADGTC 302
G
Sbjct: 210 LAGSGET 216
|
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 4e-07
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 23/172 (13%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYR---VTIVDN-LSRGNIGAVKVLQELFPEPGRLQFIYA 129
LVTGG G++G H LL+ + ++D I E + I
Sbjct: 3 LVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAFGPELIE----HFEKSQGKTYVTDIEG 58
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKY--YHNITSN-TLVVLESMARH 186
D+ D + F + V+H AA+ P Y + N T VLE+ ++
Sbjct: 59 DIKDLSFL--FRACQGVSVVIHTAAIV----DVFGPPNYEELEEVNVNGTQAVLEACVQN 112
Query: 187 GVDTLIYSSTCATYGEPEKMPIT----EETPQAPIN--PYGKAKKMAEDIIL 232
V L+Y+S+ G K E+TP + PY +K +AE+I+L
Sbjct: 113 NVKRLVYTSSIEVAGPNFKGRPIFNGVEDTPYEDTSTPPYASSKLLAENIVL 164
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|178326 PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 6e-07
Identities = 67/289 (23%), Positives = 114/289 (39%), Gaps = 43/289 (14%)
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAA-VAYVGESTLDPLKYYHN---ITSNTLVVLESMAR 185
DL V FF++ V+ AA V + + P + I +N V+++ R
Sbjct: 34 DLTRQADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTN---VIDAAYR 90
Query: 186 HGVDTLIYSSTCATYGEPEKMPITEET----PQAPINP-YGKAKKMAEDIILDFSKNSDM 240
HGV L++ + Y + PI E P P N Y AK +
Sbjct: 91 HGVKKLLFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAGIKM--------CQ 142
Query: 241 AVMILRYFNVIGSDPEGRLGEAPRPELR-EHGRISGA----CFDAARGIIAGLKVKGTDY 295
A I ++ I P G P E+ + A +A K G
Sbjct: 143 AYRIQYGWDAISGMPTNLYG--PHDNFHPENSHVIPALIRRFHEA--------KANGAPE 192
Query: 296 STA--DGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSVKEFVEACKKAT 352
G+ +R+++ V+DL DA V + R + V NVG+G ++KE E K+
Sbjct: 193 VVVWGSGSPLREFLHVDDLADAVVFLMRRYSGAEHV---NVGSGDEVTIKELAELVKEVV 249
Query: 353 SANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
+++++ +P D +K+R L W K++ L++ L+ ++W
Sbjct: 250 GFEGELVWDTSKPDGTPRKLMDSSKLR-SLGWDPKFS-LKDGLQETYKW 296
|
Length = 306 |
| >gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 9e-07
Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 18/146 (12%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTG + IG A RL ++ +V + D + + + ++ G + AD+
Sbjct: 1 ALVTGASSGIGRAIARRLAREGAKVVLAD-RNEEALAELAAIEA---LGGNAVAVQADVS 56
Query: 133 DAKAVNKFFSE--NAF---DAVMHFAAVAYVGESTLDPLKYY-----HNITSNTLV---V 179
D + V E F D +++ A +A G + + N+T L+
Sbjct: 57 DEEDVEALVEEALEEFGRLDILVNNAGIARPGPLEELTDEDWDRVLDVNLTGVFLLTRAA 116
Query: 180 LESMARHGVDTLIY-SSTCATYGEPE 204
L M + G ++ SS P
Sbjct: 117 LPHMKKQGGGRIVNISSVAGLRPLPG 142
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234 |
| >gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 1e-06
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
LVTG + IG ALRL D +V I D A + EL G + + D+
Sbjct: 7 TALVTGASRGIGRAIALRLAADGAKVVIYD---SNEEAAEALAAELRAAGGEARVLVFDV 63
Query: 132 GDAKAVNKFFSENAFDAVM-HFAAVAYV 158
D AV +A + F A+ +
Sbjct: 64 SDEAAV-----RALIEAAVEAFGALDIL 86
|
Length = 246 |
| >gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG-RLQFIYAD 130
LVTG A +G ALRL + V + R + A + L E G R Q + AD
Sbjct: 8 VALVTGAARGLGRAIALRLARAGADVVVH---YRSDEEAAEELVEAVEALGRRAQAVQAD 64
Query: 131 LGDAKAV 137
+ D A+
Sbjct: 65 VTDKAAL 71
|
Length = 249 |
| >gnl|CDD|187672 cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid dehydrogenase (3b-HSD)-like, subgroup1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 6e-06
Identities = 66/266 (24%), Positives = 99/266 (37%), Gaps = 46/266 (17%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VL+TGG GY G L K V + D + QEL ++FI AD+
Sbjct: 2 VLITGGGGYFGFRLGCALAKSGVHVILFD--------IRRPQQELPEG---IKFIQADVR 50
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D + K + D V H A+ G L+ T +++ R V LI
Sbjct: 51 DLSQLEKAVA--GVDCVFHIASYGMSGREQLNRELIEEINVRGTENIIQVCVRRRVPRLI 108
Query: 193 YSSTC-ATYGEPEKMPITEETPQAP----INPYGKAKKMAEDIILDFS----KNSD--MA 241
Y+ST +G E P P ++ Y + K +AE ++L + N+ +
Sbjct: 109 YTSTFNVIFGGQPIRNGDESLPYLPLDLHVDHYSRTKSIAEQLVLKANNMPLPNNGGVLR 168
Query: 242 VMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGT 301
LR P G G E R RI I GL + + D
Sbjct: 169 TCALR--------PAGIYGPG---EQRHLPRIVSY-------IEKGLFM----FVYGDPK 206
Query: 302 CVRDYIDVNDLVDAHVKALERAQPKK 327
+ +++ V++LV AH+ A E K
Sbjct: 207 SLVEFVHVDNLVQAHILAAEALTTAK 232
|
An uncharacterized subgroup of the 3b-HSD-like extended-SDR family. Proteins in this subgroup have the characteristic active site tetrad and NAD(P)-binding motif of extended-SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 339 |
| >gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 26/186 (13%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+TGG G G RLL++ Y + SR + + +Q+ FP P L+F D+
Sbjct: 7 ILITGGTGSFGKAFISRLLEN-YNPKKIIIYSRDELKQWE-MQQKFPAP-CLRFFIGDVR 63
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH-NITSNTLVVLESMARHGVDTL 191
D + + + D V+H AA+ V + +P + NI V+ ++ GV +
Sbjct: 64 DKERLTRAL--RGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDN-GVKRV 120
Query: 192 IYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIIL----DFSKNSDMAVMILRY 247
+ ST + PIN YG A K+A D + + S + ++RY
Sbjct: 121 VALST--------------DKAANPINLYG-ATKLASDKLFVAANNISGSKGTRFSVVRY 165
Query: 248 FNVIGS 253
NV+GS
Sbjct: 166 GNVVGS 171
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Length = 324 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 32/194 (16%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL- 131
+ +TG G+I SH A RL + + + D ++ +++F +F DL
Sbjct: 24 ICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMS-----EDMFCH----EFHLVDLR 74
Query: 132 --GDAKAVNKFFSENAFDAVMHFAA-VAYVG--ESTLDPLKYYHNITSNTLVVLESMARH 186
+ V K D V + AA + +G +S + Y N T + +LE+ +
Sbjct: 75 VMENCLKVTK-----GVDHVFNLAADMGGMGFIQSNHSVIMY--NNTMISFNMLEAARIN 127
Query: 187 GVDTLIYSSTCATYGEPEKMPITEET--------PQAPINPYGKAKKMAEDIILDFSKNS 238
GV Y+S+ Y PE + P P + YG K E++ ++K+
Sbjct: 128 GVKRFFYASSACIY--PEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDF 185
Query: 239 DMAVMILRYFNVIG 252
+ I R+ N+ G
Sbjct: 186 GIECRIGRFHNIYG 199
|
Length = 370 |
| >gnl|CDD|215310 PLN02572, PLN02572, UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 43/151 (28%), Positives = 58/151 (38%), Gaps = 18/151 (11%)
Query: 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG-------- 122
V+V GG GY G AL L K Y V IVDNL R L L P
Sbjct: 48 KKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRW 107
Query: 123 ------RLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN- 175
++ D+ D + +++ F DAV+HF S +D + +N
Sbjct: 108 KEVSGKEIELYVGDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNV 167
Query: 176 --TLVVLESMARHGVDT-LIYSSTCATYGEP 203
TL VL ++ D L+ T YG P
Sbjct: 168 IGTLNVLFAIKEFAPDCHLVKLGTMGEYGTP 198
|
Length = 442 |
| >gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 40/174 (22%), Positives = 62/174 (35%), Gaps = 22/174 (12%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V G +G IG A L + + V +V ++ + AD
Sbjct: 2 AHVLGASGPIGREVARELRRRGWDVRLVSRSGSKL-----------AWLPGVEIVAADAM 50
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
DA +V + A D + H A AY L P + N + + A L+
Sbjct: 51 DASSVIAA-ARGA-DVIYHCANPAYTRWEELFP-----PLMENVV----AAAEANGAKLV 99
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILR 246
YG PITE+TP P G+ + E+ +L D+ +I+R
Sbjct: 100 LPGNVYMYGPQAGSPITEDTPFQPTTRKGRIRAEMEERLLAAHAKGDIRALIVR 153
|
These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302 |
| >gnl|CDD|187615 cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTG A IG A L + YRV + N S A ++ EL + ADL
Sbjct: 3 ALVTGAAKRIGRAIAEALAAEGYRVVVHYNRSEA--EAQRLKDELNALRNSAVLVQADLS 60
Query: 133 DAKA----VNKFFSE-NAFDAVMHFAAVAYVGESTLDPL 166
D A V F D +++ A+ +
Sbjct: 61 DFAACADLVAAAFRAFGRCDVLVNNASA-FYPTPLGQGS 98
|
Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 234 |
| >gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 45/164 (27%), Positives = 67/164 (40%), Gaps = 26/164 (15%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQ-----FI 127
+L+TGG G IGS A LL+ Y G V+ +P F
Sbjct: 2 ILITGGLGQIGSELAK-LLRKRY-------------GKDNVIASDIRKPPAHVVLSGPFE 47
Query: 128 YADLGDAKAVNKFFSENAFDAVMHFAAV-AYVGESTLDPLKYYHNITSNTLVVLESMARH 186
Y D+ D K++ + + ++H AA+ + VGE PL + N+ VLE H
Sbjct: 48 YLDVLDFKSLEEIVVNHKITWIIHLAALLSAVGEKNP-PLAWDVNMNG-LHNVLELAREH 105
Query: 187 GVDTLIYSSTCATYGEPE--KMPITEETPQAPINPYGKAKKMAE 228
+ ST +G P + ++T Q P YG +K AE
Sbjct: 106 N-LRIFVPSTIGAFG-PTTPRNNTPDDTIQRPRTIYGVSKVAAE 147
|
This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308 |
| >gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 6e-05
Identities = 76/335 (22%), Positives = 113/335 (33%), Gaps = 56/335 (16%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
V VTG G+IGS L+ + V L+R + GA K+ E Q DL
Sbjct: 2 KVFVTGATGFIGSAVVRELVAAGHEVV---GLARSDAGAAKL------EAAGAQVHRGDL 52
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNI---TSNTLVVLESMARHGV 188
D + K +E DAV+H A T D + + E++ G
Sbjct: 53 EDLDILRKAAAEA--DAVIHLAF-------THDFDNFAQACEVDRRAIEALGEALRGTGK 103
Query: 189 DTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYF 248
LIY+S G EE P P P A+ ++E L+ ++ A ++
Sbjct: 104 -PLIYTSGIWLLGPTGGQEEDEEAPDDP--PTPAARAVSEAAALELAERGVRASVVRLPP 160
Query: 249 NVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308
V HGR F IA + KG DG +
Sbjct: 161 VV-------------------HGRGDHG-FVPMLIAIA--REKGVSAYVGDGKNRWPAVH 198
Query: 309 VNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVI---YEPRRP 365
+D + ALE+ + +Y+ +G VK+ EA + + I
Sbjct: 199 RDDAARLYRLALEKGKAG--SVYHAVAEEGIPVKDIAEAIGRRLGVPVVSIPAEEAAAHF 256
Query: 366 GDYAEVYS-----DPTKIRLELNWTAKYTNLQESL 395
G A + K R L W + +L E L
Sbjct: 257 GWLAMFVALDQPVSSQKTRRRLGWKPQQPSLLEDL 291
|
This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291 |
| >gnl|CDD|233570 TIGR01777, yfcH, TIGR01777 family protein | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 40/150 (26%), Positives = 52/150 (34%), Gaps = 31/150 (20%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+TGG G+IG RL K + VTI L+R P PG +
Sbjct: 1 ILITGGTGFIGRALTQRLTKRGHEVTI---LTRS------------PPPGANTKW--EGY 43
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPL---KYYHNI------TSNTLVVLESM 183
A S DAV++ A GE D + I T+ LV +
Sbjct: 44 KPWAGEDADSLEGADAVINLA-----GEPIADKRWTEERKQEIRDSRIDTTRLLVEAIAA 98
Query: 184 ARHGVDTLIYSSTCATYGEPEKMPITEETP 213
A I +S YG E TEE
Sbjct: 99 AEQKPKVFISASAVGYYGPSEDREYTEEDS 128
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein [Hypothetical proteins, Conserved]. Length = 291 |
| >gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
LVTG A IG A+RL D V +VD A + + G+ + D+
Sbjct: 8 VALVTGAARGIGRAIAVRLAADGAEVIVVD---ICGDDAAATAELVEAAGGKARARQVDV 64
Query: 132 GDAKAVNKFFS--ENAF---DAVMHFAAVA 156
D A+ + F D ++ A +
Sbjct: 65 RDRAALKAAVAAGVEDFGRLDILVANAGIF 94
|
Length = 251 |
| >gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 46/214 (21%), Positives = 71/214 (33%), Gaps = 39/214 (18%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+ V G G G LL ++VT LSR A + + DL
Sbjct: 1 IAVIGATGKTGRRLVKELLARGHQVTA---LSRNPSKAPAP---------GVTPVQKDLF 48
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D + + + DAV V G D H +L++ AR GV ++
Sbjct: 49 DLADLAEALAG--VDAV-----VDAFGARPDDSDGVKH--------LLDAAARAGVRRIV 93
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIG 252
S Y + ++ P P PY +AK AE+++ + S + I+R +
Sbjct: 94 VVSAAGLYRDEPGTFRLDDAPLFP--PYARAKAAAEELL----RASGLDWTIVRPGALFD 147
Query: 253 SDPEGRLGEAPRPELREHGRIS-----GACFDAA 281
+ E E IS A D
Sbjct: 148 EEGETYEIGTEGDPAGE-SSISRADVAAALLDEL 180
|
Length = 182 |
| >gnl|CDD|178047 PLN02427, PLN02427, UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 85/369 (23%), Positives = 141/369 (38%), Gaps = 64/369 (17%)
Query: 77 GGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEP--GRLQFIYADLGDA 134
G G+IGSH +L+ ++ + ++ I K L E P GR+QF ++
Sbjct: 21 GAGGFIGSHLCEKLMTETPHKVLALDVYNDKI---KHLLEPDTVPWSGRIQFHRINIKHD 77
Query: 135 KAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYS 194
+ D ++ AA+ + PL ++ + L V++ + + LI+
Sbjct: 78 SRLEGLIKMA--DLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIHF 134
Query: 195 STCATYGE------PEKMPIT----------EETP--QAPIN----PYGKAKKMAEDIIL 232
STC YG+ P+ P+ +E+P I Y AK++ E +I
Sbjct: 135 STCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIY 194
Query: 233 DFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHG--RISGACFDAARGIIAGLKV 290
+ + I+R FN IG R+ P + G R+ ACF ++ +
Sbjct: 195 AEGAENGLEFTIVRPFNWIGP----RMDFIPGIDGPSEGVPRVL-ACFSNN--LLRREPL 247
Query: 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGR-SVKEFVEACK 349
K D G R ++ + D ++A + +E I+NVG +V++ E
Sbjct: 248 KLVD----GGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEM-- 301
Query: 350 KATSANIKVIYEPRRPGD---------YAEVYSDPTK-------IRLELNWTAKYTNLQE 393
T KV EP Y E Y D K I +L W K T+L +
Sbjct: 302 -MTEVYAKVSGEPALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPK-TSLWD 359
Query: 394 SLEIAWRWQ 402
LE +Q
Sbjct: 360 LLESTLTYQ 368
|
Length = 386 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 42/178 (23%), Positives = 68/178 (38%), Gaps = 36/178 (20%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
VLV G G +G H LL Y+V +V + S+ E + + DL
Sbjct: 2 VLVVGATGKVGRHVVRELLDRGYQVRALVRDPSQAE----------KLEAAGAEVVVGDL 51
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLK--YYHNITSNTLVVLESMARHGVD 189
DA+++ + DAV+ AA + G+ Y NI ++++ + GV
Sbjct: 52 TDAESLAA--ALEGIDAVI-SAAGSG-GKGGPRTEAVDYDGNIN-----LIDAAKKAGVK 102
Query: 190 TLIY-SSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILR 246
+ SS A + PY AK+ AED + + S + I+R
Sbjct: 103 RFVLVSSIGADKPSHPLEALG---------PYLDAKRKAEDYL----RASGLDYTIVR 147
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTG + IG AL+L K+ +V I GA +V++EL + + D+
Sbjct: 1 ALVTGASRGIGRAIALKLAKEGAKVII--TYRSSEEGAEEVVEELKAYGVKALGVVCDVS 58
Query: 133 DAKAVNKFFSE 143
D + V E
Sbjct: 59 DREDVKAVVEE 69
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239 |
| >gnl|CDD|187553 cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 32/152 (21%), Positives = 46/152 (30%), Gaps = 31/152 (20%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
+++TGG G+IG RL + V + LSR P
Sbjct: 1 KIVITGGTGFIGRALTRRLTAAGHEVVV---LSR------------RPGKAEGLAEVITW 45
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPL---KYYHNI------TSNTLVVLES 182
A DAV++ A GE I ++ LV +
Sbjct: 46 DGLSLGPWEL-PGA-DAVINLA-----GEPIACRRWTEANKKEILSSRIESTRVLVEAIA 98
Query: 183 MARHGVDTLIYSSTCATYGEPEKMPITEETPQ 214
A LI +S YG +TE +P
Sbjct: 99 NAPAPPKVLISASAVGYYGHSGDEVLTENSPS 130
|
This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 296 |
| >gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 6e-04
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQ--FIYA 129
LVTG + IG A L ++ RV + R A + L E G + + A
Sbjct: 7 VALVTGASSGIGRAIARALAREGARVVVAA--RRSEEEAAEALAAAIKEAGGGRAAAVAA 64
Query: 130 DLGD-AKAVNKFFSE 143
D+ D ++V +
Sbjct: 65 DVSDDEESVEALVAA 79
|
Length = 251 |
| >gnl|CDD|187624 cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 7e-04
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
++TG A IG A RL D + + + D A +QE+ + AD+
Sbjct: 5 AIITGAAQGIGRAIAERLAADGFNIVLADLNL--EEAAKSTIQEISEAGYNAVAVGADVT 62
Query: 133 DAKAVNKFFSENA-----FDAVMHFAAVA 156
D V + FD +++ A +A
Sbjct: 63 DKDDVEALIDQAVEKFGSFDVMVNNAGIA 91
|
2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 54/218 (24%), Positives = 78/218 (35%), Gaps = 43/218 (19%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN--IGAVKVLQELFPEPGRLQFIYA 129
+VL+TG G++G++ L LL S I L R A+ L++ F + A
Sbjct: 2 NVLLTGATGFLGAYLLLELLDRSDAKVIC--LVRAQSDEAALARLEKTFDLYRHWDELSA 59
Query: 130 D-----LGDAKAVNKF-FSE-------NAFDAVMHFAA-VAYVGE-STLDPLKYYHNITS 174
D GD A SE D ++H AA V +V S L +
Sbjct: 60 DRVEVVAGD-LAEPDLGLSERTWQELAENVDLIIHNAALVNHVFPYSELRG--------A 110
Query: 175 NTLV---VLESMARHGVDTLIYSSTCATYGEPEKMPITEETP----------QAPINPYG 221
N L VL A L Y S+ + GE E Q YG
Sbjct: 111 NVLGTAEVLRLAATGKPKPLHYVSSISV-GETEYYSNFTVDFDEISPTRNVGQGLAGGYG 169
Query: 222 KAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRL 259
++K +AE ++ + + V I R + G G L
Sbjct: 170 RSKWVAEKLVREAGDRG-LPVTIFRPGYITGDSRTGAL 206
|
Length = 382 |
| >gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 9e-04
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V++TG + +G +AA L K + V + R A QEL P I+ DLG
Sbjct: 9 VIITGASSGVGLYAAKALAKRGWHVIMA---CRNLKKAEAAAQELGIPPDSYTIIHIDLG 65
Query: 133 DAKAVNKFFSE-----NAFDAVMHFAAV 155
D +V +F + DA++ AAV
Sbjct: 66 DLDSVRRFVDDFRALGKPLDALVCNAAV 93
|
Length = 322 |
| >gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 15/146 (10%)
Query: 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVD-NLSRGNIGAVKVLQELFPEPGRLQFIYA 129
HVL+TGG+ IG A L+K+ V IV + S+ ++ E ++ +I A
Sbjct: 2 KHVLITGGSSGIGKALAKELVKEGANVIIVARSESKLEEAVEEIEAEANASGQKVSYISA 61
Query: 130 DLGDAKAVNKFFSENAF-----DAVMHFAAVAYVGE-STLDPLKYYHNITSNTL------ 177
DL D + V + F++ D V++ A ++ G L ++ + N
Sbjct: 62 DLSDYEEVEQAFAQAVEKGGPPDLVVNCAGISIPGLFEDLTAEEFERGMDVNYFGSLNVA 121
Query: 178 -VVLESM-ARHGVDTLIYSSTCATYG 201
VL M + + SS A G
Sbjct: 122 HAVLPLMKEQRPGHIVFVSSQAALVG 147
|
These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239 |
| >gnl|CDD|237219 PRK12827, PRK12827, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS-RGNIGAVKVLQELFPEPGRLQFIYADL 131
VL+TGG+G +G A+RL D V ++D RG A V + G+ + D+
Sbjct: 9 VLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDV 68
Query: 132 GDAKAVNKFFSENAFDA-VMHFAAV 155
D A A DA V F +
Sbjct: 69 RDFAAT-----RAALDAGVEEFGRL 88
|
Length = 249 |
| >gnl|CDD|178263 PLN02657, PLN02657, 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 12/141 (8%)
Query: 54 SPTFSSPSPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVD---NLSRGNIGA 110
+ ++ F E VLV G GYIG L++ Y V V + RG G
Sbjct: 44 ATAAAAAQSFRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGK 103
Query: 111 VKVLQELFPEPGRLQFIYADLGDAKAVNK-FFSEN-AFDAVMHFAAVAYVGESTLDPLKY 168
+EL + ++ D+ DA ++ K FSE D V+ A G D K
Sbjct: 104 EDTKKELPG----AEVVFGDVTDADSLRKVLFSEGDPVDVVVSCLASRTGGVK--DSWKI 157
Query: 169 YHNITSNTLVV-LESMARHGV 188
+ T N+L E A+H V
Sbjct: 158 DYQATKNSLDAGREVGAKHFV 178
|
Length = 390 |
| >gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTG A +G+ A L + V D L+ A ++ L GR I ADL
Sbjct: 10 ALVTGAARGLGAAFAEALAEAGATVAFNDGLAA---EARELAAALEAAGGRAHAIAADLA 66
Query: 133 DAKAVNKFFSENA-----FDAVMHFAAVA 156
D +V +FF A D +++ A +
Sbjct: 67 DPASVQRFFDAAAAALGGLDGLVNNAGIT 95
|
Length = 250 |
| >gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVT + IG A L ++ RV I +R + EL + + ADL
Sbjct: 4 ALVTAASSGIGLAIARALAREGARVAI---CARNRENLERAASELRAGGAGVLAVVADLT 60
Query: 133 DAKAVNKFFSE 143
D + +++ +
Sbjct: 61 DPEDIDRLVEK 71
|
This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|131468 TIGR02415, 23BDH, acetoin reductases | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.002
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD 133
LVTGGA IG A RL KD + V + D A + +E+ G+ D+ D
Sbjct: 4 LVTGGAQGIGKGIAERLAKDGFAVAVAD---LNEETAKETAKEINQAGGKAVAYKLDVSD 60
Query: 134 AKAVNKFFSENA-----FDAVMHFAAVAYVG---ESTLDPLKYYHNI 172
V + A FD +++ A VA + E T + LK +N+
Sbjct: 61 KDQVFSAIDQAAEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNV 107
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PMID:11577733) [Energy metabolism, Fermentation]. Length = 254 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 38/200 (19%)
Query: 75 VTGGAGYIGSHAALRLLKDSYRVTIVDNL----SRGNIGAVKVLQELF----PEP----G 122
+TG G++G +LL+ + V I G ++ QEL +
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEVKIY--CLVRAKDGESALERLRQELLKYGLFDRLKALE 58
Query: 123 RLQFIYADLGDAK-----AVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYY--HNITSN 175
R+ + DL + + +E D ++H AA + ++P N+
Sbjct: 59 RIIPVAGDLSEPNLGLSDEDFQELAEEV-DVIIHNAATV----NFVEPYSDLRATNVLG- 112
Query: 176 TLVVLESMARHGVDTLIYSSTCATYGE-----PEKMPITEETPQAPI----NPYGKAKKM 226
T VL + + ST GE EK +E A + N Y ++K +
Sbjct: 113 TREVLRLAKQMKKLPFHHVSTAYVNGERGGLLEEKPYKLDEDEPALLGGLPNGYTQSKWL 172
Query: 227 AEDIILDFSKNSDMAVMILR 246
AE ++ + + + V+I R
Sbjct: 173 AEQLVREAAGG--LPVVIYR 190
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTG + IG ALRL + +V + D R A + ++E+ G + AD+
Sbjct: 3 ALVTGASRGIGRAIALRLAAEGAKVAVTD---RSEEAAAETVEEIKALGGNAAALEADVS 59
Query: 133 DAKAVNKFFSE 143
D +AV +
Sbjct: 60 DREAVEALVEK 70
|
This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240 |
| >gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.003
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG-RLQFIYAD 130
VL+TGG G +G A L + R ++ + GA +++ EL G + D
Sbjct: 2 TVLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAELVAEL-EALGAEVTVAACD 60
Query: 131 LGDAKAVNKFFSENA-----FDAVMHFAAV 155
+ D A+ + D V+H A V
Sbjct: 61 VADRDALAALLAALPAALGPLDGVVHNAGV 90
|
This family contains a wide variety of dehydrogenases. Length = 167 |
| >gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVT--IVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD 130
VLVTG G+ GS +L LL+ V +D + N L EL +++ + D
Sbjct: 7 VLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPN------LFELLNLAKKIEDHFGD 60
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH 186
+ DA + K +E + V H AA V +S DPL+ + T+ +LE+ R
Sbjct: 61 IRDAAKLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEA-IRA 115
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349 |
| >gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.004
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 10/98 (10%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG--RLQFIYA 129
V++TG IG A L K V I R + E+ E G +++ I
Sbjct: 3 VVVITGANSGIGKETARELAKRGAHVIIA---CRNEEKGEEAAAEIKKETGNAKVEVIQL 59
Query: 130 DLGDAKAVNKFFSE-----NAFDAVMHFAAVAYVGEST 162
DL +V +F E D +++ A +
Sbjct: 60 DLSSLASVRQFAEEFLARFPRLDILINNAGIMAPPRRL 97
|
Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 45/216 (20%), Positives = 87/216 (40%), Gaps = 41/216 (18%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG--NIGAVKVLQELFPEPG------- 122
VL+TG G++G++ LL+ S + ++ L R A++ L+E
Sbjct: 1 TVLLTGATGFLGAYLLEELLRRSTQAKVI-CLVRAASEEHAMERLREALRSYRLWHEDLA 59
Query: 123 --RLQFIYADLG-------DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH--- 170
R++ + DL DA+ +EN D ++H A+ ++ + Y
Sbjct: 60 RERIEVVAGDLSEPRLGLSDAEWE--RLAENV-DTIVHNGAL-------VNWVYPYSELR 109
Query: 171 --NITSNTLVVLESMARHGVDTLIYSSTCA--TYGEPEKMPITEET---PQAPINPYGKA 223
N+ T VL A L Y ST + + + + T P Y ++
Sbjct: 110 GANVLG-TREVLRLAASGRAKPLHYVSTISVGAAIDLSTVTEDDATVTPPPGLAGGYAQS 168
Query: 224 KKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRL 259
K +AE +++ + + + V I+R ++G+ G +
Sbjct: 169 KWVAE-LLVREASDRGLPVTIVRPGRILGNSYTGAI 203
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 45/216 (20%), Positives = 82/216 (37%), Gaps = 45/216 (20%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIV------------DNL-SRGNIGAVKVLQELF 118
VL+TG G++G++ LLK I + L + + EL
Sbjct: 1 TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGLNLWDELE 60
Query: 119 PEPGRLQFIYADLGDAK---AVNKFFSE-NAFDAVMHFAA-VAYVGESTLDPLKYYH--- 170
R++ + DL + + + D ++H A V +V Y
Sbjct: 61 LS--RIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIHNGANVNWV--------YPYEELK 110
Query: 171 --NITSNTLVVLESMARHG-VDTLIYSSTCATYGEPEKMPITEETPQAPI-------NPY 220
N+ T +L+ +A G + L + ST + + E + +E + N Y
Sbjct: 111 PANVLG-TKELLK-LAATGKLKPLHFVSTLSVFSAEEYNALDDEESDDMLESQNGLPNGY 168
Query: 221 GKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPE 256
++K +AE ++ + + N + V I+R N I D E
Sbjct: 169 IQSKWVAEKLLREAA-NRGLPVAIIRPGN-IFGDSE 202
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.004
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNI-GAVKVLQELFPEPGRLQFIYADLG 132
LVTG IG A RL++D ++V IVD N A +L + G+ + AD+
Sbjct: 6 LVTGAGQGIGFAIAKRLVEDGFKVAIVDY----NEETAQAAADKLSKDGGKAIAVKADVS 61
Query: 133 DAKAVNKFFSENA-----FDAVMHFAAVA 156
D V + + V++ A VA
Sbjct: 62 DRDQVFAAVRQVVDTFGDLNVVVNNAGVA 90
|
Length = 256 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 413 | |||
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 100.0 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 100.0 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 100.0 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 100.0 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.97 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.97 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.96 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.96 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.95 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.95 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.94 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.94 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.94 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.94 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.94 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.94 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.93 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.93 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.93 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.93 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.93 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.93 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.93 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.93 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.93 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.93 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.93 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.93 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.93 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.93 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.92 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.92 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.92 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.92 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.92 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.92 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.92 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.92 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.92 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.91 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.91 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.91 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.91 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.91 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.91 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.91 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.91 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.91 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.91 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.91 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.91 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.91 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.91 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.9 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.9 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.9 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.9 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.9 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.9 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.9 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.9 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.9 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.9 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.9 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.9 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.9 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.9 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.89 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.89 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.89 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.89 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.89 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.89 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.89 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.89 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.89 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.89 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.89 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.89 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.89 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.89 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.89 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.89 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.89 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.88 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.88 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.88 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.88 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.88 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.88 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.88 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.88 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.88 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.88 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.88 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.88 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.88 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.88 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.88 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.88 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.88 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.88 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.88 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.87 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.87 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.87 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.87 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.87 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.87 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.86 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.86 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.86 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.86 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.86 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.86 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.86 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.86 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.85 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.85 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.85 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.85 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.84 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.84 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.84 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.84 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.84 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.84 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.84 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.83 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.83 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.83 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.83 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.82 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.81 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.81 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.81 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.81 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.81 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.8 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.8 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.8 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.8 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.79 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.78 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.75 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.75 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.74 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.73 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.71 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.7 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.69 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.65 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.64 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.64 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.61 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.6 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.48 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.44 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 99.43 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.31 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.31 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 99.29 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 99.25 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 99.21 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.21 | |
| PLN00106 | 323 | malate dehydrogenase | 99.14 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 99.12 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 99.09 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.79 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.74 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.7 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.68 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.59 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.57 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.49 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 98.49 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.43 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.41 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.35 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.3 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 98.25 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.25 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.15 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 98.15 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 98.09 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 98.06 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.98 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.98 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.93 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 97.92 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.89 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.88 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.86 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.8 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.78 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 97.74 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.73 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.73 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.72 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.7 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 97.69 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.63 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.62 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.58 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 97.57 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.56 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 97.53 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.51 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.46 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.46 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.44 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.41 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.39 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.37 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.36 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 97.36 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.36 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 97.35 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.35 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.34 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 97.33 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 97.3 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.3 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 97.3 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.28 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.28 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.27 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.26 | |
| PF08643 | 299 | DUF1776: Fungal family of unknown function (DUF177 | 97.26 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.24 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.21 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.19 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 97.19 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 97.18 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.16 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.13 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.05 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.05 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 97.03 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.02 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.99 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 96.99 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.99 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.98 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.98 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.98 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.97 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.95 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 96.91 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 96.88 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 96.85 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.84 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.83 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.81 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 96.78 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.77 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.75 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.72 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 96.72 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 96.7 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.67 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.63 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.57 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 96.57 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.56 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 96.56 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.54 | |
| PRK07411 | 390 | hypothetical protein; Validated | 96.51 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 96.49 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.47 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 96.46 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.45 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.44 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.44 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.43 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 96.42 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 96.4 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.39 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.39 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 96.38 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.38 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.35 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.35 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 96.29 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 96.2 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.19 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.19 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 96.17 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 96.16 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.08 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 96.05 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 96.02 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.01 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 96.0 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.0 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 95.96 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 95.96 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 95.94 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 95.93 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 95.93 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.92 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 95.85 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.82 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 95.82 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 95.77 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 95.75 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.69 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 95.69 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 95.68 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 95.68 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 95.68 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 95.65 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 95.62 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 95.62 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 95.61 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 95.61 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 95.55 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.52 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 95.52 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.5 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.47 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 95.47 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.46 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 95.45 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 95.45 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 95.44 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.43 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 95.43 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 95.41 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.41 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.39 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 95.34 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 95.31 | |
| PRK12767 | 326 | carbamoyl phosphate synthase-like protein; Provisi | 95.29 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 95.28 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 95.27 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.26 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 95.26 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 95.23 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 95.14 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.12 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 95.12 | |
| PF12242 | 78 | Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2 | 95.1 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 95.09 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.08 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 95.06 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.05 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 95.04 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 95.0 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 94.97 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 94.96 | |
| COG2099 | 257 | CobK Precorrin-6x reductase [Coenzyme metabolism] | 94.93 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.9 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 94.86 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 94.86 | |
| PLN02928 | 347 | oxidoreductase family protein | 94.84 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 94.83 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.77 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 94.77 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 94.74 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.72 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 94.72 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 94.72 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 94.71 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 94.7 |
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-57 Score=403.92 Aligned_cols=327 Identities=46% Similarity=0.748 Sum_probs=305.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+|+||+|.+.+|++.|++|+++|+............ .+.++++|+.|.+.+.+++++.++|.||
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~--------~~~f~~gDi~D~~~L~~vf~~~~idaVi 72 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL--------QFKFYEGDLLDRALLTAVFEENKIDAVV 72 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc--------cCceEEeccccHHHHHHHHHhcCCCEEE
Confidence 57999999999999999999999999999998877665443221 1689999999999999999999999999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
|.||....+.+.+.|..+++.|+.||..|+++|++.++++|||.||+++||.+...|+.|+.|..|.++|+.||++.|.+
T Consensus 73 HFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~~~~~p~NPYG~sKlm~E~i 152 (329)
T COG1087 73 HFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISETSPLAPINPYGRSKLMSEEI 152 (329)
T ss_pred ECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCCCCCCCCCcchhHHHHHHHH
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHH
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~ 310 (413)
++.+++.+++++++||..++.|..+++.+|+.+.+.. .+++.+.+.+.+..+.+.++|..+.+++|...||||||.
T Consensus 153 L~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~t----hLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~ 228 (329)
T COG1087 153 LRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGAT----LLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVD 228 (329)
T ss_pred HHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcc----hHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehh
Confidence 9999999999999999999999999999999998875 899999999999888899999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCC-CccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCcccccc
Q 015080 311 DLVDAHVKALERAQPK-KVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYT 389 (413)
Q Consensus 311 Dva~a~~~~~~~~~~~-~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~ 389 (413)
|+|+|++.+++.-..+ ...+||+++|.-.|+.|+++++.+..|.+.+....+.+++++..++.|.+|++++|||+|+++
T Consensus 229 DLA~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~RR~GDpa~l~Ad~~kA~~~Lgw~p~~~ 308 (329)
T COG1087 229 DLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPRRAGDPAILVADSSKARQILGWQPTYD 308 (329)
T ss_pred HHHHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCCCCCCCCceeEeCHHHHHHHhCCCcccC
Confidence 9999999999953322 225999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHH-hccCCC
Q 015080 390 NLQESLEIAWRWQK-SHRGGY 409 (413)
Q Consensus 390 ~~~e~l~~~~~~~~-~~~~~~ 409 (413)
++++.+++..+|.. +++++|
T Consensus 309 ~L~~ii~~aw~W~~~~~~~g~ 329 (329)
T COG1087 309 DLEDIIKDAWDWHQQRHGDGY 329 (329)
T ss_pred CHHHHHHHHHHHhhhhcCCCC
Confidence 99999999999998 777765
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-52 Score=368.49 Aligned_cols=314 Identities=26% Similarity=0.365 Sum_probs=283.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|++|||||.||||+++++.++++.. +|+++|...- ....+.+..+... ++..|+++|+.|.+.+.+++++..+|+
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTY--Agn~~~l~~~~~~-~~~~fv~~DI~D~~~v~~~~~~~~~D~ 77 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTY--AGNLENLADVEDS-PRYRFVQGDICDRELVDRLFKEYQPDA 77 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccc--cCCHHHHHhhhcC-CCceEEeccccCHHHHHHHHHhcCCCe
Confidence 5799999999999999999999854 5788775432 2233444444333 689999999999999999998888999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccceecCCCCCC--CCCCCCCCCCCChhHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSSTCATYGEPEKM--PITEETPQAPINPYGKAKK 225 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS~~~~~~~~~~--~~~e~~~~~~~~~Y~~sK~ 225 (413)
|+|.|+-++.+.+..+|+.+.++|+.||.+||+++++...+ |++++|+..|||..... .++|++|..|.+||++||+
T Consensus 78 VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKA 157 (340)
T COG1088 78 VVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKA 157 (340)
T ss_pred EEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCCCCCcchhhh
Confidence 99999999999999999999999999999999999998754 99999999999987553 6899999999999999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeee
Q 015080 226 MAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRD 305 (413)
Q Consensus 226 ~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 305 (413)
+++.+++++.+.+|+++++.|+++-|||.+-++ .++|.++..+..+++ +++.| +|.+.||
T Consensus 158 asD~lVray~~TYglp~~ItrcSNNYGPyqfpE-------------KlIP~~I~nal~g~~-lpvYG------dG~~iRD 217 (340)
T COG1088 158 ASDLLVRAYVRTYGLPATITRCSNNYGPYQFPE-------------KLIPLMIINALLGKP-LPVYG------DGLQIRD 217 (340)
T ss_pred hHHHHHHHHHHHcCCceEEecCCCCcCCCcCch-------------hhhHHHHHHHHcCCC-Cceec------CCcceee
Confidence 999999999999999999999999999987554 899999999999988 99999 9999999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCce-----eEecCCCCCCccccccCHHHHHH
Q 015080 306 YIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIK-----VIYEPRRPGDYAEVYSDPTKIRL 380 (413)
Q Consensus 306 ~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~-----~~~~~~~~~~~~~~~~d~~k~~~ 380 (413)
|+||+|-|+|+..++.++..+ ++|||+++...+--|+++.|++.+|++.+ +.++..+++......+|.+|+++
T Consensus 218 Wl~VeDh~~ai~~Vl~kg~~G--E~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~DRpGHD~RYaid~~Ki~~ 295 (340)
T COG1088 218 WLYVEDHCRAIDLVLTKGKIG--ETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHDRRYAIDASKIKR 295 (340)
T ss_pred eEEeHhHHHHHHHHHhcCcCC--ceEEeCCCccchHHHHHHHHHHHhCccccchhhheEeccCCCCCccceeechHHHhh
Confidence 999999999999999988875 89999999999999999999999999888 88899999888889999999999
Q ss_pred hcCcccccccHHHHHHHHHHHHHhccCCCc
Q 015080 381 ELNWTAKYTNLQESLEIAWRWQKSHRGGYA 410 (413)
Q Consensus 381 ~lG~~p~~~~~~e~l~~~~~~~~~~~~~~~ 410 (413)
+|||.|++ +|+++|+++++||++++.+.+
T Consensus 296 eLgW~P~~-~fe~GlrkTv~WY~~N~~Ww~ 324 (340)
T COG1088 296 ELGWRPQE-TFETGLRKTVDWYLDNEWWWE 324 (340)
T ss_pred hcCCCcCC-CHHHHHHHHHHHHHhchHHHh
Confidence 99999998 999999999999999887654
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=369.39 Aligned_cols=318 Identities=25% Similarity=0.353 Sum_probs=255.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhh-hcC-CCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQE-LFP-EPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|||||||||||++|+++|+++|++|++++|...........+.. ... ...++.++.+|++|.+.+.+++ .++|+
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~--~~~d~ 93 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKAC--KNVDY 93 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh--hCCCE
Confidence 8999999999999999999999999999999865433222111111 000 0135889999999999999998 57999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
|||+|+.........++...+++|+.|+.++++++++.+++++||+||+++||.....+..|+.+..|.++|+.||.++|
T Consensus 94 ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~p~~~Y~~sK~~~e 173 (348)
T PRK15181 94 VLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEERIGRPLSPYAVTKYVNE 173 (348)
T ss_pred EEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCCCCCCCCChhhHHHHHHH
Confidence 99999986655555677888999999999999999999999999999999999766667778777888899999999999
Q ss_pred HHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeeccc
Q 015080 229 DIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308 (413)
Q Consensus 229 ~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~ 308 (413)
.+++.+.+++|++++++||++||||++.+... .+.+++.++..+..+.+ +.++| ++.+.++|+|
T Consensus 174 ~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~---------~~~~i~~~~~~~~~~~~-i~~~g------~g~~~rd~i~ 237 (348)
T PRK15181 174 LYADVFARSYEFNAIGLRYFNVFGRRQNPNGA---------YSAVIPRWILSLLKDEP-IYING------DGSTSRDFCY 237 (348)
T ss_pred HHHHHHHHHhCCCEEEEEecceeCcCCCCCCc---------cccCHHHHHHHHHcCCC-cEEeC------CCCceEeeEE
Confidence 99999888889999999999999997532110 01467777777766666 77777 8999999999
Q ss_pred HHHHHHHHHHHHHhcCC-CCccEEEecCCCcccHHHHHHHHHHHcCCCc------eeEecCCCCCCccccccCHHHHHHh
Q 015080 309 VNDLVDAHVKALERAQP-KKVGIYNVGTGKGRSVKEFVEACKKATSANI------KVIYEPRRPGDYAEVYSDPTKIRLE 381 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~------~~~~~~~~~~~~~~~~~d~~k~~~~ 381 (413)
++|+|++++.++..... ..+++||+++++.+|+.|+++.+.+.++... .+...+..+.......+|++|++++
T Consensus 238 v~D~a~a~~~~~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 317 (348)
T PRK15181 238 IENVIQANLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQADITKIKTF 317 (348)
T ss_pred HHHHHHHHHHHHhcccccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCcccCCCCCCcccccccCHHHHHHH
Confidence 99999999988764321 2347999999999999999999999987321 1222333334444667899999999
Q ss_pred cCcccccccHHHHHHHHHHHHHhccC
Q 015080 382 LNWTAKYTNLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 382 lG~~p~~~~~~e~l~~~~~~~~~~~~ 407 (413)
|||.|++ +++|+|+++++|++.+.+
T Consensus 318 lGw~P~~-sl~egl~~~~~w~~~~~~ 342 (348)
T PRK15181 318 LSYEPEF-DIKEGLKQTLKWYIDKHS 342 (348)
T ss_pred hCCCCCC-CHHHHHHHHHHHHHHhcc
Confidence 9999999 999999999999988754
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=342.05 Aligned_cols=337 Identities=52% Similarity=0.823 Sum_probs=311.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
++||||||.||||+|.+.+|+++|+.|+++|+..+......+.++++...+..+.++++|++|.+.++++++..++|.|+
T Consensus 3 ~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V~ 82 (343)
T KOG1371|consen 3 KHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAVM 82 (343)
T ss_pred cEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceEE
Confidence 78999999999999999999999999999999999888888888888887789999999999999999999999999999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCC-CCChhHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAED 229 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~-~~~~Y~~sK~~~e~ 229 (413)
|.|+....+++.+++..+.+.|+.|+.++|+.|++.+++.+||.||+.+||.+...|++|+.+.. |.++|+.+|.+.|.
T Consensus 83 Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~~~t~~p~~pyg~tK~~iE~ 162 (343)
T KOG1371|consen 83 HFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEEDPTDQPTNPYGKTKKAIEE 162 (343)
T ss_pred eehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCcCCCCCCCCcchhhhHHHHH
Confidence 99999888889999999999999999999999999999999999999999999999999999988 99999999999999
Q ss_pred HHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccH
Q 015080 230 IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 230 ~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
.+..+....+..++.||.++++|..+.+..++.+. .-++.+++.+.+.+....+.+.+.|..+.+-+++..++++|+
T Consensus 163 i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~---~~~nnl~p~v~~vaigr~~~l~v~g~d~~t~dgt~vrdyi~v 239 (343)
T KOG1371|consen 163 IIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPL---GIPNNLLPYVFQVAIGRRPNLQVVGRDYTTIDGTIVRDYIHV 239 (343)
T ss_pred HHHhhhccccceEEEEEeccccCccccCccCCCCc---cCcccccccccchhhcccccceeecCcccccCCCeeecceee
Confidence 99999988889999999999999777777776553 334577777777777777779999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCccccc
Q 015080 310 NDLVDAHVKALERAQP-KKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKY 388 (413)
Q Consensus 310 ~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 388 (413)
-|.|+.++.++..... ...++||++++...++.++..+++++.|.+.++..++.+.++....+.+.++++++|||+|.+
T Consensus 240 ~Dla~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~R~gdv~~~ya~~~~a~~elgwk~~~ 319 (343)
T KOG1371|consen 240 LDLADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPRRNGDVAFVYANPSKAQRELGWKAKY 319 (343)
T ss_pred EehHHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCCCCCCceeeeeChHHHHHHhCCcccc
Confidence 9999999999996543 334699999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhccCCCcc
Q 015080 389 TNLQESLEIAWRWQKSHRGGYAS 411 (413)
Q Consensus 389 ~~~~e~l~~~~~~~~~~~~~~~~ 411 (413)
++++++++.++|..+++.+|++
T Consensus 320 -~iee~c~dlw~W~~~np~gy~~ 341 (343)
T KOG1371|consen 320 -GLQEMLKDLWRWQKQNPSGYDT 341 (343)
T ss_pred -CHHHHHHHHHHHHhcCCCcCCC
Confidence 8999999999999999999964
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=357.57 Aligned_cols=340 Identities=43% Similarity=0.723 Sum_probs=271.8
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcC-CCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
+++ |+|||||||||||++|+++|+++|++|++++|..++.......+..... .+.++.++.+|++|++++.+++++.+
T Consensus 3 ~~~-~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~ 81 (352)
T PLN02240 3 LMG-RTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR 81 (352)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence 445 8999999999999999999999999999998754433322222222211 12468899999999999999987668
Q ss_pred CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHH
Q 015080 146 FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKK 225 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~ 225 (413)
+|+|||+||.........++...+++|+.++.++++++++.+++++|++||+++|+.....+++|+.+..|.++|+.||.
T Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~ 161 (352)
T PLN02240 82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEEFPLSATNPYGRTKL 161 (352)
T ss_pred CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCCCCCCCCHHHHHHH
Confidence 99999999976444444567889999999999999999998889999999999998776678999999999999999999
Q ss_pred HHHHHHHHHHhh-CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceee
Q 015080 226 MAEDIILDFSKN-SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304 (413)
Q Consensus 226 ~~e~~~~~~~~~-~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 304 (413)
++|.+++.++.+ .+++++++|++++||+++...+|+.+.... ..+.+.+.....+..+.+.+.|.....+++.+.+
T Consensus 162 ~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 238 (352)
T PLN02240 162 FIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIP---NNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGVR 238 (352)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCc---chHHHHHHHHHhCCCCceEEeCCCCCCCCCCEEE
Confidence 999999988754 689999999999999876555444321100 1344444444444344466776555556789999
Q ss_pred ecccHHHHHHHHHHHHHhc---CCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHh
Q 015080 305 DYIDVNDLVDAHVKALERA---QPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLE 381 (413)
Q Consensus 305 ~~i~v~Dva~a~~~~~~~~---~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 381 (413)
+|+|++|+|++++.++++. ....+++||+++++++|+.|+++.+.+.+|.+.++...+....+......|++|++++
T Consensus 239 ~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 318 (352)
T PLN02240 239 DYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPRRPGDAEEVYASTEKAEKE 318 (352)
T ss_pred eeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCCCCCChhhhhcCHHHHHHH
Confidence 9999999999999988742 1222379999999999999999999999998888777766666656667899999999
Q ss_pred cCcccccccHHHHHHHHHHHHHhccCCCcc
Q 015080 382 LNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411 (413)
Q Consensus 382 lG~~p~~~~~~e~l~~~~~~~~~~~~~~~~ 411 (413)
|||+|++ +++|+|+++++|++++..+|.+
T Consensus 319 lg~~p~~-~l~~~l~~~~~~~~~~~~~~~~ 347 (352)
T PLN02240 319 LGWKAKY-GIDEMCRDQWNWASKNPYGYGS 347 (352)
T ss_pred hCCCCCC-CHHHHHHHHHHHHHhCccccCC
Confidence 9999998 8999999999999999998865
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=351.01 Aligned_cols=334 Identities=39% Similarity=0.681 Sum_probs=266.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+||||++++++|+++|++|++++|..++.......+.+.. +.++.++.+|++|.+++.++++..++|+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv 78 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALLTEILHDHAIDTVI 78 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhc--CCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence 479999999999999999999999999998865444333222222221 235778899999999999998766899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC-CCCChhHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ-APINPYGKAKKMAED 229 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~-~~~~~Y~~sK~~~e~ 229 (413)
|+||..........+...+++|+.++.+++++|++.++++||++||.++|+.....+++|+.+. .|.++|+.+|.++|.
T Consensus 79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~ 158 (338)
T PRK10675 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQ 158 (338)
T ss_pred ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCccccccCCCCCCChhHHHHHHHHH
Confidence 9999765433344567789999999999999999999999999999999987766678888886 678999999999999
Q ss_pred HHHHHHhh-CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeeccc
Q 015080 230 IILDFSKN-SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308 (413)
Q Consensus 230 ~~~~~~~~-~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~ 308 (413)
+++.++++ .+++++++|++.+|||.+.+.+|+.+.... ..+.+.+.....+..+.+.++|..+..+++.+.++|+|
T Consensus 159 ~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~ 235 (338)
T PRK10675 159 ILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIP---NNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235 (338)
T ss_pred HHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCCh---hHHHHHHHHHHhcCCCceEEeCCcCCCCCCcEEEeeEE
Confidence 99998765 489999999999999976655554322110 13445555544444444667765555567889999999
Q ss_pred HHHHHHHHHHHHHhcC-CCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCcccc
Q 015080 309 VNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAK 387 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 387 (413)
++|+|++++.+++... ...+++||+++++++|+.|+++.+.+.+|.+.++...+....+.....+|++|++++|||+|+
T Consensus 236 v~D~a~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~k~~~~lg~~p~ 315 (338)
T PRK10675 236 VMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVT 315 (338)
T ss_pred HHHHHHHHHHHHHhhhccCCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCCCCCCchhhhhcCHHHHHHHhCCCCc
Confidence 9999999999998521 122369999999999999999999999998877776665555555677899999999999999
Q ss_pred cccHHHHHHHHHHHHHhccCCCc
Q 015080 388 YTNLQESLEIAWRWQKSHRGGYA 410 (413)
Q Consensus 388 ~~~~~e~l~~~~~~~~~~~~~~~ 410 (413)
+ +++++|+++++|+++++++|-
T Consensus 316 ~-~~~~~~~~~~~~~~~~~~~~~ 337 (338)
T PRK10675 316 R-TLDEMAQDTWHWQSRHPQGYP 337 (338)
T ss_pred C-cHHHHHHHHHHHHHhhhhccC
Confidence 8 999999999999999988774
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-45 Score=351.55 Aligned_cols=312 Identities=23% Similarity=0.334 Sum_probs=248.4
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEE-EEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
||+|||||||||||+++++.|+++|++|+ ++++... ..... .+..+.. ..++.++.+|++|.+++.+++++.++|+
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~-~~~~~-~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~D~ 77 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTY-AGNLM-SLAPVAQ-SERFAFEKVDICDRAELARVFTEHQPDC 77 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCcc-ccchh-hhhhccc-CCceEEEECCCcChHHHHHHHhhcCCCE
Confidence 58999999999999999999999998755 4444321 11111 1111111 2467889999999999999997667999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc---------CCCEEEEeccceecCCCC--CCCCCCCCCCCCC
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH---------GVDTLIYSSTCATYGEPE--KMPITEETPQAPI 217 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---------~~~~iV~~SS~~~~~~~~--~~~~~e~~~~~~~ 217 (413)
||||||........+.+...+++|+.++.++++++++. +++++|++||.++|+... ..+++|+.+..|.
T Consensus 78 Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~~~~p~ 157 (355)
T PRK10217 78 VMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPS 157 (355)
T ss_pred EEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCCCCCCC
Confidence 99999976544344567889999999999999999862 457999999999998642 3468888888889
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccC
Q 015080 218 NPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST 297 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 297 (413)
+.|+.||.++|.+++.++++++++++++||+++|||+..+. .+++.++..+..+.+ ++++|
T Consensus 158 s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~-------------~~~~~~~~~~~~~~~-~~~~g----- 218 (355)
T PRK10217 158 SPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPE-------------KLIPLMILNALAGKP-LPVYG----- 218 (355)
T ss_pred ChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcc-------------cHHHHHHHHHhcCCC-ceEeC-----
Confidence 99999999999999999888999999999999999974321 566767666666655 67777
Q ss_pred CCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCce------------eEecCCCC
Q 015080 298 ADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIK------------VIYEPRRP 365 (413)
Q Consensus 298 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~------------~~~~~~~~ 365 (413)
++++.++|+|++|+|++++.+++.... +++||+++++.+|+.|+++.+.+.+|...+ +...+..+
T Consensus 219 -~g~~~~~~i~v~D~a~a~~~~~~~~~~--~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (355)
T PRK10217 219 -NGQQIRDWLYVEDHARALYCVATTGKV--GETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRP 295 (355)
T ss_pred -CCCeeeCcCcHHHHHHHHHHHHhcCCC--CCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecCCCC
Confidence 899999999999999999999986543 379999999999999999999999985322 11122223
Q ss_pred CCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccC
Q 015080 366 GDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 366 ~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 407 (413)
.....+.+|++|++++|||+|++ +++|+|+++++||+.+.+
T Consensus 296 ~~~~~~~~d~~k~~~~lg~~p~~-~l~e~l~~~~~~~~~~~~ 336 (355)
T PRK10217 296 GHDLRYAIDASKIARELGWLPQE-TFESGMRKTVQWYLANES 336 (355)
T ss_pred CCCcccccCHHHHHHhcCCCCcC-cHHHHHHHHHHHHHhCHH
Confidence 33445678999999999999998 999999999999988755
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=352.63 Aligned_cols=304 Identities=27% Similarity=0.410 Sum_probs=249.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++|+++|+++|++|++++|....... ........ .+++++.+|+.+.. + .++|+||
T Consensus 121 mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~---~~~~~~~~-~~~~~~~~Di~~~~-----~--~~~D~Vi 189 (436)
T PLN02166 121 LRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKE---NLVHLFGN-PRFELIRHDVVEPI-----L--LEVDQIY 189 (436)
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHh---HhhhhccC-CceEEEECcccccc-----c--cCCCEEE
Confidence 789999999999999999999999999999875432211 11111111 46788999997753 3 4799999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC-----CCCCCChhHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET-----PQAPINPYGKAKK 225 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~-----~~~~~~~Y~~sK~ 225 (413)
|+|+...+.....++...+++|+.++.+++++|++.+. ++|++||.++||.....+.+|+. |..|.+.|+.+|.
T Consensus 190 HlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~ 268 (436)
T PLN02166 190 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKR 268 (436)
T ss_pred ECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHHH
Confidence 99997655444457788999999999999999999875 99999999999977656677763 5667788999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeee
Q 015080 226 MAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRD 305 (413)
Q Consensus 226 ~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 305 (413)
++|.+++.+.++++++++++||++||||+.... .+.+++.++..+..+.+ +.+.| ++.+.++
T Consensus 269 ~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~-----------~~~~i~~~i~~~l~~~~-i~v~g------~g~~~rd 330 (436)
T PLN02166 269 TAETLAMDYHRGAGVEVRIARIFNTYGPRMCLD-----------DGRVVSNFVAQTIRKQP-MTVYG------DGKQTRS 330 (436)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEccccCCCCCCC-----------ccchHHHHHHHHhcCCC-cEEeC------CCCeEEe
Confidence 999999999888899999999999999974311 12566667777776666 77777 8889999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCcc
Q 015080 306 YIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWT 385 (413)
Q Consensus 306 ~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 385 (413)
|+|++|+|++++.+++... .++||+++++.+|+.|+++.+.+.+|.+.++.+.+....+.....+|++|++++|||+
T Consensus 331 fi~V~Dva~ai~~~~~~~~---~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~~~~~~~~~~~d~~Ka~~~LGw~ 407 (436)
T PLN02166 331 FQYVSDLVDGLVALMEGEH---VGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPNTADDPHKRKPDISKAKELLNWE 407 (436)
T ss_pred eEEHHHHHHHHHHHHhcCC---CceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCCCCCCccccccCHHHHHHHcCCC
Confidence 9999999999999987543 2599999999999999999999999988777776665555566788999999999999
Q ss_pred cccccHHHHHHHHHHHHHhccCC
Q 015080 386 AKYTNLQESLEIAWRWQKSHRGG 408 (413)
Q Consensus 386 p~~~~~~e~l~~~~~~~~~~~~~ 408 (413)
|++ +++++|+++++||+.+..+
T Consensus 408 P~~-sl~egl~~~i~~~~~~~~~ 429 (436)
T PLN02166 408 PKI-SLREGLPLMVSDFRNRILN 429 (436)
T ss_pred CCC-CHHHHHHHHHHHHHHHhcC
Confidence 998 8999999999999877543
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=345.92 Aligned_cols=314 Identities=22% Similarity=0.241 Sum_probs=246.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCC--chhhhhhhhhcC-CCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN--IGAVKVLQELFP-EPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
|+||||||+||||++|+++|++.|++|++++|..... ............ .+.++.++.+|++|.+++.++++..++|
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 80 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT 80 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence 5899999999999999999999999999998865421 111111111100 1246889999999999999999766789
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC---EEEEeccceecCCCCCCCCCCCCCCCCCChhHHHH
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD---TLIYSSTCATYGEPEKMPITEETPQAPINPYGKAK 224 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~---~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK 224 (413)
+|||+|+..........+...+++|+.|+.+++++|++.+++ ++||+||.++||.....+++|+.+..|.++|+.||
T Consensus 81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK 160 (343)
T TIGR01472 81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNETTPFYPRSPYAAAK 160 (343)
T ss_pred EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCCCCCCCCChhHHHH
Confidence 999999986554444556778889999999999999987753 89999999999976666788999988999999999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceee
Q 015080 225 KMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304 (413)
Q Consensus 225 ~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 304 (413)
.++|.+++.+++++|++++..|+.++|||+..... ....+..++..+..+.+...+.| ++++.+
T Consensus 161 ~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~g------~g~~~r 224 (343)
T TIGR01472 161 LYAHWITVNYREAYGLFAVNGILFNHESPRRGENF----------VTRKITRAAAKIKLGLQEKLYLG------NLDAKR 224 (343)
T ss_pred HHHHHHHHHHHHHhCCceEEEeecccCCCCCCccc----------cchHHHHHHHHHHcCCCCceeeC------CCcccc
Confidence 99999999998888999999999999998632110 00233444444444443234445 788999
Q ss_pred ecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCcee-------------------Ee--cCC
Q 015080 305 DYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKV-------------------IY--EPR 363 (413)
Q Consensus 305 ~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~-------------------~~--~~~ 363 (413)
+|+||+|+|++++.+++++.. ++|||++++++|+.|+++.+.+.+|.+.++ .. .+.
T Consensus 225 d~i~V~D~a~a~~~~~~~~~~---~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (343)
T TIGR01472 225 DWGHAKDYVEAMWLMLQQDKP---DDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPRYF 301 (343)
T ss_pred CceeHHHHHHHHHHHHhcCCC---ccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCcccc
Confidence 999999999999999986432 589999999999999999999999976431 11 112
Q ss_pred CCCCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHh
Q 015080 364 RPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKS 404 (413)
Q Consensus 364 ~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~ 404 (413)
.+.+......|++|++++|||+|++ +++|+|+++++||++
T Consensus 302 ~~~~~~~~~~d~~k~~~~lgw~p~~-~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 302 RPTEVDLLLGDATKAKEKLGWKPEV-SFEKLVKEMVEEDLE 341 (343)
T ss_pred CCCccchhcCCHHHHHHhhCCCCCC-CHHHHHHHHHHHHHh
Confidence 3344455678999999999999999 999999999999984
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-44 Score=342.72 Aligned_cols=318 Identities=22% Similarity=0.258 Sum_probs=250.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCc-hhhhhhh-hhcCCCCceEEEEccCCCHHHHHHHhhcC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNI-GAVKVLQ-ELFPEPGRLQFIYADLGDAKAVNKFFSEN 144 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~-~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 144 (413)
.++ |+||||||+||||++|+++|+++|++|++++|...... ...+.+. .....+.++.++.+|++|.+++.++++..
T Consensus 4 ~~~-~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 82 (340)
T PLN02653 4 PPR-KVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI 82 (340)
T ss_pred CCC-CEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence 345 88999999999999999999999999999987543211 1111111 11111246889999999999999999766
Q ss_pred CCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-----EEEEeccceecCCCCCCCCCCCCCCCCCCh
Q 015080 145 AFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-----TLIYSSTCATYGEPEKMPITEETPQAPINP 219 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-----~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~ 219 (413)
.+|+||||||..........+...+++|+.++.++++++++.+.+ ++|++||.++||.... +++|+.+..|.++
T Consensus 83 ~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~~~~~p~~~ 161 (340)
T PLN02653 83 KPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSETTPFHPRSP 161 (340)
T ss_pred CCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCCCCCCCCCh
Confidence 799999999986554445567778899999999999999988764 8999999999997665 7889999999999
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCC
Q 015080 220 YGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTAD 299 (413)
Q Consensus 220 Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 299 (413)
|+.||.++|.+++.+++++++.++..|+.++|||+....+ ...++..++..+..+.+.....| +
T Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~g------~ 225 (340)
T PLN02653 162 YAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENF----------VTRKITRAVGRIKVGLQKKLFLG------N 225 (340)
T ss_pred hHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCccc----------chhHHHHHHHHHHcCCCCceEeC------C
Confidence 9999999999999999889999999999999998632110 00334444555555554223335 7
Q ss_pred CceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCC--ceeEecC--CCCCCccccccCH
Q 015080 300 GTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSAN--IKVIYEP--RRPGDYAEVYSDP 375 (413)
Q Consensus 300 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~--~~~~~~~--~~~~~~~~~~~d~ 375 (413)
+++.++|+|++|+|++++.+++... +++||+++++++|+.|+++.+.+.+|.+ ..+...+ ..+.+.....+|+
T Consensus 226 g~~~rd~i~v~D~a~a~~~~~~~~~---~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 302 (340)
T PLN02653 226 LDASRDWGFAGDYVEAMWLMLQQEK---PDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDA 302 (340)
T ss_pred CcceecceeHHHHHHHHHHHHhcCC---CCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCH
Confidence 8999999999999999999998643 2589999999999999999999999964 2222222 2344455667899
Q ss_pred HHHHHhcCcccccccHHHHHHHHHHHHHhcc
Q 015080 376 TKIRLELNWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 376 ~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
+|++++|||+|++ +++|+|+++++||+...
T Consensus 303 ~k~~~~lgw~p~~-~l~~gi~~~~~~~~~~~ 332 (340)
T PLN02653 303 SKAREVLGWKPKV-GFEQLVKMMVDEDLELA 332 (340)
T ss_pred HHHHHHhCCCCCC-CHHHHHHHHHHHHHHhc
Confidence 9999999999999 99999999999998653
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=342.09 Aligned_cols=313 Identities=22% Similarity=0.280 Sum_probs=251.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+||||+++++.|+++|++|++++|.........+.+. ...++.++.+|++|.+++.+++++.++|+||
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 80 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN----LAKKIEDHFGDIRDAAKLRKAIAEFKPEIVF 80 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh----hcCCceEEEccCCCHHHHHHHHhhcCCCEEE
Confidence 899999999999999999999999999999876543322222221 1246778999999999999999776799999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccceecCCCCC-CCCCCCCCCCCCChhHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VDTLIYSSTCATYGEPEK-MPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~iV~~SS~~~~~~~~~-~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
|+||.........++...+++|+.++.++++++++.+ ++++|++||..+|+.... .+++|+.+..|.++|+.||.++|
T Consensus 81 h~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p~~~Y~~sK~~~e 160 (349)
T TIGR02622 81 HLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDPYSSSKACAE 160 (349)
T ss_pred ECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCCCCcchhHHHHHH
Confidence 9999755544556778899999999999999998876 789999999999986532 35778888888999999999999
Q ss_pred HHHHHHHhhC-------CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCc
Q 015080 229 DIILDFSKNS-------DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGT 301 (413)
Q Consensus 229 ~~~~~~~~~~-------gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 301 (413)
.+++.+++++ |++++++||+.+|||+... .+.+++.++..+..+.+ +.+. +++
T Consensus 161 ~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~------------~~~~~~~~~~~~~~g~~-~~~~-------~g~ 220 (349)
T TIGR02622 161 LVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWA------------EDRLIPDVIRAFSSNKI-VIIR-------NPD 220 (349)
T ss_pred HHHHHHHHHhhcccccCCCcEEEEccCcccCCCcch------------hhhhhHHHHHHHhcCCC-eEEC-------CCC
Confidence 9999887764 8999999999999996321 01567788888877765 5553 678
Q ss_pred eeeecccHHHHHHHHHHHHHhcC---CCCccEEEecCC--CcccHHHHHHHHHHHcC-CCceeEec--CCCCCCcccccc
Q 015080 302 CVRDYIDVNDLVDAHVKALERAQ---PKKVGIYNVGTG--KGRSVKEFVEACKKATS-ANIKVIYE--PRRPGDYAEVYS 373 (413)
Q Consensus 302 ~~~~~i~v~Dva~a~~~~~~~~~---~~~~~~yni~~~--~~~s~~e~~~~i~~~~g-~~~~~~~~--~~~~~~~~~~~~ 373 (413)
+.++|+|++|+|++++.+++... ...+++||++++ +++++.++++.+.+.++ .+..+... +....+......
T Consensus 221 ~~rd~i~v~D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T TIGR02622 221 ATRPWQHVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLKL 300 (349)
T ss_pred cccceeeHHHHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceeec
Confidence 99999999999999999887521 112369999875 68999999999998876 34444332 223344455678
Q ss_pred CHHHHHHhcCcccccccHHHHHHHHHHHHHhccCC
Q 015080 374 DPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGG 408 (413)
Q Consensus 374 d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~ 408 (413)
|++|++++|||+|++ +++++|+++++|++++.++
T Consensus 301 d~~k~~~~lgw~p~~-~l~~gi~~~i~w~~~~~~~ 334 (349)
T TIGR02622 301 DSSKARTLLGWHPRW-GLEEAVSRTVDWYKAWLRG 334 (349)
T ss_pred CHHHHHHHhCCCCCC-CHHHHHHHHHHHHHHHhcC
Confidence 999999999999999 9999999999999988665
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=342.93 Aligned_cols=313 Identities=20% Similarity=0.325 Sum_probs=244.6
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCC-CHHHHHHHhhcCCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG-DAKAVNKFFSENAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-d~~~~~~~~~~~~~d 147 (413)
||+|||||||||||++|+++|++. |++|++++|.... . ..+... .+++++.+|++ +.+.+.+++ .++|
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~---~----~~~~~~-~~~~~~~~Dl~~~~~~~~~~~--~~~d 70 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDR---L----GDLVNH-PRMHFFEGDITINKEWIEYHV--KKCD 70 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHH---H----HHhccC-CCeEEEeCCCCCCHHHHHHHH--cCCC
Confidence 588999999999999999999987 7999999864321 1 111111 46899999998 778888887 5799
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC-------CCCChh
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ-------APINPY 220 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~-------~~~~~Y 220 (413)
+|||+|+...+.....++...+++|+.++.++++++++.+ +++||+||..+||.....+++|+.+. .|.+.|
T Consensus 71 ~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y 149 (347)
T PRK11908 71 VILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIY 149 (347)
T ss_pred EEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-CeEEEEecceeeccCCCcCcCccccccccCcCCCccchH
Confidence 9999999866555566788889999999999999999887 79999999999987655566665431 356689
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCC
Q 015080 221 GKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300 (413)
Q Consensus 221 ~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 300 (413)
+.||.++|.+++.++.+++++++++||+.+|||+..+..... .....+++.++..+..+.+ +.+.+ ++
T Consensus 150 ~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~-~~~~~------~g 217 (347)
T PRK11908 150 ACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPK-----EGSSRVVTQFLGHIVRGEP-ISLVD------GG 217 (347)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccc-----cCCcchHHHHHHHHhCCCc-eEEec------CC
Confidence 999999999999998889999999999999999754211100 0112567777877777766 67766 78
Q ss_pred ceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC-cccHHHHHHHHHHHcCCCcee---------EecCCC-----
Q 015080 301 TCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK-GRSVKEFVEACKKATSANIKV---------IYEPRR----- 364 (413)
Q Consensus 301 ~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~-~~s~~e~~~~i~~~~g~~~~~---------~~~~~~----- 364 (413)
++.++|+|++|+|++++.++++... ..+++||+++++ .+|+.|+++.+.+.+|....+ ...+..
T Consensus 218 ~~~r~~i~v~D~a~a~~~~~~~~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (347)
T PRK11908 218 SQKRAFTDIDDGIDALMKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYYGK 297 (347)
T ss_pred ceeeccccHHHHHHHHHHHHhCccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhccCc
Confidence 8999999999999999999987531 234799999874 799999999999999854332 111110
Q ss_pred -CCCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhcc
Q 015080 365 -PGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 365 -~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
.........|++|++++|||+|++ +++++|+++++|++++.
T Consensus 298 ~~~~~~~~~~d~~k~~~~lGw~p~~-~l~~~l~~~~~~~~~~~ 339 (347)
T PRK11908 298 GYQDVQNRVPKIDNTMQELGWAPKT-TMDDALRRIFEAYRGHV 339 (347)
T ss_pred CcchhccccCChHHHHHHcCCCCCC-cHHHHHHHHHHHHHHHH
Confidence 112234556899999999999999 89999999999998764
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=345.74 Aligned_cols=301 Identities=27% Similarity=0.414 Sum_probs=244.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++|+++|+++|++|+++++...... +.+..... ..+++++.+|+.++. + .++|+||
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~---~~~~~~~~-~~~~~~i~~D~~~~~-----l--~~~D~Vi 188 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRK---ENVMHHFS-NPNFELIRHDVVEPI-----L--LEVDQIY 188 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccch---hhhhhhcc-CCceEEEECCccChh-----h--cCCCEEE
Confidence 78999999999999999999999999999986432211 11111111 246888999997763 3 4689999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC-----CCCCCChhHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET-----PQAPINPYGKAKK 225 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~-----~~~~~~~Y~~sK~ 225 (413)
|+|+...+.....++...+++|+.++.+++++|++.++ ++|++||+.+|+.....+.+|+. |..+.+.|+.+|.
T Consensus 189 HlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~SK~ 267 (442)
T PLN02206 189 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKR 267 (442)
T ss_pred EeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECChHHhCCCCCCCCCccccccCCCCCccchHHHHHH
Confidence 99997655444557788999999999999999999886 99999999999876555666653 4455788999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeee
Q 015080 226 MAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRD 305 (413)
Q Consensus 226 ~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 305 (413)
++|.++..+.++++++++++||+++|||+.... .+.+++.++..+..+.+ +.++| ++++.++
T Consensus 268 ~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~-----------~~~~v~~~i~~~l~~~~-i~i~g------~G~~~rd 329 (442)
T PLN02206 268 TAETLTMDYHRGANVEVRIARIFNTYGPRMCID-----------DGRVVSNFVAQALRKEP-LTVYG------DGKQTRS 329 (442)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccccCCCCCcc-----------ccchHHHHHHHHHcCCC-cEEeC------CCCEEEe
Confidence 999999999888899999999999999974211 11456666676666666 77777 8889999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCcc
Q 015080 306 YIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWT 385 (413)
Q Consensus 306 ~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 385 (413)
|+|++|+|++++.+++... .++||+++++.+|+.|+++.+.+.+|.+.++.+.+....+.....+|++|++++|||+
T Consensus 330 fi~V~Dva~ai~~a~e~~~---~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~~~~~~~~~~d~sKa~~~LGw~ 406 (442)
T PLN02206 330 FQFVSDLVEGLMRLMEGEH---VGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNTEDDPHKRKPDITKAKELLGWE 406 (442)
T ss_pred EEeHHHHHHHHHHHHhcCC---CceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCCCCCccccccCHHHHHHHcCCC
Confidence 9999999999999987543 2599999999999999999999999987777766655555566778999999999999
Q ss_pred cccccHHHHHHHHHHHHHhc
Q 015080 386 AKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 386 p~~~~~~e~l~~~~~~~~~~ 405 (413)
|++ +++|+|+++++||++.
T Consensus 407 P~~-~l~egl~~~~~~~~~~ 425 (442)
T PLN02206 407 PKV-SLRQGLPLMVKDFRQR 425 (442)
T ss_pred CCC-CHHHHHHHHHHHHHHh
Confidence 999 8999999999999765
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=316.88 Aligned_cols=309 Identities=26% Similarity=0.419 Sum_probs=266.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC--CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
++++||||.||||++.+..+... .++.+.++-..--.. .+.++.... ..+..++++|+.+...+..+++...+|.
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~--~~~l~~~~n-~p~ykfv~~di~~~~~~~~~~~~~~id~ 83 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSN--LKNLEPVRN-SPNYKFVEGDIADADLVLYLFETEEIDT 83 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccc--cchhhhhcc-CCCceEeeccccchHHHHhhhccCchhh
Confidence 78999999999999999999987 556777664332222 334443333 3688999999999999999998889999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccceecCCCCCCCCC-CCCCCCCCChhHHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-GVDTLIYSSTCATYGEPEKMPIT-EETPQAPINPYGKAKKM 226 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~iV~~SS~~~~~~~~~~~~~-e~~~~~~~~~Y~~sK~~ 226 (413)
|+|.|+..+...+..++......|+.++..|+++++.. +++++||+||..|||...+.... |.+.+.|.++|++||++
T Consensus 84 vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s~~nPtnpyAasKaA 163 (331)
T KOG0747|consen 84 VIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEASLLNPTNPYAASKAA 163 (331)
T ss_pred hhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccccccccccccCCCCCchHHHHHH
Confidence 99999998888888888899999999999999999998 68999999999999999776666 88999999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeec
Q 015080 227 AEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306 (413)
Q Consensus 227 ~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 306 (413)
+|.+++++..++|++++++|.++||||++.+. .+++.++..+..+.+ .++.| +|.+.++|
T Consensus 164 aE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~-------------klipkFi~l~~~~~~-~~i~g------~g~~~rs~ 223 (331)
T KOG0747|consen 164 AEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPE-------------KLIPKFIKLAMRGKE-YPIHG------DGLQTRSY 223 (331)
T ss_pred HHHHHHHHhhccCCcEEEEeccCccCCCcChH-------------HHhHHHHHHHHhCCC-cceec------Ccccceee
Confidence 99999999999999999999999999987543 788888887777777 88888 99999999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCce-------eEecCCCCCCccccccCHHHHH
Q 015080 307 IDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIK-------VIYEPRRPGDYAEVYSDPTKIR 379 (413)
Q Consensus 307 i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~-------~~~~~~~~~~~~~~~~d~~k~~ 379 (413)
+|++|+++|+..+++++..+ ++|||+++.+.+..|+++.|.+.+++..+ +.+++.++.......+|.+|++
T Consensus 224 l~veD~~ea~~~v~~Kg~~g--eIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~eKik 301 (331)
T KOG0747|consen 224 LYVEDVSEAFKAVLEKGELG--EIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDDEKIK 301 (331)
T ss_pred EeHHHHHHHHHHHHhcCCcc--ceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccHHHHH
Confidence 99999999999999986655 79999999999999999999999876433 2334444444456789999999
Q ss_pred HhcCcccccccHHHHHHHHHHHHHhcc
Q 015080 380 LELNWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 380 ~~lG~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
.|||+|++ +|++||+.+++||.++.
T Consensus 302 -~LGw~~~~-p~~eGLrktie~y~~~~ 326 (331)
T KOG0747|consen 302 -KLGWRPTT-PWEEGLRKTIEWYTKNF 326 (331)
T ss_pred -hcCCcccC-cHHHHHHHHHHHHHhhh
Confidence 99999999 79999999999998765
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=343.70 Aligned_cols=318 Identities=22% Similarity=0.299 Sum_probs=238.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhc--CCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELF--PEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
|+|||||||||||++|+++|+++ |++|++++|+..... .+.... ....+++++.+|++|.+.+.+++ .++|
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~----~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~--~~~d 88 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIK----HLLEPDTVPWSGRIQFHRINIKHDSRLEGLI--KMAD 88 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhh----hhhccccccCCCCeEEEEcCCCChHHHHHHh--hcCC
Confidence 78999999999999999999998 599999987533211 111110 01246899999999999999998 5799
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC-------------
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ------------- 214 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~------------- 214 (413)
+|||+|+...+.....++...+..|+.++.++++++++.+ +++||+||.++||.....+++|+.|.
T Consensus 89 ~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~~ 167 (386)
T PLN02427 89 LTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDE 167 (386)
T ss_pred EEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-CEEEEEeeeeeeCCCcCCCCCcccccccccccccccccc
Confidence 9999999765433444566677899999999999998877 79999999999986543333333221
Q ss_pred ---------CCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 215 ---------APINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 215 ---------~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
.|.+.|+.||.++|.++..+++++|++++++||++||||+.....+.. .+ ......+++.++..+..+.
T Consensus 168 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~-~~-~~~~~~~i~~~~~~~~~~~ 245 (386)
T PLN02427 168 SPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGID-GP-SEGVPRVLACFSNNLLRRE 245 (386)
T ss_pred cccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCcccccc-cc-ccccchHHHHHHHHHhcCC
Confidence 234579999999999999988888999999999999999753211100 00 0001145566666666666
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCC-CcccHHHHHHHHHHHcCCCc-------e
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTG-KGRSVKEFVEACKKATSANI-------K 357 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~-~~~s~~e~~~~i~~~~g~~~-------~ 357 (413)
+ +.+.| ++.+.++|+||+|+|++++.++++.....+++||++++ +.+++.|+++.+.+.+|... .
T Consensus 246 ~-~~~~g------~g~~~r~~i~V~Dva~ai~~al~~~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~ 318 (386)
T PLN02427 246 P-LKLVD------GGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEEP 318 (386)
T ss_pred C-eEEEC------CCCceECcEeHHHHHHHHHHHHhCcccccCceEEeCCCCCCccHHHHHHHHHHHhcccccccccccc
Confidence 6 67776 78888999999999999999998653223469999987 58999999999999998421 1
Q ss_pred eEecCCC------CCCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhc
Q 015080 358 VIYEPRR------PGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 358 ~~~~~~~------~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
....+.. ..+......|.+|++++|||+|++ +++++|+++++|++.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~p~~-~l~~gl~~~~~~~~~~ 371 (386)
T PLN02427 319 TVDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKT-SLWDLLESTLTYQHKT 371 (386)
T ss_pred ccccCcccccCccccchhhccCCHHHHHHhcCCCcCc-cHHHHHHHHHHHHHHH
Confidence 0111111 123345677999999999999999 9999999999999875
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=346.19 Aligned_cols=329 Identities=25% Similarity=0.265 Sum_probs=244.0
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCch-------h------hhhhhhhc-CCCCceEEEEccC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIG-------A------VKVLQELF-PEPGRLQFIYADL 131 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~-------~------~~~~~~~~-~~~~~~~~~~~Dl 131 (413)
.+++ |+||||||+||||++|+++|+++|++|+++++..++... . .+.+.... ....+++++.+|+
T Consensus 44 ~~~~-k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl 122 (442)
T PLN02572 44 SSKK-KKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDI 122 (442)
T ss_pred cccC-CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCC
Confidence 3445 899999999999999999999999999999865432211 0 01111100 0123688999999
Q ss_pred CCHHHHHHHhhcCCCcEEEEcCcccCccCCcCCh---HHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccceecCCCCCCC
Q 015080 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDP---LKYYHNITSNTLVVLESMARHGVD-TLIYSSTCATYGEPEKMP 207 (413)
Q Consensus 132 ~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~---~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS~~~~~~~~~~~ 207 (413)
+|.+.+.++++..++|+|||+|+.........++ ...+++|+.|+.++++++++.+++ ++|++||..+||... .+
T Consensus 123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~-~~ 201 (442)
T PLN02572 123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN-ID 201 (442)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC-CC
Confidence 9999999999766899999999865433333232 456789999999999999998875 999999999998643 12
Q ss_pred CCC-----------C---CCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCC---Ccc-ccc
Q 015080 208 ITE-----------E---TPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAP---RPE-LRE 269 (413)
Q Consensus 208 ~~e-----------~---~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~---~~~-~~~ 269 (413)
++| + .+..|.++|+.||.++|.+++.+++++|++++++||++||||+......... .-. ...
T Consensus 202 ~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~ 281 (442)
T PLN02572 202 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDGV 281 (442)
T ss_pred CcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcccc
Confidence 222 2 2556788999999999999999998899999999999999998542100000 000 000
Q ss_pred ccchHHHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcccHHHHHHHH
Q 015080 270 HGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSVKEFVEAC 348 (413)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~~e~~~~i 348 (413)
.+.+++.++..+..+++ +.++| ++++.++|+||+|+|++++.++++.. .+...+||+++ +.+|+.|+++.+
T Consensus 282 ~~~~i~~~~~~~~~g~~-i~v~g------~G~~~Rdfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs-~~~si~el~~~i 353 (442)
T PLN02572 282 FGTALNRFCVQAAVGHP-LTVYG------KGGQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFT-EQFSVNELAKLV 353 (442)
T ss_pred hhhHHHHHHHHHhcCCC-ceecC------CCCEEECeEEHHHHHHHHHHHHhChhhcCceeEEEeCC-CceeHHHHHHHH
Confidence 12455666666666666 77777 89999999999999999999998542 22225899976 689999999999
Q ss_pred HHH---cCCCceeEecCCC--CCCccccccCHHHHHHhcCccccc--ccHHHHHHHHHHHHHhc
Q 015080 349 KKA---TSANIKVIYEPRR--PGDYAEVYSDPTKIRLELNWTAKY--TNLQESLEIAWRWQKSH 405 (413)
Q Consensus 349 ~~~---~g~~~~~~~~~~~--~~~~~~~~~d~~k~~~~lG~~p~~--~~~~e~l~~~~~~~~~~ 405 (413)
.+. +|.+.++...+.. .........|++|++ +|||+|++ .++.++|.+++.||+.+
T Consensus 354 ~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~-~LGw~p~~~~~~l~~~l~~~~~~~~~~ 416 (442)
T PLN02572 354 TKAGEKLGLDVEVISVPNPRVEAEEHYYNAKHTKLC-ELGLEPHLLSDSLLDSLLNFAVKYKDR 416 (442)
T ss_pred HHHHHhhCCCCCeeeCCCCcccccccccCccHHHHH-HcCCCCCCcHHHHHHHHHHHHHHHHhh
Confidence 999 8987776665533 222335567999997 59999975 25889999999999855
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=338.39 Aligned_cols=311 Identities=24% Similarity=0.343 Sum_probs=244.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCE-EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
|+||||||+||||++|+++|+++|++ |+++++...... ...+..+.. +..+.++.+|++|.+++.+++++.++|+|
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGN--LESLADVSD-SERYVFEHADICDRAELDRIFAQHQPDAV 77 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccch--HHHHHhccc-CCceEEEEecCCCHHHHHHHHHhcCCCEE
Confidence 47999999999999999999999976 555554321111 111112111 24578899999999999999976679999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc---------CCCEEEEeccceecCCCC----------CCCCCC
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH---------GVDTLIYSSTCATYGEPE----------KMPITE 210 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---------~~~~iV~~SS~~~~~~~~----------~~~~~e 210 (413)
||+||..........++..+++|+.++.+++++|++. +++++|++||.++|+... ..+++|
T Consensus 78 ih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E 157 (352)
T PRK10084 78 MHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTE 157 (352)
T ss_pred EECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccc
Confidence 9999976543344567789999999999999999874 456999999999998632 123678
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
+.+..|.+.|+.||.++|.+++.+++++|++++++||+.||||+.... .+++.++..+..+.+ +++
T Consensus 158 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~-------------~~~~~~~~~~~~~~~-~~~ 223 (352)
T PRK10084 158 TTAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPE-------------KLIPLVILNALEGKP-LPI 223 (352)
T ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCcc-------------chHHHHHHHHhcCCC-eEE
Confidence 888889999999999999999999888999999999999999974211 456666666665555 677
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCcee--------EecC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKV--------IYEP 362 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~--------~~~~ 362 (413)
++ ++++.++|+|++|+|++++.+++.... +++||+++++..++.++++.+++.+|...+. ...+
T Consensus 224 ~~------~g~~~~~~v~v~D~a~a~~~~l~~~~~--~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~ 295 (352)
T PRK10084 224 YG------KGDQIRDWLYVEDHARALYKVVTEGKA--GETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVA 295 (352)
T ss_pred eC------CCCeEEeeEEHHHHHHHHHHHHhcCCC--CceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhccccc
Confidence 77 788999999999999999999886443 3799999999999999999999999864321 1111
Q ss_pred CCCCCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccC
Q 015080 363 RRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 363 ~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 407 (413)
..+.......+|++|++++|||+|++ +++++|+++++|++++.+
T Consensus 296 ~~~~~~~~~~~d~~k~~~~lg~~p~~-~l~~~l~~~~~~~~~~~~ 339 (352)
T PRK10084 296 DRPGHDRRYAIDASKISRELGWKPQE-TFESGIRKTVEWYLANTE 339 (352)
T ss_pred cCCCCCceeeeCHHHHHHHcCCCCcC-CHHHHHHHHHHHHHhCHH
Confidence 22223344568999999999999998 999999999999998755
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=328.84 Aligned_cols=326 Identities=48% Similarity=0.798 Sum_probs=260.3
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEEE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMH 151 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi~ 151 (413)
+||||||||+||++++++|+++|++|+++++..+........+. .. .+++++.+|+++.+++.++++..++|+|||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~ 76 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGE---RI-TRVTFVEGDLRDRELLDRLFEEHKIDAVIH 76 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhc---cc-cceEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 48999999999999999999999999988764433222111111 11 257889999999999999997668999999
Q ss_pred cCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 015080 152 FAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDII 231 (413)
Q Consensus 152 ~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~ 231 (413)
|||..........+...++.|+.++.++++++.+.+++++|++||.++|+.....+++|+.+..|.+.|+.+|.++|.++
T Consensus 77 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~~~~~~~~~y~~sK~~~e~~~ 156 (328)
T TIGR01179 77 FAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISEDSPLGPINPYGRSKLMSERIL 156 (328)
T ss_pred CccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCCCccccCCCCCCCchHHHHHHHHHHH
Confidence 99976544444566778899999999999999998888999999999998766667889988888999999999999999
Q ss_pred HHHHhh-CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHH
Q 015080 232 LDFSKN-SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310 (413)
Q Consensus 232 ~~~~~~-~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~ 310 (413)
+.++.+ .+++++++||+.+|||...+..++...+. ..+++.+.....+....+.++|..+..+++...++|||++
T Consensus 157 ~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~ 232 (328)
T TIGR01179 157 RDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGI----THLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVM 232 (328)
T ss_pred HHHHHhccCCCEEEEecCcccCCCCCCccccCCccc----chHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHH
Confidence 999877 79999999999999997654433322111 1456666655543333366666555556778889999999
Q ss_pred HHHHHHHHHHHhcC-CCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCcccccc
Q 015080 311 DLVDAHVKALERAQ-PKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYT 389 (413)
Q Consensus 311 Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~ 389 (413)
|+++++..++.... ...+++||+++++++|+.|+++.+.+.+|.+.++...+...........|+++++++|||+|+++
T Consensus 233 D~a~~~~~~~~~~~~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~ 312 (328)
T TIGR01179 233 DLADAHLAALEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPRRPGDPASLVADASKIRRELGWQPKYT 312 (328)
T ss_pred HHHHHHHHHHhhhhcCCCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCCCCccccchhcchHHHHHHhCCCCCcc
Confidence 99999999997532 12347999999999999999999999999988877666555445556679999999999999994
Q ss_pred cHHHHHHHHHHHHHhc
Q 015080 390 NLQESLEIAWRWQKSH 405 (413)
Q Consensus 390 ~~~e~l~~~~~~~~~~ 405 (413)
+++++|+++++|+++|
T Consensus 313 ~l~~~~~~~~~~~~~~ 328 (328)
T TIGR01179 313 DLEIIIKTAWRWESRN 328 (328)
T ss_pred hHHHHHHHHHHHHhcC
Confidence 4999999999999876
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=330.61 Aligned_cols=307 Identities=22% Similarity=0.297 Sum_probs=242.4
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
.+ |+|||||||||||+++++.|.++|++|++++|...... .. ....+.++.+|++|.+.+..++ .++|
T Consensus 20 ~~-~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~------~~---~~~~~~~~~~Dl~d~~~~~~~~--~~~D 87 (370)
T PLN02695 20 EK-LRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHM------SE---DMFCHEFHLVDLRVMENCLKVT--KGVD 87 (370)
T ss_pred CC-CEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccc------cc---ccccceEEECCCCCHHHHHHHH--hCCC
Confidence 45 89999999999999999999999999999987532110 00 0123577889999999988888 5799
Q ss_pred EEEEcCcccCcc-CCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCC----CCCCCCC--CCCCCChh
Q 015080 148 AVMHFAAVAYVG-ESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEK----MPITEET--PQAPINPY 220 (413)
Q Consensus 148 vvi~~Ag~~~~~-~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~----~~~~e~~--~~~~~~~Y 220 (413)
+|||+|+..... ....++...+..|+.++.++++++++.++++|||+||.++|+.... .++.|++ +..|.+.|
T Consensus 88 ~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Y 167 (370)
T PLN02695 88 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAY 167 (370)
T ss_pred EEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCHH
Confidence 999999865321 1223455667899999999999999999999999999999986532 1356654 66788999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCC
Q 015080 221 GKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300 (413)
Q Consensus 221 ~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 300 (413)
+.+|.++|.+++.+..++|++++++||+.+|||+.....+ ...+.+.++..+......+.+++ ++
T Consensus 168 g~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~---------~~~~~~~~~~~~~~~~~~i~~~g------~g 232 (370)
T PLN02695 168 GLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGG---------REKAPAAFCRKALTSTDEFEMWG------DG 232 (370)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCcccc---------ccccHHHHHHHHHcCCCCeEEeC------CC
Confidence 9999999999999988889999999999999997432110 01234455555444323377777 89
Q ss_pred ceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHH
Q 015080 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRL 380 (413)
Q Consensus 301 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 380 (413)
.+.++|+|++|++++++.+++... +++||+++++.+|+.|+++.+.+.+|.+.++...+.... ......|++|+++
T Consensus 233 ~~~r~~i~v~D~a~ai~~~~~~~~---~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~-~~~~~~d~sk~~~ 308 (370)
T PLN02695 233 KQTRSFTFIDECVEGVLRLTKSDF---REPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGPEG-VRGRNSDNTLIKE 308 (370)
T ss_pred CeEEeEEeHHHHHHHHHHHHhccC---CCceEecCCCceeHHHHHHHHHHHhCCCCCceecCCCCC-ccccccCHHHHHH
Confidence 999999999999999999887643 269999999999999999999999998777666554322 2345689999999
Q ss_pred hcCcccccccHHHHHHHHHHHHHhcc
Q 015080 381 ELNWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 381 ~lG~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
+|||+|++ +++++|+++++|++++.
T Consensus 309 ~lgw~p~~-~l~e~i~~~~~~~~~~~ 333 (370)
T PLN02695 309 KLGWAPTM-RLKDGLRITYFWIKEQI 333 (370)
T ss_pred hcCCCCCC-CHHHHHHHHHHHHHHHH
Confidence 99999998 99999999999998864
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=325.22 Aligned_cols=311 Identities=30% Similarity=0.442 Sum_probs=249.0
Q ss_pred EEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
+||||||||+||++++++|++.| ++|++++|...... .+.+..+.. ..+++++.+|++|++++.++++..++|+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 77 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGN--LENLADLED-NPRYRFVKGDIGDRELVSRLFTEHQPDAV 77 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchh--hhhhhhhcc-CCCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence 48999999999999999999987 78988876322111 111222211 24688999999999999999965569999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccceecCCCCCC-CCCCCCCCCCCChhHHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSSTCATYGEPEKM-PITEETPQAPINPYGKAKKMA 227 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS~~~~~~~~~~-~~~e~~~~~~~~~Y~~sK~~~ 227 (413)
||+|+..........++..+++|+.++.++++++.+.+.+ ++|++||.++||..... +++|+.+..|.+.|+.+|..+
T Consensus 78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~ 157 (317)
T TIGR01181 78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPLAPSSPYSASKAAS 157 (317)
T ss_pred EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCCCCCCCCchHHHHHHH
Confidence 9999976554445567788999999999999999987433 89999999999876433 688888888889999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecc
Q 015080 228 EDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307 (413)
Q Consensus 228 e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i 307 (413)
|.+++.++.+.+++++++||+.+|||..... .+++.++..+..+.+ +++.+ ++++.++|+
T Consensus 158 e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~------~g~~~~~~i 217 (317)
T TIGR01181 158 DHLVRAYHRTYGLPALITRCSNNYGPYQFPE-------------KLIPLMITNALAGKP-LPVYG------DGQQVRDWL 217 (317)
T ss_pred HHHHHHHHHHhCCCeEEEEeccccCCCCCcc-------------cHHHHHHHHHhcCCC-ceEeC------CCceEEeeE
Confidence 9999999888999999999999999864211 566777777776665 66666 788899999
Q ss_pred cHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeE-ecCCCCCCccccccCHHHHHHhcCccc
Q 015080 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVI-YEPRRPGDYAEVYSDPTKIRLELNWTA 386 (413)
Q Consensus 308 ~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~-~~~~~~~~~~~~~~d~~k~~~~lG~~p 386 (413)
|++|+|+++..++++... +++||+++++++++.|+++.+.+.+|.+.... ..+..........+|++|++++|||+|
T Consensus 218 ~v~D~a~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~lG~~p 295 (317)
T TIGR01181 218 YVEDHCRAIYLVLEKGRV--GETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRYAIDASKIKRELGWAP 295 (317)
T ss_pred EHHHHHHHHHHHHcCCCC--CceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCCccchhhhcCCHHHHHHHhCCCC
Confidence 999999999999986543 37999999999999999999999999754432 222222233344689999999999999
Q ss_pred ccccHHHHHHHHHHHHHhccCC
Q 015080 387 KYTNLQESLEIAWRWQKSHRGG 408 (413)
Q Consensus 387 ~~~~~~e~l~~~~~~~~~~~~~ 408 (413)
++ +++++|+++++||+++..+
T Consensus 296 ~~-~~~~~i~~~~~~~~~~~~~ 316 (317)
T TIGR01181 296 KY-TFEEGLRKTVQWYLDNEWW 316 (317)
T ss_pred CC-cHHHHHHHHHHHHHhccCC
Confidence 98 8999999999999887653
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=356.61 Aligned_cols=313 Identities=26% Similarity=0.428 Sum_probs=252.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC--CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|||||||||||++|+++|+++ |++|+++++.... .... .+..... ..+++++.+|++|.+.+.+++...++|+
T Consensus 7 ~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~-~~~~-~l~~~~~-~~~v~~~~~Dl~d~~~~~~~~~~~~~D~ 83 (668)
T PLN02260 7 KNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYC-SNLK-NLNPSKS-SPNFKFVKGDIASADLVNYLLITEGIDT 83 (668)
T ss_pred CEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCcc-chhh-hhhhccc-CCCeEEEECCCCChHHHHHHHhhcCCCE
Confidence 89999999999999999999998 6899988864211 1111 1111111 2478999999999999888776578999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccceecCCCCCCC---CCCCCCCCCCChhHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VDTLIYSSTCATYGEPEKMP---ITEETPQAPINPYGKAK 224 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~iV~~SS~~~~~~~~~~~---~~e~~~~~~~~~Y~~sK 224 (413)
|||+|+.........++...+++|+.++.++++++++.+ ++++||+||..+||.....+ ..|+.+..|.++|+.||
T Consensus 84 ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~~p~~~Y~~sK 163 (668)
T PLN02260 84 IMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSATK 163 (668)
T ss_pred EEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCCCCCCCcHHHH
Confidence 999999876544445667788999999999999999986 88999999999998765432 35677777889999999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceee
Q 015080 225 KMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304 (413)
Q Consensus 225 ~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 304 (413)
.++|.+++.+.++++++++++||+.||||+.... .+++.++..+..+.+ +++.| ++.+.+
T Consensus 164 ~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~-------------~~i~~~~~~a~~g~~-i~i~g------~g~~~r 223 (668)
T PLN02260 164 AGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPE-------------KLIPKFILLAMQGKP-LPIHG------DGSNVR 223 (668)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcccccCcCCCcc-------------cHHHHHHHHHhCCCC-eEEec------CCCceE
Confidence 9999999999888899999999999999974321 566777777776665 77777 888999
Q ss_pred ecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCce--eEecCCCCCCccccccCHHHHHHhc
Q 015080 305 DYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIK--VIYEPRRPGDYAEVYSDPTKIRLEL 382 (413)
Q Consensus 305 ~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~--~~~~~~~~~~~~~~~~d~~k~~~~l 382 (413)
+|+|++|+|++++.+++....+ ++||+++++.+++.|+++.+.+.+|.+.+ +...+..+.......+|++|++ +|
T Consensus 224 ~~ihV~Dva~a~~~~l~~~~~~--~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~~~p~~~~~~~~d~~k~~-~l 300 (668)
T PLN02260 224 SYLYCEDVAEAFEVVLHKGEVG--HVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQKLK-KL 300 (668)
T ss_pred eeEEHHHHHHHHHHHHhcCCCC--CEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecCCCCCCcceeecCHHHHH-Hc
Confidence 9999999999999998765443 69999999999999999999999997643 3333333334445678999997 69
Q ss_pred CcccccccHHHHHHHHHHHHHhccCCCc
Q 015080 383 NWTAKYTNLQESLEIAWRWQKSHRGGYA 410 (413)
Q Consensus 383 G~~p~~~~~~e~l~~~~~~~~~~~~~~~ 410 (413)
||+|++ +++|+|+++++||+++.+.+.
T Consensus 301 Gw~p~~-~~~egl~~~i~w~~~~~~~~~ 327 (668)
T PLN02260 301 GWQERT-SWEEGLKKTMEWYTSNPDWWG 327 (668)
T ss_pred CCCCCC-CHHHHHHHHHHHHHhChhhhh
Confidence 999998 999999999999999877543
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=355.23 Aligned_cols=315 Identities=20% Similarity=0.262 Sum_probs=245.9
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHH-HHHHhhcCCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKA-VNKFFSENAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~-~~~~~~~~~~d 147 (413)
+|+|||||||||||++|+++|+++ |++|++++|...... .. .. ..+++++.+|++|..+ +++++ .++|
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~---~~----~~-~~~~~~~~gDl~d~~~~l~~~l--~~~D 384 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAIS---RF----LG-HPRFHFVEGDISIHSEWIEYHI--KKCD 384 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhh---hh----cC-CCceEEEeccccCcHHHHHHHh--cCCC
Confidence 489999999999999999999986 799999987543211 11 11 1468999999998665 56677 5799
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC-------CCCChh
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ-------APINPY 220 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~-------~~~~~Y 220 (413)
+|||+||...+.....++...+++|+.++.++++++++.+ +++||+||.++||.....+++|+.+. .|.+.|
T Consensus 385 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Y 463 (660)
T PRK08125 385 VVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIY 463 (660)
T ss_pred EEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcchhhcCCCCCCCcCccccccccCCCCCCccch
Confidence 9999999876555556778889999999999999999987 79999999999997655567787643 245689
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCC
Q 015080 221 GKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300 (413)
Q Consensus 221 ~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 300 (413)
+.||.++|.+++.+++++|++++++||+++|||+........ ...+.+++.++..+..+.+ +.+.| ++
T Consensus 464 g~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~-----~~~~~~i~~~i~~~~~~~~-i~~~g------~g 531 (660)
T PRK08125 464 SVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAAR-----IGSSRAITQLILNLVEGSP-IKLVD------GG 531 (660)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCcccccccc-----ccccchHHHHHHHhcCCCC-eEEeC------CC
Confidence 999999999999998888999999999999999753210000 0011566777777776666 66766 78
Q ss_pred ceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC-cccHHHHHHHHHHHcCCCceeEecCCC--------------
Q 015080 301 TCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK-GRSVKEFVEACKKATSANIKVIYEPRR-------------- 364 (413)
Q Consensus 301 ~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~-~~s~~e~~~~i~~~~g~~~~~~~~~~~-------------- 364 (413)
++.++|+|++|+|++++.++++.. ...+++||+++++ .+|+.|+++.+.+.+|.+......+..
T Consensus 532 ~~~rd~i~v~Dva~a~~~~l~~~~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (660)
T PRK08125 532 KQKRCFTDIRDGIEALFRIIENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSYYGK 611 (660)
T ss_pred ceeeceeeHHHHHHHHHHHHhccccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCcccccccccccccccc
Confidence 999999999999999999998643 1234799999886 799999999999999854221111110
Q ss_pred -CCCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccCC
Q 015080 365 -PGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGG 408 (413)
Q Consensus 365 -~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~ 408 (413)
..+......|++|++++|||+|++ +++|+|+++++|++++.+-
T Consensus 612 ~~~~~~~~~~d~~ka~~~LGw~P~~-~lee~l~~~i~~~~~~~~~ 655 (660)
T PRK08125 612 GYQDVEHRKPSIRNARRLLDWEPKI-DMQETIDETLDFFLRTVDL 655 (660)
T ss_pred ccccccccCCChHHHHHHhCCCCCC-cHHHHHHHHHHHHHhcccc
Confidence 012234467999999999999998 9999999999999987654
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=302.11 Aligned_cols=304 Identities=26% Similarity=0.405 Sum_probs=265.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
.++ ++|+||||.||||+||++.|..+|++|+++|...... .+.+...... ..++.+.-|+..+ ++ ..+
T Consensus 25 ~~~-lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~---k~n~~~~~~~-~~fel~~hdv~~p-----l~--~ev 92 (350)
T KOG1429|consen 25 SQN-LRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGR---KENLEHWIGH-PNFELIRHDVVEP-----LL--KEV 92 (350)
T ss_pred CCC-cEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccc---hhhcchhccC-cceeEEEeechhH-----HH--HHh
Confidence 335 8999999999999999999999999999998644332 2233333333 6788888888776 44 467
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC-----CCCCCChhH
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET-----PQAPINPYG 221 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~-----~~~~~~~Y~ 221 (413)
|.|||+|++..+.....++.....+|+.++.+++-.|++.+ +|+++.||+.|||.+...|..|+. |..|...|.
T Consensus 93 D~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~-aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cyd 171 (350)
T KOG1429|consen 93 DQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYD 171 (350)
T ss_pred hhhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhC-ceEEEeecccccCCcccCCCccccccccCcCCchhhhh
Confidence 99999999998887788888999999999999999999887 699999999999998777776664 566788999
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCc
Q 015080 222 KAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGT 301 (413)
Q Consensus 222 ~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 301 (413)
..|..+|.++..+.++.|+.+.|.|+.+.|||...-+ .++.+..++..+....+ +.++| +|.
T Consensus 172 egKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~-----------dgrvvsnf~~q~lr~ep-ltv~g------~G~ 233 (350)
T KOG1429|consen 172 EGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMD-----------DGRVVSNFIAQALRGEP-LTVYG------DGK 233 (350)
T ss_pred HHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccC-----------CChhhHHHHHHHhcCCC-eEEEc------CCc
Confidence 9999999999999999999999999999999975322 13888889999998888 99999 999
Q ss_pred eeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHh
Q 015080 302 CVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLE 381 (413)
Q Consensus 302 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 381 (413)
+.|+|.||+|++++++.+++++... -+||++++.+|+.|+++++.+..+....+.+.+..+.++.....|++++++.
T Consensus 234 qtRSF~yvsD~Vegll~Lm~s~~~~---pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~~~Ddp~kR~pDit~ake~ 310 (350)
T KOG1429|consen 234 QTRSFQYVSDLVEGLLRLMESDYRG---PVNIGNPGEFTMLELAEMVKELIGPVSEIEFVENGPDDPRKRKPDITKAKEQ 310 (350)
T ss_pred ceEEEEeHHHHHHHHHHHhcCCCcC---CcccCCccceeHHHHHHHHHHHcCCCcceeecCCCCCCccccCccHHHHHHH
Confidence 9999999999999999999987765 6999999999999999999999988888888888888888889999999999
Q ss_pred cCcccccccHHHHHHHHHHHHHhc
Q 015080 382 LNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 382 lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
|||.|+. +|+|+|..++.|+++.
T Consensus 311 LgW~Pkv-~L~egL~~t~~~fr~~ 333 (350)
T KOG1429|consen 311 LGWEPKV-SLREGLPLTVTYFRER 333 (350)
T ss_pred hCCCCCC-cHHHhhHHHHHHHHHH
Confidence 9999999 9999999999999875
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=320.42 Aligned_cols=304 Identities=22% Similarity=0.205 Sum_probs=227.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+||||++++++|+++|++|++++|............ .......++.++.+|++|.+++.+++ .++|+||
T Consensus 6 k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~d~~~~~~~~--~~~d~vi 82 (325)
T PLN02989 6 KVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLL-ALDGAKERLKLFKADLLDEGSFELAI--DGCETVF 82 (325)
T ss_pred CEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHH-hccCCCCceEEEeCCCCCchHHHHHH--cCCCEEE
Confidence 89999999999999999999999999998877654332221111 11111246889999999999999999 5799999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccceecCCC-----CCCCCCCCCCCCC------CC
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-GVDTLIYSSTCATYGEP-----EKMPITEETPQAP------IN 218 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~iV~~SS~~~~~~~-----~~~~~~e~~~~~~------~~ 218 (413)
||||........+.+...+++|+.++.++++++.+. +.++||++||.++|+.. ...+++|+.+..| .+
T Consensus 83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~ 162 (325)
T PLN02989 83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQ 162 (325)
T ss_pred EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccccc
Confidence 999975433334456678999999999999999885 56899999998877543 2335778876654 36
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCC
Q 015080 219 PYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTA 298 (413)
Q Consensus 219 ~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 298 (413)
+|+.||.++|.++..+.+++|++++++||+++|||+..+.. .+...++..+..+...+
T Consensus 163 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~------------~~~~~~i~~~~~~~~~~---------- 220 (325)
T PLN02989 163 WYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTL------------NFSVAVIVELMKGKNPF---------- 220 (325)
T ss_pred chHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCC------------CchHHHHHHHHcCCCCC----------
Confidence 89999999999999998888999999999999999754210 22333333333333211
Q ss_pred CCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCC--CCCCccccccCHH
Q 015080 299 DGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR--RPGDYAEVYSDPT 376 (413)
Q Consensus 299 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~--~~~~~~~~~~d~~ 376 (413)
+.+.++|+|++|+|++++.+++.+... ++||++ ++.+|+.|+++.+.+.++.. .+...+. ..........|++
T Consensus 221 -~~~~r~~i~v~Dva~a~~~~l~~~~~~--~~~ni~-~~~~s~~ei~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 295 (325)
T PLN02989 221 -NTTHHRFVDVRDVALAHVKALETPSAN--GRYIID-GPVVTIKDIENVLREFFPDL-CIADRNEDITELNSVTFNVCLD 295 (325)
T ss_pred -CCcCcCeeEHHHHHHHHHHHhcCcccC--ceEEEe-cCCCCHHHHHHHHHHHCCCC-CCCCCCCCcccccccCcCCCHH
Confidence 123578999999999999999875542 589995 56899999999999999732 1111111 1111224577899
Q ss_pred HHHHhcCcccccccHHHHHHHHHHHHHhcc
Q 015080 377 KIRLELNWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 377 k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
|+++ |||.|++ +++|+|+++++|+++..
T Consensus 296 k~~~-lg~~p~~-~l~~gi~~~~~~~~~~~ 323 (325)
T PLN02989 296 KVKS-LGIIEFT-PTETSLRDTVLSLKEKC 323 (325)
T ss_pred HHHH-cCCCCCC-CHHHHHHHHHHHHHHhC
Confidence 9884 9999998 89999999999998653
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=319.96 Aligned_cols=298 Identities=22% Similarity=0.244 Sum_probs=226.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+||||++++++|+++|++|++++|....... ..+..+.....++.++.+|++|.+++.+++ .++|+||
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~Vi 86 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKN--THLRELEGGKERLILCKADLQDYEALKAAI--DGCDGVF 86 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhH--HHHHHhhCCCCcEEEEecCcCChHHHHHHH--hcCCEEE
Confidence 899999999999999999999999999999875433211 111222111236889999999999999999 5799999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc-eecCCCCC---CCCCCCC------CCCCCChh
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTC-ATYGEPEK---MPITEET------PQAPINPY 220 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~-~~~~~~~~---~~~~e~~------~~~~~~~Y 220 (413)
|+|+.. ..++...+++|+.++.++++++++.++++||++||. ++||.... .+++|+. +..|.++|
T Consensus 87 h~A~~~-----~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y 161 (342)
T PLN02214 87 HTASPV-----TDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWY 161 (342)
T ss_pred EecCCC-----CCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHH
Confidence 999964 235778899999999999999999998999999996 58875432 2467764 33467789
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCC
Q 015080 221 GKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300 (413)
Q Consensus 221 ~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 300 (413)
+.||.++|.+++.+.+++|++++++||+.||||+..+.. ...+..++..+.+... . .+
T Consensus 162 ~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~-----------~~~~~~~~~~~~g~~~---~--------~~ 219 (342)
T PLN02214 162 CYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTI-----------NASLYHVLKYLTGSAK---T--------YA 219 (342)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCC-----------CchHHHHHHHHcCCcc---c--------CC
Confidence 999999999999998889999999999999999753210 0222233333332211 1 12
Q ss_pred ceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCC-CceeEecCCCCCCccccccCHHHHH
Q 015080 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSA-NIKVIYEPRRPGDYAEVYSDPTKIR 379 (413)
Q Consensus 301 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~d~~k~~ 379 (413)
++.++||||+|+|++++.+++++..+ +.||+++ ...++.|+++.+.+.++. +.+....+..........+|++|++
T Consensus 220 ~~~~~~i~V~Dva~a~~~al~~~~~~--g~yn~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~ 296 (342)
T PLN02214 220 NLTQAYVDVRDVALAHVLVYEAPSAS--GRYLLAE-SARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIK 296 (342)
T ss_pred CCCcCeeEHHHHHHHHHHHHhCcccC--CcEEEec-CCCCHHHHHHHHHHHCCCCCCCCCCccccCCCCCccccCcHHHH
Confidence 35689999999999999999875443 5899976 578999999999999863 3232222222223334568999998
Q ss_pred HhcCcccccccHHHHHHHHHHHHHhc
Q 015080 380 LELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 380 ~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
+|||+| + +++|+|+++++|+++.
T Consensus 297 -~LG~~p-~-~lee~i~~~~~~~~~~ 319 (342)
T PLN02214 297 -DLGLEF-T-STKQSLYDTVKSLQEK 319 (342)
T ss_pred -HcCCcc-c-CHHHHHHHHHHHHHHc
Confidence 699999 4 8999999999999875
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=317.16 Aligned_cols=291 Identities=22% Similarity=0.335 Sum_probs=233.2
Q ss_pred EEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEEEcC
Q 015080 74 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMHFA 153 (413)
Q Consensus 74 lITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi~~A 153 (413)
||||||||||++|++.|++.|++|+++.+. ..+|++|.+++.++++..++|+|||+|
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~-----------------------~~~Dl~~~~~l~~~~~~~~~d~Vih~A 57 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH-----------------------KELDLTRQADVEAFFAKEKPTYVILAA 57 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecc-----------------------ccCCCCCHHHHHHHHhccCCCEEEEee
Confidence 699999999999999999999988765321 138999999999999877899999999
Q ss_pred cccCc-cCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC----CCCCCC-hhHHHHHHH
Q 015080 154 AVAYV-GESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET----PQAPIN-PYGKAKKMA 227 (413)
Q Consensus 154 g~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~----~~~~~~-~Y~~sK~~~ 227 (413)
+.... ......+...++.|+.++.++++++++.+++++|++||+.+|+.....+++|+. +..|.+ .|+.||.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~ 137 (306)
T PLN02725 58 AKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAG 137 (306)
T ss_pred eeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhccCCCCCCcchHHHHHHHH
Confidence 97542 223346677899999999999999999999999999999999977667888876 444544 599999999
Q ss_pred HHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHH----HHHhccccceeE-ecccccCCCCce
Q 015080 228 EDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACF----DAARGIIAGLKV-KGTDYSTADGTC 302 (413)
Q Consensus 228 e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~-~g~~~~~~~~~~ 302 (413)
|.+++.+.++.+++++++||+.||||+.... +. .+.+++.++ .....+.+ +.+ ++ ++++
T Consensus 138 e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~-~~--------~~~~~~~~i~~~~~~~~~~~~-~~~~~~------~g~~ 201 (306)
T PLN02725 138 IKMCQAYRIQYGWDAISGMPTNLYGPHDNFH-PE--------NSHVIPALIRRFHEAKANGAP-EVVVWG------SGSP 201 (306)
T ss_pred HHHHHHHHHHhCCCEEEEEecceeCCCCCCC-CC--------CCcccHHHHHHHHHHhhcCCC-eEEEcC------CCCe
Confidence 9999998888899999999999999974210 00 013334333 33344444 333 55 7889
Q ss_pred eeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhc
Q 015080 303 VRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLEL 382 (413)
Q Consensus 303 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 382 (413)
.++|+|++|+|++++.+++..... +.||+++++++++.|+++.+.+.+|.+.++...+..........+|++|++ .|
T Consensus 202 ~~~~i~v~Dv~~~~~~~~~~~~~~--~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~l 278 (306)
T PLN02725 202 LREFLHVDDLADAVVFLMRRYSGA--EHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTSKPDGTPRKLMDSSKLR-SL 278 (306)
T ss_pred eeccccHHHHHHHHHHHHhccccC--cceEeCCCCcccHHHHHHHHHHHhCCCCceeecCCCCCcccccccCHHHHH-Hh
Confidence 999999999999999999865432 589999999999999999999999987766554443333445678999997 69
Q ss_pred CcccccccHHHHHHHHHHHHHhccC
Q 015080 383 NWTAKYTNLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 383 G~~p~~~~~~e~l~~~~~~~~~~~~ 407 (413)
||+|++ +++++|+++++|++++..
T Consensus 279 g~~p~~-~~~~~l~~~~~~~~~~~~ 302 (306)
T PLN02725 279 GWDPKF-SLKDGLQETYKWYLENYE 302 (306)
T ss_pred CCCCCC-CHHHHHHHHHHHHHhhhh
Confidence 999998 999999999999998854
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=314.54 Aligned_cols=280 Identities=15% Similarity=0.160 Sum_probs=227.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+||||++++++|+++| +|++++|... .+.+|++|.+.+.++++..++|+||
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~--------------------~~~~Dl~d~~~~~~~~~~~~~D~Vi 59 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST--------------------DYCGDFSNPEGVAETVRKIRPDVIV 59 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc--------------------cccCCCCCHHHHHHHHHhcCCCEEE
Confidence 479999999999999999999999 7888875321 2358999999999999766899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
|+|+......+..+++..+.+|+.++.++++++++.+. ++||+||..||+.....+++|+++..|.++|+.||+++|.+
T Consensus 60 h~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~-~~v~~Ss~~Vy~~~~~~p~~E~~~~~P~~~Yg~sK~~~E~~ 138 (299)
T PRK09987 60 NAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGA-WVVHYSTDYVFPGTGDIPWQETDATAPLNVYGETKLAGEKA 138 (299)
T ss_pred ECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEccceEECCCCCCCcCCCCCCCCCCHHHHHHHHHHHH
Confidence 99998776666677888899999999999999999885 89999999999887767899999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCC--Cceeeeccc
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTAD--GTCVRDYID 308 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~--~~~~~~~i~ 308 (413)
++.+. .+.+++||+++|||+.. .+++.++..+..+.+ +.+.+ + +.+.+++.+
T Consensus 139 ~~~~~----~~~~ilR~~~vyGp~~~---------------~~~~~~~~~~~~~~~-~~v~~------d~~g~~~~~~~~ 192 (299)
T PRK09987 139 LQEHC----AKHLIFRTSWVYAGKGN---------------NFAKTMLRLAKEREE-LSVIN------DQFGAPTGAELL 192 (299)
T ss_pred HHHhC----CCEEEEecceecCCCCC---------------CHHHHHHHHHhcCCC-eEEeC------CCcCCCCCHHHH
Confidence 98754 35799999999998632 566777777776665 77776 4 444456667
Q ss_pred HHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHc---CCCc---eeEecC-----CCCCCccccccCHHH
Q 015080 309 VNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKAT---SANI---KVIYEP-----RRPGDYAEVYSDPTK 377 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~---g~~~---~~~~~~-----~~~~~~~~~~~d~~k 377 (413)
++|+++++..++...... ++||+++++.+|+.|+++.|.+.+ |.+. .+...+ .....+....+|++|
T Consensus 193 ~d~~~~~~~~~~~~~~~~--giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k 270 (299)
T PRK09987 193 ADCTAHAIRVALNKPEVA--GLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLNTEK 270 (299)
T ss_pred HHHHHHHHHHhhccCCCC--CeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCCHHH
Confidence 788888888777653322 599999999999999999998864 4343 122222 233455677899999
Q ss_pred HHHhcCcccccccHHHHHHHHHHHH
Q 015080 378 IRLELNWTAKYTNLQESLEIAWRWQ 402 (413)
Q Consensus 378 ~~~~lG~~p~~~~~~e~l~~~~~~~ 402 (413)
+++.|||+|. +|+++|+++++-+
T Consensus 271 ~~~~lg~~~~--~~~~~l~~~~~~~ 293 (299)
T PRK09987 271 FQQNFALVLP--DWQVGVKRMLTEL 293 (299)
T ss_pred HHHHhCCCCc--cHHHHHHHHHHHH
Confidence 9999999974 8999999998644
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=311.75 Aligned_cols=295 Identities=22% Similarity=0.325 Sum_probs=217.6
Q ss_pred EEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-------CC
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-------NA 145 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-------~~ 145 (413)
||||||+||||++|+++|+++|++|+++.+........ ..+..+|+.|..+.+++++. .+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~-------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 68 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF-------------VNLVDLDIADYMDKEDFLAQIMAGDDFGD 68 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHH-------------HhhhhhhhhhhhhHHHHHHHHhcccccCC
Confidence 79999999999999999999999766654432221100 11223566554433332221 37
Q ss_pred CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHH
Q 015080 146 FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKK 225 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~ 225 (413)
+|+|||+||..... ..++...++.|+.++.+++++|++.++ ++|++||.++|+.....+.+|+.+..|.++|+.||.
T Consensus 69 ~d~Vih~A~~~~~~--~~~~~~~~~~n~~~t~~ll~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~ 145 (308)
T PRK11150 69 IEAIFHEGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTDDFIEEREYEKPLNVYGYSKF 145 (308)
T ss_pred ccEEEECceecCCc--CCChHHHHHHHHHHHHHHHHHHHHcCC-cEEEEcchHHhCcCCCCCCccCCCCCCCCHHHHHHH
Confidence 99999999864432 224556789999999999999999887 799999999999765556788888888999999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe-cccccCCCCceee
Q 015080 226 MAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK-GTDYSTADGTCVR 304 (413)
Q Consensus 226 ~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~ 304 (413)
++|.+++.+..+.+++++++||+.+|||+.... +. ...+...+...+.++.+ ..++ | +++..+
T Consensus 146 ~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~-~~--------~~~~~~~~~~~~~~~~~-~~i~~g------~~~~~r 209 (308)
T PRK11150 146 LFDEYVRQILPEANSQICGFRYFNVYGPREGHK-GS--------MASVAFHLNNQLNNGEN-PKLFEG------SENFKR 209 (308)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCC-Cc--------cchhHHHHHHHHhcCCC-CEEecC------CCceee
Confidence 999999999888899999999999999975321 00 00233444455555543 2233 3 667889
Q ss_pred ecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCC-ceeEecCCCCC--CccccccCHHHHHHh
Q 015080 305 DYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSAN-IKVIYEPRRPG--DYAEVYSDPTKIRLE 381 (413)
Q Consensus 305 ~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~--~~~~~~~d~~k~~~~ 381 (413)
+|+|++|+|++++.++++.. +++||+++++.+|+.|+++.+.+.+|.. ......+.... .......|++|+++
T Consensus 210 ~~i~v~D~a~a~~~~~~~~~---~~~yni~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~- 285 (308)
T PRK11150 210 DFVYVGDVAAVNLWFWENGV---SGIFNCGTGRAESFQAVADAVLAYHKKGEIEYIPFPDKLKGRYQAFTQADLTKLRA- 285 (308)
T ss_pred eeeeHHHHHHHHHHHHhcCC---CCeEEcCCCCceeHHHHHHHHHHHhCCCcceeccCccccccccceecccCHHHHHh-
Confidence 99999999999999988643 2599999999999999999999999853 22222222111 11234689999985
Q ss_pred cCcccccccHHHHHHHHHHHHH
Q 015080 382 LNWTAKYTNLQESLEIAWRWQK 403 (413)
Q Consensus 382 lG~~p~~~~~~e~l~~~~~~~~ 403 (413)
+||+|+.++++++|+++++|+.
T Consensus 286 ~g~~p~~~~~~~gl~~~~~~~~ 307 (308)
T PRK11150 286 AGYDKPFKTVAEGVAEYMAWLN 307 (308)
T ss_pred cCCCCCCCCHHHHHHHHHHHhh
Confidence 7999874489999999999975
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=310.77 Aligned_cols=300 Identities=21% Similarity=0.211 Sum_probs=222.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+||||++|+++|+++|++|++++|+........ .+........+++++.+|++|++++.+++ .++|+||
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~--~~~d~Vi 81 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTE-HLLALDGAKERLHLFKANLLEEGSFDSVV--DGCEGVF 81 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHH-HHHhccCCCCceEEEeccccCcchHHHHH--cCCCEEE
Confidence 78999999999999999999999999999887543322121 11111111247889999999999999999 5799999
Q ss_pred EcCcccCccCCcCChH-HHHHHHHHHHHHHHHHHHHc-CCCEEEEeccce--ecCCC---CCCCCCCCCCCCC------C
Q 015080 151 HFAAVAYVGESTLDPL-KYYHNITSNTLVVLESMARH-GVDTLIYSSTCA--TYGEP---EKMPITEETPQAP------I 217 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~-~~~~~n~~~~~~ll~~~~~~-~~~~iV~~SS~~--~~~~~---~~~~~~e~~~~~~------~ 217 (413)
|+|+.... ...++. ..+++|+.++.++++++++. ++++||++||.+ +|+.. ...+++|+.+..| .
T Consensus 82 h~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~~ 159 (322)
T PLN02662 82 HTASPFYH--DVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEESK 159 (322)
T ss_pred EeCCcccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhccc
Confidence 99996532 223443 78899999999999999987 788999999976 46532 2335777766544 3
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccC
Q 015080 218 NPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST 297 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 297 (413)
+.|+.+|.++|.+++.+.+++|++++++||+.+|||...+.. ......+..+..+.+ .
T Consensus 160 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~------------~~~~~~~~~~~~~~~-~--------- 217 (322)
T PLN02662 160 LWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTL------------NTSAEAILNLINGAQ-T--------- 217 (322)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCC------------CchHHHHHHHhcCCc-c---------
Confidence 589999999999999998889999999999999999743210 122222333333322 1
Q ss_pred CCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCC-ceeEecCCCCCCccccccCHH
Q 015080 298 ADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSAN-IKVIYEPRRPGDYAEVYSDPT 376 (413)
Q Consensus 298 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~ 376 (413)
.+++.++|+|++|+|++++.+++.+... +.||++ +..+++.|+++.+.+.++.. .+....+ .........+|++
T Consensus 218 -~~~~~~~~i~v~Dva~a~~~~~~~~~~~--~~~~~~-g~~~s~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~d~~ 292 (322)
T PLN02662 218 -FPNASYRWVDVRDVANAHIQAFEIPSAS--GRYCLV-ERVVHYSEVVKILHELYPTLQLPEKCAD-DKPYVPTYQVSKE 292 (322)
T ss_pred -CCCCCcCeEEHHHHHHHHHHHhcCcCcC--CcEEEe-CCCCCHHHHHHHHHHHCCCCCCCCCCCC-ccccccccccChH
Confidence 2235689999999999999999875443 478996 57899999999999998742 1111111 1123345678999
Q ss_pred HHHHhcCcccccccHHHHHHHHHHHHHhc
Q 015080 377 KIRLELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 377 k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
|++ .|||++ + +++++|+++++||+++
T Consensus 293 k~~-~lg~~~-~-~~~~~l~~~~~~~~~~ 318 (322)
T PLN02662 293 KAK-SLGIEF-I-PLEVSLKDTVESLKEK 318 (322)
T ss_pred HHH-HhCCcc-c-cHHHHHHHHHHHHHHc
Confidence 998 599986 5 8999999999999876
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=310.76 Aligned_cols=307 Identities=18% Similarity=0.221 Sum_probs=222.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+||||++|+++|+++|++|++++|......... .+..+.. ..++.++.+|++|.+++.+++ .++|+||
T Consensus 10 ~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~--~~~d~vi 85 (338)
T PLN00198 10 KTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIA-HLRALQE-LGDLKIFGADLTDEESFEAPI--AGCDLVF 85 (338)
T ss_pred CeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH-HHHhcCC-CCceEEEEcCCCChHHHHHHH--hcCCEEE
Confidence 89999999999999999999999999998887543322111 1111111 135889999999999999998 5799999
Q ss_pred EcCcccCccCCcCCh-HHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccceecCCCC----CCCCCCC---------CCCC
Q 015080 151 HFAAVAYVGESTLDP-LKYYHNITSNTLVVLESMARH-GVDTLIYSSTCATYGEPE----KMPITEE---------TPQA 215 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~-~~~~~~n~~~~~~ll~~~~~~-~~~~iV~~SS~~~~~~~~----~~~~~e~---------~~~~ 215 (413)
|+|+.... ...++ ...+++|+.++.++++++.+. ++++||++||.++|+... ..+++|+ .+..
T Consensus 86 h~A~~~~~--~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (338)
T PLN00198 86 HVATPVNF--ASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKP 163 (338)
T ss_pred EeCCCCcc--CCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCC
Confidence 99996421 22233 346799999999999999886 578999999999997532 2234443 2345
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc-c
Q 015080 216 PINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT-D 294 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~-~ 294 (413)
|.++|+.||.++|.+++.+++++|++++++||++||||+..+... .++..+. .+..+.+ +.+.|. .
T Consensus 164 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~-----------~~~~~~~-~~~~~~~-~~~~g~~~ 230 (338)
T PLN00198 164 PTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIP-----------SSLSLAM-SLITGNE-FLINGLKG 230 (338)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCC-----------CcHHHHH-HHHcCCc-cccccccc
Confidence 678899999999999999998899999999999999997532210 2233222 2333333 333331 0
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCC-CceeEecCCCCCCcccccc
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSA-NIKVIYEPRRPGDYAEVYS 373 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~ 373 (413)
.. .....++|+||+|+|++++.+++..... +.|+ +++...++.|+++.+.+.++. +.+....+.. ......+
T Consensus 231 ~~--~~~~~~~~i~V~D~a~a~~~~~~~~~~~--~~~~-~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~--~~~~~~~ 303 (338)
T PLN00198 231 MQ--MLSGSISITHVEDVCRAHIFLAEKESAS--GRYI-CCAANTSVPELAKFLIKRYPQYQVPTDFGDFP--SKAKLII 303 (338)
T ss_pred cc--cccCCcceeEHHHHHHHHHHHhhCcCcC--CcEE-EecCCCCHHHHHHHHHHHCCCCCCCccccccC--CCCcccc
Confidence 00 0122479999999999999999875433 4684 556788999999999999863 3333222111 1234568
Q ss_pred CHHHHHHhcCcccccccHHHHHHHHHHHHHhc
Q 015080 374 DPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 374 d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
|++|+++ +||+|++ +++|+|+++++||+++
T Consensus 304 ~~~k~~~-~G~~p~~-~l~~gi~~~~~~~~~~ 333 (338)
T PLN00198 304 SSEKLIS-EGFSFEY-GIEEIYDQTVEYFKAK 333 (338)
T ss_pred ChHHHHh-CCceecC-cHHHHHHHHHHHHHHc
Confidence 9999986 6999999 8999999999999975
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=313.24 Aligned_cols=313 Identities=19% Similarity=0.255 Sum_probs=223.5
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
++ |+||||||+||||++++++|+++|++|++++|...... .....+.. ..++.++.+|++|.+++.+++ .++|
T Consensus 9 ~~-~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~---~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~--~~~d 81 (353)
T PLN02896 9 AT-GTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSL---HLLSKWKE-GDRLRLFRADLQEEGSFDEAV--KGCD 81 (353)
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHH---HHHHhhcc-CCeEEEEECCCCCHHHHHHHH--cCCC
Confidence 45 88999999999999999999999999999887543222 22222211 256889999999999999998 5799
Q ss_pred EEEEcCcccCccC--CcCChHHH-----HHHHHHHHHHHHHHHHHcC-CCEEEEeccceecCCCCC-----CCCCCCCC-
Q 015080 148 AVMHFAAVAYVGE--STLDPLKY-----YHNITSNTLVVLESMARHG-VDTLIYSSTCATYGEPEK-----MPITEETP- 213 (413)
Q Consensus 148 vvi~~Ag~~~~~~--~~~~~~~~-----~~~n~~~~~~ll~~~~~~~-~~~iV~~SS~~~~~~~~~-----~~~~e~~~- 213 (413)
+|||+|+...... ...++... ++.|+.++.++++++++.+ +++||++||.++||.... .+++|+.+
T Consensus 82 ~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~ 161 (353)
T PLN02896 82 GVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQT 161 (353)
T ss_pred EEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCC
Confidence 9999999765432 22334443 4456799999999998874 789999999999985421 34566521
Q ss_pred -C-------CCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 214 -Q-------APINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 214 -~-------~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
. .+.++|+.||.++|.++..+++++|++++++||++||||+..+.. ..++..+...+.+..
T Consensus 162 p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~-----------~~~~~~~~~~~~g~~ 230 (353)
T PLN02896 162 PIDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSV-----------PSSIQVLLSPITGDS 230 (353)
T ss_pred cHHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCC-----------CchHHHHHHHhcCCc
Confidence 1 234589999999999999999889999999999999999754211 033333333222221
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCC-ceeEecCCC
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSAN-IKVIYEPRR 364 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~ 364 (413)
..+...+ ........++|||++|+|++++.+++.+... ++|++ ++.++++.|+++.+.+.++.. ..+...+..
T Consensus 231 ~~~~~~~---~~~~~~~~~dfi~v~Dva~a~~~~l~~~~~~--~~~~~-~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~ 304 (353)
T PLN02896 231 KLFSILS---AVNSRMGSIALVHIEDICDAHIFLMEQTKAE--GRYIC-CVDSYDMSELINHLSKEYPCSNIQVRLDEEK 304 (353)
T ss_pred ccccccc---ccccccCceeEEeHHHHHHHHHHHHhCCCcC--ccEEe-cCCCCCHHHHHHHHHHhCCCCCccccccccc
Confidence 1011111 0001112469999999999999999864433 47865 577899999999999999733 332222222
Q ss_pred CCCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccC
Q 015080 365 PGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 365 ~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 407 (413)
..... ...|+++++ +|||+|++ +++++|+++++|++++..
T Consensus 305 ~~~~~-~~~~~~~~~-~lGw~p~~-~l~~~i~~~~~~~~~~~~ 344 (353)
T PLN02896 305 RGSIP-SEISSKKLR-DLGFEYKY-GIEEIIDQTIDCCVDHGF 344 (353)
T ss_pred cCccc-cccCHHHHH-HcCCCccC-CHHHHHHHHHHHHHHCCC
Confidence 22222 356888887 69999999 899999999999998854
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=312.58 Aligned_cols=305 Identities=20% Similarity=0.262 Sum_probs=219.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+||||++++++|+++|++|++++|............. ......++.++.+|++|.+.+.+++ .++|+||
T Consensus 6 k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~v~~Dl~d~~~~~~~~--~~~d~Vi 82 (351)
T PLN02650 6 ETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLD-LPGATTRLTLWKADLAVEGSFDDAI--RGCTGVF 82 (351)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHh-ccCCCCceEEEEecCCChhhHHHHH--hCCCEEE
Confidence 899999999999999999999999999998875443332222111 1111135889999999999999998 5799999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccceecCCCC-CCC-CCCCCC---------CCCCC
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VDTLIYSSTCATYGEPE-KMP-ITEETP---------QAPIN 218 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~iV~~SS~~~~~~~~-~~~-~~e~~~---------~~~~~ 218 (413)
|+|+..... ..+.....+++|+.++.++++++++.+ +++|||+||.++|+... ..+ ++|+.. ..|.+
T Consensus 83 H~A~~~~~~-~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~ 161 (351)
T PLN02650 83 HVATPMDFE-SKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGW 161 (351)
T ss_pred EeCCCCCCC-CCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccc
Confidence 999865321 112234688999999999999999876 78999999987775432 222 355431 12456
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCC
Q 015080 219 PYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTA 298 (413)
Q Consensus 219 ~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 298 (413)
+|+.||.++|.+++.+++++|++++++||++||||+..... . ..++..+ ....+... . .
T Consensus 162 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~---~-------~~~~~~~-~~~~~~~~-~--~------- 220 (351)
T PLN02650 162 MYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSM---P-------PSLITAL-SLITGNEA-H--Y------- 220 (351)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCC---C-------ccHHHHH-HHhcCCcc-c--c-------
Confidence 89999999999999999889999999999999999753210 0 0222211 11111111 1 1
Q ss_pred CCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCC-ceeEecCCCCCCccccccCHHH
Q 015080 299 DGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSAN-IKVIYEPRRPGDYAEVYSDPTK 377 (413)
Q Consensus 299 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k 377 (413)
.....++|+|++|+|++++.+++++... +.| +++++.+++.|+++.+.+.++.. .+... +...........|++|
T Consensus 221 ~~~~~r~~v~V~Dva~a~~~~l~~~~~~--~~~-i~~~~~~s~~el~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~d~~k 296 (351)
T PLN02650 221 SIIKQGQFVHLDDLCNAHIFLFEHPAAE--GRY-ICSSHDATIHDLAKMLREKYPEYNIPARF-PGIDEDLKSVEFSSKK 296 (351)
T ss_pred CcCCCcceeeHHHHHHHHHHHhcCcCcC--ceE-EecCCCcCHHHHHHHHHHhCcccCCCCCC-CCcCcccccccCChHH
Confidence 1123479999999999999999865443 478 55678899999999999988722 22111 1112233345668888
Q ss_pred HHHhcCcccccccHHHHHHHHHHHHHhcc
Q 015080 378 IRLELNWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 378 ~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
++ +|||+|++ +++++|+++++|+++..
T Consensus 297 ~~-~lG~~p~~-~l~egl~~~i~~~~~~~ 323 (351)
T PLN02650 297 LT-DLGFTFKY-SLEDMFDGAIETCREKG 323 (351)
T ss_pred HH-HhCCCCCC-CHHHHHHHHHHHHHHcC
Confidence 75 79999999 89999999999998753
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=305.33 Aligned_cols=302 Identities=22% Similarity=0.235 Sum_probs=221.6
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
.+ |+||||||+||||++++++|+++|++|+++.|+....+....... ......+++++.+|++|.+++.+++ .++|
T Consensus 4 ~~-~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~--~~~d 79 (322)
T PLN02986 4 GG-KLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLA-LDGAKERLKLFKADLLEESSFEQAI--EGCD 79 (322)
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHh-ccCCCCceEEEecCCCCcchHHHHH--hCCC
Confidence 35 899999999999999999999999999988875544332222211 1111246899999999999999999 5799
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccceec--CCC---CCCCCCCCCCCC------
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-GVDTLIYSSTCATY--GEP---EKMPITEETPQA------ 215 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~iV~~SS~~~~--~~~---~~~~~~e~~~~~------ 215 (413)
+|||+|+..... ..+.....+++|+.++.++++++++. ++++||++||.++| +.. ...+++|+.+..
T Consensus 80 ~vih~A~~~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~ 158 (322)
T PLN02986 80 AVFHTASPVFFT-VKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRE 158 (322)
T ss_pred EEEEeCCCcCCC-CCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhc
Confidence 999999975321 11222357899999999999999986 68899999998754 432 233466665432
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccc
Q 015080 216 PINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDY 295 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 295 (413)
+.+.|+.||.++|.+++.+.+++|++++++||+.||||...+.. .+...++..+..+.+ + .
T Consensus 159 ~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~------------~~~~~~~~~~~~g~~-~--~---- 219 (322)
T PLN02986 159 TKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTL------------NFSVELIVDFINGKN-L--F---- 219 (322)
T ss_pred cccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCC------------CccHHHHHHHHcCCC-C--C----
Confidence 35789999999999999999889999999999999999743211 112223333333332 1 1
Q ss_pred cCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccc--ccc
Q 015080 296 STADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAE--VYS 373 (413)
Q Consensus 296 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~--~~~ 373 (413)
+.+.++|+|++|+|++++.+++.+... +.||++ ++.+|+.|+++.+.+.++. .++... ....+... ..+
T Consensus 220 ----~~~~~~~v~v~Dva~a~~~al~~~~~~--~~yni~-~~~~s~~e~~~~i~~~~~~-~~~~~~-~~~~~~~~~~~~~ 290 (322)
T PLN02986 220 ----NNRFYRFVDVRDVALAHIKALETPSAN--GRYIID-GPIMSVNDIIDILRELFPD-LCIADT-NEESEMNEMICKV 290 (322)
T ss_pred ----CCcCcceeEHHHHHHHHHHHhcCcccC--CcEEEe-cCCCCHHHHHHHHHHHCCC-CCCCCC-CccccccccCCcc
Confidence 235679999999999999999976543 589995 6689999999999999873 222111 11111112 237
Q ss_pred CHHHHHHhcCcccccccHHHHHHHHHHHHHhc
Q 015080 374 DPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 374 d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
|++|++ +|||+|+ +++|+|+++++|+++.
T Consensus 291 d~~~~~-~lg~~~~--~l~e~~~~~~~~~~~~ 319 (322)
T PLN02986 291 CVEKVK-NLGVEFT--PMKSSLRDTILSLKEK 319 (322)
T ss_pred CHHHHH-HcCCccc--CHHHHHHHHHHHHHHc
Confidence 999986 6999986 7999999999999874
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=301.55 Aligned_cols=303 Identities=32% Similarity=0.507 Sum_probs=245.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC-cEEE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF-DAVM 150 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~-dvvi 150 (413)
+|||||||||||++|+++|++.|++|++++|......... ..+.++.+|++|.+.+.++++ .. |+||
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~~~--~~~d~vi 69 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL----------SGVEFVVLDLTDRDLVDELAK--GVPDAVI 69 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc----------cccceeeecccchHHHHHHHh--cCCCEEE
Confidence 4999999999999999999999999999998655433111 357889999999988888874 44 9999
Q ss_pred EcCcccCccCCcC-ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCC-CCCCCCCC-CCCCCCChhHHHHHHH
Q 015080 151 HFAAVAYVGESTL-DPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEP-EKMPITEE-TPQAPINPYGKAKKMA 227 (413)
Q Consensus 151 ~~Ag~~~~~~~~~-~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~-~~~~~~e~-~~~~~~~~Y~~sK~~~ 227 (413)
|+|+......... ++...+++|+.++.++++++++.+++++||.||.++|+.. ...+++|+ .+..|.++|+.||.++
T Consensus 70 h~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~~~~~p~~~Yg~sK~~~ 149 (314)
T COG0451 70 HLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAA 149 (314)
T ss_pred EccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCcccccCCCCCCCHHHHHHHHH
Confidence 9999876543323 4567899999999999999999889999998887877654 33468888 6778888999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecc
Q 015080 228 EDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307 (413)
Q Consensus 228 e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i 307 (413)
|..++.+..++|++++++||+.||||+..+... +.+...++..+..+.+.+...+ ++...++++
T Consensus 150 E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~i 213 (314)
T COG0451 150 EQLLRAYARLYGLPVVILRPFNVYGPGDKPDLS----------SGVVSAFIRQLLKGEPIIVIGG------DGSQTRDFV 213 (314)
T ss_pred HHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCC----------cCcHHHHHHHHHhCCCcceEeC------CCceeEeeE
Confidence 999999988889999999999999998654310 1344444544555554345544 678889999
Q ss_pred cHHHHHHHHHHHHHhcCCCCccEEEecCCC-cccHHHHHHHHHHHcCCCce-eEecC--CCCCCccccccCHHHHHHhcC
Q 015080 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGK-GRSVKEFVEACKKATSANIK-VIYEP--RRPGDYAEVYSDPTKIRLELN 383 (413)
Q Consensus 308 ~v~Dva~a~~~~~~~~~~~~~~~yni~~~~-~~s~~e~~~~i~~~~g~~~~-~~~~~--~~~~~~~~~~~d~~k~~~~lG 383 (413)
|++|++++++.++++.... +||++++. ..++.|+++.+.+.+|.+.+ +...+ ..........+|.+|++++||
T Consensus 214 ~v~D~a~~~~~~~~~~~~~---~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 290 (314)
T COG0451 214 YVDDVADALLLALENPDGG---VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALG 290 (314)
T ss_pred eHHHHHHHHHHHHhCCCCc---EEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCcccccccCCHHHHHHHhC
Confidence 9999999999999976654 99999997 89999999999999998876 45444 233344566789999999999
Q ss_pred cccccccHHHHHHHHHHHHHhcc
Q 015080 384 WTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 384 ~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
|.|++ ++++++.++++|+....
T Consensus 291 ~~p~~-~~~~~i~~~~~~~~~~~ 312 (314)
T COG0451 291 WEPKV-SLEEGLADTLEWLLKKL 312 (314)
T ss_pred CCCCC-CHHHHHHHHHHHHHHhh
Confidence 99997 89999999999998764
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=302.25 Aligned_cols=303 Identities=26% Similarity=0.364 Sum_probs=231.3
Q ss_pred EEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--CCCcEE
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--NAFDAV 149 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~~~dvv 149 (413)
|||||||||||+++++.|.++|+ +|++++|..+. .. +..+ ....+..|+++.+.++.+.+. .++|+|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~-~~----~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~D~v 70 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDG-HK----FLNL-----ADLVIADYIDKEDFLDRLEKGAFGKIEAI 70 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCc-hh----hhhh-----hheeeeccCcchhHHHHHHhhccCCCCEE
Confidence 69999999999999999999998 78888764332 11 1111 123567889888887776542 579999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC-CCCCChhHHHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP-QAPINPYGKAKKMAE 228 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~-~~~~~~Y~~sK~~~e 228 (413)
||+|+.... ...++...+++|+.++.++++++++.++ ++|++||.++|+.... +..|+++ ..|.+.|+.||.++|
T Consensus 71 vh~A~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~-~~~e~~~~~~p~~~Y~~sK~~~e 146 (314)
T TIGR02197 71 FHQGACSDT--TETDGEYMMENNYQYSKRLLDWCAEKGI-PFIYASSAATYGDGEA-GFREGRELERPLNVYGYSKFLFD 146 (314)
T ss_pred EECccccCc--cccchHHHHHHHHHHHHHHHHHHHHhCC-cEEEEccHHhcCCCCC-CcccccCcCCCCCHHHHHHHHHH
Confidence 999997543 3456677899999999999999999876 8999999999987643 4555554 357889999999999
Q ss_pred HHHHHHHh--hCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeec
Q 015080 229 DIILDFSK--NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306 (413)
Q Consensus 229 ~~~~~~~~--~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 306 (413)
.+++.+.. ..+++++++||+.+|||+..... ....++..++..+..+.+ +.+.+....++++++.++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~ 216 (314)
T TIGR02197 147 QYVRRRVLPEALSAQVVGLRYFNVYGPREYHKG---------KMASVAFHLFNQIKAGGN-VKLFKSSEGFKDGEQLRDF 216 (314)
T ss_pred HHHHHHhHhhccCCceEEEEEeeccCCCCCCCC---------CcccHHHHHHHHHhcCCC-eEEecCccccCCCCceeee
Confidence 99987543 24689999999999999743210 001345555666665555 5555433334478889999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCC----CccccccCHHHHHHhc
Q 015080 307 IDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPG----DYAEVYSDPTKIRLEL 382 (413)
Q Consensus 307 i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~----~~~~~~~d~~k~~~~l 382 (413)
+|++|+++++..++.. .. +++||+++++++|+.|+++.+.+.+|.+.++...+.... ......+|++|+++.+
T Consensus 217 i~v~D~a~~i~~~~~~-~~--~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l 293 (314)
T TIGR02197 217 VYVKDVVDVNLWLLEN-GV--SGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGKYQYFTQADITKLRAAG 293 (314)
T ss_pred EEHHHHHHHHHHHHhc-cc--CceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCccccccccccccccchHHHHHhc
Confidence 9999999999999987 32 369999999999999999999999997765444333221 1124568999999999
Q ss_pred CcccccccHHHHHHHHHHHHH
Q 015080 383 NWTAKYTNLQESLEIAWRWQK 403 (413)
Q Consensus 383 G~~p~~~~~~e~l~~~~~~~~ 403 (413)
||+|++ +++|+|+++++|++
T Consensus 294 ~~~p~~-~l~~~l~~~~~~~~ 313 (314)
T TIGR02197 294 YYGPFT-TLEEGVKDYVQWLL 313 (314)
T ss_pred CCCCcc-cHHHHHHHHHHHHh
Confidence 999998 99999999999986
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=283.86 Aligned_cols=304 Identities=22% Similarity=0.239 Sum_probs=230.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
++|+|||||||||++|+++|+++||+|++..|+..+ ++..+.+.++...+.+...+.+||+|++++.+++ .++|.||
T Consensus 7 ~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~-~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai--~gcdgVf 83 (327)
T KOG1502|consen 7 KKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPED-EKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAI--DGCDGVF 83 (327)
T ss_pred cEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcch-hhhHHHHHhcccCcccceEEeccccccchHHHHH--hCCCEEE
Confidence 899999999999999999999999999999987665 3333445566555567999999999999999999 7899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccceecCCC-----CCCCCCCCCCCC------CCC
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VDTLIYSSTCATYGEP-----EKMPITEETPQA------PIN 218 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~iV~~SS~~~~~~~-----~~~~~~e~~~~~------~~~ 218 (413)
|.|....+.... ...+..+..+.||.++|++|++.+ ++|+|++||.++.... +...++|+.-.. ...
T Consensus 84 H~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~~ 162 (327)
T KOG1502|consen 84 HTASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKL 162 (327)
T ss_pred EeCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhHH
Confidence 999987654332 344789999999999999999997 9999999997654322 233455554211 135
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCC
Q 015080 219 PYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTA 298 (413)
Q Consensus 219 ~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 298 (413)
.|..||..+|..+.+++++.|++.+++.|+.|+||...+.. + .-...+...+.+... .
T Consensus 163 ~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l----~-------~s~~~~l~~i~G~~~-~---------- 220 (327)
T KOG1502|consen 163 WYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSL----N-------SSLNALLKLIKGLAE-T---------- 220 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCccccc----c-------hhHHHHHHHHhcccc-c----------
Confidence 79999999999999999999999999999999999754311 1 223333344443222 1
Q ss_pred CCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCc-eeEecCCCCCCccccccCHHH
Q 015080 299 DGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANI-KVIYEPRRPGDYAEVYSDPTK 377 (413)
Q Consensus 299 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~-~~~~~~~~~~~~~~~~~d~~k 377 (413)
..+....||||+|+|+|++.+++++... +.|.+. ++..++.|+++.+.+.+.... +...............++++|
T Consensus 221 ~~n~~~~~VdVrDVA~AHv~a~E~~~a~--GRyic~-~~~~~~~ei~~~l~~~~P~~~ip~~~~~~~~~~~~~~~~~~~k 297 (327)
T KOG1502|consen 221 YPNFWLAFVDVRDVALAHVLALEKPSAK--GRYICV-GEVVSIKEIADILRELFPDYPIPKKNAEEHEGFLTSFKVSSEK 297 (327)
T ss_pred CCCCceeeEeHHHHHHHHHHHHcCcccC--ceEEEe-cCcccHHHHHHHHHHhCCCCCCCCCCCccccccccccccccHH
Confidence 2334455999999999999999988876 588776 456669999999999987433 222222222233334579999
Q ss_pred HHHhcCcccccccHHHHHHHHHHHHHhc
Q 015080 378 IRLELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 378 ~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
++++.|++.. +++|++.++++++++.
T Consensus 298 ~k~lg~~~~~--~l~e~~~dt~~sl~~~ 323 (327)
T KOG1502|consen 298 LKSLGGFKFR--PLEETLSDTVESLREK 323 (327)
T ss_pred HHhcccceec--ChHHHHHHHHHHHHHh
Confidence 9965558765 8999999999999875
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=291.62 Aligned_cols=274 Identities=23% Similarity=0.246 Sum_probs=222.8
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEEE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMH 151 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi~ 151 (413)
+|||||||||||++++++|+++|++|++++|. .+|+.|.+++.++++..++|+|||
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~------------------------~~d~~~~~~~~~~~~~~~~d~vi~ 56 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS------------------------QLDLTDPEALERLLRAIRPDAVVN 56 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc------------------------ccCCCCHHHHHHHHHhCCCCEEEE
Confidence 48999999999999999999999999998652 379999999999997767899999
Q ss_pred cCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 015080 152 FAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDII 231 (413)
Q Consensus 152 ~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~ 231 (413)
+||..........+...+++|+.++.++++++++.+. ++|++||.++|+.....+++|+.+..|.+.|+.+|.++|.++
T Consensus 57 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~Ss~~vy~~~~~~~~~E~~~~~~~~~Y~~~K~~~E~~~ 135 (287)
T TIGR01214 57 TAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGA-RLVHISTDYVFDGEGKRPYREDDATNPLNVYGQSKLAGEQAI 135 (287)
T ss_pred CCccccccccccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeeeeecCCCCCCCCCCCCCCCcchhhHHHHHHHHHH
Confidence 9997654434445677899999999999999998875 899999999998766678999988888999999999999999
Q ss_pred HHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHHH
Q 015080 232 LDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVND 311 (413)
Q Consensus 232 ~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~D 311 (413)
+.+ +.+++++||+.+|||+... .++..++..+.++.+ +.+.+ +..++++|++|
T Consensus 136 ~~~----~~~~~ilR~~~v~G~~~~~--------------~~~~~~~~~~~~~~~-~~~~~--------~~~~~~v~v~D 188 (287)
T TIGR01214 136 RAA----GPNALIVRTSWLYGGGGGR--------------NFVRTMLRLAGRGEE-LRVVD--------DQIGSPTYAKD 188 (287)
T ss_pred HHh----CCCeEEEEeeecccCCCCC--------------CHHHHHHHHhhcCCC-ceEec--------CCCcCCcCHHH
Confidence 874 6799999999999997321 445556666665554 55543 35689999999
Q ss_pred HHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEe------c-----CCCCCCccccccCHHHHHH
Q 015080 312 LVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY------E-----PRRPGDYAEVYSDPTKIRL 380 (413)
Q Consensus 312 va~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~------~-----~~~~~~~~~~~~d~~k~~~ 380 (413)
+|++++.+++.+.. .+++||+++++.+++.|+++.+.+.+|.+..... . +..........+|++|+++
T Consensus 189 va~a~~~~~~~~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 267 (287)
T TIGR01214 189 LARVIAALLQRLAR-ARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLVK 267 (287)
T ss_pred HHHHHHHHHhhccC-CCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCCCCccccchHHHHH
Confidence 99999999987532 2369999999999999999999999997653111 1 1112223456799999999
Q ss_pred hcCcccccccHHHHHHHHHH
Q 015080 381 ELNWTAKYTNLQESLEIAWR 400 (413)
Q Consensus 381 ~lG~~p~~~~~~e~l~~~~~ 400 (413)
+|||.+ + +++++|+++++
T Consensus 268 ~lg~~~-~-~~~~~l~~~~~ 285 (287)
T TIGR01214 268 TLGTPL-P-HWREALRAYLQ 285 (287)
T ss_pred HcCCCC-c-cHHHHHHHHHh
Confidence 999954 4 89999998875
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=292.05 Aligned_cols=294 Identities=24% Similarity=0.348 Sum_probs=228.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+||||+++++.|+++|++|++++|....... +. ..+++++.+|++|.+++.+++ .++|+||
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~-----~~~~~~~~~D~~~~~~l~~~~--~~~d~vi 69 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRN----LE-----GLDVEIVEGDLRDPASLRKAV--AGCRALF 69 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccc----cc-----cCCceEEEeeCCCHHHHHHHH--hCCCEEE
Confidence 479999999999999999999999999999985433211 10 136889999999999999999 6799999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCC-CCCCCCCCCCCCCC---CChhHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGE-PEKMPITEETPQAP---INPYGKAKKM 226 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~-~~~~~~~e~~~~~~---~~~Y~~sK~~ 226 (413)
|+|+... ....+++..+++|+.++.++++++++.+++++|++||.++|+. ....+++|+.+..+ .+.|+.+|.+
T Consensus 70 ~~a~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~~~~Y~~sK~~ 147 (328)
T TIGR03466 70 HVAADYR--LWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKFL 147 (328)
T ss_pred Eeceecc--cCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccCCCCcccccChHHHHHHH
Confidence 9998542 2344677889999999999999999998999999999999985 34457788776655 4689999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeec
Q 015080 227 AEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306 (413)
Q Consensus 227 ~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 306 (413)
+|.+++.+..+++++++++||+.+|||+.... . .....+...+.+..+ ... +...+|
T Consensus 148 ~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~-----~-------~~~~~~~~~~~~~~~---~~~--------~~~~~~ 204 (328)
T TIGR03466 148 AEQAALEMAAEKGLPVVIVNPSTPIGPRDIKP-----T-------PTGRIIVDFLNGKMP---AYV--------DTGLNL 204 (328)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCCCCCC-----C-------cHHHHHHHHHcCCCc---eee--------CCCcce
Confidence 99999999888899999999999999974311 0 111223333333322 111 123589
Q ss_pred ccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCC---------------C-C---
Q 015080 307 IDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRP---------------G-D--- 367 (413)
Q Consensus 307 i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~---------------~-~--- 367 (413)
+|++|+|++++.++++... ++.|+++ ++++++.|+++.+.+.+|.+.+....|.+. . .
T Consensus 205 i~v~D~a~a~~~~~~~~~~--~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (328)
T TIGR03466 205 VHVDDVAEGHLLALERGRI--GERYILG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRV 281 (328)
T ss_pred EEHHHHHHHHHHHHhCCCC--CceEEec-CCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999999999987543 3688885 788999999999999999876544333110 0 0
Q ss_pred --------ccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhc
Q 015080 368 --------YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 368 --------~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
.....+|++|+++.|||+|+ +++++|+++++||+++
T Consensus 282 ~~~~~~~~~~~~~~d~~k~~~~lg~~p~--~~~~~i~~~~~~~~~~ 325 (328)
T TIGR03466 282 TVDGVRMAKKKMFFSSAKAVRELGYRQR--PAREALRDAVEWFRAN 325 (328)
T ss_pred CHHHHHHHhccCCCChHHHHHHcCCCCc--CHHHHHHHHHHHHHHh
Confidence 02456799999999999994 8999999999999875
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=287.79 Aligned_cols=254 Identities=27% Similarity=0.414 Sum_probs=202.9
Q ss_pred EEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEEE
Q 015080 74 LVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMH 151 (413)
Q Consensus 74 lITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi~ 151 (413)
|||||+||||++|+++|+++| ++|+++++...... .+.+.. .....++.+|++|++++.+++ .++|+|||
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~--~~~~~~----~~~~~~~~~Di~d~~~l~~a~--~g~d~V~H 72 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF--LKDLQK----SGVKEYIQGDITDPESLEEAL--EGVDVVFH 72 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEccccccccc--chhhhc----ccceeEEEeccccHHHHHHHh--cCCceEEE
Confidence 699999999999999999999 78999887554322 111111 133449999999999999999 78999999
Q ss_pred cCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCC-CCCC---CCCCCCC--CCCChhHHHHH
Q 015080 152 FAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEP-EKMP---ITEETPQ--APINPYGKAKK 225 (413)
Q Consensus 152 ~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~-~~~~---~~e~~~~--~~~~~Y~~sK~ 225 (413)
+|++..... ....+..+++|+.||++++++|++.+++++||+||.++++.. ...+ .+|+.+. .+.+.|+.||+
T Consensus 73 ~Aa~~~~~~-~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~SK~ 151 (280)
T PF01073_consen 73 TAAPVPPWG-DYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAESKA 151 (280)
T ss_pred eCccccccC-cccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHHHH
Confidence 999764422 345778999999999999999999999999999999988752 2222 3455543 35778999999
Q ss_pred HHHHHHHHHHh---h--CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCC
Q 015080 226 MAEDIILDFSK---N--SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300 (413)
Q Consensus 226 ~~e~~~~~~~~---~--~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 300 (413)
.+|+++.+... + ..+.+++|||+.||||++. .+.+.+...++.+.. ....| ++
T Consensus 152 ~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~---------------~~~~~~~~~~~~g~~-~~~~g------~~ 209 (280)
T PF01073_consen 152 LAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQ---------------RLVPRLVKMVRSGLF-LFQIG------DG 209 (280)
T ss_pred HHHHHHHhhcccccccccceeEEEEeccEEeCcccc---------------cccchhhHHHHhccc-ceeec------CC
Confidence 99999999766 2 2499999999999999864 556667777766644 33344 67
Q ss_pred ceeeecccHHHHHHHHHHHHHh---c---CCCCccEEEecCCCccc-HHHHHHHHHHHcCCCcee
Q 015080 301 TCVRDYIDVNDLVDAHVKALER---A---QPKKVGIYNVGTGKGRS-VKEFVEACKKATSANIKV 358 (413)
Q Consensus 301 ~~~~~~i~v~Dva~a~~~~~~~---~---~~~~~~~yni~~~~~~s-~~e~~~~i~~~~g~~~~~ 358 (413)
....+++||+|+|.|++++++. + ....|+.|+|+++++++ ++|+...+.+.+|.+.+.
T Consensus 210 ~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~ 274 (280)
T PF01073_consen 210 NNLFDFVYVENVAHAHVLAAQALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPPK 274 (280)
T ss_pred CceECcEeHHHHHHHHHHHHHHhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCCc
Confidence 7889999999999999998773 2 33356899999999998 999999999999988776
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=292.65 Aligned_cols=277 Identities=24% Similarity=0.252 Sum_probs=212.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+|+||++|++.|.+.|++|+.++|. .+|++|.+++.+.++..++|+||
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~------------------------~~dl~d~~~~~~~~~~~~pd~Vi 56 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS------------------------DLDLTDPEAVAKLLEAFKPDVVI 56 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT------------------------CS-TTSHHHHHHHHHHH--SEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch------------------------hcCCCCHHHHHHHHHHhCCCeEe
Confidence 689999999999999999999999999988542 38999999999999888899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
||||+..+..++.+++..+.+|+.++.++++++.+.+. ++||+||..||++....+++|++++.|.+.||.+|+++|..
T Consensus 57 n~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~-~li~~STd~VFdG~~~~~y~E~d~~~P~~~YG~~K~~~E~~ 135 (286)
T PF04321_consen 57 NCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGA-RLIHISTDYVFDGDKGGPYTEDDPPNPLNVYGRSKLEGEQA 135 (286)
T ss_dssp E------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT--EEEEEEEGGGS-SSTSSSB-TTS----SSHHHHHHHHHHHH
T ss_pred ccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCC-cEEEeeccEEEcCCcccccccCCCCCCCCHHHHHHHHHHHH
Confidence 99999888778889999999999999999999999886 99999999999888777899999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHH
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~ 310 (413)
+++.. -+..++|++.+||+... .++..+.+.+.++++ +.+. .+..++++|++
T Consensus 136 v~~~~----~~~~IlR~~~~~g~~~~---------------~~~~~~~~~~~~~~~-i~~~--------~d~~~~p~~~~ 187 (286)
T PF04321_consen 136 VRAAC----PNALILRTSWVYGPSGR---------------NFLRWLLRRLRQGEP-IKLF--------DDQYRSPTYVD 187 (286)
T ss_dssp HHHH-----SSEEEEEE-SEESSSSS---------------SHHHHHHHHHHCTSE-EEEE--------SSCEE--EEHH
T ss_pred HHHhc----CCEEEEecceecccCCC---------------chhhhHHHHHhcCCe-eEee--------CCceeCCEEHH
Confidence 98843 27999999999998432 688888888888776 7764 45778999999
Q ss_pred HHHHHHHHHHHhcCC--CCccEEEecCCCcccHHHHHHHHHHHcCCCc-eeEecCC-----CCCCccccccCHHHHHHhc
Q 015080 311 DLVDAHVKALERAQP--KKVGIYNVGTGKGRSVKEFVEACKKATSANI-KVIYEPR-----RPGDYAEVYSDPTKIRLEL 382 (413)
Q Consensus 311 Dva~a~~~~~~~~~~--~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~-~~~~~~~-----~~~~~~~~~~d~~k~~~~l 382 (413)
|+|+++..++++... ...++||+++++.+|+.|+++.+.+.+|.+. .+...+. ....+.+..+|++|+++.+
T Consensus 188 dlA~~i~~l~~~~~~~~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~L~~~kl~~~~ 267 (286)
T PF04321_consen 188 DLARVILELIEKNLSGASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTSLDCRKLKNLL 267 (286)
T ss_dssp HHHHHHHHHHHHHHH-GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-B--HHHHHCT
T ss_pred HHHHHHHHHHHhcccccccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCcccccHHHHHHcc
Confidence 999999999997654 1236999999999999999999999999777 4443322 2234557789999999999
Q ss_pred CcccccccHHHHHHHHHHHH
Q 015080 383 NWTAKYTNLQESLEIAWRWQ 402 (413)
Q Consensus 383 G~~p~~~~~~e~l~~~~~~~ 402 (413)
|++++ +|+++|+++++-|
T Consensus 268 g~~~~--~~~~~l~~~~~~~ 285 (286)
T PF04321_consen 268 GIKPP--PWREGLEELVKQY 285 (286)
T ss_dssp TS-----BHHHHHHHHHHHH
T ss_pred CCCCc--CHHHHHHHHHHHh
Confidence 99987 7999999998754
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=292.12 Aligned_cols=276 Identities=22% Similarity=0.319 Sum_probs=216.9
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
++ |+||||||+||||++++++|+++| ++|++++|...... .+.+... ..++.++.+|++|.+++.+++ .+
T Consensus 3 ~~-k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~----~~~~~~~-~~~~~~v~~Dl~d~~~l~~~~--~~ 74 (324)
T TIGR03589 3 NN-KSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQW----EMQQKFP-APCLRFFIGDVRDKERLTRAL--RG 74 (324)
T ss_pred CC-CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHH----HHHHHhC-CCcEEEEEccCCCHHHHHHHH--hc
Confidence 35 899999999999999999999986 78998876533221 1111111 146889999999999999998 57
Q ss_pred CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHH
Q 015080 146 FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKK 225 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~ 225 (413)
+|+|||+||....+....++...+++|+.++.++++++.+.++++||++||.. +..|.++|+.||+
T Consensus 75 iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~--------------~~~p~~~Y~~sK~ 140 (324)
T TIGR03589 75 VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDK--------------AANPINLYGATKL 140 (324)
T ss_pred CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCC--------------CCCCCCHHHHHHH
Confidence 99999999976544445567789999999999999999999889999999953 2334678999999
Q ss_pred HHHHHHHHHHh---hCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCce
Q 015080 226 MAEDIILDFSK---NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTC 302 (413)
Q Consensus 226 ~~e~~~~~~~~---~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 302 (413)
++|.+++.++. ++|++++++|||+||||+. .+++.+...+..+.+.+++. ++.+
T Consensus 141 ~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~----------------~~i~~~~~~~~~~~~~~~i~-------~~~~ 197 (324)
T TIGR03589 141 ASDKLFVAANNISGSKGTRFSVVRYGNVVGSRG----------------SVVPFFKSLKEEGVTELPIT-------DPRM 197 (324)
T ss_pred HHHHHHHHHHhhccccCcEEEEEeecceeCCCC----------------CcHHHHHHHHHhCCCCeeeC-------CCCc
Confidence 99999987643 4799999999999999852 45677777766654225554 5677
Q ss_pred eeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCc-cccccCHHHHHHh
Q 015080 303 VRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDY-AEVYSDPTKIRLE 381 (413)
Q Consensus 303 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~-~~~~~d~~k~~~~ 381 (413)
.++|+|++|+|++++.++++... +++| ++++..+++.|+++.+.+.++ +...+.++++. ....+|++|++++
T Consensus 198 ~r~~i~v~D~a~a~~~al~~~~~--~~~~-~~~~~~~sv~el~~~i~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~ 270 (324)
T TIGR03589 198 TRFWITLEQGVNFVLKSLERMLG--GEIF-VPKIPSMKITDLAEAMAPECP----HKIVGIRPGEKLHEVMITEDDARHT 270 (324)
T ss_pred eEeeEEHHHHHHHHHHHHhhCCC--CCEE-ccCCCcEEHHHHHHHHHhhCC----eeEeCCCCCchhHhhhcChhhhhhh
Confidence 89999999999999999986433 3688 466778999999999998643 33334444442 3466899999999
Q ss_pred cCcccccccHHHHHH
Q 015080 382 LNWTAKYTNLQESLE 396 (413)
Q Consensus 382 lG~~p~~~~~~e~l~ 396 (413)
|||+|++ +++++++
T Consensus 271 lg~~~~~-~l~~~~~ 284 (324)
T TIGR03589 271 YELGDYY-AILPSIS 284 (324)
T ss_pred cCCCCeE-EEccccc
Confidence 9999999 8999885
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=259.54 Aligned_cols=296 Identities=20% Similarity=0.257 Sum_probs=250.0
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
||+|||||++|.+|++|.+.+...|. +-.++. .+ -.+||++.++.+.++++.++.
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~---~s--------------------kd~DLt~~a~t~~lF~~ekPt 57 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFI---GS--------------------KDADLTNLADTRALFESEKPT 57 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEe---cc--------------------ccccccchHHHHHHHhccCCc
Confidence 48999999999999999999999977 222221 11 128999999999999999999
Q ss_pred EEEEcCcccCcc-CCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC----CCCC-CChhH
Q 015080 148 AVMHFAAVAYVG-ESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET----PQAP-INPYG 221 (413)
Q Consensus 148 vvi~~Ag~~~~~-~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~----~~~~-~~~Y~ 221 (413)
+|||+|+....- .....+.+++..|+.-..|++..+.+.|++++|++.|+++|.+....|++|+. |+.| .-.|+
T Consensus 58 hVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gYs 137 (315)
T KOG1431|consen 58 HVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGYS 137 (315)
T ss_pred eeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHHH
Confidence 999999865321 23445778999999999999999999999999999999999988888999986 3433 44799
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHH----HhccccceeEecccccC
Q 015080 222 KAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDA----ARGIIAGLKVKGTDYST 297 (413)
Q Consensus 222 ~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~g~~~~~ 297 (413)
.+|.++.-..+.|+.++|-..+++.|.++|||.+..+.-. |.++|.++.. ..++...+.++|
T Consensus 138 yAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~---------sHVlPali~r~h~ak~~gtd~~~VwG----- 203 (315)
T KOG1431|consen 138 YAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPEN---------SHVLPALIHRFHEAKRNGTDELTVWG----- 203 (315)
T ss_pred HHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCccc---------ccchHHHHHHHHHHHhcCCceEEEec-----
Confidence 9999999888999999999999999999999987654322 2555555443 445554599999
Q ss_pred CCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCC--cccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCH
Q 015080 298 ADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGK--GRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDP 375 (413)
Q Consensus 298 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~--~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~ 375 (413)
+|...|+|+|++|+|+++++++.+.+.. +..+++.++ .+|++|+++++.+++++..+..+...++........|+
T Consensus 204 -sG~PlRqFiys~DLA~l~i~vlr~Y~~v--Epiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~DttK~DGq~kKtasn 280 (315)
T KOG1431|consen 204 -SGSPLRQFIYSDDLADLFIWVLREYEGV--EPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDTTKSDGQFKKTASN 280 (315)
T ss_pred -CCChHHHHhhHhHHHHHHHHHHHhhcCc--cceEeccCccceeEHHHHHHHHHHHhCCCceEEeeccCCCCCcccccch
Confidence 9999999999999999999999987765 688898888 89999999999999999999998888777777889999
Q ss_pred HHHHHhcCcccccccHHHHHHHHHHHHHhcc
Q 015080 376 TKIRLELNWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 376 ~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
+|++ .|+|.|+.++++++|.++++||.++.
T Consensus 281 sKL~-sl~pd~~ft~l~~ai~~t~~Wy~~Ny 310 (315)
T KOG1431|consen 281 SKLR-SLLPDFKFTPLEQAISETVQWYLDNY 310 (315)
T ss_pred HHHH-HhCCCcccChHHHHHHHHHHHHHHhH
Confidence 9998 69999999789999999999998863
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=269.13 Aligned_cols=273 Identities=22% Similarity=0.249 Sum_probs=238.0
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
|| |||||++|.+|.+|++.|. .+++|+.+++. . +|++|++.+.+++.+.++|+|
T Consensus 1 M~-iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~------------------~------~Ditd~~~v~~~i~~~~PDvV 54 (281)
T COG1091 1 MK-ILITGANGQLGTELRRALP-GEFEVIATDRA------------------E------LDITDPDAVLEVIRETRPDVV 54 (281)
T ss_pred Cc-EEEEcCCChHHHHHHHHhC-CCceEEeccCc------------------c------ccccChHHHHHHHHhhCCCEE
Confidence 45 9999999999999999999 77899987541 1 899999999999998899999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAED 229 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 229 (413)
||+|+....+.++.+++..+.+|..++.++.+++.+.|. ++||+||.+||++....++.|++++.|.+.||.||+++|.
T Consensus 55 In~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga-~lVhiSTDyVFDG~~~~~Y~E~D~~~P~nvYG~sKl~GE~ 133 (281)
T COG1091 55 INAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGA-RLVHISTDYVFDGEKGGPYKETDTPNPLNVYGRSKLAGEE 133 (281)
T ss_pred EECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCC-eEEEeecceEecCCCCCCCCCCCCCCChhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999986 9999999999999888899999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccH
Q 015080 230 IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 230 ~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
.++++ +-+..++|.+++||.... .|+..+++.+..+++ +.+ -.++..+.+++
T Consensus 134 ~v~~~----~~~~~I~Rtswv~g~~g~---------------nFv~tml~la~~~~~-l~v--------v~Dq~gsPt~~ 185 (281)
T COG1091 134 AVRAA----GPRHLILRTSWVYGEYGN---------------NFVKTMLRLAKEGKE-LKV--------VDDQYGSPTYT 185 (281)
T ss_pred HHHHh----CCCEEEEEeeeeecCCCC---------------CHHHHHHHHhhcCCc-eEE--------ECCeeeCCccH
Confidence 99984 567999999999998632 788888888888877 666 35688899999
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeE-e-----cCCCCCCccccccCHHHHHHhcC
Q 015080 310 NDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVI-Y-----EPRRPGDYAEVYSDPTKIRLELN 383 (413)
Q Consensus 310 ~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~-~-----~~~~~~~~~~~~~d~~k~~~~lG 383 (413)
.|+|+++..++...... ++||+++....||.|+++.|.+.++.+.... . .|.....+.+..+|+.|+++.+|
T Consensus 186 ~dlA~~i~~ll~~~~~~--~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~g 263 (281)
T COG1091 186 EDLADAILELLEKEKEG--GVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFG 263 (281)
T ss_pred HHHHHHHHHHHhccccC--cEEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccccchHHHHHHhC
Confidence 99999999999976654 4999999988999999999999998555332 1 12233445567799999999999
Q ss_pred cccccccHHHHHHHHHHH
Q 015080 384 WTAKYTNLQESLEIAWRW 401 (413)
Q Consensus 384 ~~p~~~~~~e~l~~~~~~ 401 (413)
+.+. +|+++++.+++.
T Consensus 264 ~~~~--~w~~~l~~~~~~ 279 (281)
T COG1091 264 LSLP--EWREALKALLDE 279 (281)
T ss_pred CCCc--cHHHHHHHHHhh
Confidence 9887 799999998764
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=293.25 Aligned_cols=284 Identities=19% Similarity=0.262 Sum_probs=219.7
Q ss_pred eEEEEE----cCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhh----hhhhhcCCCCceEEEEccCCCHHHHHHHhh
Q 015080 71 THVLVT----GGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVK----VLQELFPEPGRLQFIYADLGDAKAVNKFFS 142 (413)
Q Consensus 71 k~vlIT----GasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 142 (413)
|+|||| |||||||++|+++|+++|++|++++|.......... .+.++. ..+++++.+|++| +.+++.
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d---~~~~~~ 127 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELS--SAGVKTVWGDPAD---VKSKVA 127 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhh--hcCceEEEecHHH---HHhhhc
Confidence 789999 999999999999999999999999986543211110 011111 1358899999987 444444
Q ss_pred cCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHH
Q 015080 143 ENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGK 222 (413)
Q Consensus 143 ~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~ 222 (413)
..++|+|||+++. +..+++++++++++.++++||++||.++|+.....+..|+.+..|..
T Consensus 128 ~~~~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~~~~~p~~---- 187 (378)
T PLN00016 128 GAGFDVVYDNNGK----------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEGDAVKPKA---- 187 (378)
T ss_pred cCCccEEEeCCCC----------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCCCcCCCcc----
Confidence 3689999999762 13467889999999999999999999999876655677776655543
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCce
Q 015080 223 AKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTC 302 (413)
Q Consensus 223 sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 302 (413)
+|..+|.+++. .+++++++||+++|||+... .+...++..+..+.+ +.+++ ++.+
T Consensus 188 sK~~~E~~l~~----~~l~~~ilRp~~vyG~~~~~--------------~~~~~~~~~~~~~~~-i~~~g------~g~~ 242 (378)
T PLN00016 188 GHLEVEAYLQK----LGVNWTSFRPQYIYGPGNNK--------------DCEEWFFDRLVRGRP-VPIPG------SGIQ 242 (378)
T ss_pred hHHHHHHHHHH----cCCCeEEEeceeEECCCCCC--------------chHHHHHHHHHcCCc-eeecC------CCCe
Confidence 89999988764 68999999999999996421 344455666666665 66666 7889
Q ss_pred eeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCC----------CCccccc
Q 015080 303 VRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRP----------GDYAEVY 372 (413)
Q Consensus 303 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----------~~~~~~~ 372 (413)
.++|+|++|+|++++.+++++... +++||+++++.+|+.|+++.+.+.+|.+.++...+... .......
T Consensus 243 ~~~~i~v~Dva~ai~~~l~~~~~~-~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~~~~ 321 (378)
T PLN00016 243 LTQLGHVKDLASMFALVVGNPKAA-GQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQHFF 321 (378)
T ss_pred eeceecHHHHHHHHHHHhcCcccc-CCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCccccccccccccccc
Confidence 999999999999999999875432 37999999999999999999999999887654322111 1122345
Q ss_pred cCHHHHHHhcCcccccccHHHHHHHHHHHHHhcc
Q 015080 373 SDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 373 ~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
.|++|++++|||+|++ +++|+|+++++||+++.
T Consensus 322 ~d~~ka~~~LGw~p~~-~l~egl~~~~~~~~~~~ 354 (378)
T PLN00016 322 ASPRKAKEELGWTPKF-DLVEDLKDRYELYFGRG 354 (378)
T ss_pred cCHHHHHHhcCCCCCC-CHHHHHHHHHHHHHhcC
Confidence 6999999999999999 89999999999998764
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=280.37 Aligned_cols=308 Identities=24% Similarity=0.304 Sum_probs=247.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
.+++||||+||+|++|+++|++++ .+|+++|.......-..+.... ....+.++.+|+.|..++.+++ .++ .
T Consensus 5 ~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~---~~~~v~~~~~D~~~~~~i~~a~--~~~-~ 78 (361)
T KOG1430|consen 5 LSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF---RSGRVTVILGDLLDANSISNAF--QGA-V 78 (361)
T ss_pred CEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc---cCCceeEEecchhhhhhhhhhc--cCc-e
Confidence 799999999999999999999998 7999998754422211111111 2468999999999999999999 677 8
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCC-CCCCCCCCCC--CCChhHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEK-MPITEETPQA--PINPYGKAKK 225 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~-~~~~e~~~~~--~~~~Y~~sK~ 225 (413)
|+|||+...+.....+++..+++|+.||++++++|.+.+++++||+||..|...... ...+|+.|.+ ..++|+.||+
T Consensus 79 Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p~p~~~~d~Y~~sKa 158 (361)
T KOG1430|consen 79 VVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLPYPLKHIDPYGESKA 158 (361)
T ss_pred EEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCCCCccccccccchHHH
Confidence 888888766655566789999999999999999999999999999999998755433 3445555443 3469999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeee
Q 015080 226 MAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRD 305 (413)
Q Consensus 226 ~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 305 (413)
.+|.++++.+...++.+++|||..||||++. .+++.+...++.+.. +-..| +++.+.+
T Consensus 159 ~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~---------------~~~~~i~~~~~~g~~-~f~~g------~~~~~~~ 216 (361)
T KOG1430|consen 159 LAEKLVLEANGSDDLYTCALRPPGIYGPGDK---------------RLLPKIVEALKNGGF-LFKIG------DGENLND 216 (361)
T ss_pred HHHHHHHHhcCCCCeeEEEEccccccCCCCc---------------cccHHHHHHHHccCc-eEEee------ccccccc
Confidence 9999999987666799999999999999875 788888999888876 33334 6788899
Q ss_pred cccHHHHHHHHHHHHHh----cCCCCccEEEecCCCcccHHHHHHHHHHHcCCCce-eEecCCC----------------
Q 015080 306 YIDVNDLVDAHVKALER----AQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIK-VIYEPRR---------------- 364 (413)
Q Consensus 306 ~i~v~Dva~a~~~~~~~----~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~~~---------------- 364 (413)
+++++.++.|++.+... .....|+.|+|+++.++...++...+.+.+|...+ ....|.+
T Consensus 217 ~~~~~Nva~ahilA~~aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l 296 (361)
T KOG1430|consen 217 FTYGENVAWAHILAARALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLL 296 (361)
T ss_pred eEEechhHHHHHHHHHHHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhc
Confidence 99999999999987763 23345789999999999888888899999998888 4333321
Q ss_pred -CCC-----------ccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccC
Q 015080 365 -PGD-----------YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 365 -~~~-----------~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 407 (413)
+.. .....+|.+|++++|||.|.. +++|++.+++.|+....+
T Consensus 297 ~p~~p~lt~~~v~~~~~~~~f~~~kA~~~lgY~P~~-~~~e~~~~~~~~~~~~~~ 350 (361)
T KOG1430|consen 297 RPYQPILTRFRVALLGVTRTFSIEKAKRELGYKPLV-SLEEAIQRTIHWVASESD 350 (361)
T ss_pred cCCCCCcChhheeeeccccccCHHHHHHhhCCCCcC-CHHHHHHHHHHHHhhhhh
Confidence 000 114578999999999999998 999999999998876643
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=288.85 Aligned_cols=290 Identities=18% Similarity=0.170 Sum_probs=214.0
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcC---CCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFP---EPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
+|+||||||+||||++++++|+++|++|+++.|+......+ +.+..... ...++.++.+|++|.+++.+++ .++
T Consensus 53 ~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i--~~~ 129 (367)
T PLN02686 53 ARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEAF--DGC 129 (367)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHHH--Hhc
Confidence 38999999999999999999999999999877643221111 11111000 0135788999999999999999 568
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccc--eecCCC--CC--CCCCCCC------C
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-GVDTLIYSSTC--ATYGEP--EK--MPITEET------P 213 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~iV~~SS~--~~~~~~--~~--~~~~e~~------~ 213 (413)
|+|||+|+...+...........++|+.++.++++++++. +++++|++||. .+|+.. .. ..++|+. +
T Consensus 130 d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~~~ 209 (367)
T PLN02686 130 AGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDESFC 209 (367)
T ss_pred cEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCChhhc
Confidence 9999999976443211122355678999999999999986 79999999996 477642 11 2355543 3
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
..|.++|+.||.++|.+++.+++++|+++++|||++||||+.... ....+...+. +. +.+.|
T Consensus 210 ~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~--------------~~~~~~~~~~-g~--~~~~g- 271 (367)
T PLN02686 210 RDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRR--------------NSTATIAYLK-GA--QEMLA- 271 (367)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCC--------------CChhHHHHhc-CC--CccCC-
Confidence 446678999999999999999888899999999999999974311 0011222222 22 33333
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCC-CCCcccc
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRR-PGDYAEV 371 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-~~~~~~~ 371 (413)
++ .++|+||+|+|++++.+++.. ....+++| +++++.+++.|+++.+.+.+|.+.+....+.. ..+....
T Consensus 272 -----~g--~~~~v~V~Dva~A~~~al~~~~~~~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~d~~~~ 343 (367)
T PLN02686 272 -----DG--LLATADVERLAEAHVCVYEAMGNKTAFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSSSDDTPARF 343 (367)
T ss_pred -----CC--CcCeEEHHHHHHHHHHHHhccCCCCCCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchhhcCCcccc
Confidence 33 357999999999999999853 11123588 77889999999999999999988776655555 5677788
Q ss_pred ccCHHHHHHhcCccccc
Q 015080 372 YSDPTKIRLELNWTAKY 388 (413)
Q Consensus 372 ~~d~~k~~~~lG~~p~~ 388 (413)
..|++|++++|||.|+-
T Consensus 344 ~~d~~kl~~~l~~~~~~ 360 (367)
T PLN02686 344 ELSNKKLSRLMSRTRRC 360 (367)
T ss_pred cccHHHHHHHHHHhhhc
Confidence 89999999999999874
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=266.04 Aligned_cols=236 Identities=33% Similarity=0.542 Sum_probs=202.2
Q ss_pred EEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEEEc
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMHF 152 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi~~ 152 (413)
|||||||||||++++++|+++|++|+.+.|...+....... .++.++.+|+.|.+.+.++++..++|+|||+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~--------~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~ 72 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK--------LNVEFVIGDLTDKEQLEKLLEKANIDVVIHL 72 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH--------TTEEEEESETTSHHHHHHHHHHHTESEEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccccc--------ceEEEEEeeccccccccccccccCceEEEEe
Confidence 79999999999999999999999999887654433222111 2789999999999999999988889999999
Q ss_pred CcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 015080 153 AAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIIL 232 (413)
Q Consensus 153 Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~ 232 (413)
|+....+.........++.|+.++.++++++++.+++++|++||..+|+.....+++|+.+..|.++|+.+|...|.+++
T Consensus 73 a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~ 152 (236)
T PF01370_consen 73 AAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPDGEPIDEDSPINPLSPYGASKRAAEELLR 152 (236)
T ss_dssp BSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETTSGCCHSSHHHHHHHHHHHHHH
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99754323335678889999999999999999999999999999999999877788999999999999999999999999
Q ss_pred HHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHHHH
Q 015080 233 DFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDL 312 (413)
Q Consensus 233 ~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dv 312 (413)
.+.++++++++++||+.+|||.. .. ...+.+++.++..+..+++ +.+++ ++++.++|+|++|+
T Consensus 153 ~~~~~~~~~~~~~R~~~vyG~~~-~~---------~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~i~v~D~ 215 (236)
T PF01370_consen 153 DYAKKYGLRVTILRPPNVYGPGN-PN---------NNSSSFLPSLIRQALKGKP-IKIPG------DGSQVRDFIHVDDL 215 (236)
T ss_dssp HHHHHHTSEEEEEEESEEESTTS-SS---------SSTSSHHHHHHHHHHTTSS-EEEES------TSSCEEEEEEHHHH
T ss_pred ccccccccccccccccccccccc-cc---------cccccccchhhHHhhcCCc-ccccC------CCCCccceEEHHHH
Confidence 99988899999999999999981 00 0112788889999988887 88888 89999999999999
Q ss_pred HHHHHHHHHhcCCCCccEEEec
Q 015080 313 VDAHVKALERAQPKKVGIYNVG 334 (413)
Q Consensus 313 a~a~~~~~~~~~~~~~~~yni~ 334 (413)
|++++.+++++.. .+++|||+
T Consensus 216 a~~~~~~~~~~~~-~~~~yNig 236 (236)
T PF01370_consen 216 AEAIVAALENPKA-AGGIYNIG 236 (236)
T ss_dssp HHHHHHHHHHSCT-TTEEEEES
T ss_pred HHHHHHHHhCCCC-CCCEEEeC
Confidence 9999999999882 33799995
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=253.00 Aligned_cols=313 Identities=25% Similarity=0.284 Sum_probs=250.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhc-CCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELF-PEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
|++||||-||+-|+.|++.|+++|++|+.+.|......-..-.+.+.. ....++.++.+||+|...+.++++...+|-|
T Consensus 3 K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~PdEI 82 (345)
T COG1089 3 KVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPDEI 82 (345)
T ss_pred ceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCchhh
Confidence 899999999999999999999999999999875433221110111111 1234588999999999999999999999999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC--CEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV--DTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMA 227 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~ 227 (413)
+|+|+.++.+.+.+.|+.+.+++..|+.++|++++..+. -+|...||+..||.....|.+|..|..|.+||+.+|..+
T Consensus 83 YNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPFyPrSPYAvAKlYa 162 (345)
T COG1089 83 YNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYA 162 (345)
T ss_pred eeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccCCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999998753 489999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHH---HHhccccceeEecccccCCCCceee
Q 015080 228 EDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFD---AARGIIAGLKVKGTDYSTADGTCVR 304 (413)
Q Consensus 228 e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~g~~~~~~~~~~~~ 304 (413)
...+..+++.+|+-.+. |..|... ++..|+. .+...+.. .++.+...--..| +-++.|
T Consensus 163 ~W~tvNYResYgl~Acn---GILFNHE-SP~Rge~---------FVTRKIt~ava~Ik~G~q~~l~lG------NldAkR 223 (345)
T COG1089 163 YWITVNYRESYGLFACN---GILFNHE-SPLRGET---------FVTRKITRAVARIKLGLQDKLYLG------NLDAKR 223 (345)
T ss_pred HheeeehHhhcCceeec---ceeecCC-CCCCccc---------eehHHHHHHHHHHHccccceEEec------cccccc
Confidence 99999999999988775 4444332 1222222 33333333 3333332122233 889999
Q ss_pred ecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeE-------------------ecCC--
Q 015080 305 DYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVI-------------------YEPR-- 363 (413)
Q Consensus 305 ~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~-------------------~~~~-- 363 (413)
||-|..|.++++..+++++.+ +.|.+++|+..|++|+++...+..|.+.++. ..|.
T Consensus 224 DWG~A~DYVe~mwlmLQq~~P---ddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~idp~~f 300 (345)
T COG1089 224 DWGHAKDYVEAMWLMLQQEEP---DDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYF 300 (345)
T ss_pred cccchHHHHHHHHHHHccCCC---CceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEEECcccc
Confidence 999999999999999998876 4899999999999999999999999777653 1221
Q ss_pred CCCCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhcc
Q 015080 364 RPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 364 ~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
++.+...+..|.+|+++.|||+|++ +++|.+++|+++-++..
T Consensus 301 RPaEV~~Llgdp~KA~~~LGW~~~~-~~~elv~~Mv~~dl~~~ 342 (345)
T COG1089 301 RPAEVDLLLGDPTKAKEKLGWRPEV-SLEELVREMVEADLEAA 342 (345)
T ss_pred CchhhhhhcCCHHHHHHHcCCcccc-CHHHHHHHHHHHHHHHh
Confidence 2334445678999999999999999 99999999999987653
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=261.91 Aligned_cols=272 Identities=15% Similarity=0.175 Sum_probs=207.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|+|||||||||++++++|+++|++|++++|+..+. ..+. ..+++++.+|++|++++.+++ .++|+||
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~----~~l~-----~~~v~~v~~Dl~d~~~l~~al--~g~d~Vi 69 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA----SFLK-----EWGAELVYGDLSLPETLPPSF--KGVTAII 69 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh----hhHh-----hcCCEEEECCCCCHHHHHHHH--CCCCEEE
Confidence 4799999999999999999999999999998764321 1111 146899999999999999999 6899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
|+++.. ..++...+++|+.++.++++++++.+++++|++||..+.. .+..+|..+|..+|.+
T Consensus 70 ~~~~~~-----~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~-------------~~~~~~~~~K~~~e~~ 131 (317)
T CHL00194 70 DASTSR-----PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQ-------------YPYIPLMKLKSDIEQK 131 (317)
T ss_pred ECCCCC-----CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccc-------------cCCChHHHHHHHHHHH
Confidence 998642 1234557788999999999999999999999999954321 1135689999999998
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHH
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~ 310 (413)
++. .+++++++||+.+|+.. +......+....+ +.+. .+++.++|+|++
T Consensus 132 l~~----~~l~~tilRp~~~~~~~-------------------~~~~~~~~~~~~~-~~~~-------~~~~~~~~i~v~ 180 (317)
T CHL00194 132 LKK----SGIPYTIFRLAGFFQGL-------------------ISQYAIPILEKQP-IWIT-------NESTPISYIDTQ 180 (317)
T ss_pred HHH----cCCCeEEEeecHHhhhh-------------------hhhhhhhhccCCc-eEec-------CCCCccCccCHH
Confidence 765 78999999999888631 1111111222223 3333 456678999999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCC--------------C---------
Q 015080 311 DLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPG--------------D--------- 367 (413)
Q Consensus 311 Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~--------------~--------- 367 (413)
|+|++++.++..+.. .+++||+++++.+|+.|+++.+.+.+|++..+...|.+.. .
T Consensus 181 Dva~~~~~~l~~~~~-~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 259 (317)
T CHL00194 181 DAAKFCLKSLSLPET-KNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWNISDRLAFVE 259 (317)
T ss_pred HHHHHHHHHhcCccc-cCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchhhHHHHHHHH
Confidence 999999999986544 3479999999999999999999999999877766553110 0
Q ss_pred ---c-cccccCHHHHHHhcCcccc--cccHHHHHHHHHHHHHh
Q 015080 368 ---Y-AEVYSDPTKIRLELNWTAK--YTNLQESLEIAWRWQKS 404 (413)
Q Consensus 368 ---~-~~~~~d~~k~~~~lG~~p~--~~~~~e~l~~~~~~~~~ 404 (413)
. .....+.+++.+.||+.|. . +++++++++++-.++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~g~~p~~~~-~~~~~~~~~~~~~~~ 301 (317)
T CHL00194 260 ILNTSNNFSSSMAELYKIFKIDPNELI-SLEDYFQEYFERILK 301 (317)
T ss_pred HHhcCCCcCCCHHHHHHHhCCChhhhh-hHHHHHHHHHHHHHH
Confidence 0 1233567788889999983 4 799999998887766
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=262.77 Aligned_cols=275 Identities=25% Similarity=0.313 Sum_probs=234.4
Q ss_pred HHcCCCCCCCCCCCCCCCCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEE
Q 015080 50 LLKQSPTFSSPSPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIY 128 (413)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (413)
++.+.+...........+.+ |+||||||+|-||+++++++++.+. ++++++++..+.......+++..+. .+..++.
T Consensus 231 LLgR~pV~~d~~~i~~~~~g-K~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~-~~~~~~i 308 (588)
T COG1086 231 LLGRPPVALDTELIGAMLTG-KTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPE-LKLRFYI 308 (588)
T ss_pred HhCCCCCCCCHHHHHhHcCC-CEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCC-cceEEEe
Confidence 34444433333333346778 9999999999999999999999976 7889888777777777777776553 6889999
Q ss_pred ccCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCC
Q 015080 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 129 ~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~ 208 (413)
+|+.|.+.+.++++..++|+|||+|+..+.+..+.+|.+.+++|+.||+|+++++.+++++++|++||
T Consensus 309 gdVrD~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iST------------ 376 (588)
T COG1086 309 GDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLIST------------ 376 (588)
T ss_pred cccccHHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEec------------
Confidence 99999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh-C--CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN-S--DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~-~--gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
+...+|.+.||+||+.+|..+.++..+ . +.+++++|+|+|.|.+ |+++|.+.+.+.++.
T Consensus 377 --DKAV~PtNvmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr----------------GSViPlFk~QI~~Gg 438 (588)
T COG1086 377 --DKAVNPTNVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR----------------GSVIPLFKKQIAEGG 438 (588)
T ss_pred --CcccCCchHhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCC----------------CCCHHHHHHHHHcCC
Confidence 335667899999999999999999775 3 4899999999999965 489999999999998
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcC----CCceeEec
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATS----ANIKVIYE 361 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g----~~~~~~~~ 361 (413)
| +++. +++-.|-|+.++|+++.++.+......+ ++|-+-.|+++++.|+++.+.+..| .+.++.+.
T Consensus 439 p-lTvT-------dp~mtRyfMTI~EAv~LVlqA~a~~~gG--eifvldMGepvkI~dLAk~mi~l~g~~~~~dI~I~~~ 508 (588)
T COG1086 439 P-LTVT-------DPDMTRFFMTIPEAVQLVLQAGAIAKGG--EIFVLDMGEPVKIIDLAKAMIELAGQTPPGDIAIKII 508 (588)
T ss_pred C-cccc-------CCCceeEEEEHHHHHHHHHHHHhhcCCC--cEEEEcCCCCeEHHHHHHHHHHHhCCCCCCCCCeEEE
Confidence 7 8876 6888899999999999999999976654 7999999999999999999999997 34455554
Q ss_pred CCCCC
Q 015080 362 PRRPG 366 (413)
Q Consensus 362 ~~~~~ 366 (413)
..+++
T Consensus 509 GlRpG 513 (588)
T COG1086 509 GLRPG 513 (588)
T ss_pred ecCCc
Confidence 44433
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=282.20 Aligned_cols=254 Identities=20% Similarity=0.209 Sum_probs=194.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|+||||+||||++++++|+++|++|++++|..... . ..++.++.+|++|.+++.+++ .++|+||
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~------~------~~~v~~v~gDL~D~~~l~~al--~~vD~VV 66 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS------W------PSSADFIAADIRDATAVESAM--TGADVVA 66 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh------c------ccCceEEEeeCCCHHHHHHHH--hCCCEEE
Confidence 4799999999999999999999999999998753211 0 135788999999999999999 5799999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
|||+.... .+++|+.++.+++++|++.++++||++||.. |.++|.+
T Consensus 67 HlAa~~~~---------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~-------------------------K~aaE~l 112 (854)
T PRK05865 67 HCAWVRGR---------NDHINIDGTANVLKAMAETGTGRIVFTSSGH-------------------------QPRVEQM 112 (854)
T ss_pred ECCCcccc---------hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH-------------------------HHHHHHH
Confidence 99985321 4689999999999999999999999999931 8888987
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHH
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~ 310 (413)
+.+ ++++++++||+++|||+.. .++ ..+.. .+ +...| ++...++|+|++
T Consensus 113 l~~----~gl~~vILRp~~VYGP~~~---------------~~i----~~ll~-~~-v~~~G------~~~~~~dfIhVd 161 (854)
T PRK05865 113 LAD----CGLEWVAVRCALIFGRNVD---------------NWV----QRLFA-LP-VLPAG------YADRVVQVVHSD 161 (854)
T ss_pred HHH----cCCCEEEEEeceEeCCChH---------------HHH----HHHhc-Cc-eeccC------CCCceEeeeeHH
Confidence 754 7899999999999998521 222 22211 11 22222 456678999999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcC---CCceeEecCCC--CCCccccccCHHHHHHhcCcc
Q 015080 311 DLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATS---ANIKVIYEPRR--PGDYAEVYSDPTKIRLELNWT 385 (413)
Q Consensus 311 Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g---~~~~~~~~~~~--~~~~~~~~~d~~k~~~~lG~~ 385 (413)
|+|++++.++++... .+++||+++++.+|+.|+++.+.+... .+......+.. ........+|++|+++.|||+
T Consensus 162 DVA~Ai~~aL~~~~~-~ggvyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~D~sKar~~LGw~ 240 (854)
T PRK05865 162 DAQRLLVRALLDTVI-DSGPVNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAPLMDVTLLRDRWGFQ 240 (854)
T ss_pred HHHHHHHHHHhCCCc-CCCeEEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCccCCHHHHHHHhCCC
Confidence 999999999875432 236999999999999999999887532 11111111000 001123467999999999999
Q ss_pred cccccHHHHHHHHHHHHHhc
Q 015080 386 AKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 386 p~~~~~~e~l~~~~~~~~~~ 405 (413)
|++ +++++|+++++||+.+
T Consensus 241 P~~-sLeeGL~dti~~~r~r 259 (854)
T PRK05865 241 PAW-NAEECLEDFTLAVRGR 259 (854)
T ss_pred CCC-CHHHHHHHHHHHHHhh
Confidence 999 9999999999999875
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=258.23 Aligned_cols=278 Identities=23% Similarity=0.228 Sum_probs=198.8
Q ss_pred EEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEEEc
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMHF 152 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi~~ 152 (413)
||||||+||||++++++|+++|++|++++|+......... .. ..|+.. ..+.+.+ .++|+|||+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---------~~----~~~~~~-~~~~~~~--~~~D~Vvh~ 64 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKW---------EG----YKPWAP-LAESEAL--EGADAVINL 64 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccc---------ee----eecccc-cchhhhc--CCCCEEEEC
Confidence 6999999999999999999999999999986654321110 01 112222 3334455 679999999
Q ss_pred CcccCccC--CcCChHHHHHHHHHHHHHHHHHHHHcCCC--EEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 153 AAVAYVGE--STLDPLKYYHNITSNTLVVLESMARHGVD--TLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 153 Ag~~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
||...... ....+...+++|+.+++++++++++.+++ ++|++||..+|+.....+++|+.+..+.+.|+..+...|
T Consensus 65 a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~~~~~~~~~~~~~~~~e 144 (292)
T TIGR01777 65 AGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEEDSPAGDDFLAELCRDWE 144 (292)
T ss_pred CCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCcccCCCCCChHHHHHHHHH
Confidence 99754321 12234567889999999999999998763 566677777898766667888886666666777777777
Q ss_pred HHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeeccc
Q 015080 229 DIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308 (413)
Q Consensus 229 ~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~ 308 (413)
.....+. +.+++++++||+.+|||+. .....+......... .. .| ++++.++|+|
T Consensus 145 ~~~~~~~-~~~~~~~ilR~~~v~G~~~----------------~~~~~~~~~~~~~~~-~~-~g------~~~~~~~~i~ 199 (292)
T TIGR01777 145 EAAQAAE-DLGTRVVLLRTGIVLGPKG----------------GALAKMLPPFRLGLG-GP-LG------SGRQWFSWIH 199 (292)
T ss_pred HHhhhch-hcCCceEEEeeeeEECCCc----------------chhHHHHHHHhcCcc-cc-cC------CCCcccccEe
Confidence 7666443 4689999999999999863 122222222221111 11 23 6788999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCC----------CccccccCHHHH
Q 015080 309 VNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPG----------DYAEVYSDPTKI 378 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~----------~~~~~~~d~~k~ 378 (413)
++|+|+++..+++.+... ++||+++++++|+.|+++.+.+.+|.+..+. .|.+.. .......+++|+
T Consensus 200 v~Dva~~i~~~l~~~~~~--g~~~~~~~~~~s~~di~~~i~~~~g~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (292)
T TIGR01777 200 IEDLVQLILFALENASIS--GPVNATAPEPVRNKEFAKALARALHRPAFFP-VPAFVLRALLGEMADLLLKGQRVLPEKL 276 (292)
T ss_pred HHHHHHHHHHHhcCcccC--CceEecCCCccCHHHHHHHHHHHhCCCCcCc-CCHHHHHHHhchhhHHHhCCcccccHHH
Confidence 999999999999865443 6999999999999999999999999765432 332110 012445678898
Q ss_pred HHhcCcccccccHHHHH
Q 015080 379 RLELNWTAKYTNLQESL 395 (413)
Q Consensus 379 ~~~lG~~p~~~~~~e~l 395 (413)
+ ++||+|++++++|++
T Consensus 277 ~-~~g~~~~~~~~~~~~ 292 (292)
T TIGR01777 277 L-EAGFQFQYPDLDEAL 292 (292)
T ss_pred H-hcCCeeeCcChhhcC
Confidence 7 699999997788864
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=252.87 Aligned_cols=277 Identities=17% Similarity=0.122 Sum_probs=197.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++++++|+++|++|++++|+... ....+.+..+...+.++.++.+|++|.+++.+++ .++|.|+
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~-~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l--~~~d~v~ 83 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGE-TEIEKEIRGLSCEEERLKVFDVDPLDYHSILDAL--KGCSGLF 83 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchh-hhHHHHHHhcccCCCceEEEEecCCCHHHHHHHH--cCCCEEE
Confidence 799999999999999999999999999998874322 2222223332222346889999999999999999 6899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccceec--CCC---CCCCCCCCCCCCC------CC
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-GVDTLIYSSTCATY--GEP---EKMPITEETPQAP------IN 218 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~iV~~SS~~~~--~~~---~~~~~~e~~~~~~------~~ 218 (413)
|.++.... .....+..+++|+.++.++++++.+. ++++||++||.+++ +.. ...+++|+.+..+ ..
T Consensus 84 ~~~~~~~~--~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 161 (297)
T PLN02583 84 CCFDPPSD--YPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKL 161 (297)
T ss_pred EeCccCCc--ccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhccc
Confidence 98764321 12235678999999999999999886 57899999997654 311 2235666654322 23
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCC
Q 015080 219 PYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTA 298 (413)
Q Consensus 219 ~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 298 (413)
.|+.||..+|.+++.++++.|+++++|||+.||||..... .+ .+ .+. ....
T Consensus 162 ~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~---------------~~----~~-~~~--~~~~------- 212 (297)
T PLN02583 162 WHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQH---------------NP----YL-KGA--AQMY------- 212 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCc---------------hh----hh-cCC--cccC-------
Confidence 7999999999999999887899999999999999974211 01 11 111 1111
Q ss_pred CCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCC-ceeEecCCCCCCccccccCHHH
Q 015080 299 DGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSAN-IKVIYEPRRPGDYAEVYSDPTK 377 (413)
Q Consensus 299 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k 377 (413)
+...++||||+|+|++++.+++.+... +.|+++++....+.++++.+.+.+..- .+..... .........++++|
T Consensus 213 -~~~~~~~v~V~Dva~a~~~al~~~~~~--~r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~k 288 (297)
T PLN02583 213 -ENGVLVTVDVNFLVDAHIRAFEDVSSY--GRYLCFNHIVNTEEDAVKLAQMLSPLIPSPPPYEM-QGSEVYQQRIRNKK 288 (297)
T ss_pred -cccCcceEEHHHHHHHHHHHhcCcccC--CcEEEecCCCccHHHHHHHHHHhCCCCCCCCcccc-cCCCccccccChHH
Confidence 122457999999999999999965543 479887665556788999999987632 2211111 01122345789999
Q ss_pred HHHhcCccc
Q 015080 378 IRLELNWTA 386 (413)
Q Consensus 378 ~~~~lG~~p 386 (413)
++ +||++.
T Consensus 289 ~~-~l~~~~ 296 (297)
T PLN02583 289 LN-KLMEDF 296 (297)
T ss_pred HH-HhCccc
Confidence 97 699874
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=249.55 Aligned_cols=269 Identities=16% Similarity=0.142 Sum_probs=198.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+||||++|+++|+++|++|+... .|+.|.+.+...++..++|+||
T Consensus 10 ~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~---------------------------~~~~~~~~v~~~l~~~~~D~Vi 62 (298)
T PLN02778 10 LKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS---------------------------GRLENRASLEADIDAVKPTHVF 62 (298)
T ss_pred CeEEEECCCCHHHHHHHHHHHhCCCEEEEec---------------------------CccCCHHHHHHHHHhcCCCEEE
Confidence 7899999999999999999999999987521 3456677777777666899999
Q ss_pred EcCcccCccC---CcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCC------CCCCCCCCCCC-CCChh
Q 015080 151 HFAAVAYVGE---STLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPE------KMPITEETPQA-PINPY 220 (413)
Q Consensus 151 ~~Ag~~~~~~---~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~------~~~~~e~~~~~-~~~~Y 220 (413)
|+||....+. +..++...+++|+.++.+++++|++.+++ ++++||.++|+... ..+++|++++. +.++|
T Consensus 63 H~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~-~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~~~s~Y 141 (298)
T PLN02778 63 NAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV-LTNYATGCIFEYDDAHPLGSGIGFKEEDTPNFTGSFY 141 (298)
T ss_pred ECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEecceEeCCCCCCCcccCCCCCcCCCCCCCCCch
Confidence 9999865322 44678889999999999999999999885 56677778886432 22467666554 45899
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCC
Q 015080 221 GKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300 (413)
Q Consensus 221 ~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 300 (413)
+.||.++|.++..+. +..++|++.++|++. .....++..+..+.+ +...+
T Consensus 142 g~sK~~~E~~~~~y~-----~~~~lr~~~~~~~~~----------------~~~~~fi~~~~~~~~-~~~~~-------- 191 (298)
T PLN02778 142 SKTKAMVEELLKNYE-----NVCTLRVRMPISSDL----------------SNPRNFITKITRYEK-VVNIP-------- 191 (298)
T ss_pred HHHHHHHHHHHHHhh-----ccEEeeecccCCccc----------------ccHHHHHHHHHcCCC-eeEcC--------
Confidence 999999999998865 356788877777642 112234556665554 33222
Q ss_pred ceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCcee---EecCCC---CCCccccccC
Q 015080 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKV---IYEPRR---PGDYAEVYSD 374 (413)
Q Consensus 301 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~---~~~~~~---~~~~~~~~~d 374 (413)
.+++|++|++++++.+++.... ++||+++++.+|+.|+++.+++.+|.+.++ ...+.. ........+|
T Consensus 192 ---~s~~yv~D~v~al~~~l~~~~~---g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Ld 265 (298)
T PLN02778 192 ---NSMTILDELLPISIEMAKRNLT---GIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELD 265 (298)
T ss_pred ---CCCEEHHHHHHHHHHHHhCCCC---CeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCcccccc
Confidence 2799999999999999975432 599999999999999999999999965332 111110 0011123699
Q ss_pred HHHHHHhcCcccccccHHHHHHHHHHHHHhc
Q 015080 375 PTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 375 ~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
++|+++.++-.+. ..+++++..++-.+..
T Consensus 266 ~~k~~~~~~~~~~--~~~~~~~~~~~~~~~~ 294 (298)
T PLN02778 266 TTKLKREFPELLP--IKESLIKYVFEPNKKT 294 (298)
T ss_pred HHHHHHhcccccc--hHHHHHHHHHHHHHhh
Confidence 9999988876544 5788888887776544
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=249.38 Aligned_cols=254 Identities=25% Similarity=0.356 Sum_probs=192.1
Q ss_pred EEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCce----EEEEccCCCHHHHHHHhhcCCCc
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRL----QFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
||||||+|.||++|+++|++.+. ++++++++..+.....+.+....+. .++ .++.+|+.|.+.+.+++++.++|
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~-~~v~~~~~~vigDvrd~~~l~~~~~~~~pd 79 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPD-PKVRFEIVPVIGDVRDKERLNRIFEEYKPD 79 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC---TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccc-cCcccccCceeecccCHHHHHHHHhhcCCC
Confidence 79999999999999999999985 7999987665555555555433332 234 34689999999999999888999
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHH
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMA 227 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~ 227 (413)
+|||.|+..+.+..+.++.+.+++|+.||+++++++.+++++++|++||.- ...|.+.||+||+.+
T Consensus 80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDK--------------Av~PtnvmGatKrla 145 (293)
T PF02719_consen 80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDK--------------AVNPTNVMGATKRLA 145 (293)
T ss_dssp EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECG--------------CSS--SHHHHHHHHH
T ss_pred EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc--------------cCCCCcHHHHHHHHH
Confidence 999999999998899999999999999999999999999999999999943 355789999999999
Q ss_pred HHHHHHHHhhC---CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceee
Q 015080 228 EDIILDFSKNS---DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304 (413)
Q Consensus 228 e~~~~~~~~~~---gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 304 (413)
|.++..+.... +.+++++|+|+|.|.. |++++.+.+.+.++.| +++. +++-.|
T Consensus 146 E~l~~~~~~~~~~~~t~f~~VRFGNVlgS~----------------GSVip~F~~Qi~~g~P-lTvT-------~p~mtR 201 (293)
T PF02719_consen 146 EKLVQAANQYSGNSDTKFSSVRFGNVLGSR----------------GSVIPLFKKQIKNGGP-LTVT-------DPDMTR 201 (293)
T ss_dssp HHHHHHHCCTSSSS--EEEEEEE-EETTGT----------------TSCHHHHHHHHHTTSS-EEEC-------ETT-EE
T ss_pred HHHHHHHhhhCCCCCcEEEEEEecceecCC----------------CcHHHHHHHHHHcCCc-ceeC-------CCCcEE
Confidence 99999998765 6899999999999964 4899999999999988 8886 577889
Q ss_pred ecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCC------CceeEecCCCCCC
Q 015080 305 DYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSA------NIKVIYEPRRPGD 367 (413)
Q Consensus 305 ~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~------~~~~~~~~~~~~~ 367 (413)
-|+.++++++.++.++.....+ ++|.+-.|+++++.|+++.+.+..|. +.++.+...++++
T Consensus 202 ffmti~EAv~Lvl~a~~~~~~g--eifvl~mg~~v~I~dlA~~~i~~~g~~~~~~~~i~I~~~GlRpGE 268 (293)
T PF02719_consen 202 FFMTIEEAVQLVLQAAALAKGG--EIFVLDMGEPVKILDLAEAMIELSGLEPGKKPDIPIKFTGLRPGE 268 (293)
T ss_dssp EEE-HHHHHHHHHHHHHH--TT--EEEEE---TCEECCCHHHHHHHHTT-EEEESSSS-EEE----TT-
T ss_pred EEecHHHHHHHHHHHHhhCCCC--cEEEecCCCCcCHHHHHHHHHhhcccccccCCCcceEEcCCCCCc
Confidence 9999999999999999987654 79999999999999999999999974 4556666655554
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-31 Score=263.62 Aligned_cols=267 Identities=19% Similarity=0.184 Sum_probs=196.8
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC---EEEEEecCCCCCchhhhhhhhh------------cCC------CCceE
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY---RVTIVDNLSRGNIGAVKVLQEL------------FPE------PGRLQ 125 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~------------~~~------~~~~~ 125 (413)
..+ |+|||||||||||++|+++|++.+. +|+++.|.........+...++ .+. ..++.
T Consensus 9 ~~~-k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~ 87 (491)
T PLN02996 9 LEN-KTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVT 87 (491)
T ss_pred hCC-CeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEE
Confidence 345 8999999999999999999998643 6889988665443322211111 000 15789
Q ss_pred EEEccCC-------CHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccc
Q 015080 126 FIYADLG-------DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-GVDTLIYSSTC 197 (413)
Q Consensus 126 ~~~~Dl~-------d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~iV~~SS~ 197 (413)
++.+|++ +.+.+++++ .++|+|||+|+.... ..+++..+++|+.|+.++++++++. +++++|++||+
T Consensus 88 ~i~GDl~~~~LGLs~~~~~~~l~--~~vD~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~ 162 (491)
T PLN02996 88 PVPGDISYDDLGVKDSNLREEMW--KEIDIVVNLAATTNF---DERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTA 162 (491)
T ss_pred EEecccCCcCCCCChHHHHHHHH--hCCCEEEECccccCC---cCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeee
Confidence 9999998 445567777 579999999997654 2467889999999999999999986 68899999999
Q ss_pred eecCCCCC----CCCCCCC-----------------------------------------------CCCCCChhHHHHHH
Q 015080 198 ATYGEPEK----MPITEET-----------------------------------------------PQAPINPYGKAKKM 226 (413)
Q Consensus 198 ~~~~~~~~----~~~~e~~-----------------------------------------------~~~~~~~Y~~sK~~ 226 (413)
++||...+ .++.+.. ...+.+.|+.||++
T Consensus 163 ~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~ 242 (491)
T PLN02996 163 YVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAM 242 (491)
T ss_pred EEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHH
Confidence 99986432 1111000 11234679999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeec
Q 015080 227 AEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306 (413)
Q Consensus 227 ~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 306 (413)
+|.++..++ .+++++++||++||||...+..|+.++. .....++..+..+.. ..+.| ++++.+|+
T Consensus 243 aE~lv~~~~--~~lpv~i~RP~~V~G~~~~p~~gwi~~~------~~~~~i~~~~~~g~~-~~~~g------dg~~~~D~ 307 (491)
T PLN02996 243 GEMLLGNFK--ENLPLVIIRPTMITSTYKEPFPGWIEGL------RTIDSVIVGYGKGKL-TCFLA------DPNSVLDV 307 (491)
T ss_pred HHHHHHHhc--CCCCEEEECCCEeccCCcCCCCCcccch------hhHHHHHHHhccceE-eEEec------CCCeecce
Confidence 999998875 3899999999999999876655554431 122334444444443 44556 88999999
Q ss_pred ccHHHHHHHHHHHHHhc--CCCCccEEEecCC--CcccHHHHHHHHHHHcCC
Q 015080 307 IDVNDLVDAHVKALERA--QPKKVGIYNVGTG--KGRSVKEFVEACKKATSA 354 (413)
Q Consensus 307 i~v~Dva~a~~~~~~~~--~~~~~~~yni~~~--~~~s~~e~~~~i~~~~g~ 354 (413)
+||+|+|++++.++... ....+++||++++ .++|+.++++.+.+.++.
T Consensus 308 v~Vddvv~a~l~a~~~~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~ 359 (491)
T PLN02996 308 IPADMVVNAMIVAMAAHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSK 359 (491)
T ss_pred ecccHHHHHHHHHHHHhhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhh
Confidence 99999999999998863 2122469999988 889999999999998873
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-31 Score=274.90 Aligned_cols=312 Identities=19% Similarity=0.193 Sum_probs=220.9
Q ss_pred eEEEEEcCCChHHHHHHHHHH--HCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH------HHHHHHhh
Q 015080 71 THVLVTGGAGYIGSHAALRLL--KDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA------KAVNKFFS 142 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~--~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~------~~~~~~~~ 142 (413)
|+|||||||||||++|+++|+ +.|++|++++|... ........... . ..+++++.+|++|+ +.+.++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~-~~~~~~~~~~~-~-~~~v~~~~~Dl~~~~~~~~~~~~~~l-- 75 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQS-LSRLEALAAYW-G-ADRVVPLVGDLTEPGLGLSEADIAEL-- 75 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcch-HHHHHHHHHhc-C-CCcEEEEecccCCccCCcCHHHHHHh--
Confidence 479999999999999999999 57999999998432 12222221111 1 14689999999994 344444
Q ss_pred cCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC---CCCCCCh
Q 015080 143 ENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET---PQAPINP 219 (413)
Q Consensus 143 ~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~---~~~~~~~ 219 (413)
.++|+||||||..... .......++|+.++.++++++++.+++++|++||..+||.... +.+|+. +..+.++
T Consensus 76 -~~~D~Vih~Aa~~~~~---~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~~-~~~e~~~~~~~~~~~~ 150 (657)
T PRK07201 76 -GDIDHVVHLAAIYDLT---ADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYEG-VFREDDFDEGQGLPTP 150 (657)
T ss_pred -cCCCEEEECceeecCC---CCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCccC-ccccccchhhcCCCCc
Confidence 5899999999975432 3456778999999999999999998899999999999986543 344443 2334578
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCC
Q 015080 220 YGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTAD 299 (413)
Q Consensus 220 Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 299 (413)
|+.||.++|.++++ ..|++++++||+.||||...+.....+. ..++..++..+......+++.+ .
T Consensus 151 Y~~sK~~~E~~~~~---~~g~~~~ilRp~~v~G~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~------~ 215 (657)
T PRK07201 151 YHRTKFEAEKLVRE---ECGLPWRVYRPAVVVGDSRTGEMDKIDG------PYYFFKVLAKLAKLPSWLPMVG------P 215 (657)
T ss_pred hHHHHHHHHHHHHH---cCCCcEEEEcCCeeeecCCCCccccCCc------HHHHHHHHHHhccCCccccccc------C
Confidence 99999999999875 2689999999999999875432111110 0112122222211111122222 4
Q ss_pred CceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCc---eeEecCCCC-----------
Q 015080 300 GTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANI---KVIYEPRRP----------- 365 (413)
Q Consensus 300 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~---~~~~~~~~~----------- 365 (413)
+....+++|++|++++++.++..+.. .+++||+++++++++.|+++.+.+.+|.+. +....|...
T Consensus 216 ~~~~~~~v~vddva~ai~~~~~~~~~-~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~ 294 (657)
T PRK07201 216 DGGRTNIVPVDYVADALDHLMHKDGR-DGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPV 294 (657)
T ss_pred CCCeeeeeeHHHHHHHHHHHhcCcCC-CCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchh
Confidence 55678999999999999999875433 347999999999999999999999999876 433333210
Q ss_pred -----------C--------CccccccCHHHHHHhc-CcccccccHHHHHHHHHHHHHhccCC
Q 015080 366 -----------G--------DYAEVYSDPTKIRLEL-NWTAKYTNLQESLEIAWRWQKSHRGG 408 (413)
Q Consensus 366 -----------~--------~~~~~~~d~~k~~~~l-G~~p~~~~~~e~l~~~~~~~~~~~~~ 408 (413)
. ......+|++++++.| +..+..+.+.+.+...++||.+|.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p~~~~~~~~~~~~~~~~~~~ 357 (657)
T PRK07201 295 RRLRNAVATQLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVPRLASYAPRLWDYWERHLDP 357 (657)
T ss_pred hHHHHHHHHhcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCCChHHHHHHHHHHHHhcCCh
Confidence 0 0013467899999888 33333447999999999999998654
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=243.31 Aligned_cols=242 Identities=20% Similarity=0.202 Sum_probs=188.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCch--hhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcC--CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIG--AVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSEN--AF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--~~ 146 (413)
++|||||||||||++++++|+++|++|++++|+...... ..+.... ...+++++.+|++|++++.++++.. ++
T Consensus 61 ~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~ 137 (390)
T PLN02657 61 VTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKK---ELPGAEVVFGDVTDADSLRKVLFSEGDPV 137 (390)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhh---hcCCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence 899999999999999999999999999999986543221 1111111 1246899999999999999998653 69
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHH
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKM 226 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~ 226 (413)
|+||||+|.... .....+++|+.++.++++++++.++++||++||.++++ |...|..+|..
T Consensus 138 D~Vi~~aa~~~~-----~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~--------------p~~~~~~sK~~ 198 (390)
T PLN02657 138 DVVVSCLASRTG-----GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQK--------------PLLEFQRAKLK 198 (390)
T ss_pred cEEEECCccCCC-----CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccC--------------cchHHHHHHHH
Confidence 999999985321 12345788999999999999999999999999987753 24568999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceee-e
Q 015080 227 AEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR-D 305 (413)
Q Consensus 227 ~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~-~ 305 (413)
.|..+.. .+.++++++|||+.+||+. ...+..+..+.+ +.+.| ++...+ +
T Consensus 199 ~E~~l~~--~~~gl~~tIlRp~~~~~~~--------------------~~~~~~~~~g~~-~~~~G------dG~~~~~~ 249 (390)
T PLN02657 199 FEAELQA--LDSDFTYSIVRPTAFFKSL--------------------GGQVEIVKDGGP-YVMFG------DGKLCACK 249 (390)
T ss_pred HHHHHHh--ccCCCCEEEEccHHHhccc--------------------HHHHHhhccCCc-eEEec------CCcccccC
Confidence 9998865 3478999999999999742 112344555555 55666 666544 6
Q ss_pred cccHHHHHHHHHHHHHhcCCCCccEEEecCC-CcccHHHHHHHHHHHcCCCceeEecCCC
Q 015080 306 YIDVNDLVDAHVKALERAQPKKVGIYNVGTG-KGRSVKEFVEACKKATSANIKVIYEPRR 364 (413)
Q Consensus 306 ~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~-~~~s~~e~~~~i~~~~g~~~~~~~~~~~ 364 (413)
+||++|+|++++.++..+.. .+++||++++ +.+|+.|+++.+.+.+|++.++...|.+
T Consensus 250 ~I~v~DlA~~i~~~~~~~~~-~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp~~ 308 (390)
T PLN02657 250 PISEADLASFIADCVLDESK-INKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVPIQ 308 (390)
T ss_pred ceeHHHHHHHHHHHHhCccc-cCCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcCHH
Confidence 89999999999999975443 2379999886 5899999999999999998887776654
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-29 Score=218.71 Aligned_cols=282 Identities=22% Similarity=0.236 Sum_probs=206.3
Q ss_pred EEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEEEc
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMHF 152 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi~~ 152 (413)
|+||||||+||++|+.+|.+.||+|+++.|+++..+.. ... .+..-+.+.+..+ .++|+|||+
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~-------------~~~---~v~~~~~~~~~~~-~~~DavINL 63 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQN-------------LHP---NVTLWEGLADALT-LGIDAVINL 63 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhh-------------cCc---cccccchhhhccc-CCCCEEEEC
Confidence 68999999999999999999999999999877654421 111 1112233344442 279999999
Q ss_pred CcccCccC--CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 153 AAVAYVGE--STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 153 Ag~~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
||...... +.+..+..++.-+..|+.|.++..+. +++.+|.-|.+..||......++|++++ +...-+..-...|
T Consensus 64 AG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~-g~~Fla~lc~~WE 142 (297)
T COG1090 64 AGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPP-GDDFLAQLCQDWE 142 (297)
T ss_pred CCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCCCC-CCChHHHHHHHHH
Confidence 99765544 33345668888889999999999854 5667788888889999988889998443 3455566666777
Q ss_pred HHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeeccc
Q 015080 229 DIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308 (413)
Q Consensus 229 ~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~ 308 (413)
..+..... .|.+++.+|.|.|.|+.- .+++.+....+-+. ..+.++|.++++|||
T Consensus 143 ~~a~~a~~-~gtRvvllRtGvVLs~~G----------------GaL~~m~~~fk~gl--------GG~~GsGrQ~~SWIh 197 (297)
T COG1090 143 EEALQAQQ-LGTRVVLLRTGVVLSPDG----------------GALGKMLPLFKLGL--------GGKLGSGRQWFSWIH 197 (297)
T ss_pred HHHhhhhh-cCceEEEEEEEEEecCCC----------------cchhhhcchhhhcc--------CCccCCCCceeeeee
Confidence 77766543 699999999999999752 34444333332221 112339999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCC----CCCCccccccCHH-----HHH
Q 015080 309 VNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR----RPGDYAEVYSDPT-----KIR 379 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~----~~~~~~~~~~d~~-----k~~ 379 (413)
++|+++++.+++++.... +.||++++.|++..++.+++.+.++++......+. -.++.....++.. |+.
T Consensus 198 ieD~v~~I~fll~~~~ls--Gp~N~taP~PV~~~~F~~al~r~l~RP~~~~vP~~~~rl~LGe~a~~lL~gQrvlP~kl~ 275 (297)
T COG1090 198 IEDLVNAILFLLENEQLS--GPFNLTAPNPVRNKEFAHALGRALHRPAILPVPSFALRLLLGEMADLLLGGQRVLPKKLE 275 (297)
T ss_pred HHHHHHHHHHHHhCcCCC--CcccccCCCcCcHHHHHHHHHHHhCCCccccCcHHHHHHHhhhhHHHHhccchhhHHHHH
Confidence 999999999999986654 59999999999999999999999998776543221 1222233344444 443
Q ss_pred HhcCcccccccHHHHHHHHHH
Q 015080 380 LELNWTAKYTNLQESLEIAWR 400 (413)
Q Consensus 380 ~~lG~~p~~~~~~e~l~~~~~ 400 (413)
..||+++|++++++|.+.+.
T Consensus 276 -~aGF~F~y~dl~~AL~~il~ 295 (297)
T COG1090 276 -AAGFQFQYPDLEEALADILK 295 (297)
T ss_pred -HCCCeeecCCHHHHHHHHHh
Confidence 57999999999999998764
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=237.01 Aligned_cols=260 Identities=20% Similarity=0.225 Sum_probs=186.9
Q ss_pred EEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCch---hhhhhhhhcCC----C-CceEEEEccCCCH------H
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIG---AVKVLQELFPE----P-GRLQFIYADLGDA------K 135 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~---~~~~~~~~~~~----~-~~~~~~~~Dl~d~------~ 135 (413)
+|||||||||||++|+++|+++| ++|+++.|....... ..+.+...... . .++.++.+|++++ +
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 48999999999999999999999 679999886543221 11222111100 0 4789999999864 4
Q ss_pred HHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC-
Q 015080 136 AVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ- 214 (413)
Q Consensus 136 ~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~- 214 (413)
....+. .++|+|||||+.... ........+.|+.++.++++++.+.+.+++|++||.++|+.....+..|+++.
T Consensus 81 ~~~~~~--~~~d~vih~a~~~~~---~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~ 155 (367)
T TIGR01746 81 EWERLA--ENVDTIVHNGALVNW---VYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIV 155 (367)
T ss_pred HHHHHH--hhCCEEEeCCcEecc---CCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCcccccccc
Confidence 555655 679999999997643 23456678899999999999999988888999999999976433333333321
Q ss_pred ----CCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 215 ----APINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 215 ----~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+.+.|+.||+++|.+++.+.+. |++++++|||.++|+...+.... ..++..++........ ++
T Consensus 156 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~---------~~~~~~~~~~~~~~~~-~p- 223 (367)
T TIGR01746 156 TPPPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYTGAINS---------SDILWRMVKGCLALGA-YP- 223 (367)
T ss_pred ccccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCCCCCCc---------hhHHHHHHHHHHHhCC-CC-
Confidence 23568999999999999887664 99999999999999854322110 0233333333222111 11
Q ss_pred ecccccCCCCc-eeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCcccHHHHHHHHHHHcCCCce
Q 015080 291 KGTDYSTADGT-CVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGRSVKEFVEACKKATSANIK 357 (413)
Q Consensus 291 ~g~~~~~~~~~-~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~ 357 (413)
... ...+|+|++|++++++.++..... ..+++||+++++++++.|+++.+.+ +|.+.+
T Consensus 224 --------~~~~~~~~~~~vddva~ai~~~~~~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~ 283 (367)
T TIGR01746 224 --------DSPELTEDLTPVDYVARAIVALSSQPAASAGGPVFHVVNPEPVSLDEFLEWLER-AGYNLK 283 (367)
T ss_pred --------CCCccccCcccHHHHHHHHHHHHhCCCcccCCceEEecCCCCCCHHHHHHHHHH-cCCCCC
Confidence 222 357899999999999999886543 1147999999999999999999999 887765
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=248.08 Aligned_cols=262 Identities=17% Similarity=0.127 Sum_probs=194.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+||||++|++.|.++|++|... .+|++|.+.+.+.+.+.++|+||
T Consensus 381 mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~---------------------------~~~l~d~~~v~~~i~~~~pd~Vi 433 (668)
T PLN02260 381 LKFLIYGRTGWIGGLLGKLCEKQGIAYEYG---------------------------KGRLEDRSSLLADIRNVKPTHVF 433 (668)
T ss_pred ceEEEECCCchHHHHHHHHHHhCCCeEEee---------------------------ccccccHHHHHHHHHhhCCCEEE
Confidence 789999999999999999999999988421 14688999999888777899999
Q ss_pred EcCcccCc---cCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCC------CCCCCCCCCCCCC-CChh
Q 015080 151 HFAAVAYV---GESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEP------EKMPITEETPQAP-INPY 220 (413)
Q Consensus 151 ~~Ag~~~~---~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~------~~~~~~e~~~~~~-~~~Y 220 (413)
|+|+.... +.++.+++..+++|+.++.+++++|++.++ ++|++||.++|+.. ...++.|++++.| .++|
T Consensus 434 h~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~-~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~~~~Y 512 (668)
T PLN02260 434 NAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL-LMMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFTGSFY 512 (668)
T ss_pred ECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC-eEEEEcccceecCCcccccccCCCCCcCCCCCCCCChh
Confidence 99998643 234567889999999999999999999988 57888888888642 1346788776654 5899
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCC
Q 015080 221 GKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300 (413)
Q Consensus 221 ~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 300 (413)
+.||+++|.+++.+. +..++|+..+||....+ .+.|+..++.. ...+.+.
T Consensus 513 g~sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~~------------~~nfv~~~~~~----~~~~~vp--------- 562 (668)
T PLN02260 513 SKTKAMVEELLREYD-----NVCTLRVRMPISSDLSN------------PRNFITKISRY----NKVVNIP--------- 562 (668)
T ss_pred hHHHHHHHHHHHhhh-----hheEEEEEEecccCCCC------------ccHHHHHHhcc----ceeeccC---------
Confidence 999999999998863 45677888888643210 01444444332 2213221
Q ss_pred ceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEe-----cC--CCCCCcccccc
Q 015080 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY-----EP--RRPGDYAEVYS 373 (413)
Q Consensus 301 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~-----~~--~~~~~~~~~~~ 373 (413)
.+..+++|++.+++.+++... +++||+++++.+|+.|+++.|.+.++....+.. .+ .....+.. .+
T Consensus 563 ---~~~~~~~~~~~~~~~l~~~~~---~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~rp~~-~l 635 (668)
T PLN02260 563 ---NSMTVLDELLPISIEMAKRNL---RGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPRSNN-EM 635 (668)
T ss_pred ---CCceehhhHHHHHHHHHHhCC---CceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCCccc-cc
Confidence 245778899999888887433 269999999999999999999998852211111 11 11223344 89
Q ss_pred CHHHHHHhcCcccccccHHHHHHHHHH
Q 015080 374 DPTKIRLELNWTAKYTNLQESLEIAWR 400 (413)
Q Consensus 374 d~~k~~~~lG~~p~~~~~~e~l~~~~~ 400 (413)
|++|+++.+|. +. +|+|+|++++.
T Consensus 636 ~~~k~~~~~~~-~~--~~~~~l~~~~~ 659 (668)
T PLN02260 636 DASKLKKEFPE-LL--SIKESLIKYVF 659 (668)
T ss_pred cHHHHHHhCcc-cc--chHHHHHHHHh
Confidence 99999988898 65 79999998875
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=230.84 Aligned_cols=265 Identities=13% Similarity=0.175 Sum_probs=191.9
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCC---EEEEEecCCCCCchhhhhhhhh------------cCC------CCceEE
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSY---RVTIVDNLSRGNIGAVKVLQEL------------FPE------PGRLQF 126 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~------------~~~------~~~~~~ 126 (413)
.+ |+|||||||||||.+|+++|++.+. +|+++.|.........+..+++ .+. ..++.+
T Consensus 118 ~~-k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~ 196 (605)
T PLN02503 118 RG-KNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP 196 (605)
T ss_pred cC-CEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence 45 9999999999999999999998754 6788888655433222221121 111 247899
Q ss_pred EEccCCCH------HHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEecccee
Q 015080 127 IYADLGDA------KAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-GVDTLIYSSTCAT 199 (413)
Q Consensus 127 ~~~Dl~d~------~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~iV~~SS~~~ 199 (413)
+.+|++++ +..+.+. ..+|+|||+|+.... ..+++..+++|+.|+.++++.+++. +.+++||+||+++
T Consensus 197 v~GDl~d~~LGLs~~~~~~L~--~~vDiVIH~AA~v~f---~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayV 271 (605)
T PLN02503 197 VVGNVCESNLGLEPDLADEIA--KEVDVIINSAANTTF---DERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYV 271 (605)
T ss_pred EEeeCCCcccCCCHHHHHHHH--hcCCEEEECcccccc---ccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCcee
Confidence 99999997 3445555 469999999997653 3467889999999999999999886 4789999999999
Q ss_pred cCCCCCCCCCCCCC-----------------------------------------------------------CCCCChh
Q 015080 200 YGEPEKMPITEETP-----------------------------------------------------------QAPINPY 220 (413)
Q Consensus 200 ~~~~~~~~~~e~~~-----------------------------------------------------------~~~~~~Y 220 (413)
||...+ .+.|... ....+.|
T Consensus 272 yG~~~G-~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtY 350 (605)
T PLN02503 272 NGQRQG-RIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTY 350 (605)
T ss_pred ecCCCC-eeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChH
Confidence 987532 1222110 1113789
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCC
Q 015080 221 GKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300 (413)
Q Consensus 221 ~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 300 (413)
..||+.+|.++++.. .+++++++||+.|.+...++..||.++.. ...+.+....++... .+.+ ++
T Consensus 351 t~TK~lAE~lV~~~~--~~LPv~IvRPsiV~st~~eP~pGw~d~~~-----~~~p~~~~~g~G~lr--~~~~------~~ 415 (605)
T PLN02503 351 VFTKAMGEMVINSMR--GDIPVVIIRPSVIESTWKDPFPGWMEGNR-----MMDPIVLYYGKGQLT--GFLA------DP 415 (605)
T ss_pred HHHHHHHHHHHHHhc--CCCCEEEEcCCEecccccCCccccccCcc-----ccchhhhheecccee--EEEe------CC
Confidence 999999999998754 47999999999998877777777776532 122222222222111 1334 78
Q ss_pred ceeeecccHHHHHHHHHHHHHh-cC--CCCccEEEecCC--CcccHHHHHHHHHHHcCC
Q 015080 301 TCVRDYIDVNDLVDAHVKALER-AQ--PKKVGIYNVGTG--KGRSVKEFVEACKKATSA 354 (413)
Q Consensus 301 ~~~~~~i~v~Dva~a~~~~~~~-~~--~~~~~~yni~~~--~~~s~~e~~~~i~~~~g~ 354 (413)
+...|+|+||.++++++.++.. .. ...+.+||++++ .++++.++.+.+.+.+..
T Consensus 416 ~~~~DiVPVD~vvna~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~ 474 (605)
T PLN02503 416 NGVLDVVPADMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKS 474 (605)
T ss_pred CeeEeEEeecHHHHHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhh
Confidence 8999999999999999998542 11 113479999988 889999999999987653
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=202.77 Aligned_cols=213 Identities=18% Similarity=0.154 Sum_probs=159.2
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
.+ |.++|||||++||.++|+.|++.|++|++++|...+.++++..+.+ ..+.++..|++|.++++.+++.
T Consensus 5 ~~-kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~-----~~~~~~~~DVtD~~~~~~~i~~~~~~ 78 (246)
T COG4221 5 KG-KVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA-----GAALALALDVTDRAAVEAAIEALPEE 78 (246)
T ss_pred CC-cEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc-----CceEEEeeccCCHHHHHHHHHHHHHh
Confidence 35 8999999999999999999999999999998755444444433321 4689999999999997777754
Q ss_pred -CCCcEEEEcCcccCccC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|++|||||.+...+ ..++++..+++|+.| ++.+||.|.+++.++||++||.+.. .+.
T Consensus 79 ~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~-----------~~y 147 (246)
T COG4221 79 FGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGR-----------YPY 147 (246)
T ss_pred hCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccccc-----------ccC
Confidence 67999999999875533 234556678999999 6779999999988999999997642 233
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
...+.|++||++...+.+.++++ .+++++.+.||.|-...-+.. ++-.. ...+.+ +
T Consensus 148 ~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v-------------~~~g~-~~~~~~----~--- 206 (246)
T COG4221 148 PGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTV-------------RFEGD-DERADK----V--- 206 (246)
T ss_pred CCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccc-------------cCCch-hhhHHH----H---
Confidence 34678999999999999999988 689999999999855321000 00000 000000 0
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcCCCC
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKK 327 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~ 327 (413)
......+..+|+|+++.+++..+...+
T Consensus 207 ---------y~~~~~l~p~dIA~~V~~~~~~P~~vn 233 (246)
T COG4221 207 ---------YKGGTALTPEDIAEAVLFAATQPQHVN 233 (246)
T ss_pred ---------hccCCCCCHHHHHHHHHHHHhCCCccc
Confidence 012356899999999999999877653
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-26 Score=211.04 Aligned_cols=243 Identities=15% Similarity=0.121 Sum_probs=173.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+||||++++++|+++|++|++++|+.. ... .+.+.. +.++.++.+|++|.+++.+++++ .+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~---~~~-~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPD---ALD-DLKARY--GDRLWVLQLDVTDSAAVRAVVDRAFAALGR 76 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHH---HHH-HHHHhc--cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 78999999999999999999999999999886432 222 222211 24688999999999999887754 56
Q ss_pred CcEEEEcCcccCccCCc----CChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||........ +..+..+++|+.++.++++++ ++.+.++||++||..... +..+.
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~~~~ 145 (276)
T PRK06482 77 IDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQI-----------AYPGF 145 (276)
T ss_pred CCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCccccc-----------CCCCC
Confidence 89999999986544322 234557889999988888876 556778999999965432 12346
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecce---ecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNV---IGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
++|+.||++.|.+++.++.+ +|++++++|||.+ ||++..... .... ........+......+. +
T Consensus 146 ~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~--~--- 215 (276)
T PRK06482 146 SLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGA-PLDA----YDDTPVGDLRRALADGS--F--- 215 (276)
T ss_pred chhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccC-CCcc----ccchhhHHHHHHHhhcc--C---
Confidence 78999999999999999876 6999999999988 554321100 0000 00011222222222211 1
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCC
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSA 354 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~ 354 (413)
.-+.+++|++++++.++..+... ..||+++++..+..++++.+.+.++.
T Consensus 216 ------------~~~~d~~~~~~a~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~ 264 (276)
T PRK06482 216 ------------AIPGDPQKMVQAMIASADQTPAP--RRLTLGSDAYASIRAALSERLAALEA 264 (276)
T ss_pred ------------CCCCCHHHHHHHHHHHHcCCCCC--eEEecChHHHHHHHHHHHHHHHHHHH
Confidence 11367899999999999865443 58999999888998888888877753
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=207.31 Aligned_cols=237 Identities=18% Similarity=0.125 Sum_probs=167.2
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
++ |++|||||+|+||++++++|+++|++|++++|+....++..+.+.+. +..+.++++|++|.+++.++++.
T Consensus 6 ~~-~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 6 NG-KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA---GGKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred CC-CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc---CceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35 89999999999999999999999999999988665444444444332 35688899999999999887764
Q ss_pred -CCCcEEEEcCcccCccCC----cCChHHHHHHHHHH----HHHHHHHH-HHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSN----TLVVLESM-ARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~----~~~ll~~~-~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||....... .+..+..+++|+.+ ++++++.+ ++.+.++||++||...+..
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~~----------- 150 (262)
T PRK13394 82 FGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEA----------- 150 (262)
T ss_pred cCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcCC-----------
Confidence 469999999998644321 23345567799999 77788888 6667889999999654422
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
..+...|+.+|++.+.+++.++.+ .+++++++||+.+++|........... ..+.........+
T Consensus 151 ~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------- 217 (262)
T PRK13394 151 SPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAK----ELGISEEEVVKKV--------- 217 (262)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhh----ccCCChHHHHHHH---------
Confidence 223568999999999999998877 589999999999999752210000000 0000000011111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKG 338 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~ 338 (413)
.+ .+...++|++++|++++++.++..... ..++.|+++++..
T Consensus 218 ~~------~~~~~~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~g~~ 260 (262)
T PRK13394 218 ML------GKTVDGVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSHGWF 260 (262)
T ss_pred Hh------cCCCCCCCCCHHHHHHHHHHHcCccccCCcCCEEeeCCcee
Confidence 11 233456899999999999999975432 2357899977643
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=224.82 Aligned_cols=238 Identities=18% Similarity=0.263 Sum_probs=170.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+||||++++++|+++|++|++++|..... . ..+++++.+|++|+. +.+++ .++|+||
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~-----------~-~~~ve~v~~Dl~d~~-l~~al--~~~D~VI 65 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA-----------L-DPRVDYVCASLRNPV-LQELA--GEADAVI 65 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc-----------c-cCCceEEEccCCCHH-HHHHh--cCCCEEE
Confidence 4799999999999999999999999999998743211 0 146889999999985 67777 5799999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
|+|+.... . ...+|+.++.+++++|++.++ ++||+||. +|.. ..|. .+|.+
T Consensus 66 HLAa~~~~-----~---~~~vNv~Gt~nLleAA~~~Gv-RiV~~SS~--~G~~--------------~~~~----~aE~l 116 (699)
T PRK12320 66 HLAPVDTS-----A---PGGVGITGLAHVANAAARAGA-RLLFVSQA--AGRP--------------ELYR----QAETL 116 (699)
T ss_pred EcCccCcc-----c---hhhHHHHHHHHHHHHHHHcCC-eEEEEECC--CCCC--------------cccc----HHHHH
Confidence 99986321 1 125899999999999999987 89999985 3321 1122 35665
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHH
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~ 310 (413)
+.. ++++++++|++++|||+..... +.++..++.....++ ...++|++
T Consensus 117 l~~----~~~p~~ILR~~nVYGp~~~~~~-----------~r~I~~~l~~~~~~~-----------------pI~vIyVd 164 (699)
T PRK12320 117 VST----GWAPSLVIRIAPPVGRQLDWMV-----------CRTVATLLRSKVSAR-----------------PIRVLHLD 164 (699)
T ss_pred HHh----cCCCEEEEeCceecCCCCcccH-----------hHHHHHHHHHHHcCC-----------------ceEEEEHH
Confidence 544 6789999999999998643110 134444443332222 23468999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCccccccc
Q 015080 311 DLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTN 390 (413)
Q Consensus 311 Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~ 390 (413)
|++++++.+++... .++|||++++.+|+.|+++.+..... ..... .........-|.+..+..++|.|+. +
T Consensus 165 Dvv~alv~al~~~~---~GiyNIG~~~~~Si~el~~~i~~~~p-~~~~~----~~~~~~~~~pdi~~a~~~~~w~~~~-~ 235 (699)
T PRK12320 165 DLVRFLVLALNTDR---NGVVDLATPDTTNVVTAWRLLRSVDP-HLRTR----RVRSWEQLIPEVDIAAVQEDWNFEF-G 235 (699)
T ss_pred HHHHHHHHHHhCCC---CCEEEEeCCCeeEHHHHHHHHHHhCC-Ccccc----ccccHHHhCCCCchhhhhcCCCCcc-h
Confidence 99999999998533 24999999999999999998877621 11111 1122334556777777789999987 6
Q ss_pred HHH
Q 015080 391 LQE 393 (413)
Q Consensus 391 ~~e 393 (413)
|+.
T Consensus 236 ~~~ 238 (699)
T PRK12320 236 WQA 238 (699)
T ss_pred HHH
Confidence 654
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=201.51 Aligned_cols=207 Identities=19% Similarity=0.165 Sum_probs=163.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
++++|||||++||.++|++|+++|++|+++.|+..+.+++++.+.... +-.++++.+|+++++++.++.++ ..
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~--~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~ 84 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT--GVEVEVIPADLSDPEALERLEDELKERGGP 84 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh--CceEEEEECcCCChhHHHHHHHHHHhcCCc
Confidence 899999999999999999999999999999887777676666666543 35788999999999998887754 47
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|++|||||...... .++.....+++|+.+ |+.+++.|.+++.++||+++|.+.|-..+. .
T Consensus 85 IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~p~-----------~ 153 (265)
T COG0300 85 IDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPTPY-----------M 153 (265)
T ss_pred ccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCCcc-----------h
Confidence 999999999876654 334455688999998 778899999998899999999888743333 6
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
..|++||+..-.+.+.++.| .|+.|+.|.||.+...... . .... ..
T Consensus 154 avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~------------------------~-~~~~-~~----- 202 (265)
T COG0300 154 AVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFD------------------------A-KGSD-VY----- 202 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCcccccccc------------------------c-cccc-cc-----
Confidence 78999999999999999888 6899999999998875311 0 0000 00
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhcCC
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQP 325 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 325 (413)
......-++..+|+|++.+.++.+...
T Consensus 203 ----~~~~~~~~~~~~~va~~~~~~l~~~k~ 229 (265)
T COG0300 203 ----LLSPGELVLSPEDVAEAALKALEKGKR 229 (265)
T ss_pred ----cccchhhccCHHHHHHHHHHHHhcCCc
Confidence 001123568899999999999996554
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=191.98 Aligned_cols=305 Identities=23% Similarity=0.284 Sum_probs=236.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCC-----CCceEEEEccCCCHHHHHHHhhcCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE-----PGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
|.+||||-||.=|+.|++.|+.+|++|..+-|.+.+-+ ...+..+..+ +.......+|++|...+.+++...+
T Consensus 29 kvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFN--T~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ik 106 (376)
T KOG1372|consen 29 KVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFN--TARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIK 106 (376)
T ss_pred eEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccc--hhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccC
Confidence 78999999999999999999999999998876444322 2333444332 3567778899999999999998889
Q ss_pred CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC---CCEEEEeccceecCCCCCCCCCCCCCCCCCChhHH
Q 015080 146 FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG---VDTLIYSSTCATYGEPEKMPITEETPQAPINPYGK 222 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~ 222 (413)
++-|+|+|+..+...+.+-++-.-++...|+..+|++.+.++ .-++-..||+..||.....|..|..|..|.++|+.
T Consensus 107 PtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~TPFyPRSPYa~ 186 (376)
T KOG1372|consen 107 PTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSETTPFYPRSPYAA 186 (376)
T ss_pred chhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccCCCCCCCChhHH
Confidence 999999999988877777778888888999999999998874 23888899999999998889999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHh----ccccceeEecccccCC
Q 015080 223 AKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAAR----GIIAGLKVKGTDYSTA 298 (413)
Q Consensus 223 sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~g~~~~~~ 298 (413)
+|..+-.++..+++.+++-.+ -|+.|... ++..|+. .+...+-+.+. +.+..+.+ |
T Consensus 187 aKmy~~WivvNyREAYnmfAc---NGILFNHE-SPRRGen---------FVTRKItRsvakI~~gqqe~~~L-G------ 246 (376)
T KOG1372|consen 187 AKMYGYWIVVNYREAYNMFAC---NGILFNHE-SPRRGEN---------FVTRKITRSVAKISLGQQEKIEL-G------ 246 (376)
T ss_pred hhhhheEEEEEhHHhhcceee---ccEeecCC-CCccccc---------hhhHHHHHHHHHhhhcceeeEEe-c------
Confidence 999998888777777776543 36666542 2222221 23333333222 22222332 3
Q ss_pred CCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEe------------------
Q 015080 299 DGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY------------------ 360 (413)
Q Consensus 299 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~------------------ 360 (413)
+-...+||-|..|.++|++.+++++.+. .|.|.+++..|++|+++.....+|....+.-
T Consensus 247 NL~a~RDWGhA~dYVEAMW~mLQ~d~Pd---DfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g~v~V~v 323 (376)
T KOG1372|consen 247 NLSALRDWGHAGDYVEAMWLMLQQDSPD---DFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDGVVRVKV 323 (376)
T ss_pred chhhhcccchhHHHHHHHHHHHhcCCCC---ceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCceEEEEe
Confidence 7788999999999999999999998875 7999999999999999999999886554431
Q ss_pred cC--CCCCCccccccCHHHHHHhcCcccccccHHHHHHHHHHH
Q 015080 361 EP--RRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401 (413)
Q Consensus 361 ~~--~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~ 401 (413)
.| .++.+...+.-|.+|+++.|||+|+. .+.+-+++|+..
T Consensus 324 ~~kYyRPtEVd~LqGdasKAk~~LgW~pkv-~f~eLVkeMv~~ 365 (376)
T KOG1372|consen 324 DPKYYRPTEVDTLQGDASKAKKTLGWKPKV-TFPELVKEMVAS 365 (376)
T ss_pred cccccCcchhhhhcCChHHHHHhhCCCCcc-CHHHHHHHHHHh
Confidence 11 12333445667999999999999999 899999998854
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=203.93 Aligned_cols=176 Identities=19% Similarity=0.190 Sum_probs=142.7
Q ss_pred CCCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 65 QHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 65 ~~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
++..+ |+|+|||||+|||.++|.+|+++|.+++.+.|..++.+...+.+++..+.. ++.+++||++|.+++.++++.
T Consensus 8 e~~~~-kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~-~v~~~~~Dvs~~~~~~~~~~~~ 85 (282)
T KOG1205|consen 8 ERLAG-KVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLE-KVLVLQLDVSDEESVKKFVEWA 85 (282)
T ss_pred HHhCC-CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcC-ccEEEeCccCCHHHHHHHHHHH
Confidence 35667 999999999999999999999999999999999999888878888776653 799999999999999988744
Q ss_pred ----CCCcEEEEcCcccCccCCc----CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
+++|++|||||+....... ++....+++|+.| |+.+++.|++++-|+||.+||.+.+-..+
T Consensus 86 ~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P------- 158 (282)
T KOG1205|consen 86 IRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLP------- 158 (282)
T ss_pred HHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCC-------
Confidence 7899999999987643322 2223378999999 77888999998878999999988763322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhC---CCcEE-EEeecceecC
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKNS---DMAVM-ILRYFNVIGS 253 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~-~lrp~~v~G~ 253 (413)
....|++||++.+.+.+.++.|. +..+. ++.||.|=..
T Consensus 159 ----~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V~Te 200 (282)
T KOG1205|consen 159 ----FRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPIETE 200 (282)
T ss_pred ----cccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCceeec
Confidence 24589999999999999999993 22222 5778877643
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=199.88 Aligned_cols=227 Identities=20% Similarity=0.184 Sum_probs=160.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC-CchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG-NIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
++||||||+||||++++++|+++|++|++++|.... .+...+.+... .+..+.++.+|++|.+++.+++++ .
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNAL--RPGSAAALQADLLDPDALPELVAACVAAFG 84 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhh--cCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 789999999999999999999999999999874322 11122222221 124688899999999999988865 4
Q ss_pred CCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHc---CCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARH---GVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
++|+||||||...... ..++.+..+++|+.++.++++++.+. ..+.+++++|.. +..+..+.
T Consensus 85 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 153 (249)
T PRK09135 85 RLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIH-----------AERPLKGY 153 (249)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChh-----------hcCCCCCc
Confidence 7899999999754322 22335668889999999999988642 235677776632 22355668
Q ss_pred ChhHHHHHHHHHHHHHHHhhC--CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccc
Q 015080 218 NPYGKAKKMAEDIILDFSKNS--DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDY 295 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~~--gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 295 (413)
.+|+.||+++|.+++.++.+. +++++++||+.++||.... .+............+ +.
T Consensus 154 ~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~--------------~~~~~~~~~~~~~~~-~~------ 212 (249)
T PRK09135 154 PVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGN--------------SFDEEARQAILARTP-LK------ 212 (249)
T ss_pred hhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccccc--------------cCCHHHHHHHHhcCC-cC------
Confidence 899999999999999998874 6999999999999986421 122222222222211 11
Q ss_pred cCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCccc
Q 015080 296 STADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRS 340 (413)
Q Consensus 296 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s 340 (413)
.+.+++|+|+++..++.......+++||++++..++
T Consensus 213 ---------~~~~~~d~a~~~~~~~~~~~~~~g~~~~i~~g~~~~ 248 (249)
T PRK09135 213 ---------RIGTPEDIAEAVRFLLADASFITGQILAVDGGRSLT 248 (249)
T ss_pred ---------CCcCHHHHHHHHHHHcCccccccCcEEEECCCeecc
Confidence 123589999999776654332345799999887654
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=192.92 Aligned_cols=206 Identities=17% Similarity=0.205 Sum_probs=167.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
+..| ++||||||++++|+++|.+|+++|+++++.|.+....++..+.+++. +.+..+.||++|.+++.+..++
T Consensus 35 ~v~g-~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~----g~~~~y~cdis~~eei~~~a~~Vk 109 (300)
T KOG1201|consen 35 SVSG-EIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI----GEAKAYTCDISDREEIYRLAKKVK 109 (300)
T ss_pred hccC-CEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc----CceeEEEecCCCHHHHHHHHHHHH
Confidence 4567 99999999999999999999999999999999999988888888776 3799999999999999887765
Q ss_pred ---CCCcEEEEcCcccCccCCcC----ChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGESTL----DPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~~~----~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
+++|+||||||+.......+ .-+..+++|+.+ +++++|.|.+.+.++||.++|++.+-...+
T Consensus 110 ~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~~g------- 182 (300)
T KOG1201|consen 110 KEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGPAG------- 182 (300)
T ss_pred HhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCCcc-------
Confidence 78999999999976654332 234478899998 888999999998899999999887654443
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh------CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN------SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~------~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
..+|++||+++..+.+++..| .|++++.+.|+.+=... ++. ..
T Consensus 183 ----l~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgm-----------------------f~~----~~ 231 (300)
T KOG1201|consen 183 ----LADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTGM-----------------------FDG----AT 231 (300)
T ss_pred ----chhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccccc-----------------------cCC----CC
Confidence 678999999999999988866 57999999999866321 000 00
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCC
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK 326 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~ 326 (413)
.-......+..+.+|+.++.++..+...
T Consensus 232 ------------~~~~l~P~L~p~~va~~Iv~ai~~n~~~ 259 (300)
T KOG1201|consen 232 ------------PFPTLAPLLEPEYVAKRIVEAILTNQAG 259 (300)
T ss_pred ------------CCccccCCCCHHHHHHHHHHHHHcCCcc
Confidence 1112345688899999999999976653
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-26 Score=209.04 Aligned_cols=221 Identities=19% Similarity=0.212 Sum_probs=131.5
Q ss_pred EEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcC----------CCCceEEEEccCCCH------HH
Q 015080 75 VTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFP----------EPGRLQFIYADLGDA------KA 136 (413)
Q Consensus 75 ITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dl~d~------~~ 136 (413)
|||||||||.+|+++|++.+. +|+|+.|.........+..+.+.. ...+++++.+|++++ ++
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999987 999999855432222222222111 136899999999985 45
Q ss_pred HHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCC------
Q 015080 137 VNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITE------ 210 (413)
Q Consensus 137 ~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e------ 210 (413)
..++. ..+|+|||||+..+.. .......+.|+.||+++++.+.+.+.++++|+||+.+.+...+ .+.|
T Consensus 81 ~~~L~--~~v~~IiH~Aa~v~~~---~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~-~~~~~~~~~~ 154 (249)
T PF07993_consen 81 YQELA--EEVDVIIHCAASVNFN---APYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPG-TIEEKVYPEE 154 (249)
T ss_dssp HHHHH--HH--EEEE--SS-SBS----S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TT-T--SSS-HHH
T ss_pred hhccc--cccceeeecchhhhhc---ccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCC-cccccccccc
Confidence 66665 5789999999987643 2455578899999999999999776669999999555544432 2211
Q ss_pred ----CCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 211 ----ETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 211 ----~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
+......+.|..||+.+|.+++.++++.|++++++|||.|+|...++. ..... .+...+...+..+.-
T Consensus 155 ~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~---~~~~~-----~~~~~~~~~~~~~~~ 226 (249)
T PF07993_consen 155 EDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGW---WNSDD-----FFPYLLRSCIALGAF 226 (249)
T ss_dssp --EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS------TTB-----HHHHHHHHHHHH-EE
T ss_pred cccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCce---eeccc-----hHHHHHHHHHHcCCc
Confidence 112344668999999999999999988899999999999999544432 22111 234444444443331
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHH
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAH 316 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~ 316 (413)
....+ ......|+++||.+|++|
T Consensus 227 -p~~~~------~~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 227 -PDLPG------DPDARLDLVPVDYVARAI 249 (249)
T ss_dssp -ES-SB---------TT--EEEHHHHHHHH
T ss_pred -ccccC------CCCceEeEECHHHHHhhC
Confidence 11222 445568999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-25 Score=203.09 Aligned_cols=229 Identities=20% Similarity=0.107 Sum_probs=163.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+|+||++++++|+++|++|++++|+..+.+.....+.. .+.++.++.+|++|++++.++++. .+
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK---AGGKAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999999998865544433333322 245788999999999999888764 47
Q ss_pred CcEEEEcCcccCccCCc----CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGEST----LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||........ +..+..+++|+.+ ++.+++.+++.+.++||++||...+... .+.
T Consensus 82 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~-----------~~~ 150 (258)
T PRK12429 82 VDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGS-----------AGK 150 (258)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCC-----------CCc
Confidence 99999999976543322 2234467788888 6677777777788899999997655322 236
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhc-cccce----e
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARG-IIAGL----K 289 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i----~ 289 (413)
+.|+.+|++.+.+++.++.+ .++++++++||.+++|..... +...... +.+.. .
T Consensus 151 ~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~------------------~~~~~~~~~~~~~~~~~~ 212 (258)
T PRK12429 151 AAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQ------------------IPDLAKERGISEEEVLED 212 (258)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhh------------------hhhhccccCCChHHHHHH
Confidence 78999999999999988776 589999999999999753211 0000000 00000 0
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
.++ .....+++++++|+|+++..++..... ..++.|++.+|.
T Consensus 213 ~~~------~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~ 255 (258)
T PRK12429 213 VLL------PLVPQKRFTTVEEIADYALFLASFAAKGVTGQAWVVDGGW 255 (258)
T ss_pred HHh------ccCCccccCCHHHHHHHHHHHcCccccCccCCeEEeCCCE
Confidence 000 122335799999999999999875332 235789997663
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-25 Score=206.15 Aligned_cols=254 Identities=15% Similarity=0.093 Sum_probs=178.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----CC-C
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----NA-F 146 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~~-~ 146 (413)
+||||||||+||++++++|++.|++|++++|+..+.. ..+++.+.+|++|++++..+++. .+ +
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~------------~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~ 68 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA------------GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEI 68 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc------------CCCCccccccCCCHHHHHHHHhcccCcCCce
Confidence 4899999999999999999999999999998655321 13566788999999999998842 35 8
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHH
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKM 226 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~ 226 (413)
|.|+|+++... +. .....++++++++.|++|||++||..++.. ...+..
T Consensus 69 d~v~~~~~~~~------~~-------~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~------------------~~~~~~ 117 (285)
T TIGR03649 69 SAVYLVAPPIP------DL-------APPMIKFIDFARSKGVRRFVLLSASIIEKG------------------GPAMGQ 117 (285)
T ss_pred eEEEEeCCCCC------Ch-------hHHHHHHHHHHHHcCCCEEEEeeccccCCC------------------CchHHH
Confidence 99999986321 11 134568999999999999999999654311 012233
Q ss_pred HHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeec
Q 015080 227 AEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306 (413)
Q Consensus 227 ~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 306 (413)
.|.++++. .|+++++|||+.+++.... . .....+.+... +. .+ .++..++|
T Consensus 118 ~~~~l~~~---~gi~~tilRp~~f~~~~~~---------------~---~~~~~~~~~~~-~~-~~------~g~~~~~~ 168 (285)
T TIGR03649 118 VHAHLDSL---GGVEYTVLRPTWFMENFSE---------------E---FHVEAIRKENK-IY-SA------TGDGKIPF 168 (285)
T ss_pred HHHHHHhc---cCCCEEEEeccHHhhhhcc---------------c---ccccccccCCe-EE-ec------CCCCccCc
Confidence 44444331 4899999999988864210 0 00111222111 22 22 56778899
Q ss_pred ccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCC--------Ccc---------
Q 015080 307 IDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPG--------DYA--------- 369 (413)
Q Consensus 307 i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~--------~~~--------- 369 (413)
|+++|+|++++.++..+... +++|++++++.+|+.|+++.+.+.+|++.++...+.... ...
T Consensus 169 v~~~Dva~~~~~~l~~~~~~-~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 247 (285)
T TIGR03649 169 VSADDIARVAYRALTDKVAP-NTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLTEEELAQRLQSFGMPEDLARMLASL 247 (285)
T ss_pred ccHHHHHHHHHHHhcCCCcC-CCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999875443 369999999999999999999999999988766543110 000
Q ss_pred -------ccccCHHHHHHhcCcccccccHHHHHHHHHH
Q 015080 370 -------EVYSDPTKIRLELNWTAKYTNLQESLEIAWR 400 (413)
Q Consensus 370 -------~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~ 400 (413)
.....++.+++.+|.+|+ +|++.+++...
T Consensus 248 ~~~~~~g~~~~~~~~~~~~~G~~p~--~~~~~~~~~~~ 283 (285)
T TIGR03649 248 DTAVKNGAEVRLNDVVKAVTGSKPR--GFRDFAESNKA 283 (285)
T ss_pred HHHHhCCccccccchHHHHhCcCCc--cHHHHHHHhhh
Confidence 001135566778899887 68888777643
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=199.21 Aligned_cols=234 Identities=16% Similarity=0.139 Sum_probs=160.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+|+||++++++|+++|++|++++|+....+.+.+.+.. .+.++.++.+|++|.+++.++++. .+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATD---AGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999998764433333333222 235688999999999988776644 56
Q ss_pred CcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||....... .++.+..++.|+.++..+++. +++.+.+++|++||...+.... ..
T Consensus 79 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~-----------~~ 147 (255)
T TIGR01963 79 LDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVASP-----------FK 147 (255)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCCC-----------CC
Confidence 8999999997644322 122345677899986655555 4666788999999976654322 25
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
..|+.+|.+.+.+++.++.+ .+++++++||+.+++|... ..+...... .. +......
T Consensus 148 ~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~------------------~~~~~~~~~-~~-~~~~~~~ 207 (255)
T TIGR01963 148 SAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVE------------------KQIADQAKT-RG-IPEEQVI 207 (255)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHH------------------HHHHhhhcc-cC-CCchHHH
Confidence 68999999999999988766 4899999999999987411 001111000 00 0000000
Q ss_pred -ccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 295 -YSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 295 -~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
..+..+...+++++++|+|++++.++.+.. ...+++|+++++..
T Consensus 208 ~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~g~~ 253 (255)
T TIGR01963 208 REVMLPGQPTKRFVTVDEVAETALFLASDAAAGITGQAIVLDGGWT 253 (255)
T ss_pred HHHHHccCccccCcCHHHHHHHHHHHcCccccCccceEEEEcCccc
Confidence 000023345689999999999999998642 22457999987653
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=200.67 Aligned_cols=240 Identities=18% Similarity=0.156 Sum_probs=161.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+....++. ..++...+.++.++.+|++|.+++.+++++
T Consensus 4 ~~~-k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~---~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 79 (275)
T PRK05876 4 FPG-RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQA---VNHLRAEGFDVHGVMCDVRHREEVTHLADEAFR 79 (275)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH---HHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345 8999999999999999999999999999988754333333 333322335688899999999999888765
Q ss_pred --CCCcEEEEcCcccCccCCc----CChHHHHHHHHHHHHHHHHHH----HHcC-CCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLVVLESM----ARHG-VDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~ll~~~----~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+....... ++.+..+++|+.++.++++++ .+.+ .++||++||...+..
T Consensus 80 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~---------- 149 (275)
T PRK05876 80 LLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVP---------- 149 (275)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccC----------
Confidence 4799999999986543322 223446789999977655554 4554 579999999876632
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
..+...|+.||++.+.+.+.++.+ .|+++++++||.+.++..... ...............
T Consensus 150 -~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~----------------~~~~~~~~~~~~~~~ 212 (275)
T PRK05876 150 -NAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANS----------------ERIRGAACAQSSTTG 212 (275)
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccch----------------hhhcCcccccccccc
Confidence 234678999999988888888766 589999999999987642110 000000000000011
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHH
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKK 350 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~ 350 (413)
..+ .....+++++++|+|++++.++.++ +.|.+.+ +....++.+...+
T Consensus 213 ~~~------~~~~~~~~~~~~dva~~~~~ai~~~-----~~~~~~~--~~~~~~~~~~~~~ 260 (275)
T PRK05876 213 SPG------PLPLQDDNLGVDDIAQLTADAILAN-----RLYVLPH--AASRASIRRRFER 260 (275)
T ss_pred ccc------cccccccCCCHHHHHHHHHHHHHcC-----CeEEecC--hhhHHHHHHHHHH
Confidence 111 2234467899999999999999853 2455543 3334444444433
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=197.69 Aligned_cols=235 Identities=20% Similarity=0.162 Sum_probs=159.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |++|||||+||||++++++|+++|++|++++|+.. ..+...++...+.++.++.+|++|.+++.+++++
T Consensus 6 ~~~-k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK12823 6 FAG-KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL----VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVE 80 (260)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH----HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHH
Confidence 345 89999999999999999999999999999987531 1222222222235688899999999988877765
Q ss_pred --CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHH----HHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNT----LVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~----~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||.... .. ..++.+..+++|+.++ +.+++.+++.+.++||++||...++.
T Consensus 81 ~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~---------- 150 (260)
T PRK12823 81 AFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGI---------- 150 (260)
T ss_pred HcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCC----------
Confidence 579999999985421 11 2233445678888874 46677777777789999999876531
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
+..+|+.||++.+.+++.++.+ .|+++++|+||.|++|............. ......+.+........+ +
T Consensus 151 ---~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~- 223 (260)
T PRK12823 151 ---NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSE--QEKAWYQQIVDQTLDSSL-M- 223 (260)
T ss_pred ---CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccc--cccccHHHHHHHHhccCC-c-
Confidence 1357999999999999999887 48999999999999973110000000000 000222333333332222 1
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
.-+.+++|+|+++++++..... ..+++|++.+++
T Consensus 224 --------------~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~ 258 (260)
T PRK12823 224 --------------KRYGTIDEQVAAILFLASDEASYITGTVLPVGGGD 258 (260)
T ss_pred --------------ccCCCHHHHHHHHHHHcCcccccccCcEEeecCCC
Confidence 1345789999999998865322 245789997664
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-24 Score=202.19 Aligned_cols=231 Identities=12% Similarity=0.085 Sum_probs=165.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++.++.... ....+....+...+.++.++.+|++|.+++++++++
T Consensus 53 l~~-k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 53 LQG-RKALITGADSGIGRATAIAFAREGADIALNYLPEEE-QDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred cCC-CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcch-HHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 445 899999999999999999999999999887754321 112222222222245788999999999999888765
Q ss_pred --CCCcEEEEcCcccCccC-----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE-----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||...... ..++.+..+++|+.++.++++++... ..++||++||...|....
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~---------- 200 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSP---------- 200 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCCC----------
Confidence 47999999999753211 23445668999999999888888753 246999999988775332
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
....|+.||++.+.+++.++.+ .|+++++|+||.+.++..... ..............
T Consensus 201 -~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~-------------~~~~~~~~~~~~~~------ 260 (300)
T PRK06128 201 -TLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSG-------------GQPPEKIPDFGSET------ 260 (300)
T ss_pred -CchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccC-------------CCCHHHHHHHhcCC------
Confidence 2567999999999999999887 689999999999999853210 01111111111111
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCcc
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGR 339 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~ 339 (413)
....+...+|+|.++++++..... ..+++|++.+|..+
T Consensus 261 ----------p~~r~~~p~dva~~~~~l~s~~~~~~~G~~~~v~gg~~~ 299 (300)
T PRK06128 261 ----------PMKRPGQPVEMAPLYVLLASQESSYVTGEVFGVTGGLLL 299 (300)
T ss_pred ----------CCCCCcCHHHHHHHHHHHhCccccCccCcEEeeCCCEeC
Confidence 123467899999999998875332 24579999887654
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=200.79 Aligned_cols=245 Identities=19% Similarity=0.132 Sum_probs=171.8
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
.+ |++|||||+|+||.++++.|+++|++|++++|.........+.+..... ..++.++.+|++|++++.+++++
T Consensus 6 ~~-k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (276)
T PRK05875 6 QD-RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKG-AGAVRYEPADVTDEDQVARAVDAATAW 83 (276)
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccC-CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35 8999999999999999999999999999998754333333333322211 24688899999999999888764
Q ss_pred -CCCcEEEEcCcccCcc-C----CcCChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYVG-E----STLDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~-~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||..... . ..++....+++|+.++.++++++. +.+.++||++||...+..
T Consensus 84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~----------- 152 (276)
T PRK05875 84 HGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNT----------- 152 (276)
T ss_pred cCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCC-----------
Confidence 3799999999964321 1 122344578889999877766554 345579999999776532
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
..+.++|+.+|++.|.+++.++.+ .++++++++||.+.++..... .-............
T Consensus 153 ~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------~~~~~~~~~~~~~~----- 214 (276)
T PRK05875 153 HRWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPI-------------TESPELSADYRACT----- 214 (276)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCcccccc-------------ccCHHHHHHHHcCC-----
Confidence 223678999999999999999877 479999999999887642110 00011111111111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCCC-CccEEEecCCCcc----cHHHHHHHHHHHcCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK-KVGIYNVGTGKGR----SVKEFVEACKKATSA 354 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~-~~~~yni~~~~~~----s~~e~~~~i~~~~g~ 354 (413)
....+++++|+|+++.+++..+... .+++|+++++..+ +..|+++.+.+..|.
T Consensus 215 -----------~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 272 (276)
T PRK05875 215 -----------PLPRVGEVEDVANLAMFLLSDAASWITGQVINVDGGHMLRRGPDFSSMLEPVFGADGL 272 (276)
T ss_pred -----------CCCCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCeeccCCccHHHHHHHHhhHHHH
Confidence 1234678999999999999865432 3579999988876 777887777765543
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=196.65 Aligned_cols=226 Identities=17% Similarity=0.070 Sum_probs=162.2
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
||+||||||||+||++++++|+++|++|+++.+.... ......+.....+.++.++.+|++|++++.+++++ .
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 83 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEE--AAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFG 83 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcC
Confidence 3899999999999999999999999998876653322 11222222222235688999999999999888754 4
Q ss_pred CCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
++|+|||+||...... ..+.....+++|+.++.++++.+ ++.+.+++|++||...+.... +
T Consensus 84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~~-----------~ 152 (249)
T PRK12825 84 RIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGWP-----------G 152 (249)
T ss_pred CCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCCC-----------C
Confidence 7999999999754433 22334557889999987777666 556778999999987663322 2
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
...|+.+|++.+.+++.++.+ .|++++++|||.++|+.... .+....... .+..
T Consensus 153 ~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~--------------~~~~~~~~~----~~~~----- 209 (249)
T PRK12825 153 RSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEA--------------TIEEAREAK----DAET----- 209 (249)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCcccc--------------ccchhHHhh----hccC-----
Confidence 568999999999999988776 68999999999999986321 111111111 1101
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
....+++.+|+++++.+++.... ...+++|+++++.++
T Consensus 210 --------~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~i~~g~~~ 248 (249)
T PRK12825 210 --------PLGRSGTPEDIARAVAFLCSDASDYITGQVIEVTGGVDV 248 (249)
T ss_pred --------CCCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCCEee
Confidence 11238999999999999997543 234589999988654
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-24 Score=199.70 Aligned_cols=241 Identities=13% Similarity=0.042 Sum_probs=168.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+||||||+|+||++++++|+++|++|++++|+.... .+..... +..+.++++|++|++++.++++. .+
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~---~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGDRVVATARDTATL---ADLAEKY---GDRLLPLALDVTDRAAVFAAVETAVEHFGR 77 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHH---HHHHHhc---cCCeeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 7899999999999999999999999999998754322 2221111 24688899999999999887765 47
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHH----HHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVL----ESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll----~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||+..... ..++....+++|+.++..++ +.+++.+.+++|++||.+.+.... ..
T Consensus 78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~-----------~~ 146 (275)
T PRK08263 78 LDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAFP-----------MS 146 (275)
T ss_pred CCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCCCC-----------Cc
Confidence 899999999865433 22345667889999965554 445666778999999977764332 25
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
..|+.+|++.+.+++.++.+ +|++++++|||.+.++.......... .. .....+......
T Consensus 147 ~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~--~~----~~~~~~~~~~~~----------- 209 (275)
T PRK08263 147 GIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRAT--PL----DAYDTLREELAE----------- 209 (275)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCC--Cc----hhhhhHHHHHHH-----------
Confidence 68999999999999998876 78999999999988764311100000 00 001111111111
Q ss_pred ccCCCCceeeec-ccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHH
Q 015080 295 YSTADGTCVRDY-IDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKA 351 (413)
Q Consensus 295 ~~~~~~~~~~~~-i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~ 351 (413)
......+ ++++|++++++.+++.+.... ..|+.++++.+++.++.+.+.+.
T Consensus 210 -----~~~~~~~~~~p~dva~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (275)
T PRK08263 210 -----QWSERSVDGDPEAAAEALLKLVDAENPPL-RLFLGSGVLDLAKADYERRLATW 261 (275)
T ss_pred -----HHHhccCCCCHHHHHHHHHHHHcCCCCCe-EEEeCchHHHHHHHHHHHHHHHH
Confidence 1111245 889999999999999765532 34444444678889999888876
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=196.13 Aligned_cols=223 Identities=14% Similarity=0.087 Sum_probs=160.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+|+||++++++|+++|++|+++.+. +.+...+....+...+.++.++.+|++|++++.+++++ .+
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNS--SKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFGK 84 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCC--cHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 899999999999999999999999999876532 22233333333333345789999999999999988876 56
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||...... ..+..+..+++|+.++..+++++. +.+.+++|++||...+... .+.
T Consensus 85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------~~~ 153 (247)
T PRK12935 85 VDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGG-----------FGQ 153 (247)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCC-----------CCC
Confidence 999999999854432 124456678999999877777665 3456799999996554221 236
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
.+|+.||++.+.+++.++.+ .|+++++++||.+.++... ............
T Consensus 154 ~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~---------------~~~~~~~~~~~~----------- 207 (247)
T PRK12935 154 TNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVA---------------EVPEEVRQKIVA----------- 207 (247)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhh---------------hccHHHHHHHHH-----------
Confidence 78999999999999988876 4899999999999875311 111111111111
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCC
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGK 337 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~ 337 (413)
....+.+.+++|++++++.+++......+++||+.++.
T Consensus 208 -----~~~~~~~~~~edva~~~~~~~~~~~~~~g~~~~i~~g~ 245 (247)
T PRK12935 208 -----KIPKKRFGQADEIAKGVVYLCRDGAYITGQQLNINGGL 245 (247)
T ss_pred -----hCCCCCCcCHHHHHHHHHHHcCcccCccCCEEEeCCCc
Confidence 11224689999999999999875432345899997763
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=204.37 Aligned_cols=224 Identities=13% Similarity=0.042 Sum_probs=158.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+||||++++++|+++|++|++++|+....++..+.+ ...+.++.++.+|++|.++++++++. .+
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAEL---RAQGAEVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHH---HhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 89999999999999999999999999999987544333333222 22234688899999999999888764 46
Q ss_pred CcEEEEcCcccCccCCc----CChHHHHHHHHHHHHHHH----HHHHHcCC------CEEEEeccceecCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLVVL----ESMARHGV------DTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~ll----~~~~~~~~------~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
+|+||||||........ ++.+..+++|+.++.+++ +.+.+.+. +++|++||.+.+...
T Consensus 84 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-------- 155 (287)
T PRK06194 84 VHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAP-------- 155 (287)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC--------
Confidence 89999999986543322 334456889999866644 44666543 699999998776432
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhC-----CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKNS-----DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
.+..+|+.+|++.+.+++.++.+. +++++++.||.|..+-. . .....+
T Consensus 156 ---~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~-----------------------~-~~~~~~ 208 (287)
T PRK06194 156 ---PAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIW-----------------------Q-SERNRP 208 (287)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCccc-----------------------c-ccccCc
Confidence 235789999999999999988763 47778888877654321 0 111112
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCc
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANI 356 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~ 356 (413)
..+.+ ++.+.++|++++|++.++.... .++..|+++.+.+.+....
T Consensus 209 -~~~~~------~~~~~~~~~~~~~~~~~~~~~~-----------------~~s~~dva~~i~~~~~~~~ 254 (287)
T PRK06194 209 -ADLAN------TAPPTRSQLIAQAMSQKAVGSG-----------------KVTAEEVAQLVFDAIRAGR 254 (287)
T ss_pred -hhccc------CccccchhhHHHHHHHhhhhcc-----------------CCCHHHHHHHHHHHHHcCC
Confidence 33333 5667778888888887653210 1688888888888775443
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-24 Score=195.78 Aligned_cols=226 Identities=18% Similarity=0.132 Sum_probs=162.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |+++||||+|+||.+++++|+++|++|++++|.....+...+.+.. .+..+.++.+|++|.+++++++++
T Consensus 4 ~~~-k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (250)
T PRK07774 4 FDD-KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVA---DGGTAIAVQVDVSDPDSAKAMADATVS 79 (250)
T ss_pred cCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 345 8999999999999999999999999999998754333333333322 234678899999999998887764
Q ss_pred --CCCcEEEEcCcccCcc-------CCcCChHHHHHHHHHHHHHHHHHHHH----cCCCEEEEeccceecCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVG-------ESTLDPLKYYHNITSNTLVVLESMAR----HGVDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~-------~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
.++|+||||||+.... ...+..+..+++|+.++.++++++.. .+.++||++||..+|.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~--------- 150 (250)
T PRK07774 80 AFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL--------- 150 (250)
T ss_pred HhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC---------
Confidence 4799999999975321 12233445788999998776666653 4567999999987763
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
+.++|+.||++.+.+++.++++ .|+++++++||.+..+.... .....+........+
T Consensus 151 -----~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~--------------~~~~~~~~~~~~~~~- 210 (250)
T PRK07774 151 -----YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRT--------------VTPKEFVADMVKGIP- 210 (250)
T ss_pred -----CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccc--------------cCCHHHHHHHHhcCC-
Confidence 2467999999999999999887 47999999999988765321 111122222222222
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCccc
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRS 340 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s 340 (413)
+ .-+.+++|+|++++.++.... ...+++||+.+++.++
T Consensus 211 ~---------------~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~g~~~~ 249 (250)
T PRK07774 211 L---------------SRMGTPEDLVGMCLFLLSDEASWITGQIFNVDGGQIIR 249 (250)
T ss_pred C---------------CCCcCHHHHHHHHHHHhChhhhCcCCCEEEECCCeecc
Confidence 1 124578999999999887542 2345799998886553
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=198.46 Aligned_cols=235 Identities=16% Similarity=0.070 Sum_probs=160.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+||||||+|+||.++++.|+++|++|++++|+........+.+..... ...+.++.+|++|.+++.+++++ .+
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYG-EGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC-CceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 7899999999999999999999999999998765443333333332211 13688999999999999887765 57
Q ss_pred CcEEEEcCcccCccCCcC----ChHHHHHHHHHHHHHHH----HHHHHcC-CCEEEEecccee-cCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGESTL----DPLKYYHNITSNTLVVL----ESMARHG-VDTLIYSSTCAT-YGEPEKMPITEETPQA 215 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~----~~~~~~~~n~~~~~~ll----~~~~~~~-~~~iV~~SS~~~-~~~~~~~~~~e~~~~~ 215 (413)
+|+||||||........+ +.+..+++|+.++..++ +.+.+.+ .+++|++||... ++. .
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~------------~ 149 (259)
T PRK12384 82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGS------------K 149 (259)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCC------------C
Confidence 999999999765433222 33456788999966544 4444455 469999999553 321 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc-cceeEe
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII-AGLKVK 291 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~ 291 (413)
...+|+.||++.+.+++.++.+ +|+++++++||.++++.... .+++.+........ ......
T Consensus 150 ~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 215 (259)
T PRK12384 150 HNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQ--------------SLLPQYAKKLGIKPDEVEQYY 215 (259)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhh--------------hhhHHHHHhcCCChHHHHHHH
Confidence 2568999999999999998865 79999999999988753210 11222111110000 000000
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCc
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKG 338 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~ 338 (413)
. ++.....+++++|++++++.++.+... ..+++|++.+|+.
T Consensus 216 ~------~~~~~~~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g~~ 257 (259)
T PRK12384 216 I------DKVPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQV 257 (259)
T ss_pred H------HhCcccCCCCHHHHHHHHHHHcCcccccccCceEEEcCCEE
Confidence 1 233446789999999999988764322 2457999988764
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-24 Score=198.88 Aligned_cols=241 Identities=16% Similarity=0.124 Sum_probs=163.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+|+||+++++.|+++|++|++++|+....+...+.+.+... +.++.++.+|++|++++++ +++ .+
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~~~~-~~~~~~~~~~ 81 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNL-QQNIKVQQLDVTDQNSIHN-FQLVLKEIGR 81 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-CCceeEEecCCCCHHHHHH-HHHHHHhcCC
Confidence 7899999999999999999999999999998765443333333332211 2478999999999999876 543 57
Q ss_pred CcEEEEcCcccCccCCc----CChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||........ ++.+..+++|+.++.++++. +++.+.++||++||...+.. ..+.
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~-----------~~~~ 150 (280)
T PRK06914 82 IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVG-----------FPGL 150 (280)
T ss_pred eeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCC-----------CCCC
Confidence 89999999976543322 23445688999996666555 56677789999999654322 1236
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
..|+.+|++.+.+++.++.+ +|++++++|||.+.++............. ... .........+....
T Consensus 151 ~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~--------- 219 (280)
T PRK06914 151 SPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQS-ETT-SPYKEYMKKIQKHI--------- 219 (280)
T ss_pred chhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhcccccccccc-ccc-cchHHHHHHHHHHH---------
Confidence 78999999999999998744 69999999999998874221100000000 000 00111111111100
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHH
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVK 342 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~ 342 (413)
......+++++|+|++++.++.++... ..|+++++..+++.
T Consensus 220 -----~~~~~~~~~~~dva~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 260 (280)
T PRK06914 220 -----NSGSDTFGNPIDVANLIVEIAESKRPK--LRYPIGKGVKLMIL 260 (280)
T ss_pred -----hhhhhccCCHHHHHHHHHHHHcCCCCC--cccccCCchHHHHH
Confidence 011235789999999999999977654 47999877666554
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=195.04 Aligned_cols=227 Identities=16% Similarity=0.114 Sum_probs=163.0
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
++ |+||||||+|+||.+++++|+++|++|++++|+..+... ..+++...+.++.++.+|++|.+++.+++++
T Consensus 5 ~~-~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~---~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 5 EG-RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAA---TAELVEAAGGKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CC-CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHH---HHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45 899999999999999999999999999999876433222 2222222235688999999999999988864
Q ss_pred -CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||...+.. ..++....++.|+.++.++++.+ .+.+.+++|++||...++. +.
T Consensus 81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~----------~~ 150 (251)
T PRK12826 81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRV----------GY 150 (251)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhcc----------CC
Confidence 37999999999765422 22344567889999987777665 4556789999999776511 22
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
.+...|+.+|.+++.+++.++.+ .|++++++|||.++||..... .............+
T Consensus 151 ~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~--------------~~~~~~~~~~~~~~----- 211 (251)
T PRK12826 151 PGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNL--------------GDAQWAEAIAAAIP----- 211 (251)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhc--------------CchHHHHHHHhcCC-----
Confidence 23568999999999999998776 589999999999999853211 00011111211111
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCc
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKG 338 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~ 338 (413)
...+++++|+|+++..++..... ..+++|++.+|..
T Consensus 212 -----------~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~ 248 (251)
T PRK12826 212 -----------LGRLGEPEDIAAAVLFLASDEARYITGQTLPVDGGAT 248 (251)
T ss_pred -----------CCCCcCHHHHHHHHHHHhCccccCcCCcEEEECCCcc
Confidence 12578999999999998865432 2458999977653
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=195.78 Aligned_cols=230 Identities=16% Similarity=0.099 Sum_probs=163.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+|+||++++++|+++|++|++++|+....++..+.++ ..+.++.++.+|++|.+++++++++
T Consensus 8 ~~~-k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (255)
T PRK07523 8 LTG-RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLK---GQGLSAHALAFDVTDHDAVRAAIDAFEA 83 (255)
T ss_pred CCC-CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---hcCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 446 899999999999999999999999999998875433332333332 2235688899999999999988865
Q ss_pred --CCCcEEEEcCcccCccCCc----CChHHHHHHHHHHHHHHHHHHHH----cCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLVVLESMAR----HGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~ll~~~~~----~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||...+.... +..+..+++|+.++.++++++.+ .+.++||++||..... +
T Consensus 84 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~-----------~ 152 (255)
T PRK07523 84 EIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSAL-----------A 152 (255)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhcc-----------C
Confidence 4699999999976543322 22345677999998777776653 4678999999965432 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
..+..+|+.+|.+.+.+++.++.+ +|+++++++||.+.++..... ...+.....+....+
T Consensus 153 ~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~-------------~~~~~~~~~~~~~~~---- 215 (255)
T PRK07523 153 RPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAAL-------------VADPEFSAWLEKRTP---- 215 (255)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhh-------------ccCHHHHHHHHhcCC----
Confidence 234678999999999999999875 689999999999998742110 000111222222111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCccc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGRS 340 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~s 340 (413)
...+..++|+|++++.++..... ..++++++.+|...|
T Consensus 216 ------------~~~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg~~~~ 254 (255)
T PRK07523 216 ------------AGRWGKVEELVGACVFLASDASSFVNGHVLYVDGGITAS 254 (255)
T ss_pred ------------CCCCcCHHHHHHHHHHHcCchhcCccCcEEEECCCeecc
Confidence 23467899999999999875322 245789998776544
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=198.30 Aligned_cols=233 Identities=16% Similarity=0.123 Sum_probs=163.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |++|||||+|+||.++++.|+++|++|++++|+....+ +...++ ...+.++.+|++|.+++.+++++
T Consensus 4 l~~-~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~---~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (257)
T PRK07067 4 LQG-KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARAR---LAALEI---GPAAIAVSLDVTRQDSIDRIVAAAVE 76 (257)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHH---HHHHHh---CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 445 89999999999999999999999999999987543322 222222 24588899999999999888765
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHc----C-CCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARH----G-VDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||...... ..++.+..+++|+.++.++++++... + .++||++||.....
T Consensus 77 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 145 (257)
T PRK07067 77 RFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRR----------- 145 (257)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCC-----------
Confidence 47999999999764322 22345567889999988888777532 2 36899999954321
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc--c
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA--G 287 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 287 (413)
+..+...|+.||++.+.+++.++.+ .|+++++++||.++++.... ....+ .......+ .
T Consensus 146 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~---------------~~~~~-~~~~~~~~~~~ 209 (257)
T PRK07067 146 GEALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQ---------------VDALF-ARYENRPPGEK 209 (257)
T ss_pred CCCCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhh---------------hhhhh-hhccCCCHHHH
Confidence 1224678999999999999999876 78999999999999974211 00000 00000000 0
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCcc
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGR 339 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~ 339 (413)
....+ .......+.+++|+|+++++++..... ..+++|++.+|+.+
T Consensus 210 ~~~~~------~~~~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~~~ 256 (257)
T PRK07067 210 KRLVG------EAVPLGRMGVPDDLTGMALFLASADADYIVAQTYNVDGGNWM 256 (257)
T ss_pred HHHHh------hcCCCCCccCHHHHHHHHHHHhCcccccccCcEEeecCCEeC
Confidence 00001 233456789999999999999985432 24579999887654
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-24 Score=196.34 Aligned_cols=231 Identities=19% Similarity=0.190 Sum_probs=158.5
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
.+ |+||||||+|+||+++|+.|+++|++|++++|+.+..++..+.+..... ...+.++.+|++|++++.+++++
T Consensus 3 ~~-k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 3 KG-KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFK-SKKLSLVELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred CC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcC-CCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 35 8999999999999999999999999999998765444434333322211 13567789999999999888865
Q ss_pred -CCCcEEEEcCcccCc---cC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYV---GE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~---~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+|||||+.... .. ..+.....+++|+.+ ++.+++.+++.+.++||++||.+.+..... ...+.
T Consensus 81 ~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-~~~~~ 159 (256)
T PRK09186 81 YGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKF-EIYEG 159 (256)
T ss_pred cCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccc-hhccc
Confidence 458999999975321 11 112234467778876 456677777777789999999765543221 12233
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
.+......|+.||++.+.+++.++.+ .|+++++++||.++++... .+ ........+
T Consensus 160 ~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~~---------------~~----~~~~~~~~~-- 218 (256)
T PRK09186 160 TSMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPE---------------AF----LNAYKKCCN-- 218 (256)
T ss_pred cccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCCH---------------HH----HHHHHhcCC--
Confidence 33333457999999999999988886 6899999999988764310 11 111111111
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCC
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTG 336 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~ 336 (413)
...+++++|+|++++.++..... ..++.+.+.+|
T Consensus 219 --------------~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 253 (256)
T PRK09186 219 --------------GKGMLDPDDICGTLVFLLSDQSKYITGQNIIVDDG 253 (256)
T ss_pred --------------ccCCCCHHHhhhhHhheeccccccccCceEEecCC
Confidence 12478999999999999975432 23467777665
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=193.97 Aligned_cols=226 Identities=15% Similarity=0.098 Sum_probs=159.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+|+||++++++|+++|++|++++|.... ...+....+...+.++.++.+|++|++++.++++. .+
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDE--ELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGR 80 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchh--HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999999999875322 22222222222235789999999999998887764 47
Q ss_pred CcEEEEcCcccCccC------CcCChHHHHHHHHHHHHHHHHHHHH----cC------CCEEEEeccceecCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE------STLDPLKYYHNITSNTLVVLESMAR----HG------VDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~------~~~~~~~~~~~n~~~~~~ll~~~~~----~~------~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
+|+||||||...... ..+..+..+++|+.++.++++++.. .. .++||++||...+...
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 154 (256)
T PRK12745 81 IDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVS------ 154 (256)
T ss_pred CCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCC------
Confidence 999999999753211 2234556788999998887766643 22 4679999997654322
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
.+...|+.+|++.+.+++.++.+ +|+++++++||.+.++... .+............
T Consensus 155 -----~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~---------------~~~~~~~~~~~~~~- 213 (256)
T PRK12745 155 -----PNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTA---------------PVTAKYDALIAKGL- 213 (256)
T ss_pred -----CCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCcccc---------------ccchhHHhhhhhcC-
Confidence 23578999999999999999876 7899999999999886422 11111211111111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCcc
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGR 339 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~ 339 (413)
. ....+.+++|+++++..++..... ..+++|++.++...
T Consensus 214 -~-------------~~~~~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~gg~~~ 253 (256)
T PRK12745 214 -V-------------PMPRWGEPEDVARAVAALASGDLPYSTGQAIHVDGGLSI 253 (256)
T ss_pred -C-------------CcCCCcCHHHHHHHHHHHhCCcccccCCCEEEECCCeec
Confidence 1 123577999999999988864322 23579999877543
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=195.55 Aligned_cols=167 Identities=14% Similarity=0.100 Sum_probs=130.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+||||||+|+||++++++|+++|++|++++|+..+. . .+.+. .+.++.++.+|++|.+++.++++. .+
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~---~-~l~~~--~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAAR---A-DFEAL--HPDRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHH---H-HHHhh--cCCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 7899999999999999999999999999998754322 1 12211 124688899999999999888764 46
Q ss_pred CcEEEEcCcccCccCCcC----ChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGESTL----DPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~----~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||........+ .....+++|+.++.++++++ ++.+.++||++||...+... .+.
T Consensus 79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~-----------~~~ 147 (277)
T PRK06180 79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITM-----------PGI 147 (277)
T ss_pred CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCC-----------CCc
Confidence 999999999865433222 23446889999988877764 45566799999997665322 236
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
.+|+.+|++.+.+++.++.+ +|+++++++||.+.++.
T Consensus 148 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~ 187 (277)
T PRK06180 148 GYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDW 187 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCc
Confidence 78999999999999998876 58999999999998764
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=193.89 Aligned_cols=225 Identities=19% Similarity=0.149 Sum_probs=158.2
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEE-ecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIV-DNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
++ ++++||||+|+||++++++|+++|++|+++ .|. .+...+....+...+..+.++.+|++|++++.+++++
T Consensus 5 ~~-~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~---~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~ 80 (254)
T PRK12746 5 DG-KVALVTGASRGIGRAIAMRLANDGALVAIHYGRN---KQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKN 80 (254)
T ss_pred CC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHH
Confidence 35 899999999999999999999999999775 332 2333333333322235688999999999999888764
Q ss_pred --------CCCcEEEEcCcccCccCCcCC----hHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCC
Q 015080 144 --------NAFDAVMHFAAVAYVGESTLD----PLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 --------~~~dvvi~~Ag~~~~~~~~~~----~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|+||||||........+. ....+++|+.++.++++.+.+. +.+++|++||..++...
T Consensus 81 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~------ 154 (254)
T PRK12746 81 ELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGF------ 154 (254)
T ss_pred HhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCC------
Confidence 269999999997644332222 2446779999998888887753 34699999998776432
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
.+...|+.||++.+.+++.++.+ .|+++++++||.+.++-..... .-+.+.......
T Consensus 155 -----~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~-------------~~~~~~~~~~~~-- 214 (254)
T PRK12746 155 -----TGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLL-------------DDPEIRNFATNS-- 214 (254)
T ss_pred -----CCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhc-------------cChhHHHHHHhc--
Confidence 23668999999999999988876 6899999999999887421100 001111111111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCC
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTG 336 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~ 336 (413)
.....+++++|+++++..++..... ..+++|++.++
T Consensus 215 --------------~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~~ 251 (254)
T PRK12746 215 --------------SVFGRIGQVEDIADAVAFLASSDSRWVTGQIIDVSGG 251 (254)
T ss_pred --------------CCcCCCCCHHHHHHHHHHHcCcccCCcCCCEEEeCCC
Confidence 1123567899999999888875432 23479999765
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=196.54 Aligned_cols=223 Identities=13% Similarity=0.156 Sum_probs=155.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+++||||+|+||++++++|+++|++|++++|+..... +....+...+.++.++.+|++|++++.+++++ .+
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCE---ELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGE 87 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999886543222 22222222235688899999999999888764 47
Q ss_pred CcEEEEcCcccCccCCc----CChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||........ +.....+++|+.++.++++.+. +.+.++||++||...+.... +.
T Consensus 88 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~~-----------~~ 156 (274)
T PRK07775 88 IEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQRP-----------HM 156 (274)
T ss_pred CCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCCC-----------Cc
Confidence 89999999975433222 2334567899999877766653 45567999999987764322 25
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
..|+.+|++.|.+++.++.+ .|++++++|||.+.++.... ..+ .....+...... .
T Consensus 157 ~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~-----~~~------~~~~~~~~~~~~-------~--- 215 (274)
T PRK07775 157 GAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWS-----LPA------EVIGPMLEDWAK-------W--- 215 (274)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCccccc-----CCh------hhhhHHHHHHHH-------h---
Confidence 68999999999999999876 48999999999876542110 000 111111111110 0
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEec
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVG 334 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~ 334 (413)
.......+++++|+|++++.++.++... .+||+.
T Consensus 216 ----~~~~~~~~~~~~dva~a~~~~~~~~~~~--~~~~~~ 249 (274)
T PRK07775 216 ----GQARHDYFLRASDLARAITFVAETPRGA--HVVNME 249 (274)
T ss_pred ----cccccccccCHHHHHHHHHHHhcCCCCC--CeeEEe
Confidence 1112356899999999999999865432 588884
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=193.90 Aligned_cols=240 Identities=13% Similarity=0.053 Sum_probs=163.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |++|||||+|+||++++++|+++|++|++++|+..+.++..+.+.+.. +.++.++.+|++|++++++++++
T Consensus 6 l~~-k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (263)
T PRK08339 6 LSG-KLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES--NVDVSYIVADLTKREDLERTVKELKN 82 (263)
T ss_pred CCC-CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc--CCceEEEEecCCCHHHHHHHHHHHHh
Confidence 456 899999999999999999999999999999876544333333333221 24688999999999999888765
Q ss_pred -CCCcEEEEcCcccCccC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|++|||||...... ..++.+..+++|+.+ ++.+++.|++.+.++||++||...+.. .
T Consensus 83 ~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~-----------~ 151 (263)
T PRK08339 83 IGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEP-----------I 151 (263)
T ss_pred hCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCC-----------C
Confidence 57999999999754332 223345567888776 667788887777789999999776432 2
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
.....|+.+|++.+.+++.++.+ +||++++|.||.|..+...... ... ....+...+......... +
T Consensus 152 ~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~---~--- 221 (263)
T PRK08339 152 PNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLA---QDR-AKREGKSVEEALQEYAKP---I--- 221 (263)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHH---Hhh-hhccCCCHHHHHHHHhcc---C---
Confidence 22567999999999999999988 6899999999998765210000 000 000000001111111111 1
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCccc
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRS 340 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s 340 (413)
....+...+|+|+++++++.... ...++++.+.+|...+
T Consensus 222 ----------p~~r~~~p~dva~~v~fL~s~~~~~itG~~~~vdgG~~~~ 261 (263)
T PRK08339 222 ----------PLGRLGEPEEIGYLVAFLASDLGSYINGAMIPVDGGRLNS 261 (263)
T ss_pred ----------CcccCcCHHHHHHHHHHHhcchhcCccCceEEECCCcccc
Confidence 12246788999999999886432 2345678887665544
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=194.23 Aligned_cols=235 Identities=11% Similarity=0.068 Sum_probs=159.8
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
.+ |+||||||+|+||++++++|+++|++|++++|+....+...+.++ ..+.++.++.+|++|.+++.+++++
T Consensus 4 ~~-k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 4 KG-KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEID---DLGRRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred CC-CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---HhCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 35 899999999999999999999999999999876543333333332 2235688999999999999887765
Q ss_pred -CCCcEEEEcCcccCc-c----CCcCChHHHHHHHHHHHHHHHHHHHHc---CCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYV-G----ESTLDPLKYYHNITSNTLVVLESMARH---GVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~-~----~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||.... . ...++....+++|+.++..+++++... ..++||++||...+. +.
T Consensus 80 ~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~-----------~~ 148 (258)
T PRK07890 80 FGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRH-----------SQ 148 (258)
T ss_pred cCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhcc-----------CC
Confidence 579999999997533 1 122344567889999988887777542 236999999976543 22
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
.+...|+.+|.+.+.+++.++.+ .++++++++||.+++|........... ..+.-.+.........
T Consensus 149 ~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------- 217 (258)
T PRK07890 149 PKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAG----KYGVTVEQIYAETAAN------- 217 (258)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhccc----ccCCCHHHHHHHHhhc-------
Confidence 33678999999999999999876 589999999999999852210000000 0000001111111111
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
.....+.+++|+|++++.++.... ...++++.+.++.
T Consensus 218 ---------~~~~~~~~~~dva~a~~~l~~~~~~~~~G~~i~~~gg~ 255 (258)
T PRK07890 218 ---------SDLKRLPTDDEVASAVLFLASDLARAITGQTLDVNCGE 255 (258)
T ss_pred ---------CCccccCCHHHHHHHHHHHcCHhhhCccCcEEEeCCcc
Confidence 112246889999999999887432 2234567675553
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=189.67 Aligned_cols=225 Identities=16% Similarity=0.145 Sum_probs=156.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEE-ecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIV-DNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
|+++||||+|+||++++++|+++|++|+++ +|+....+++.+.++ ..+.++.++.+|++|++++.+++++ .
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIE---ALGRKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH---hcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 799999999999999999999999998764 443322222223332 2245788999999999999888865 4
Q ss_pred CCcEEEEcCcccCccCCcCC----hHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGESTLD----PLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~~~~----~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
++|+||||||........+. ....+++|+.++.++++++. +.+.++||++||...+. +..+
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-----------~~~~ 150 (250)
T PRK08063 82 RLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIR-----------YLEN 150 (250)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcc-----------CCCC
Confidence 79999999997543332222 23357789988666655554 45677999999966542 2233
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
...|+.+|++.+.+++.++.+ .|+++++++||.+..+.... +. . ...+........+
T Consensus 151 ~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~-~~-----------~-~~~~~~~~~~~~~------- 210 (250)
T PRK08063 151 YTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKH-FP-----------N-REELLEDARAKTP------- 210 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhh-cc-----------C-chHHHHHHhcCCC-------
Confidence 678999999999999998876 68999999999998764211 00 0 0111111111111
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCc
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKG 338 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~ 338 (413)
...+++.+|+|++++.++..... ..++.+++.++..
T Consensus 211 ---------~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg~~ 247 (250)
T PRK08063 211 ---------AGRMVEPEDVANAVLFLCSPEADMIRGQTIIVDGGRS 247 (250)
T ss_pred ---------CCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCCee
Confidence 12468999999999999875432 2457899877654
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=191.18 Aligned_cols=228 Identities=14% Similarity=0.120 Sum_probs=159.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||.+++++|+++|++|++++|+..+.......+.. +.++.++.+|++|++++.+++++
T Consensus 3 ~~~-~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (251)
T PRK07231 3 LEG-KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA----GGRAIAVAADVSDEADVEAAVAAALE 77 (251)
T ss_pred cCC-cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc----CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 345 8999999999999999999999999999998865443333332222 35688999999999999988765
Q ss_pred --CCCcEEEEcCcccCccC-----CcCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE-----STLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~-----~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||...... ..+..+..+++|+.++.. +++.+.+.+.++||++||...+...
T Consensus 78 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------- 148 (251)
T PRK07231 78 RFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPR--------- 148 (251)
T ss_pred HhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCC---------
Confidence 47999999999743221 223345578899988555 4455555677899999998776432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
.+...|+.+|.+.+.+++.++.+ .++++++++||.+.++....... ...+.........
T Consensus 149 --~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~-----------~~~~~~~~~~~~~----- 210 (251)
T PRK07231 149 --PGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMG-----------EPTPENRAKFLAT----- 210 (251)
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhc-----------ccChHHHHHHhcC-----
Confidence 23678999999999999998876 48999999999997764221100 0000111111111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
.....+++++|+|++++.++..... ..+..+.+.++.
T Consensus 211 -----------~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~ 248 (251)
T PRK07231 211 -----------IPLGRLGTPEDIANAALFLASDEASWITGVTLVVDGGR 248 (251)
T ss_pred -----------CCCCCCcCHHHHHHHHHHHhCccccCCCCCeEEECCCc
Confidence 1123578999999999999975432 234677776654
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-24 Score=194.51 Aligned_cols=229 Identities=14% Similarity=0.116 Sum_probs=158.5
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+++||||+|+||++|+++|+++|++|++++|+........+ .+. .+..+.++++|++|+++++++++.
T Consensus 3 ~~~-k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~---~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~ 77 (252)
T PRK06138 3 LAG-RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAA---AIA-AGGRAFARQGDVGSAEAVEALVDFVAA 77 (252)
T ss_pred CCC-cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHH---HHh-cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 446 899999999999999999999999999999875433222222 222 235688999999999999988765
Q ss_pred --CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||....... .++.+..+++|+.++.+ +++++++.+.++||++||.......
T Consensus 78 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~---------- 147 (252)
T PRK06138 78 RWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGG---------- 147 (252)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCC----------
Confidence 479999999997643322 22334468899998654 5555666777899999997554221
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+..+|+.+|++.+.+++.++.+ .|+++++++||.++++......... ..+..........
T Consensus 148 -~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~----------~~~~~~~~~~~~~----- 211 (252)
T PRK06138 148 -RGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARH----------ADPEALREALRAR----- 211 (252)
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccc----------cChHHHHHHHHhc-----
Confidence 22578999999999999999877 4899999999999987532110000 0001111111100
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTG 336 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~ 336 (413)
.....+++++|++++++.++.+... ..+..+.+.++
T Consensus 212 ----------~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 248 (252)
T PRK06138 212 ----------HPMNRFGTAEEVAQAALFLASDESSFATGTTLVVDGG 248 (252)
T ss_pred ----------CCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCC
Confidence 0112478999999999999886442 23467777654
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-23 Score=191.38 Aligned_cols=235 Identities=17% Similarity=0.122 Sum_probs=167.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+|+||.++++.|+++|++|++++|+....+...+. + . ..++.++++|++|.+++.+++++ .+
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~---~-~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADA---L-G-DARFVPVACDLTDAASLAAALANAAAERGP 77 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---h-c-CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 7899999999999999999999999999998754433322222 2 1 24688999999999999887764 46
Q ss_pred CcEEEEcCcccCccCCc-CCh---HHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGEST-LDP---LKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~-~~~---~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||...+.... .++ ...+++|+.++..+++++ .+.+.++||++||...+... ..
T Consensus 78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~ 145 (257)
T PRK07074 78 VDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAAL------------GH 145 (257)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCCC------------CC
Confidence 99999999975432221 222 334668888876666655 45567899999996543211 13
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
..|+.+|++.+.+++.++++ .|+++++++||.+.++...... ...+.+......
T Consensus 146 ~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~------------~~~~~~~~~~~~----------- 202 (257)
T PRK07074 146 PAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARV------------AANPQVFEELKK----------- 202 (257)
T ss_pred cccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhccc------------ccChHHHHHHHh-----------
Confidence 47999999999999999877 4799999999999887421100 001111111111
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCcccHHHHHHHHHH
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKGRSVKEFVEACKK 350 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~~s~~e~~~~i~~ 350 (413)
.....+|++++|++++++.++... ....+.++++.++...+..|+++.+.+
T Consensus 203 -----~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 203 -----WYPLQDFATPDDVANAVLFLASPAARAITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred -----cCCCCCCCCHHHHHHHHHHHcCchhcCcCCcEEEeCCCcCcCChhhhhhhcc
Confidence 112357899999999999999642 222357889998888999999988754
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=191.74 Aligned_cols=227 Identities=14% Similarity=0.102 Sum_probs=158.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
++||||||+|+||++++++|+++|++|++..+.. .......+..+...+.++.++.+|+++.+++.+++++ .+
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKR--AEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGV 84 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCC--hHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999998766432 2222222232222234677899999999998887765 57
Q ss_pred CcEEEEcCcccCccCCcCC----hHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCCCCCCh
Q 015080 146 FDAVMHFAAVAYVGESTLD----PLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQAPINP 219 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~----~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~ 219 (413)
+|+||||||...+....+. .+..+++|+.++.++++++.+. ..++||++||...+.. ..+...
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-----------~~~~~~ 153 (252)
T PRK06077 85 ADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRP-----------AYGLSI 153 (252)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCC-----------CCCchH
Confidence 9999999997544332221 2456889999977777776643 2469999999877642 334778
Q ss_pred hHHHHHHHHHHHHHHHhhC--CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccC
Q 015080 220 YGKAKKMAEDIILDFSKNS--DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST 297 (413)
Q Consensus 220 Y~~sK~~~e~~~~~~~~~~--gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 297 (413)
|+.+|++.+.+++.++.+. ++++.+++||.+.++...... ............. +
T Consensus 154 Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~------------~~~~~~~~~~~~~---~--------- 209 (252)
T PRK06077 154 YGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLF------------KVLGMSEKEFAEK---F--------- 209 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhh------------hcccccHHHHHHh---c---------
Confidence 9999999999999998874 799999999999876421000 0000000000000 1
Q ss_pred CCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCc
Q 015080 298 ADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKG 338 (413)
Q Consensus 298 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~ 338 (413)
.....+++++|+|++++.++..... .+++|++.+++.
T Consensus 210 ---~~~~~~~~~~dva~~~~~~~~~~~~-~g~~~~i~~g~~ 246 (252)
T PRK06077 210 ---TLMGKILDPEEVAEFVAAILKIESI-TGQVFVLDSGES 246 (252)
T ss_pred ---CcCCCCCCHHHHHHHHHHHhCcccc-CCCeEEecCCee
Confidence 1123689999999999999975432 347999988754
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-23 Score=188.60 Aligned_cols=223 Identities=17% Similarity=0.108 Sum_probs=160.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+||||||+|+||.+++++|+++|++|++++|+..+.......+. ..+.++.++.+|++|++++.+++++ ..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELR---AAGGEARVLVFDVSDEAAVRALIEAAVEAFGA 82 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 799999999999999999999999999999876543332233222 2245788999999999998887764 56
Q ss_pred CcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+|||+||....... .+.....++.|+.+..++++++ .+.+.++||++||..... +..+.
T Consensus 83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~-----------~~~~~ 151 (246)
T PRK05653 83 LDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVT-----------GNPGQ 151 (246)
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc-----------CCCCC
Confidence 8999999997544221 1223456888999987777666 455678999999965432 12336
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
..|+.+|.+.+.+++.++++ .+++++++||+.++|+... .+............
T Consensus 152 ~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~---------------~~~~~~~~~~~~~~--------- 207 (246)
T PRK05653 152 TNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTE---------------GLPEEVKAEILKEI--------- 207 (246)
T ss_pred cHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchh---------------hhhHHHHHHHHhcC---------
Confidence 78999999999999998765 5899999999999997532 11111111111111
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCc
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKG 338 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~ 338 (413)
....+++++|+++++..++..... ..+++|++++|+.
T Consensus 208 -------~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg~~ 245 (246)
T PRK05653 208 -------PLGRLGQPEEVANAVAFLASDAASYITGQVIPVNGGMY 245 (246)
T ss_pred -------CCCCCcCHHHHHHHHHHHcCchhcCccCCEEEeCCCee
Confidence 124678999999999999875322 2457999988753
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.8e-24 Score=195.45 Aligned_cols=254 Identities=19% Similarity=0.241 Sum_probs=173.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcC--------CCCceEEEEccCCC------HH
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFP--------EPGRLQFIYADLGD------AK 135 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~--------~~~~~~~~~~Dl~d------~~ 135 (413)
++||+||||||+|.+|+++|+.+ ..+|+|+.|- .+.+.+.+.+++... ...+++++.+|+.. ..
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA-~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~ 79 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRA-QSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSER 79 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEec-CCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHH
Confidence 47999999999999999999988 4599999984 444444444443332 24789999999984 45
Q ss_pred HHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCC----CCC
Q 015080 136 AVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPI----TEE 211 (413)
Q Consensus 136 ~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~----~e~ 211 (413)
.++++. ..+|+|||||+..+. ...+......|+.||..+++.+...+.+.+.|+||.+++........ +|.
T Consensus 80 ~~~~La--~~vD~I~H~gA~Vn~---v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~ 154 (382)
T COG3320 80 TWQELA--ENVDLIIHNAALVNH---VFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEI 154 (382)
T ss_pred HHHHHh--hhcceEEecchhhcc---cCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCccccccc
Confidence 677777 679999999997652 34567788899999999999999988889999999999865432222 222
Q ss_pred CC-----CCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 212 TP-----QAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 212 ~~-----~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
++ ..+.++|+.||+++|.++++.... |++++++|||+|.|+..++.+...+ .+...+...+.-+.
T Consensus 155 ~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D--------~~~Rlv~~~~~lg~- 224 (382)
T COG3320 155 SPTRNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRD--------FLTRLVLGLLQLGI- 224 (382)
T ss_pred cccccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccch--------HHHHHHHHHHHhCC-
Confidence 22 234678999999999999998886 9999999999999998755432211 33333333333222
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc----------CCCCccEEE-ecCCCcccHHHHHHHHHH
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA----------QPKKVGIYN-VGTGKGRSVKEFVEACKK 350 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~----------~~~~~~~yn-i~~~~~~s~~e~~~~i~~ 350 (413)
++ ......+.+.++++++++....... +......|. ..-|..+...++.+.+.+
T Consensus 225 -~P---------~~~~~~~~~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~ 289 (382)
T COG3320 225 -AP---------DSEYSLDMLPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDEYVDWLIS 289 (382)
T ss_pred -CC---------CcccchhhCccceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhHHHHhHhh
Confidence 11 2333344455444444333322211 111112333 233677889999888887
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=190.77 Aligned_cols=228 Identities=14% Similarity=0.101 Sum_probs=159.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+|+||++++++|+++|++|++++|+.....++.+.+.+ .+.++.++++|++|.++++++++. .+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRA---KGGNAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999999988754333333222322 235789999999999999888754 46
Q ss_pred CcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||....... .+..+..+++|+.++.++++++ ++.+.+++|++||...+..... .
T Consensus 81 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~~-----------~ 149 (250)
T TIGR03206 81 VDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSSG-----------E 149 (250)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCCC-----------C
Confidence 9999999997533221 1223456889999987765555 4566789999999877754332 5
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
.+|+.+|++.+.+++.++.+ .++++++++||.++++......+.... ...+...+....+
T Consensus 150 ~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-------- 212 (250)
T TIGR03206 150 AVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAEN---------PEKLREAFTRAIP-------- 212 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCC---------hHHHHHHHHhcCC--------
Confidence 68999999999999999887 489999999999998742211100000 0011222222111
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...+...+|+|+++..++.... ...++++++.++.
T Consensus 213 --------~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~ 248 (250)
T TIGR03206 213 --------LGRLGQPDDLPGAILFFSSDDASFITGQVLSVSGGL 248 (250)
T ss_pred --------ccCCcCHHHHHHHHHHHcCcccCCCcCcEEEeCCCc
Confidence 1134677999999999887543 2235789997653
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=193.10 Aligned_cols=239 Identities=15% Similarity=0.085 Sum_probs=160.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|..+..+ +...++ ..+.++.++++|++|.+++.++++.
T Consensus 15 ~l~~-k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 89 (280)
T PLN02253 15 RLLG-KVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQ---NVCDSL-GGEPNVCFFHCDVTVEDDVSRAVDFTV 89 (280)
T ss_pred ccCC-CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH---HHHHHh-cCCCceEEEEeecCCHHHHHHHHHHHH
Confidence 3456 89999999999999999999999999999987543222 222222 2235688999999999999888764
Q ss_pred ---CCCcEEEEcCcccCcc--C----CcCChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEecccee-cCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVG--E----STLDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCAT-YGEPEKMPIT 209 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~--~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~-~~~~~~~~~~ 209 (413)
.++|+||||||..... . ..++.+..+++|+.++.++++++. +.+.+++|++||... ++..
T Consensus 90 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~------ 163 (280)
T PLN02253 90 DKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGGL------ 163 (280)
T ss_pred HHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccCC------
Confidence 4799999999975321 1 223456689999999877666554 345578999998554 3221
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
...+|+.||++.|.+++.++.+ .|+++++++||.+.++........... ....+..+........+
T Consensus 164 ------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 232 (280)
T PLN02253 164 ------GPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDER-----TEDALAGFRAFAGKNAN 232 (280)
T ss_pred ------CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccc-----hhhhhhhhHHHhhcCCC
Confidence 2457999999999999999887 589999999999987642111000000 00111111111111111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcccH
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSV 341 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~ 341 (413)
+ ....++++|+|+++++++.... ...+.++++.+|...+.
T Consensus 233 ---l------------~~~~~~~~dva~~~~~l~s~~~~~i~G~~i~vdgG~~~~~ 273 (280)
T PLN02253 233 ---L------------KGVELTVDDVANAVLFLASDEARYISGLNLMIDGGFTCTN 273 (280)
T ss_pred ---C------------cCCCCCHHHHHHHHHhhcCcccccccCcEEEECCchhhcc
Confidence 0 0124789999999999887432 22347888977755443
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=193.79 Aligned_cols=229 Identities=17% Similarity=0.102 Sum_probs=155.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+++||||+|+||++++++|+++|++|++++|+.. .+. .+. . .++.++.+|++|.+++++++++ .+
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~---~l~-~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVD---KME-DLA---S--LGVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH---HHH-HHH---h--CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999886532 221 111 1 3588899999999999888764 47
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||+..... ..++.+..+++|+.+ ++.+++.+++.+.++||++||...+... ...
T Consensus 75 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~-----------~~~ 143 (273)
T PRK06182 75 IDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIYT-----------PLG 143 (273)
T ss_pred CCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCCC-----------CCc
Confidence 999999999865433 223456678899988 6777788888888899999996543211 124
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
..|+.||++.+.+++.++.+ .|+++++++||.+.++............. .. ...........+...
T Consensus 144 ~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~-------- 212 (273)
T PRK06182 144 AWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTS--GN-GAYAEQAQAVAASMR-------- 212 (273)
T ss_pred cHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccc--cc-cchHHHHHHHHHHHH--------
Confidence 57999999999999888765 68999999999998874210000000000 00 000000000000000
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCC
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTG 336 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~ 336 (413)
.......+.+.+|+|++++.++....+. ..|+++.+
T Consensus 213 ----~~~~~~~~~~~~~vA~~i~~~~~~~~~~--~~~~~g~~ 248 (273)
T PRK06182 213 ----STYGSGRLSDPSVIADAISKAVTARRPK--TRYAVGFG 248 (273)
T ss_pred ----HhhccccCCCHHHHHHHHHHHHhCCCCC--ceeecCcc
Confidence 1112235679999999999999865433 47877543
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=233.56 Aligned_cols=261 Identities=17% Similarity=0.192 Sum_probs=186.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC----CEEEEEecCCCCCchhhhhhhhhc--------CCCCceEEEEccCCC-----
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS----YRVTIVDNLSRGNIGAVKVLQELF--------PEPGRLQFIYADLGD----- 133 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~~~~Dl~d----- 133 (413)
++|||||||||||.+++++|++++ ++|+++.|........ +.+.+.. ....++.++.+|+++
T Consensus 972 ~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~-~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443 972 ITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGL-ERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred ceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHH-HHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence 789999999999999999999987 7899988854433322 2221110 001368999999974
Q ss_pred -HHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCC--------
Q 015080 134 -AKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPE-------- 204 (413)
Q Consensus 134 -~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~-------- 204 (413)
.+.+.++. .++|+|||||+..+. ..........|+.|+.++++.+.+.+.++++|+||.++|+...
T Consensus 1051 ~~~~~~~l~--~~~d~iiH~Aa~~~~---~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~ 1125 (1389)
T TIGR03443 1051 SDEKWSDLT--NEVDVIIHNGALVHW---VYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDEL 1125 (1389)
T ss_pred CHHHHHHHH--hcCCEEEECCcEecC---ccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhh
Confidence 45556665 579999999997643 2234455568999999999999998888999999999996421
Q ss_pred ----CCCCCCCCC-----CCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHH
Q 015080 205 ----KMPITEETP-----QAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISG 275 (413)
Q Consensus 205 ----~~~~~e~~~-----~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 275 (413)
...+.|+.+ ..+.+.|+.||+++|.++..+.+ .|++++++|||.|||+...+... ...++.
T Consensus 1126 ~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~---------~~~~~~ 1195 (1389)
T TIGR03443 1126 VQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK-RGLRGCIVRPGYVTGDSKTGATN---------TDDFLL 1195 (1389)
T ss_pred hhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh-CCCCEEEECCCccccCCCcCCCC---------chhHHH
Confidence 112333322 22356799999999999998766 59999999999999997543211 013444
Q ss_pred HHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCcccHHHHHHHHHHHcCC
Q 015080 276 ACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGRSVKEFVEACKKATSA 354 (413)
Q Consensus 276 ~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~~g~ 354 (413)
.++....... ..+ +....++|++|+|+|++++.++..+.. ..+.+||++++..+++.++++.+.+. |.
T Consensus 1196 ~~~~~~~~~~----~~p------~~~~~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~-g~ 1264 (1389)
T TIGR03443 1196 RMLKGCIQLG----LIP------NINNTVNMVPVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKTY-GY 1264 (1389)
T ss_pred HHHHHHHHhC----CcC------CCCCccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHHHHHHHHHHh-CC
Confidence 4443332211 111 445568999999999999999876532 22358999998899999999999764 65
Q ss_pred Ccee
Q 015080 355 NIKV 358 (413)
Q Consensus 355 ~~~~ 358 (413)
+.+.
T Consensus 1265 ~~~~ 1268 (1389)
T TIGR03443 1265 DVEI 1268 (1389)
T ss_pred CCCc
Confidence 5443
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=190.20 Aligned_cols=232 Identities=19% Similarity=0.213 Sum_probs=158.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC-HHHHHHHhhcC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD-AKAVNKFFSEN 144 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~ 144 (413)
+.++ |+||||||||+||++++++|++.|++|+++.|+..+. ...+ ....++.++.+|++| .+++.+.+. .
T Consensus 14 ~~~~-~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~---~~~~----~~~~~~~~~~~Dl~d~~~~l~~~~~-~ 84 (251)
T PLN00141 14 NVKT-KTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKA---KTSL----PQDPSLQIVRADVTEGSDKLVEAIG-D 84 (251)
T ss_pred cccC-CeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHH---HHhc----ccCCceEEEEeeCCCCHHHHHHHhh-c
Confidence 3444 8999999999999999999999999999987654321 1111 112468899999998 456665551 2
Q ss_pred CCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC-CCCCChhHHH
Q 015080 145 AFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP-QAPINPYGKA 223 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~-~~~~~~Y~~s 223 (413)
++|+|||++|..... ++...+++|..++.++++++++.++++||++||.++|+.....+..+... ..+...|..+
T Consensus 85 ~~d~vi~~~g~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 160 (251)
T PLN00141 85 DSDAVICATGFRRSF----DPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQILNPAYIFLNLFGLTLVA 160 (251)
T ss_pred CCCEEEECCCCCcCC----CCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcccccCcchhHHHHHHHHHHH
Confidence 799999999864211 12223578889999999999999999999999999997543222211110 0112233456
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCcee
Q 015080 224 KKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCV 303 (413)
Q Consensus 224 K~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 303 (413)
|..+|.+++. .|+++++|||+.+++....+ . +.+.. .....
T Consensus 161 k~~~e~~l~~----~gi~~~iirpg~~~~~~~~~--------------~---------------~~~~~------~~~~~ 201 (251)
T PLN00141 161 KLQAEKYIRK----SGINYTIVRPGGLTNDPPTG--------------N---------------IVMEP------EDTLY 201 (251)
T ss_pred HHHHHHHHHh----cCCcEEEEECCCccCCCCCc--------------e---------------EEECC------CCccc
Confidence 7777776654 78999999999999753210 0 11100 11122
Q ss_pred eecccHHHHHHHHHHHHHhcCCCCccEEEecCCC---cccHHHHHHHHHH
Q 015080 304 RDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGK---GRSVKEFVEACKK 350 (413)
Q Consensus 304 ~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~---~~s~~e~~~~i~~ 350 (413)
..+|+.+|+|++++.++..+.... .++.+.+.. ..++.+++..+++
T Consensus 202 ~~~i~~~dvA~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 202 EGSISRDQVAEVAVEALLCPESSY-KVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred cCcccHHHHHHHHHHHhcChhhcC-cEEEEecCCCCCchhHHHHHHHhhc
Confidence 357999999999999998765432 578787632 3688888887764
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.3e-23 Score=187.25 Aligned_cols=222 Identities=14% Similarity=0.090 Sum_probs=160.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhh-hhhhcCCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKV-LQELFPEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
|+++||||+|+||++++++|+++|++|+++++...+.....+. ..+....+..+.++.+|++|.+++.++++. .
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVEEFG 86 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999988754433333222 222222345788999999999999888754 5
Q ss_pred CCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHH-----HcCCCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMA-----RHGVDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~-----~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
++|+||||||...... ..++....+++|+.++.++++++. +.+.+++|++||...+... .
T Consensus 87 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------~ 155 (249)
T PRK12827 87 RLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGN-----------R 155 (249)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCCC-----------C
Confidence 7999999999765322 222345578899999999888887 4566799999997765332 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
+...|+.+|++.+.+++.++.+ .++++++++||.+.++.... .+. ........+
T Consensus 156 ~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~--------------~~~---~~~~~~~~~------ 212 (249)
T PRK12827 156 GQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADN--------------AAP---TEHLLNPVP------ 212 (249)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccc--------------cch---HHHHHhhCC------
Confidence 3668999999999999998876 48999999999999975321 111 011111111
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCC
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTG 336 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~ 336 (413)
...+.+++|+++++..++... ....++.+++.++
T Consensus 213 ----------~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~g 247 (249)
T PRK12827 213 ----------VQRLGEPDEVAALVAFLVSDAASYVTGQVIPVDGG 247 (249)
T ss_pred ----------CcCCcCHHHHHHHHHHHcCcccCCccCcEEEeCCC
Confidence 112458899999999888643 2223578888655
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-23 Score=188.75 Aligned_cols=228 Identities=14% Similarity=0.086 Sum_probs=159.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+++||||+|+||.+++++|+++|++|++++|+..+.+++.+.+.+ .+.++.++.+|++|++++++++++
T Consensus 4 ~~~-k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T PRK07478 4 LNG-KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRA---EGGEAVALAGDVRDEAYAKALVALAVE 79 (254)
T ss_pred CCC-CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 345 8999999999999999999999999999998765443333333332 235688999999999998888764
Q ss_pred --CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHH----HHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNT----LVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~----~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+... .. ..++.+..+++|+.++ +.+++.+++.+.++||++||...+..
T Consensus 80 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~---------- 149 (254)
T PRK07478 80 RFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTA---------- 149 (254)
T ss_pred hcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhcc----------
Confidence 479999999997532 11 1233455788999874 45577777777789999999765521
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
+..+...|+.||++.+.+++.++.+ .|+++++|+||.+-.+..... ...+..........+
T Consensus 150 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-------------~~~~~~~~~~~~~~~--- 213 (254)
T PRK07478 150 GFPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAM-------------GDTPEALAFVAGLHA--- 213 (254)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccc-------------cCCHHHHHHHHhcCC---
Confidence 1223678999999999999999887 479999999999976631100 000111111111111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...+...+|+|+++++++.... ...++++.+.++.
T Consensus 214 -------------~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg~ 249 (254)
T PRK07478 214 -------------LKRMAQPEEIAQAALFLASDAASFVTGTALLVDGGV 249 (254)
T ss_pred -------------CCCCcCHHHHHHHHHHHcCchhcCCCCCeEEeCCch
Confidence 1235688999999999887432 2245677775553
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=190.44 Aligned_cols=230 Identities=16% Similarity=0.170 Sum_probs=159.7
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC-CchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG-NIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
++ |++|||||+||||.+++++|+++|++|++++|+... .+...+.++. .+.++.++.+|++|++++.+++++
T Consensus 5 ~~-k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 5 PG-KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEA---AGGRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CC-cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 45 899999999999999999999999999998875432 1222222222 235688899999999999887764
Q ss_pred --CCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCCCCCCh
Q 015080 144 --NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQAPINP 219 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~ 219 (413)
.++|+||||||.... ...++...+++|+.++.++++++.+. ..+++|++||........ ..+.....+
T Consensus 81 ~~~~~d~vi~~ag~~~~--~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~------~~~~~~~~~ 152 (248)
T PRK07806 81 EFGGLDALVLNASGGME--SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT------VKTMPEYEP 152 (248)
T ss_pred hCCCCcEEEECCCCCCC--CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc------ccCCccccH
Confidence 469999999986422 22345567889999999999998864 236999999954321110 011222678
Q ss_pred hHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccccc
Q 015080 220 YGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYS 296 (413)
Q Consensus 220 Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 296 (413)
|+.||+++|.+++.++.+ .|+++++++|+.+-++... .+... ..+.. +..
T Consensus 153 Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~-------------------~~~~~---~~~~~-~~~---- 205 (248)
T PRK07806 153 VARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTA-------------------TLLNR---LNPGA-IEA---- 205 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhh-------------------hhhcc---CCHHH-HHH----
Confidence 999999999999999876 6899999999887765311 00000 00000 000
Q ss_pred CCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcc
Q 015080 297 TADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGR 339 (413)
Q Consensus 297 ~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~ 339 (413)
.......+++++|+|++++.+++.... .+++|++++++..
T Consensus 206 --~~~~~~~~~~~~dva~~~~~l~~~~~~-~g~~~~i~~~~~~ 245 (248)
T PRK07806 206 --RREAAGKLYTVSEFAAEVARAVTAPVP-SGHIEYVGGADYF 245 (248)
T ss_pred --HHhhhcccCCHHHHHHHHHHHhhcccc-CccEEEecCccce
Confidence 000123689999999999999995533 4589999887643
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=190.78 Aligned_cols=229 Identities=14% Similarity=0.076 Sum_probs=159.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||.+++++|+++|++|++.+|.... +...+....+...+.++.++.+|++|.+++.+++++
T Consensus 47 ~~~-k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 47 LKD-RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEE-EDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred cCC-CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcch-hhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 445 899999999999999999999999999987753221 111111111112235688899999999998877765
Q ss_pred --CCCcEEEEcCcccCc-c----CCcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYV-G----ESTLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~-~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|++|||||.... . ...++.+..+++|+.++..+++++... ..++||++||...+....
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~~---------- 194 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPSP---------- 194 (294)
T ss_pred HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCCC----------
Confidence 579999999996421 1 123445667899999988888777642 236999999988764322
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
...+|+.||++.+.+++.++.+ +|+++++|+||.|.++..... ..............+
T Consensus 195 -~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~-------------~~~~~~~~~~~~~~~----- 255 (294)
T PRK07985 195 -HLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISG-------------GQTQDKIPQFGQQTP----- 255 (294)
T ss_pred -CcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCcccccccc-------------CCCHHHHHHHhccCC-----
Confidence 2568999999999999999887 689999999999998752100 000111111111111
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
...+...+|+|+++++++..... ..++++.+.+|.
T Consensus 256 -----------~~r~~~pedva~~~~fL~s~~~~~itG~~i~vdgG~ 291 (294)
T PRK07985 256 -----------MKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGE 291 (294)
T ss_pred -----------CCCCCCHHHHHHHHHhhhChhcCCccccEEeeCCCe
Confidence 12456789999999999875332 244688886654
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=187.56 Aligned_cols=234 Identities=15% Similarity=0.118 Sum_probs=157.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+|+||++++++|+++|++|++++|+.... ....+.++.+|++|.+++++++++
T Consensus 7 ~~~-k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~------------~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (260)
T PRK06523 7 LAG-KRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD------------LPEGVEFVAADLTTAEGCAAVARAVLE 73 (260)
T ss_pred CCC-CEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh------------cCCceeEEecCCCCHHHHHHHHHHHHH
Confidence 446 8999999999999999999999999999998754321 124688999999999998876654
Q ss_pred --CCCcEEEEcCcccCcc------CCcCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVG------ESTLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~------~~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||..... ...++.+..+++|+.++.. +++.+++.+.++||++||...+...
T Consensus 74 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~-------- 145 (260)
T PRK06523 74 RLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPL-------- 145 (260)
T ss_pred HcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCCC--------
Confidence 5799999999964321 1223455678899998654 5666666667899999997655321
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
..+..+|+.+|++.+.+++.++.+ .|+++++++||.|.++............ ...........+......+
T Consensus 146 --~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 219 (260)
T PRK06523 146 --PESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEA----AGTDYEGAKQIIMDSLGGI 219 (260)
T ss_pred --CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhh----cCCCHHHHHHHHHHHhccC
Confidence 123678999999999999999877 5899999999999987421000000000 0000000111110000001
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCccc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKGRS 340 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~~s 340 (413)
....+...+|+|+++.+++... ....++.+.+.+|...|
T Consensus 220 -------------p~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~vdgg~~~~ 259 (260)
T PRK06523 220 -------------PLGRPAEPEEVAELIAFLASDRAASITGTEYVIDGGTVPT 259 (260)
T ss_pred -------------ccCCCCCHHHHHHHHHHHhCcccccccCceEEecCCccCC
Confidence 1123567899999999998743 22345788887775543
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=189.43 Aligned_cols=230 Identities=15% Similarity=0.116 Sum_probs=155.0
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
.+ |++|||||+|+||.+++++|+++|++|++++|+ ...++..+.+. ..+.++.++.+|++|++++.+++++
T Consensus 5 ~~-k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 5 EN-KVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIK---SNGGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHH---hcCCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 45 899999999999999999999999999999875 32232333332 2235688999999999998877765
Q ss_pred -CCCcEEEEcCcccCc-cCCc----CChHHHHHHHHHHH----HHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYV-GEST----LDPLKYYHNITSNT----LVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~-~~~~----~~~~~~~~~n~~~~----~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+... .... +..+..+++|+.++ +.+++.+++.+ ++||++||...+...
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 148 (272)
T PRK08589 80 FGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSIINTSSFSGQAAD---------- 148 (272)
T ss_pred cCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEeCchhhcCCC----------
Confidence 569999999997542 2211 22344677888885 55666666665 799999997765322
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.....|+.||++.+.+++.++.+ .|+++++|.||.|..+......+..+. .+...+....... .
T Consensus 149 -~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~-------~~~~~~~~~~~~~---~-- 215 (272)
T PRK08589 149 -LYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSED-------EAGKTFRENQKWM---T-- 215 (272)
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchh-------hHHHHHhhhhhcc---C--
Confidence 22568999999999999999887 589999999999987632110000000 0000000000000 0
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
....+..++|+++++++++.... ...++.+.+.++.
T Consensus 216 -----------~~~~~~~~~~va~~~~~l~s~~~~~~~G~~i~vdgg~ 252 (272)
T PRK08589 216 -----------PLGRLGKPEEVAKLVVFLASDDSSFITGETIRIDGGV 252 (272)
T ss_pred -----------CCCCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCc
Confidence 11235688999999999887432 2244677776553
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-23 Score=188.64 Aligned_cols=224 Identities=19% Similarity=0.140 Sum_probs=156.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+++ |+++||||+|+||++++++|+++|++|++++|+..+. .+..++. +..+.++.+|++|.+++.+++++
T Consensus 7 ~~~~-k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~---~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK05717 7 GHNG-RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERG---SKVAKAL---GENAWFIAMDVADEAQVAAGVAEVL 79 (255)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHH---HHHHHHc---CCceEEEEccCCCHHHHHHHHHHHH
Confidence 4556 8999999999999999999999999999998643322 2222222 24688999999999998776654
Q ss_pred ---CCCcEEEEcCcccCcc--C----CcCChHHHHHHHHHHHHHHHHHHHH---cCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVG--E----STLDPLKYYHNITSNTLVVLESMAR---HGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~--~----~~~~~~~~~~~n~~~~~~ll~~~~~---~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||..... . ..++.+..+++|+.++.++++++.+ ...+++|++||...+....
T Consensus 80 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~~------- 152 (255)
T PRK05717 80 GQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSEP------- 152 (255)
T ss_pred HHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCCC-------
Confidence 4699999999976432 1 2233456889999999998888863 2347899999976543222
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKNS--DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
...+|+.+|++.+.+++.++.+. ++++++++||.+.++..... ...+ .........+
T Consensus 153 ----~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~-------------~~~~-~~~~~~~~~~--- 211 (255)
T PRK05717 153 ----DTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQR-------------RAEP-LSEADHAQHP--- 211 (255)
T ss_pred ----CCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccc-------------cchH-HHHHHhhcCC---
Confidence 25679999999999999998884 59999999999998753210 0000 0010000001
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
...+.+++|+|+++..++..... ..++++.+.++.
T Consensus 212 -------------~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~gg~ 247 (255)
T PRK05717 212 -------------AGRVGTVEDVAAMVAWLLSRQAGFVTGQEFVVDGGM 247 (255)
T ss_pred -------------CCCCcCHHHHHHHHHHHcCchhcCccCcEEEECCCc
Confidence 12467899999999888864322 234677775543
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=185.82 Aligned_cols=226 Identities=15% Similarity=0.086 Sum_probs=157.8
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
++ |++|||||+|+||.+++++|+++|++|+++++... ....+...++...+..+.++.+|++|.+++.+++++
T Consensus 8 ~~-k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 84 (258)
T PRK09134 8 AP-RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSR--DEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAA 84 (258)
T ss_pred CC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45 89999999999999999999999999988765322 222222222222245688999999999999888764
Q ss_pred -CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHH----cCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMAR----HGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||...... ..+..+..+++|+.++.++++++.. .+.+++|+++|...+...
T Consensus 85 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~----------- 153 (258)
T PRK09134 85 LGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLN----------- 153 (258)
T ss_pred cCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCC-----------
Confidence 56999999999754322 2234456788999998887776654 335689999886554321
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 215 APINPYGKAKKMAEDIILDFSKNS--DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
+...+|+.||++.+.+++.++++. ++++++++||.++.... .....+... ....+ .
T Consensus 154 p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~----------------~~~~~~~~~-~~~~~----~- 211 (258)
T PRK09134 154 PDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGR----------------QSPEDFARQ-HAATP----L- 211 (258)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCcc----------------cChHHHHHH-HhcCC----C-
Confidence 124579999999999999998873 49999999999876421 011111111 11111 0
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccH
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSV 341 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~ 341 (413)
....+++|+|++++.+++.... .++.|++.++..+++
T Consensus 212 -----------~~~~~~~d~a~~~~~~~~~~~~-~g~~~~i~gg~~~~~ 248 (258)
T PRK09134 212 -----------GRGSTPEEIAAAVRYLLDAPSV-TGQMIAVDGGQHLAW 248 (258)
T ss_pred -----------CCCcCHHHHHHHHHHHhcCCCc-CCCEEEECCCeeccc
Confidence 1247799999999999985433 457999988776554
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-23 Score=190.45 Aligned_cols=235 Identities=17% Similarity=0.128 Sum_probs=157.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+........ ... .. .++.++.+|++|++++.+++++
T Consensus 9 ~~~-~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~---~~~-~~-~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (264)
T PRK12829 9 LDG-LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATA---ARL-PG-AKVTATVADVADPAQVERVFDTAVE 82 (264)
T ss_pred cCC-CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---HHH-hc-CceEEEEccCCCHHHHHHHHHHHHH
Confidence 345 89999999999999999999999999999987543222221 111 11 2578899999999999888765
Q ss_pred --CCCcEEEEcCcccCcc-----CCcCChHHHHHHHHHHHHHHHHHH----HHcCC-CEEEEeccceecCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVG-----ESTLDPLKYYHNITSNTLVVLESM----ARHGV-DTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+|||+||..... ...++....++.|+.++.++++++ .+.+. +++|++||......
T Consensus 83 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~--------- 153 (264)
T PRK12829 83 RFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLG--------- 153 (264)
T ss_pred HhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccC---------
Confidence 4799999999976221 122345667899999988877766 34444 67888888554321
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
..+...|+.+|.+.+.+++.++.+ .+++++++|||.++|+.... +.+...... .....
T Consensus 154 --~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~---------------~~~~~~~~~--~~~~~ 214 (264)
T PRK12829 154 --YPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRR---------------VIEARAQQL--GIGLD 214 (264)
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHH---------------Hhhhhhhcc--CCChh
Confidence 122567999999999999998876 48999999999999985321 111000000 00000
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKG 338 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~ 338 (413)
....... .......+++++|+|+++..++... ....++.|+++++..
T Consensus 215 ~~~~~~~---~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~g~~ 262 (264)
T PRK12829 215 EMEQEYL---EKISLGRMVEPEDIAATALFLASPAARYITGQAISVDGNVE 262 (264)
T ss_pred HHHHHHH---hcCCCCCCCCHHHHHHHHHHHcCccccCccCcEEEeCCCcc
Confidence 0000000 0111235899999999998887642 222457999987754
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=191.29 Aligned_cols=235 Identities=15% Similarity=0.124 Sum_probs=159.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+++||||+|+||.++++.|+++|++|++++|+....++..+.+.+.. .+.++.++.+|++|++++.+++++
T Consensus 5 l~~-k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 5 LAG-KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV-AGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred cCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc-CCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 446 899999999999999999999999999999876544333333333211 235688999999999999888765
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..++.+..+++|+.++.. +++.+++.+.++||++||...+...
T Consensus 83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 152 (260)
T PRK07063 83 AFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKII---------- 152 (260)
T ss_pred HhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccCC----------
Confidence 57999999999754322 123345568889998655 4455555666799999997654322
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+..+|+.||++.+.+++.++.+ .|++++.|+||.+-.+.....+...+ . ............+
T Consensus 153 -~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~--------~-~~~~~~~~~~~~~---- 218 (260)
T PRK07063 153 -PGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQP--------D-PAAARAETLALQP---- 218 (260)
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccC--------C-hHHHHHHHHhcCC----
Confidence 23568999999999999999887 58999999999987653210000000 0 0001111111111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
...+...+|+|+++++++.... .-.++++.+.+|...
T Consensus 219 ------------~~r~~~~~~va~~~~fl~s~~~~~itG~~i~vdgg~~~ 256 (260)
T PRK07063 219 ------------MKRIGRPEEVAMTAVFLASDEAPFINATCITIDGGRSV 256 (260)
T ss_pred ------------CCCCCCHHHHHHHHHHHcCccccccCCcEEEECCCeee
Confidence 1135678999999999887532 224567777666443
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=185.14 Aligned_cols=224 Identities=14% Similarity=0.114 Sum_probs=157.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |+||||||+|+||.+++++|+++|++|++++|+. ..+..+.+++. +..+.++.+|+++.+++.+++++
T Consensus 3 ~~~-k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (248)
T TIGR01832 3 LEG-KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEAL---GRRFLSLTADLSDIEAIKALVDSAVE 76 (248)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhc---CCceEEEECCCCCHHHHHHHHHHHHH
Confidence 346 8999999999999999999999999999998643 22333333332 35688999999999999877764
Q ss_pred --CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHH----HcC-CCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMA----RHG-VDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||....... .+..+..+++|+.++.++++++. +.+ .+++|++||...+....
T Consensus 77 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~-------- 148 (248)
T TIGR01832 77 EFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGI-------- 148 (248)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCCC--------
Confidence 569999999998644322 23345568899998776666654 444 57999999987764322
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
....|+.+|++.+.+++.++++ +|+++++++||.|..+..... .. ............
T Consensus 149 ---~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~----~~---------~~~~~~~~~~~~---- 208 (248)
T TIGR01832 149 ---RVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQAL----RA---------DEDRNAAILERI---- 208 (248)
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhcc----cc---------ChHHHHHHHhcC----
Confidence 2457999999999999999988 489999999999987642100 00 000001111111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTG 336 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~ 336 (413)
....++..+|+|++++.++..... ..+.++.+.+|
T Consensus 209 ------------~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~~dgg 244 (248)
T TIGR01832 209 ------------PAGRWGTPDDIGGPAVFLASSASDYVNGYTLAVDGG 244 (248)
T ss_pred ------------CCCCCcCHHHHHHHHHHHcCccccCcCCcEEEeCCC
Confidence 123678999999999999874332 23456666444
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=186.26 Aligned_cols=228 Identities=17% Similarity=0.107 Sum_probs=159.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |++|||||+|+||.++++.|+++|++|++++|+..+.+...+.+. ..+.++.++.+|++|++++++++++
T Consensus 10 ~~~-k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~---~~~~~~~~~~~Dl~d~~~i~~~~~~~~~ 85 (259)
T PRK08213 10 LSG-KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLE---ALGIDALWIAADVADEADIERLAEETLE 85 (259)
T ss_pred cCC-CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 345 899999999999999999999999999999875443333333332 2235688899999999999776654
Q ss_pred --CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHHc-----CCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMARH-----GVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||....... .+.....+++|+.++.++++++... +.+++|++||...+.....
T Consensus 86 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~------- 158 (259)
T PRK08213 86 RFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPP------- 158 (259)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCc-------
Confidence 579999999997533222 2233456789999999988876543 5679999999765532211
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
...+..+|+.+|++.+.+++.++++ .|+++++++|+.+-++... ...+..........+ +
T Consensus 159 ~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~---------------~~~~~~~~~~~~~~~-~- 221 (259)
T PRK08213 159 EVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTR---------------GTLERLGEDLLAHTP-L- 221 (259)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchh---------------hhhHHHHHHHHhcCC-C-
Confidence 1123578999999999999999877 5899999999988765321 223333333332222 1
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
..+...+|+++++..++.... ...+..+++.++
T Consensus 222 --------------~~~~~~~~va~~~~~l~~~~~~~~~G~~~~~~~~ 255 (259)
T PRK08213 222 --------------GRLGDDEDLKGAALLLASDASKHITGQILAVDGG 255 (259)
T ss_pred --------------CCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 123467999998888886432 224567877655
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=186.23 Aligned_cols=225 Identities=17% Similarity=0.175 Sum_probs=158.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+|+||.+++++|+++|++|++++|. ++.+++.+.+.+. +.++.++.+|+++.+++.+++++
T Consensus 13 l~~-k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~i~~~~~~~~~ 87 (258)
T PRK06935 13 LDG-KVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE---GRKVTFVQVDLTKPESAEKVVKEALE 87 (258)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc---CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 456 899999999999999999999999999999875 3333333333322 35688999999999999888765
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHH----HHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNT----LVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~----~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|++|||||...... ..++.+..+++|+.++ +.+++.+++.+.+++|++||...+....
T Consensus 88 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 158 (258)
T PRK06935 88 EFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGGK--------- 158 (258)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCCC---------
Confidence 47999999999754322 1223445778899885 4455666666678999999987654322
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
...+|+.+|++.+.+++.++++ .|+++++|+||.+..+..... ...+..........+
T Consensus 159 --~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~-------------~~~~~~~~~~~~~~~---- 219 (258)
T PRK06935 159 --FVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPI-------------RADKNRNDEILKRIP---- 219 (258)
T ss_pred --CchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhc-------------ccChHHHHHHHhcCC----
Confidence 2568999999999999999887 589999999999887642110 000001111111111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
...+...+|+++++.+++.... ...+.++.+.+|
T Consensus 220 ------------~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~~dgg 254 (258)
T PRK06935 220 ------------AGRWGEPDDLMGAAVFLASRASDYVNGHILAVDGG 254 (258)
T ss_pred ------------CCCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCC
Confidence 1246788999999998887432 224567777655
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-22 Score=185.75 Aligned_cols=228 Identities=16% Similarity=0.131 Sum_probs=162.5
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+++ |++|||||+|+||.+++++|+++|++|++++|..... ..+....+...+.++.++.+|++|.+++.+++++
T Consensus 43 ~~~~-k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~ 119 (290)
T PRK06701 43 KLKG-KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHED--ANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETV 119 (290)
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchH--HHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 4556 8999999999999999999999999999998754321 1111122222235688999999999999887765
Q ss_pred ---CCCcEEEEcCcccCccC-----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE-----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||...... ..+.....+++|+.++.++++++.+. ..++||++||..+|.....
T Consensus 120 ~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~~~-------- 191 (290)
T PRK06701 120 RELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGNET-------- 191 (290)
T ss_pred HHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCCCC--------
Confidence 47999999999753211 12234557889999988888887653 3469999999887754322
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
...|+.+|++.+.+++.++.+ .|+++++|+||.++.+.... ...+........
T Consensus 192 ---~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~--------------~~~~~~~~~~~~------- 247 (290)
T PRK06701 192 ---LIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPS--------------DFDEEKVSQFGS------- 247 (290)
T ss_pred ---cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCccccc--------------ccCHHHHHHHHh-------
Confidence 467999999999999999987 48999999999999874211 011111111111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
......+.+++|+|++++.++..... ..+.++++.++.
T Consensus 248 ---------~~~~~~~~~~~dva~~~~~ll~~~~~~~~G~~i~idgg~ 286 (290)
T PRK06701 248 ---------NTPMQRPGQPEELAPAYVFLASPDSSYITGQMLHVNGGV 286 (290)
T ss_pred ---------cCCcCCCcCHHHHHHHHHHHcCcccCCccCcEEEeCCCc
Confidence 11224578999999999999886432 244788887664
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=185.50 Aligned_cols=216 Identities=15% Similarity=0.129 Sum_probs=158.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+..+..+..+.+. . ..+.++.+|++|.+++.+++++
T Consensus 5 ~~~-k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (239)
T PRK12828 5 LQG-KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVP---A--DALRIGGIDLVDPQAARRAVDEVNR 78 (239)
T ss_pred CCC-CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHh---h--cCceEEEeecCCHHHHHHHHHHHHH
Confidence 345 899999999999999999999999999999876543333222222 1 3567888999999999887764
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+|||+||...... ..+.....++.|+.++.++++++ ++.+.+++|++||...++..
T Consensus 79 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 148 (239)
T PRK12828 79 QFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAG---------- 148 (239)
T ss_pred HhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCC----------
Confidence 47999999999754322 12223456778999987776665 45567899999998876532
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+...|+.+|.+.+.+++.++.+ .+++++++|||.++++.... ..+
T Consensus 149 -~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~--------------------------~~~---- 197 (239)
T PRK12828 149 -PGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRA--------------------------DMP---- 197 (239)
T ss_pred -CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhh--------------------------cCC----
Confidence 23678999999999999888765 58999999999999863110 000
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKG 338 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~ 338 (413)
......+++++|+|+++..++..... ..++.+++.+++.
T Consensus 198 ---------~~~~~~~~~~~dva~~~~~~l~~~~~~~~g~~~~~~g~~~ 237 (239)
T PRK12828 198 ---------DADFSRWVTPEQIAAVIAFLLSDEAQAITGASIPVDGGVA 237 (239)
T ss_pred ---------chhhhcCCCHHHHHHHHHHHhCcccccccceEEEecCCEe
Confidence 00112379999999999999885432 2457888877754
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=200.50 Aligned_cols=236 Identities=13% Similarity=0.112 Sum_probs=164.7
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhc----C--CCCceEEEEccCCCHHHHHHHh
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELF----P--EPGRLQFIYADLGDAKAVNKFF 141 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~--~~~~~~~~~~Dl~d~~~~~~~~ 141 (413)
++ |+||||||+|+||++++++|++.|++|++++|+..+...+.+.+.+.. + ...++.++.+|++|.+++.+++
T Consensus 79 ~g-KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DE-DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 45 899999999999999999999999999999876544333333322211 0 0135889999999999999988
Q ss_pred hcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhH
Q 015080 142 SENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYG 221 (413)
Q Consensus 142 ~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~ 221 (413)
.++|+||||||.... ...+....+++|+.++.++++++++.++++||++||.+++... ... ........|.
T Consensus 158 --ggiDiVVn~AG~~~~--~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g----~p~-~~~~sk~~~~ 228 (576)
T PLN03209 158 --GNASVVICCIGASEK--EVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVG----FPA-AILNLFWGVL 228 (576)
T ss_pred --cCCCEEEEccccccc--cccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccC----ccc-cchhhHHHHH
Confidence 789999999996532 1123456788999999999999999999999999997753110 000 0122345677
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCc
Q 015080 222 KAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGT 301 (413)
Q Consensus 222 ~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 301 (413)
.+|..+|..+.. .|+++++||||.++++..... . . . . +.+.. .+.
T Consensus 229 ~~KraaE~~L~~----sGIrvTIVRPG~L~tp~d~~~-----~-------t----------~--~-v~~~~------~d~ 273 (576)
T PLN03209 229 CWKRKAEEALIA----SGLPYTIVRPGGMERPTDAYK-----E-------T----------H--N-LTLSE------EDT 273 (576)
T ss_pred HHHHHHHHHHHH----cCCCEEEEECCeecCCccccc-----c-------c----------c--c-eeecc------ccc
Confidence 788888887765 799999999999998743200 0 0 0 0 11110 111
Q ss_pred eeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcc---cHHHHHHHH
Q 015080 302 CVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGR---SVKEFVEAC 348 (413)
Q Consensus 302 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~---s~~e~~~~i 348 (413)
.....+..+|+|+++++++.++....+++|.+.++... ++.++++.+
T Consensus 274 ~~gr~isreDVA~vVvfLasd~~as~~kvvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 274 LFGGQVSNLQVAELMACMAKNRRLSYCKVVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred cCCCccCHHHHHHHHHHHHcCchhccceEEEEEeCCCCCCCCHHHHHHhc
Confidence 11235889999999999998665444579999887644 455555444
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=188.69 Aligned_cols=200 Identities=19% Similarity=0.123 Sum_probs=147.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |++|||||||+||++++++|+++|++|++++|+... ..+...++ ..+.++.+|++|++++.++++.
T Consensus 3 ~~~-~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~---~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (273)
T PRK07825 3 LRG-KVVAITGGARGIGLATARALAALGARVAIGDLDEAL---AKETAAEL----GLVVGGPLDVTDPASFAAFLDAVEA 74 (273)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHh----ccceEEEccCCCHHHHHHHHHHHHH
Confidence 345 899999999999999999999999999998764332 22222222 2578899999999998877754
Q ss_pred --CCCcEEEEcCcccCccCCc----CChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+....... +.....+++|+.++.. +++.+.+.+.++||++||...+...
T Consensus 75 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 144 (273)
T PRK07825 75 DLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPV---------- 144 (273)
T ss_pred HcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCC----------
Confidence 5799999999986543322 2234578899988555 5666667778899999997765322
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+...|+.||++.+.+.+.++.+ .|+++++|+||.+-.+... ..+
T Consensus 145 -~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~---------------------------~~~---- 192 (273)
T PRK07825 145 -PGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIA---------------------------GTG---- 192 (273)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhc---------------------------ccc----
Confidence 23678999999999998888776 5899999999987654210 000
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP 325 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 325 (413)
......++.++|+|++++.++.++..
T Consensus 193 ---------~~~~~~~~~~~~va~~~~~~l~~~~~ 218 (273)
T PRK07825 193 ---------GAKGFKNVEPEDVAAAIVGTVAKPRP 218 (273)
T ss_pred ---------cccCCCCCCHHHHHHHHHHHHhCCCC
Confidence 00112468999999999999986543
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-22 Score=182.68 Aligned_cols=224 Identities=16% Similarity=0.107 Sum_probs=159.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+++||||+|+||+++++.|+++|++|++++|+.. +...+........+.++.++.+|++|.+++.++++. .+
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 80 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGN--DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGP 80 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 78999999999999999999999999999987643 222222222222235688999999999998887764 46
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHH----HHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVV----LESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~l----l~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||...... ..+..+..+++|+.++.++ ++.+++.+.++||++||...+.... ..
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~-----------~~ 149 (245)
T PRK12824 81 VDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKGQF-----------GQ 149 (245)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccCCC-----------CC
Confidence 999999999754322 2233455788999996665 5666666778999999977664322 25
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
..|+.+|++.+.+++.++.+ .|+++++++||.+.++... ...+..........+
T Consensus 150 ~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~---------------~~~~~~~~~~~~~~~-------- 206 (245)
T PRK12824 150 TNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVE---------------QMGPEVLQSIVNQIP-------- 206 (245)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchh---------------hcCHHHHHHHHhcCC--------
Confidence 67999999999999998765 5899999999999886421 111111222221111
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCc
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKG 338 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~ 338 (413)
...+...+|+++++..++... ..-.++++++.++..
T Consensus 207 --------~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~~~~g~~ 243 (245)
T PRK12824 207 --------MKRLGTPEEIAAAVAFLVSEAAGFITGETISINGGLY 243 (245)
T ss_pred --------CCCCCCHHHHHHHHHHHcCccccCccCcEEEECCCee
Confidence 123567899999998888642 223457999987754
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-22 Score=183.95 Aligned_cols=227 Identities=14% Similarity=0.121 Sum_probs=161.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+|+||.+++++|+++|++|++++|.....+.....++. .+.++.++.+|++|.+++.++++.
T Consensus 9 l~~-k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~i~~~~~~~~~ 84 (255)
T PRK06113 9 LDG-KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ---LGGQAFACRCDITSEQELSALADFALS 84 (255)
T ss_pred cCC-CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 446 9999999999999999999999999999988754433333333332 234688899999999999887654
Q ss_pred --CCCcEEEEcCcccCccCCc---CChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGEST---LDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~~---~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||...+.... ++.+..+++|+.++.++++++. +.+.++||++||..... +.
T Consensus 85 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-----------~~ 153 (255)
T PRK06113 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN-----------KN 153 (255)
T ss_pred HcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccC-----------CC
Confidence 5799999999975433222 3344468899999877777765 44557999999976532 22
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
.+...|+.+|++.+.+++.++.+ .|++++++.||.+..+.... .+.+.+........+
T Consensus 154 ~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~--------------~~~~~~~~~~~~~~~----- 214 (255)
T PRK06113 154 INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS--------------VITPEIEQKMLQHTP----- 214 (255)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeccccccccccc--------------ccCHHHHHHHHhcCC-----
Confidence 33668999999999999999876 68999999999988764210 111222222222111
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCc
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKG 338 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~ 338 (413)
...+...+|+++++..++..... -.++++++.++..
T Consensus 215 -----------~~~~~~~~d~a~~~~~l~~~~~~~~~G~~i~~~gg~~ 251 (255)
T PRK06113 215 -----------IRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGGV 251 (255)
T ss_pred -----------CCCCcCHHHHHHHHHHHcCccccCccCCEEEECCCcc
Confidence 12357889999999999874322 2457898877643
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=184.24 Aligned_cols=223 Identities=16% Similarity=0.174 Sum_probs=153.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
+++|||||+|+||.+++++|+++|++|+++++.. .+...+....+...+..+.++.+|++|.+++.++++. .+
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERGYAVCLNYLRN--RDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR 80 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEecCCC--HHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence 7899999999999999999999999988775432 2222222222222235688899999999999888764 47
Q ss_pred CcEEEEcCcccCccC-----CcCChHHHHHHHHHHHHHHHHHHHHc----C---CCEEEEecccee-cCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE-----STLDPLKYYHNITSNTLVVLESMARH----G---VDTLIYSSTCAT-YGEPEKMPITEET 212 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~~~----~---~~~iV~~SS~~~-~~~~~~~~~~e~~ 212 (413)
+|+||||||...... ..++....+++|+.++.++++++.+. . .+++|++||... ++...
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~-------- 152 (248)
T PRK06123 81 LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPG-------- 152 (248)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCCC--------
Confidence 999999999754321 22234467889999987776665432 1 357999999654 33211
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
....|+.+|++.+.+++.++.+ +|++++++||+.++||.... ...+..........+ +
T Consensus 153 ---~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~--------------~~~~~~~~~~~~~~p-~- 213 (248)
T PRK06123 153 ---EYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHAS--------------GGEPGRVDRVKAGIP-M- 213 (248)
T ss_pred ---CccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhc--------------cCCHHHHHHHHhcCC-C-
Confidence 1246999999999999999877 48999999999999985221 011112222222222 1
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
.-+.+++|++++++.++.... ...+++|++.++
T Consensus 214 --------------~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~gg 247 (248)
T PRK06123 214 --------------GRGGTAEEVARAILWLLSDEASYTTGTFIDVSGG 247 (248)
T ss_pred --------------CCCcCHHHHHHHHHHHhCccccCccCCEEeecCC
Confidence 123478999999999887542 224578998765
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-22 Score=189.51 Aligned_cols=187 Identities=13% Similarity=0.069 Sum_probs=138.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++.+ |+|+||||+||||.+++++|+++|++|++++|+..+.++..+.+..... +..+.++.+|++|.+++++++++
T Consensus 13 ~~~~-k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 13 DQSG-RVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATP-GADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred cCCC-CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCHHHHHHHHHHHH
Confidence 3556 8999999999999999999999999999998765443333333332222 24688999999999999888764
Q ss_pred ---CCCcEEEEcCcccCccC--CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceec--CCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE--STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATY--GEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~--~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~--~~~~~~~~~e~~ 212 (413)
.++|+||||||+..+.. ..+..+..+++|+.+ +..+++.+++.+.++||++||...+ +........++.
T Consensus 91 ~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~ 170 (306)
T PRK06197 91 AAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAIHFDDLQWER 170 (306)
T ss_pred hhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCCCccccCccc
Confidence 46999999999764432 234556789999999 7778888887777899999997644 322222222233
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEE--EeecceecCC
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMI--LRYFNVIGSD 254 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~--lrp~~v~G~~ 254 (413)
+..+..+|+.||++.+.+++.++.+ .|+++++ +.||.|..+.
T Consensus 171 ~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~ 217 (306)
T PRK06197 171 RYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTEL 217 (306)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcc
Confidence 4456778999999999999998877 4666654 4799987653
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=192.96 Aligned_cols=213 Identities=17% Similarity=0.142 Sum_probs=154.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+|+||||+|+||.+++++|+++|++|++++|+....++..+.+. ..+.++.++.+|++|.++++++++. .+
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~---~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~ 85 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIR---AAGGEALAVVADVADAEAVQAAADRAEEELGP 85 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---HcCCcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 899999999999999999999999999999875443333333333 2245788999999999999988754 57
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|++|||||...... ..++.+..+++|+.+ ++.+++.+++.+.++||++||...+...+ ..
T Consensus 86 iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~~-----------~~ 154 (334)
T PRK07109 86 IDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSIP-----------LQ 154 (334)
T ss_pred CCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCCC-----------cc
Confidence 999999999754332 222334567788776 55677778777778999999988774322 25
Q ss_pred ChhHHHHHHHHHHHHHHHhh-----CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 218 NPYGKAKKMAEDIILDFSKN-----SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
..|+.||++.+.+++.++.+ .++++++|+||.+.+|.. ....... ...
T Consensus 155 ~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~-------------------~~~~~~~-~~~------- 207 (334)
T PRK07109 155 SAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQF-------------------DWARSRL-PVE------- 207 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchh-------------------hhhhhhc-ccc-------
Confidence 78999999999999988766 369999999999877531 1110000 000
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecC
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGT 335 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~ 335 (413)
......++..+|+|++++.++.++. +.+.+++
T Consensus 208 -------~~~~~~~~~pe~vA~~i~~~~~~~~----~~~~vg~ 239 (334)
T PRK07109 208 -------PQPVPPIYQPEVVADAILYAAEHPR----RELWVGG 239 (334)
T ss_pred -------ccCCCCCCCHHHHHHHHHHHHhCCC----cEEEeCc
Confidence 0111245789999999999998642 3566754
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=184.99 Aligned_cols=224 Identities=14% Similarity=0.132 Sum_probs=155.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+++||++++++|+++|++|++++|.. .+...+.+++. +.++.++.+|++|++++++++++
T Consensus 6 l~~-k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~--~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12481 6 LNG-KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE--APETQAQVEAL---GRKFHFITADLIQQKDIDSIVSQAVE 79 (251)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch--HHHHHHHHHHc---CCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 446 8999999999999999999999999999987632 22233333332 35788999999999999988865
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHH----HHHHHHHcC-CCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLV----VLESMARHG-VDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~----ll~~~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.++.. +++.+++.+ .++||++||...+....
T Consensus 80 ~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~-------- 151 (251)
T PRK12481 80 VMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGI-------- 151 (251)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCCC--------
Confidence 57999999999764432 223445578899888554 445555543 47999999987664322
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
....|+.||++.+.+++.++.+ +|++++.|+||.+-.+..... . . ........... ++
T Consensus 152 ---~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~----~--------~-~~~~~~~~~~~---~p 212 (251)
T PRK12481 152 ---RVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAAL----R--------A-DTARNEAILER---IP 212 (251)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhc----c--------c-ChHHHHHHHhc---CC
Confidence 2457999999999999999887 689999999999876532100 0 0 00011111111 11
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTG 336 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~ 336 (413)
...+...+|+|+++.+++... ..-.+.++.+.+|
T Consensus 213 -------------~~~~~~peeva~~~~~L~s~~~~~~~G~~i~vdgg 247 (251)
T PRK12481 213 -------------ASRWGTPDDLAGPAIFLSSSASDYVTGYTLAVDGG 247 (251)
T ss_pred -------------CCCCcCHHHHHHHHHHHhCccccCcCCceEEECCC
Confidence 113578899999999988642 2234467777544
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=183.46 Aligned_cols=224 Identities=17% Similarity=0.113 Sum_probs=152.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-------
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE------- 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~------- 143 (413)
|+++||||+|+||.+++++|++.|++|++.++. +.+...+...++...+..+..+.+|+++.+++..++++
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGN--RKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN 82 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCC--CHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence 899999999999999999999999999886531 22222222222222235678899999999887765542
Q ss_pred ----CCCcEEEEcCcccCccCCcC----ChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGESTL----DPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~~~~----~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+.......+ ..+..+++|+.++..+++++... +.++||++||...+...
T Consensus 83 ~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~---------- 152 (252)
T PRK12747 83 RTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL---------- 152 (252)
T ss_pred hcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCC----------
Confidence 26999999999754332222 23556789999988777666543 23699999998765322
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+..+|+.||++.+.+++.++.+ .|+++++|.||.|.++...... . -+. ........
T Consensus 153 -~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~---~----------~~~-~~~~~~~~----- 212 (252)
T PRK12747 153 -PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELL---S----------DPM-MKQYATTI----- 212 (252)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhcc---c----------CHH-HHHHHHhc-----
Confidence 23578999999999999999887 5899999999999887421000 0 000 01111000
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
.....+.+++|+|+++.+++.... ...++.+.+.+|
T Consensus 213 ----------~~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~vdgg 249 (252)
T PRK12747 213 ----------SAFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGG 249 (252)
T ss_pred ----------CcccCCCCHHHHHHHHHHHcCccccCcCCcEEEecCC
Confidence 012346889999999999886432 223467777655
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=187.59 Aligned_cols=231 Identities=16% Similarity=0.130 Sum_probs=157.8
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++.+ |++|||||+|+||++++++|+++|++|++++|+.... +..+.+. ..+.++.++.+|+++++++.+++++
T Consensus 4 ~l~~-~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (258)
T PRK08628 4 NLKD-KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELR---ALQPRAEFVQVDLTDDAQCRDAVEQTV 78 (258)
T ss_pred CcCC-CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 4556 8999999999999999999999999999998755433 2223322 2245789999999999999888765
Q ss_pred ---CCCcEEEEcCcccCccCCc---CChHHHHHHHHHHHHHHHHHHHH---cCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGEST---LDPLKYYHNITSNTLVVLESMAR---HGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~~---~~~~~~~~~n~~~~~~ll~~~~~---~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||........ ++.+..+++|+.++..++..+.+ .+.++||++||...+.. .
T Consensus 79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~-----------~ 147 (258)
T PRK08628 79 AKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTG-----------Q 147 (258)
T ss_pred HhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccC-----------C
Confidence 4799999999964322222 33455788999987776666542 23479999999765422 2
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
.+...|+.||++.+.+++.++.+ .|++++.|+||.++++.........+ . .......+... ++
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~--------~-~~~~~~~~~~~---~~-- 213 (258)
T PRK08628 148 GGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFD--------D-PEAKLAAITAK---IP-- 213 (258)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhcc--------C-HHHHHHHHHhc---CC--
Confidence 23678999999999999999875 68999999999999874210000000 0 00011111111 11
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
.+ ..++..+|+|+++++++.... ...++.|.+.++
T Consensus 214 -------~~---~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg 249 (258)
T PRK08628 214 -------LG---HRMTTAEEIADTAVFLLSERSSHTTGQWLFVDGG 249 (258)
T ss_pred -------cc---ccCCCHHHHHHHHHHHhChhhccccCceEEecCC
Confidence 01 146889999999999987542 223467777554
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=187.52 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=130.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc------C
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE------N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~------~ 144 (413)
|+|+||||+|+||.+++++|+++|++|++++|+.... +.+.+ .+++++.+|++|.+++++++++ .
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~----~~l~~-----~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDV----AALEA-----EGLEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHH-----CCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 7999999999999999999999999999998754322 12221 3578899999999998887764 3
Q ss_pred CCcEEEEcCcccCccCCcC----ChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGESTL----DPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~~~----~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
++|+||||||+.......+ ..+..+++|+.| ++++++.+++.+.++||++||...+. +..+
T Consensus 76 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~-----------~~~~ 144 (277)
T PRK05993 76 RLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLV-----------PMKY 144 (277)
T ss_pred CccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcC-----------CCCc
Confidence 6899999999765443222 234578899999 77888989888888999999976542 2234
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
..+|+.||++.+.+++.++.+ .|+++++|+||.+-.+
T Consensus 145 ~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~ 184 (277)
T PRK05993 145 RGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETR 184 (277)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCc
Confidence 678999999999999998765 6999999999998765
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=187.99 Aligned_cols=169 Identities=15% Similarity=0.096 Sum_probs=129.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+||||||+|+||.++++.|+++|++|++++|+... ..+...++... .++.++.+|++|++++.+++++ ..
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~---~~~~~~~~~~~-~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~ 78 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDA---LQAFAARLPKA-ARVSVYAADVRDADALAAAAADFIAAHGL 78 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHhcccC-CeeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 799999999999999999999999999999875432 22222222222 2788999999999999887754 45
Q ss_pred CcEEEEcCcccCccCC-----cCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGES-----TLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~-----~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
+|+||||||+...... .+..+..+++|+.++.. +++.+++.+.++||++||...+... ..
T Consensus 79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~~-----------~~ 147 (257)
T PRK07024 79 PDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGL-----------PG 147 (257)
T ss_pred CCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCC-----------CC
Confidence 8999999997543221 13345678899999666 4557777777899999996654221 22
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
...|+.||++.+.+++.++.+ +|+++++++||.+.++.
T Consensus 148 ~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~ 188 (257)
T PRK07024 148 AGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPM 188 (257)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCch
Confidence 567999999999999998755 68999999999998763
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-22 Score=182.81 Aligned_cols=223 Identities=13% Similarity=0.118 Sum_probs=158.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ +++|||||+|+||.++++.|+++|++|++++|+..+.....+.+. ..+.++.++.+|+++.+++.++++.
T Consensus 3 ~~~-~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (253)
T PRK08217 3 LKD-KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECG---ALGTEVRGYAANVTDEEDVEATFAQIAE 78 (253)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 345 899999999999999999999999999999875433333333332 2245788999999999998877765
Q ss_pred --CCCcEEEEcCcccCccC-------------CcCChHHHHHHHHHHHHHHH----HHHHHc-CCCEEEEeccceecCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE-------------STLDPLKYYHNITSNTLVVL----ESMARH-GVDTLIYSSTCATYGEP 203 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~-------------~~~~~~~~~~~n~~~~~~ll----~~~~~~-~~~~iV~~SS~~~~~~~ 203 (413)
.++|+||||||...... ..+.....+++|+.++..++ +.+.+. ..+++|++||...++..
T Consensus 79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~~ 158 (253)
T PRK08217 79 DFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGNM 158 (253)
T ss_pred HcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCCC
Confidence 46899999999643211 11233456788999876544 455444 34689999998766432
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHH
Q 015080 204 EKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDA 280 (413)
Q Consensus 204 ~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (413)
+...|+.+|++.+.+++.++.+ .|++++.++||.+.++... ...+.....
T Consensus 159 ------------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~---------------~~~~~~~~~ 211 (253)
T PRK08217 159 ------------GQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTA---------------AMKPEALER 211 (253)
T ss_pred ------------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccc---------------ccCHHHHHH
Confidence 2578999999999999999876 6899999999999887532 112222222
Q ss_pred HhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCC
Q 015080 281 ARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGK 337 (413)
Q Consensus 281 ~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~ 337 (413)
.....+ ...+.+++|+|+++..++... ...+++|++.++.
T Consensus 212 ~~~~~~----------------~~~~~~~~~~a~~~~~l~~~~-~~~g~~~~~~gg~ 251 (253)
T PRK08217 212 LEKMIP----------------VGRLGEPEEIAHTVRFIIEND-YVTGRVLEIDGGL 251 (253)
T ss_pred HHhcCC----------------cCCCcCHHHHHHHHHHHHcCC-CcCCcEEEeCCCc
Confidence 222211 124678999999999998643 3355799997764
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-22 Score=182.15 Aligned_cols=225 Identities=16% Similarity=0.136 Sum_probs=159.5
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
.+ |+++||||+|+||++++++|+++|++|++++|+........+.++ ..+.++.++.+|++|++++.++++.
T Consensus 6 ~~-~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 6 AG-KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALE---AAGGRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CC-CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35 899999999999999999999999999998765433333333332 2235789999999999999888765
Q ss_pred -CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||....... .+..+..++.|+.++.++++++. +.+.+++|++||...+...
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 150 (250)
T PRK12939 82 LGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGA----------- 150 (250)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCC-----------
Confidence 579999999997544321 22334567899999877766654 4446799999996654322
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
.....|+.+|++.+.+++.++.+ .++++++++||.+.++..... ............
T Consensus 151 ~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~--------------~~~~~~~~~~~~------- 209 (250)
T PRK12939 151 PKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYV--------------PADERHAYYLKG------- 209 (250)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCcccccc--------------CChHHHHHHHhc-------
Confidence 22567999999999999988766 589999999999877642100 000111111111
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
.....+++++|+|++++.++.... ...++.+.+.++.
T Consensus 210 ---------~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg~ 247 (250)
T PRK12939 210 ---------RALERLQVPDDVAGAVLFLLSDAARFVTGQLLPVNGGF 247 (250)
T ss_pred ---------CCCCCCCCHHHHHHHHHHHhCccccCccCcEEEECCCc
Confidence 122457899999999999997542 2245788887664
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-22 Score=183.67 Aligned_cols=170 Identities=17% Similarity=0.168 Sum_probs=131.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+|+||||+|+||++++++|+++|++|++++|.....++..+.++ ..+.++.++.+|++|++++.++++. .+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 77 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLR---EAGGDGFYQRCDVRDYSQLTALAQACEEKWGG 77 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 479999999999999999999999999999875443333333332 2245788999999999998887754 47
Q ss_pred CcEEEEcCcccCccCCcC----ChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGESTL----DPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~----~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||+.......+ +.+..+++|+.++.. +++.+++.+.++||++||...+... ...
T Consensus 78 id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~-----------~~~ 146 (270)
T PRK05650 78 IDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQG-----------PAM 146 (270)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCCC-----------CCc
Confidence 999999999865433222 233467789877544 6666777777899999997765432 236
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
..|+.+|++.+.+++.++.+ .|+++++++||.+.++.
T Consensus 147 ~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~ 186 (270)
T PRK05650 147 SSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNL 186 (270)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCc
Confidence 78999999999999999887 58999999999998764
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-23 Score=180.58 Aligned_cols=238 Identities=18% Similarity=0.195 Sum_probs=189.2
Q ss_pred CCCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcC
Q 015080 65 QHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSEN 144 (413)
Q Consensus 65 ~~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 144 (413)
....| -.+-|.|||||+|+.++.+|++.|.+|++-.|-.+..-...+...++ +++-+...|+.|++++++++ .
T Consensus 57 sS~sG-iVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r~lkvmGdL----GQvl~~~fd~~DedSIr~vv--k 129 (391)
T KOG2865|consen 57 SSVSG-IVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLKVMGDL----GQVLFMKFDLRDEDSIRAVV--K 129 (391)
T ss_pred ccccc-eEEEEecccccccHHHHHHHhhcCCeEEEeccCCccchhheeecccc----cceeeeccCCCCHHHHHHHH--H
Confidence 34556 77889999999999999999999999999887655444344444333 68999999999999999999 5
Q ss_pred CCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHH
Q 015080 145 AFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAK 224 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK 224 (413)
.-.+|||+.|-- .+...-.+.++|+.+.+.+...|++.|+.++|++|+...- ....+-|-.+|
T Consensus 130 ~sNVVINLIGrd----~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~Lgan-------------v~s~Sr~LrsK 192 (391)
T KOG2865|consen 130 HSNVVINLIGRD----YETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCLGAN-------------VKSPSRMLRSK 192 (391)
T ss_pred hCcEEEEeeccc----cccCCcccccccchHHHHHHHHHHhhChhheeehhhcccc-------------ccChHHHHHhh
Confidence 678999999842 1222345678999999999999999999999999996521 12245689999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCC-cee
Q 015080 225 KMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG-TCV 303 (413)
Q Consensus 225 ~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~-~~~ 303 (413)
+++|..+++.-- ..+|+||..|||..+ +++......-++... +++.+ .| +..
T Consensus 193 ~~gE~aVrdafP----eAtIirPa~iyG~eD----------------rfln~ya~~~rk~~~-~pL~~------~GekT~ 245 (391)
T KOG2865|consen 193 AAGEEAVRDAFP----EATIIRPADIYGTED----------------RFLNYYASFWRKFGF-LPLIG------KGEKTV 245 (391)
T ss_pred hhhHHHHHhhCC----cceeechhhhcccch----------------hHHHHHHHHHHhcCc-eeeec------CCccee
Confidence 999999988644 489999999999764 566655555554444 77776 44 456
Q ss_pred eecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCC
Q 015080 304 RDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSA 354 (413)
Q Consensus 304 ~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~ 354 (413)
-..|||-|+|.+|+.+++.+.. .+++|.+++++.++..|+++.+.+....
T Consensus 246 K~PVyV~DVaa~IvnAvkDp~s-~Gktye~vGP~~yql~eLvd~my~~~~~ 295 (391)
T KOG2865|consen 246 KQPVYVVDVAAAIVNAVKDPDS-MGKTYEFVGPDRYQLSELVDIMYDMARE 295 (391)
T ss_pred eccEEEehHHHHHHHhccCccc-cCceeeecCCchhhHHHHHHHHHHHHhh
Confidence 7889999999999999998755 4689999999999999999999877654
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=192.13 Aligned_cols=173 Identities=13% Similarity=0.113 Sum_probs=134.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||||+||++++++|+++|++|++++|+....++..+.+++ .+.++.++.+|++|.+++++++++
T Consensus 5 l~~-k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~---~g~~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (330)
T PRK06139 5 LHG-AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA---LGAEVLVVPTDVTDADQVKALATQAAS 80 (330)
T ss_pred CCC-CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 345 8999999999999999999999999999998765443333333332 245788899999999999988764
Q ss_pred --CCCcEEEEcCcccCccCCcC----ChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGESTL----DPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~~~----~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|++|||||+.......+ +.+..+++|+.++.+ +++.+++.+.++||++||...+...+
T Consensus 81 ~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~p--------- 151 (330)
T PRK06139 81 FGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQP--------- 151 (330)
T ss_pred hcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCCC---------
Confidence 57999999999765443322 334578899998555 55666676678999999977653322
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh----CCCcEEEEeecceecCC
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN----SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~G~~ 254 (413)
....|+.||++.+.+++.++.| .|++++.+.||.+.+|.
T Consensus 152 --~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~ 194 (330)
T PRK06139 152 --YAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPG 194 (330)
T ss_pred --CchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcc
Confidence 2578999999999999988877 37999999999998874
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-22 Score=183.24 Aligned_cols=227 Identities=15% Similarity=0.081 Sum_probs=159.8
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+++ |+++||||+|+||++++++|+++|++|++++|+........+.++ ..+.++.++.+|++|++++.+++++
T Consensus 8 ~~~~-k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (256)
T PRK06124 8 SLAG-QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALR---AAGGAAEALAFDIADEEAVAAAFARID 83 (256)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 3456 999999999999999999999999999999875433233333332 2245688999999999999887764
Q ss_pred ---CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHH----HHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVL----ESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll----~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||....... .++.+..+++|+.++..++ +.+.+.+.+++|++||...+....
T Consensus 84 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~-------- 155 (256)
T PRK06124 84 AEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVARA-------- 155 (256)
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccCCC--------
Confidence 468999999997543222 2334457889999877666 555556778999999976543222
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
...+|+.+|.+.+.+++.++.+ .|+++++|+||.+.++..... ..............+
T Consensus 156 ---~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~-------------~~~~~~~~~~~~~~~--- 216 (256)
T PRK06124 156 ---GDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAM-------------AADPAVGPWLAQRTP--- 216 (256)
T ss_pred ---CccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhh-------------ccChHHHHHHHhcCC---
Confidence 2578999999999999998877 589999999999998752110 000111112221111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTG 336 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~ 336 (413)
...+++++|++++++.++..... ..++.+.+.++
T Consensus 217 -------------~~~~~~~~~~a~~~~~l~~~~~~~~~G~~i~~dgg 251 (256)
T PRK06124 217 -------------LGRWGRPEEIAGAAVFLASPAASYVNGHVLAVDGG 251 (256)
T ss_pred -------------CCCCCCHHHHHHHHHHHcCcccCCcCCCEEEECCC
Confidence 12478999999999999986533 23456666544
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=182.56 Aligned_cols=222 Identities=17% Similarity=0.139 Sum_probs=157.5
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-CC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-NA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~ 145 (413)
+.+ |+++||||+|+||.++++.|+++|++|++++|+... ..+.... .++.++.+|++|.+++.++++. .+
T Consensus 7 ~~~-~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~---~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~ 77 (245)
T PRK07060 7 FSG-KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAA---LDRLAGE-----TGCEPLRLDVGDDAAIRAALAAAGA 77 (245)
T ss_pred cCC-CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHH-----hCCeEEEecCCCHHHHHHHHHHhCC
Confidence 445 899999999999999999999999999999875322 2221111 2467889999999999988865 46
Q ss_pred CcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHHc----C-CCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMARH----G-VDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
+|+||||||....... .++.+..+++|+.++.++++++.+. + .++||++||...+... .+
T Consensus 78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------~~ 146 (245)
T PRK07060 78 FDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGL-----------PD 146 (245)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCC-----------CC
Confidence 8999999997543221 2234456779999988877776542 2 3799999997765432 23
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
...|+.+|.+++.+++.++.+ .|++++.++||.++++.....+. . +.........
T Consensus 147 ~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~-----------~--~~~~~~~~~~--------- 204 (245)
T PRK07060 147 HLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWS-----------D--PQKSGPMLAA--------- 204 (245)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhcc-----------C--HHHHHHHHhc---------
Confidence 568999999999999999876 58999999999999875321110 0 0001111111
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
.....+++++|+|++++.++.... ...++.+++.+|.
T Consensus 205 -------~~~~~~~~~~d~a~~~~~l~~~~~~~~~G~~~~~~~g~ 242 (245)
T PRK07060 205 -------IPLGRFAEVDDVAAPILFLLSDAASMVSGVSLPVDGGY 242 (245)
T ss_pred -------CCCCCCCCHHHHHHHHHHHcCcccCCccCcEEeECCCc
Confidence 112358999999999999997543 2245788887653
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-22 Score=186.07 Aligned_cols=231 Identities=14% Similarity=0.103 Sum_probs=159.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+++||||+|+||++++++|+++|++|++++|+....+...+.+. ..+.++.++++|++|.+++.++++.
T Consensus 8 ~~~-k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (278)
T PRK08277 8 LKG-KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIK---AAGGEALAVKADVLDKESLEQARQQILE 83 (278)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 345 899999999999999999999999999999875433333333332 2235688999999999998887754
Q ss_pred --CCCcEEEEcCcccCccC-------------------CcCChHHHHHHHHHHHH----HHHHHHHHcCCCEEEEeccce
Q 015080 144 --NAFDAVMHFAAVAYVGE-------------------STLDPLKYYHNITSNTL----VVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~-------------------~~~~~~~~~~~n~~~~~----~ll~~~~~~~~~~iV~~SS~~ 198 (413)
.++|+||||||...+.. ..++....+++|+.++. .+++.+++.+.++||++||..
T Consensus 84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~ 163 (278)
T PRK08277 84 DFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMN 163 (278)
T ss_pred HcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccch
Confidence 57999999999653321 12234456788998865 556666666678999999987
Q ss_pred ecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHH
Q 015080 199 TYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISG 275 (413)
Q Consensus 199 ~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 275 (413)
.+.. ..+...|+.||++.+.+++.++.+ .|+++++|+||.|.++.......... ....
T Consensus 164 ~~~~-----------~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~--------~~~~ 224 (278)
T PRK08277 164 AFTP-----------LTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNED--------GSLT 224 (278)
T ss_pred hcCC-----------CCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhcccc--------ccch
Confidence 7643 233678999999999999999888 48999999999999874221000000 0000
Q ss_pred HHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHh-cC-CCCccEEEecCC
Q 015080 276 ACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALER-AQ-PKKVGIYNVGTG 336 (413)
Q Consensus 276 ~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~-~~-~~~~~~yni~~~ 336 (413)
.......... ....+...+|+|+++++++.. .. .-.+.++.+.+|
T Consensus 225 ~~~~~~~~~~----------------p~~r~~~~~dva~~~~~l~s~~~~~~~tG~~i~vdgG 271 (278)
T PRK08277 225 ERANKILAHT----------------PMGRFGKPEELLGTLLWLADEKASSFVTGVVLPVDGG 271 (278)
T ss_pred hHHHHHhccC----------------CccCCCCHHHHHHHHHHHcCccccCCcCCCEEEECCC
Confidence 1111111111 112467789999999998875 22 224567777655
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=183.27 Aligned_cols=226 Identities=15% Similarity=0.083 Sum_probs=157.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||.+++++|+++|++|++++|+.....+..+.+. ..+.++.++.+|++|.+++.++++.
T Consensus 7 l~~-k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (254)
T PRK08085 7 LAG-KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLR---QEGIKAHAAPFNVTHKQEVEAAIEHIEK 82 (254)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHH---hcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 345 899999999999999999999999999999875433333333332 2234678899999999999887754
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||...... ..++.+..+++|+.++..+++++ .+.+.++||++||..... +
T Consensus 83 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-----------~ 151 (254)
T PRK08085 83 DIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSEL-----------G 151 (254)
T ss_pred hcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhcc-----------C
Confidence 56999999999754322 22334457889999966655554 445568999999965432 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
..+...|+.+|++.+.+++.++.+ .|+++++|+||.+.++...... . .+..........+
T Consensus 152 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~------------~-~~~~~~~~~~~~p---- 214 (254)
T PRK08085 152 RDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALV------------E-DEAFTAWLCKRTP---- 214 (254)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhc------------c-CHHHHHHHHhcCC----
Confidence 223568999999999999999887 5899999999999887422100 0 0112222222111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
...+...+|+++++..++.... .-.+.+..+.+|
T Consensus 215 ------------~~~~~~~~~va~~~~~l~~~~~~~i~G~~i~~dgg 249 (254)
T PRK08085 215 ------------AARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGG 249 (254)
T ss_pred ------------CCCCcCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence 1246788999999999887533 223456666554
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-22 Score=182.98 Aligned_cols=227 Identities=15% Similarity=0.084 Sum_probs=158.0
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++.+ |+++||||+|+||.+++++|+++|++|+++++.. +...+.+.. .++.++.+|++|++++.++++.
T Consensus 4 ~l~~-k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~---~~~~~~l~~-----~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (255)
T PRK06463 4 RFKG-KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA---ENEAKELRE-----KGVFTIKCDVGNRDQVKKSKEVVE 74 (255)
T ss_pred CcCC-CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc---HHHHHHHHh-----CCCeEEEecCCCHHHHHHHHHHHH
Confidence 3456 8999999999999999999999999998876432 222223322 2478899999999999888765
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.+ ++.+++.+++.+.++||++||...++..
T Consensus 75 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~--------- 145 (255)
T PRK06463 75 KEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTA--------- 145 (255)
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCC---------
Confidence 47999999999754322 223345578899999 5667777776667899999998776421
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
..+...|+.||++.+.+++.++.+ .|+++++++||.+-.+...... .+ .-............
T Consensus 146 -~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~----~~------~~~~~~~~~~~~~~---- 210 (255)
T PRK06463 146 -AEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGK----SQ------EEAEKLRELFRNKT---- 210 (255)
T ss_pred -CCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhccc----Cc------cchHHHHHHHHhCC----
Confidence 122567999999999999999877 5899999999998655311000 00 00111111111111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
....+...+|++++++.++.... ...+..+.+.+|.
T Consensus 211 ------------~~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg~ 247 (255)
T PRK06463 211 ------------VLKTTGKPEDIANIVLFLASDDARYITGQVIVADGGR 247 (255)
T ss_pred ------------CcCCCcCHHHHHHHHHHHcChhhcCCCCCEEEECCCe
Confidence 12345789999999999887543 2345788886654
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-22 Score=182.72 Aligned_cols=228 Identities=16% Similarity=0.154 Sum_probs=160.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+++||||+|+||.+++++|+++|++|++++|+....++..+.+++ .+.++.++.+|++|.+++.+++++
T Consensus 5 l~~-k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~i~~~~~~~~~ 80 (253)
T PRK06172 5 FSG-KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIRE---AGGEALFVACDVTRDAEVKALVEQTIA 80 (253)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 445 8999999999999999999999999999998765443333333332 245688999999999999887754
Q ss_pred --CCCcEEEEcCcccCccC-----CcCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE-----STLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~-----~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||...... ..++.+..+++|+.++.. +++.+.+.+.+++|++||...+....
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~-------- 152 (253)
T PRK06172 81 AYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAAP-------- 152 (253)
T ss_pred HhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCC--------
Confidence 47899999999753221 223445578899998654 45566666678999999987664332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
+...|+.+|++.+.+++.++.+ .|+++++++||.|-.+...... ...+..........+
T Consensus 153 ---~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~------------~~~~~~~~~~~~~~~--- 214 (253)
T PRK06172 153 ---KMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAY------------EADPRKAEFAAAMHP--- 214 (253)
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhc------------ccChHHHHHHhccCC---
Confidence 3678999999999999999887 4799999999998765321100 000111111111111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~ 337 (413)
...+...+|+++.+++++... ..-.++.+.+.+|.
T Consensus 215 -------------~~~~~~p~~ia~~~~~l~~~~~~~~~G~~i~~dgg~ 250 (253)
T PRK06172 215 -------------VGRIGKVEEVASAVLYLCSDGASFTTGHALMVDGGA 250 (253)
T ss_pred -------------CCCccCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 123568899999999998753 22345788886654
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-22 Score=181.58 Aligned_cols=228 Identities=14% Similarity=0.085 Sum_probs=157.8
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+... ...+..+++...+.++.++.+|++|++++.+++++
T Consensus 6 ~~~-k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~--~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 82 (254)
T PRK06114 6 LDG-QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDD--GLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEA 82 (254)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcch--HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 446 899999999999999999999999999999875432 12222222222245688899999999999887765
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..++.+..+++|+.++.. +++.+++.+.++||++||.+.+....
T Consensus 83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~--------- 153 (254)
T PRK06114 83 ELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNR--------- 153 (254)
T ss_pred HcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCC---------
Confidence 56899999999865432 223345568899998644 55556666678999999976542211
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
..+...|+.+|++.+.+++.++.+ .|+++++++||.+.++.... + .... .........+
T Consensus 154 ~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~-------~------~~~~-~~~~~~~~~p---- 215 (254)
T PRK06114 154 GLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTR-------P------EMVH-QTKLFEEQTP---- 215 (254)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCccccc-------c------cchH-HHHHHHhcCC----
Confidence 112467999999999999999876 68999999999998864210 0 1111 1111111111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTG 336 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~ 336 (413)
...+..++|+++++++++... ..-.++++.+.+|
T Consensus 216 ------------~~r~~~~~dva~~~~~l~s~~~~~~tG~~i~~dgg 250 (254)
T PRK06114 216 ------------MQRMAKVDEMVGPAVFLLSDAASFCTGVDLLVDGG 250 (254)
T ss_pred ------------CCCCcCHHHHHHHHHHHcCccccCcCCceEEECcC
Confidence 123567899999999988643 2234567777655
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-22 Score=184.82 Aligned_cols=175 Identities=18% Similarity=0.127 Sum_probs=133.8
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |+++||||+|+||.+++++|+++|++|++++|+..+.++..+.+.+..+ +.++.++.+|++|.+++.+++++
T Consensus 6 l~~-k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T PRK07062 6 LEG-RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFP-GARLLAARCDVLDEADVAAFAAAVEA 83 (265)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCC-CceEEEEEecCCCHHHHHHHHHHHHH
Confidence 456 8999999999999999999999999999998865544444444433221 14688899999999999887764
Q ss_pred --CCCcEEEEcCcccCccCCc----CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||........ +.....+++|+.+ ++.+++.+++.+.++||++||...+...
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 153 (265)
T PRK07062 84 RFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPE---------- 153 (265)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCC----------
Confidence 5799999999975433222 2334467778777 5566677777667899999997765322
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
.....|+.+|++.+.+++.++.+ .|+++++++||.|..+.
T Consensus 154 -~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~ 196 (265)
T PRK07062 154 -PHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQ 196 (265)
T ss_pred -CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccch
Confidence 22568999999999999998877 68999999999987753
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-22 Score=181.51 Aligned_cols=227 Identities=15% Similarity=0.134 Sum_probs=158.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+. .. ..+..+.++++|++|.+++.+++++
T Consensus 5 ~~~~-k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---------~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (252)
T PRK08220 5 DFSG-KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---------LT---QEDYPFATFVLDVSDAAAVAQVCQRLL 71 (252)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch---------hh---hcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 3445 8999999999999999999999999999998754 11 1135688999999999999988765
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||...... ..++....+++|+.++..+++++ ++.+.++||++||.....
T Consensus 72 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~----------- 140 (252)
T PRK08220 72 AETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHV----------- 140 (252)
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhcc-----------
Confidence 56899999999764432 22345567889999977766665 445667999999965432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
+..+...|+.+|++.+.+++.++.+ +|+++++++||.++++....... .+... .............
T Consensus 141 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~-~~~~~----~~~~~~~~~~~~~------ 209 (252)
T PRK08220 141 PRIGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWV-DEDGE----QQVIAGFPEQFKL------ 209 (252)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhcc-chhhh----hhhhhhHHHHHhh------
Confidence 2234678999999999999999887 78999999999999985321100 00000 0000000111111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~ 337 (413)
......+++++|+|++++.++... ....+++..+.+|.
T Consensus 210 ----------~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~i~~~gg~ 248 (252)
T PRK08220 210 ----------GIPLGKIARPQEIANAVLFLASDLASHITLQDIVVDGGA 248 (252)
T ss_pred ----------cCCCcccCCHHHHHHHHHHHhcchhcCccCcEEEECCCe
Confidence 112246799999999999988643 22334566665553
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=185.71 Aligned_cols=235 Identities=15% Similarity=0.081 Sum_probs=156.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC-CchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG-NIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
+++ |++|||||+|+||.++++.|+++|++|+++++.... .+...+..+++...+.++.++++|++|++++++++++
T Consensus 6 l~~-k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 6 LKG-KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CCC-cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHH
Confidence 345 899999999999999999999999997777654432 2333333333322235788999999999999988765
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||...... ..++.+..+++|+.++..+++++... ..+++++++|+.+... .
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~-----------~ 153 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAF-----------T 153 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhccc-----------C
Confidence 57999999999754322 22335567889999988888887653 2356777643322211 1
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
.....|+.||++.+.+++.++.+ .|+++++++||.+.++...+.. . +........ .. .
T Consensus 154 ~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~----~----------~~~~~~~~~-~~----~ 214 (257)
T PRK12744 154 PFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQE----G----------AEAVAYHKT-AA----A 214 (257)
T ss_pred CCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhcccc----c----------cchhhcccc-cc----c
Confidence 12568999999999999999988 4799999999999876321100 0 000000000 00 0
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCc
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKG 338 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~ 338 (413)
. .......+.+++|+|+++..++.......++++++.++..
T Consensus 215 ~------~~~~~~~~~~~~dva~~~~~l~~~~~~~~g~~~~~~gg~~ 255 (257)
T PRK12744 215 L------SPFSKTGLTDIEDIVPFIRFLVTDGWWITGQTILINGGYT 255 (257)
T ss_pred c------cccccCCCCCHHHHHHHHHHhhcccceeecceEeecCCcc
Confidence 0 1111124789999999999999853222357898876643
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-22 Score=183.53 Aligned_cols=225 Identities=12% Similarity=0.058 Sum_probs=154.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |++|||||+|+||.+++++|+++|++|++++|+.... ..+.++.+|++|++++++++++
T Consensus 4 l~g-k~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~--------------~~~~~~~~D~~~~~~i~~~~~~~~~ 68 (258)
T PRK06398 4 LKD-KVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY--------------NDVDYFKVDVSNKEQVIKGIDYVIS 68 (258)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc--------------CceEEEEccCCCHHHHHHHHHHHHH
Confidence 446 8999999999999999999999999999998754321 3578899999999999888765
Q ss_pred --CCCcEEEEcCcccCccCCc----CChHHHHHHHHHHHHHHH----HHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLVVL----ESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~ll----~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+....... ++.+..+++|+.++..++ +.+++.+.++||++||...+..
T Consensus 69 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 137 (258)
T PRK06398 69 KYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAV----------- 137 (258)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccC-----------
Confidence 4799999999985433322 223446789999966554 4455556789999999776532
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKNS--DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
..+..+|+.||++.+.+++.++.+. ++++++|+||.+-.+........ .. +.-...........
T Consensus 138 ~~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~-~~------~~~~~~~~~~~~~~------- 203 (258)
T PRK06398 138 TRNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAEL-EV------GKDPEHVERKIREW------- 203 (258)
T ss_pred CCCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhc-cc------cCChhhhHHHHHhh-------
Confidence 2336789999999999999998873 49999999999876532100000 00 00000000000000
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
+ .......+..++|+|+++++++.... ...++++.+.+|.
T Consensus 204 ~------~~~~~~~~~~p~eva~~~~~l~s~~~~~~~G~~i~~dgg~ 244 (258)
T PRK06398 204 G------EMHPMKRVGKPEEVAYVVAFLASDLASFITGECVTVDGGL 244 (258)
T ss_pred h------hcCCcCCCcCHHHHHHHHHHHcCcccCCCCCcEEEECCcc
Confidence 0 01112246789999999999887432 2245677776664
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=184.91 Aligned_cols=209 Identities=13% Similarity=0.109 Sum_probs=151.6
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
|++||||||+|+||++++++|+++|++|++++|+....+...+.++ ..+.++.++.+|++|.+++.++++. .
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELA---DHGGEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3789999999999999999999999999999875433332332232 2345788999999999999888764 3
Q ss_pred CCcEEEEcCcccCccCCcCC-----hHHHHHHHHHHHHHHHHHHHH---cCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGESTLD-----PLKYYHNITSNTLVVLESMAR---HGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~~~~-----~~~~~~~n~~~~~~ll~~~~~---~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
++|+||||||........+. ....+++|+.++.++++.+.. .+.+++|++||...+... .+
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------~~ 146 (263)
T PRK06181 78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTGV-----------PT 146 (263)
T ss_pred CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCCC-----------CC
Confidence 79999999997654332222 345688999998888887753 235799999997766432 23
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
...|+.+|.+.+.+++.++.+ .++++++++||.+..+.... ... ..+.+ .. .
T Consensus 147 ~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~-------------------~~~--~~~~~-~~--~- 201 (263)
T PRK06181 147 RSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKR-------------------ALD--GDGKP-LG--K- 201 (263)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchh-------------------hcc--ccccc-cc--c-
Confidence 678999999999999888765 68999999999988763210 000 00111 00 0
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHh
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALER 322 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 322 (413)
.+....++++++|+|++++.++..
T Consensus 202 -----~~~~~~~~~~~~dva~~i~~~~~~ 225 (263)
T PRK06181 202 -----SPMQESKIMSAEECAEAILPAIAR 225 (263)
T ss_pred -----ccccccCCCCHHHHHHHHHHHhhC
Confidence 122224789999999999999985
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=182.14 Aligned_cols=163 Identities=17% Similarity=0.188 Sum_probs=130.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
++|+||||+|+||++++++|+++|++|++++|+..+... ..++.++++|++|+++++++++. .+
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~-----------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 73 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP-----------IPGVELLELDVTDDASVQAAVDEVIARAGR 73 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc-----------cCCCeeEEeecCCHHHHHHHHHHHHHhCCC
Confidence 789999999999999999999999999999875432210 14688999999999999988865 46
Q ss_pred CcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||+...... .++.+..+++|+.++.+++.. +++.+.++||++||...+.... ..
T Consensus 74 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~-----------~~ 142 (270)
T PRK06179 74 IDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLPAP-----------YM 142 (270)
T ss_pred CCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCCCC-----------Cc
Confidence 9999999998654332 223456788999986665554 6677788999999976654322 25
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCC
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDP 255 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~ 255 (413)
..|+.||++.+.+++.++.+ .|+++++++||.+.++..
T Consensus 143 ~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~ 183 (270)
T PRK06179 143 ALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFD 183 (270)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccc
Confidence 68999999999999998776 699999999999988753
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-22 Score=182.15 Aligned_cols=226 Identities=16% Similarity=0.154 Sum_probs=156.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |++|||||+|+||.+++++|+++|++|++++|+..+.+...+.+.+ .+..+.++++|+++.+++++++++
T Consensus 6 l~~-k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (252)
T PRK07035 6 LTG-KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVA---AGGKAEALACHIGEMEQIDALFAHIRE 81 (252)
T ss_pred cCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 445 8999999999999999999999999999998754433333333322 234678899999999998877765
Q ss_pred --CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHHH----HHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVVL----ESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~ll----~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||.... .. ..++.+..+++|+.++..++ +.+++.+.+++|++||...+.
T Consensus 82 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 150 (252)
T PRK07035 82 RHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVS----------- 150 (252)
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcC-----------
Confidence 469999999996421 11 22234457889999966554 555666678999999965432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
+..+...|+.||++.+.+++.++.+ .|++++.+.||.+..+...... -............+
T Consensus 151 ~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~-------------~~~~~~~~~~~~~~--- 214 (252)
T PRK07035 151 PGDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALF-------------KNDAILKQALAHIP--- 214 (252)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCccccccc-------------CCHHHHHHHHccCC---
Confidence 2233678999999999999999877 5899999999998765321100 00111111111111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTG 336 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~ 336 (413)
...+...+|+|+++..++..... ..++++++.++
T Consensus 215 -------------~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~dgg 249 (252)
T PRK07035 215 -------------LRRHAEPSEMAGAVLYLASDASSYTTGECLNVDGG 249 (252)
T ss_pred -------------CCCcCCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 12356789999999998875432 34567777544
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=190.81 Aligned_cols=185 Identities=15% Similarity=0.105 Sum_probs=140.7
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |+++||||+++||.+++++|+++|++|++++|+..+.++..+.+.+..+ +..+.++.+|++|.+++++++++
T Consensus 11 ~l~g-k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 11 DLSG-KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVP-DAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred ccCC-CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCceEEEEecCCCHHHHHHHHHHHH
Confidence 3556 9999999999999999999999999999998865544444444443322 24688999999999999988765
Q ss_pred ---CCCcEEEEcCcccCccC---CcCChHHHHHHHHHHHH----HHHHHHHHcCCCEEEEeccceec-CCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE---STLDPLKYYHNITSNTL----VVLESMARHGVDTLIYSSTCATY-GEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~---~~~~~~~~~~~n~~~~~----~ll~~~~~~~~~~iV~~SS~~~~-~~~~~~~~~e~~ 212 (413)
.++|+||||||+...+. ..+..+..+++|+.+.. .+++.+++. .++||++||...+ +.....+..++.
T Consensus 89 ~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~-~~riv~vsS~~~~~~~~~~~~~~~~~ 167 (313)
T PRK05854 89 AEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG-RARVTSQSSIAARRGAINWDDLNWER 167 (313)
T ss_pred HhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC-CCCeEEEechhhcCCCcCcccccccc
Confidence 56999999999865422 34567778999999944 455555544 4699999997654 333333344444
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh-----CCCcEEEEeecceecC
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN-----SDMAVMILRYFNVIGS 253 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~lrp~~v~G~ 253 (413)
+..+...|+.||++.+.++++++.+ .|++++++.||.|-.+
T Consensus 168 ~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~ 213 (313)
T PRK05854 168 SYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTN 213 (313)
T ss_pred cCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccC
Confidence 5566788999999999999999763 4799999999998765
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=179.59 Aligned_cols=222 Identities=17% Similarity=0.131 Sum_probs=154.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+++||||+|+||++++++|+++|++|++..+. ......+.+.++...+..+..+.+|++|.+++.+++++ .+
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGP--NSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE 81 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC--ChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999999885431 22222333333322335677889999999999887764 57
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||...... ..++.+..+++|+.+ ++.+++.+++.+.++||++||...... ..+.
T Consensus 82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~-----------~~~~ 150 (246)
T PRK12938 82 IDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKG-----------QFGQ 150 (246)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccCC-----------CCCC
Confidence 999999999754221 223445678899998 445666666677789999999654321 2236
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
..|+.+|++.+.+++.++++ .|+++++++||.+.+|... ...+..........+
T Consensus 151 ~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~---------------~~~~~~~~~~~~~~~-------- 207 (246)
T PRK12938 151 TNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVK---------------AIRPDVLEKIVATIP-------- 207 (246)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhh---------------hcChHHHHHHHhcCC--------
Confidence 78999999999999988876 6899999999999876421 111222222222111
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCC
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTG 336 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~ 336 (413)
...+...+|+++++.+++... ....++++.+.++
T Consensus 208 --------~~~~~~~~~v~~~~~~l~~~~~~~~~g~~~~~~~g 242 (246)
T PRK12938 208 --------VRRLGSPDEIGSIVAWLASEESGFSTGADFSLNGG 242 (246)
T ss_pred --------ccCCcCHHHHHHHHHHHcCcccCCccCcEEEECCc
Confidence 123567899999999888643 2224567877654
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=192.21 Aligned_cols=180 Identities=14% Similarity=0.103 Sum_probs=135.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+|+||||+|+||.+++++|+++|++|++++|+... ..+...++ ..+.++.+|++|.+++++++++
T Consensus 24 l~~-k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~---~~~~~~~l----~~v~~~~~Dl~d~~~v~~~~~~~~~ 95 (315)
T PRK06196 24 LSG-KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDV---AREALAGI----DGVEVVMLDLADLESVRAFAERFLD 95 (315)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHh----hhCeEEEccCCCHHHHHHHHHHHHh
Confidence 345 899999999999999999999999999999875432 22222222 2478899999999999888764
Q ss_pred --CCCcEEEEcCcccCccC--CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCC-CCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE--STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGE-PEKMPITEETPQ 214 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~--~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~-~~~~~~~e~~~~ 214 (413)
.++|+||||||+..... ..+..+..+++|+.+ ++.+++.+++.+.++||++||...... ..........+.
T Consensus 96 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~~ 175 (315)
T PRK06196 96 SGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPIRWDDPHFTRGY 175 (315)
T ss_pred cCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCCCccccCccCCC
Confidence 57999999999754322 234456788999999 566667777766679999999754321 111111112334
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
.+...|+.||++.+.+++.++.+ .|+++++++||.+.++.
T Consensus 176 ~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~ 218 (315)
T PRK06196 176 DKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPL 218 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCc
Confidence 45678999999999999988775 58999999999999875
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=182.33 Aligned_cols=172 Identities=18% Similarity=0.167 Sum_probs=131.5
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----- 143 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 143 (413)
.||+++||||+|+||.+++++|+++|++|++++|+........+.+++ .+.++.++.+|++|.+++.++++.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS---TGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---CCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 458999999999999999999999999999998765433333333322 235788999999999998887764
Q ss_pred CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 144 NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
.++|+||||||...... ..++.+..+++|+.++.+ +++.+.+.+.+++|++||...++.. .
T Consensus 82 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~-----------~ 150 (241)
T PRK07454 82 GCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAF-----------P 150 (241)
T ss_pred CCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCC-----------C
Confidence 56999999999754322 122345567888888555 4455566667899999998776432 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
+..+|+.+|++.+.+++.++.+ .|+++++|+||.+-.+.
T Consensus 151 ~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~ 192 (241)
T PRK07454 151 QWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPL 192 (241)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCc
Confidence 3678999999999999988765 58999999999988763
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=181.38 Aligned_cols=228 Identities=14% Similarity=0.133 Sum_probs=158.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+++||||+|+||.++++.|+++|++|++++|+....++..+.+....+ +.++.++.+|+++++++.+++++
T Consensus 7 ~~~-k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (257)
T PRK09242 7 LDG-QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFP-EREVHGLAADVSDDEDRRAILDWVED 84 (257)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC-CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 446 8999999999999999999999999999998765433333333332221 25788899999999998887764
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||...... ..++.+..+++|+.++..++++ +++.+.++||++||...+...
T Consensus 85 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~---------- 154 (257)
T PRK09242 85 HWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHV---------- 154 (257)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCC----------
Confidence 57999999999743222 2334455788999987666555 455666899999997765432
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+...|+.+|.+.+.+++.++.+ .|+++++++||.+.++...... . .+..........+ +
T Consensus 155 -~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~------------~-~~~~~~~~~~~~~-~-- 217 (257)
T PRK09242 155 -RSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPL------------S-DPDYYEQVIERTP-M-- 217 (257)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCccccccc------------C-ChHHHHHHHhcCC-C--
Confidence 23578999999999999998876 5899999999999887532110 0 1111121111111 1
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTG 336 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~ 336 (413)
.-+...+|+++++..++..... ..++.+.+.++
T Consensus 218 -------------~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~~gg 251 (257)
T PRK09242 218 -------------RRVGEPEEVAAAVAFLCMPAASYITGQCIAVDGG 251 (257)
T ss_pred -------------CCCcCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 1245679999999998864322 23467777544
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=180.10 Aligned_cols=225 Identities=16% Similarity=0.167 Sum_probs=151.0
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
|+++|||||+|+||++++++|+++|++|+++.+ ++.+...+...++...+.++.++.+|++|++++++++++ .
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~ 78 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQ--QNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDE 78 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC--CChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 589999999999999999999999999987532 222233333333322235688899999999999988765 5
Q ss_pred CCcEEEEcCcccCccC-----CcCChHHHHHHHHHHHHHHHHHHH----Hc---CCCEEEEeccceecCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGE-----STLDPLKYYHNITSNTLVVLESMA----RH---GVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~----~~---~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
++|+||||||...... ..++....+++|+.++.++++.+. +. +.++||++||...+....
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~-------- 150 (247)
T PRK09730 79 PLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAP-------- 150 (247)
T ss_pred CCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCC--------
Confidence 6899999999753221 122334578899999766555443 32 246799999975542211
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
.....|+.+|++.+.+++.++.+ .|++++++||+.++||..... . .+..........+ +
T Consensus 151 --~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~-------------~-~~~~~~~~~~~~~-~- 212 (247)
T PRK09730 151 --GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASG-------------G-EPGRVDRVKSNIP-M- 212 (247)
T ss_pred --CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccC-------------C-CHHHHHHHHhcCC-C-
Confidence 11346999999999999988766 589999999999999853210 0 1111222222221 1
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
.-..+++|++++++.++.... ...++.|++.++
T Consensus 213 --------------~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g~ 246 (247)
T PRK09730 213 --------------QRGGQPEEVAQAIVWLLSDKASYVTGSFIDLAGG 246 (247)
T ss_pred --------------CCCcCHHHHHHHHHhhcChhhcCccCcEEecCCC
Confidence 012378999999999887532 223467777553
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=192.53 Aligned_cols=181 Identities=18% Similarity=0.166 Sum_probs=132.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+|+||||+||||.+++++|+++|++|++++|+..+.+++.+.+ ...+..+.++.+|++|.+++++++++ .+
T Consensus 7 k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l---~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 83 (322)
T PRK07453 7 GTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQEL---GIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKP 83 (322)
T ss_pred CEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---hccCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999999999987544333332222 22234688999999999999988865 36
Q ss_pred CcEEEEcCcccCcc-----CCcCChHHHHHHHHHHHHHHHHH----HHHcC--CCEEEEeccceecCCCC-C---C--CC
Q 015080 146 FDAVMHFAAVAYVG-----ESTLDPLKYYHNITSNTLVVLES----MARHG--VDTLIYSSTCATYGEPE-K---M--PI 208 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~----~~~~~--~~~iV~~SS~~~~~~~~-~---~--~~ 208 (413)
+|+||||||+.... ...+..+..+++|+.++.+++++ +++.+ .++||++||...+.... + . +.
T Consensus 84 iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~~~ 163 (322)
T PRK07453 84 LDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPAPA 163 (322)
T ss_pred ccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCCcc
Confidence 99999999975431 12334566789999996665554 44443 35999999977643110 0 0 00
Q ss_pred ------------------CCCCCCCCCChhHHHHHHHHHHHHHHHhhC----CCcEEEEeecceecCC
Q 015080 209 ------------------TEETPQAPINPYGKAKKMAEDIILDFSKNS----DMAVMILRYFNVIGSD 254 (413)
Q Consensus 209 ------------------~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~~lrp~~v~G~~ 254 (413)
.+..+..|..+|+.||++.+.+++.+++++ |+++++++||.|++..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~ 231 (322)
T PRK07453 164 DLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP 231 (322)
T ss_pred chhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc
Confidence 011234567889999999999988888763 7999999999998643
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-22 Score=181.46 Aligned_cols=226 Identities=12% Similarity=0.090 Sum_probs=156.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||.+++++|+++|++|++++|+..+.++..+.++ ..+.++.++.+|++|++++.+++++
T Consensus 7 ~~~-k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T PRK05867 7 LHG-KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIG---TSGGKVVPVCCDVSQHQQVTSMLDQVTA 82 (253)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH---hcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 346 899999999999999999999999999999875443333333332 2235688899999999999888764
Q ss_pred --CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHH----HHcC-CCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESM----ARHG-VDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+...... .+..+..+++|+.++..+++++ .+.+ .++||++||....-..
T Consensus 83 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~--------- 153 (253)
T PRK05867 83 ELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIIN--------- 153 (253)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCC---------
Confidence 589999999997654332 2233446789999866655554 4443 3689999996542100
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
.+.....|+.||++.+.+++.++.+ .|+++++++||.|-.+... .... .........+
T Consensus 154 ~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~---------------~~~~-~~~~~~~~~~--- 214 (253)
T PRK05867 154 VPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVE---------------PYTE-YQPLWEPKIP--- 214 (253)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccc---------------cchH-HHHHHHhcCC---
Confidence 0112467999999999999999887 5899999999999766321 1111 1111111111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...+...+|+|+++++++.... .-.++++.+.+|.
T Consensus 215 -------------~~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgG~ 250 (253)
T PRK05867 215 -------------LGRLGRPEELAGLYLYLASEASSYMTGSDIVIDGGY 250 (253)
T ss_pred -------------CCCCcCHHHHHHHHHHHcCcccCCcCCCeEEECCCc
Confidence 1246788999999999987432 2345678886664
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-22 Score=181.62 Aligned_cols=170 Identities=20% Similarity=0.191 Sum_probs=128.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+|+||.++++.|+++|++|++++|+....++....+.. .+.++.++.+|++|++++.+++++ .+
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSK---DGGKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999999998765443333333322 235788899999999998887765 47
Q ss_pred CcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHH----HHHcC-CCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLES----MARHG-VDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~----~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
+|+||||||+...... .+..+..+++|+.++..++.. +++.+ .++||++||...+... ..
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------~~ 148 (256)
T PRK08643 80 LNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGN-----------PE 148 (256)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCC-----------CC
Confidence 9999999997543222 223455788999986654444 44433 4699999996654221 22
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
...|+.+|++.+.+++.++.+ .|+++++|+||.+.+|.
T Consensus 149 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~ 189 (256)
T PRK08643 149 LAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPM 189 (256)
T ss_pred CchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChh
Confidence 568999999999999998876 68999999999998764
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-21 Score=178.14 Aligned_cols=222 Identities=17% Similarity=0.143 Sum_probs=154.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||||+||+++++.|+++|++|+++.|.... ...+....+...+.++.++.+|++|.+++.+++++ .+
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEA--GAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFGG 83 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchh--HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 899999999999999999999999999888764332 11222222222245788999999999999887764 47
Q ss_pred CcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHH----cCCCEEEEecccee-cCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMAR----HGVDTLIYSSTCAT-YGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~iV~~SS~~~-~~~~~~~~~~e~~~~~~ 216 (413)
+|+|||+||....... .+..+..+++|+.++.++++++.. .+.+++|++||... ++.. .
T Consensus 84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~------------~ 151 (248)
T PRK05557 84 VDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNP------------G 151 (248)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCCC------------C
Confidence 9999999997543321 223445678999998887777654 45678999999643 3321 2
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
...|+.+|.+.+.+++.++++ .++++++++||.+.++... ...+..........+
T Consensus 152 ~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~---------------~~~~~~~~~~~~~~~------- 209 (248)
T PRK05557 152 QANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTD---------------ALPEDVKEAILAQIP------- 209 (248)
T ss_pred CchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCcccc---------------ccChHHHHHHHhcCC-------
Confidence 567999999999999888765 5899999999988655321 111112222211111
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...+++++|+++++..++.... ...++.|++.++.
T Consensus 210 ---------~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~i~~~~ 245 (248)
T PRK05557 210 ---------LGRLGQPEEIASAVAFLASDEAAYITGQTLHVNGGM 245 (248)
T ss_pred ---------CCCCcCHHHHHHHHHHHcCcccCCccccEEEecCCc
Confidence 1246799999999988876522 2245799997664
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-22 Score=182.36 Aligned_cols=228 Identities=11% Similarity=0.082 Sum_probs=152.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcC-CCCceEEEEccCCCHHHHHHHhhc--
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
+.+ |++|||||+++||++++++|+++|++|+++++. +.+......+++.. .+.++.++.+|++|++++++++++
T Consensus 6 l~~-k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (260)
T PRK08416 6 MKG-KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS--NVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKID 82 (260)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC--CHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 456 899999999999999999999999999887642 22222222222211 134788999999999999888865
Q ss_pred ---CCCcEEEEcCcccCc------cC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYV------GE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKM 206 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~------~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~ 206 (413)
.++|+||||||+... .. ..+.....+++|+.+ ++.+++.+++.+.++||++||...+..
T Consensus 83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---- 158 (260)
T PRK08416 83 EDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLVY---- 158 (260)
T ss_pred HhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccccccC----
Confidence 579999999986421 11 112233356677766 555667777666679999999654321
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhc
Q 015080 207 PITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARG 283 (413)
Q Consensus 207 ~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (413)
......|+.||++.+.+++.++.+ +|+++++|+||.+-.+.... .. .. .........
T Consensus 159 -------~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~----~~--------~~-~~~~~~~~~ 218 (260)
T PRK08416 159 -------IENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKA----FT--------NY-EEVKAKTEE 218 (260)
T ss_pred -------CCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhh----cc--------CC-HHHHHHHHh
Confidence 122568999999999999999988 48999999999886542110 00 00 111111111
Q ss_pred cccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 284 IIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 284 ~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
..+ ...+...+|+|+++++++..... ..++.+.+.++.
T Consensus 219 ~~~----------------~~r~~~p~~va~~~~~l~~~~~~~~~G~~i~vdgg~ 257 (260)
T PRK08416 219 LSP----------------LNRMGQPEDLAGACLFLCSEKASWLTGQTIVVDGGT 257 (260)
T ss_pred cCC----------------CCCCCCHHHHHHHHHHHcChhhhcccCcEEEEcCCe
Confidence 111 12367899999999998874322 244677776553
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=179.29 Aligned_cols=224 Identities=18% Similarity=0.190 Sum_probs=155.0
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |++|||||+|+||+++++.|+++|++|+++++.. .........+. +.++.++++|++|++++.+++++
T Consensus 2 ~l~~-k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~--~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (253)
T PRK08642 2 QISE-QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQS--EDAAEALADEL---GDRAIALQADVTDREQVQAMFATAT 75 (253)
T ss_pred CCCC-CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCC--HHHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 3455 8999999999999999999999999998865422 22222222222 24688999999999999888765
Q ss_pred ---CC-CcEEEEcCcccCc------c----CCcCChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCC
Q 015080 144 ---NA-FDAVMHFAAVAYV------G----ESTLDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEK 205 (413)
Q Consensus 144 ---~~-~dvvi~~Ag~~~~------~----~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~ 205 (413)
.. +|+||||||+... . ...++....+++|+.++.++++++. +.+.++||++||.....
T Consensus 76 ~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~---- 151 (253)
T PRK08642 76 EHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQN---- 151 (253)
T ss_pred HHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccC----
Confidence 23 9999999986321 0 1122345578899999777766654 45567999999954321
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHh
Q 015080 206 MPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAAR 282 (413)
Q Consensus 206 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (413)
+..+..+|+.||++.+.+++.++++ .|++++.|+||.+..+.... ...+.......
T Consensus 152 -------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~--------------~~~~~~~~~~~ 210 (253)
T PRK08642 152 -------PVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASA--------------ATPDEVFDLIA 210 (253)
T ss_pred -------CCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhc--------------cCCHHHHHHHH
Confidence 3334678999999999999999887 58999999999987653110 11111222222
Q ss_pred ccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCC
Q 015080 283 GIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTG 336 (413)
Q Consensus 283 ~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~ 336 (413)
...+ ...+.+.+|++++++.++... ....++++.+.++
T Consensus 211 ~~~~----------------~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~vdgg 249 (253)
T PRK08642 211 ATTP----------------LRKVTTPQEFADAVLFFASPWARAVTGQNLVVDGG 249 (253)
T ss_pred hcCC----------------cCCCCCHHHHHHHHHHHcCchhcCccCCEEEeCCC
Confidence 1111 124789999999999999743 2334568877655
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-22 Score=185.16 Aligned_cols=175 Identities=17% Similarity=0.152 Sum_probs=132.4
Q ss_pred CCCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 65 QHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 65 ~~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
..+.+ |+|+||||+|+||.+++++|+++|++|++++|+....++..+.+.+ .+..+.++.+|++|.+++.++++.
T Consensus 36 ~~~~~-k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~---~~~~~~~~~~Dl~d~~~v~~~~~~~ 111 (293)
T PRK05866 36 VDLTG-KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITR---AGGDAMAVPCDLSDLDAVDALVADV 111 (293)
T ss_pred cCCCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 34556 8999999999999999999999999999998764333333333322 235688999999999999888863
Q ss_pred ----CCCcEEEEcCcccCccCCc------CChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGEST------LDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~~~------~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|+||||||+....... ++.+..+++|+.++.. +++.+++.+.++||++||.+++...
T Consensus 112 ~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 185 (293)
T PRK05866 112 EKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEA------ 185 (293)
T ss_pred HHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCC------
Confidence 4799999999976443321 2234578899998554 5555667777899999997655321
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
......|+.||++.+.+++.++.+ .|+++++++||.|-.+
T Consensus 186 ----~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~ 228 (293)
T PRK05866 186 ----SPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATP 228 (293)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCc
Confidence 122568999999999999998877 5899999999987665
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=178.31 Aligned_cols=226 Identities=22% Similarity=0.209 Sum_probs=157.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
.++ |+++||||+|+||+++++.|+++|++|+++.+... ....+..+++...+.++.++.+|++|.+++.+++++
T Consensus 3 ~~~-~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (245)
T PRK12937 3 LSN-KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSA--AAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAET 79 (245)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 445 89999999999999999999999999988765332 122222222222245789999999999999888865
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
.++|+||||||...... ..++.+..+++|+.++.+++.++.+. ..++||++||...+. +..
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~-----------~~~ 148 (245)
T PRK12937 80 AFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIAL-----------PLP 148 (245)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccC-----------CCC
Confidence 47999999999754322 12234456889999988888777653 346999999966542 223
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
+...|+.+|.+.+.+++.++.+ .|+++++++||.+-++.... ...+.....+....+
T Consensus 149 ~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~--------------~~~~~~~~~~~~~~~------ 208 (245)
T PRK12937 149 GYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFN--------------GKSAEQIDQLAGLAP------ 208 (245)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcc--------------cCCHHHHHHHHhcCC------
Confidence 3678999999999999998876 58999999999887653110 111112222222211
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCC
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTG 336 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~ 336 (413)
...+.+++|+++++..++..... ..++.+++.++
T Consensus 209 ----------~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 243 (245)
T PRK12937 209 ----------LERLGTPEEIAAAVAFLAGPDGAWVNGQVLRVNGG 243 (245)
T ss_pred ----------CCCCCCHHHHHHHHHHHcCccccCccccEEEeCCC
Confidence 11346789999999998875432 23568888654
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=179.12 Aligned_cols=223 Identities=14% Similarity=0.080 Sum_probs=155.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+||||||+|+||.+++++|+++|++|+++++... ....+...++...+..+.++.+|++|.+++++++++ .+
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDE--EGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR 80 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCCh--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 79999999999999999999999999988764322 222222223323345789999999999998887765 57
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHH----cC-CCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMAR----HG-VDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
+|+||||||...... ..++.+..+++|+.++.++++++.+ .+ .++||++||.... .+..+
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~-----------~~~~~ 149 (256)
T PRK12743 81 IDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEH-----------TPLPG 149 (256)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeecccc-----------CCCCC
Confidence 999999999754322 2233455788999998887766543 22 4699999996432 23344
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
...|+.+|++.+.+++.++.+ .|++++.|+||.+.++.... ............ +++
T Consensus 150 ~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~---------------~~~~~~~~~~~~---~~~--- 208 (256)
T PRK12743 150 ASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGM---------------DDSDVKPDSRPG---IPL--- 208 (256)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccc---------------cChHHHHHHHhc---CCC---
Confidence 678999999999999998876 58999999999999874210 001111111111 111
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
..+.+.+|+++++..++.... ...+.++.+.++.
T Consensus 209 ----------~~~~~~~dva~~~~~l~~~~~~~~~G~~~~~dgg~ 243 (256)
T PRK12743 209 ----------GRPGDTHEIASLVAWLCSEGASYTTGQSLIVDGGF 243 (256)
T ss_pred ----------CCCCCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 124588999999998886432 2245678886664
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=180.20 Aligned_cols=233 Identities=15% Similarity=0.052 Sum_probs=158.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+++||||+|+||.+++++|+++|++|++++|+..+.++..+.++ ..+.++.++++|++|.+++++++++
T Consensus 8 ~~~-k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (265)
T PRK07097 8 LKG-KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYR---ELGIEAHGYVCDVTDEDGVQAMVSQIEK 83 (265)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH---hcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 345 899999999999999999999999999998765443333333332 2235788999999999999988865
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHH----HHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTL----VVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~----~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..+.....+++|+.++. .+++.+++.+.++||++||..... +
T Consensus 84 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~ 152 (265)
T PRK07097 84 EVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSEL-----------G 152 (265)
T ss_pred hCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccC-----------C
Confidence 56999999999864432 22334456778998855 455555566678999999964321 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
..+...|+.+|++.+.+++.++++ .|++++.|+||.+.++........... +. .......+....+
T Consensus 153 ~~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~------~~-~~~~~~~~~~~~~---- 221 (265)
T PRK07097 153 RETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQAD------GS-RHPFDQFIIAKTP---- 221 (265)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhcccc------cc-chhHHHHHHhcCC----
Confidence 123678999999999999999888 589999999999988742210000000 00 0001111111111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...+...+|+|++++.++.... ...++.+.+.++.
T Consensus 222 ------------~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~ 257 (265)
T PRK07097 222 ------------AARWGDPEDLAGPAVFLASDASNFVNGHILYVDGGI 257 (265)
T ss_pred ------------ccCCcCHHHHHHHHHHHhCcccCCCCCCEEEECCCc
Confidence 1235678999999999988532 2244677776654
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=179.57 Aligned_cols=224 Identities=16% Similarity=0.133 Sum_probs=157.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||.+++++|+++|++|++++|+... .+...+.. ...+.++.+|+++++++.+++++
T Consensus 13 ~~~-k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~----~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 85 (255)
T PRK06841 13 LSG-KVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDV----AEVAAQLL--GGNAKGLVCDVSDSQSVEAAVAAVIS 85 (255)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHhh--CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 456 899999999999999999999999999999875431 12222221 24577899999999999888764
Q ss_pred --CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||....... .++....+++|+.++.+++.++. +.+.++||++||.......
T Consensus 86 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 155 (255)
T PRK06841 86 AFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVAL---------- 155 (255)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCC----------
Confidence 478999999997643322 22344578899999777776654 4467899999996643221
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
....+|+.+|++.+.+++.++.+ .|++++.|+||.|..+.... .+............
T Consensus 156 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~--------------~~~~~~~~~~~~~~----- 215 (255)
T PRK06841 156 -ERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKK--------------AWAGEKGERAKKLI----- 215 (255)
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCccccc--------------ccchhHHHHHHhcC-----
Confidence 22568999999999999999887 58999999999998764210 00000111111111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKG 338 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~ 338 (413)
....+.+++|+|++++.++..... ..++++.+.+|..
T Consensus 216 -----------~~~~~~~~~~va~~~~~l~~~~~~~~~G~~i~~dgg~~ 253 (255)
T PRK06841 216 -----------PAGRFAYPEEIAAAALFLASDAAAMITGENLVIDGGYT 253 (255)
T ss_pred -----------CCCCCcCHHHHHHHHHHHcCccccCccCCEEEECCCcc
Confidence 123578999999999999875322 2457888876653
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=180.97 Aligned_cols=226 Identities=18% Similarity=0.123 Sum_probs=153.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+....+ +...++ +.++.++.+|++|.+++.++++.
T Consensus 4 ~~~-k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 4 LAG-KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGA---AVAASL---GERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 345 89999999999999999999999999999987543222 222222 24688999999999999888765
Q ss_pred --CCCcEEEEcCcccCccC---CcCChHHHHHHHHHHHHHHHHHHHH---cCCCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE---STLDPLKYYHNITSNTLVVLESMAR---HGVDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~---~~~~~~~~~~~n~~~~~~ll~~~~~---~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
.++|+||||||...... ..++.+..+++|+.++..+++++.. .+.++||++||...+... .
T Consensus 77 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~-----------~ 145 (261)
T PRK08265 77 RFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQ-----------T 145 (261)
T ss_pred HhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCC-----------C
Confidence 47999999999753221 2233455788899986665555432 345799999996654221 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
....|+.+|++.+.+++.++.+ .|+++++|+||.+..+....... . ...........
T Consensus 146 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~-----------~-~~~~~~~~~~~-------- 205 (261)
T PRK08265 146 GRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSG-----------G-DRAKADRVAAP-------- 205 (261)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcc-----------c-chhHHHHhhcc--------
Confidence 2568999999999999999877 58999999999887653110000 0 00000111000
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
......+...+|+|+++.+++.... ...+.++.+.++.
T Consensus 206 -------~~p~~r~~~p~dva~~~~~l~s~~~~~~tG~~i~vdgg~ 244 (261)
T PRK08265 206 -------FHLLGRVGDPEEVAQVVAFLCSDAASFVTGADYAVDGGY 244 (261)
T ss_pred -------cCCCCCccCHHHHHHHHHHHcCccccCccCcEEEECCCe
Confidence 0011235678999999999987432 2245678886653
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=178.83 Aligned_cols=168 Identities=19% Similarity=0.195 Sum_probs=129.1
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
.+ |+++||||+|+||++++++|+++|++|++++|+. +...+..+++ +..+.++++|++|.+++.++++.
T Consensus 5 ~~-k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~---~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (249)
T PRK06500 5 QG-KTALITGGTSGIGLETARQFLAEGARVAITGRDP---ASLEAARAEL---GESALVIRADAGDVAAQKALAQALAEA 77 (249)
T ss_pred CC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH---HHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 35 8999999999999999999999999999987643 2222222222 34688899999999988776653
Q ss_pred -CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccce-ecCCCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCA-TYGEPEKMPITEETPQA 215 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~-~~~~~~~~~~~e~~~~~ 215 (413)
.++|+||||||...... ..+..+..+++|+.++.++++++... ..+++|++||.. .++. .
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~------------~ 145 (249)
T PRK06500 78 FGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGM------------P 145 (249)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCC------------C
Confidence 57999999999754332 22345568899999999998888752 345788888744 3432 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
...+|+.+|++.|.+++.++.+ .|+++++++||.+++|.
T Consensus 146 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~ 187 (249)
T PRK06500 146 NSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPL 187 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHH
Confidence 2578999999999999998876 48999999999999874
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-22 Score=181.63 Aligned_cols=167 Identities=20% Similarity=0.220 Sum_probs=128.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+|+||||+|+||.++++.|+++|++|++++|+... +.+..... +.++.++.+|++|.+++.++++. .+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 74 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQER---LQELKDEL---GDNLYIAQLDVRNRAAIEEMLASLPAEWRN 74 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHh---ccceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 579999999999999999999999999999875432 22222221 24688999999999999887764 47
Q ss_pred CcEEEEcCcccCc-c----CCcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYV-G----ESTLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~~~~-~----~~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
+|+||||||.... . ...++....+++|+.+ ++++++.+++.+.+++|++||...+. +..+
T Consensus 75 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-----------~~~~ 143 (248)
T PRK10538 75 IDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW-----------PYAG 143 (248)
T ss_pred CCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCC-----------CCCC
Confidence 9999999997421 1 1223345678899999 55566666677778999999966532 2233
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
...|+.+|.+.+.+++.++.+ .|+++++++||.+.|+.
T Consensus 144 ~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~ 184 (248)
T PRK10538 144 GNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTE 184 (248)
T ss_pred CchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccc
Confidence 678999999999999999876 58999999999998764
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=179.61 Aligned_cols=226 Identities=15% Similarity=0.089 Sum_probs=157.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||.++++.|+++|++|++++|+..+.++..+.++. .+.++.++.+|+++++++.+++++
T Consensus 8 ~~~-~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (263)
T PRK07814 8 LDD-QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRA---AGRRAHVVAADLAHPEATAGLAGQAVE 83 (263)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 345 8999999999999999999999999999998764433333333322 235688999999999999887764
Q ss_pred --CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHH-----cCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMAR-----HGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~-----~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||....... .++....+++|+.++.++++++.+ .+.+++|++||.....
T Consensus 84 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~----------- 152 (263)
T PRK07814 84 AFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL----------- 152 (263)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC-----------
Confidence 479999999997543222 234556788999998888888763 4567999999965432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN--SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~--~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
+..+...|+.+|++.+.+++.++.+ .+++++.++||.+..+..... .-...+.....+..+
T Consensus 153 ~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~-------------~~~~~~~~~~~~~~~---- 215 (263)
T PRK07814 153 AGRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVV-------------AANDELRAPMEKATP---- 215 (263)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhc-------------cCCHHHHHHHHhcCC----
Confidence 2234678999999999999999887 358999999999876531100 000111112111111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
...+..++|+++++++++.... ...++.+.+.++
T Consensus 216 ------------~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~~ 250 (263)
T PRK07814 216 ------------LRRLGDPEDIAAAAVYLASPAGSYLTGKTLEVDGG 250 (263)
T ss_pred ------------CCCCcCHHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 1234688999999999887432 223467777554
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=177.98 Aligned_cols=224 Identities=14% Similarity=0.078 Sum_probs=153.1
Q ss_pred CCCCceEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 66 HEEGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 66 ~~~~~k~vlITGas--G~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
.+++ |+++||||+ ++||.+++++|+++|++|++++|+. +..+.++++.. ..+.++++|++|+++++++++.
T Consensus 4 ~l~~-k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~----~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~ 76 (252)
T PRK06079 4 ILSG-KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND----RMKKSLQKLVD--EEDLLVECDVASDESIERAFAT 76 (252)
T ss_pred ccCC-CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch----HHHHHHHhhcc--CceeEEeCCCCCHHHHHHHHHH
Confidence 3556 999999999 7999999999999999999988752 23333443322 4678899999999999887755
Q ss_pred -----CCCcEEEEcCcccCc----cC----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCC
Q 015080 144 -----NAFDAVMHFAAVAYV----GE----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~----~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~ 208 (413)
.++|+||||||+..+ .. ..++.+..+++|+.+...++.++... +.++||++||.....
T Consensus 77 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~------- 149 (252)
T PRK06079 77 IKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSER------- 149 (252)
T ss_pred HHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccc-------
Confidence 579999999997542 11 12234456778888865555444332 236999999965432
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
+......|+.||++.+.+++.++.+ .|+++++|.||.|-.+..... .-.+..........
T Consensus 150 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~ 212 (252)
T PRK06079 150 ----AIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGI-------------KGHKDLLKESDSRT 212 (252)
T ss_pred ----cCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccC-------------CChHHHHHHHHhcC
Confidence 1223678999999999999999987 689999999999977532100 00011122221111
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
+ ...+...+|+|+++.+++.... ...++++.+.++
T Consensus 213 p----------------~~r~~~pedva~~~~~l~s~~~~~itG~~i~vdgg 248 (252)
T PRK06079 213 V----------------DGVGVTIEEVGNTAAFLLSDLSTGVTGDIIYVDKG 248 (252)
T ss_pred c----------------ccCCCCHHHHHHHHHHHhCcccccccccEEEeCCc
Confidence 1 1236788999999999987532 234467777554
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-22 Score=207.05 Aligned_cols=236 Identities=21% Similarity=0.200 Sum_probs=163.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+|+||+++++.|+++|++|++++|+....+... ..+... .++.++.+|++|.+++.+++++
T Consensus 420 l~g-k~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~---~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 420 LAG-KVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAA---AELGGP-DRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCC-CEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHH---HHHhcc-CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 346 89999999999999999999999999999987653332222 222222 4788999999999999887764
Q ss_pred --CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHH----HHHcCC-CEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLES----MARHGV-DTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~----~~~~~~-~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
+++|+||||||+...... .+.....+++|+.++..++++ +++.+. ++||++||...+...
T Consensus 495 ~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~--------- 565 (681)
T PRK08324 495 AFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPG--------- 565 (681)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCC---------
Confidence 479999999997654332 223445788999997777544 455553 799999997654322
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeeccee-cCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVI-GSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
.+..+|+.+|++.+.+++.++.+ .|+++++++|+.|| ++..... .+.. ......+...-
T Consensus 566 --~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~-------------~~~~--~~~~~~g~~~~ 628 (681)
T PRK08324 566 --PNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTG-------------EWIE--ARAAAYGLSEE 628 (681)
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccc-------------hhhh--hhhhhccCChH
Confidence 22678999999999999999877 47999999999998 5431100 0000 00000010000
Q ss_pred ---eEecccccCCCCceeeecccHHHHHHHHHHHHHh-cCCCCccEEEecCCCcc
Q 015080 289 ---KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALER-AQPKKVGIYNVGTGKGR 339 (413)
Q Consensus 289 ---~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~-~~~~~~~~yni~~~~~~ 339 (413)
...+ ++...+.+++++|+|++++.++.. .....+++|++.+|...
T Consensus 629 ~~~~~~~------~~~~l~~~v~~~DvA~a~~~l~s~~~~~~tG~~i~vdgG~~~ 677 (681)
T PRK08324 629 ELEEFYR------ARNLLKREVTPEDVAEAVVFLASGLLSKTTGAIITVDGGNAA 677 (681)
T ss_pred HHHHHHH------hcCCcCCccCHHHHHHHHHHHhCccccCCcCCEEEECCCchh
Confidence 0011 344566899999999999998842 22224579999887643
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=178.88 Aligned_cols=170 Identities=18% Similarity=0.163 Sum_probs=128.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC-CEEEEEecCCCC-CchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----C
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRG-NIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G-~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~ 144 (413)
|+|+||||+|+||+++|++|+++| ++|++++|+... .+++.+.++... ..++.++.+|++|.+++.+++++ .
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~--~~~v~~~~~D~~~~~~~~~~~~~~~~~g 86 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG--ASSVEVIDFDALDTDSHPKVIDAAFAGG 86 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC--CCceEEEEecCCChHHHHHHHHHHHhcC
Confidence 889999999999999999999995 899999886553 333444443321 13689999999999987766543 4
Q ss_pred CCcEEEEcCcccCccC-CcCCh---HHHHHHHHHHHH----HHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGE-STLDP---LKYYHNITSNTL----VVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~-~~~~~---~~~~~~n~~~~~----~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
++|++|||+|...... ...+. ...+++|+.++. .+++.+++.+.++||++||...+.. ..+
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~~-----------~~~ 155 (253)
T PRK07904 87 DVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGERV-----------RRS 155 (253)
T ss_pred CCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcCC-----------CCC
Confidence 7999999999854321 11122 235889998854 4788888888889999999764321 123
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
...|+.||++...+++.++.+ +|+++++++||.+..+
T Consensus 156 ~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~ 195 (253)
T PRK07904 156 NFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTR 195 (253)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecc
Confidence 567999999999998888665 6899999999999864
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-22 Score=187.62 Aligned_cols=175 Identities=15% Similarity=0.147 Sum_probs=128.2
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC--HHHHHHHhhc--
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD--AKAVNKFFSE-- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~-- 143 (413)
.+ ++++||||||+||.++|++|+++|++|++++|+..+.+++.+.+++..+ ..++..+.+|+++ .+.++++.+.
T Consensus 52 ~g-~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~-~~~~~~~~~Dl~~~~~~~~~~l~~~~~ 129 (320)
T PLN02780 52 YG-SWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYS-KTQIKTVVVDFSGDIDEGVKRIKETIE 129 (320)
T ss_pred cC-CEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC-CcEEEEEEEECCCCcHHHHHHHHHHhc
Confidence 36 8999999999999999999999999999999876554444444443222 1467888999985 3444443332
Q ss_pred -CCCcEEEEcCcccCc--cC----CcCChHHHHHHHHHHHH----HHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYV--GE----STLDPLKYYHNITSNTL----VVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~--~~----~~~~~~~~~~~n~~~~~----~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|++|||||+..+ .. ..++.+..+++|+.++. .+++.|.+++.++||++||.+.+...
T Consensus 130 ~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~--------- 200 (320)
T PLN02780 130 GLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIP--------- 200 (320)
T ss_pred CCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC---------
Confidence 357799999998642 11 12233457889999854 45666667777899999997764210
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
+.+....|+.||++.+.+++.++.| .|+++++++||.|-.+
T Consensus 201 ~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~ 244 (320)
T PLN02780 201 SDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATK 244 (320)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecC
Confidence 0122678999999999999999887 5899999999998765
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-21 Score=177.74 Aligned_cols=224 Identities=13% Similarity=0.030 Sum_probs=155.2
Q ss_pred CCCceEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEecCCCC--------CchhhhhhhhhcCCCCceEEEEccCCCHHH
Q 015080 67 EEGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRG--------NIGAVKVLQELFPEPGRLQFIYADLGDAKA 136 (413)
Q Consensus 67 ~~~~k~vlITGasG--~IG~~la~~L~~~G~~V~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 136 (413)
+++ |+||||||+| +||.+++++|+++|++|++++|...+ ..........+...+.++.++.+|+++.++
T Consensus 3 l~~-k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 81 (256)
T PRK12748 3 LMK-KIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYA 81 (256)
T ss_pred CCC-cEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 345 8999999995 89999999999999999999875211 111111122222224578999999999999
Q ss_pred HHHHhhc-----CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHH----cCCCEEEEeccceecCCC
Q 015080 137 VNKFFSE-----NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMAR----HGVDTLIYSSTCATYGEP 203 (413)
Q Consensus 137 ~~~~~~~-----~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~iV~~SS~~~~~~~ 203 (413)
+.+++++ .++|+||||||+...... .++.+..+++|+.++..+++++.. .+.+++|++||...+...
T Consensus 82 ~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~ 161 (256)
T PRK12748 82 PNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGPM 161 (256)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCCC
Confidence 8887765 579999999997543222 223455688999998888877653 345799999997765432
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHH
Q 015080 204 EKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDA 280 (413)
Q Consensus 204 ~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (413)
.+...|+.+|++.+.+++.++.+ .|++++.++||.+..+... ......
T Consensus 162 -----------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~------------------~~~~~~ 212 (256)
T PRK12748 162 -----------PDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWIT------------------EELKHH 212 (256)
T ss_pred -----------CCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCC------------------hhHHHh
Confidence 23568999999999999998877 5899999999988765211 111111
Q ss_pred HhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCC
Q 015080 281 ARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTG 336 (413)
Q Consensus 281 ~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~ 336 (413)
.....+ ...+...+|+++++.+++..... ..++++++.++
T Consensus 213 ~~~~~~----------------~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~g 253 (256)
T PRK12748 213 LVPKFP----------------QGRVGEPVDAARLIAFLVSEEAKWITGQVIHSEGG 253 (256)
T ss_pred hhccCC----------------CCCCcCHHHHHHHHHHHhCcccccccCCEEEecCC
Confidence 111111 01245679999999888775322 23578888655
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-21 Score=177.85 Aligned_cols=222 Identities=17% Similarity=0.117 Sum_probs=157.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |++|||||+|+||++++++|+++|++|++++|+... . ..+..+.++++|++|+++++++++.
T Consensus 4 ~~~-k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~-----~------~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 71 (252)
T PRK07856 4 LTG-RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE-----T------VDGRPAEFHAADVRDPDQVAALVDAIVE 71 (252)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh-----h------hcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 446 899999999999999999999999999999875432 0 0135688999999999999887755
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHH----c-CCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMAR----H-GVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..+..+..+++|+.++..+++++.. . +.++||++||...+..
T Consensus 72 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~---------- 141 (252)
T PRK07856 72 RHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRP---------- 141 (252)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCC----------
Confidence 47899999999754322 1223456788999998888777643 2 3579999999765532
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKNS--DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
......|+.+|++.+.+++.++.+. .+++++++||.|..+......+ .+..........+
T Consensus 142 -~~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~-------------~~~~~~~~~~~~~---- 203 (252)
T PRK07856 142 -SPGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYG-------------DAEGIAAVAATVP---- 203 (252)
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhcc-------------CHHHHHHHhhcCC----
Confidence 2236789999999999999998873 3899999999998764211000 0011111111111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCccc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKGRS 340 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~~s 340 (413)
...+...+|+++++++++... ..-.+..+.+.+|...+
T Consensus 204 ------------~~~~~~p~~va~~~~~L~~~~~~~i~G~~i~vdgg~~~~ 242 (252)
T PRK07856 204 ------------LGRLATPADIAWACLFLASDLASYVSGANLEVHGGGERP 242 (252)
T ss_pred ------------CCCCcCHHHHHHHHHHHcCcccCCccCCEEEECCCcchH
Confidence 123567899999999988743 22345788887765443
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-21 Score=180.93 Aligned_cols=227 Identities=17% Similarity=0.111 Sum_probs=153.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC------CCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHH
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR------GNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKF 140 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 140 (413)
+++ |++|||||+++||.+++++|++.|++|+++++..+ ..+...+...++...+.++.++.+|++|.+++.++
T Consensus 4 l~~-k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 4 LDG-RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL 82 (286)
T ss_pred cCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence 345 89999999999999999999999999999887541 11333333333333345688899999999998887
Q ss_pred hhc-----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHH----HHHHHcC------CCEEEEeccceecC
Q 015080 141 FSE-----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVL----ESMARHG------VDTLIYSSTCATYG 201 (413)
Q Consensus 141 ~~~-----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll----~~~~~~~------~~~iV~~SS~~~~~ 201 (413)
++. .++|+||||||+..... ..++.+..+++|+.++..++ +.+++.. .++||++||.+.+.
T Consensus 83 ~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~ 162 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQ 162 (286)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCc
Confidence 754 57999999999854322 22334557889999965554 4444331 25999999966542
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHH
Q 015080 202 EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACF 278 (413)
Q Consensus 202 ~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (413)
.. .....|+.||++.+.+++.++.+ .|+++++|.|| +..+. .....
T Consensus 163 ~~-----------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~-------------------~~~~~ 211 (286)
T PRK07791 163 GS-----------VGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRM-------------------TETVF 211 (286)
T ss_pred CC-----------CCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCc-------------------chhhH
Confidence 22 22678999999999999999887 68999999998 43221 11111
Q ss_pred HHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCcc
Q 015080 279 DAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKGR 339 (413)
Q Consensus 279 ~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~~ 339 (413)
.......+ . ....+...+|+|+++++++... ....++.+.+.+|...
T Consensus 212 ~~~~~~~~------------~--~~~~~~~pedva~~~~~L~s~~~~~itG~~i~vdgG~~~ 259 (286)
T PRK07791 212 AEMMAKPE------------E--GEFDAMAPENVSPLVVWLGSAESRDVTGKVFEVEGGKIS 259 (286)
T ss_pred HHHHhcCc------------c--cccCCCCHHHHHHHHHHHhCchhcCCCCcEEEEcCCceE
Confidence 11111101 1 1113567899999999988643 2234567777655433
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=178.02 Aligned_cols=225 Identities=13% Similarity=0.120 Sum_probs=155.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+++||||+|+||.++++.|+++|++|++++|+....++..+.+.+ .+.++.++++|++|++++++++++ .+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQ---FPGQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 7999999999999999999999999999998764433333333322 235788999999999999887765 47
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHH----HcC-CCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMA----RHG-VDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
+|+||||||...... ..++.+..+++|+.++.++++++. +.+ .++||++||...+... ..
T Consensus 79 id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~-----------~~ 147 (252)
T PRK07677 79 IDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAG-----------PG 147 (252)
T ss_pred ccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCC-----------CC
Confidence 999999999643222 223345678999999777776663 332 4799999997654221 22
Q ss_pred CChhHHHHHHHHHHHHHHHhh----CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 217 INPYGKAKKMAEDIILDFSKN----SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
..+|+.||++.+.+++.++.+ +|++++.++||.+.++...... ...+...+.+.+..+
T Consensus 148 ~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~------------~~~~~~~~~~~~~~~------ 209 (252)
T PRK07677 148 VIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKL------------WESEEAAKRTIQSVP------ 209 (252)
T ss_pred CcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccc------------cCCHHHHHHHhccCC------
Confidence 567999999999999998776 4899999999999854211000 001112222222111
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCC
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGK 337 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~ 337 (413)
...+...+|+++++..++... ....+.++.+.++.
T Consensus 210 ----------~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~gg~ 245 (252)
T PRK07677 210 ----------LGRLGTPEEIAGLAYFLLSDEAAYINGTCITMDGGQ 245 (252)
T ss_pred ----------CCCCCCHHHHHHHHHHHcCccccccCCCEEEECCCe
Confidence 123678899999998887643 22344677776553
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=171.53 Aligned_cols=183 Identities=25% Similarity=0.371 Sum_probs=140.7
Q ss_pred EEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEEEc
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMHF 152 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi~~ 152 (413)
|+|+||||++|+.++++|+++|++|+++.|+..+.+ + ..+++++.+|+.|++++.+++ .++|+||++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~---~--------~~~~~~~~~d~~d~~~~~~al--~~~d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAE---D--------SPGVEIIQGDLFDPDSVKAAL--KGADAVIHA 67 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHH---H--------CTTEEEEESCTTCHHHHHHHH--TTSSEEEEC
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcc---c--------ccccccceeeehhhhhhhhhh--hhcchhhhh
Confidence 799999999999999999999999999987644222 1 268999999999999999999 689999999
Q ss_pred CcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 015080 153 AAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIIL 232 (413)
Q Consensus 153 Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~ 232 (413)
+|.... ....++++++++++++++++|++||..+|.........+. ......|...|..+|.+++
T Consensus 68 ~~~~~~-------------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~~~~ 132 (183)
T PF13460_consen 68 AGPPPK-------------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDED--KPIFPEYARDKREAEEALR 132 (183)
T ss_dssp CHSTTT-------------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGT--CGGGHHHHHHHHHHHHHHH
T ss_pred hhhhcc-------------cccccccccccccccccccceeeeccccCCCCCccccccc--ccchhhhHHHHHHHHHHHH
Confidence 975321 1677889999999999999999999999875433111111 1112568899988888775
Q ss_pred HHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHHHH
Q 015080 233 DFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDL 312 (413)
Q Consensus 233 ~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dv 312 (413)
. .+++++++||+.+||+..... .+ +.. .+....++|+.+|+
T Consensus 133 ~----~~~~~~ivrp~~~~~~~~~~~-------------~~----------------~~~------~~~~~~~~i~~~Dv 173 (183)
T PF13460_consen 133 E----SGLNWTIVRPGWIYGNPSRSY-------------RL----------------IKE------GGPQGVNFISREDV 173 (183)
T ss_dssp H----STSEEEEEEESEEEBTTSSSE-------------EE----------------ESS------TSTTSHCEEEHHHH
T ss_pred h----cCCCEEEEECcEeEeCCCcce-------------eE----------------Eec------cCCCCcCcCCHHHH
Confidence 4 699999999999999852200 11 000 23344589999999
Q ss_pred HHHHHHHHHh
Q 015080 313 VDAHVKALER 322 (413)
Q Consensus 313 a~a~~~~~~~ 322 (413)
|++++.++++
T Consensus 174 A~~~~~~l~~ 183 (183)
T PF13460_consen 174 AKAIVEALEN 183 (183)
T ss_dssp HHHHHHHHH-
T ss_pred HHHHHHHhCC
Confidence 9999999874
|
... |
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=178.57 Aligned_cols=172 Identities=13% Similarity=0.119 Sum_probs=130.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+++||||+|+||.+++++|+++|++|++++|+..+..+....+.+..+ +..+.++.+|++|++++.+++++ .+
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYP-GIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC-CceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 7899999999999999999999999999998765443333333332211 35788999999999999887764 47
Q ss_pred CcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||+...... .+.....+++|+.++..+++++ ++.+.++||++||....... +.+.
T Consensus 82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------~~~~ 151 (248)
T PRK08251 82 LDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGL----------PGVK 151 (248)
T ss_pred CCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCC----------CCCc
Confidence 9999999998654332 2233457889999976666554 55667899999996543211 1125
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
.+|+.||++.+.+++.++.+ .++++++++||.+.++
T Consensus 152 ~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~ 190 (248)
T PRK08251 152 AAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSE 190 (248)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcch
Confidence 68999999999999988876 4799999999999875
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=179.69 Aligned_cols=171 Identities=13% Similarity=0.122 Sum_probs=129.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEecC-CCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL-SRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
+++||||+|+||.++++.|+++|++|++++|+ ....+...+.+..... ...+.++.+|++|.+++.+++++ .+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHG-EGVAFAAVQDVTDEAQWQALLAQAADAMGG 79 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC-CceEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 38999999999999999999999999999875 2222222222222111 12355688999999999887754 57
Q ss_pred CcEEEEcCcccCccCC----cCChHHHHHHHHH----HHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGES----TLDPLKYYHNITS----NTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~----~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||....... .++....+++|+. +++++++.+++.+.++||++||...+.... ..
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~~~-----------~~ 148 (251)
T PRK07069 80 LSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKAEP-----------DY 148 (251)
T ss_pred ccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccCCC-----------CC
Confidence 9999999997644322 1223446778888 688899999888788999999987765332 25
Q ss_pred ChhHHHHHHHHHHHHHHHhh-----CCCcEEEEeecceecCC
Q 015080 218 NPYGKAKKMAEDIILDFSKN-----SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~lrp~~v~G~~ 254 (413)
..|+.+|.+.+.+++.++.+ .++++++++||.+.+|.
T Consensus 149 ~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~ 190 (251)
T PRK07069 149 TAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGI 190 (251)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcc
Confidence 67999999999999998876 24899999999998875
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-21 Score=175.22 Aligned_cols=214 Identities=16% Similarity=0.159 Sum_probs=148.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+|+||++++++|+++|++|++++|+... ..+.+.. .++.++.+|++|.+++.+++++ .+
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 74 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYP---AIDGLRQ-----AGAQCIQADFSTNAGIMAFIDELKQHTDG 74 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchh---HHHHHHH-----cCCEEEEcCCCCHHHHHHHHHHHHhhCCC
Confidence 799999999999999999999999999999875432 2233322 2367899999999998887765 46
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHH----HHHHHHHcC--CCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLV----VLESMARHG--VDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~----ll~~~~~~~--~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
+|+||||||...... ..++.+..+++|+.++.. +++.+++.+ .++||++||..... +..
T Consensus 75 id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~-----------~~~ 143 (236)
T PRK06483 75 LRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEK-----------GSD 143 (236)
T ss_pred ccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhcc-----------CCC
Confidence 999999999753322 123345578888888654 555555544 46899999965432 122
Q ss_pred CCChhHHHHHHHHHHHHHHHhhC--CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 216 PINPYGKAKKMAEDIILDFSKNS--DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
....|+.||++.+.+++.++.+. ++++++|+||.+..+... ............+ +
T Consensus 144 ~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~-----------------~~~~~~~~~~~~~-~----- 200 (236)
T PRK06483 144 KHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGD-----------------DAAYRQKALAKSL-L----- 200 (236)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCC-----------------CHHHHHHHhccCc-c-----
Confidence 35689999999999999999883 599999999988532100 0011111111111 1
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCC
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGK 337 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~ 337 (413)
.-+...+|+++++.+++.. ....++++.+.+|.
T Consensus 201 ----------~~~~~~~~va~~~~~l~~~-~~~~G~~i~vdgg~ 233 (236)
T PRK06483 201 ----------KIEPGEEEIIDLVDYLLTS-CYVTGRSLPVDGGR 233 (236)
T ss_pred ----------ccCCCHHHHHHHHHHHhcC-CCcCCcEEEeCccc
Confidence 1234679999999999863 33455788886654
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-21 Score=173.94 Aligned_cols=213 Identities=15% Similarity=0.099 Sum_probs=151.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----CCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----NAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~~~ 146 (413)
|++|||||+|+||++++++|+++|++|++++|..... ....++.+|++|.+++.+++++ .++
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~--------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 69 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD--------------FPGELFACDLADIEQTAATLAQINEIHPV 69 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc--------------cCceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence 7899999999999999999999999999998764431 1125788999999988877753 478
Q ss_pred cEEEEcCcccCccCC----cCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCC
Q 015080 147 DAVMHFAAVAYVGES----TLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPIN 218 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~ 218 (413)
|+||||||....... .++....+++|+.++.+ +++.+++.+.++||++||...|+.. ...
T Consensus 70 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~~ 137 (234)
T PRK07577 70 DAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGAL------------DRT 137 (234)
T ss_pred cEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCCC------------Cch
Confidence 999999998654332 23344568888888555 4566666777899999998766432 256
Q ss_pred hhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccc
Q 015080 219 PYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDY 295 (413)
Q Consensus 219 ~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 295 (413)
+|+.+|++.+.+++.++.+ .|+++++++||.+..+..... . ...+..........+
T Consensus 138 ~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~-~-----------~~~~~~~~~~~~~~~--------- 196 (234)
T PRK07577 138 SYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQT-R-----------PVGSEEEKRVLASIP--------- 196 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccc-c-----------ccchhHHHHHhhcCC---------
Confidence 8999999999999988776 589999999999987642100 0 000111111111111
Q ss_pred cCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 296 STADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 296 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...+...+|+|++++.++..+. ...++.+.+.++.
T Consensus 197 -------~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~g~~ 232 (234)
T PRK07577 197 -------MRRLGTPEEVAAAIAFLLSDDAGFITGQVLGVDGGG 232 (234)
T ss_pred -------CCCCcCHHHHHHHHHHHhCcccCCccceEEEecCCc
Confidence 1124578999999999987542 2235788886654
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-21 Score=178.71 Aligned_cols=224 Identities=14% Similarity=0.090 Sum_probs=150.0
Q ss_pred CCCceEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG--~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+++ |++|||||++ +||+++|++|+++|++|++++|+.+..+...+...+. ....++++|++|.+++++++++
T Consensus 5 l~~-k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~----g~~~~~~~Dv~d~~~v~~~~~~~ 79 (271)
T PRK06505 5 MQG-KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESL----GSDFVLPCDVEDIASVDAVFEAL 79 (271)
T ss_pred cCC-CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhc----CCceEEeCCCCCHHHHHHHHHHH
Confidence 345 8999999997 9999999999999999999886432212222221211 2235789999999999888765
Q ss_pred ----CCCcEEEEcCcccCcc----C----CcCChHHHHHHHHHHHHHH----HHHHHHcCCCEEEEeccceecCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVG----E----STLDPLKYYHNITSNTLVV----LESMARHGVDTLIYSSTCATYGEPEKMP 207 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~----~----~~~~~~~~~~~n~~~~~~l----l~~~~~~~~~~iV~~SS~~~~~~~~~~~ 207 (413)
.++|+||||||+.... . ..++.+..+++|+.++..+ ++.|++ .++||++||.+...
T Consensus 80 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~--~G~Iv~isS~~~~~------ 151 (271)
T PRK06505 80 EKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPD--GGSMLTLTYGGSTR------ 151 (271)
T ss_pred HHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhcc--CceEEEEcCCCccc------
Confidence 5799999999975321 1 2233445678899985554 455542 36999999965432
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcc
Q 015080 208 ITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGI 284 (413)
Q Consensus 208 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (413)
+.....+|+.||++.+.+++.++.+ +||+++.|.||.|-.+.... . . . ...........
T Consensus 152 -----~~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~-~---~--------~-~~~~~~~~~~~ 213 (271)
T PRK06505 152 -----VMPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAG-I---G--------D-ARAIFSYQQRN 213 (271)
T ss_pred -----cCCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccc-C---c--------c-hHHHHHHHhhc
Confidence 1223668999999999999999988 68999999999987753110 0 0 0 00111111111
Q ss_pred ccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 285 IAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 285 ~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
.+ ...+...+|+|+++++++..... -.++++.+.++.
T Consensus 214 ~p----------------~~r~~~peeva~~~~fL~s~~~~~itG~~i~vdgG~ 251 (271)
T PRK06505 214 SP----------------LRRTVTIDEVGGSALYLLSDLSSGVTGEIHFVDSGY 251 (271)
T ss_pred CC----------------ccccCCHHHHHHHHHHHhCccccccCceEEeecCCc
Confidence 11 11356789999999998874322 244677776654
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-21 Score=176.61 Aligned_cols=219 Identities=16% Similarity=0.097 Sum_probs=151.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
+++|||||+|+||+++++.|+++|+.|++.+|... ...+..... +.++.++.+|++|.+++.+++++ .+
T Consensus 7 ~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~---~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (245)
T PRK12936 7 RKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVE---KLEALAAEL---GERVKIFPANLSDRDEVKALGQKAEADLEG 80 (245)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHH---HHHHHHHHh---CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 89999999999999999999999999888765432 222222222 24688899999999999887654 57
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||...... ..++.+..+++|+.++.++++++ .+.+.++||++||...+.... ..
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-----------~~ 149 (245)
T PRK12936 81 VDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGNP-----------GQ 149 (245)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCCC-----------CC
Confidence 999999999754322 22344567889999977666654 345668999999965432211 24
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
..|+.+|.+.+.+++.++.+ .|+++++++||.+..+... ...+..........
T Consensus 150 ~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~---------------~~~~~~~~~~~~~~--------- 205 (245)
T PRK12936 150 ANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTG---------------KLNDKQKEAIMGAI--------- 205 (245)
T ss_pred cchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhc---------------ccChHHHHHHhcCC---------
Confidence 67999999999999888776 5899999999987654311 00011111111111
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
....+...+|+++++.+++.... ...++++++.+|.
T Consensus 206 -------~~~~~~~~~~ia~~~~~l~~~~~~~~~G~~~~~~~g~ 242 (245)
T PRK12936 206 -------PMKRMGTGAEVASAVAYLASSEAAYVTGQTIHVNGGM 242 (245)
T ss_pred -------CCCCCcCHHHHHHHHHHHcCccccCcCCCEEEECCCc
Confidence 11235679999999988876432 2245789987663
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=177.88 Aligned_cols=167 Identities=14% Similarity=0.099 Sum_probs=128.4
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--CCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--NAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~~~d 147 (413)
|++++||||+|+||.+++++|+++|++|++++|+... .+.+.+. ..++.++.+|++|.+++++++++ ..+|
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~----~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~d 73 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSV----LDELHTQ---SANIFTLAFDVTDHPGTKAALSQLPFIPE 73 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHH----HHHHHHh---cCCCeEEEeeCCCHHHHHHHHHhcccCCC
Confidence 5799999999999999999999999999999875322 1222221 24688999999999999999876 3579
Q ss_pred EEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCCCCCChhH
Q 015080 148 AVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQAPINPYG 221 (413)
Q Consensus 148 vvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~ 221 (413)
++|||||...... ..+..+..+++|+.++.++++++... +.+++|++||....- +......|+
T Consensus 74 ~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~-----------~~~~~~~Y~ 142 (240)
T PRK06101 74 LWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASEL-----------ALPRAEAYG 142 (240)
T ss_pred EEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhcc-----------CCCCCchhh
Confidence 9999998643211 11223457899999999999888753 346899999854321 122356899
Q ss_pred HHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 222 KAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 222 ~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
.+|++.+.+++.++.+ .|+++++++||.++++.
T Consensus 143 asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~ 178 (240)
T PRK06101 143 ASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPL 178 (240)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCC
Confidence 9999999999988754 68999999999999864
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-21 Score=175.69 Aligned_cols=224 Identities=13% Similarity=0.110 Sum_probs=155.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||.+++++|++.|++|+++++.. ..+..+.+.+. +..+.++++|++|.+++.+++++
T Consensus 8 l~~-k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~--~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~ 81 (253)
T PRK08993 8 LEG-KVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE--PTETIEQVTAL---GRRFLSLTADLRKIDGIPALLERAVA 81 (253)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEecCcc--hHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 456 8999999999999999999999999999886532 23333333332 35688899999999999988865
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcC-CCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHG-VDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||...... ..++.+..+++|+.++..+++++ .+.+ .+++|++||...+.....
T Consensus 82 ~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 154 (253)
T PRK08993 82 EFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIR------- 154 (253)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCCCC-------
Confidence 57999999999754332 22345667889999966655554 4443 468999999877643322
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
...|+.+|++.+.+++.++.+ .|++++.++||.+-.+..... . . ........... ++
T Consensus 155 ----~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~-----~-------~-~~~~~~~~~~~---~p 214 (253)
T PRK08993 155 ----VPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQL-----R-------A-DEQRSAEILDR---IP 214 (253)
T ss_pred ----CcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhh-----c-------c-chHHHHHHHhc---CC
Confidence 458999999999999999887 689999999999987632100 0 0 00000111111 11
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCCC-CccEEEecCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK-KVGIYNVGTG 336 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~-~~~~yni~~~ 336 (413)
...+...+|+|+++++++...... .+.++.+.++
T Consensus 215 -------------~~r~~~p~eva~~~~~l~s~~~~~~~G~~~~~dgg 249 (253)
T PRK08993 215 -------------AGRWGLPSDLMGPVVFLASSASDYINGYTIAVDGG 249 (253)
T ss_pred -------------CCCCcCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 123677899999999998754322 3456666443
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-21 Score=175.93 Aligned_cols=165 Identities=14% Similarity=0.077 Sum_probs=130.0
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-CC
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-NA 145 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~ 145 (413)
.+ ++|+||||+|+||+++++.|+++|+ +|++++|+..+..+ .+.++.++.+|++|.+++.++++. .+
T Consensus 5 ~~-~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~----------~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (238)
T PRK08264 5 KG-KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD----------LGPRVVPLQLDVTDPASVAAAAEAASD 73 (238)
T ss_pred CC-CEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh----------cCCceEEEEecCCCHHHHHHHHHhcCC
Confidence 34 8999999999999999999999999 99999875433221 135789999999999999988865 35
Q ss_pred CcEEEEcCcc-cCccC----CcCChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAV-AYVGE----STLDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~-~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
+|+|||+||. ..... ..++....+++|+.++..+++++. +.+.+++|++||...+... .+
T Consensus 74 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~-----------~~ 142 (238)
T PRK08264 74 VTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNF-----------PN 142 (238)
T ss_pred CCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCC-----------CC
Confidence 8999999998 32221 223345578899999877777654 4567899999997765422 23
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
...|+.+|.+.+.+++.++.+ .|+++++++|+.+.++.
T Consensus 143 ~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~ 183 (238)
T PRK08264 143 LGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDM 183 (238)
T ss_pred chHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccc
Confidence 678999999999999998876 48999999999998764
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=181.03 Aligned_cols=167 Identities=16% Similarity=0.124 Sum_probs=125.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+|+||++++++|+++|++|++++|+........+... ..+.++.++.+|++|++++.+++. .++|+||
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~-~~id~vi 78 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAA---RRGLALRVEKLDLTDAIDRAQAAE-WDVDVLL 78 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcceEEEeeCCCHHHHHHHhc-CCCCEEE
Confidence 789999999999999999999999999998875433222222222 123468899999999999998874 4899999
Q ss_pred EcCcccCccCCc----CChHHHHHHHHHHHH----HHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHH
Q 015080 151 HFAAVAYVGEST----LDPLKYYHNITSNTL----VVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGK 222 (413)
Q Consensus 151 ~~Ag~~~~~~~~----~~~~~~~~~n~~~~~----~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~ 222 (413)
||||........ +..+..+++|+.++. .+++.+++.+.++||++||...+... ....+|+.
T Consensus 79 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~-----------~~~~~Y~~ 147 (257)
T PRK09291 79 NNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITG-----------PFTGAYCA 147 (257)
T ss_pred ECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccCC-----------CCcchhHH
Confidence 999976433322 223446778888754 45666667777899999996544221 22568999
Q ss_pred HHHHHHHHHHHHHhh---CCCcEEEEeecceec
Q 015080 223 AKKMAEDIILDFSKN---SDMAVMILRYFNVIG 252 (413)
Q Consensus 223 sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G 252 (413)
||++.|.+++.+..+ .|+++++||||.+..
T Consensus 148 sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t 180 (257)
T PRK09291 148 SKHALEAIAEAMHAELKPFGIQVATVNPGPYLT 180 (257)
T ss_pred HHHHHHHHHHHHHHHHHhcCcEEEEEecCcccc
Confidence 999999999888765 699999999998643
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=179.82 Aligned_cols=224 Identities=13% Similarity=0.050 Sum_probs=149.7
Q ss_pred CCCceEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGas--G~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+ |++|||||+ ++||+++++.|+++|++|++++|+.+..+.+.+...+. +.. .++++|++|.++++++++.
T Consensus 3 l~~-k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~---~~~-~~~~~Dv~d~~~v~~~~~~i 77 (274)
T PRK08415 3 MKG-KKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQEL---GSD-YVYELDVSKPEHFKSLAESL 77 (274)
T ss_pred cCC-cEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhc---CCc-eEEEecCCCHHHHHHHHHHH
Confidence 346 899999997 79999999999999999999887532112222222222 123 6789999999999887765
Q ss_pred ----CCCcEEEEcCcccCc----cC----CcCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYV----GE----STLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMP 207 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~----~~----~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~ 207 (413)
.++|+||||||+... .. ..++.+..+++|+.++.. +++.+++ .++||++||.+...
T Consensus 78 ~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~--~g~Iv~isS~~~~~------ 149 (274)
T PRK08415 78 KKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLND--GASVLTLSYLGGVK------ 149 (274)
T ss_pred HHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhcc--CCcEEEEecCCCcc------
Confidence 679999999997532 11 123345578899998554 5555543 36899999965431
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcc
Q 015080 208 ITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGI 284 (413)
Q Consensus 208 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (413)
+......|+.||++.+.+++.++.+ +|++++.|.||.|..+..... . .+ ..........
T Consensus 150 -----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~-~-----------~~-~~~~~~~~~~ 211 (274)
T PRK08415 150 -----YVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGI-G-----------DF-RMILKWNEIN 211 (274)
T ss_pred -----CCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhcc-c-----------hh-hHHhhhhhhh
Confidence 1223568999999999999999987 689999999999876521100 0 00 0000000000
Q ss_pred ccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCC
Q 015080 285 IAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGK 337 (413)
Q Consensus 285 ~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~ 337 (413)
++ ...+...+|+|+++++++... ....++++.+.+|.
T Consensus 212 ---~p-------------l~r~~~pedva~~v~fL~s~~~~~itG~~i~vdGG~ 249 (274)
T PRK08415 212 ---AP-------------LKKNVSIEEVGNSGMYLLSDLSSGVTGEIHYVDAGY 249 (274)
T ss_pred ---Cc-------------hhccCCHHHHHHHHHHHhhhhhhcccccEEEEcCcc
Confidence 11 123578899999999998743 22344677776653
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-21 Score=175.95 Aligned_cols=224 Identities=11% Similarity=0.036 Sum_probs=153.1
Q ss_pred CCCceEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEecCCCC--------CchhhhhhhhhcCCCCceEEEEccCCCHHH
Q 015080 67 EEGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRG--------NIGAVKVLQELFPEPGRLQFIYADLGDAKA 136 (413)
Q Consensus 67 ~~~~k~vlITGasG--~IG~~la~~L~~~G~~V~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 136 (413)
+++ |++|||||+| +||.+++++|+++|++|+++++.... .....+...++...+..+.++++|++|.++
T Consensus 4 l~~-k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~ 82 (256)
T PRK12859 4 LKN-KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDA 82 (256)
T ss_pred cCC-cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 456 8999999995 89999999999999999987643211 111112222222234578899999999999
Q ss_pred HHHHhhc-----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCC
Q 015080 137 VNKFFSE-----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEP 203 (413)
Q Consensus 137 ~~~~~~~-----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~ 203 (413)
+.+++++ .++|+||||||...... ..+..+..+++|+.+... +++.+++.+.++||++||.....
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-- 160 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQG-- 160 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCC--
Confidence 9888865 46899999999754322 222344568899998544 46777666667999999976542
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHH
Q 015080 204 EKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDA 280 (413)
Q Consensus 204 ~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (413)
+..+...|+.+|++.+.+++.++.+ +|++++.|+||.+-.+.. .......
T Consensus 161 ---------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~------------------~~~~~~~ 213 (256)
T PRK12859 161 ---------PMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWM------------------TEEIKQG 213 (256)
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCC------------------CHHHHHH
Confidence 2334678999999999999999877 689999999999876421 1111111
Q ss_pred HhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 281 ARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 281 ~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
.....+ ...+...+|+|+++.+++.... ...++++.+.++
T Consensus 214 ~~~~~~----------------~~~~~~~~d~a~~~~~l~s~~~~~~~G~~i~~dgg 254 (256)
T PRK12859 214 LLPMFP----------------FGRIGEPKDAARLIKFLASEEAEWITGQIIHSEGG 254 (256)
T ss_pred HHhcCC----------------CCCCcCHHHHHHHHHHHhCccccCccCcEEEeCCC
Confidence 111111 1124578999999998876432 224456666443
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-21 Score=180.42 Aligned_cols=170 Identities=18% Similarity=0.159 Sum_probs=127.8
Q ss_pred CCCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 65 QHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 65 ~~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
..+++ |+++||||+|+||.+++++|+++|++|++.++... ....+...++...+.++.++.+|++|.+++.++++.
T Consensus 8 ~~l~~-k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~--~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~ 84 (306)
T PRK07792 8 TDLSG-KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASA--LDASDVLDEIRAAGAKAVAVAGDISQRATADELVATA 84 (306)
T ss_pred cCCCC-CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCch--hHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35667 99999999999999999999999999999876422 122222233322345788999999999999887765
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHH----Hc-------CCCEEEEeccceecCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMA----RH-------GVDTLIYSSTCATYGEPEK 205 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~-------~~~~iV~~SS~~~~~~~~~ 205 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++. +. ..++||++||...+....
T Consensus 85 ~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~- 163 (306)
T PRK07792 85 VGLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGPV- 163 (306)
T ss_pred HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCCC-
Confidence 57999999999865432 223345578899999887776653 21 126999999976543222
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeec
Q 015080 206 MPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYF 248 (413)
Q Consensus 206 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~ 248 (413)
....|+.+|++.+.+++.++.+ +|+++++|.|+
T Consensus 164 ----------~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg 199 (306)
T PRK07792 164 ----------GQANYGAAKAGITALTLSAARALGRYGVRANAICPR 199 (306)
T ss_pred ----------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCC
Confidence 2567999999999999998886 68999999997
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-21 Score=175.53 Aligned_cols=225 Identities=15% Similarity=0.090 Sum_probs=155.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEE-ecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIV-DNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
+++ |++|||||+|+||.++++.|+++|++|+++ +|+..........+.. .+.++.++.+|++|++++.++++.
T Consensus 3 ~~~-~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (247)
T PRK05565 3 LMG-KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKE---EGGDAIAVKADVSSEEDVENLVEQIV 78 (247)
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh---cCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 445 899999999999999999999999999988 7654333222232222 235688999999999999887754
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+|||+||...... ..+..+..+++|+.++.++++.+ .+.+.+++|++||...+....
T Consensus 79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~-------- 150 (247)
T PRK05565 79 EKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGAS-------- 150 (247)
T ss_pred HHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCCC--------
Confidence 37999999999763322 12234557889999966665554 455677899999966543222
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
...+|+.+|.+.+.+++.++.+ .|+++++++||.+.++... .+.+..........
T Consensus 151 ---~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~---------------~~~~~~~~~~~~~~---- 208 (247)
T PRK05565 151 ---CEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWS---------------SFSEEDKEGLAEEI---- 208 (247)
T ss_pred ---CccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCcccc---------------ccChHHHHHHHhcC----
Confidence 2567999999999998888776 5899999999998765421 11111111111100
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
....+...+|++++++.++.... ...++.+++.++.
T Consensus 209 ------------~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~~~ 245 (247)
T PRK05565 209 ------------PLGRLGKPEEIAKVVLFLASDDASYITGQIITVDGGW 245 (247)
T ss_pred ------------CCCCCCCHHHHHHHHHHHcCCccCCccCcEEEecCCc
Confidence 11245788999999999887533 2345788886553
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-21 Score=178.47 Aligned_cols=225 Identities=13% Similarity=0.057 Sum_probs=149.5
Q ss_pred CCCceEEEEEcC--CChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGG--AGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGa--sG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+ |++||||| +++||+++|++|+++|++|++.+|..+.. +..+.+.. .......++||++|++++++++++
T Consensus 4 ~~~-k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (261)
T PRK08690 4 LQG-KKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLE-ERVRKMAA---ELDSELVFRCDVASDDEINQVFADL 78 (261)
T ss_pred cCC-cEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHH-HHHHHHHh---ccCCceEEECCCCCHHHHHHHHHHH
Confidence 345 89999997 67999999999999999999887643222 22222221 112356789999999999988765
Q ss_pred ----CCCcEEEEcCcccCcc----CC-c----CChHHHHHHHHHHHH----HHHHHHHHcCCCEEEEeccceecCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVG----ES-T----LDPLKYYHNITSNTL----VVLESMARHGVDTLIYSSTCATYGEPEKM 206 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~----~~-~----~~~~~~~~~n~~~~~----~ll~~~~~~~~~~iV~~SS~~~~~~~~~~ 206 (413)
.++|++|||||+.... .. . +..+..+++|+.++. .+++.+++. .++||++||...+.
T Consensus 79 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~-~g~Iv~iss~~~~~----- 152 (261)
T PRK08690 79 GKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGR-NSAIVALSYLGAVR----- 152 (261)
T ss_pred HHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhc-CcEEEEEccccccc-----
Confidence 5799999999986431 11 1 122335678887754 445555544 36899999966542
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhc
Q 015080 207 PITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARG 283 (413)
Q Consensus 207 ~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (413)
+.+....|+.||++.+.+++.++.+ +|++++.|.||.|-.+..... . . .+.......+
T Consensus 153 ------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~----~--------~-~~~~~~~~~~ 213 (261)
T PRK08690 153 ------AIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGI----A--------D-FGKLLGHVAA 213 (261)
T ss_pred ------CCCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcC----C--------c-hHHHHHHHhh
Confidence 1223678999999999999998876 689999999999876531100 0 0 0111111111
Q ss_pred cccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 284 IIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 284 ~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
..| ...+...+|+|+++++++.... ...++++.+.+|.
T Consensus 214 ~~p----------------~~r~~~peevA~~v~~l~s~~~~~~tG~~i~vdgG~ 252 (261)
T PRK08690 214 HNP----------------LRRNVTIEEVGNTAAFLLSDLSSGITGEITYVDGGY 252 (261)
T ss_pred cCC----------------CCCCCCHHHHHHHHHHHhCcccCCcceeEEEEcCCc
Confidence 111 1246788999999999998432 2344677776553
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=177.83 Aligned_cols=222 Identities=19% Similarity=0.098 Sum_probs=157.6
Q ss_pred EEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-CCCcEEEEc
Q 015080 74 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-NAFDAVMHF 152 (413)
Q Consensus 74 lITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~~dvvi~~ 152 (413)
|||||+|+||++++++|+++|++|++++|+... .......+. .+.+++++.+|++|++++.+++++ .++|+||||
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~---~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ 76 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDR---LAAAARALG-GGAPVRTAALDITDEAAVDAFFAEAGPFDHVVIT 76 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHHh-cCCceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence 699999999999999999999999999875332 222222221 135688999999999999998876 468999999
Q ss_pred CcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 153 AAVAYVGE----STLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 153 Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
||...... ..++.+..+++|+.++.+++++....+.++||++||...+... .+...|+.+|++.+
T Consensus 77 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~~~-----------~~~~~Y~~sK~a~~ 145 (230)
T PRK07041 77 AADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVRPS-----------ASGVLQGAINAALE 145 (230)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcCCC-----------CcchHHHHHHHHHH
Confidence 99754332 2234556788999999999886665567899999998876432 23678999999999
Q ss_pred HHHHHHHhh-CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecc
Q 015080 229 DIILDFSKN-SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307 (413)
Q Consensus 229 ~~~~~~~~~-~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i 307 (413)
.+++.++.+ .++++++++||.+.++...... + ..............+ . ..+.
T Consensus 146 ~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~---~--------~~~~~~~~~~~~~~~---~-------------~~~~ 198 (230)
T PRK07041 146 ALARGLALELAPVRVNTVSPGLVDTPLWSKLA---G--------DAREAMFAAAAERLP---A-------------RRVG 198 (230)
T ss_pred HHHHHHHHHhhCceEEEEeecccccHHHHhhh---c--------cchHHHHHHHHhcCC---C-------------CCCc
Confidence 999999887 4689999999988765311000 0 000111111211111 0 1235
Q ss_pred cHHHHHHHHHHHHHhcCCCCccEEEecCCCc
Q 015080 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKG 338 (413)
Q Consensus 308 ~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~ 338 (413)
..+|+|++++.++.... ..+++|++.++++
T Consensus 199 ~~~dva~~~~~l~~~~~-~~G~~~~v~gg~~ 228 (230)
T PRK07041 199 QPEDVANAILFLAANGF-TTGSTVLVDGGHA 228 (230)
T ss_pred CHHHHHHHHHHHhcCCC-cCCcEEEeCCCee
Confidence 67999999999987542 3357999987764
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-21 Score=176.64 Aligned_cols=227 Identities=14% Similarity=0.060 Sum_probs=152.0
Q ss_pred CCCceEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGas--G~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+ |+++||||+ ++||.++|++|+++|++|++++|..+..+.+.+...+.. +.++.++++|++|++++++++++
T Consensus 5 ~~~-k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 5 LEG-KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--GQESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred cCC-CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--CCceEEEecCCCCHHHHHHHHHHH
Confidence 346 899999997 899999999999999999998875544333333333331 25688899999999999887764
Q ss_pred ----CCCcEEEEcCcccCc----cC----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYV----GE----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~----~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|++|||||+... .. ..+.....+++|+.+...+++++... ..++||++||....-
T Consensus 82 ~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~-------- 153 (257)
T PRK08594 82 KEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGER-------- 153 (257)
T ss_pred HHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCcc--------
Confidence 679999999997532 11 11223346778888865544444321 236999999965431
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
+.....+|+.||++.+.+++.++.+ .|++++.|.||.+-.+..... . .+ ..........
T Consensus 154 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~----~--------~~-~~~~~~~~~~-- 215 (257)
T PRK08594 154 ---VVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGV----G--------GF-NSILKEIEER-- 215 (257)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhh----c--------cc-cHHHHHHhhc--
Confidence 1223568999999999999999887 589999999999876521100 0 00 0001111111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCC
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTG 336 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~ 336 (413)
. ....+...+|+++++++++..... ..+.++.+.+|
T Consensus 216 -~-------------p~~r~~~p~~va~~~~~l~s~~~~~~tG~~~~~dgg 252 (257)
T PRK08594 216 -A-------------PLRRTTTQEEVGDTAAFLFSDLSRGVTGENIHVDSG 252 (257)
T ss_pred -C-------------CccccCCHHHHHHHHHHHcCcccccccceEEEECCc
Confidence 1 112357889999999998874332 24467777554
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=177.42 Aligned_cols=171 Identities=15% Similarity=0.114 Sum_probs=130.1
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--CCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--NAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~~~d 147 (413)
||+|+||||+|+||.++++.|+++|++|++++|+..+.+...+.+... .+.++.++++|++|++++++++++ .++|
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR--GAVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh--cCCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 589999999999999999999999999999988654433333333221 124789999999999999888765 3579
Q ss_pred EEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCCh
Q 015080 148 AVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINP 219 (413)
Q Consensus 148 vvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~ 219 (413)
+||||||....... .++....+++|+.++.++++++ .+.+.+++|++||...... ......
T Consensus 79 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-----------~~~~~~ 147 (243)
T PRK07102 79 IVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRG-----------RASNYV 147 (243)
T ss_pred EEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCC-----------CCCCcc
Confidence 99999997543321 2223457889999977766554 4456789999999654321 122457
Q ss_pred hHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 220 YGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 220 Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
|+.+|++.+.+++.++.+ .|+++++++||.+.++
T Consensus 148 Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~ 184 (243)
T PRK07102 148 YGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTP 184 (243)
T ss_pred cHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCh
Confidence 999999999999998765 5899999999999876
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=179.16 Aligned_cols=168 Identities=16% Similarity=0.116 Sum_probs=128.8
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc------
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE------ 143 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~------ 143 (413)
||++|||||||+||++++++|+++|++|++++|+....++..+ .. . +..+.++.+|++|.+++.++++.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~---~~-~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA---EL-G-AGNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH---Hh-c-CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999999999875433222222 22 1 25789999999999999887753
Q ss_pred CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 144 NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
.++|+||||||....... .++.+..+++|+.++..+++++ ++.+.++||++||...+....
T Consensus 76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~----------- 144 (260)
T PRK08267 76 GRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQP----------- 144 (260)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCC-----------
Confidence 478999999998654332 2334567889999977776555 455668999999965432211
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
....|+.||++.+.+++.++.+ .|+++++++||.+..+
T Consensus 145 ~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~ 185 (260)
T PRK08267 145 GLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTA 185 (260)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCc
Confidence 2568999999999999998866 5899999999998764
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-21 Score=174.69 Aligned_cols=170 Identities=15% Similarity=0.148 Sum_probs=131.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
++++||||+|+||.+++++|+++|++|++++|+..+.++..+.+. ..+.++.++.+|+++++++.++++. .+
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVE---AYGVKVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---HhCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 789999999999999999999999999999876543333333332 2235788999999999999888864 47
Q ss_pred CcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||....... .++....+++|+.++.++++++. +.+.+++|++||...+... .+.
T Consensus 85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~-----------~~~ 153 (239)
T PRK07666 85 IDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGA-----------AVT 153 (239)
T ss_pred ccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCC-----------CCC
Confidence 9999999997543321 22335578899999777666654 4567899999997654322 235
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
..|+.+|.+.+.+++.++.+ .|+++++++||.+.++.
T Consensus 154 ~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~ 193 (239)
T PRK07666 154 SAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDM 193 (239)
T ss_pred cchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcc
Confidence 67999999999999888765 68999999999998763
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.1e-21 Score=175.55 Aligned_cols=225 Identities=14% Similarity=0.071 Sum_probs=150.1
Q ss_pred CCCceEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGas--G~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+ |++|||||+ ++||.+++++|+++|++|++++|+.+..+.+.+..++. ..+.++.+|++|.++++++++.
T Consensus 8 ~~~-k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~ 82 (258)
T PRK07533 8 LAG-KRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL----DAPIFLPLDVREPGQLEAVFARI 82 (258)
T ss_pred cCC-CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh----ccceEEecCcCCHHHHHHHHHHH
Confidence 456 999999998 59999999999999999999987643222222222222 2356789999999999887765
Q ss_pred ----CCCcEEEEcCcccCcc----C----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVG----E----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~----~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|++|||||+.... . ..++.+..+++|+.+...+++.+... ..++||++||.....
T Consensus 83 ~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~-------- 154 (258)
T PRK07533 83 AEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEK-------- 154 (258)
T ss_pred HHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccccc--------
Confidence 5799999999975321 1 22334567889999955544443321 236899999965421
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
+......|+.||++.+.+++.++.+ +|++++.|.||.|-.+..... . .+ ...........+
T Consensus 155 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~----~--------~~-~~~~~~~~~~~p 218 (258)
T PRK07533 155 ---VVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGI----D--------DF-DALLEDAAERAP 218 (258)
T ss_pred ---CCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhcc----C--------Cc-HHHHHHHHhcCC
Confidence 1223568999999999999999887 689999999999876531100 0 00 111111111111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCC
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTG 336 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~ 336 (413)
...+...+|+|+++++++... ..-.++.+.+.++
T Consensus 219 ----------------~~r~~~p~dva~~~~~L~s~~~~~itG~~i~vdgg 253 (258)
T PRK07533 219 ----------------LRRLVDIDDVGAVAAFLASDAARRLTGNTLYIDGG 253 (258)
T ss_pred ----------------cCCCCCHHHHHHHHHHHhChhhccccCcEEeeCCc
Confidence 124578899999999988743 2234467766544
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=182.10 Aligned_cols=172 Identities=19% Similarity=0.121 Sum_probs=130.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||.++++.|+++|++|++++|+... +.+..+++. .+..+..+.+|++|.+++.+++++
T Consensus 7 l~g-k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---l~~~~~~l~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (296)
T PRK05872 7 LAG-KVVVVTGAARGIGAELARRLHARGAKLALVDLEEAE---LAALAAELG-GDDRVLTVVADVTDLAAMQAAAEEAVE 81 (296)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHhc-CCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 456 899999999999999999999999999999875432 222223332 134567778999999999887765
Q ss_pred --CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHHc---CCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMARH---GVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||+...... .++.+..+++|+.++.++++.+... +.++||++||...+....
T Consensus 82 ~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 151 (296)
T PRK05872 82 RFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAAP---------- 151 (296)
T ss_pred HcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCCC----------
Confidence 579999999998643322 2233557889999977766665421 347999999977664322
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
....|+.||++.+.+++.++.+ .|+++++++||.+..+.
T Consensus 152 -~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~ 193 (296)
T PRK05872 152 -GMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDL 193 (296)
T ss_pred -CchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchh
Confidence 2678999999999999998876 68999999999987764
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-21 Score=173.33 Aligned_cols=223 Identities=16% Similarity=0.109 Sum_probs=154.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+|+||.+++++|+++|++|+++.|. +.....+...+....+.++.++.+|++|++++.++++. .+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGP--NEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGP 78 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 579999999999999999999999999988762 22233333332222235788999999999998887754 56
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||...... ..++....++.|+.++.. +++.+++.+.++||++||....... .+.
T Consensus 79 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~~~-----------~~~ 147 (242)
T TIGR01829 79 IDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQKGQ-----------FGQ 147 (242)
T ss_pred CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCC-----------CCc
Confidence 999999999754322 222345567889998555 6666777777899999996543221 235
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
..|+.+|.+.+.+++.++.+ .|+++++++||.+.++... .+.+..........+
T Consensus 148 ~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~---------------~~~~~~~~~~~~~~~-------- 204 (242)
T TIGR01829 148 TNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVM---------------AMREDVLNSIVAQIP-------- 204 (242)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCcccc---------------ccchHHHHHHHhcCC--------
Confidence 67999999999999988776 5899999999999987421 111222222222211
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...+...+|+++++..++.... ...++.+.+.++.
T Consensus 205 --------~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~gg~ 240 (242)
T TIGR01829 205 --------VGRLGRPEEIAAAVAFLASEEAGYITGATLSINGGL 240 (242)
T ss_pred --------CCCCcCHHHHHHHHHHHcCchhcCccCCEEEecCCc
Confidence 1124567899999887776432 2345788887663
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=175.35 Aligned_cols=208 Identities=14% Similarity=0.078 Sum_probs=147.6
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-CCCcE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-NAFDA 148 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~~dv 148 (413)
||++|||||+|+||+++++.|+++ ++|++++|+... ..+..+.. ..++++++|++|.+++.++++. .++|+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~---~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~id~ 74 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAER---LDELAAEL----PGATPFPVDLTDPEAIAAAVEQLGRLDV 74 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHH---HHHHHHHh----ccceEEecCCCCHHHHHHHHHhcCCCCE
Confidence 379999999999999999999999 999999875322 11111111 3578899999999999998865 36999
Q ss_pred EEEcCcccCccCCc----CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChh
Q 015080 149 VMHFAAVAYVGEST----LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPY 220 (413)
Q Consensus 149 vi~~Ag~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y 220 (413)
|||+||........ +.....+++|+.+ ++++++.+++. .+++|++||...++... +..+|
T Consensus 75 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~v~~ss~~~~~~~~-----------~~~~y 142 (227)
T PRK08219 75 LVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA-HGHVVFINSGAGLRANP-----------GWGSY 142 (227)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEcchHhcCcCC-----------CCchH
Confidence 99999975432211 2234457888888 55666666665 46999999987664322 25689
Q ss_pred HHHHHHHHHHHHHHHhh-CC-CcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCC
Q 015080 221 GKAKKMAEDIILDFSKN-SD-MAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTA 298 (413)
Q Consensus 221 ~~sK~~~e~~~~~~~~~-~g-i~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 298 (413)
+.+|.+.+.+++.++.+ .+ +++++++||.+.++.. ..+... ...
T Consensus 143 ~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~-------------------~~~~~~--~~~------------- 188 (227)
T PRK08219 143 AASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQ-------------------RGLVAQ--EGG------------- 188 (227)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHh-------------------hhhhhh--hcc-------------
Confidence 99999999999988765 34 8999999987765421 000000 000
Q ss_pred CCceeeecccHHHHHHHHHHHHHhcCCCCccEEEec
Q 015080 299 DGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVG 334 (413)
Q Consensus 299 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~ 334 (413)
......+++++|++++++.+++.+... .+|++.
T Consensus 189 -~~~~~~~~~~~dva~~~~~~l~~~~~~--~~~~~~ 221 (227)
T PRK08219 189 -EYDPERYLRPETVAKAVRFAVDAPPDA--HITEVV 221 (227)
T ss_pred -ccCCCCCCCHHHHHHHHHHHHcCCCCC--ccceEE
Confidence 001236799999999999999875543 577774
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=174.24 Aligned_cols=227 Identities=14% Similarity=0.086 Sum_probs=155.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||.+++++|+++|++|+++.|... +...+...++...+.++.++.+|++|.+++.++++.
T Consensus 5 ~~~-k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 81 (261)
T PRK08936 5 LEG-KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDE--EEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVK 81 (261)
T ss_pred CCC-CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 446 89999999999999999999999999988776322 222222222222245688899999999998887754
Q ss_pred --CCCcEEEEcCcccCccCCc----CChHHHHHHHHHHH----HHHHHHHHHcC-CCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSNT----LVVLESMARHG-VDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~----~~ll~~~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||........ +..+..+++|+.++ +.+++.+++.+ .++||++||...+.
T Consensus 82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~----------- 150 (261)
T PRK08936 82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQI----------- 150 (261)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccC-----------
Confidence 4799999999975443322 23445688998775 45667777664 47999999965432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
+..+..+|+.+|++.+.+++.++.+ .|+++++|+||.+.++.....+ ..+..........+
T Consensus 151 ~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~-------------~~~~~~~~~~~~~~--- 214 (261)
T PRK08936 151 PWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKF-------------ADPKQRADVESMIP--- 214 (261)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCcccccc-------------CCHHHHHHHHhcCC---
Confidence 3334678999999999999998877 5899999999999887532110 00111111111111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTG 336 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~ 336 (413)
...+...+|+++++.+++..... ..+..+.+.++
T Consensus 215 -------------~~~~~~~~~va~~~~~l~s~~~~~~~G~~i~~d~g 249 (261)
T PRK08936 215 -------------MGYIGKPEEIAAVAAWLASSEASYVTGITLFADGG 249 (261)
T ss_pred -------------CCCCcCHHHHHHHHHHHcCcccCCccCcEEEECCC
Confidence 12467789999999998874322 23345666544
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=178.09 Aligned_cols=170 Identities=21% Similarity=0.214 Sum_probs=127.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+++||||+|+||.+++++|++.|++|++++|+....++.. +++...+..+.++.+|++|++++.++++. .+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~---~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 77 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETA---KEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGG 77 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---HHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999999999999987543322222 33322345688999999999999887754 46
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHH----HHHHHcC-CCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVL----ESMARHG-VDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll----~~~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
+|+||||||...... ..++.+..+++|+.++..++ +.+++.+ .+++|++||....... ..
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------~~ 146 (254)
T TIGR02415 78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGN-----------PI 146 (254)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCC-----------CC
Confidence 899999999754322 22334457889999876554 4444443 3699999996543221 12
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
..+|+.+|++.+.+++.++.+ .++++++++||.+..+.
T Consensus 147 ~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~ 187 (254)
T TIGR02415 147 LSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPM 187 (254)
T ss_pred CcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChh
Confidence 678999999999999998877 48999999999987653
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=182.65 Aligned_cols=187 Identities=18% Similarity=0.121 Sum_probs=148.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
...+ ++++|||||++||.++|++|+.+|++|++.+|+....+++.+.+++.... ..+.++++|+++..+++++.+.
T Consensus 32 ~~~~-~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~-~~i~~~~lDLssl~SV~~fa~~~~ 109 (314)
T KOG1208|consen 32 DLSG-KVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKAN-QKIRVIQLDLSSLKSVRKFAEEFK 109 (314)
T ss_pred cCCC-cEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCHHHHHHHHHHHH
Confidence 4556 89999999999999999999999999999999877777777777763333 6788899999999999988876
Q ss_pred ---CCCcEEEEcCcccCccC--CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCC-CCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE--STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPE-KMPITEETP 213 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~--~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~-~~~~~e~~~ 213 (413)
.+.|++|||||++.++. ..+..+..+.+|+.| +..+++.++.+...|||++||........ .....|...
T Consensus 110 ~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~~~~~~~~~l~~~~~~ 189 (314)
T KOG1208|consen 110 KKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILGGGKIDLKDLSGEKAK 189 (314)
T ss_pred hcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccccCccchhhccchhcc
Confidence 67999999999987655 345678899999999 66677888877668999999976511111 111222222
Q ss_pred -CCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEeecceecCC
Q 015080 214 -QAPINPYGKAKKMAEDIILDFSKNS--DMAVMILRYFNVIGSD 254 (413)
Q Consensus 214 -~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~lrp~~v~G~~ 254 (413)
......|+.||.+...++.+++++. |+.+..+.||.|.++.
T Consensus 190 ~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~ 233 (314)
T KOG1208|consen 190 LYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTG 233 (314)
T ss_pred CccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccc
Confidence 3334469999999999999998883 7999999999999874
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=178.67 Aligned_cols=206 Identities=20% Similarity=0.189 Sum_probs=145.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc------C
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE------N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~------~ 144 (413)
|+|+||||+|+||.++++.|+++|++|++++|+..+.+ .+.+ .++..+.+|++|.+++.++++. .
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~----~~~~-----~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 73 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVA----RMNS-----LGFTGILLDLDDPESVERAADEVIALTDN 73 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhH----HHHh-----CCCeEEEeecCCHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999999999887543221 1111 2478899999999988776644 4
Q ss_pred CCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
++|.+|||||...... ..+..+..+++|+.++.+ +++.+++.+.+++|++||...+.. ...
T Consensus 74 ~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~-----------~~~ 142 (256)
T PRK08017 74 RLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLIS-----------TPG 142 (256)
T ss_pred CCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcccccC-----------CCC
Confidence 6899999999754322 223345678899998665 577777777889999999654322 123
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
..+|+.+|++.|.+.+.++.+ .++++++++||.+..+.. ..+... ... .+...
T Consensus 143 ~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~-------------------~~~~~~-~~~---~~~~~- 198 (256)
T PRK08017 143 RGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFT-------------------DNVNQT-QSD---KPVEN- 198 (256)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchh-------------------hcccch-hhc---cchhh-
Confidence 678999999999998876543 689999999988765321 000000 000 11110
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhcCC
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERAQP 325 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 325 (413)
.+...+.+++++|+++++..+++++..
T Consensus 199 -----~~~~~~~~~~~~d~a~~~~~~~~~~~~ 225 (256)
T PRK08017 199 -----PGIAARFTLGPEAVVPKLRHALESPKP 225 (256)
T ss_pred -----hHHHhhcCCCHHHHHHHHHHHHhCCCC
Confidence 122334679999999999999986654
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=171.91 Aligned_cols=215 Identities=15% Similarity=0.157 Sum_probs=150.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-CC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-NA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~ 145 (413)
+++ |+++||||+|+||.++++.|+++|++|++++|...... ..++.++.+|++++ ++++++. .+
T Consensus 3 l~~-k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~------------~~~~~~~~~D~~~~--~~~~~~~~~~ 67 (235)
T PRK06550 3 FMT-KTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDL------------SGNFHFLQLDLSDD--LEPLFDWVPS 67 (235)
T ss_pred CCC-CEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCccccc------------CCcEEEEECChHHH--HHHHHHhhCC
Confidence 446 89999999999999999999999999999987533210 24688999999998 4444433 67
Q ss_pred CcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
+|+||||||.... .. ..++.+..+++|+.++.++++++. +.+.++||++||...+... ..
T Consensus 68 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------~~ 136 (235)
T PRK06550 68 VDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAG-----------GG 136 (235)
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC-----------CC
Confidence 9999999996421 11 223345678899999777666654 4556799999997654322 12
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
...|+.+|++.+.+++.++.+ .|+++++++||.+.++.....+ .............
T Consensus 137 ~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~-------------~~~~~~~~~~~~~-------- 195 (235)
T PRK06550 137 GAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADF-------------EPGGLADWVARET-------- 195 (235)
T ss_pred CcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCccccccc-------------CchHHHHHHhccC--------
Confidence 567999999999999998887 4899999999999887422110 0011111111111
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
....+...+|+|++++.++.... ...+.++.+.+|
T Consensus 196 --------~~~~~~~~~~~a~~~~~l~s~~~~~~~g~~~~~~gg 231 (235)
T PRK06550 196 --------PIKRWAEPEEVAELTLFLASGKADYMQGTIVPIDGG 231 (235)
T ss_pred --------CcCCCCCHHHHHHHHHHHcChhhccCCCcEEEECCc
Confidence 12346788999999999986432 223467777655
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=172.33 Aligned_cols=219 Identities=17% Similarity=0.151 Sum_probs=154.2
Q ss_pred EEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CCCc
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NAFD 147 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~~d 147 (413)
|||||++|+||++++++|+++|++|++++|... .........+...+..+.++.+|++|.+++++++++ .++|
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSE--EGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPID 78 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCch--hHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999987542 122222222222234688999999999999887754 4689
Q ss_pred EEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHH----cCCCEEEEeccce-ecCCCCCCCCCCCCCCCCCC
Q 015080 148 AVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMAR----HGVDTLIYSSTCA-TYGEPEKMPITEETPQAPIN 218 (413)
Q Consensus 148 vvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~iV~~SS~~-~~~~~~~~~~~e~~~~~~~~ 218 (413)
+|||+||...... ..+..+..+++|+.++..+++.+.. .+.+++|++||.. .++.. +..
T Consensus 79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~------------~~~ 146 (239)
T TIGR01830 79 ILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNA------------GQA 146 (239)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCC------------CCc
Confidence 9999999754321 2234566788999998888887764 4567999999965 44422 256
Q ss_pred hhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccc
Q 015080 219 PYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDY 295 (413)
Q Consensus 219 ~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 295 (413)
.|+.+|.+.+.+++.++.+ .|+++++++||.+.++... .+...+........+
T Consensus 147 ~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~---------------~~~~~~~~~~~~~~~--------- 202 (239)
T TIGR01830 147 NYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTD---------------KLSEKVKKKILSQIP--------- 202 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhh---------------hcChHHHHHHHhcCC---------
Confidence 7999999999999888776 6899999999988665311 111112222222111
Q ss_pred cCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 296 STADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 296 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
...+.+++|++++++.++.... ...+++||+.++
T Consensus 203 -------~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 203 -------LGRFGTPEEVANAVAFLASDEASYITGQVIHVDGG 237 (239)
T ss_pred -------cCCCcCHHHHHHHHHHHhCcccCCcCCCEEEeCCC
Confidence 1236689999999998885432 234579999654
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=179.87 Aligned_cols=165 Identities=13% Similarity=0.120 Sum_probs=126.3
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
||++|||||+|+||.+++++|+++|++|++++|+... . +.+.. .++.++.+|++|.++++++++. .
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~---~-~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 71 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAED---V-EALAA-----AGFTAVQLDVNDGAALARLAEELEAEHG 71 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHH---H-HHHHH-----CCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999999875322 1 11111 2477899999999999887754 4
Q ss_pred CCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHH---cCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMAR---HGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~---~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
++|+||||||....... .++.+..+++|+.++..+++++.. .+.+++|++||...+... ...
T Consensus 72 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~-----------~~~ 140 (274)
T PRK05693 72 GLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLVT-----------PFA 140 (274)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCCC-----------CCc
Confidence 79999999997543322 233455788999997666665532 245789999996654321 225
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
.+|+.+|++.+.+++.++.+ .|+++++++||.|.++.
T Consensus 141 ~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~ 180 (274)
T PRK05693 141 GAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQF 180 (274)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCcccccc
Confidence 68999999999999988876 69999999999998763
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=176.89 Aligned_cols=222 Identities=16% Similarity=0.148 Sum_probs=150.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+|+||||+|+||.+++++|+++|++|++++|+....+. ...++ ...++++|++|++++++++++
T Consensus 5 ~~~-~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~---~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~ 75 (255)
T PRK06057 5 LAG-RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKA---AADEV-----GGLFVPTDVTDEDAVNALFDTAAE 75 (255)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH---HHHHc-----CCcEEEeeCCCHHHHHHHHHHHHH
Confidence 345 899999999999999999999999999999875432222 11221 125789999999999888865
Q ss_pred --CCCcEEEEcCcccCcc--C----CcCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccce-ecCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVG--E----STLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCA-TYGEPEKMPITE 210 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~--~----~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~-~~~~~~~~~~~e 210 (413)
.++|+||||||...+. . ..+..+..+++|+.++.. +++.+++.+.+++|++||.. +++..
T Consensus 76 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~------- 148 (255)
T PRK06057 76 TYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSA------- 148 (255)
T ss_pred HcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCCC-------
Confidence 4789999999975431 1 122345678899998655 44555556667999999954 44422
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
.+...|+.+|++.+.+++.++.+ .|+++++++||.+.++.....+. .-.....+... .
T Consensus 149 ----~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~-----------~~~~~~~~~~~---~- 209 (255)
T PRK06057 149 ----TSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFA-----------KDPERAARRLV---H- 209 (255)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhcc-----------CCHHHHHHHHh---c-
Confidence 12567999999999988887665 58999999999998875321100 00000001010 0
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCC
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTG 336 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~ 336 (413)
++ ...+..++|+++++..++... ....++.+.+.++
T Consensus 210 ~~-------------~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~~g 246 (255)
T PRK06057 210 VP-------------MGRFAEPEEIAAAVAFLASDDASFITASTFLVDGG 246 (255)
T ss_pred CC-------------CCCCcCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 11 125788999999988877643 2223467777554
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-21 Score=177.04 Aligned_cols=226 Identities=16% Similarity=0.072 Sum_probs=155.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||.+++++|+++|++|++++|+........+.+.. .+.++.++.+|++|++++.+++++
T Consensus 7 ~~~-k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (264)
T PRK07576 7 FAG-KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQ---AGPEGLGVSADVRDYAAVEAAFAQIAD 82 (264)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH---hCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 445 8999999999999999999999999999998754332222222322 234678899999999999888765
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHc---CCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARH---GVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||...... ..++....+++|+.++.+++.++... ..++||++||...+.. .
T Consensus 83 ~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~-----------~ 151 (264)
T PRK07576 83 EFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVP-----------M 151 (264)
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccC-----------C
Confidence 46899999998643222 22234456889999988877666532 2369999999765422 2
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHH--HHHHHHhcccccee
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISG--ACFDAARGIIAGLK 289 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~ 289 (413)
.....|+.+|++.+.+++.++.+ .|+++++++||.+.+..... .+.+ ......... +
T Consensus 152 ~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~--------------~~~~~~~~~~~~~~~---~- 213 (264)
T PRK07576 152 PMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMA--------------RLAPSPELQAAVAQS---V- 213 (264)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHh--------------hcccCHHHHHHHHhc---C-
Confidence 23678999999999999999877 58999999999987532100 0000 000111111 1
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
....+...+|+|++++.++..... ..+..+.+.++.
T Consensus 214 ------------~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~~~gg~ 250 (264)
T PRK07576 214 ------------PLKRNGTKQDIANAALFLASDMASYITGVVLPVDGGW 250 (264)
T ss_pred ------------CCCCCCCHHHHHHHHHHHcChhhcCccCCEEEECCCc
Confidence 112457889999999999975322 234566776654
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-21 Score=176.54 Aligned_cols=226 Identities=16% Similarity=0.097 Sum_probs=155.3
Q ss_pred CCCceEEEEEcCCC-hHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 67 EEGVTHVLVTGGAG-YIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG-~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
..+ |++|||||+| +||.++++.|+++|++|++++|+..+.++..+.+++..+ ..++.++++|++++++++++++.
T Consensus 15 ~~~-k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~ 92 (262)
T PRK07831 15 LAG-KVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELG-LGRVEAVVCDVTSEAQVDALIDAAV 92 (262)
T ss_pred cCC-CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcC-CceEEEEEccCCCHHHHHHHHHHHH
Confidence 345 8999999997 899999999999999999988755444444333333221 13688899999999999887764
Q ss_pred ---CCCcEEEEcCcccCccCCc----CChHHHHHHHHHHHHHHHH----HHHHcC-CCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLVVLE----SMARHG-VDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~ll~----~~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||........ ++....+++|+.++..+++ .+++.+ .++||++||...+..
T Consensus 93 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~--------- 163 (262)
T PRK07831 93 ERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRA--------- 163 (262)
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCC---------
Confidence 5799999999975432222 2344467789988665544 444444 579999998654321
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
..+...|+.+|++.+.+++.++.+ +|+++++|+||.+..|.... ..............+
T Consensus 164 --~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~--------------~~~~~~~~~~~~~~~-- 225 (262)
T PRK07831 164 --QHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAK--------------VTSAELLDELAAREA-- 225 (262)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccccc--------------ccCHHHHHHHHhcCC--
Confidence 223668999999999999999877 68999999999998874211 001111222222111
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecC
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGT 335 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~ 335 (413)
...+...+|+|+++++++.... ...++++.+.+
T Consensus 226 --------------~~r~~~p~~va~~~~~l~s~~~~~itG~~i~v~~ 259 (262)
T PRK07831 226 --------------FGRAAEPWEVANVIAFLASDYSSYLTGEVVSVSS 259 (262)
T ss_pred --------------CCCCcCHHHHHHHHHHHcCchhcCcCCceEEeCC
Confidence 1235678999999999887532 22446666654
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-20 Score=173.33 Aligned_cols=232 Identities=14% Similarity=0.068 Sum_probs=155.3
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
.+ |+++||||+|+||+++++.|+++|++|++++|... ..+..+.+. ..+.++.++.+|+++.+++++++++
T Consensus 5 ~~-~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~---~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 79 (263)
T PRK08226 5 TG-KTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELC---GRGHRCTAVVADVRDPASVAAAIKRAKEK 79 (263)
T ss_pred CC-CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHH---HhCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 35 89999999999999999999999999999987532 112222222 2235688899999999999888765
Q ss_pred -CCCcEEEEcCcccCccCCc----CChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||........ +..+..+++|+.++..+++++. +.+.++||++||..... .+.
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----------~~~ 149 (263)
T PRK08226 80 EGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDM----------VAD 149 (263)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc----------cCC
Confidence 4799999999975443322 2233468899999877666654 44567999999965311 011
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
.....|+.+|++.+.+++.++.+ .|++++.++||.+.++......... .+ .........+....+
T Consensus 150 ~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~-~~------~~~~~~~~~~~~~~p----- 217 (263)
T PRK08226 150 PGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQS-NP------EDPESVLTEMAKAIP----- 217 (263)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhc-cC------CCcHHHHHHHhccCC-----
Confidence 23568999999999999999877 4899999999999887421100000 00 001112222222111
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCC
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGK 337 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~ 337 (413)
...+...+|+|+++.+++... ....++++.+.+|.
T Consensus 218 -----------~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~dgg~ 253 (263)
T PRK08226 218 -----------LRRLADPLEVGELAAFLASDESSYLTGTQNVIDGGS 253 (263)
T ss_pred -----------CCCCCCHHHHHHHHHHHcCchhcCCcCceEeECCCc
Confidence 123568899999998887532 22344677776553
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=162.03 Aligned_cols=223 Identities=16% Similarity=0.086 Sum_probs=164.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
++. |.++||||+++||++++..|++.|++|.+.+++....+++++.+ .+ +.+...+.||++++.+++..+++
T Consensus 12 ~~s-k~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L---~g-~~~h~aF~~DVS~a~~v~~~l~e~~k 86 (256)
T KOG1200|consen 12 LMS-KVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDL---GG-YGDHSAFSCDVSKAHDVQNTLEEMEK 86 (256)
T ss_pred Hhc-ceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhc---CC-CCccceeeeccCcHHHHHHHHHHHHH
Confidence 344 89999999999999999999999999999987655444444443 22 25677899999999999887766
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHH------cCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMAR------HGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~------~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
..+++|+||||+..... ..++++..+.+|+.|+..+.+++.+ .+..+||++||.-..-...+
T Consensus 87 ~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~G------ 160 (256)
T KOG1200|consen 87 SLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFG------ 160 (256)
T ss_pred hcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhccccccc------
Confidence 67999999999975433 3456677788999995555544432 23349999999543211122
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
.+-|++||...-.+.+..++| .+|++.++.||+|-.|... .+.+...+.+.+..| .
T Consensus 161 -----QtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~---------------~mp~~v~~ki~~~iP-m 219 (256)
T KOG1200|consen 161 -----QTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTE---------------AMPPKVLDKILGMIP-M 219 (256)
T ss_pred -----chhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhhh---------------hcCHHHHHHHHccCC-c
Confidence 567999999998888888877 6899999999999988643 566777888777655 2
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCC-CccEEEecCC
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK-KVGIYNVGTG 336 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~-~~~~yni~~~ 336 (413)
..+-..+|+|..+.+++...... .+..+.+++|
T Consensus 220 ---------------gr~G~~EevA~~V~fLAS~~ssYiTG~t~evtGG 253 (256)
T KOG1200|consen 220 ---------------GRLGEAEEVANLVLFLASDASSYITGTTLEVTGG 253 (256)
T ss_pred ---------------cccCCHHHHHHHHHHHhccccccccceeEEEecc
Confidence 23456799999999888533321 3457777655
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=174.62 Aligned_cols=173 Identities=17% Similarity=0.129 Sum_probs=128.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCch----hhhhhhhhcCCCCceEEEEccCCCHHHHHHHhh
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIG----AVKVLQELFPEPGRLQFIYADLGDAKAVNKFFS 142 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 142 (413)
+.+ |+++||||+|+||.++++.|+++|++|++++|+...... +.+...++...+.++.++.+|+++++++.++++
T Consensus 4 ~~~-k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 4 LSG-KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 345 899999999999999999999999999999986543221 111222222234578899999999999988876
Q ss_pred c-----CCCcEEEEcCcccCccCCc----CChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCCCCCC
Q 015080 143 E-----NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 143 ~-----~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
+ .++|+||||||...+.... ++.+..+++|+.++.++++++. +.+.+++|++||......
T Consensus 83 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~------- 155 (273)
T PRK08278 83 KAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDP------- 155 (273)
T ss_pred HHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccc-------
Confidence 5 4799999999975443322 2345578899999777766664 344578999998542211
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFN 249 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~ 249 (413)
....+..+|+.||++.+.+++.++.+ +|++++++.|+.
T Consensus 156 --~~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~ 196 (273)
T PRK08278 156 --KWFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRT 196 (273)
T ss_pred --cccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Confidence 01134678999999999999999888 489999999984
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=172.46 Aligned_cols=213 Identities=16% Similarity=0.091 Sum_probs=152.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
++|+||||+|+||++++++|+++|++|++++|+..+.. +..+++... .++.++.+|++|.+++.+++++ .+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~---~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELE---EAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHH---HHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 89999999999999999999999999999987543322 222332222 5688999999999999887764 47
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHH---cCCCEEEEeccceecCCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMAR---HGVDTLIYSSTCATYGEPEKMPITEETPQAPIN 218 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~---~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~ 218 (413)
+|+|||+||...... ..+..+..+++|+.++..+++++.+ .+.+++|++||...+.. ..+..
T Consensus 83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~-----------~~~~~ 151 (237)
T PRK07326 83 LDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTNF-----------FAGGA 151 (237)
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhccC-----------CCCCc
Confidence 999999999754332 1223445688899998777666543 34578999999765432 22356
Q ss_pred hhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccc
Q 015080 219 PYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDY 295 (413)
Q Consensus 219 ~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 295 (413)
.|+.+|++.+.+++.++.+ .|++++++||+.+.++.... .+ .
T Consensus 152 ~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~---------------------------~~-~------- 196 (237)
T PRK07326 152 AYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGH---------------------------TP-S------- 196 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCccccc---------------------------cc-c-------
Confidence 7999999999999988755 68999999999987653110 00 0
Q ss_pred cCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCc
Q 015080 296 STADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKG 338 (413)
Q Consensus 296 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~ 338 (413)
.. ....+..+|++++++.++..+.........+..+.+
T Consensus 197 ---~~--~~~~~~~~d~a~~~~~~l~~~~~~~~~~~~~~~~~~ 234 (237)
T PRK07326 197 ---EK--DAWKIQPEDIAQLVLDLLKMPPRTLPSKIEVRPSRP 234 (237)
T ss_pred ---hh--hhccCCHHHHHHHHHHHHhCCccccccceEEecCCC
Confidence 00 001378899999999999876554445555654443
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-21 Score=176.25 Aligned_cols=169 Identities=20% Similarity=0.172 Sum_probs=125.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+|+||++++++|+++|++|++++|+....++..+.++ .. .++.++.+|++|++++++++++ .+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~---~~-~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~ 76 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELK---EY-GEVYAVKADLSDKDDLKNLVKEAWELLGG 76 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---hc-CCceEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 479999999999999999999999999999875433333333332 22 3688899999999999888764 57
Q ss_pred CcEEEEcCcccCcc---CCcCC---hHHHHHHHHHH----HHHHHHHHH-HcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVG---ESTLD---PLKYYHNITSN----TLVVLESMA-RHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~---~~~~~---~~~~~~~n~~~----~~~ll~~~~-~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
+|+||||||..... ..... ....+++|+.+ +..+++.+. +.+.++||++||..++. +.
T Consensus 77 id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~-----------~~ 145 (259)
T PRK08340 77 IDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKE-----------PM 145 (259)
T ss_pred CCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCC-----------CC
Confidence 99999999975321 11112 22345667666 445566665 34567999999977643 22
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
.+...|+.+|++.+.+++.++.+ .|++++.|.||.+-.+.
T Consensus 146 ~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~ 188 (259)
T PRK08340 146 PPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPG 188 (259)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCcc
Confidence 33678999999999999999987 57999999999987663
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=173.66 Aligned_cols=173 Identities=15% Similarity=0.129 Sum_probs=131.5
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+|+||||+|+||++++++|+++|++|++++|+....+.+...+. ..+.++.++.+|+++.+++.+++++
T Consensus 7 ~~~-k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (258)
T PRK06949 7 LEG-KVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIE---AEGGAAHVVSLDVTDYQSIKAAVAHAET 82 (258)
T ss_pred CCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 445 899999999999999999999999999999875433232322222 2235688999999999999888764
Q ss_pred --CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHH----HcC--------CCEEEEeccceecCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMA----RHG--------VDTLIYSSTCATYGEPEK 205 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~----~~~--------~~~iV~~SS~~~~~~~~~ 205 (413)
.++|+||||||....... .++.+..+++|+.++..+++++. +.. .+++|++||...+..
T Consensus 83 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~--- 159 (258)
T PRK06949 83 EAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRV--- 159 (258)
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCC---
Confidence 479999999997543322 23345578889988776665543 332 369999999776532
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 206 MPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 206 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
..+..+|+.+|++.+.+++.++.+ .|+++++++||.|+++.
T Consensus 160 --------~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~ 203 (258)
T PRK06949 160 --------LPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEI 203 (258)
T ss_pred --------CCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCc
Confidence 223678999999999999998877 58999999999999875
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=174.32 Aligned_cols=225 Identities=17% Similarity=0.102 Sum_probs=149.1
Q ss_pred CCCceEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG--~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+ |+++||||++ +||.++++.|+++|++|++.+|+. ..++..+.+.+.. ....++++|++|+++++++++.
T Consensus 6 ~~~-k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~~~---g~~~~~~~Dv~~~~~v~~~~~~~ 80 (260)
T PRK06603 6 LQG-KKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAEEI---GCNFVSELDVTNPKSISNLFDDI 80 (260)
T ss_pred cCC-cEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHHhc---CCceEEEccCCCHHHHHHHHHHH
Confidence 345 8999999997 899999999999999999887642 1122222222211 1234678999999999888765
Q ss_pred ----CCCcEEEEcCcccCc----cC----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYV----GE----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~----~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
+++|+||||||+... .. ..++....+++|+.+...+++.+... ..++||++||.....
T Consensus 81 ~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~-------- 152 (260)
T PRK06603 81 KEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK-------- 152 (260)
T ss_pred HHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc--------
Confidence 679999999997532 11 22334457888999866655543321 236999999965431
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
+......|+.||++.+.+++.++.+ +||++++|.||.+-.+.... . . .. ...........|
T Consensus 153 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~-~---~--------~~-~~~~~~~~~~~p 216 (260)
T PRK06603 153 ---VIPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSA-I---G--------DF-STMLKSHAATAP 216 (260)
T ss_pred ---CCCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhc-C---C--------Cc-HHHHHHHHhcCC
Confidence 1222568999999999999999987 68999999999987653110 0 0 00 111111111111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCC
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTG 336 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~ 336 (413)
...+...+|+|+++++++..... -.+.++.+.+|
T Consensus 217 ----------------~~r~~~pedva~~~~~L~s~~~~~itG~~i~vdgG 251 (260)
T PRK06603 217 ----------------LKRNTTQEDVGGAAVYLFSELSKGVTGEIHYVDCG 251 (260)
T ss_pred ----------------cCCCCCHHHHHHHHHHHhCcccccCcceEEEeCCc
Confidence 12357789999999999875322 24467777655
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-21 Score=197.86 Aligned_cols=241 Identities=18% Similarity=0.156 Sum_probs=157.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+....+...+.+..... ...+..+.+|++|.+++.+++++
T Consensus 412 l~g-kvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~-~~~~~~v~~Dvtd~~~v~~a~~~i~~ 489 (676)
T TIGR02632 412 LAR-RVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFG-AGRAVALKMDVTDEQAVKAAFADVAL 489 (676)
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcC-CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 446 8999999999999999999999999999998754433333333322111 13577899999999999988865
Q ss_pred --CCCcEEEEcCcccCccCCcC----ChHHHHHHHHHHHH----HHHHHHHHcC-CCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGESTL----DPLKYYHNITSNTL----VVLESMARHG-VDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~~~----~~~~~~~~n~~~~~----~ll~~~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
+++|+||||||+.......+ +....+++|+.+.. .+++.+++.+ .++||++||...+...
T Consensus 490 ~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~--------- 560 (676)
T TIGR02632 490 AYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAG--------- 560 (676)
T ss_pred hcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCC---------
Confidence 47999999999764333222 23446778888744 4556666654 4689999996543221
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeeccee-cCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVI-GSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
....+|+.||++.+.+++.++.+ .|++++.|+|+.|+ |...... .+........+.-.........
T Consensus 561 --~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~--~~~~~~~~~~~~~~~~~~~~~~------ 630 (676)
T TIGR02632 561 --KNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDG--EWREERAAAYGIPADELEEHYA------ 630 (676)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccc--cchhhhhhcccCChHHHHHHHH------
Confidence 22578999999999999999887 58999999999987 3321000 0000000000000000000000
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKG 338 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~ 338 (413)
.......+++.+|+|+++.+++... ....+.++++.+|..
T Consensus 631 ----------~r~~l~r~v~peDVA~av~~L~s~~~~~~TG~~i~vDGG~~ 671 (676)
T TIGR02632 631 ----------KRTLLKRHIFPADIAEAVFFLASSKSEKTTGCIITVDGGVP 671 (676)
T ss_pred ----------hcCCcCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCCch
Confidence 1122345689999999999887643 233457899877643
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=173.85 Aligned_cols=232 Identities=14% Similarity=0.124 Sum_probs=158.5
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCE-EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
+++ |+++||||+|+||.+++++|+++|++ |++++|...+.......+ ...+..+.++.+|+++++++.++++.
T Consensus 4 ~~~-k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l---~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (260)
T PRK06198 4 LDG-KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAEL---EALGAKAVFVQADLSDVEDCRRVVAAAD 79 (260)
T ss_pred CCC-cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHH---HhcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 345 89999999999999999999999999 999887543322222222 22245688899999999999888765
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHH----HcC-CCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMA----RHG-VDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||...... ..+.....+++|+.++.++++++. +.+ .+++|++||...++....
T Consensus 80 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~------ 153 (260)
T PRK06198 80 EAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQPF------ 153 (260)
T ss_pred HHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCCCC------
Confidence 47999999999754322 122234468899999777766554 332 468999999887654322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
...|+.+|.+.|.+++.++.+ .+++++.++||.++++.......... ..............
T Consensus 154 -----~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~--------~~~~~~~~~~~~~~--- 217 (260)
T PRK06198 154 -----LAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFH--------GAPDDWLEKAAATQ--- 217 (260)
T ss_pred -----cchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhcc--------CCChHHHHHHhccC---
Confidence 578999999999999998876 57999999999999875210000000 00011111111111
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
....+++++|++++++.++..... ..+++|.+.++.
T Consensus 218 -------------~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~~~~ 254 (260)
T PRK06198 218 -------------PFGRLLDPDEVARAVAFLLSDESGLMTGSVIDFDQSV 254 (260)
T ss_pred -------------CccCCcCHHHHHHHHHHHcChhhCCccCceEeECCcc
Confidence 123468999999999998864432 245788886543
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=173.02 Aligned_cols=173 Identities=14% Similarity=0.071 Sum_probs=130.5
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-CC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-NA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~ 145 (413)
+.+ |+++||||+|+||.++++.|+++|++|++++|+..+.+...+.+.... +.++.++.+|++|++++.++++. .+
T Consensus 5 ~~~-k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~~g~ 81 (259)
T PRK06125 5 LAG-KRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH--GVDVAVHALDLSSPEAREQLAAEAGD 81 (259)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc--CCceEEEEecCCCHHHHHHHHHHhCC
Confidence 446 899999999999999999999999999999876443333333333211 24688899999999999988876 57
Q ss_pred CcEEEEcCcccCccCC----cCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|++|||||....... .++.+..+++|+.+... +++.+.+.+.++||++||..... +...+
T Consensus 82 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~-----------~~~~~ 150 (259)
T PRK06125 82 IDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGEN-----------PDADY 150 (259)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccC-----------CCCCc
Confidence 9999999997543222 22335568889998544 55555666567999999965421 22336
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
..|+.+|++.+.+++.++.+ .|++++.++||.+..+
T Consensus 151 ~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~ 189 (259)
T PRK06125 151 ICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATD 189 (259)
T ss_pred hHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccH
Confidence 67999999999999999876 6899999999998875
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=175.40 Aligned_cols=230 Identities=13% Similarity=0.112 Sum_probs=152.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |++|||||+|+||++++++|+++|++|++++|+... ..+...+. +.++.++++|++|.+++++++++
T Consensus 4 ~~~-k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (263)
T PRK06200 4 LHG-QVALITGGGSGIGRALVERFLAEGARVAVLERSAEK---LASLRQRF---GDHVLVVEGDVTSYADNQRAVDQTVD 76 (263)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHH
Confidence 345 899999999999999999999999999999875432 22222222 24688899999999998887765
Q ss_pred --CCCcEEEEcCcccCcc-C----CcCC----hHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVG-E----STLD----PLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~-~----~~~~----~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~ 208 (413)
.++|+||||||+.... . ..+. .+..+++|+.++..+++++ ++. .+++|++||...+...
T Consensus 77 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~~~----- 150 (263)
T PRK06200 77 AFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKAS-GGSMIFTLSNSSFYPG----- 150 (263)
T ss_pred hcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhc-CCEEEEECChhhcCCC-----
Confidence 4799999999975321 1 1111 3345678988865555444 443 3689999997765322
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEeecceecCCCCCC-CCCCCCcccccccchHHHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN--SDMAVMILRYFNVIGSDPEGR-LGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~--~gi~~~~lrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
.+...|+.||++.+.+++.++.+ .++++++|.||.+..+..... .+..... . ...+.........
T Consensus 151 ------~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~- 218 (263)
T PRK06200 151 ------GGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETS-I----SDSPGLADMIAAI- 218 (263)
T ss_pred ------CCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcc-c----ccccchhHHhhcC-
Confidence 22567999999999999999887 359999999999976632110 0000000 0 0001111111111
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc-C-CCCccEEEecCC
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-Q-PKKVGIYNVGTG 336 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~-~~~~~~yni~~~ 336 (413)
+ ....+...+|+++++++++... . ...++++.+.+|
T Consensus 219 --~-------------p~~r~~~~~eva~~~~fl~s~~~~~~itG~~i~vdgG 256 (263)
T PRK06200 219 --T-------------PLQFAPQPEDHTGPYVLLASRRNSRALTGVVINADGG 256 (263)
T ss_pred --C-------------CCCCCCCHHHHhhhhhheecccccCcccceEEEEcCc
Confidence 1 1224678899999999988744 2 224567777655
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=174.65 Aligned_cols=226 Identities=13% Similarity=0.059 Sum_probs=151.9
Q ss_pred CCCceEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGas--G~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+ |++|||||+ ++||.++|++|+++|++|++++|..+..+.+.+..+++ .....+++|++|++++++++++
T Consensus 8 ~~~-k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~v~~~~~~~ 82 (272)
T PRK08159 8 MAG-KRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAEL----GAFVAGHCDVTDEASIDAVFETL 82 (272)
T ss_pred ccC-CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhc----CCceEEecCCCCHHHHHHHHHHH
Confidence 345 899999997 89999999999999999998876422112222222222 2356789999999999988765
Q ss_pred ----CCCcEEEEcCcccCc----cC----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYV----GE----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~----~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|++|||||+... .. ..++.+..+++|+.++..+++.+... +.++||++||.....
T Consensus 83 ~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~-------- 154 (272)
T PRK08159 83 EKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEK-------- 154 (272)
T ss_pred HHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEecccccc--------
Confidence 579999999997532 11 22334557889999977776665542 247999999865431
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
+.+....|+.||++.+.+++.++.+ .|+++++|.||.+..+..... + .+ ..........
T Consensus 155 ---~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~----~--------~~-~~~~~~~~~~-- 216 (272)
T PRK08159 155 ---VMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGI----G--------DF-RYILKWNEYN-- 216 (272)
T ss_pred ---CCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcC----C--------cc-hHHHHHHHhC--
Confidence 1223678999999999999999887 689999999999876421100 0 00 0011111111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
.+ ...+...+|+|+++++++.... ...+.++.+.++.
T Consensus 217 -~p-------------~~r~~~peevA~~~~~L~s~~~~~itG~~i~vdgG~ 254 (272)
T PRK08159 217 -AP-------------LRRTVTIEEVGDSALYLLSDLSRGVTGEVHHVDSGY 254 (272)
T ss_pred -Cc-------------ccccCCHHHHHHHHHHHhCccccCccceEEEECCCc
Confidence 11 1135788999999999987432 2345678776664
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=173.79 Aligned_cols=224 Identities=17% Similarity=0.147 Sum_probs=147.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcC-CCCceEEEEccCCCHHHHH----HHhhc--
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIYADLGDAKAVN----KFFSE-- 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~----~~~~~-- 143 (413)
++++||||+|+||++++++|+++|++|++++|.. .+......+++.. .+..+.++.+|++|.+++. +++++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~ 79 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRS--AAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACF 79 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCc--HHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHH
Confidence 5899999999999999999999999999876432 1222222222211 1245778999999997553 33322
Q ss_pred ---CCCcEEEEcCcccCccCCcC---------------ChHHHHHHHHHHHHHHHHHHH----Hc------CCCEEEEec
Q 015080 144 ---NAFDAVMHFAAVAYVGESTL---------------DPLKYYHNITSNTLVVLESMA----RH------GVDTLIYSS 195 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~~~---------------~~~~~~~~n~~~~~~ll~~~~----~~------~~~~iV~~S 195 (413)
.++|+||||||...+....+ .....+++|+.++..+++++. .. ..+++|++|
T Consensus 80 ~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~ 159 (267)
T TIGR02685 80 RAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLC 159 (267)
T ss_pred HccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEeh
Confidence 57999999999754322111 134568899998666665543 22 124788888
Q ss_pred cceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccc
Q 015080 196 TCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGR 272 (413)
Q Consensus 196 S~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~ 272 (413)
|..... +..+..+|+.||++.+.+++.++.+ .|+++++|+||.+..|..
T Consensus 160 s~~~~~-----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~----------------- 211 (267)
T TIGR02685 160 DAMTDQ-----------PLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDA----------------- 211 (267)
T ss_pred hhhccC-----------CCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccc-----------------
Confidence 855431 2334678999999999999999887 689999999999876531
Q ss_pred hHHHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCcc
Q 015080 273 ISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGR 339 (413)
Q Consensus 273 ~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~ 339 (413)
+............+ . + ..+...+|++++++.++..... ..+..+.+.++..+
T Consensus 212 ~~~~~~~~~~~~~~---~---------~---~~~~~~~~va~~~~~l~~~~~~~~~G~~~~v~gg~~~ 264 (267)
T TIGR02685 212 MPFEVQEDYRRKVP---L---------G---QREASAEQIADVVIFLVSPKAKYITGTCIKVDGGLSL 264 (267)
T ss_pred cchhHHHHHHHhCC---C---------C---cCCCCHHHHHHHHHHHhCcccCCcccceEEECCceec
Confidence 11111111111111 0 0 1246889999999998875422 24467777665443
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=172.90 Aligned_cols=224 Identities=13% Similarity=0.088 Sum_probs=149.0
Q ss_pred CCceEEEEEcC--CChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 68 EGVTHVLVTGG--AGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 68 ~~~k~vlITGa--sG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+ |++||||| +++||.+++++|+++|++|++++|..+..+.+.+...+. ....++.+|++|+++++++++.
T Consensus 5 ~~-k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~ 79 (260)
T PRK06997 5 AG-KRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF----GSDLVFPCDVASDEQIDALFASLG 79 (260)
T ss_pred CC-cEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhc----CCcceeeccCCCHHHHHHHHHHHH
Confidence 45 89999996 689999999999999999998876433333332222222 2234688999999999988865
Q ss_pred ---CCCcEEEEcCcccCcc----C-----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVG----E-----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~----~-----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|++|||||+.... . ..++.+..+++|+.++..+++++... +.++||++||....-
T Consensus 80 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~-------- 151 (260)
T PRK06997 80 QHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER-------- 151 (260)
T ss_pred HHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEecccccc--------
Confidence 6799999999975321 1 11233456889999865554444332 236899999965431
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
+.....+|+.||++.+.+++.++.+ +|++++.|.||.|-.+.... . . . ............+
T Consensus 152 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~-~---~--------~-~~~~~~~~~~~~p 215 (260)
T PRK06997 152 ---VVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASG-I---K--------D-FGKILDFVESNAP 215 (260)
T ss_pred ---CCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhcc-c---c--------c-hhhHHHHHHhcCc
Confidence 1223567999999999999999887 68999999999987642110 0 0 0 0111111111111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
...+...+|+++++.+++.... ...++++.+.++
T Consensus 216 ----------------~~r~~~pedva~~~~~l~s~~~~~itG~~i~vdgg 250 (260)
T PRK06997 216 ----------------LRRNVTIEEVGNVAAFLLSDLASGVTGEITHVDSG 250 (260)
T ss_pred ----------------ccccCCHHHHHHHHHHHhCccccCcceeEEEEcCC
Confidence 1235788999999999987532 234567777554
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-20 Score=171.01 Aligned_cols=226 Identities=14% Similarity=0.112 Sum_probs=149.2
Q ss_pred CCCceEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG--~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+++ |+++||||++ +||+++++.|+++|++|++.+|+. ...+..+.+. .....+.++.+|++|+++++++++.
T Consensus 4 l~~-k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~v~~~~~~~ 78 (262)
T PRK07984 4 LSG-KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFA---AQLGSDIVLPCDVAEDASIDAMFAEL 78 (262)
T ss_pred cCC-CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHH---hccCCceEeecCCCCHHHHHHHHHHH
Confidence 345 8999999985 999999999999999999888652 2122222222 2223467889999999999988765
Q ss_pred ----CCCcEEEEcCcccCccC---------CcCChHHHHHHHHHHHHHHHHHHHH--cCCCEEEEeccceecCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGE---------STLDPLKYYHNITSNTLVVLESMAR--HGVDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~---------~~~~~~~~~~~n~~~~~~ll~~~~~--~~~~~iV~~SS~~~~~~~~~~~~ 208 (413)
.++|++|||||+..... ..+..+..+++|+.+...+.+++.. .+.++||++||.....
T Consensus 79 ~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~------- 151 (262)
T PRK07984 79 GKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER------- 151 (262)
T ss_pred HhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC-------
Confidence 56999999999753211 1122334677898885554444322 1236899999965431
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
+......|+.||++.+.+++.++.+ .||++++|.||.|-.+.... .+ .+ ...........
T Consensus 152 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~----~~--------~~-~~~~~~~~~~~ 214 (262)
T PRK07984 152 ----AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASG----IK--------DF-RKMLAHCEAVT 214 (262)
T ss_pred ----CCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhc----CC--------ch-HHHHHHHHHcC
Confidence 1223568999999999999999987 68999999999987642100 00 00 11111111111
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCC
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGK 337 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~ 337 (413)
+ ...+...+|+++++++++... ....+.++.+.++.
T Consensus 215 p----------------~~r~~~pedva~~~~~L~s~~~~~itG~~i~vdgg~ 251 (262)
T PRK07984 215 P----------------IRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGF 251 (262)
T ss_pred C----------------CcCCCCHHHHHHHHHHHcCcccccccCcEEEECCCc
Confidence 1 124578899999999988743 22344677775553
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-20 Score=169.20 Aligned_cols=172 Identities=17% Similarity=0.191 Sum_probs=124.8
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
||+||||||+|+||+++++.|+++|++|+++.+. +.+...+...++...+.++.++.||++|.+++.+++++ .
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYAR--DAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFG 79 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 3799999999999999999999999999876532 22222222222222235788999999999999887754 4
Q ss_pred CCcEEEEcCcccCccC-----CcCChHHHHHHHHHHHHHHHHHHH----HcC---CCEEEEeccceec-CCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGE-----STLDPLKYYHNITSNTLVVLESMA----RHG---VDTLIYSSTCATY-GEPEKMPITEE 211 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~----~~~---~~~iV~~SS~~~~-~~~~~~~~~e~ 211 (413)
++|+||||||...... ..++.+..+++|+.++..++..+. ..+ .++||++||.+.+ +...
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~------- 152 (248)
T PRK06947 80 RLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPN------- 152 (248)
T ss_pred CCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCCC-------
Confidence 7999999999754321 122334568899999766654433 222 3579999996543 3211
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
...+|+.||++.+.+++.++.+ .|+++++++||.+..|.
T Consensus 153 ----~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~ 194 (248)
T PRK06947 153 ----EYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEI 194 (248)
T ss_pred ----CCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCccccc
Confidence 1357999999999999999887 48999999999998874
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-20 Score=166.83 Aligned_cols=220 Identities=15% Similarity=0.151 Sum_probs=151.5
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-CC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-NA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~ 145 (413)
+++ |+||||||+|+||++++++|+++|++|+++++.. .+...+...+ .++.++.+|++|.+++.+++++ .+
T Consensus 4 ~~~-k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (237)
T PRK12742 4 FTG-KKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGS--KDAAERLAQE-----TGATAVQTDSADRDAVIDVVRKSGA 75 (237)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCC--HHHHHHHHHH-----hCCeEEecCCCCHHHHHHHHHHhCC
Confidence 345 8999999999999999999999999998875422 2222222222 2356788999999999888865 46
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCCCCCCh
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQAPINP 219 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~ 219 (413)
+|+||||||...... ..++.+..+++|+.++..++..+... ..+++|++||.... ..+..+..+
T Consensus 76 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~----------~~~~~~~~~ 145 (237)
T PRK12742 76 LDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGD----------RMPVAGMAA 145 (237)
T ss_pred CcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccc----------cCCCCCCcc
Confidence 999999999754322 22345668889999987776555443 34699999996532 113344678
Q ss_pred hHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccccc
Q 015080 220 YGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYS 296 (413)
Q Consensus 220 Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 296 (413)
|+.+|++.+.+++.++.+ .|+++++|+||.+..+.... ..+ .........+
T Consensus 146 Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~---------------~~~-~~~~~~~~~~---------- 199 (237)
T PRK12742 146 YAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPA---------------NGP-MKDMMHSFMA---------- 199 (237)
T ss_pred hHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCcccc---------------ccH-HHHHHHhcCC----------
Confidence 999999999999998876 58999999999997753210 001 1111111111
Q ss_pred CCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCC
Q 015080 297 TADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTG 336 (413)
Q Consensus 297 ~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~ 336 (413)
...+...+|+++++.+++..... -.+.++.+.++
T Consensus 200 ------~~~~~~p~~~a~~~~~l~s~~~~~~~G~~~~~dgg 234 (237)
T PRK12742 200 ------IKRHGRPEEVAGMVAWLAGPEASFVTGAMHTIDGA 234 (237)
T ss_pred ------CCCCCCHHHHHHHHHHHcCcccCcccCCEEEeCCC
Confidence 11356889999999998875332 24467777544
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=171.63 Aligned_cols=226 Identities=15% Similarity=0.063 Sum_probs=150.5
Q ss_pred CCCceEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGas--G~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+ |+++||||+ ++||.+++++|++.|++|++.++..+. ....+.++++......+.++.+|++|++++++++++
T Consensus 4 l~~-k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 4 LTG-KKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEK-GRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred cCC-cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCccc-chHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHH
Confidence 345 899999986 899999999999999999888764321 122222333322223567889999999999887765
Q ss_pred ----CCCcEEEEcCcccCc----cC----CcCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYV----GE----STLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMP 207 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~----~~----~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~ 207 (413)
.++|+||||||+... .. ..++.+..+++|+.++.. +++.+++ .++||++||.....
T Consensus 82 ~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~--~g~Iv~isS~~~~~------ 153 (258)
T PRK07370 82 KQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSE--GGSIVTLTYLGGVR------ 153 (258)
T ss_pred HHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhh--CCeEEEEecccccc------
Confidence 579999999997531 11 122334567789988555 4455543 36999999965432
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcc
Q 015080 208 ITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGI 284 (413)
Q Consensus 208 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (413)
+......|+.||++.+.+++.++.+ .|+++++|.||.|-.+..... . .. +.........
T Consensus 154 -----~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~----~--------~~-~~~~~~~~~~ 215 (258)
T PRK07370 154 -----AIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAV----G--------GI-LDMIHHVEEK 215 (258)
T ss_pred -----CCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhcc----c--------cc-hhhhhhhhhc
Confidence 2223678999999999999999987 589999999999976531100 0 00 0111111111
Q ss_pred ccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 285 IAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 285 ~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
. ....+...+|+++++.+++.... .-.++++.+.++
T Consensus 216 ~----------------p~~r~~~~~dva~~~~fl~s~~~~~~tG~~i~vdgg 252 (258)
T PRK07370 216 A----------------PLRRTVTQTEVGNTAAFLLSDLASGITGQTIYVDAG 252 (258)
T ss_pred C----------------CcCcCCCHHHHHHHHHHHhChhhccccCcEEEECCc
Confidence 1 11246678999999999887432 223467777554
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=176.84 Aligned_cols=179 Identities=15% Similarity=0.110 Sum_probs=129.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC-CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
|+++||||+++||.+++++|+++| ++|++++|+....+++. .++...+..+.++.+|++|.+++++++++ .
T Consensus 4 k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~---~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 80 (314)
T TIGR01289 4 PTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAA---KSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGR 80 (314)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH---HHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999 99999987543333222 22222234678899999999999887765 4
Q ss_pred CCcEEEEcCcccCccC-----CcCChHHHHHHHHHHH----HHHHHHHHHcC--CCEEEEeccceecCCCCC--------
Q 015080 145 AFDAVMHFAAVAYVGE-----STLDPLKYYHNITSNT----LVVLESMARHG--VDTLIYSSTCATYGEPEK-------- 205 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~-----~~~~~~~~~~~n~~~~----~~ll~~~~~~~--~~~iV~~SS~~~~~~~~~-------- 205 (413)
++|++|||||+..+.. ..+..+..+++|+.++ +.+++.+++.+ .++||++||...+.....
T Consensus 81 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~ 160 (314)
T TIGR01289 81 PLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKAN 160 (314)
T ss_pred CCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCccc
Confidence 7999999999753211 2233455788999994 44566676653 479999999876532100
Q ss_pred -C-------------CCCCCCCCCCCChhHHHHHHHHHHHHHHHhh----CCCcEEEEeecceec
Q 015080 206 -M-------------PITEETPQAPINPYGKAKKMAEDIILDFSKN----SDMAVMILRYFNVIG 252 (413)
Q Consensus 206 -~-------------~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~G 252 (413)
. +..+..+..+..+|+.||++...+++.++++ .|+.+++++||.|..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~ 225 (314)
T TIGR01289 161 LGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIAD 225 (314)
T ss_pred ccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccC
Confidence 0 0011223345678999999999988888765 479999999999863
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-20 Score=169.90 Aligned_cols=169 Identities=15% Similarity=0.148 Sum_probs=125.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+++||||+++||.+++++|+ +|++|++++|+..+.+++.+.+++.. +..+.++.+|++|++++++++++ ++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 77 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRG--ATSVHVLSFDAQDLDTHRELVKQTQELAGE 77 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcc--CCceEEEEcccCCHHHHHHHHHHHHHhcCC
Confidence 579999999999999999999 59999999876544444444443321 13478899999999999887765 57
Q ss_pred CcEEEEcCcccCccCC-c---CChHHHHHHHHHHH----HHHHHHHHHcC-CCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGES-T---LDPLKYYHNITSNT----LVVLESMARHG-VDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~-~---~~~~~~~~~n~~~~----~~ll~~~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
+|++|||||+...... . +.....+++|+.+. ..+++.+.+.+ .++||++||...+-. ...
T Consensus 78 id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~-----------~~~ 146 (246)
T PRK05599 78 ISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRA-----------RRA 146 (246)
T ss_pred CCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccC-----------CcC
Confidence 9999999998543221 1 11223456677764 35567776653 579999999765421 123
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
...|+.||++.+.+++.++.+ .|++++++.||.|..+
T Consensus 147 ~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~ 186 (246)
T PRK05599 147 NYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGS 186 (246)
T ss_pred CcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccch
Confidence 568999999999999999887 6899999999998764
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=170.29 Aligned_cols=238 Identities=16% Similarity=0.061 Sum_probs=164.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+.+||.++|++|++.|++|++++|..+..++....+......+..+..+.||+++.++++++++.
T Consensus 5 ~l~g-kvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 5 RLAG-KVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred cCCC-cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 3556 9999999999999999999999999999999877766666666555444456799999999999887766644
Q ss_pred ----CCCcEEEEcCcccCccC-----CcCChHHHHHHHHHH-----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGE-----STLDPLKYYHNITSN-----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~-----~~~~~~~~~~~n~~~-----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
+++|++|||||...... +.+.++..+++|+.| ++.+.+.+++.+.+.|+++||...+.....
T Consensus 84 ~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~~---- 159 (270)
T KOG0725|consen 84 EKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPG---- 159 (270)
T ss_pred HHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCC----
Confidence 67999999999865432 334455578889996 333444445556789999999765532111
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
. ...|+.||.+.+++++.++.| +|+++.+|-||.|..+..... ... .....+..... .+.
T Consensus 160 -----~-~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~--~~~--------~~~~~~~~~~~-~~~ 222 (270)
T KOG0725|consen 160 -----S-GVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAG--LDD--------GEMEEFKEATD-SKG 222 (270)
T ss_pred -----C-cccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccc--ccc--------chhhHHhhhhc-ccc
Confidence 1 268999999999999999988 799999999999998751100 000 00111222100 111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCc
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKG 338 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~ 338 (413)
.++ .-.+...+|+++++.+++..+.. -.++.+.+.++..
T Consensus 223 ~~p-------------~gr~g~~~eva~~~~fla~~~asyitG~~i~vdgG~~ 262 (270)
T KOG0725|consen 223 AVP-------------LGRVGTPEEVAEAAAFLASDDASYITGQTIIVDGGFT 262 (270)
T ss_pred ccc-------------cCCccCHHHHHHhHHhhcCcccccccCCEEEEeCCEE
Confidence 011 22467889999999998886433 2335666655543
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-20 Score=188.70 Aligned_cols=224 Identities=21% Similarity=0.189 Sum_probs=156.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
..+ |++|||||+|+||.+++++|+++|++|++++|+..+. .+...+. +..+..+.+|++|++++.++++.
T Consensus 267 ~~~-k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 339 (520)
T PRK06484 267 ESP-RVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGA---KKLAEAL---GDEHLSVQADITDEAAVESAFAQIQA 339 (520)
T ss_pred cCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHh---CCceeEEEccCCCHHHHHHHHHHHHH
Confidence 456 8999999999999999999999999999998753322 2222222 24577889999999999888765
Q ss_pred --CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||+... .. ..++.+..+++|+.++.++++++... +.++||++||.+.+.. .
T Consensus 340 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----------~ 408 (520)
T PRK06484 340 RWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLA-----------L 408 (520)
T ss_pred HcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCC-----------C
Confidence 579999999997532 11 22334567889999977776665543 3479999999776532 2
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
.+...|+.+|++.+.+++.++.+ .|+++++|+||.|.++...... ..............+
T Consensus 409 ~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~------------~~~~~~~~~~~~~~~----- 471 (520)
T PRK06484 409 PPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALK------------ASGRADFDSIRRRIP----- 471 (520)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhc------------cccHHHHHHHHhcCC-----
Confidence 23678999999999999999887 5899999999999876421100 000001111111111
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
...+..++|+|+++++++.... ...++++.+.++
T Consensus 472 -----------~~~~~~~~dia~~~~~l~s~~~~~~~G~~i~vdgg 506 (520)
T PRK06484 472 -----------LGRLGDPEEVAEAIAFLASPAASYVNGATLTVDGG 506 (520)
T ss_pred -----------CCCCcCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 1135688999999999887432 234578888655
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.3e-20 Score=168.26 Aligned_cols=225 Identities=15% Similarity=0.077 Sum_probs=148.0
Q ss_pred CCCceEEEEEcC--CChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGG--AGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGa--sG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+ |+++|||| +++||.+++++|+++|++|++++|+. . .+..+.+.+.. +..+.++.+|++|++++++++++
T Consensus 5 ~~~-k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~-~-~~~~~~~~~~~--~~~~~~~~~Dv~~~~~i~~~~~~~ 79 (256)
T PRK07889 5 LEG-KRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR-A-LRLTERIAKRL--PEPAPVLELDVTNEEHLASLADRV 79 (256)
T ss_pred ccC-CEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc-c-hhHHHHHHHhc--CCCCcEEeCCCCCHHHHHHHHHHH
Confidence 445 89999999 89999999999999999999988642 1 12222222211 23577899999999999888765
Q ss_pred ----CCCcEEEEcCcccCcc-----CCc---CChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVG-----EST---LDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~-----~~~---~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|++|||||+.... ... ++....+++|+.++..++..+... ..++||++|+....
T Consensus 80 ~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~--------- 150 (256)
T PRK07889 80 REHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATV--------- 150 (256)
T ss_pred HHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccc---------
Confidence 5799999999975321 111 223446889999855544443321 23689998864321
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
+...+..|+.||++.+.+++.++.+ +|++++.|.||.+-.+..... + . ............+
T Consensus 151 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~----~--------~-~~~~~~~~~~~~p 214 (256)
T PRK07889 151 ---AWPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAI----P--------G-FELLEEGWDERAP 214 (256)
T ss_pred ---cCCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcc----c--------C-cHHHHHHHHhcCc
Confidence 1123567999999999999999887 689999999999876531100 0 0 0011111111111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
+ .+.+...+|+|+++++++.... ...+.++.+.++
T Consensus 215 ---~------------~~~~~~p~evA~~v~~l~s~~~~~~tG~~i~vdgg 250 (256)
T PRK07889 215 ---L------------GWDVKDPTPVARAVVALLSDWFPATTGEIVHVDGG 250 (256)
T ss_pred ---c------------ccccCCHHHHHHHHHHHhCcccccccceEEEEcCc
Confidence 0 0135788999999999887532 224467777554
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=173.37 Aligned_cols=232 Identities=15% Similarity=0.089 Sum_probs=153.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----CCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----NAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~~~ 146 (413)
|+++|||| |+||++++++|+ +|++|++++|+..+.++..+.++ ..+.++.++.+|++|++++.++++. .++
T Consensus 3 k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 3 EVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLR---EAGFDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred CEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 78999997 799999999996 89999999875443333333332 2234688899999999999888764 579
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCC--------CCCCCC----C
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEK--------MPITEE----T 212 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~--------~~~~e~----~ 212 (413)
|+||||||+.. ...+.+..+++|+.++.++++++... ..+++|++||.+....... ..++.. .
T Consensus 78 d~li~nAG~~~---~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (275)
T PRK06940 78 TGLVHTAGVSP---SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSL 154 (275)
T ss_pred CEEEECCCcCC---chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcccccccccccccc
Confidence 99999999753 23457788999999988877776543 2256788888654321100 000000 0
Q ss_pred C-------CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHh
Q 015080 213 P-------QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAAR 282 (413)
Q Consensus 213 ~-------~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (413)
+ ..+...|+.||++.+.+++.++.+ .|+++++|.||.+..+.....+ .. . .........
T Consensus 155 ~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~---~~-------~-~~~~~~~~~ 223 (275)
T PRK06940 155 PFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDEL---NG-------P-RGDGYRNMF 223 (275)
T ss_pred ccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhh---cC-------C-chHHHHHHh
Confidence 0 023568999999999999988877 5899999999999876321000 00 0 000111111
Q ss_pred ccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCC
Q 015080 283 GIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGK 337 (413)
Q Consensus 283 ~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~ 337 (413)
...+ ...+...+|+|+++.+++... ....++++.+.++.
T Consensus 224 ~~~p----------------~~r~~~peeia~~~~fL~s~~~~~itG~~i~vdgg~ 263 (275)
T PRK06940 224 AKSP----------------AGRPGTPDEIAALAEFLMGPRGSFITGSDFLVDGGA 263 (275)
T ss_pred hhCC----------------cccCCCHHHHHHHHHHHcCcccCcccCceEEEcCCe
Confidence 1111 123678899999999988642 22344677776553
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-20 Score=170.62 Aligned_cols=171 Identities=19% Similarity=0.143 Sum_probs=127.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+++||||+|+||.+++++|+++|++|++++|+....++..+.+.... ...+.++.+|++|++++.+++++ .+
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALG--GTVPEHRALDISDYDAVAAFAADIHAAHGS 78 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 479999999999999999999999999998875433332333332221 12355678999999998877765 46
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHH----Hc-CCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMA----RH-GVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~-~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
+|+||||||...... ..++.+..+++|+.++..+++++. +. ..++||++||...+... ..
T Consensus 79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~-----------~~ 147 (272)
T PRK07832 79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVAL-----------PW 147 (272)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCC-----------CC
Confidence 999999999754322 223345678899999777777653 32 34799999997644221 22
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
..+|+.+|++.+.+.+.++.+ +|+++++++||.+.++.
T Consensus 148 ~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~ 188 (272)
T PRK07832 148 HAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPL 188 (272)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcc
Confidence 567999999999999888765 68999999999999874
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-20 Score=170.02 Aligned_cols=170 Identities=15% Similarity=0.151 Sum_probs=128.3
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
.+ +++|||||+|+||.+++++|+++|++|++++|+...... ...++ ..+.++.++.+|++|.+++.++++.
T Consensus 4 ~~-~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~---~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 78 (263)
T PRK09072 4 KD-KRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEA---LAARL-PYPGRHRWVVADLTSEAGREAVLARAREM 78 (263)
T ss_pred CC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHH---HHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHhc
Confidence 45 899999999999999999999999999999875433222 22222 2245789999999999998877653
Q ss_pred CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 144 NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
.++|+||||||....... .++....+++|+.++.++++.+. +.+.+++|++||...+... .
T Consensus 79 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~-----------~ 147 (263)
T PRK09072 79 GGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGY-----------P 147 (263)
T ss_pred CCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCC-----------C
Confidence 578999999997543322 22334578899999777666654 4455789999996543221 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
....|+.+|++.+.+++.++.+ .|++++++.||.+.++
T Consensus 148 ~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~ 188 (263)
T PRK09072 148 GYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTA 188 (263)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccc
Confidence 2567999999999999998876 5799999999988664
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=173.15 Aligned_cols=161 Identities=17% Similarity=0.190 Sum_probs=126.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||.++++.|+++|++|+++++...... ...+.++.+|++|+++++++++.
T Consensus 7 l~~-k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~------------~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (266)
T PRK06171 7 LQG-KIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ------------HENYQFVPTDVSSAEEVNHTVAEIIE 73 (266)
T ss_pred CCC-CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc------------cCceEEEEccCCCHHHHHHHHHHHHH
Confidence 446 89999999999999999999999999999987544321 13678899999999999887765
Q ss_pred --CCCcEEEEcCcccCccC-------------CcCChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE-------------STLDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPE 204 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~-------------~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~ 204 (413)
.++|+||||||...... ..++.+..+++|+.++..+++++. +.+.++||++||...+...
T Consensus 74 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~- 152 (266)
T PRK06171 74 KFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGS- 152 (266)
T ss_pred HcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCCC-
Confidence 57999999999753211 122334578899999777665554 4456799999997765322
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeeccee
Q 015080 205 KMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVI 251 (413)
Q Consensus 205 ~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~ 251 (413)
....+|+.+|++.+.+++.++.+ .|+++++|+||.+-
T Consensus 153 ----------~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~ 192 (266)
T PRK06171 153 ----------EGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILE 192 (266)
T ss_pred ----------CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccc
Confidence 22578999999999999999887 58999999999874
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=166.10 Aligned_cols=169 Identities=18% Similarity=0.124 Sum_probs=127.5
Q ss_pred EEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CCCc
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NAFD 147 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~~d 147 (413)
||||||+|+||.+++++|+++|++|+++++... +.......++...+.++.++.+|++|.+++.+++++ .++|
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~ 78 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGR--SDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYY 78 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 689999999999999999999999998876432 222222222222245789999999999998887754 5689
Q ss_pred EEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH-----HHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCC
Q 015080 148 AVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM-----ARHGVDTLIYSSTCATYGEPEKMPITEETPQAPIN 218 (413)
Q Consensus 148 vvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~-----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~ 218 (413)
++|||||+..... ..++++..+++|+.++.++++++ ++.+.++||++||...+... .+..
T Consensus 79 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~-----------~~~~ 147 (239)
T TIGR01831 79 GVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGN-----------RGQV 147 (239)
T ss_pred EEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCC-----------CCCc
Confidence 9999999754322 23445667889999988877654 33456799999996543221 2256
Q ss_pred hhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 219 PYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 219 ~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
.|+.+|++.+.+++.++.+ .|++++.++||.+.++.
T Consensus 148 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 186 (239)
T TIGR01831 148 NYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEM 186 (239)
T ss_pred chHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCcccc
Confidence 8999999999999988877 58999999999998764
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.9e-20 Score=188.43 Aligned_cols=173 Identities=17% Similarity=0.143 Sum_probs=134.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
..+ +++|||||+|+||++++++|+++|++|++++|+....+++.+.++. .+.++.++.+|++|++++.+++++
T Consensus 313 ~~~-~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 388 (582)
T PRK05855 313 FSG-KLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRA---AGAVAHAYRVDVSDADAMEAFAEWVRA 388 (582)
T ss_pred CCC-CEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 344 8999999999999999999999999999998765443433333332 245788999999999999888765
Q ss_pred --CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHH----HHHHHcC-CCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVL----ESMARHG-VDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll----~~~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+...... .++....+++|+.|+.+++ +.+.+.+ .++||++||.+.|....
T Consensus 389 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~-------- 460 (582)
T PRK05855 389 EHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSR-------- 460 (582)
T ss_pred hcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCCC--------
Confidence 469999999998654332 2334457889999866654 4455554 47999999988875433
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
+...|+.||++.+.+++.++.+ .|+++++|+||.|-.+.
T Consensus 461 ---~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~ 502 (582)
T PRK05855 461 ---SLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTNI 502 (582)
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcccc
Confidence 3678999999999999998877 68999999999987653
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-20 Score=192.86 Aligned_cols=174 Identities=15% Similarity=0.112 Sum_probs=135.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+++ |+++||||+|+||.+++++|+++|++|++++|+....+++.+.+.. .+.++.++.+|++|.+++++++++
T Consensus 368 ~~~~-k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~ 443 (657)
T PRK07201 368 PLVG-KVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRA---KGGTAHAYTCDLTDSAAVDHTVKDIL 443 (657)
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3456 8999999999999999999999999999998754433333333322 235789999999999999888764
Q ss_pred ---CCCcEEEEcCcccCccCC------cCChHHHHHHHHHHHHHH----HHHHHHcCCCEEEEeccceecCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES------TLDPLKYYHNITSNTLVV----LESMARHGVDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~------~~~~~~~~~~n~~~~~~l----l~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
.++|+||||||....... .++.+..+++|+.++.++ ++.+++.+.++||++||.+++....
T Consensus 444 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~------ 517 (657)
T PRK07201 444 AEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNAP------ 517 (657)
T ss_pred HhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCC------
Confidence 479999999997532211 123556788999996554 5566667778999999988775332
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
....|+.||++.+.+++.++.+ .|+++++|+||.|..+.
T Consensus 518 -----~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~ 559 (657)
T PRK07201 518 -----RFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPM 559 (657)
T ss_pred -----CcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccc
Confidence 2578999999999999998877 58999999999998763
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=166.96 Aligned_cols=173 Identities=14% Similarity=0.133 Sum_probs=125.8
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCC--CHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG--DAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d~~~~~~~~~~- 143 (413)
+.+ |+||||||+|+||.+++++|++.|++|++++|+....+...+.+++.. ..++.++.+|++ +.+++.++++.
T Consensus 10 ~~~-k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 10 LKD-RIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG--GPQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEecccCCCHHHHHHHHHHH
Confidence 345 899999999999999999999999999999876433333333333221 235778888886 66666555433
Q ss_pred ----CCCcEEEEcCcccCcc-----CCcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVG-----ESTLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
.++|+||||||..... ...+..+..+++|+.++.+++++ +.+.+.++||++||.......
T Consensus 87 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~~------- 159 (247)
T PRK08945 87 EEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQGR------- 159 (247)
T ss_pred HHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCCC-------
Confidence 5799999999975331 12233456788999996655554 456677899999996544221
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
....+|+.||++.+.+++.++.+ .|+++++++|+.+.++
T Consensus 160 ----~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~ 201 (247)
T PRK08945 160 ----ANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTA 201 (247)
T ss_pred ----CCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCc
Confidence 22568999999999999998877 4799999999988765
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-20 Score=172.34 Aligned_cols=177 Identities=12% Similarity=0.062 Sum_probs=127.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC-------CchhhhhhhhhcCCCCceEEEEccCCCHHHHHH
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG-------NIGAVKVLQELFPEPGRLQFIYADLGDAKAVNK 139 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 139 (413)
+.+ |+++||||+++||.++|++|++.|++|++++|+... .+...+....+...+..+.++++|++|++++++
T Consensus 6 l~~-k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 6 LRG-KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 456 999999999999999999999999999999886432 122222222222223467889999999999998
Q ss_pred Hhhc-----CCCcEEEEcC-cccCc----cCC----cCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEecccee-c
Q 015080 140 FFSE-----NAFDAVMHFA-AVAYV----GES----TLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCAT-Y 200 (413)
Q Consensus 140 ~~~~-----~~~dvvi~~A-g~~~~----~~~----~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~-~ 200 (413)
++++ .++|++|||| |.... ... .++....+++|+.+ ++.+++.+.+.+.++||++||... +
T Consensus 85 ~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~ 164 (305)
T PRK08303 85 LVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEY 164 (305)
T ss_pred HHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCccccc
Confidence 8765 5799999999 74211 111 12233456778877 455666666655679999999543 2
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 201 GEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 201 ~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
... +......|+.||++...+++.++.+ .||++++|.||.|-.+
T Consensus 165 ~~~---------~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~ 211 (305)
T PRK08303 165 NAT---------HYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSE 211 (305)
T ss_pred cCc---------CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccH
Confidence 110 1112457999999999999999887 5899999999988654
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=171.75 Aligned_cols=168 Identities=15% Similarity=0.102 Sum_probs=123.1
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcC-----
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSEN----- 144 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 144 (413)
||++|||||+|+||++++++|+++|++|++++|... +...+...+ .+.+++++.+|++|.+++.+++++.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~--~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 75 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGTHVISISRTEN--KELTKLAEQ---YNSNLTFHSLDLQDVHELETNFNEILSSIQ 75 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCch--HHHHHHHhc---cCCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999987542 112221111 1357889999999999998877541
Q ss_pred --C--CcEEEEcCcccCccC-----CcCChHHHHHHHHHH----HHHHHHHHHHc-CCCEEEEeccceecCCCCCCCCCC
Q 015080 145 --A--FDAVMHFAAVAYVGE-----STLDPLKYYHNITSN----TLVVLESMARH-GVDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 145 --~--~dvvi~~Ag~~~~~~-----~~~~~~~~~~~n~~~----~~~ll~~~~~~-~~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
+ .+++|||||...+.. ..+.....+++|+.+ ++++++.+++. +.++||++||..++.
T Consensus 76 ~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~--------- 146 (251)
T PRK06924 76 EDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKN--------- 146 (251)
T ss_pred cccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcC---------
Confidence 1 228999999754311 222334456778877 55566666654 356899999976542
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh-----CCCcEEEEeecceecC
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN-----SDMAVMILRYFNVIGS 253 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~lrp~~v~G~ 253 (413)
+..+..+|+.+|++.+.+++.++.+ .+++++.|+||.+-.+
T Consensus 147 --~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~ 192 (251)
T PRK06924 147 --PYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTN 192 (251)
T ss_pred --CCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccH
Confidence 3344678999999999999988766 4799999999988754
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=165.49 Aligned_cols=174 Identities=15% Similarity=0.141 Sum_probs=124.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC--HHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD--AKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~- 143 (413)
+.+ |+++||||+|+||.+++++|+++|++|++++|+....+...+.+.+.. ...+.++.+|+++ .+++.++++.
T Consensus 4 l~~-k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~i 80 (239)
T PRK08703 4 LSD-KTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG--HPEPFAIRFDLMSAEEKEFEQFAATI 80 (239)
T ss_pred CCC-CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC--CCCcceEEeeecccchHHHHHHHHHH
Confidence 345 899999999999999999999999999999886544333333332211 1356788899976 3455544321
Q ss_pred -----CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCC
Q 015080 144 -----NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|+||||||.... .. ..++....+++|+.++.++++++ .+.+.+++|++||.....
T Consensus 81 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~-------- 152 (239)
T PRK08703 81 AEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGET-------- 152 (239)
T ss_pred HHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEecccccc--------
Confidence 468999999997432 11 12233447889999966655544 445567999999955321
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhC----CCcEEEEeecceecCC
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKNS----DMAVMILRYFNVIGSD 254 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~~lrp~~v~G~~ 254 (413)
+......|+.||++.+.+++.++.+. ++++++|+||.|.+|.
T Consensus 153 ---~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~ 198 (239)
T PRK08703 153 ---PKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQ 198 (239)
T ss_pred ---CCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCcc
Confidence 22335689999999999999998873 6999999999999875
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=172.02 Aligned_cols=165 Identities=15% Similarity=0.064 Sum_probs=125.7
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc------
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE------ 143 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~------ 143 (413)
||++|||||+|+||.+++++|+++|++|++++|+... .. .. ..+.++.++++|++|.+++++++++
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~--~~---~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 72 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHP--SL---AA---AAGERLAEVELDLSDAAAAAAWLAGDLLAAF 72 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcch--hh---hh---ccCCeEEEEEeccCCHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999875432 11 11 1135688999999999999885543
Q ss_pred ---CCCcEEEEcCcccCcc-C----CcCChHHHHHHHHHHH----HHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVG-E----STLDPLKYYHNITSNT----LVVLESMARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~-~----~~~~~~~~~~~n~~~~----~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|++|||||...+. . ..+.....+++|+.++ +.+++.+.+.+.++||++||...+..
T Consensus 73 ~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~--------- 143 (243)
T PRK07023 73 VDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNA--------- 143 (243)
T ss_pred ccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCC---------
Confidence 3689999999975431 1 1223345677899984 44556665556679999999776532
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEeecceecC
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN--SDMAVMILRYFNVIGS 253 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~--~gi~~~~lrp~~v~G~ 253 (413)
..+...|+.+|.+.|.+++.++.+ .|+++++++||.+-.+
T Consensus 144 --~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 144 --YAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG 185 (243)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence 234678999999999999998875 6899999999988654
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=164.28 Aligned_cols=173 Identities=14% Similarity=0.110 Sum_probs=125.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |+|+||||+|+||.++++.|+++|++|++++|+........ .+.... .+++++++|+++++++.+++++
T Consensus 3 ~~~-~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~---~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (238)
T PRK05786 3 LKG-KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMK---KTLSKY-GNIHYVVGDVSSTESARNVIEKAAK 77 (238)
T ss_pred cCC-cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---HHHHhc-CCeEEEECCCCCHHHHHHHHHHHHH
Confidence 445 89999999999999999999999999999987543222221 222121 3688999999999999887754
Q ss_pred --CCCcEEEEcCcccCccCC--cCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES--TLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~--~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
.++|.+||++|....... .+..+..++.|+.+...+++.+.+. ..+++|++||...... +..+.
T Consensus 78 ~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~----------~~~~~ 147 (238)
T PRK05786 78 VLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYK----------ASPDQ 147 (238)
T ss_pred HhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhccc----------CCCCc
Confidence 458999999986432211 1223446788888866655555442 2368999999654211 12235
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
..|+.+|++.+.+++.++.+ .|++++++||+.++++.
T Consensus 148 ~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~ 187 (238)
T PRK05786 148 LSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDF 187 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCC
Confidence 67999999999999988876 48999999999999863
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-20 Score=166.10 Aligned_cols=228 Identities=18% Similarity=0.177 Sum_probs=161.8
Q ss_pred EEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEEEc
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMHF 152 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi~~ 152 (413)
|+||||||.+|+++++.|++.+++|+++.|+. .....+.++. .+++++.+|+.|.+++.+++ .++|+||.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~--~~~~~~~l~~-----~g~~vv~~d~~~~~~l~~al--~g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDP--SSDRAQQLQA-----LGAEVVEADYDDPESLVAAL--KGVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSS--HHHHHHHHHH-----TTTEEEES-TT-HHHHHHHH--TTCSEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEecc--chhhhhhhhc-----ccceEeecccCCHHHHHHHH--cCCceEEee
Confidence 79999999999999999999999999998865 2223333333 36788999999999999999 799999988
Q ss_pred CcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 015080 153 AAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIIL 232 (413)
Q Consensus 153 Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~ 232 (413)
-+.... .-.....++++++++.|+++||+.|....+. +.....|..+.-..|...|.+++
T Consensus 72 ~~~~~~------------~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~--------~~~~~~p~~~~~~~k~~ie~~l~ 131 (233)
T PF05368_consen 72 TPPSHP------------SELEQQKNLIDAAKAAGVKHFVPSSFGADYD--------ESSGSEPEIPHFDQKAEIEEYLR 131 (233)
T ss_dssp SSCSCC------------CHHHHHHHHHHHHHHHT-SEEEESEESSGTT--------TTTTSTTHHHHHHHHHHHHHHHH
T ss_pred cCcchh------------hhhhhhhhHHHhhhccccceEEEEEeccccc--------ccccccccchhhhhhhhhhhhhh
Confidence 764321 1234467899999999999999755544331 11122233445568888888887
Q ss_pred HHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHH--HhccccceeEecccccCCCCceeeecc-cH
Q 015080 233 DFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDA--ARGIIAGLKVKGTDYSTADGTCVRDYI-DV 309 (413)
Q Consensus 233 ~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~g~~~~~~~~~~~~~~i-~v 309 (413)
+ .++++++||||..+.. +...+... .......+.+.+ +++....++ +.
T Consensus 132 ~----~~i~~t~i~~g~f~e~-------------------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 182 (233)
T PF05368_consen 132 E----SGIPYTIIRPGFFMEN-------------------LLPPFAPVVDIKKSKDVVTLPG------PGNQKAVPVTDT 182 (233)
T ss_dssp H----CTSEBEEEEE-EEHHH-------------------HHTTTHHTTCSCCTSSEEEEET------TSTSEEEEEEHH
T ss_pred h----ccccceeccccchhhh-------------------hhhhhcccccccccceEEEEcc------CCCccccccccH
Confidence 7 6999999999986642 21111111 111111245555 666556675 99
Q ss_pred HHHHHHHHHHHHhcCCC-CccEEEecCCCcccHHHHHHHHHHHcCCCceeE
Q 015080 310 NDLVDAHVKALERAQPK-KVGIYNVGTGKGRSVKEFVEACKKATSANIKVI 359 (413)
Q Consensus 310 ~Dva~a~~~~~~~~~~~-~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~ 359 (413)
+|++++++.++..+... .++.+.+++ +.+|..|+++.+.+.+|+++++.
T Consensus 183 ~Dvg~~va~il~~p~~~~~~~~~~~~~-~~~t~~eia~~~s~~~G~~v~y~ 232 (233)
T PF05368_consen 183 RDVGRAVAAILLDPEKHNNGKTIFLAG-ETLTYNEIAAILSKVLGKKVKYV 232 (233)
T ss_dssp HHHHHHHHHHHHSGGGTTEEEEEEEGG-GEEEHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHcChHHhcCCEEEEeCC-CCCCHHHHHHHHHHHHCCccEEe
Confidence 99999999999986655 457888854 88999999999999999988764
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-20 Score=165.28 Aligned_cols=169 Identities=8% Similarity=0.048 Sum_probs=126.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+++||||+++||.+++++|+++|++|++++|+....+++.+.+.+ .+.++..+.+|++|++++++++++
T Consensus 3 ~~~-k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (227)
T PRK08862 3 IKS-SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSA---LTDNVYSFQLKDFSQESIRHLFDAIEQ 78 (227)
T ss_pred CCC-eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh---cCCCeEEEEccCCCHHHHHHHHHHHHH
Confidence 446 8999999999999999999999999999998755443333333333 235678889999999999887754
Q ss_pred --C-CCcEEEEcCcccCcc-CCcC-C---hHHHHHHHHHH----HHHHHHHHHHcC-CCEEEEeccceecCCCCCCCCCC
Q 015080 144 --N-AFDAVMHFAAVAYVG-ESTL-D---PLKYYHNITSN----TLVVLESMARHG-VDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 --~-~~dvvi~~Ag~~~~~-~~~~-~---~~~~~~~n~~~----~~~ll~~~~~~~-~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
. ++|++|||||..... ...+ + ....+++|+.+ ++.+++.+.+.+ .+.||++||...+
T Consensus 79 ~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~---------- 148 (227)
T PRK08862 79 QFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH---------- 148 (227)
T ss_pred HhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC----------
Confidence 4 799999999854322 2222 2 22345566666 345567776653 5799999995432
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
.+...|+.||++.+.+++.++.+ +|++++.|.||.+-.+
T Consensus 149 ----~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~ 190 (227)
T PRK08862 149 ----QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN 190 (227)
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence 12567999999999999999887 6899999999998765
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-20 Score=171.27 Aligned_cols=170 Identities=15% Similarity=0.146 Sum_probs=125.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+++||||+|+||.+++++|+++|++|++++|+... . +.+.+. .+..+.++++|++|.+++.+++++
T Consensus 3 ~~~-k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~-~~l~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (262)
T TIGR03325 3 LKG-EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAG---L-QELEAA--HGDAVVGVEGDVRSLDDHKEAVARCVA 75 (262)
T ss_pred cCC-cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH---H-HHHHhh--cCCceEEEEeccCCHHHHHHHHHHHHH
Confidence 345 899999999999999999999999999998864322 2 122221 134688899999999988877765
Q ss_pred --CCCcEEEEcCcccCcc-CC----c----CChHHHHHHHHHHHHHHHHHHHHc---CCCEEEEeccceecCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVG-ES----T----LDPLKYYHNITSNTLVVLESMARH---GVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~-~~----~----~~~~~~~~~n~~~~~~ll~~~~~~---~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|+||||||+.... .. . +..+..+++|+.++..+++++... ..+++|++||...+..
T Consensus 76 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~------- 148 (262)
T TIGR03325 76 AFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYP------- 148 (262)
T ss_pred HhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecC-------
Confidence 5799999999974321 11 1 124467889999977666665432 2368999888665421
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEeecceecCC
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKNS--DMAVMILRYFNVIGSD 254 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~lrp~~v~G~~ 254 (413)
......|+.||++.+.+++.++.+. .++++.|.||.+..+.
T Consensus 149 ----~~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~ 191 (262)
T TIGR03325 149 ----NGGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDL 191 (262)
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCC
Confidence 1225679999999999999999883 3999999999998764
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-20 Score=157.53 Aligned_cols=226 Identities=19% Similarity=0.187 Sum_probs=162.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.++| |++++|||.|+||.++.++|+++|..+.+++-+.++ .+....+++..+. ..+.|++||+++..++++++++
T Consensus 2 ~~tG-Kna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En-~~a~akL~ai~p~-~~v~F~~~DVt~~~~~~~~f~ki~ 78 (261)
T KOG4169|consen 2 DLTG-KNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEEN-PEAIAKLQAINPS-VSVIFIKCDVTNRGDLEAAFDKIL 78 (261)
T ss_pred cccC-ceEEEecCCchhhHHHHHHHHHcCchheeehhhhhC-HHHHHHHhccCCC-ceEEEEEeccccHHHHHHHHHHHH
Confidence 3557 999999999999999999999999988777644443 3444555665554 6899999999999999998887
Q ss_pred ---CCCcEEEEcCcccCccCCcCChHHHHHHHHHH----HHHHHHHHHHcC---CCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGESTLDPLKYYHNITSN----TLVVLESMARHG---VDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~----~~~ll~~~~~~~---~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
+.+|++||+||+.. +.+.+.++.+|+.| |...+++|.+.+ .+-||++||...+. |
T Consensus 79 ~~fg~iDIlINgAGi~~----dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~-----------P 143 (261)
T KOG4169|consen 79 ATFGTIDILINGAGILD----DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLD-----------P 143 (261)
T ss_pred HHhCceEEEEccccccc----chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccC-----------c
Confidence 78999999999874 45678888899887 778999998763 56899999966543 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh-----CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN-----SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
.+-...|++||+..-.++++++.. .|+++..++||.+-..-... +- ...... ..-..+.+.+...
T Consensus 144 ~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~~~-~~--~~~~~~---e~~~~~~~~l~~~---- 213 (261)
T KOG4169|consen 144 MPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLAEN-ID--ASGGYL---EYSDSIKEALERA---- 213 (261)
T ss_pred cccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHHHH-HH--hcCCcc---cccHHHHHHHHHc----
Confidence 333667999999999999986654 69999999999854321000 00 000000 0111222222211
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCC
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGK 337 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~ 337 (413)
.--...++++-++.+++.+..+ .+|-+..+.
T Consensus 214 ----------------~~q~~~~~a~~~v~aiE~~~NG--aiw~v~~g~ 244 (261)
T KOG4169|consen 214 ----------------PKQSPACCAINIVNAIEYPKNG--AIWKVDSGS 244 (261)
T ss_pred ----------------ccCCHHHHHHHHHHHHhhccCC--cEEEEecCc
Confidence 1235688999999999986554 689887664
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=160.57 Aligned_cols=189 Identities=15% Similarity=0.113 Sum_probs=139.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-CCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-NAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~~dvv 149 (413)
|+++||||+|+||.+++++|+++ ++|++++|+.. .+++|++|++++++++++ .++|+|
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~--------------------~~~~D~~~~~~~~~~~~~~~~id~l 59 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG--------------------DVQVDITDPASIRALFEKVGKVDAV 59 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC--------------------ceEecCCChHHHHHHHHhcCCCCEE
Confidence 47999999999999999999999 99999876421 357999999999998876 479999
Q ss_pred EEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHH
Q 015080 150 MHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKA 223 (413)
Q Consensus 150 i~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~s 223 (413)
|||||....... .++....+++|+.++.++++++... +.++|+++||..... +......|+.+
T Consensus 60 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~-----------~~~~~~~Y~~s 128 (199)
T PRK07578 60 VSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDE-----------PIPGGASAATV 128 (199)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCC-----------CCCCchHHHHH
Confidence 999997543322 2234456789999988877766542 346899999866432 22236789999
Q ss_pred HHHHHHHHHHHHhh--CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCc
Q 015080 224 KKMAEDIILDFSKN--SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGT 301 (413)
Q Consensus 224 K~~~e~~~~~~~~~--~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 301 (413)
|++.+.+++.++.+ .|++++.|+||.+-.+.. ......+ .
T Consensus 129 K~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~~------------------------~~~~~~~------------~-- 170 (199)
T PRK07578 129 NGALEGFVKAAALELPRGIRINVVSPTVLTESLE------------------------KYGPFFP------------G-- 170 (199)
T ss_pred HHHHHHHHHHHHHHccCCeEEEEEcCCcccCchh------------------------hhhhcCC------------C--
Confidence 99999999999886 689999999998754310 0000001 0
Q ss_pred eeeecccHHHHHHHHHHHHHhcCCCCccEEEe
Q 015080 302 CVRDYIDVNDLVDAHVKALERAQPKKVGIYNV 333 (413)
Q Consensus 302 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni 333 (413)
..++..+|+|+++..++.... .+++|++
T Consensus 171 --~~~~~~~~~a~~~~~~~~~~~--~g~~~~~ 198 (199)
T PRK07578 171 --FEPVPAARVALAYVRSVEGAQ--TGEVYKV 198 (199)
T ss_pred --CCCCCHHHHHHHHHHHhccce--eeEEecc
Confidence 135789999999999988643 3467776
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=174.97 Aligned_cols=264 Identities=19% Similarity=0.228 Sum_probs=186.0
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCC---EEEEEecCCCCCchhhhhhhhhc------------C-CCCceEEEEccC
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSY---RVTIVDNLSRGNIGAVKVLQELF------------P-EPGRLQFIYADL 131 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~Dl 131 (413)
.+ |+|||||||||+|.-+++.|+..-- +++++-|..+..+ ..+.+..+. + .-.++..+.+|+
T Consensus 11 ~~-k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~-~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi 88 (467)
T KOG1221|consen 11 KN-KTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKA-AQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDI 88 (467)
T ss_pred CC-CeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCC-HHHHHHHHHhhhHHHHHHhhCccceecceeccccc
Confidence 35 9999999999999999999998742 6777777554433 222222211 1 125788899999
Q ss_pred CCHH------HHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccceecCCC-
Q 015080 132 GDAK------AVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-GVDTLIYSSTCATYGEP- 203 (413)
Q Consensus 132 ~d~~------~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~iV~~SS~~~~~~~- 203 (413)
++++ +++.+. ..+|+|||+||-..+ .+.......+|+.||+++++.|++. +.+-+|++|++++.-..
T Consensus 89 ~~~~LGis~~D~~~l~--~eV~ivih~AAtvrF---de~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~ 163 (467)
T KOG1221|consen 89 SEPDLGISESDLRTLA--DEVNIVIHSAATVRF---DEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVG 163 (467)
T ss_pred cCcccCCChHHHHHHH--hcCCEEEEeeeeecc---chhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheecccc
Confidence 8754 444344 689999999997654 3345667889999999999999987 57899999998775211
Q ss_pred --CCCCCCCCC-----------------------C---CCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCC
Q 015080 204 --EKMPITEET-----------------------P---QAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDP 255 (413)
Q Consensus 204 --~~~~~~e~~-----------------------~---~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~ 255 (413)
.+.+..+.. + ....+.|.-+|+.+|.++.+.+ .+++++++||+.|.....
T Consensus 164 ~i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~--~~lPivIiRPsiI~st~~ 241 (467)
T KOG1221|consen 164 HIEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEA--ENLPLVIIRPSIITSTYK 241 (467)
T ss_pred cccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhc--cCCCeEEEcCCceecccc
Confidence 111111110 0 1235679999999999998865 469999999999999998
Q ss_pred CCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCC----ccEE
Q 015080 256 EGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKK----VGIY 331 (413)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~----~~~y 331 (413)
++-.||.++.. ...+.++...++... .+.. +.+...|+|.||.|+++++.+.-...... ..+|
T Consensus 242 EP~pGWidn~~-----gp~g~i~g~gkGvlr--~~~~------d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY 308 (467)
T KOG1221|consen 242 EPFPGWIDNLN-----GPDGVIIGYGKGVLR--CFLV------DPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIY 308 (467)
T ss_pred CCCCCccccCC-----CCceEEEEeccceEE--EEEE------ccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEE
Confidence 88888887743 222222222222222 1112 77888999999999999997774322111 2499
Q ss_pred EecCCC--cccHHHHHHHHHHHcC
Q 015080 332 NVGTGK--GRSVKEFVEACKKATS 353 (413)
Q Consensus 332 ni~~~~--~~s~~e~~~~i~~~~g 353 (413)
|+++++ +++|.++.+...+.+.
T Consensus 309 ~~tss~~Np~t~~~~~e~~~~~~~ 332 (467)
T KOG1221|consen 309 HLTSSNDNPVTWGDFIELALRYFE 332 (467)
T ss_pred EecccccCcccHHHHHHHHHHhcc
Confidence 998876 5899999999998875
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-20 Score=168.11 Aligned_cols=170 Identities=14% Similarity=0.058 Sum_probs=125.1
Q ss_pred EEEEEcCCChHHHHHHHHHHH----CCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 72 HVLVTGGAGYIGSHAALRLLK----DSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~----~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
.++||||+++||.+++++|++ .|++|++++|+....+++.+.++... .+..+.++.+|++|.++++++++.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~v~~~~~Dl~~~~~v~~~~~~~~~~ 80 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAER-SGLRVVRVSLDLGAEAGLEQLLKALREL 80 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcC-CCceEEEEEeccCCHHHHHHHHHHHHhc
Confidence 589999999999999999997 79999999876544444444343211 124688999999999998887754
Q ss_pred C-----CCcEEEEcCcccCcc-C-C-----cCChHHHHHHHHHHHH----HHHHHHHHc-C-CCEEEEeccceecCCCCC
Q 015080 144 N-----AFDAVMHFAAVAYVG-E-S-----TLDPLKYYHNITSNTL----VVLESMARH-G-VDTLIYSSTCATYGEPEK 205 (413)
Q Consensus 144 ~-----~~dvvi~~Ag~~~~~-~-~-----~~~~~~~~~~n~~~~~----~ll~~~~~~-~-~~~iV~~SS~~~~~~~~~ 205 (413)
. +.|+||||||..... . . .+..+..+++|+.++. .+++.+++. + .++||++||...+..
T Consensus 81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~--- 157 (256)
T TIGR01500 81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQP--- 157 (256)
T ss_pred cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCC---
Confidence 1 136999999974321 1 1 1234567889999954 455555544 2 368999999765422
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 206 MPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 206 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
......|+.||++.+.+++.++.+ .|++++.+.||.|-.+
T Consensus 158 --------~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~ 200 (256)
T TIGR01500 158 --------FKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTD 200 (256)
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccch
Confidence 223678999999999999999887 5899999999998764
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=163.39 Aligned_cols=159 Identities=14% Similarity=0.119 Sum_probs=119.9
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--CCCcEE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--NAFDAV 149 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~~~dvv 149 (413)
+++||||+|+||+++++.|+++|++|++++|+..+ ..+...+ .++.++++|++|++++++++++ .++|+|
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~---~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~id~l 73 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDD---LEVAAKE-----LDVDAIVCDNTDPASLEEARGLFPHHLDTI 73 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHh-----ccCcEEecCCCCHHHHHHHHHHHhhcCcEE
Confidence 69999999999999999999999999998875322 2222222 1367889999999999988764 369999
Q ss_pred EEcCcccCc---c---C---CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCCCCCC
Q 015080 150 MHFAAVAYV---G---E---STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQAPIN 218 (413)
Q Consensus 150 i~~Ag~~~~---~---~---~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~ 218 (413)
|||||.... + . ..++....+++|+.++.++++++... ..++||++||... .+..
T Consensus 74 v~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~---------------~~~~ 138 (223)
T PRK05884 74 VNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP---------------PAGS 138 (223)
T ss_pred EECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC---------------CCcc
Confidence 999985311 0 0 12334567889999966666665432 2379999999541 1246
Q ss_pred hhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 219 PYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 219 ~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
.|+.||++.+.+++.++.+ +|++++.|.||.+..+
T Consensus 139 ~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~ 176 (223)
T PRK05884 139 AEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQP 176 (223)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCch
Confidence 8999999999999999887 6899999999988643
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-20 Score=154.18 Aligned_cols=169 Identities=19% Similarity=0.189 Sum_probs=130.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
+.+| .+||||||+++||.+||++|.+.|.+|++++|+.. .+.+..++ ...+....||+.|.++.+++++.
T Consensus 2 k~tg-nTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~---~L~e~~~~----~p~~~t~v~Dv~d~~~~~~lvewLk 73 (245)
T COG3967 2 KTTG-NTILITGGASGIGLALAKRFLELGNTVIICGRNEE---RLAEAKAE----NPEIHTEVCDVADRDSRRELVEWLK 73 (245)
T ss_pred cccC-cEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHH---HHHHHHhc----CcchheeeecccchhhHHHHHHHHH
Confidence 3456 89999999999999999999999999999876433 33333222 36788899999999988887765
Q ss_pred ---CCCcEEEEcCcccCccC------CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE------STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~------~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
..+++||||||+...-+ ..++.++..++|+.+ +..+++.+.+..-..||++||...+-
T Consensus 74 k~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafv--------- 144 (245)
T COG3967 74 KEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFV--------- 144 (245)
T ss_pred hhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccC---------
Confidence 56899999999875432 222334567789888 55566777777667999999977653
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
|......|+++|++...+..+++.+ .++.|.-+-|+.|-.+
T Consensus 145 --Pm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 145 --PMASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred --cccccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 2333556999999999999998877 5899999999998875
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=154.76 Aligned_cols=303 Identities=19% Similarity=0.196 Sum_probs=220.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-CCE-EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-SYR-VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
.+|||||+-|.+|..+|..|... |.+ |++-|.-.++.. . -..-.++..|+.|...+++.+-..++|-
T Consensus 45 PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~-V----------~~~GPyIy~DILD~K~L~eIVVn~RIdW 113 (366)
T KOG2774|consen 45 PRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPAN-V----------TDVGPYIYLDILDQKSLEEIVVNKRIDW 113 (366)
T ss_pred CeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchh-h----------cccCCchhhhhhccccHHHhhcccccce
Confidence 68999999999999999999766 664 665443332221 1 1233567899999999999998889999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCC-CCCCCCCCCCCCCChhHHHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPE-KMPITEETPQAPINPYGKAKKMA 227 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~-~~~~~e~~~~~~~~~Y~~sK~~~ 227 (413)
+||..+.... .-+.+......+|+.|..|+++.+++++. ++..-|+.+.||... .+|-..-.-..|.+.|+.||..+
T Consensus 114 L~HfSALLSA-vGE~NVpLA~~VNI~GvHNil~vAa~~kL-~iFVPSTIGAFGPtSPRNPTPdltIQRPRTIYGVSKVHA 191 (366)
T KOG2774|consen 114 LVHFSALLSA-VGETNVPLALQVNIRGVHNILQVAAKHKL-KVFVPSTIGAFGPTSPRNPTPDLTIQRPRTIYGVSKVHA 191 (366)
T ss_pred eeeHHHHHHH-hcccCCceeeeecchhhhHHHHHHHHcCe-eEeecccccccCCCCCCCCCCCeeeecCceeechhHHHH
Confidence 9998875321 12344556778999999999999999987 677788899998653 33333334456788999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecc
Q 015080 228 EDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307 (413)
Q Consensus 228 e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i 307 (413)
|.+-+.+..++|+++-++|.+.++...+.+. |..+ ..+..+..+.++++-...+ .++.....+
T Consensus 192 EL~GEy~~hrFg~dfr~~rfPg~is~~~pgg-gttd--------ya~A~f~~Al~~gk~tCyl--------rpdtrlpmm 254 (366)
T KOG2774|consen 192 ELLGEYFNHRFGVDFRSMRFPGIISATKPGG-GTTD--------YAIAIFYDALQKGKHTCYL--------RPDTRLPMM 254 (366)
T ss_pred HHHHHHHHhhcCccceecccCcccccCCCCC-Ccch--------hHHHHHHHHHHcCCccccc--------CCCccCcee
Confidence 9999999888999999999988887643321 2211 4556667777777643444 456677889
Q ss_pred cHHHHHHHHHHHHHhcCC-CCccEEEecCCCcccHHHHHHHHHHHcC-CCceeEecC-CCCCCccccccCHHHHHHhcCc
Q 015080 308 DVNDLVDAHVKALERAQP-KKVGIYNVGTGKGRSVKEFVEACKKATS-ANIKVIYEP-RRPGDYAEVYSDPTKIRLELNW 384 (413)
Q Consensus 308 ~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~-~~~~~~~~~~~d~~k~~~~lG~ 384 (413)
|..|+-++++..+..+.. -..++||++ +.++|-.|++.++.+.+. .++.+.... ....+.....+|.+.+++++.|
T Consensus 255 y~~dc~~~~~~~~~a~~~~lkrr~ynvt-~~sftpee~~~~~~~~~p~~~i~y~~~srq~iad~wp~~~dds~ar~~wh~ 333 (366)
T KOG2774|consen 255 YDTDCMASVIQLLAADSQSLKRRTYNVT-GFSFTPEEIADAIRRVMPGFEIDYDICTRQSIADSWPMSLDDSEARTEWHE 333 (366)
T ss_pred ehHHHHHHHHHHHhCCHHHhhhheeeec-eeccCHHHHHHHHHhhCCCceeecccchhhhhhhhcccccCchhHhhHHHH
Confidence 999999999998885422 123699995 789999999999999874 333332211 1122233457899999999999
Q ss_pred ccccccHHHHHHHHHHHHHhc
Q 015080 385 TAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 385 ~p~~~~~~e~l~~~~~~~~~~ 405 (413)
+.++ .+...+.-++.-.+++
T Consensus 334 ~h~~-~l~~~i~~~i~~~~~n 353 (366)
T KOG2774|consen 334 KHSL-HLLSIISTVVAVHKSN 353 (366)
T ss_pred hhhh-hHHHHHHHHHHHHHhh
Confidence 9988 7777776666555544
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-19 Score=160.16 Aligned_cols=165 Identities=18% Similarity=0.138 Sum_probs=130.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-------
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE------- 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~------- 143 (413)
|.|||||+-++.|..+|++|.++|++|.+.+..+...+.+....+ .++...++.|++++++++++.+.
T Consensus 30 k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~-----s~rl~t~~LDVT~~esi~~a~~~V~~~l~~ 104 (322)
T KOG1610|consen 30 KAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK-----SPRLRTLQLDVTKPESVKEAAQWVKKHLGE 104 (322)
T ss_pred cEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc-----CCcceeEeeccCCHHHHHHHHHHHHHhccc
Confidence 889999999999999999999999999988844443333332221 36788889999999999987753
Q ss_pred CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.+.-.||||||+..+ ++ ..++....+++|..| |+.+++.++++. +|||++||.+.- .+.
T Consensus 105 ~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar-GRvVnvsS~~GR-----------~~~ 172 (322)
T KOG1610|consen 105 DGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR-GRVVNVSSVLGR-----------VAL 172 (322)
T ss_pred ccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc-CeEEEecccccC-----------ccC
Confidence 568899999997532 22 334566688999999 677788888875 699999997652 233
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
+...+|+.||++.|.+...++.| +|+++.+|-|| +|-.
T Consensus 173 p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG-~f~T 213 (322)
T KOG1610|consen 173 PALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPG-FFKT 213 (322)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccC-cccc
Confidence 34788999999999999999988 89999999999 4433
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=157.74 Aligned_cols=166 Identities=18% Similarity=0.113 Sum_probs=126.0
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---CCC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---NAF 146 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---~~~ 146 (413)
||+++||||+|+||++++++|+++|++|++++|+....+ .+.. .+++++.+|+++.++++++++. .++
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~----~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 71 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALA----ALQA-----LGAEALALDVADPASVAGLAWKLDGEAL 71 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHH----HHHh-----ccceEEEecCCCHHHHHHHHHHhcCCCC
Confidence 689999999999999999999999999999987543221 2221 2467899999999999887543 469
Q ss_pred cEEEEcCcccCccC------CcCChHHHHHHHHHHHHHHHHHHHH---cCCCEEEEeccce-ecCCCCCCCCCCCCCCCC
Q 015080 147 DAVMHFAAVAYVGE------STLDPLKYYHNITSNTLVVLESMAR---HGVDTLIYSSTCA-TYGEPEKMPITEETPQAP 216 (413)
Q Consensus 147 dvvi~~Ag~~~~~~------~~~~~~~~~~~n~~~~~~ll~~~~~---~~~~~iV~~SS~~-~~~~~~~~~~~e~~~~~~ 216 (413)
|+||||||...... ..++.+..+++|+.++..+++++.. ...+++|++||.. .++... ..+
T Consensus 72 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------~~~ 142 (222)
T PRK06953 72 DAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDAT---------GTT 142 (222)
T ss_pred CEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCccccccccc---------CCC
Confidence 99999999763221 2334566899999998888887764 2346899999864 343211 112
Q ss_pred CChhHHHHHHHHHHHHHHHhh-CCCcEEEEeecceecC
Q 015080 217 INPYGKAKKMAEDIILDFSKN-SDMAVMILRYFNVIGS 253 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~-~gi~~~~lrp~~v~G~ 253 (413)
...|+.+|.+.+.+++.++.+ .+++++.++||.+..+
T Consensus 143 ~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~ 180 (222)
T PRK06953 143 GWLYRASKAALNDALRAASLQARHATCIALHPGWVRTD 180 (222)
T ss_pred ccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecC
Confidence 246999999999999998877 4899999999998765
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=162.98 Aligned_cols=228 Identities=11% Similarity=-0.024 Sum_probs=145.8
Q ss_pred CCCCceEEEEEcC--CChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhc-------CC---CCceEEEEccC--
Q 015080 66 HEEGVTHVLVTGG--AGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELF-------PE---PGRLQFIYADL-- 131 (413)
Q Consensus 66 ~~~~~k~vlITGa--sG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~Dl-- 131 (413)
.+++ |++||||| |++||.++|+.|++.|++|++ +|.....++....+.+.. .. ......+.+|+
T Consensus 6 ~l~g-k~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 83 (303)
T PLN02730 6 DLRG-KRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVF 83 (303)
T ss_pred CCCC-CEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceec
Confidence 4667 99999999 899999999999999999988 554444443332222100 00 01246788898
Q ss_pred CC------------------HHHHHHHhhc-----CCCcEEEEcCcccCc--cC----CcCChHHHHHHHHHHHH----H
Q 015080 132 GD------------------AKAVNKFFSE-----NAFDAVMHFAAVAYV--GE----STLDPLKYYHNITSNTL----V 178 (413)
Q Consensus 132 ~d------------------~~~~~~~~~~-----~~~dvvi~~Ag~~~~--~~----~~~~~~~~~~~n~~~~~----~ 178 (413)
++ +++++++++. .++|+||||||+... .. ..++....+++|+.+.. .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~ 163 (303)
T PLN02730 84 DTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQH 163 (303)
T ss_pred CccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence 33 3366666654 579999999975321 11 23345567889999954 4
Q ss_pred HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHHhh----CCCcEEEEeecceecC
Q 015080 179 VLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI-NPYGKAKKMAEDIILDFSKN----SDMAVMILRYFNVIGS 253 (413)
Q Consensus 179 ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~-~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~G~ 253 (413)
+++.|++. ++||++||....-. .+.. ..|+.||++.+.+++.++.+ +|++++.|.||.|-.+
T Consensus 164 ~~p~m~~~--G~II~isS~a~~~~-----------~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~T~ 230 (303)
T PLN02730 164 FGPIMNPG--GASISLTYIASERI-----------IPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLGSR 230 (303)
T ss_pred HHHHHhcC--CEEEEEechhhcCC-----------CCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCccCc
Confidence 55556543 79999999664321 1113 37999999999999999887 3799999999998765
Q ss_pred CCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEE
Q 015080 254 DPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYN 332 (413)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yn 332 (413)
.... . ...+..........+ ...+...+|++.++++++.... ...++++.
T Consensus 231 ~~~~-~------------~~~~~~~~~~~~~~p----------------l~r~~~peevA~~~~fLaS~~a~~itG~~l~ 281 (303)
T PLN02730 231 AAKA-I------------GFIDDMIEYSYANAP----------------LQKELTADEVGNAAAFLASPLASAITGATIY 281 (303)
T ss_pred hhhc-c------------cccHHHHHHHHhcCC----------------CCCCcCHHHHHHHHHHHhCccccCccCCEEE
Confidence 3210 0 000111111111101 1134678999999999987432 22446777
Q ss_pred ecCCC
Q 015080 333 VGTGK 337 (413)
Q Consensus 333 i~~~~ 337 (413)
+.++.
T Consensus 282 vdGG~ 286 (303)
T PLN02730 282 VDNGL 286 (303)
T ss_pred ECCCc
Confidence 75553
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-19 Score=161.68 Aligned_cols=169 Identities=15% Similarity=0.178 Sum_probs=124.9
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---CCC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---NAF 146 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---~~~ 146 (413)
||+++||||+|+||++++++|+++|++|++++|+..+... +.+. .++.++.+|++|.++++++++. .++
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~----~~~~----~~~~~~~~D~~d~~~~~~~~~~~~~~~i 72 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTA----LQAL----PGVHIEKLDMNDPASLDQLLQRLQGQRF 72 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHH----HHhc----cccceEEcCCCCHHHHHHHHHHhhcCCC
Confidence 5899999999999999999999999999999986544322 2221 3577889999999998887765 479
Q ss_pred cEEEEcCcccCccC------CcCChHHHHHHHHHHHHHHHHHHHHc---CCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 147 DAVMHFAAVAYVGE------STLDPLKYYHNITSNTLVVLESMARH---GVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 147 dvvi~~Ag~~~~~~------~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
|+||||||+..... ..++....+++|+.++..+++++... +.++++++||..... . ..+..+.
T Consensus 73 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~~--~------~~~~~~~ 144 (225)
T PRK08177 73 DLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGSV--E------LPDGGEM 144 (225)
T ss_pred CEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCcccc--c------cCCCCCc
Confidence 99999999853311 12233446678888877776665432 346899998853221 1 0112235
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
..|+.+|++.+.+++.++.+ .+++++.++||.+-.+.
T Consensus 145 ~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~ 184 (225)
T PRK08177 145 PLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDM 184 (225)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCC
Confidence 57999999999999999877 57999999999987653
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-18 Score=157.06 Aligned_cols=205 Identities=12% Similarity=0.090 Sum_probs=139.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-CCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-NAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~~d 147 (413)
|+|+||||+|+||++++++|+++| +.|+..+|..... . . ..++.++++|++|.++++++.+. .++|
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~------~----~-~~~~~~~~~Dls~~~~~~~~~~~~~~id 69 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD------F----Q-HDNVQWHALDVTDEAEIKQLSEQFTQLD 69 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc------c----c-cCceEEEEecCCCHHHHHHHHHhcCCCC
Confidence 479999999999999999999985 5565555432211 0 1 24688899999999998886654 5799
Q ss_pred EEEEcCcccCccC------Cc----CChHHHHHHHHHHHH----HHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 148 AVMHFAAVAYVGE------ST----LDPLKYYHNITSNTL----VVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 148 vvi~~Ag~~~~~~------~~----~~~~~~~~~n~~~~~----~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
+||||||...... .. +.....+++|+.++. .+++.+++.+.++++++||... .... .+
T Consensus 70 ~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~--~~~~------~~ 141 (235)
T PRK09009 70 WLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVG--SISD------NR 141 (235)
T ss_pred EEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeeccc--cccc------CC
Confidence 9999999864211 11 123346778888854 4555555555678999988432 1110 12
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh-----CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN-----SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
..+...|+.+|++.+.+++.++.+ .+++++.+.||.+..+... . .....+
T Consensus 142 ~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~---------------~--------~~~~~~-- 196 (235)
T PRK09009 142 LGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSK---------------P--------FQQNVP-- 196 (235)
T ss_pred CCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCc---------------c--------hhhccc--
Confidence 234568999999999999999876 4799999999998875311 0 000011
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCC-CccEEEe
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK-KVGIYNV 333 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~-~~~~yni 333 (413)
...++..+|+|++++.++...... .+..+.+
T Consensus 197 --------------~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~ 228 (235)
T PRK09009 197 --------------KGKLFTPEYVAQCLLGIIANATPAQSGSFLAY 228 (235)
T ss_pred --------------cCCCCCHHHHHHHHHHHHHcCChhhCCcEEee
Confidence 123578899999999999865322 3345544
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.9e-19 Score=167.36 Aligned_cols=175 Identities=13% Similarity=0.103 Sum_probs=125.2
Q ss_pred EEEcCCChHHHHHHHHHHHCC-CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CCCc
Q 015080 74 LVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NAFD 147 (413)
Q Consensus 74 lITGasG~IG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~~d 147 (413)
|||||+++||.+++++|+++| ++|++++|+.. ...+...++...+..+.++.+|++|.+++++++++ .++|
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~---~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD 77 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFL---KAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLD 77 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHH---HHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCC
Confidence 699999999999999999999 99999876533 22223333322234688899999999999887764 4699
Q ss_pred EEEEcCcccCcc-C----CcCChHHHHHHHHHH----HHHHHHHHHHcC--CCEEEEeccceecCCC-----CC----CC
Q 015080 148 AVMHFAAVAYVG-E----STLDPLKYYHNITSN----TLVVLESMARHG--VDTLIYSSTCATYGEP-----EK----MP 207 (413)
Q Consensus 148 vvi~~Ag~~~~~-~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~--~~~iV~~SS~~~~~~~-----~~----~~ 207 (413)
+||||||+.... . ..++.+..+++|+.+ ++.+++.+++.+ .++||++||...+-.. .. ..
T Consensus 78 ~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~ 157 (308)
T PLN00015 78 VLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 157 (308)
T ss_pred EEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhh
Confidence 999999975321 1 223445688999999 555677777665 5799999997654110 00 00
Q ss_pred ----------------CCCCCCCCCCChhHHHHHHHHHHHHHHHhh----CCCcEEEEeecceec
Q 015080 208 ----------------ITEETPQAPINPYGKAKKMAEDIILDFSKN----SDMAVMILRYFNVIG 252 (413)
Q Consensus 208 ----------------~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~G 252 (413)
+++ .+..+..+|+.||++.+.+++.++.+ .|+++++++||.|..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~-~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~ 221 (308)
T PLN00015 158 LRGLAGGLNGLNSSAMIDG-GEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIAT 221 (308)
T ss_pred hhhhhcccCCccchhhccc-cCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccC
Confidence 001 12345678999999988888888775 479999999999964
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-19 Score=151.25 Aligned_cols=155 Identities=18% Similarity=0.276 Sum_probs=121.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
|+++||||+|+||.+++++|+++|. +|++++|+ .+.+...+...++...+.++.++++|+++.+++++++++ .
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS-EDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-CHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999999966 67777765 223333444444443457899999999999999988876 6
Q ss_pred CCcEEEEcCcccCccCCcC----ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChh
Q 015080 145 AFDAVMHFAAVAYVGESTL----DPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPY 220 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~~~----~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y 220 (413)
.+|+||||||........+ .....+++|+.+...+.+++...+.++||++||....-. .....+|
T Consensus 80 ~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-----------~~~~~~Y 148 (167)
T PF00106_consen 80 PLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGVRG-----------SPGMSAY 148 (167)
T ss_dssp SESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGTSS-----------STTBHHH
T ss_pred cccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhccC-----------CCCChhH
Confidence 8999999999876443333 234578899999888888887766789999999776532 2336789
Q ss_pred HHHHHHHHHHHHHHHhh
Q 015080 221 GKAKKMAEDIILDFSKN 237 (413)
Q Consensus 221 ~~sK~~~e~~~~~~~~~ 237 (413)
+.+|++.+.+++.+++|
T Consensus 149 ~askaal~~~~~~la~e 165 (167)
T PF00106_consen 149 SASKAALRGLTQSLAAE 165 (167)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999876
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-19 Score=150.03 Aligned_cols=163 Identities=14% Similarity=0.045 Sum_probs=126.4
Q ss_pred eEEEEEcC-CChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc------
Q 015080 71 THVLVTGG-AGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE------ 143 (413)
Q Consensus 71 k~vlITGa-sG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~------ 143 (413)
|.|||||+ +|+||.+|+++|.++|+.|+.+.|..+....+... .++...++|+++++++..+..+
T Consensus 8 k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~--------~gl~~~kLDV~~~~~V~~v~~evr~~~~ 79 (289)
T KOG1209|consen 8 KKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ--------FGLKPYKLDVSKPEEVVTVSGEVRANPD 79 (289)
T ss_pred CeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh--------hCCeeEEeccCChHHHHHHHHHHhhCCC
Confidence 78999986 79999999999999999999998765544433322 4688999999999998876654
Q ss_pred CCCcEEEEcCcccCccCCc----CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 144 NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
+++|++|||||..-..+.. ...+..+++|+.| ++.+.+.+.+. .+.||++.|..+|- |.+
T Consensus 80 Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~lika-KGtIVnvgSl~~~v-----------pfp 147 (289)
T KOG1209|consen 80 GKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKA-KGTIVNVGSLAGVV-----------PFP 147 (289)
T ss_pred CceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHc-cceEEEecceeEEe-----------ccc
Confidence 6799999999975433322 2344578899999 44444444444 47999999988874 333
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
..+.|.+||++...+.+.++-| +|++++.+-+|.|-..
T Consensus 148 f~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T~ 188 (289)
T KOG1209|consen 148 FGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVATD 188 (289)
T ss_pred hhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceecc
Confidence 3678999999999999999877 7999999999987654
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.1e-19 Score=178.20 Aligned_cols=169 Identities=17% Similarity=0.151 Sum_probs=128.5
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
.+ |++|||||+++||.+++++|+++|++|++++|+..+ ..+...++ +..+.++.+|++|++++++++++
T Consensus 4 ~~-k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (520)
T PRK06484 4 QS-RVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVER---ARERADSL---GPDHHALAMDVSDEAQIREGFEQLHRE 76 (520)
T ss_pred CC-eEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHh---CCceeEEEeccCCHHHHHHHHHHHHHH
Confidence 45 899999999999999999999999999999875433 22222222 24678899999999999888765
Q ss_pred -CCCcEEEEcCcccCc--c----CCcCChHHHHHHHHHHHHHHH----HHHHHcCCC-EEEEeccceecCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYV--G----ESTLDPLKYYHNITSNTLVVL----ESMARHGVD-TLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~--~----~~~~~~~~~~~~n~~~~~~ll----~~~~~~~~~-~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+..+ . ...++.+..+++|+.++..++ +.+++.+.+ +||++||........
T Consensus 77 ~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~~------- 149 (520)
T PRK06484 77 FGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVALP------- 149 (520)
T ss_pred hCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCCC-------
Confidence 579999999997421 1 122334567889999866554 444444444 999999976543222
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
....|+.+|++.+.+++.++.+ .|++++.++||.|-.+.
T Consensus 150 ----~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~ 191 (520)
T PRK06484 150 ----KRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQM 191 (520)
T ss_pred ----CCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchh
Confidence 2568999999999999999887 58999999999987653
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-18 Score=169.58 Aligned_cols=168 Identities=15% Similarity=0.085 Sum_probs=127.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ +++|||||+|+||.++++.|+++|++|+++++.. ..+...+...++ +..++.+|++|.++++++++.
T Consensus 208 ~~g-~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~-~~~~l~~~~~~~-----~~~~~~~Dv~~~~~~~~~~~~~~~ 280 (450)
T PRK08261 208 LAG-KVALVTGAARGIGAAIAEVLARDGAHVVCLDVPA-AGEALAAVANRV-----GGTALALDITAPDAPARIAEHLAE 280 (450)
T ss_pred CCC-CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCc-cHHHHHHHHHHc-----CCeEEEEeCCCHHHHHHHHHHHHH
Confidence 446 8999999999999999999999999999988632 222222222222 346788999999998887764
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHc----CCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARH----GVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..+..+..+++|+.++.++++++... ..++||++||...+....
T Consensus 281 ~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~~--------- 351 (450)
T PRK08261 281 RHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGNR--------- 351 (450)
T ss_pred hCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCC---------
Confidence 36999999999764332 22334557889999999998888763 337999999976543222
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceec
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIG 252 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G 252 (413)
....|+.+|++.+.+++.++.+ .|++++++.||.+-.
T Consensus 352 --~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t 391 (450)
T PRK08261 352 --GQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIET 391 (450)
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcc
Confidence 2578999999999999988776 689999999998754
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-18 Score=155.33 Aligned_cols=162 Identities=14% Similarity=0.158 Sum_probs=109.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
++++ |+++||||+|+||++++++|+++|++|++++|+.... . +... . .....+.+|++|.+++.+.+ .+
T Consensus 11 ~l~~-k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~--~-~~~~----~-~~~~~~~~D~~~~~~~~~~~--~~ 79 (245)
T PRK12367 11 TWQG-KRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINN--S-ESND----E-SPNEWIKWECGKEESLDKQL--AS 79 (245)
T ss_pred hhCC-CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhh--h-hhhc----c-CCCeEEEeeCCCHHHHHHhc--CC
Confidence 3456 8999999999999999999999999999998754211 1 1111 1 12357889999999998887 68
Q ss_pred CcEEEEcCcccCccC-CcCChHHHHHHHHHHHHHHHHHH----HHc---CCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE-STLDPLKYYHNITSNTLVVLESM----ARH---GVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~-~~~~~~~~~~~n~~~~~~ll~~~----~~~---~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|++|||||+..... ..++....+++|+.++.++++++ ++. +.+.++..||.+... + ...
T Consensus 80 iDilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~-----------~-~~~ 147 (245)
T PRK12367 80 LDVLILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ-----------P-ALS 147 (245)
T ss_pred CCEEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC-----------C-CCC
Confidence 999999999753322 23455668899999966666554 332 222344445543221 1 124
Q ss_pred ChhHHHHHHHHHHH---HHHHhh---CCCcEEEEeecce
Q 015080 218 NPYGKAKKMAEDII---LDFSKN---SDMAVMILRYFNV 250 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~---~~~~~~---~gi~~~~lrp~~v 250 (413)
..|++||++.+.+. +++..+ .++.+..+.||.+
T Consensus 148 ~~Y~aSKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~ 186 (245)
T PRK12367 148 PSYEISKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPF 186 (245)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhcccccEEEEecCCCc
Confidence 57999999986543 233222 5788888888764
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-18 Score=152.56 Aligned_cols=172 Identities=19% Similarity=0.167 Sum_probs=139.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
.+|+|||||.+||.+++..+..+|++|+++.|+.++..++.+.++-.... .++.+..+|+.|.+++..++++ ..
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~-~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~ 112 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQV-EDVSYKSVDVIDYDSVSKVIEELRDLEGP 112 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhcc-ceeeEeccccccHHHHHHHHhhhhhccCC
Confidence 58999999999999999999999999999998877777777766655444 3488999999999999998877 37
Q ss_pred CcEEEEcCcccCccCCcCCh----HHHHHHHHHHHHHHHHHH----HHcC-CCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGESTLDP----LKYYHNITSNTLVVLESM----ARHG-VDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~----~~~~~~n~~~~~~ll~~~----~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
+|.+|||||...++...+.. +..+++|..|+.+++.+. ++.. .++|+.+||....- +..+
T Consensus 113 ~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~-----------~i~G 181 (331)
T KOG1210|consen 113 IDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAML-----------GIYG 181 (331)
T ss_pred cceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhc-----------Cccc
Confidence 99999999988776654433 347889999977766554 4443 56999999965432 2333
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
+++|+.+|.+...+...+++| +|+.++...|+.+-.|+
T Consensus 182 ysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpG 222 (331)
T KOG1210|consen 182 YSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPG 222 (331)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCc
Confidence 889999999999999999988 68999999999988886
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-18 Score=147.43 Aligned_cols=169 Identities=16% Similarity=0.152 Sum_probs=127.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
++++||||+|+||.+++++|+++|+ .|++++|+..........+.++...+.++.++.+|+++++++.+++++ .
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999997 677777755444333222233322345788899999999988887654 4
Q ss_pred CCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChh
Q 015080 145 AFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPY 220 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y 220 (413)
++|+|||+||...... ..++.+..+++|+.++..+++++++.+.+++|++||....-. ......|
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~~-----------~~~~~~y 149 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVLG-----------NPGQANY 149 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhcC-----------CCCchhh
Confidence 5899999999754322 223445678899999999999998878889999999654311 1225689
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeeccee
Q 015080 221 GKAKKMAEDIILDFSKNSDMAVMILRYFNVI 251 (413)
Q Consensus 221 ~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~ 251 (413)
+.+|.+.+.+++.+.. .+++++.+.||.+-
T Consensus 150 ~~sk~~~~~~~~~~~~-~~~~~~~~~~g~~~ 179 (180)
T smart00822 150 AAANAFLDALAAHRRA-RGLPATSINWGAWA 179 (180)
T ss_pred HHHHHHHHHHHHHHHh-cCCceEEEeecccc
Confidence 9999999999976654 78999999988764
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=143.24 Aligned_cols=173 Identities=20% Similarity=0.204 Sum_probs=129.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc------
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE------ 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~------ 143 (413)
|.++||||+.+||.-|+++|++. |.++++..+ ++.+.+.+.++.......++++++.|+++.+++.+++++
T Consensus 4 ksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~--r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg 81 (249)
T KOG1611|consen 4 KSVFITGANRGIGLGLVKELLKDKGIEVIIATA--RDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVG 81 (249)
T ss_pred ccEEEeccCcchhHHHHHHHhcCCCcEEEEEec--CChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhcc
Confidence 78999999999999999999977 666665543 333343444444433457999999999999998888766
Q ss_pred -CCCcEEEEcCcccCccCCcC-----ChHHHHHHHHHH----HHHHHHHHHHcCCC-----------EEEEeccceecCC
Q 015080 144 -NAFDAVMHFAAVAYVGESTL-----DPLKYYHNITSN----TLVVLESMARHGVD-----------TLIYSSTCATYGE 202 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~~~~-----~~~~~~~~n~~~----~~~ll~~~~~~~~~-----------~iV~~SS~~~~~~ 202 (413)
.++|++|||||+........ .....+++|+.+ ++.++|.+++...+ .||++||.+.-
T Consensus 82 ~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s-- 159 (249)
T KOG1611|consen 82 SDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGS-- 159 (249)
T ss_pred cCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccc--
Confidence 67999999999865432221 233468899888 67777777765444 79999996643
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 203 PEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 203 ~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
. ......+..+|..||.+...+.++++-+ .++-++.++||+|-..
T Consensus 160 ~------~~~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TD 207 (249)
T KOG1611|consen 160 I------GGFRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTD 207 (249)
T ss_pred c------CCCCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcC
Confidence 1 1123445789999999999999998876 5788899999998753
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=160.23 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=109.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
+++ |+|+||||+|+||++++++|+++|++|++++|+.. +..+.... ....+..+.+|++|++++.+.+ .++
T Consensus 176 l~g-K~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~---~l~~~~~~---~~~~v~~v~~Dvsd~~~v~~~l--~~I 246 (406)
T PRK07424 176 LKG-KTVAVTGASGTLGQALLKELHQQGAKVVALTSNSD---KITLEING---EDLPVKTLHWQVGQEAALAELL--EKV 246 (406)
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHhh---cCCCeEEEEeeCCCHHHHHHHh--CCC
Confidence 345 89999999999999999999999999999886432 22222211 1234678899999999999888 689
Q ss_pred cEEEEcCcccCcc-CCcCChHHHHHHHHHHHHHHHHHH----HHcCC----CEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 147 DAVMHFAAVAYVG-ESTLDPLKYYHNITSNTLVVLESM----ARHGV----DTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 147 dvvi~~Ag~~~~~-~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~----~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
|++|||||+.... ...++.+..+++|+.++.++++++ ++.+. +.+|++|++.. . + ...
T Consensus 247 DiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~-~-----------~-~~~ 313 (406)
T PRK07424 247 DILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEV-N-----------P-AFS 313 (406)
T ss_pred CEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccccc-c-----------C-CCc
Confidence 9999999975432 223345668999999966666554 44331 24566654221 1 1 113
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCCcEEEEeecc
Q 015080 218 NPYGKAKKMAEDIILDFSKNSDMAVMILRYFN 249 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~ 249 (413)
..|++||++.+.+......+.++.+..+.||.
T Consensus 314 ~~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~gp 345 (406)
T PRK07424 314 PLYELSKRALGDLVTLRRLDAPCVVRKLILGP 345 (406)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 46999999999986433333555555555543
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-17 Score=148.50 Aligned_cols=214 Identities=16% Similarity=0.142 Sum_probs=147.9
Q ss_pred cCC--ChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc------CCCcE
Q 015080 77 GGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE------NAFDA 148 (413)
Q Consensus 77 Gas--G~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~------~~~dv 148 (413)
|++ ++||.++|++|+++|++|++++|+..+.....+.+.+.. ...++.+|+++++++++++++ .++|+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~----~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEY----GAEVIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHT----TSEEEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHc----CCceEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 566 999999999999999999999876554333333333332 234699999999999988765 68999
Q ss_pred EEEcCcccCc----cCCc----CChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 149 VMHFAAVAYV----GEST----LDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 149 vi~~Ag~~~~----~~~~----~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
||||+|.... .+.. +.....+++|+.+...+++++ ++. +++|++||...... ...
T Consensus 77 lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gsii~iss~~~~~~-----------~~~ 143 (241)
T PF13561_consen 77 LVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKG--GSIINISSIAAQRP-----------MPG 143 (241)
T ss_dssp EEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHE--EEEEEEEEGGGTSB-----------STT
T ss_pred EEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCcccccchhhccc-----------Ccc
Confidence 9999997654 2222 233446777888855544444 443 68999999765432 233
Q ss_pred CChhHHHHHHHHHHHHHHHhh----CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 217 INPYGKAKKMAEDIILDFSKN----SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
...|+.+|++.+.+++.++.+ +||++++|.||.+-.+.... ....+.+........|
T Consensus 144 ~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~-------------~~~~~~~~~~~~~~~p------ 204 (241)
T PF13561_consen 144 YSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTER-------------IPGNEEFLEELKKRIP------ 204 (241)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHH-------------HHTHHHHHHHHHHHST------
T ss_pred chhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhc-------------cccccchhhhhhhhhc------
Confidence 668999999999999999877 48999999999988652100 0011233333333222
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCC
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTG 336 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~ 336 (413)
...+...+|+|+++++++... ..-.|+++.+.+|
T Consensus 205 ----------l~r~~~~~evA~~v~fL~s~~a~~itG~~i~vDGG 239 (241)
T PF13561_consen 205 ----------LGRLGTPEEVANAVLFLASDAASYITGQVIPVDGG 239 (241)
T ss_dssp ----------TSSHBEHHHHHHHHHHHHSGGGTTGTSEEEEESTT
T ss_pred ----------cCCCcCHHHHHHHHHHHhCccccCccCCeEEECCC
Confidence 123568999999999999854 2335578888665
|
... |
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=149.38 Aligned_cols=228 Identities=10% Similarity=-0.005 Sum_probs=135.4
Q ss_pred CCCCceEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEecCC------CCCchh--hhh-------------hhhhcCCCC
Q 015080 66 HEEGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLS------RGNIGA--VKV-------------LQELFPEPG 122 (413)
Q Consensus 66 ~~~~~k~vlITGas--G~IG~~la~~L~~~G~~V~~~~r~~------~~~~~~--~~~-------------~~~~~~~~~ 122 (413)
.+++ |+++||||+ ++||.++|+.|+++|++|++.++.. +..+.. ... +..+...-.
T Consensus 5 ~~~g-k~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~ 83 (299)
T PRK06300 5 DLTG-KIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFD 83 (299)
T ss_pred CCCC-CEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcC
Confidence 4567 999999995 9999999999999999999876431 010000 000 000000001
Q ss_pred ceEEEEccCCC--------HHHHHHHhhc-----CCCcEEEEcCcccC--ccC----CcCChHHHHHHHHHHHHHHH---
Q 015080 123 RLQFIYADLGD--------AKAVNKFFSE-----NAFDAVMHFAAVAY--VGE----STLDPLKYYHNITSNTLVVL--- 180 (413)
Q Consensus 123 ~~~~~~~Dl~d--------~~~~~~~~~~-----~~~dvvi~~Ag~~~--~~~----~~~~~~~~~~~n~~~~~~ll--- 180 (413)
..+-+.+|+++ .++++++++. +++|+||||||... ... ..++.+..+++|+.+..+++
T Consensus 84 ~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~ 163 (299)
T PRK06300 84 TPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHF 163 (299)
T ss_pred CCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 22233333333 1234444433 67999999998642 111 22344557889999955544
Q ss_pred -HHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhh----CCCcEEEEeecceecCC
Q 015080 181 -ESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPIN-PYGKAKKMAEDIILDFSKN----SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 181 -~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~-~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~G~~ 254 (413)
+.|++ .+++|++||....-.. .... .|+.||++.+.+++.++.+ +||+++.|.||.+-.+.
T Consensus 164 ~p~m~~--~G~ii~iss~~~~~~~-----------p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~~ 230 (299)
T PRK06300 164 GPIMNP--GGSTISLTYLASMRAV-----------PGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASRA 230 (299)
T ss_pred HHHhhc--CCeEEEEeehhhcCcC-----------CCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccChh
Confidence 55543 3589999985543111 1133 7999999999999999876 38999999999987653
Q ss_pred CCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEe
Q 015080 255 PEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNV 333 (413)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni 333 (413)
... . ...+..........+ ...+...+|+++++++++... ....++++.+
T Consensus 231 ~~~-~------------~~~~~~~~~~~~~~p----------------~~r~~~peevA~~v~~L~s~~~~~itG~~i~v 281 (299)
T PRK06300 231 GKA-I------------GFIERMVDYYQDWAP----------------LPEPMEAEQVGAAAAFLVSPLASAITGETLYV 281 (299)
T ss_pred hhc-c------------cccHHHHHHHHhcCC----------------CCCCcCHHHHHHHHHHHhCccccCCCCCEEEE
Confidence 110 0 000111111111111 113467899999999988643 2234467777
Q ss_pred cCC
Q 015080 334 GTG 336 (413)
Q Consensus 334 ~~~ 336 (413)
.++
T Consensus 282 dGG 284 (299)
T PRK06300 282 DHG 284 (299)
T ss_pred CCC
Confidence 655
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=146.40 Aligned_cols=166 Identities=16% Similarity=0.160 Sum_probs=121.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCC--chhhhhhhhhcCCC-CceEEEEccCCC-HHHHHHHhhc---
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN--IGAVKVLQELFPEP-GRLQFIYADLGD-AKAVNKFFSE--- 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~-~~~~~~~~Dl~d-~~~~~~~~~~--- 143 (413)
|+||||||+++||.++|+.|++.|++|+++.+..... +...+... ... ..+.+..+|+++ .++++.+++.
T Consensus 6 ~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~~ 82 (251)
T COG1028 6 KVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK---EAGGGRAAAVAADVSDDEESVEALVAAAEE 82 (251)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH---hcCCCcEEEEEecCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999988887654431 22222222 111 257788899998 8888777655
Q ss_pred --CCCcEEEEcCcccCcc-C----CcCChHHHHHHHHHHHHHHHH----HHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVG-E----STLDPLKYYHNITSNTLVVLE----SMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~-~----~~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
+++|++|||||+.... . ..+..+..+++|+.+...+.. .++++ +||++||.... ....
T Consensus 83 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~---~Iv~isS~~~~-~~~~------- 151 (251)
T COG1028 83 EFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQ---RIVNISSVAGL-GGPP------- 151 (251)
T ss_pred HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhC---eEEEECCchhc-CCCC-------
Confidence 5699999999986431 1 223455678899998555444 33322 99999997654 3221
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
...+|+.||++.+.+++.++.+ +|++++.+.||.+-.+
T Consensus 152 ---~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~ 192 (251)
T COG1028 152 ---GQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTP 192 (251)
T ss_pred ---CcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCc
Confidence 0478999999999999999866 6899999999955533
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-17 Score=137.31 Aligned_cols=224 Identities=17% Similarity=0.173 Sum_probs=154.1
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-C
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-N 144 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~ 144 (413)
.+.| +.|++||+.-+||++++.+|++.|++|+.+.|.. ..+....++. +.-++.+.+|+++.+.+.+++.. .
T Consensus 4 ~laG-~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~---a~L~sLV~e~---p~~I~Pi~~Dls~wea~~~~l~~v~ 76 (245)
T KOG1207|consen 4 SLAG-VIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNE---ANLLSLVKET---PSLIIPIVGDLSAWEALFKLLVPVF 76 (245)
T ss_pred cccc-eEEEeecccccccHHHHHHHHhcCCEEEEEecCH---HHHHHHHhhC---CcceeeeEecccHHHHHHHhhcccC
Confidence 3557 9999999999999999999999999999997643 3333333322 34588999999999999888855 5
Q ss_pred CCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHH----HHHcC-CCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLES----MARHG-VDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
.+|.++||||+..-.+ ..++.+..|++|+.+.-++.+. +..+. .+.||++||.+..- +..
T Consensus 77 pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R-----------~~~ 145 (245)
T KOG1207|consen 77 PIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIR-----------PLD 145 (245)
T ss_pred chhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhccc-----------ccC
Confidence 6899999999864433 2344455677888874444333 44443 46799999966432 344
Q ss_pred CCChhHHHHHHHHHHHHHHHhhC---CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 216 PINPYGKAKKMAEDIILDFSKNS---DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
..+.|+++|++.+.+++.++.|. .|++..+.|..|....-.-.+....+ ...+.+. +++
T Consensus 146 nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWSDP~K-------------~k~mL~r---iPl-- 207 (245)
T KOG1207|consen 146 NHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWSDPDK-------------KKKMLDR---IPL-- 207 (245)
T ss_pred CceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccCCchh-------------ccchhhh---Cch--
Confidence 47889999999999999999984 59999999999986542222111111 0111111 222
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhcCCC-CccEEEecCC
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK-KVGIYNVGTG 336 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~-~~~~yni~~~ 336 (413)
-.|.-|+.+++|+.+++.....- .+.+..+-+|
T Consensus 208 -----------~rFaEV~eVVnA~lfLLSd~ssmttGstlpveGG 241 (245)
T KOG1207|consen 208 -----------KRFAEVDEVVNAVLFLLSDNSSMTTGSTLPVEGG 241 (245)
T ss_pred -----------hhhhHHHHHHhhheeeeecCcCcccCceeeecCC
Confidence 24778999999999988754432 2234444433
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-16 Score=141.79 Aligned_cols=174 Identities=14% Similarity=0.153 Sum_probs=139.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHH----HHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKA----VNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~----~~~~~~~~~~ 146 (413)
+-++|||||.+||++.|++|+++|.+|++++|+..+.+++++.+.+... -.+.++.+|.++.+. +.+.+...++
T Consensus 50 ~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~--vev~~i~~Dft~~~~~ye~i~~~l~~~~V 127 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYK--VEVRIIAIDFTKGDEVYEKLLEKLAGLDV 127 (312)
T ss_pred CEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhC--cEEEEEEEecCCCchhHHHHHHHhcCCce
Confidence 7899999999999999999999999999999988888888877776543 468889999987665 5566655788
Q ss_pred cEEEEcCcccC--ccCCcCChH----HHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 147 DAVMHFAAVAY--VGESTLDPL----KYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 147 dvvi~~Ag~~~--~~~~~~~~~----~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
.++|||+|+.. |....+.++ ..+.+|+.+ ++.+++.|.+.+.+.||++||.+..- |.+-
T Consensus 128 gILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~-----------p~p~ 196 (312)
T KOG1014|consen 128 GILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLI-----------PTPL 196 (312)
T ss_pred EEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccc-----------cChh
Confidence 99999999875 222222233 234467766 77799999998889999999966532 3333
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCC
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEG 257 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~ 257 (413)
.+.|+.||...+.+..++.+| .||.+..+-|..|-++....
T Consensus 197 ~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm~~~ 240 (312)
T KOG1014|consen 197 LSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKMAKY 240 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheecccccc
Confidence 788999999999999999988 68999999999999886543
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-15 Score=138.70 Aligned_cols=225 Identities=17% Similarity=0.194 Sum_probs=163.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
++||||||||++|++++++|+++|++|++..|+........ ..+++...|+.++..+...+ .+.|.++
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~----------~~v~~~~~d~~~~~~l~~a~--~G~~~~~ 68 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA----------GGVEVVLGDLRDPKSLVAGA--KGVDGVL 68 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc----------CCcEEEEeccCCHhHHHHHh--ccccEEE
Confidence 46999999999999999999999999999987554332211 47899999999999999999 7899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
++.+... +. . ...........+..+++. .+..+++++|+...-. .....|..+|..+|..
T Consensus 69 ~i~~~~~-~~----~-~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~~~-------------~~~~~~~~~~~~~e~~ 128 (275)
T COG0702 69 LISGLLD-GS----D-AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGADA-------------ASPSALARAKAAVEAA 128 (275)
T ss_pred EEecccc-cc----c-chhHHHHHHHHHHHHHhc-CCceEEEEeccCCCCC-------------CCccHHHHHHHHHHHH
Confidence 9987653 21 1 122222333333333333 3467888888855421 2256799999999999
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHH
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~ 310 (413)
+.+ .|+..+++||...|.... ... .......+.+ +.. .+....+++.++
T Consensus 129 l~~----sg~~~t~lr~~~~~~~~~----------------~~~--~~~~~~~~~~-~~~--------~~~~~~~~i~~~ 177 (275)
T COG0702 129 LRS----SGIPYTTLRRAAFYLGAG----------------AAF--IEAAEAAGLP-VIP--------RGIGRLSPIAVD 177 (275)
T ss_pred HHh----cCCCeEEEecCeeeeccc----------------hhH--HHHHHhhCCc-eec--------CCCCceeeeEHH
Confidence 988 899999999776665331 111 2223333333 221 222367999999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeE
Q 015080 311 DLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVI 359 (413)
Q Consensus 311 Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~ 359 (413)
|++.++..++..+.. .+++|.+++++..+..++.+.+.+..|++....
T Consensus 178 d~a~~~~~~l~~~~~-~~~~~~l~g~~~~~~~~~~~~l~~~~gr~~~~~ 225 (275)
T COG0702 178 DVAEALAAALDAPAT-AGRTYELAGPEALTLAELASGLDYTIGRPVGLI 225 (275)
T ss_pred HHHHHHHHHhcCCcc-cCcEEEccCCceecHHHHHHHHHHHhCCcceee
Confidence 999999999987654 347999999989999999999999999988874
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.7e-16 Score=141.65 Aligned_cols=151 Identities=19% Similarity=0.087 Sum_probs=115.9
Q ss_pred HHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--CCCcEEEEcCcccCccCCcC
Q 015080 86 AALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--NAFDAVMHFAAVAYVGESTL 163 (413)
Q Consensus 86 la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~~~dvvi~~Ag~~~~~~~~~ 163 (413)
++++|+++|++|++++|+....+ ...++++|++|.+++++++++ .++|+||||||+.. ..
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~~--------------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~~ 62 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGMT--------------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----TA 62 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchhh--------------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----CC
Confidence 57899999999999987543210 134678999999999998876 47999999999753 23
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCC----------------CCCCCCChhHHHHH
Q 015080 164 DPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEE----------------TPQAPINPYGKAKK 225 (413)
Q Consensus 164 ~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~----------------~~~~~~~~Y~~sK~ 225 (413)
..+..+++|+.++..+++.+... ..++||++||.+.|+.....+..+. .+..+..+|+.||+
T Consensus 63 ~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 142 (241)
T PRK12428 63 PVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKE 142 (241)
T ss_pred CHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHH
Confidence 57788999999988888887653 3479999999988863321111111 24445688999999
Q ss_pred HHHHHHHHHH-hh---CCCcEEEEeecceecCC
Q 015080 226 MAEDIILDFS-KN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 226 ~~e~~~~~~~-~~---~gi~~~~lrp~~v~G~~ 254 (413)
+.+.+++.++ .+ .|+++++|+||.+.++.
T Consensus 143 a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~ 175 (241)
T PRK12428 143 ALILWTMRQAQPWFGARGIRVNCVAPGPVFTPI 175 (241)
T ss_pred HHHHHHHHHHHHhhhccCeEEEEeecCCccCcc
Confidence 9999999988 44 68999999999998874
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-15 Score=128.77 Aligned_cols=165 Identities=18% Similarity=0.250 Sum_probs=119.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
++|||||+|+||..+++.|+++|. +|+++.|......+..+.++++...+..+.++.+|++|++++.++++. .+
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 689999999999999999999976 799998874334444455666555567899999999999999999876 47
Q ss_pred CcEEEEcCcccCccCCcC----ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccee-cCCCCCCCCCCCCCCCCCChh
Q 015080 146 FDAVMHFAAVAYVGESTL----DPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCAT-YGEPEKMPITEETPQAPINPY 220 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~----~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~-~~~~~~~~~~e~~~~~~~~~Y 220 (413)
++.|||+||........+ .....+..-+.++.++.+++.......+|.+||... +|... ...|
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~~g------------q~~Y 149 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGGPG------------QSAY 149 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT-TT------------BHHH
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccCcc------------hHhH
Confidence 899999999864433222 233356678888999999998888999999999664 45433 6789
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeecc
Q 015080 221 GKAKKMAEDIILDFSKNSDMAVMILRYFN 249 (413)
Q Consensus 221 ~~sK~~~e~~~~~~~~~~gi~~~~lrp~~ 249 (413)
+..-...+.+++.... .|.++++|..+.
T Consensus 150 aaAN~~lda~a~~~~~-~g~~~~sI~wg~ 177 (181)
T PF08659_consen 150 AAANAFLDALARQRRS-RGLPAVSINWGA 177 (181)
T ss_dssp HHHHHHHHHHHHHHHH-TTSEEEEEEE-E
T ss_pred HHHHHHHHHHHHHHHh-CCCCEEEEEccc
Confidence 9999999999887655 689988887664
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-15 Score=169.33 Aligned_cols=173 Identities=17% Similarity=0.166 Sum_probs=134.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCC-------------------------------------------
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRG------------------------------------------- 106 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~------------------------------------------- 106 (413)
+++|||||+++||.+++++|+++ |++|++++|+...
T Consensus 1998 ~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~~~ 2077 (2582)
T TIGR02813 1998 DVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRPVL 2077 (2582)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccccc
Confidence 89999999999999999999998 6999999986210
Q ss_pred -CchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHH
Q 015080 107 -NIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTL 177 (413)
Q Consensus 107 -~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~ 177 (413)
..+..+.+..+...+..+.++.||++|.+++++++++ .++|+||||||+..... ..++.+..+++|+.|+.
T Consensus 2078 ~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G~~ 2157 (2582)
T TIGR02813 2078 SSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDGLL 2157 (2582)
T ss_pred hhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 0011112223333356789999999999999888765 46999999999864332 23445567999999999
Q ss_pred HHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhC-CCcEEEEeecceecCC
Q 015080 178 VVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNS-DMAVMILRYFNVIGSD 254 (413)
Q Consensus 178 ~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-gi~~~~lrp~~v~G~~ 254 (413)
++++++.....++||++||...+-...+ ...|+.+|.+.+.+++.++.+. +++++++.||.+-|+.
T Consensus 2158 ~Ll~al~~~~~~~IV~~SSvag~~G~~g-----------qs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~wdtgm 2224 (2582)
T TIGR02813 2158 SLLAALNAENIKLLALFSSAAGFYGNTG-----------QSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPWDGGM 2224 (2582)
T ss_pred HHHHHHHHhCCCeEEEEechhhcCCCCC-----------cHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCeecCCc
Confidence 9999998877789999999765422222 6789999999999999888774 6899999999887653
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.2e-16 Score=126.85 Aligned_cols=215 Identities=17% Similarity=0.171 Sum_probs=156.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
-..|||||.+++|.+.++.|+++|+.|+++|....+.++.++.+ +.++.|...|++.+++++.++.. ++
T Consensus 10 lvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakel------g~~~vf~padvtsekdv~aala~ak~kfgr 83 (260)
T KOG1199|consen 10 LVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKEL------GGKVVFTPADVTSEKDVRAALAKAKAKFGR 83 (260)
T ss_pred eeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHh------CCceEEeccccCcHHHHHHHHHHHHhhccc
Confidence 78999999999999999999999999999998666666555554 57899999999999999988866 67
Q ss_pred CcEEEEcCcccCccC----------CcCChHHHHHHHHHHHHHHHHHHH----Hc----C--CCEEEEeccceecCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----------STLDPLKYYHNITSNTLVVLESMA----RH----G--VDTLIYSSTCATYGEPEK 205 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----------~~~~~~~~~~~n~~~~~~ll~~~~----~~----~--~~~iV~~SS~~~~~~~~~ 205 (413)
.|.++||||+...-. ..++....+++|+.||.++++.-. ++ + -+.||++.|.+.|...-+
T Consensus 84 ld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdgq~g 163 (260)
T KOG1199|consen 84 LDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQTG 163 (260)
T ss_pred eeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecCccc
Confidence 999999999753211 123344467799999988876543 11 1 346889999888866554
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHh
Q 015080 206 MPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAAR 282 (413)
Q Consensus 206 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (413)
..+|++||.+.-.++.-+++. .||+++.+-||..-.|-.. .+.......+.
T Consensus 164 -----------qaaysaskgaivgmtlpiardla~~gir~~tiapglf~tplls---------------slpekv~~fla 217 (260)
T KOG1199|consen 164 -----------QAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPLLS---------------SLPEKVKSFLA 217 (260)
T ss_pred -----------hhhhhcccCceEeeechhhhhcccCceEEEeecccccCChhhh---------------hhhHHHHHHHH
Confidence 789999999998877766665 5899999999886555321 44445555555
Q ss_pred ccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEe
Q 015080 283 GIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNV 333 (413)
Q Consensus 283 ~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni 333 (413)
+..| .+ -.+-|....+..+-.+++++-- ++++.-+
T Consensus 218 ~~ip-fp--------------srlg~p~eyahlvqaiienp~l-ngevir~ 252 (260)
T KOG1199|consen 218 QLIP-FP--------------SRLGHPHEYAHLVQAIIENPYL-NGEVIRF 252 (260)
T ss_pred HhCC-Cc--------------hhcCChHHHHHHHHHHHhCccc-CCeEEEe
Confidence 5443 11 1245666677666667776544 3456655
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-13 Score=114.62 Aligned_cols=209 Identities=16% Similarity=0.145 Sum_probs=146.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|.|.||||-+|+.|+++..++||+|+++.|++.+.... ..+.+++.|+.|++++.+.+ .+.|+||
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-----------~~~~i~q~Difd~~~~a~~l--~g~DaVI 67 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-----------QGVTILQKDIFDLTSLASDL--AGHDAVI 67 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-----------ccceeecccccChhhhHhhh--cCCceEE
Confidence 5688999999999999999999999999999876544311 46778999999999998888 7999999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
..-+...+ +.+. ........++..++..++.|++.++.++..--.++ ..-.+.|..|...|..++..+|.
T Consensus 68 sA~~~~~~-----~~~~---~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g-~rLvD~p~fP~ey~~~A~~~ae~- 137 (211)
T COG2910 68 SAFGAGAS-----DNDE---LHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEG-TRLVDTPDFPAEYKPEALAQAEF- 137 (211)
T ss_pred EeccCCCC-----ChhH---HHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCC-ceeecCCCCchhHHHHHHHHHHH-
Confidence 88764321 1111 12233677888888889999999988654322222 22234455666667777777764
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHH
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~ 310 (413)
+..+..+.+++||-+.|...|-|+++.. . ..+.|+.+-.+. .--++|+..
T Consensus 138 L~~Lr~~~~l~WTfvSPaa~f~PGerTg-------------~---------------yrlggD~ll~n~--~G~SrIS~a 187 (211)
T COG2910 138 LDSLRAEKSLDWTFVSPAAFFEPGERTG-------------N---------------YRLGGDQLLVNA--KGESRISYA 187 (211)
T ss_pred HHHHhhccCcceEEeCcHHhcCCccccC-------------c---------------eEeccceEEEcC--CCceeeeHH
Confidence 5566666679999999999999875321 0 111111111111 113679999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEe
Q 015080 311 DLVDAHVKALERAQPKKVGIYNV 333 (413)
Q Consensus 311 Dva~a~~~~~~~~~~~~~~~yni 333 (413)
|.|-|++.-++++...+ +.|-+
T Consensus 188 DYAiA~lDe~E~~~h~r-qRftv 209 (211)
T COG2910 188 DYAIAVLDELEKPQHIR-QRFTV 209 (211)
T ss_pred HHHHHHHHHHhcccccc-eeeee
Confidence 99999999999887754 55554
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-14 Score=124.90 Aligned_cols=274 Identities=18% Similarity=0.131 Sum_probs=180.5
Q ss_pred eEEEEEcCCChHHHHHHH-----HHHHCC----CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHH-HHHHH
Q 015080 71 THVLVTGGAGYIGSHAAL-----RLLKDS----YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAK-AVNKF 140 (413)
Q Consensus 71 k~vlITGasG~IG~~la~-----~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~~ 140 (413)
++.++-+++|+|+..|.- ++-..+ |.|++++|.+... ++.+-+.|..-.. ++.+.
T Consensus 13 r~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~---------------ritw~el~~~Gip~sc~a~ 77 (315)
T KOG3019|consen 13 RDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKA---------------RITWPELDFPGIPISCVAG 77 (315)
T ss_pred ccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCc---------------ccccchhcCCCCceehHHH
Confidence 567888999999988876 333334 7899998765432 2333333322211 11111
Q ss_pred hhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHH-----HHHHHHHHHHcC--CCEEEEeccceecCCCCCCCCCCCCC
Q 015080 141 FSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN-----TLVVLESMARHG--VDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 141 ~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~-----~~~ll~~~~~~~--~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
+..+.+|+.... ......++-|+.| |..+.++..++. .+..|.+|..++|-......++|+.+
T Consensus 78 -----vna~g~n~l~P~-----rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~~~ 147 (315)
T KOG3019|consen 78 -----VNAVGNNALLPI-----RRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEKIV 147 (315)
T ss_pred -----HhhhhhhccCch-----hhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEeccccccccccccc
Confidence 233344443211 1222345555555 777888887763 45799999999998777777888888
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
....+..+.--...|..++.-.+ .++++++|.|.|.|.+- ..+..++-..+-+.
T Consensus 148 ~qgfd~~srL~l~WE~aA~~~~~--~~r~~~iR~GvVlG~gG----------------Ga~~~M~lpF~~g~-------- 201 (315)
T KOG3019|consen 148 HQGFDILSRLCLEWEGAALKANK--DVRVALIRIGVVLGKGG----------------GALAMMILPFQMGA-------- 201 (315)
T ss_pred cCChHHHHHHHHHHHHHhhccCc--ceeEEEEEEeEEEecCC----------------cchhhhhhhhhhcc--------
Confidence 87777776666666776665443 38999999999999862 22222222221111
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCC-----CC-C
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRR-----PG-D 367 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-----~~-~ 367 (413)
.-..++|.+++.|||++|++..+..+++++.-. ++.|-..+++.+..|+++.+.++++++.-+.. |.. .+ +
T Consensus 202 GGPlGsG~Q~fpWIHv~DL~~li~~ale~~~v~--GViNgvAP~~~~n~Ef~q~lg~aL~Rp~~~pv-P~fvvqA~fG~e 278 (315)
T KOG3019|consen 202 GGPLGSGQQWFPWIHVDDLVNLIYEALENPSVK--GVINGVAPNPVRNGEFCQQLGSALSRPSWLPV-PDFVVQALFGPE 278 (315)
T ss_pred CCcCCCCCeeeeeeehHHHHHHHHHHHhcCCCC--ceecccCCCccchHHHHHHHHHHhCCCcccCC-cHHHHHHHhCcc
Confidence 112238999999999999999999999986654 59999999999999999999999997754321 110 00 1
Q ss_pred ccccccC-----HHHHHHhcCcccccccHHHHHHHHH
Q 015080 368 YAEVYSD-----PTKIRLELNWTAKYTNLQESLEIAW 399 (413)
Q Consensus 368 ~~~~~~d-----~~k~~~~lG~~p~~~~~~e~l~~~~ 399 (413)
.....++ ..|+. ++||+.+|+.+++++++.+
T Consensus 279 rA~~vLeGqKV~Pqral-~~Gf~f~yp~vk~Al~~i~ 314 (315)
T KOG3019|consen 279 RATVVLEGQKVLPQRAL-ELGFEFKYPYVKDALRAIM 314 (315)
T ss_pred ceeEEeeCCcccchhHh-hcCceeechHHHHHHHHHh
Confidence 2223333 34444 6899999999999998764
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.5e-13 Score=113.27 Aligned_cols=129 Identities=17% Similarity=0.153 Sum_probs=88.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |+++||||+++||.++++.|++.|++|++++|.....+...+.+. ..+..+.++.+|+++.+++.+++++
T Consensus 14 l~g-k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~v~~~v~~~~~ 89 (169)
T PRK06720 14 LAG-KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEIT---NLGGEALFVSYDMEKQGDWQRVISITLN 89 (169)
T ss_pred cCC-CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 456 899999999999999999999999999999875433322223332 2234577889999999998886643
Q ss_pred --CCCcEEEEcCcccCccC-CcC-ChHHHHHHHHH----HHHHHHHHHHHc-------CCCEEEEecccee
Q 015080 144 --NAFDAVMHFAAVAYVGE-STL-DPLKYYHNITS----NTLVVLESMARH-------GVDTLIYSSTCAT 199 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~-~~~-~~~~~~~~n~~----~~~~ll~~~~~~-------~~~~iV~~SS~~~ 199 (413)
+++|++|||||+..... .++ ..+..-.+|+. -++.+...+.+. +.+|+..+||.+.
T Consensus 90 ~~G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (169)
T PRK06720 90 AFSRIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQ 160 (169)
T ss_pred HcCCCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccc
Confidence 57999999999865332 222 21122223333 356666665543 3568888888554
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-13 Score=116.87 Aligned_cols=213 Identities=14% Similarity=0.098 Sum_probs=137.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
+.+|+||+|.+||..++..+.+++-+...........+ .+.++.. .+.......+|++....+.++.+. ..
T Consensus 7 ~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~--~~~L~v~--~gd~~v~~~g~~~e~~~l~al~e~~r~k~gk 82 (253)
T KOG1204|consen 7 KVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE--LEGLKVA--YGDDFVHVVGDITEEQLLGALREAPRKKGGK 82 (253)
T ss_pred eEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc--ccceEEE--ecCCcceechHHHHHHHHHHHHhhhhhcCCc
Confidence 88999999999999999999998876544332211111 1111111 123445566777776655554433 56
Q ss_pred CcEEEEcCcccCccC-------CcCChHHHHHHHHHHHHHH----HHHHHHcC-CCEEEEeccceecCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE-------STLDPLKYYHNITSNTLVV----LESMARHG-VDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~-------~~~~~~~~~~~n~~~~~~l----l~~~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.|+||||||...+-. ..+....+|+.|+.+...+ ++.+++.. .+-+|++||.+.. .|
T Consensus 83 r~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav-----------~p 151 (253)
T KOG1204|consen 83 RDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAV-----------RP 151 (253)
T ss_pred eeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhh-----------cc
Confidence 899999999754311 2233455789999985554 44444442 4689999996653 25
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh-C-CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN-S-DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~-~-gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
...+.+|+.+|++.+.+.+.++.| + ++++..++||.|-.+...-.. .-+.+.+......++.+.
T Consensus 152 ~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq~~ir---------~~~~~~p~~l~~f~el~~----- 217 (253)
T KOG1204|consen 152 FSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQVCIR---------ETSRMTPADLKMFKELKE----- 217 (253)
T ss_pred ccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchhHHHHh---------hccCCCHHHHHHHHHHHh-----
Confidence 556889999999999999999877 3 899999999998766421100 001234444444443222
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhc
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERA 323 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 323 (413)
.-.++...+-++.+..++++.
T Consensus 218 -----------~~~ll~~~~~a~~l~~L~e~~ 238 (253)
T KOG1204|consen 218 -----------SGQLLDPQVTAKVLAKLLEKG 238 (253)
T ss_pred -----------cCCcCChhhHHHHHHHHHHhc
Confidence 124677888899888888865
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=113.47 Aligned_cols=181 Identities=11% Similarity=0.168 Sum_probs=129.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-----EEEEEecCCCCCchhhhhhhhhcCC-CCceEEEEccCCCHHHHHHHhhc-
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-----RVTIVDNLSRGNIGAVKVLQELFPE-PGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-----~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
|.+||||++++||.+|+.+|++... ++++.+|+.++.+++-..+++..+. ..+++++..|+++..++.++..+
T Consensus 4 KvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~di 83 (341)
T KOG1478|consen 4 KVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASKDI 83 (341)
T ss_pred eEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHHHH
Confidence 8899999999999999999998854 4666777777777666666665553 35788999999999998877755
Q ss_pred ----CCCcEEEEcCcccCccC-------------------------------CcCChHHHHHHHHHHHHHHHHHHH----
Q 015080 144 ----NAFDAVMHFAAVAYVGE-------------------------------STLDPLKYYHNITSNTLVVLESMA---- 184 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~-------------------------------~~~~~~~~~~~n~~~~~~ll~~~~---- 184 (413)
.++|.|+-|||++..+. +.++-...++.|+.|.-.++..+.
T Consensus 84 ~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pll~ 163 (341)
T KOG1478|consen 84 KQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPLLC 163 (341)
T ss_pred HHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhHhh
Confidence 67999999999875432 123445578899999666555443
Q ss_pred HcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 185 RHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 185 ~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
......+|++||...--..- ...+-.......+|..||.+.+.+-.+..+. .|+.-.++.||.....
T Consensus 164 ~~~~~~lvwtSS~~a~kk~l--sleD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~tt~ 233 (341)
T KOG1478|consen 164 HSDNPQLVWTSSRMARKKNL--SLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTTN 233 (341)
T ss_pred cCCCCeEEEEeecccccccC--CHHHHhhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceeecc
Confidence 34455999999955421110 0111112344678999999999887776655 4677788888876653
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.5e-11 Score=113.36 Aligned_cols=164 Identities=21% Similarity=0.133 Sum_probs=108.7
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHH-HHhhcC--CC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVN-KFFSEN--AF 146 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~-~~~~~~--~~ 146 (413)
+++|||+||||.+|+-+++.|+++|+.|+++.|+......... ..........+..|.....++. .+.+.. ..
T Consensus 79 ~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~----~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~ 154 (411)
T KOG1203|consen 79 PTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG----VFFVDLGLQNVEADVVTAIDILKKLVEAVPKGV 154 (411)
T ss_pred CCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc----ccccccccceeeeccccccchhhhhhhhccccc
Confidence 4789999999999999999999999999998765544433332 1111234555566655554443 333222 24
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCC---CChhHHH
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAP---INPYGKA 223 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~---~~~Y~~s 223 (413)
.+++-++|-... .+ +...-+.+...|+++++++|+..+++|+|++||.+.-... .+++. ...+..+
T Consensus 155 ~~v~~~~ggrp~--~e-d~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~~~~--------~~~~~~~~~~~~~~~ 223 (411)
T KOG1203|consen 155 VIVIKGAGGRPE--EE-DIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGTKFN--------QPPNILLLNGLVLKA 223 (411)
T ss_pred eeEEecccCCCC--cc-cCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCcccC--------CCchhhhhhhhhhHH
Confidence 466666553221 11 1223355778999999999999999999999886542111 11111 2234588
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeecceec
Q 015080 224 KKMAEDIILDFSKNSDMAVMILRYFNVIG 252 (413)
Q Consensus 224 K~~~e~~~~~~~~~~gi~~~~lrp~~v~G 252 (413)
|..+|.++++ .|++.++|||+...-
T Consensus 224 k~~~e~~~~~----Sgl~ytiIR~g~~~~ 248 (411)
T KOG1203|consen 224 KLKAEKFLQD----SGLPYTIIRPGGLEQ 248 (411)
T ss_pred HHhHHHHHHh----cCCCcEEEecccccc
Confidence 8888888876 899999999998664
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=100.49 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=120.6
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
||.++|.||||-.|+.+.+.+++.+- +|+++.|......++ ...+.....|....++..... .++|
T Consensus 18 ~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at----------~k~v~q~~vDf~Kl~~~a~~~--qg~d 85 (238)
T KOG4039|consen 18 NMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPAT----------DKVVAQVEVDFSKLSQLATNE--QGPD 85 (238)
T ss_pred ccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccc----------cceeeeEEechHHHHHHHhhh--cCCc
Confidence 48999999999999999999999975 898888754332221 356677778887777776666 7899
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHH
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMA 227 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~ 227 (413)
+.+.+-|..... ...+.++.+...-...+.+++++.|+++||.+||...- ++..-.|-..|-..
T Consensus 86 V~FcaLgTTRgk---aGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd-------------~sSrFlY~k~KGEv 149 (238)
T KOG4039|consen 86 VLFCALGTTRGK---AGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGAD-------------PSSRFLYMKMKGEV 149 (238)
T ss_pred eEEEeecccccc---cccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCC-------------cccceeeeeccchh
Confidence 999888865432 22344555666666778889999999999999996642 22345699999999
Q ss_pred HHHHHHHHhhCCCcEEEEeecceecCCCCCCCC
Q 015080 228 EDIILDFSKNSDMAVMILRYFNVIGSDPEGRLG 260 (413)
Q Consensus 228 e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~ 260 (413)
|.-+.++.= -+++++|||.+.|..++...|
T Consensus 150 E~~v~eL~F---~~~~i~RPG~ll~~R~esr~g 179 (238)
T KOG4039|consen 150 ERDVIELDF---KHIIILRPGPLLGERTESRQG 179 (238)
T ss_pred hhhhhhccc---cEEEEecCcceeccccccccc
Confidence 998887532 268899999999988765444
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.8e-10 Score=97.11 Aligned_cols=229 Identities=15% Similarity=0.111 Sum_probs=143.0
Q ss_pred CCCCceEEEEEcC--CChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 66 HEEGVTHVLVTGG--AGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 66 ~~~~~k~vlITGa--sG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
.++| |++||+|- ...|+..||+.|.++|+++....... ++.+.+.++...-....+++||+++.+++++++++
T Consensus 3 ~L~G-K~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e----~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~ 77 (259)
T COG0623 3 LLEG-KRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE----RLEKRVEELAEELGSDLVLPCDVTNDESIDALFAT 77 (259)
T ss_pred ccCC-ceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH----HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHH
Confidence 3567 99999997 56799999999999999998876543 44444444433223456789999999999988876
Q ss_pred -----CCCcEEEEcCcccCccC----CcCCh----HHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCC
Q 015080 144 -----NAFDAVMHFAAVAYVGE----STLDP----LKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~~~----~~~~~----~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~ 208 (413)
.++|.|||+-|...-.. ..+.. ...+++...+...+.++++.- +.+.+|.++=. |..
T Consensus 78 i~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYl---gs~----- 149 (259)
T COG0623 78 IKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYL---GSE----- 149 (259)
T ss_pred HHHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEec---cce-----
Confidence 78999999998654211 11122 223334444444455554432 34566665531 111
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
...+.++..+..|++.|.-++-++.+ .|+++..|..|.|=.-...+- +. ...++......-
T Consensus 150 ---r~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasgI------------~~-f~~~l~~~e~~a 213 (259)
T COG0623 150 ---RVVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASGI------------GD-FRKMLKENEANA 213 (259)
T ss_pred ---eecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhcc------------cc-HHHHHHHHHhhC
Confidence 12233778999999999999998887 579999888766543221110 01 222233322221
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
| .+.-+..+||++.-++++..-. ...+++.++.+|.++
T Consensus 214 P----------------l~r~vt~eeVG~tA~fLlSdLssgiTGei~yVD~G~~i 252 (259)
T COG0623 214 P----------------LRRNVTIEEVGNTAAFLLSDLSSGITGEIIYVDSGYHI 252 (259)
T ss_pred C----------------ccCCCCHHHhhhhHHHHhcchhcccccceEEEcCCcee
Confidence 2 2334678999987777666422 224578888777554
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-10 Score=107.31 Aligned_cols=172 Identities=15% Similarity=-0.009 Sum_probs=108.7
Q ss_pred ceEEEEEcCCChHHHH--HHHHHHHCCCEEEEEecCCCCCc------------hhhhhhhhhcCCCCceEEEEccCCCHH
Q 015080 70 VTHVLVTGGAGYIGSH--AALRLLKDSYRVTIVDNLSRGNI------------GAVKVLQELFPEPGRLQFIYADLGDAK 135 (413)
Q Consensus 70 ~k~vlITGasG~IG~~--la~~L~~~G~~V~~~~r~~~~~~------------~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 135 (413)
.|++|||||+++||.+ +++.| +.|++|+++++...... ...+.+.+ .+..+..+.||+++.+
T Consensus 41 gK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~---~G~~a~~i~~DVss~E 116 (398)
T PRK13656 41 PKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKA---AGLYAKSINGDAFSDE 116 (398)
T ss_pred CCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHh---cCCceEEEEcCCCCHH
Confidence 3999999999999999 89999 99999988875322111 12222222 2345678899999999
Q ss_pred HHHHHhhc-----CCCcEEEEcCcccCccC-----------------Cc------------------CCh-HHHHHHHHH
Q 015080 136 AVNKFFSE-----NAFDAVMHFAAVAYVGE-----------------ST------------------LDP-LKYYHNITS 174 (413)
Q Consensus 136 ~~~~~~~~-----~~~dvvi~~Ag~~~~~~-----------------~~------------------~~~-~~~~~~n~~ 174 (413)
+++++++. +++|+||||+|...... .. -.. +...-+.++
T Consensus 117 ~v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~Tv~vM 196 (398)
T PRK13656 117 IKQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIADTVKVM 196 (398)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHHHHHhh
Confidence 98887765 67999999999652211 00 001 111223445
Q ss_pred HHHH---HHHHHHHcC----CCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEE
Q 015080 175 NTLV---VLESMARHG----VDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMI 244 (413)
Q Consensus 175 ~~~~---ll~~~~~~~----~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~ 244 (413)
|... -++++...+ ..++|-.|... .... .|....+.-+.+|+..|..++.++.+ .|+++.+
T Consensus 197 ggedw~~Wi~al~~a~lla~g~~~va~TY~G---~~~t------~p~Y~~g~mG~AKa~LE~~~r~La~~L~~~giran~ 267 (398)
T PRK13656 197 GGEDWELWIDALDEAGVLAEGAKTVAYSYIG---PELT------HPIYWDGTIGKAKKDLDRTALALNEKLAAKGGDAYV 267 (398)
T ss_pred ccchHHHHHHHHHhcccccCCcEEEEEecCC---ccee------ecccCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEE
Confidence 5322 222222222 34666666522 1111 01111246799999999999999887 5789998
Q ss_pred EeecceecCC
Q 015080 245 LRYFNVIGSD 254 (413)
Q Consensus 245 lrp~~v~G~~ 254 (413)
+-++.+....
T Consensus 268 i~~g~~~T~A 277 (398)
T PRK13656 268 SVLKAVVTQA 277 (398)
T ss_pred EecCcccchh
Confidence 8888777654
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-10 Score=108.62 Aligned_cols=176 Identities=14% Similarity=0.098 Sum_probs=123.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSEN 144 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 144 (413)
..+|++|.|||++|.||+.++..|+..+ .+++++|+ .. .......+.+.. . .....+.+|+.++.+.+ .
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di-~~-~~g~a~Dl~~~~---~--~~~v~~~td~~~~~~~l--~ 75 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI-VG-APGVAADLSHID---T--PAKVTGYADGELWEKAL--R 75 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec-CC-CcccccchhhcC---c--CceEEEecCCCchHHHh--C
Confidence 3456899999999999999999999654 58999998 22 121111222211 1 23345666655545566 7
Q ss_pred CCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCC--CCCCCCCCCCCCChhHH
Q 015080 145 AFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEK--MPITEETPQAPINPYGK 222 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~--~~~~e~~~~~~~~~Y~~ 222 (413)
+.|+||++||.... ...+..+.+..|+..+++++++++++++.++|+++|-.+-.-..- ....+...++|...||.
T Consensus 76 gaDvVVitaG~~~~--~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~ 153 (321)
T PTZ00325 76 GADLVLICAGVPRK--PGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGV 153 (321)
T ss_pred CCCEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeec
Confidence 89999999997532 234567889999999999999999999999999999554321100 01123455666777888
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 223 AKKMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 223 sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
+-+..-++...+++..++....++ ++|+|..
T Consensus 154 g~LDs~R~r~~la~~l~v~~~~V~-~~VlGeH 184 (321)
T PTZ00325 154 TTLDVVRARKFVAEALGMNPYDVN-VPVVGGH 184 (321)
T ss_pred hhHHHHHHHHHHHHHhCcChhheE-EEEEeec
Confidence 756666777777788899998888 8899865
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=100.17 Aligned_cols=228 Identities=19% Similarity=0.188 Sum_probs=152.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
...++.|+.||.|+++++.....|+.|.++.++.++. .++.. ...+.+..+|+-...-....+ .++.-++
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k~-----~l~sw---~~~vswh~gnsfssn~~k~~l--~g~t~v~ 122 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVVHSVGILSENENKQ-----TLSSW---PTYVSWHRGNSFSSNPNKLKL--SGPTFVY 122 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhceeeeEeecccCcc-----hhhCC---CcccchhhccccccCcchhhh--cCCcccH
Confidence 4689999999999999999999999999987654421 11111 356777777776555445455 6778888
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
-++|-. .+......+|-....+...++.+.|+++|+|+|-.. ||-. +.. ...|-.+|.++|..
T Consensus 123 e~~ggf------gn~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~d-~~~~---------~~i-~rGY~~gKR~AE~E 185 (283)
T KOG4288|consen 123 EMMGGF------GNIILMDRINGTANINAVKAAAKAGVPRFVYISAHD-FGLP---------PLI-PRGYIEGKREAEAE 185 (283)
T ss_pred HHhcCc------cchHHHHHhccHhhHHHHHHHHHcCCceEEEEEhhh-cCCC---------Ccc-chhhhccchHHHHH
Confidence 887743 234556667888888889999999999999999732 2111 122 33799999999988
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHH
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~ 310 (413)
+... ++.+-++||||++||...-+. ........|..+......+.+....+++. +......+.++
T Consensus 186 ll~~---~~~rgiilRPGFiyg~R~v~g----~~~pL~~vg~pl~~~~~~a~k~~~kLp~l--------g~l~~ppvnve 250 (283)
T KOG4288|consen 186 LLKK---FRFRGIILRPGFIYGTRNVGG----IKSPLHTVGEPLEMVLKFALKPLNKLPLL--------GPLLAPPVNVE 250 (283)
T ss_pred HHHh---cCCCceeeccceeecccccCc----ccccHHhhhhhHHHHHHhhhchhhcCccc--------ccccCCCcCHH
Confidence 7764 568889999999999853211 11112122223333333332222224443 34556789999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHH
Q 015080 311 DLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKK 350 (413)
Q Consensus 311 Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~ 350 (413)
++|.+.+.+++.+.-. ..+++.|+.++..+
T Consensus 251 ~VA~aal~ai~dp~f~----------Gvv~i~eI~~~a~k 280 (283)
T KOG4288|consen 251 SVALAALKAIEDPDFK----------GVVTIEEIKKAAHK 280 (283)
T ss_pred HHHHHHHHhccCCCcC----------ceeeHHHHHHHHHH
Confidence 9999999998865532 24567777766544
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.4e-10 Score=104.79 Aligned_cols=172 Identities=13% Similarity=0.101 Sum_probs=121.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
++|.|||++|.||+.++..|+..+. +++++|+.. .......+.+.. . .....++++.+++.+.+ .+.|+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~---~--~~~i~~~~~~~d~~~~l--~~aDi 89 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHIN---T--PAQVRGFLGDDQLGDAL--KGADL 89 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCC---c--CceEEEEeCCCCHHHHc--CCCCE
Confidence 6899999999999999999997655 899999765 221111222111 1 11223444444566666 78999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCC--CCCCCCCCCCCCCCChhHHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEP--EKMPITEETPQAPINPYGKAKKM 226 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~--~~~~~~e~~~~~~~~~Y~~sK~~ 226 (413)
|||+||....+ ..+..+.+..|...++++.+.+.+.+...+|+++|--+=+.. -.........++|...|+.++..
T Consensus 90 VVitAG~~~~~--g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LD 167 (323)
T PLN00106 90 VIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLD 167 (323)
T ss_pred EEEeCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecch
Confidence 99999985432 345788899999999999999999998899999882220000 00001133456677889999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 227 AEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 227 ~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
.+++-..++++.|++...|+ ++|+|..
T Consensus 168 s~Rl~~~lA~~lgv~~~~V~-~~ViGeH 194 (323)
T PLN00106 168 VVRANTFVAEKKGLDPADVD-VPVVGGH 194 (323)
T ss_pred HHHHHHHHHHHhCCChhheE-EEEEEeC
Confidence 99999999999999988886 7788764
|
|
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-10 Score=81.09 Aligned_cols=62 Identities=47% Similarity=0.858 Sum_probs=44.8
Q ss_pred HHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccCCC
Q 015080 347 ACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409 (413)
Q Consensus 347 ~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~ 409 (413)
++.++.|+++++.+.+.++++....+.|++|++++|||+|++ +++++++++.+|+++|++||
T Consensus 1 A~e~vtG~~i~~~~~~rR~GD~~~~~Ad~~kA~~~LgW~p~~-~L~~~i~~~w~W~~~np~Gy 62 (62)
T PF13950_consen 1 AFEKVTGKKIPVEYAPRRPGDPAHLVADISKAREELGWKPKY-SLEDMIRDAWNWQKKNPNGY 62 (62)
T ss_dssp HHHHHHTS---EEEE---TT--SEE-B--HHHHHHC----SS-SHHHHHHHHHHHHHHSTTTT
T ss_pred CcHHHHCCCCCceECCCCCCchhhhhCCHHHHHHHhCCCcCC-CHHHHHHHHHHHHHHCcCCC
Confidence 467889999999999999999999999999999999999999 99999999999999999998
|
... |
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.7e-10 Score=96.33 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=77.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+++||||||++|. +++.|++.|++|++++|+.. ........+. ....+.++.+|++|++++.++++. .+
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~---~~~~l~~~l~-~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~ 75 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREV---KLENVKREST-TPESITPLPLDYHDDDALKLAIKSTIEKNGP 75 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHH---HHHHHHHHhh-cCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 47999999987765 99999999999999886432 2222222221 235788899999999999887765 56
Q ss_pred CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC----EEEEecc
Q 015080 146 FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD----TLIYSST 196 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~----~iV~~SS 196 (413)
+|++|+.+- +.++.++..++++.+++ ++|++=.
T Consensus 76 id~lv~~vh------------------~~~~~~~~~~~~~~gv~~~~~~~~h~~g 112 (177)
T PRK08309 76 FDLAVAWIH------------------SSAKDALSVVCRELDGSSETYRLFHVLG 112 (177)
T ss_pred CeEEEEecc------------------ccchhhHHHHHHHHccCCCCceEEEEeC
Confidence 888887653 34577899999999988 8988764
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-08 Score=95.32 Aligned_cols=99 Identities=25% Similarity=0.388 Sum_probs=76.6
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCC-CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
||+|||.|+ |+||+.+|..|+++| .+|++.+|+..+..++.... ..+++.+++|+.|.+++.+++ .+.|+
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~------~~~v~~~~vD~~d~~al~~li--~~~d~ 71 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI------GGKVEALQVDAADVDALVALI--KDFDL 71 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc------cccceeEEecccChHHHHHHH--hcCCE
Confidence 689999997 999999999999999 89999987654433332221 247999999999999999999 56699
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
|||++.... ...++++|.+.++ ++|-+|-
T Consensus 72 VIn~~p~~~------------------~~~i~ka~i~~gv-~yvDts~ 100 (389)
T COG1748 72 VINAAPPFV------------------DLTILKACIKTGV-DYVDTSY 100 (389)
T ss_pred EEEeCCchh------------------hHHHHHHHHHhCC-CEEEccc
Confidence 999986431 2367888888876 5665554
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.1e-08 Score=88.98 Aligned_cols=83 Identities=20% Similarity=0.206 Sum_probs=58.7
Q ss_pred CCceEEEEEcCC----------------ChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccC
Q 015080 68 EGVTHVLVTGGA----------------GYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131 (413)
Q Consensus 68 ~~~k~vlITGas----------------G~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 131 (413)
.| |+||||+|. ||+|++||++|+++|++|+++++....... .. .....+..+..|.
T Consensus 2 ~g-k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~---~~----~~~~~~~~V~s~~ 73 (229)
T PRK09620 2 KG-KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPN---DI----NNQLELHPFEGII 73 (229)
T ss_pred CC-CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCc---cc----CCceeEEEEecHH
Confidence 36 899999885 999999999999999999999864321110 00 0012344566644
Q ss_pred CCHHHHHHHhhcCCCcEEEEcCcccCc
Q 015080 132 GDAKAVNKFFSENAFDAVMHFAAVAYV 158 (413)
Q Consensus 132 ~d~~~~~~~~~~~~~dvvi~~Ag~~~~ 158 (413)
...+.+.+++.+.++|+|||+|++..+
T Consensus 74 d~~~~l~~~~~~~~~D~VIH~AAvsD~ 100 (229)
T PRK09620 74 DLQDKMKSIITHEKVDAVIMAAAGSDW 100 (229)
T ss_pred HHHHHHHHHhcccCCCEEEECccccce
Confidence 444677787765679999999998654
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.9e-07 Score=87.16 Aligned_cols=167 Identities=13% Similarity=0.091 Sum_probs=115.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-------EEEEEecCCCC--Cchhhhhhhhhc-CCCCceEEEEccCCCHHHHHHH
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRG--NIGAVKVLQELF-PEPGRLQFIYADLGDAKAVNKF 140 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-------~V~~~~r~~~~--~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~ 140 (413)
++|.|+|++|.||+.++..|+..|. +++++|..... ....+..+.+.. +...++.+. . .+. +.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~--~~~----~~ 75 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT-D--DPN----VA 75 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe-c--CcH----HH
Confidence 6899999999999999999998875 79999874332 222222232221 111122221 1 222 22
Q ss_pred hhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC--CCEEEEeccc---eecCCCCCCCCCCCCC-C
Q 015080 141 FSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG--VDTLIYSSTC---ATYGEPEKMPITEETP-Q 214 (413)
Q Consensus 141 ~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~iV~~SS~---~~~~~~~~~~~~e~~~-~ 214 (413)
+ .+.|+||.+||.... ...+..+.++.|+.-.+.+.+.+.+.+ ...+|.+|.- .+|- .....+ .
T Consensus 76 ~--~daDivvitaG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~------~~k~sg~~ 145 (322)
T cd01338 76 F--KDADWALLVGAKPRG--PGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALI------AMKNAPDI 145 (322)
T ss_pred h--CCCCEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHH------HHHHcCCC
Confidence 3 688999999997533 234677889999999999999999886 3355555541 1110 011222 4
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 215 APINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
++...|+.+++..+++...+++..|++...+|...|||+.
T Consensus 146 p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeH 185 (322)
T cd01338 146 PPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNH 185 (322)
T ss_pred ChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCC
Confidence 5567899999999999999999999999999988999986
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-07 Score=88.79 Aligned_cols=170 Identities=13% Similarity=0.048 Sum_probs=101.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC-------CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS-------YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
.+|+||||+|+||++++..|+..+ .+|+++|+.... +.+.....++. ........|+....++.+.+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~~~g~~~Dl~---d~~~~~~~~~~~~~~~~~~l-- 76 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KALEGVVMELQ---DCAFPLLKSVVATTDPEEAF-- 76 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-ccccceeeehh---hccccccCCceecCCHHHHh--
Confidence 579999999999999999999854 589999985431 11111000000 00001223544455565666
Q ss_pred CCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC--CCEEEEeccce---ecCCCCCCCCCCCCC-CCCC
Q 015080 144 NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG--VDTLIYSSTCA---TYGEPEKMPITEETP-QAPI 217 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~iV~~SS~~---~~~~~~~~~~~e~~~-~~~~ 217 (413)
.++|+|||+||.... ...+..+.++.|+.-.+.+.+.+.+.. ...+|.+|.-. .|- ..+..+ .++.
T Consensus 77 ~~aDiVI~tAG~~~~--~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~------~~k~~~~~~~~ 148 (325)
T cd01336 77 KDVDVAILVGAMPRK--EGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALI------LLKYAPSIPKE 148 (325)
T ss_pred CCCCEEEEeCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHH------HHHHcCCCCHH
Confidence 689999999998543 234568899999999999999998883 34555555411 000 001111 1111
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 218 NPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
..=+.+.+..-++-..+++..+++...++-..|+|..
T Consensus 149 ~ig~gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeH 185 (325)
T cd01336 149 NFTALTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNH 185 (325)
T ss_pred HEEeeehHHHHHHHHHHHHHhCcChhhceEeEEEEcC
Confidence 1112233333444455556678888888877788864
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.1e-07 Score=90.42 Aligned_cols=78 Identities=24% Similarity=0.215 Sum_probs=61.0
Q ss_pred CCCceEEEEEcC----------------CChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEcc
Q 015080 67 EEGVTHVLVTGG----------------AGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD 130 (413)
Q Consensus 67 ~~~~k~vlITGa----------------sG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D 130 (413)
+.+ |+|||||| ||.+|.++|++|+++|++|++++++.. .. .+.. +..+|
T Consensus 186 l~g-k~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~-~~-----------~~~~--~~~~d 250 (399)
T PRK05579 186 LAG-KRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN-LP-----------TPAG--VKRID 250 (399)
T ss_pred cCC-CEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc-cc-----------CCCC--cEEEc
Confidence 346 89999999 888999999999999999999986431 10 0122 34579
Q ss_pred CCCHHHHHHHhhc--CCCcEEEEcCcccCcc
Q 015080 131 LGDAKAVNKFFSE--NAFDAVMHFAAVAYVG 159 (413)
Q Consensus 131 l~d~~~~~~~~~~--~~~dvvi~~Ag~~~~~ 159 (413)
+++.+++.+++++ .++|++|||||+..+.
T Consensus 251 v~~~~~~~~~v~~~~~~~DilI~~Aav~d~~ 281 (399)
T PRK05579 251 VESAQEMLDAVLAALPQADIFIMAAAVADYR 281 (399)
T ss_pred cCCHHHHHHHHHHhcCCCCEEEEcccccccc
Confidence 9999998888765 5799999999986543
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.5e-07 Score=84.15 Aligned_cols=170 Identities=17% Similarity=0.072 Sum_probs=101.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHH---CCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLK---DSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
|+|+|.||+|.||++++..|.. .++++++++++.. .....-.+.+. .....+.+ .+.+++.+.+ .++|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~----~~~~~i~~--~~~~d~~~~l--~~~D 71 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHI----PTAVKIKG--FSGEDPTPAL--EGAD 71 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcC----CCCceEEE--eCCCCHHHHc--CCCC
Confidence 5799999999999999998855 2568888887532 21111111110 11112222 1122333444 5799
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccee----cCCCCCCCCCCCCCCCCCChhHHH
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCAT----YGEPEKMPITEETPQAPINPYGKA 223 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~----~~~~~~~~~~e~~~~~~~~~Y~~s 223 (413)
+||.++|.... ...+....+..|....+.+++.+.+.+.+++|.+.|--+ |-.... +....-.++....+..
T Consensus 72 iVIitaG~~~~--~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~--~~~~sg~p~~rvig~~ 147 (312)
T PRK05086 72 VVLISAGVARK--PGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEV--LKKAGVYDKNKLFGVT 147 (312)
T ss_pred EEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHH--HHHhcCCCHHHEEeee
Confidence 99999997543 234577889999999999999999999888988888211 100000 0000001111122222
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 224 KKMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 224 K~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
-...-++...+++..|++...+. ++|+|..
T Consensus 148 ~Lds~R~~~~ia~~l~~~~~~v~-~~v~GeH 177 (312)
T PRK05086 148 TLDVIRSETFVAELKGKQPGEVE-VPVIGGH 177 (312)
T ss_pred cHHHHHHHHHHHHHhCCChhheE-EEEEEec
Confidence 23334555556666888888887 8888864
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.6e-07 Score=81.15 Aligned_cols=73 Identities=22% Similarity=0.225 Sum_probs=49.1
Q ss_pred EEEE-cCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC--HHHHHHHhhcCCCcEE
Q 015080 73 VLVT-GGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD--AKAVNKFFSENAFDAV 149 (413)
Q Consensus 73 vlIT-GasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~dvv 149 (413)
=.|| .+|||||++||++|+++|++|+++++...... .. ..++.++.++..+ .+.+.+.+ .++|+|
T Consensus 18 R~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~---------~~-~~~v~~i~v~s~~~m~~~l~~~~--~~~Div 85 (229)
T PRK06732 18 RGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVKP---------EP-HPNLSIIEIENVDDLLETLEPLV--KDHDVL 85 (229)
T ss_pred eeecCccchHHHHHHHHHHHhCCCEEEEEECcccccC---------CC-CCCeEEEEEecHHHHHHHHHHHh--cCCCEE
Confidence 3455 56889999999999999999999986432100 00 1356666654322 23444555 579999
Q ss_pred EEcCcccC
Q 015080 150 MHFAAVAY 157 (413)
Q Consensus 150 i~~Ag~~~ 157 (413)
|||||+..
T Consensus 86 Ih~AAvsd 93 (229)
T PRK06732 86 IHSMAVSD 93 (229)
T ss_pred EeCCccCC
Confidence 99999864
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.5e-07 Score=82.39 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=51.6
Q ss_pred EEEE-cCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CCC
Q 015080 73 VLVT-GGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NAF 146 (413)
Q Consensus 73 vlIT-GasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~~ 146 (413)
=.|| .+||+||.++|++|+++|++|+++++... +. . . ....+|+.+.+++.++++. .++
T Consensus 17 R~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~--------l~---~--~--~~~~~Dv~d~~s~~~l~~~v~~~~g~i 81 (227)
T TIGR02114 17 RSITNHSTGHLGKIITETFLSAGHEVTLVTTKRA--------LK---P--E--PHPNLSIREIETTKDLLITLKELVQEH 81 (227)
T ss_pred eeecCCcccHHHHHHHHHHHHCCCEEEEEcChhh--------cc---c--c--cCCcceeecHHHHHHHHHHHHHHcCCC
Confidence 3455 45899999999999999999999865210 00 0 0 0134899998888766543 579
Q ss_pred cEEEEcCcccCcc
Q 015080 147 DAVMHFAAVAYVG 159 (413)
Q Consensus 147 dvvi~~Ag~~~~~ 159 (413)
|++|||||+....
T Consensus 82 DiLVnnAgv~d~~ 94 (227)
T TIGR02114 82 DILIHSMAVSDYT 94 (227)
T ss_pred CEEEECCEecccc
Confidence 9999999986543
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-06 Score=86.24 Aligned_cols=95 Identities=22% Similarity=0.310 Sum_probs=66.5
Q ss_pred EEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|.|| |++|+.+++.|++.+- +|++.+|+..+.++..+.+ .+.++.++++|+.|.+++.+++ .+.|+||
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~l~~~~--~~~dvVi 72 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-----LGDRVEAVQVDVNDPESLAELL--RGCDVVI 72 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-------TTTTEEEEE--TTTHHHHHHHH--TTSSEEE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-----cccceeEEEEecCCHHHHHHHH--hcCCEEE
Confidence 789999 9999999999999964 7999887554433332221 2468999999999999999999 6789999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYS 194 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~ 194 (413)
||++... ...++++|.+.++ ++|-+
T Consensus 73 n~~gp~~------------------~~~v~~~~i~~g~-~yvD~ 97 (386)
T PF03435_consen 73 NCAGPFF------------------GEPVARACIEAGV-HYVDT 97 (386)
T ss_dssp E-SSGGG------------------HHHHHHHHHHHT--EEEES
T ss_pred ECCccch------------------hHHHHHHHHHhCC-Ceecc
Confidence 9998541 2346677777765 56663
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-06 Score=77.60 Aligned_cols=81 Identities=25% Similarity=0.249 Sum_probs=60.1
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
.+ ++++|+||+|++|+.+++.|++.|++|++++|+..+ +.+....+... .+.....+|..+.+++.+++ .++|
T Consensus 27 ~~-~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~---~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~--~~~d 99 (194)
T cd01078 27 KG-KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLER---AQKAADSLRAR-FGEGVGAVETSDDAARAAAI--KGAD 99 (194)
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHH---HHHHHHHHHhh-cCCcEEEeeCCCHHHHHHHH--hcCC
Confidence 35 899999999999999999999999999998765332 22222222111 23456678999999998888 6789
Q ss_pred EEEEcCcc
Q 015080 148 AVMHFAAV 155 (413)
Q Consensus 148 vvi~~Ag~ 155 (413)
+||++...
T Consensus 100 iVi~at~~ 107 (194)
T cd01078 100 VVFAAGAA 107 (194)
T ss_pred EEEECCCC
Confidence 99987653
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.4e-06 Score=80.07 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=61.4
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCE-EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
.+ |+++|||| |++|++++..|++.|++ |++++|+....+++.+..+++......+.+..+|+++.+++.+.+ ...
T Consensus 125 ~~-k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~--~~~ 200 (289)
T PRK12548 125 KG-KKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEI--ASS 200 (289)
T ss_pred CC-CEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhh--ccC
Confidence 35 89999998 89999999999999996 999987642122333333333222234566778999888888777 567
Q ss_pred cEEEEcCccc
Q 015080 147 DAVMHFAAVA 156 (413)
Q Consensus 147 dvvi~~Ag~~ 156 (413)
|+||||-.+.
T Consensus 201 DilINaTp~G 210 (289)
T PRK12548 201 DILVNATLVG 210 (289)
T ss_pred CEEEEeCCCC
Confidence 9999987654
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.6e-06 Score=74.40 Aligned_cols=98 Identities=13% Similarity=0.126 Sum_probs=73.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||+||||. |+.|++.|.+.|++|++..+.........+ .+...+..+..|.+++.+++++.++|+||
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~---------~g~~~v~~g~l~~~~l~~~l~~~~i~~VI 70 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPI---------HQALTVHTGALDPQELREFLKRHSIDILV 70 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccc---------cCCceEEECCCCHHHHHHHHHhcCCCEEE
Confidence 47999999999 999999999999999988765543322111 22334557778888899999888999999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIY 193 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~ 193 (413)
+++... . ...++++.++|++.++..+=|
T Consensus 71 DAtHPf---------A------~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 71 DATHPF---------A------AQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred EcCCHH---------H------HHHHHHHHHHHHHhCCcEEEE
Confidence 987532 1 234778889999998865544
|
This enzyme was found to be a monomer by gel filtration. |
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.5e-06 Score=82.64 Aligned_cols=106 Identities=21% Similarity=0.190 Sum_probs=71.9
Q ss_pred CCCceEEEEEcC---------------C-ChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEcc
Q 015080 67 EEGVTHVLVTGG---------------A-GYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD 130 (413)
Q Consensus 67 ~~~~k~vlITGa---------------s-G~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D 130 (413)
+.+ |+|||||| | |.+|.+++++|..+|++|+++++..... .+..+ ..+|
T Consensus 183 ~~~-~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~------------~~~~~--~~~~ 247 (390)
T TIGR00521 183 LEG-KRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL------------TPPGV--KSIK 247 (390)
T ss_pred cCC-ceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC------------CCCCc--EEEE
Confidence 446 89999999 3 4599999999999999999987543211 01222 4589
Q ss_pred CCCHHHH-HHHhhc--CCCcEEEEcCcccCccCCcCC------hHHHHHHHHHHHHHHHHHHHHcC
Q 015080 131 LGDAKAV-NKFFSE--NAFDAVMHFAAVAYVGESTLD------PLKYYHNITSNTLVVLESMARHG 187 (413)
Q Consensus 131 l~d~~~~-~~~~~~--~~~dvvi~~Ag~~~~~~~~~~------~~~~~~~n~~~~~~ll~~~~~~~ 187 (413)
+++.+++ +++++. .++|++|||||+..+...... ....+..|+.-+-.++..+++..
T Consensus 248 v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~ 313 (390)
T TIGR00521 248 VSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK 313 (390)
T ss_pred eccHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence 9999888 545533 468999999998755331110 01123355566777888888654
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.7e-05 Score=75.26 Aligned_cols=166 Identities=15% Similarity=0.155 Sum_probs=99.0
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCC-------EEEEEecCC--CCCchhhhhhhhhc-CCCCceEEEEccCCCHHHHHHHh
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLS--RGNIGAVKVLQELF-PEPGRLQFIYADLGDAKAVNKFF 141 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~ 141 (413)
+|.||||+|.||+.++..|+..|. +++++|+.. ...+.....+.+.. +....+. ++ ....+.+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~-----i~--~~~~~~~ 74 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVV-----IT--TDPEEAF 74 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcE-----Ee--cChHHHh
Confidence 689999999999999999998653 589998754 22222211121111 0001111 11 1234445
Q ss_pred hcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEeccce---ecCCCCCCCCCCCCC-CC
Q 015080 142 SENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-GVD-TLIYSSTCA---TYGEPEKMPITEETP-QA 215 (413)
Q Consensus 142 ~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~-~iV~~SS~~---~~~~~~~~~~~e~~~-~~ 215 (413)
.++|+|||+||.... ..++..+.+..|+.-.+.+.+.+.+. +.. .+|.+|.-. +|- ..+... .+
T Consensus 75 --~~aDiVVitAG~~~~--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~------~~k~sg~~p 144 (323)
T cd00704 75 --KDVDVAILVGAFPRK--PGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALI------ALKNAPNLP 144 (323)
T ss_pred --CCCCEEEEeCCCCCC--cCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHH------HHHHcCCCC
Confidence 789999999997533 34567889999999999999999988 344 455554300 110 001111 12
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 216 PINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
+...-+.+.+..-++-..+++..+++...+.-..|+|..
T Consensus 145 ~~~vig~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeH 183 (323)
T cd00704 145 PKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIWGNH 183 (323)
T ss_pred HHHEEEeeHHHHHHHHHHHHHHhCcCHHHceeeeEEecc
Confidence 222234455555555566666677777777656778864
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.9e-05 Score=65.53 Aligned_cols=115 Identities=21% Similarity=0.262 Sum_probs=78.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCC-CCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPE-PGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
++|.|+|++|.+|++++..|...+. +++++|+.....+.....+.+.... .....+.. .++++ + .+.|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~~~----~--~~aD 71 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GDYEA----L--KDAD 71 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SSGGG----G--TTES
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---ccccc----c--cccc
Confidence 4799999999999999999999965 8999997644344333334333221 12223323 23332 3 6789
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
+||..||.... ...+..+.++.|..-.+.+.+.+.+.+.. .++.+|.
T Consensus 72 ivvitag~~~~--~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtN 119 (141)
T PF00056_consen 72 IVVITAGVPRK--PGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTN 119 (141)
T ss_dssp EEEETTSTSSS--TTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SS
T ss_pred EEEEecccccc--ccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCC
Confidence 99999997532 23457788999999999999999998644 4555543
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.15 E-value=3e-05 Score=73.58 Aligned_cols=158 Identities=13% Similarity=0.090 Sum_probs=97.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCC-------EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHH---------
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAK--------- 135 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~--------- 135 (413)
+|.|+||+|.+|++++..|+..|. +++++|+..... ..+....|+.|..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~---------------~a~g~~~Dl~d~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK---------------VLEGVVMELMDCAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc---------------ccceeEeehhcccchhcCceec
Confidence 489999999999999999987543 589998743321 1112223333332
Q ss_pred --HHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEeccce---ecCCCCCCCC
Q 015080 136 --AVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-GV-DTLIYSSTCA---TYGEPEKMPI 208 (413)
Q Consensus 136 --~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~iV~~SS~~---~~~~~~~~~~ 208 (413)
...+.+ .++|+||++||.... ..++..+.+..|+.-.+.+.+.+.+. +. ..+|.+|.-. .|-.
T Consensus 66 ~~~~~~~~--~~aDiVVitAG~~~~--~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~------ 135 (324)
T TIGR01758 66 THDPAVAF--TDVDVAILVGAFPRK--EGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL------ 135 (324)
T ss_pred cCChHHHh--CCCCEEEEcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH------
Confidence 223344 689999999997533 23456788999999999999999998 34 4555555400 1100
Q ss_pred CCCC-CCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 209 TEET-PQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 209 ~e~~-~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
.+.. -+++...=+.+.+..-++-..+++..+++...++-.+|+|..
T Consensus 136 ~~~sg~~~~~vig~gt~LDs~R~r~~la~~l~v~~~~V~~~~V~GeH 182 (324)
T TIGR01758 136 SNYAPSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNH 182 (324)
T ss_pred HHHcCCCCcceEEEeeehHHHHHHHHHHHHhCCChhhceEeEEEECC
Confidence 0000 011111122233444455556666688888888877888864
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.3e-06 Score=77.21 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=49.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHC-C-CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKD-S-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSEN 144 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~-G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 144 (413)
+.+ |+|+||||+|+||+.++++|+++ | .++++++|+..+.. ....++ . .+|+. ++.+++ .
T Consensus 153 l~~-k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~---~La~el-~--------~~~i~---~l~~~l--~ 214 (340)
T PRK14982 153 LSK-ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQ---ELQAEL-G--------GGKIL---SLEEAL--P 214 (340)
T ss_pred cCC-CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHH---HHHHHh-c--------cccHH---hHHHHH--c
Confidence 456 89999999999999999999865 5 48888876433222 211111 1 13333 355666 6
Q ss_pred CCcEEEEcCcccC
Q 015080 145 AFDAVMHFAAVAY 157 (413)
Q Consensus 145 ~~dvvi~~Ag~~~ 157 (413)
++|+|||+++...
T Consensus 215 ~aDiVv~~ts~~~ 227 (340)
T PRK14982 215 EADIVVWVASMPK 227 (340)
T ss_pred cCCEEEECCcCCc
Confidence 7899999998653
|
|
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1e-05 Score=74.91 Aligned_cols=83 Identities=8% Similarity=0.188 Sum_probs=64.4
Q ss_pred EEEEEcCCChHHHHHHHHHHH----CCCEEEEEecCCCCCchhhhhhhhhcCC--CCceEEEEccCCCHHHHHHHhhcCC
Q 015080 72 HVLVTGGAGYIGSHAALRLLK----DSYRVTIVDNLSRGNIGAVKVLQELFPE--PGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~----~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
.++|.|||||-|..+++++.. .|...-+.+|+..+..+..+.+.+-.+. +..+ ++.+|.+|++++.+.+ ..
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~-i~i~D~~n~~Sl~ema--k~ 83 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSV-ILIADSANEASLDEMA--KQ 83 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccce-EEEecCCCHHHHHHHH--hh
Confidence 589999999999999999999 6778878777665555555444433321 2334 8899999999999999 67
Q ss_pred CcEEEEcCcccC
Q 015080 146 FDAVMHFAAVAY 157 (413)
Q Consensus 146 ~dvvi~~Ag~~~ 157 (413)
+.+|+||+|...
T Consensus 84 ~~vivN~vGPyR 95 (423)
T KOG2733|consen 84 ARVIVNCVGPYR 95 (423)
T ss_pred hEEEEeccccce
Confidence 899999999753
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00017 Score=68.26 Aligned_cols=116 Identities=18% Similarity=0.206 Sum_probs=81.7
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
.+ ++|.|+|+ |.+|+.++..|+..|. ++.++|++..........+.+..+....+.... .+.++ + .+
T Consensus 5 ~~-~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~---~~~~~----~--~~ 73 (315)
T PRK00066 5 QH-NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA---GDYSD----C--KD 73 (315)
T ss_pred CC-CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe---CCHHH----h--CC
Confidence 45 78999997 9999999999999987 899999866655555555554432212333332 23332 3 68
Q ss_pred CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 146 FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
.|+||..||...- ...+..+.+..|..-.+.+++.+.+.+.. .++.+|.
T Consensus 74 adivIitag~~~k--~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 74 ADLVVITAGAPQK--PGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred CCEEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 8999999997532 23456788999999999999999987644 4454443
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.98 E-value=9e-05 Score=69.72 Aligned_cols=166 Identities=15% Similarity=0.094 Sum_probs=101.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|.|+|++|.+|++++..|+..|. +++++|.+ ..+..+..+.+.. ....+..+. .+ +++.+.+ .+.|+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~---~~~~i~~~~-~~-~~~y~~~--~daDi 71 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHIN---TPAKVTGYL-GP-EELKKAL--KGADV 71 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCC---CcceEEEec-CC-CchHHhc--CCCCE
Confidence 4789999999999999999998874 89999976 2222222232221 111222110 11 1122334 68999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccce-------ecCCCCCCCCCCCCCCCCCChh
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSSTCA-------TYGEPEKMPITEETPQAPINPY 220 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS~~-------~~~~~~~~~~~e~~~~~~~~~Y 220 (413)
||-+||.... ...+..+.++.|..-.+.+.+.+.+.+.. .+|.+|.-. .|-. ......++....
T Consensus 72 vvitaG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~------~~~s~~p~~rvi 143 (310)
T cd01337 72 VVIPAGVPRK--PGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVL------KKAGVYDPKRLF 143 (310)
T ss_pred EEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHH------HHhcCCCHHHEE
Confidence 9999997532 23567889999999999999999988644 455555411 1100 001111212223
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 221 GKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 221 ~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
+..-...-++...++++.|++...++ ++|+|..
T Consensus 144 G~~~LDs~R~~~~la~~l~v~~~~V~-~~v~GeH 176 (310)
T cd01337 144 GVTTLDVVRANTFVAELLGLDPAKVN-VPVIGGH 176 (310)
T ss_pred eeechHHHHHHHHHHHHhCcCHHHEE-EEEEecC
Confidence 33324445556666677888887887 8889865
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00017 Score=68.43 Aligned_cols=167 Identities=13% Similarity=0.122 Sum_probs=102.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-------EEEEEecCCCC--Cchhhhhhhhhc-CCCCceEEEEccCCCHHHHHHH
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRG--NIGAVKVLQELF-PEPGRLQFIYADLGDAKAVNKF 140 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-------~V~~~~r~~~~--~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~ 140 (413)
-+|.|+|++|++|++++..|+..|. +++++|..... ....+..+.+.. ....++.+ .. .+. +.
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i-~~--~~~----~~ 76 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVA-TT--DPE----EA 76 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEE-ec--ChH----HH
Confidence 5799999999999999999998874 79999875422 233333333221 11112221 11 122 22
Q ss_pred hhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC-C-EEEEecc---ceecCCCCCCCCCCCC-CC
Q 015080 141 FSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV-D-TLIYSST---CATYGEPEKMPITEET-PQ 214 (413)
Q Consensus 141 ~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~-~iV~~SS---~~~~~~~~~~~~~e~~-~~ 214 (413)
+ .+.|+||..||.... ..++..+.+..|..-.+.+.+.+.+... . .++.+|. ..+|- ..+.. -.
T Consensus 77 ~--~daDvVVitAG~~~k--~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v------~~k~s~g~ 146 (323)
T TIGR01759 77 F--KDVDAALLVGAFPRK--PGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALI------ASKNAPDI 146 (323)
T ss_pred h--CCCCEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHH------HHHHcCCC
Confidence 3 688999999997532 3456788999999999999999999864 4 4455543 00110 00011 11
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 215 APINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
++....+.+.+..-++-..+++..+++...++-..|+|..
T Consensus 147 p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeH 186 (323)
T TIGR01759 147 PPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNH 186 (323)
T ss_pred CHHHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEecC
Confidence 1222233345555555566667688888888777788864
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0048 Score=51.13 Aligned_cols=160 Identities=16% Similarity=0.147 Sum_probs=94.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHH-------HHHhhc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAV-------NKFFSE 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~-------~~~~~~ 143 (413)
.+|+|-||-|-+|++++..|.++++-|.-+|....... ..-.++..|-+=.++- .+.+..
T Consensus 4 grVivYGGkGALGSacv~~FkannywV~siDl~eNe~A-------------d~sI~V~~~~swtEQe~~v~~~vg~sL~g 70 (236)
T KOG4022|consen 4 GRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQA-------------DSSILVDGNKSWTEQEQSVLEQVGSSLQG 70 (236)
T ss_pred ceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccccc-------------cceEEecCCcchhHHHHHHHHHHHHhhcc
Confidence 48999999999999999999999999988875332211 2223344444333332 233444
Q ss_pred CCCcEEEEcCcccCccC-----CcCChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEecc-ceecCCCCCCCCCCCCCCCC
Q 015080 144 NAFDAVMHFAAVAYVGE-----STLDPLKYYHNITSNTLVVLESMARH-GVDTLIYSST-CATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~iV~~SS-~~~~~~~~~~~~~e~~~~~~ 216 (413)
.++|.|+.-||-...+. ...+.+..|+-.+....--...+.++ +.+-++.+.. -...+..++
T Consensus 71 ekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~gTPg----------- 139 (236)
T KOG4022|consen 71 EKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALGGTPG----------- 139 (236)
T ss_pred cccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccCCCCc-----------
Confidence 78999999987543322 22334445554444322222222222 3333444433 334443333
Q ss_pred CChhHHHHHHHHHHHHHHHhh-CCC----cEEEEeecceecCC
Q 015080 217 INPYGKAKKMAEDIILDFSKN-SDM----AVMILRYFNVIGSD 254 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~-~gi----~~~~lrp~~v~G~~ 254 (413)
.-.|+..|++..+++++++.+ .|+ -+..+-|-..-.|.
T Consensus 140 MIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPM 182 (236)
T KOG4022|consen 140 MIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPM 182 (236)
T ss_pred ccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCcc
Confidence 678999999999999999876 444 34455555554443
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00013 Score=69.71 Aligned_cols=112 Identities=21% Similarity=0.346 Sum_probs=74.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC---------------------CCCchhhhhhhhhcCCCCc
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS---------------------RGNIGAVKVLQELFPEPGR 123 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~---------------------~~~~~~~~~~~~~~~~~~~ 123 (413)
.+.+ ++|+|.| .|++|+++++.|+..|. +++++|+.. .+.+.+++.++++.+. -.
T Consensus 21 ~L~~-~~VlIiG-~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~-v~ 97 (338)
T PRK12475 21 KIRE-KHVLIVG-AGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSE-VE 97 (338)
T ss_pred hhcC-CcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCC-cE
Confidence 3445 8899999 58999999999999998 889898753 1122234555555443 56
Q ss_pred eEEEEccCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecC
Q 015080 124 LQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYG 201 (413)
Q Consensus 124 ~~~~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~ 201 (413)
++.+..|++ .+.+.+++ .++|+||.+.. +.+. -..+-+.+.+.++ .+|+.+....+|
T Consensus 98 i~~~~~~~~-~~~~~~~~--~~~DlVid~~D---------~~~~--------r~~in~~~~~~~i-p~i~~~~~g~~G 154 (338)
T PRK12475 98 IVPVVTDVT-VEELEELV--KEVDLIIDATD---------NFDT--------RLLINDLSQKYNI-PWIYGGCVGSYG 154 (338)
T ss_pred EEEEeccCC-HHHHHHHh--cCCCEEEEcCC---------CHHH--------HHHHHHHHHHcCC-CEEEEEecccEE
Confidence 777778886 45677777 67999997753 1111 1124455666665 577776655444
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.88 E-value=9e-05 Score=64.26 Aligned_cols=77 Identities=25% Similarity=0.320 Sum_probs=48.2
Q ss_pred CCceEEEEEcC----------------CChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccC
Q 015080 68 EGVTHVLVTGG----------------AGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131 (413)
Q Consensus 68 ~~~k~vlITGa----------------sG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 131 (413)
.| |+||||+| ||-.|.+||+.+..+|++|+++..... .. .+..+..+. +
T Consensus 2 ~g-k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~-~~-----------~p~~~~~i~--v 66 (185)
T PF04127_consen 2 KG-KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS-LP-----------PPPGVKVIR--V 66 (185)
T ss_dssp TT--EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------------TTEEEEE---
T ss_pred CC-CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc-cc-----------ccccceEEE--e
Confidence 35 78888865 689999999999999999999876421 10 024565554 5
Q ss_pred CCHHHHHHHhhc--CCCcEEEEcCcccCcc
Q 015080 132 GDAKAVNKFFSE--NAFDAVMHFAAVAYVG 159 (413)
Q Consensus 132 ~d~~~~~~~~~~--~~~dvvi~~Ag~~~~~ 159 (413)
...+++.+.+.+ ...|++||+|++..+.
T Consensus 67 ~sa~em~~~~~~~~~~~Di~I~aAAVsDf~ 96 (185)
T PF04127_consen 67 ESAEEMLEAVKELLPSADIIIMAAAVSDFR 96 (185)
T ss_dssp SSHHHHHHHHHHHGGGGSEEEE-SB--SEE
T ss_pred cchhhhhhhhccccCcceeEEEecchhhee
Confidence 566666555544 4569999999987553
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00047 Score=65.24 Aligned_cols=165 Identities=15% Similarity=0.182 Sum_probs=100.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCC-CCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPE-PGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
++|.|.|+ |.+|+.++..|+..| ++|++++++....+.....+.+.... +....... .+.+. + .+.|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~---~~~~~----l--~~aD 70 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA---GDYSD----C--KDAD 70 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc---CCHHH----h--CCCC
Confidence 36899995 999999999999999 58999998766655555555443211 12222222 23322 3 6889
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccce---ecCCCCCCCCCCCCCCCCCChhHH-
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSSTCA---TYGEPEKMPITEETPQAPINPYGK- 222 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS~~---~~~~~~~~~~~e~~~~~~~~~Y~~- 222 (413)
+||+++|.... ...+..+.++.|..-.+.+.+.+++.+.. .++.+|.-. .|-.. .....++....+.
T Consensus 71 IVIitag~~~~--~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~~------~~~g~p~~~v~g~g 142 (306)
T cd05291 71 IVVITAGAPQK--PGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVVQ------KLSGLPKNRVIGTG 142 (306)
T ss_pred EEEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHH------HHhCcCHHHEeecc
Confidence 99999997532 23466788999999999999999988644 445554300 00000 0000111111222
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 223 AKKMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 223 sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
+-+..-++...+++..+++...++. .|+|..
T Consensus 143 t~LDs~R~~~~la~~l~v~~~~v~~-~V~G~H 173 (306)
T cd05291 143 TSLDTARLRRALAEKLNVDPRSVHA-YVLGEH 173 (306)
T ss_pred chHHHHHHHHHHHHHHCCCcccceE-EEEecC
Confidence 1222334444455557888877874 789874
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00025 Score=67.75 Aligned_cols=111 Identities=24% Similarity=0.428 Sum_probs=74.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC---------------------CCCchhhhhhhhhcCCCCce
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS---------------------RGNIGAVKVLQELFPEPGRL 124 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~---------------------~~~~~~~~~~~~~~~~~~~~ 124 (413)
+.+ ++|+|.|+ |++|++++..|+..|. +++++|... .+.+.+.+.++++.+. -.+
T Consensus 22 L~~-~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~-v~v 98 (339)
T PRK07688 22 LRE-KHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSD-VRV 98 (339)
T ss_pred hcC-CcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCC-cEE
Confidence 445 78999995 9999999999999999 899998753 1112233445554433 456
Q ss_pred EEEEccCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecC
Q 015080 125 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYG 201 (413)
Q Consensus 125 ~~~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~ 201 (413)
+.+..+++. +.+.+++ .++|+||.+.. +. ..-..+-+.+.+.++ .+|+.++...||
T Consensus 99 ~~~~~~~~~-~~~~~~~--~~~DlVid~~D---------n~--------~~r~~ln~~~~~~~i-P~i~~~~~g~~G 154 (339)
T PRK07688 99 EAIVQDVTA-EELEELV--TGVDLIIDATD---------NF--------ETRFIVNDAAQKYGI-PWIYGACVGSYG 154 (339)
T ss_pred EEEeccCCH-HHHHHHH--cCCCEEEEcCC---------CH--------HHHHHHHHHHHHhCC-CEEEEeeeeeee
Confidence 667778754 4566677 67899998743 12 222235566777765 678877766554
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00035 Score=66.37 Aligned_cols=167 Identities=13% Similarity=0.088 Sum_probs=100.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-------EEEEEecCCCC--Cchhhhhhhhhc-CCCCceEEEEccCCCHHHHHHH
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRG--NIGAVKVLQELF-PEPGRLQFIYADLGDAKAVNKF 140 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-------~V~~~~r~~~~--~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~ 140 (413)
++|.|+|++|.+|+.++..|+..|. +++++|..... ....+..+.+.. +...++.+. . .+. +.
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~-~--~~y----~~ 77 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT-D--DPN----VA 77 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe-c--ChH----HH
Confidence 7899999999999999999988654 78999874322 222222222221 111122221 1 122 22
Q ss_pred hhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC--CCEEEEeccce---ecCCCCCCCCCCCC-CC
Q 015080 141 FSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG--VDTLIYSSTCA---TYGEPEKMPITEET-PQ 214 (413)
Q Consensus 141 ~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~iV~~SS~~---~~~~~~~~~~~e~~-~~ 214 (413)
+ .+.|+||-+||.... ..++..+.+..|..-.+.+.+.+.+.. ...+|.+|.-. +|-. .+.. -.
T Consensus 78 ~--~daDiVVitaG~~~k--~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~------~k~s~g~ 147 (326)
T PRK05442 78 F--KDADVALLVGARPRG--PGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA------MKNAPDL 147 (326)
T ss_pred h--CCCCEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH------HHHcCCC
Confidence 3 688999999997432 245678889999999999999999843 44566666410 1100 0001 11
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 215 APINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
++....+.+-+..-++-..+++..+++...++...|+|..
T Consensus 148 p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeH 187 (326)
T PRK05442 148 PAENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGNH 187 (326)
T ss_pred CHHHEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEECC
Confidence 1122233344445555566666688888888766678864
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00097 Score=66.26 Aligned_cols=169 Identities=18% Similarity=0.208 Sum_probs=110.7
Q ss_pred eEEEEEcCC-ChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCC----CCceEEEEccCCCHHHHHHHhhc--
Q 015080 71 THVLVTGGA-GYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE----PGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 71 k~vlITGas-G~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
+.+|||||+ |-||.+++..|++-|++|++.. ++-.++..+..+.+... +..+-++.++...+.+++.+++-
T Consensus 397 ~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TT--S~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIewIg 474 (866)
T COG4982 397 KVALVTGASKGSIAAAVVARLLAGGATVIATT--SRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEWIG 474 (866)
T ss_pred ceEEEecCCCcchHHHHHHHHHhCCcEEEEEc--ccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHHhc
Confidence 899999985 7799999999999999999874 33334445555555432 45677788999998888887753
Q ss_pred -----------------CCCcEEEEcCcccCccC-Cc--CChHHHHHHHHHHHHHHHHHHHHcCCC-------EEEEecc
Q 015080 144 -----------------NAFDAVMHFAAVAYVGE-ST--LDPLKYYHNITSNTLVVLESMARHGVD-------TLIYSST 196 (413)
Q Consensus 144 -----------------~~~dvvi~~Ag~~~~~~-~~--~~~~~~~~~n~~~~~~ll~~~~~~~~~-------~iV~~SS 196 (413)
..+|.+|-.|++...+. .. ...+..+++-+.....++-.+++.+.. ++|.-.|
T Consensus 475 ~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLPgS 554 (866)
T COG4982 475 DEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLPGS 554 (866)
T ss_pred cccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEecCC
Confidence 23788998888654332 11 223345666666677777777654322 4555555
Q ss_pred ceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhCC----CcEEEEeecceecC
Q 015080 197 CATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSD----MAVMILRYFNVIGS 253 (413)
Q Consensus 197 ~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g----i~~~~lrp~~v~G~ 253 (413)
-- . -.+..-..|+.+|++.+..+..++.|.+ +.++.-+.|++=|.
T Consensus 555 PN------r------G~FGgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGT 603 (866)
T COG4982 555 PN------R------GMFGGDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGT 603 (866)
T ss_pred CC------C------CccCCCcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeeccc
Confidence 11 0 0112245799999999999988887742 33343444555544
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00032 Score=62.07 Aligned_cols=111 Identities=24% Similarity=0.272 Sum_probs=70.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCC-------------------CCchhhhhhhhhcCCCCceEE
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSR-------------------GNIGAVKVLQELFPEPGRLQF 126 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~ 126 (413)
+.+ ++|+|.| .|++|+++++.|+..|. +++++|...- +.+.+.+.++++.+. -.++.
T Consensus 19 l~~-~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-v~i~~ 95 (202)
T TIGR02356 19 LLN-SHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSD-IQVTA 95 (202)
T ss_pred hcC-CCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCC-CEEEE
Confidence 445 7899999 69999999999999998 7999886521 122233444444332 34555
Q ss_pred EEccCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecC
Q 015080 127 IYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYG 201 (413)
Q Consensus 127 ~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~ 201 (413)
+..+++ .+.+.+++ .++|+||.+..- . ..-..+-+.+++.+. .+|+.++...+|
T Consensus 96 ~~~~i~-~~~~~~~~--~~~D~Vi~~~d~---------~--------~~r~~l~~~~~~~~i-p~i~~~~~g~~G 149 (202)
T TIGR02356 96 LKERVT-AENLELLI--NNVDLVLDCTDN---------F--------ATRYLINDACVALGT-PLISAAVVGFGG 149 (202)
T ss_pred ehhcCC-HHHHHHHH--hCCCEEEECCCC---------H--------HHHHHHHHHHHHcCC-CEEEEEeccCeE
Confidence 555554 35566777 678999987531 1 112235566677765 577777654443
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00082 Score=62.72 Aligned_cols=166 Identities=18% Similarity=0.126 Sum_probs=102.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
++|.|+|+ |+||+.++..|+.++ .+++++|+.....+..+..+.+.......-..+.+| .+.++ + .+.|+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~y~~----~--~~aDi 72 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GDYED----L--KGADI 72 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CChhh----h--cCCCE
Confidence 47899999 999999999998774 489999987444444443333322211111223333 23322 3 68899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc----eecCCCCCCCCCCCCCCCC-CChhHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTC----ATYGEPEKMPITEETPQAP-INPYGKA 223 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~----~~~~~~~~~~~~e~~~~~~-~~~Y~~s 223 (413)
|+-.||...- .-.+..+.++.|..-.+.+.+.+.+.+..-++.+-|- .+|-.. +....++ .-.-+.+
T Consensus 73 VvitAG~prK--pGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~~------k~sg~p~~rvig~gt 144 (313)
T COG0039 73 VVITAGVPRK--PGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIAM------KFSGFPKNRVIGSGT 144 (313)
T ss_pred EEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHHH------HhcCCCccceecccc
Confidence 9999997543 2356778999999999999999999876555555441 111000 0111111 1123444
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeecceecC
Q 015080 224 KKMAEDIILDFSKNSDMAVMILRYFNVIGS 253 (413)
Q Consensus 224 K~~~e~~~~~~~~~~gi~~~~lrp~~v~G~ 253 (413)
.+..-++-..++++.++....++ ++|.|.
T Consensus 145 ~LDsaR~~~~lae~~~v~~~~V~-~~ViGe 173 (313)
T COG0039 145 VLDSARFRTFLAEKLGVSPKDVH-AYVIGE 173 (313)
T ss_pred hHHHHHHHHHHHHHhCCChhHce-eeEecc
Confidence 45555666666777888877777 666773
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00095 Score=63.15 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=74.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCC--CCCchhhhhhhhhc-CCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLS--RGNIGAVKVLQELF-PEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~--~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
|+|.|+|++|.+|..++..|+..|. +|+++++.. ...+.....+.+.. ..+....+... +|. .+ + .+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~--~d~---~~-l--~~ 72 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKIS--SDL---SD-V--AG 72 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEEC--CCH---HH-h--CC
Confidence 5799999999999999999999987 599999843 22222221222111 11111211111 232 22 4 68
Q ss_pred CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 146 FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
.|+||-++|.... ...+..+.++.|..-.+.+.+.+.+.+.. .+|.+++
T Consensus 73 aDiViitag~p~~--~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n 122 (309)
T cd05294 73 SDIVIITAGVPRK--EGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN 122 (309)
T ss_pred CCEEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 8999999996432 22345678889999999999998887533 5666665
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.002 Score=60.78 Aligned_cols=164 Identities=12% Similarity=0.047 Sum_probs=101.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCC--CceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEP--GRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
+|.|.|+ |.||+.+|..|+..|. +++++|......+..+..+.+..... ..+.+... |.++ + .+.|
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~---~y~~----~--~~aD 70 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAG---DYDD----C--ADAD 70 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEEC---CHHH----h--CCCC
Confidence 4788897 9999999999998875 79999986555554444444432211 23444433 3332 3 6889
Q ss_pred EEEEcCcccCccCCcCC--hHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce----ecCCCCCCCCCCCCCCCCCChhH
Q 015080 148 AVMHFAAVAYVGESTLD--PLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA----TYGEPEKMPITEETPQAPINPYG 221 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~--~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~----~~~~~~~~~~~e~~~~~~~~~Y~ 221 (413)
+||-.||...-+ ..+ ..+.+..|..-.+.+.+.+.+.+..-++.+-|-- .|-. .+....++....+
T Consensus 71 ivvitaG~~~kp--g~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~------~k~sg~p~~rviG 142 (307)
T cd05290 71 IIVITAGPSIDP--GNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA------ATEFDYPANKVIG 142 (307)
T ss_pred EEEECCCCCCCC--CCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH------HHHhCcChhheec
Confidence 999999975322 123 4788999999999999999998755555544411 1100 0000111111222
Q ss_pred H-HHHHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 222 K-AKKMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 222 ~-sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
. +-+..-++-..+++..|++...++. +|.|..
T Consensus 143 ~gt~LDs~R~~~~la~~l~v~~~~V~~-~ViGeH 175 (307)
T cd05290 143 TGTMLDTARLRRIVADKYGVDPKNVTG-YVLGEH 175 (307)
T ss_pred ccchHHHHHHHHHHHHHhCCCcccEEE-EEEecC
Confidence 2 3344455555666668888888884 588865
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00026 Score=74.58 Aligned_cols=165 Identities=15% Similarity=0.156 Sum_probs=111.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCE-EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~~ 145 (413)
|..+|+||-|+.|.+|+.-|.++|++ +++.+|+.-+..--+..+......+-.+.+-..|++..+....+++. ..
T Consensus 1769 ksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~kl~~ 1848 (2376)
T KOG1202|consen 1769 KSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNKLGP 1848 (2376)
T ss_pred ceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhhccc
Confidence 78999999999999999999999996 55555543222223344444444455667777899988887777765 56
Q ss_pred CcEEEEcCcccCccCCcCChHHHHH----HHHHHHHHHHHHHHHcC--CCEEEEecccee-cCCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGESTLDPLKYYH----NITSNTLVVLESMARHG--VDTLIYSSTCAT-YGEPEKMPITEETPQAPIN 218 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~~~~~~----~n~~~~~~ll~~~~~~~--~~~iV~~SS~~~-~~~~~~~~~~e~~~~~~~~ 218 (413)
+--|||+|.+......++.....|+ .-+.+|.++=..-++.. .+.||.+||.+. -|+.. .+
T Consensus 1849 vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN~G------------Qt 1916 (2376)
T KOG1202|consen 1849 VGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGNAG------------QT 1916 (2376)
T ss_pred ccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCCCc------------cc
Confidence 7889999987654443333333332 34555666665555542 568888888553 33322 56
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEeec
Q 015080 219 PYGKAKKMAEDIILDFSKNSDMAVMILRYF 248 (413)
Q Consensus 219 ~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~ 248 (413)
-|+.+..++|+++++-.. .|++-+.+--|
T Consensus 1917 NYG~aNS~MERiceqRr~-~GfPG~AiQWG 1945 (2376)
T KOG1202|consen 1917 NYGLANSAMERICEQRRH-EGFPGTAIQWG 1945 (2376)
T ss_pred ccchhhHHHHHHHHHhhh-cCCCcceeeee
Confidence 799999999999987544 56665555443
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00032 Score=70.28 Aligned_cols=77 Identities=23% Similarity=0.258 Sum_probs=55.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
+.+ |+|+|+|+++ +|..+|+.|++.|++|+++++.. .+...+.+.++.. .++.++.+|..+. .. .++
T Consensus 3 ~~~-k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~--~~~~~~~~~~l~~--~~~~~~~~~~~~~-----~~--~~~ 69 (450)
T PRK14106 3 LKG-KKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKE--EDQLKEALEELGE--LGIELVLGEYPEE-----FL--EGV 69 (450)
T ss_pred cCC-CEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCc--hHHHHHHHHHHHh--cCCEEEeCCcchh-----Hh--hcC
Confidence 345 8999999766 99999999999999999998643 1223322333322 2567888888762 23 578
Q ss_pred cEEEEcCccc
Q 015080 147 DAVMHFAAVA 156 (413)
Q Consensus 147 dvvi~~Ag~~ 156 (413)
|+||+++|+.
T Consensus 70 d~vv~~~g~~ 79 (450)
T PRK14106 70 DLVVVSPGVP 79 (450)
T ss_pred CEEEECCCCC
Confidence 9999999863
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0013 Score=60.94 Aligned_cols=166 Identities=15% Similarity=0.111 Sum_probs=98.2
Q ss_pred EEEEcCCChHHHHHHHHHHHCC----CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 73 VLVTGGAGYIGSHAALRLLKDS----YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|.|+||+|.+|..++..|+..| .+|+++|++....+.....+++.........+... +| ..+.+ .+.|+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~--~d---~~~~~--~~aDi 73 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSIT--DD---PYEAF--KDADV 73 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEEC--Cc---hHHHh--CCCCE
Confidence 5789998999999999999999 79999998776655555555544322101122111 12 33445 68999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccce---ecCCCCCCCCCCCCCCCCCChhHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSSTCA---TYGEPEKMPITEETPQAPINPYGKAK 224 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS~~---~~~~~~~~~~~e~~~~~~~~~Y~~sK 224 (413)
||..+|....+ ..........|+.-.+.+.+.+.+.+.. .++.+|.-. .|-- ......++....+..-
T Consensus 74 Vv~t~~~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~------~~~sg~~~~kviG~~~ 145 (263)
T cd00650 74 VIITAGVGRKP--GMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV------WRYSGLPKEKVIGLGT 145 (263)
T ss_pred EEECCCCCCCc--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH------HHHhCCCchhEEEeec
Confidence 99999875332 2345667788999999999999988644 444554300 0000 0000011111111111
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 225 KMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 225 ~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
...-++...+++..+++..-++ +.|+|..
T Consensus 146 ld~~r~~~~la~~l~v~~~~v~-~~v~G~h 174 (263)
T cd00650 146 LDPIRFRRILAEKLGVDPDDVK-VYILGEH 174 (263)
T ss_pred chHHHHHHHHHHHhCCCccceE-EEEEEcC
Confidence 2233344445555778877888 8888864
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.58 E-value=9.6e-05 Score=60.92 Aligned_cols=78 Identities=19% Similarity=0.191 Sum_probs=51.5
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCE-EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSEN 144 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 144 (413)
++.+ ++++|.|+ |+.|+.++..|.+.|++ |+++.|+..+.+++.+. . . +..+.++.. .+.. +.+ .
T Consensus 9 ~l~~-~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~---~-~-~~~~~~~~~--~~~~---~~~--~ 74 (135)
T PF01488_consen 9 DLKG-KRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEE---F-G-GVNIEAIPL--EDLE---EAL--Q 74 (135)
T ss_dssp TGTT-SEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHH---H-T-GCSEEEEEG--GGHC---HHH--H
T ss_pred CcCC-CEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHH---c-C-ccccceeeH--HHHH---HHH--h
Confidence 3456 99999995 99999999999999996 99987654333333333 2 1 133444433 3332 444 5
Q ss_pred CCcEEEEcCcccC
Q 015080 145 AFDAVMHFAAVAY 157 (413)
Q Consensus 145 ~~dvvi~~Ag~~~ 157 (413)
.+|+||++.+...
T Consensus 75 ~~DivI~aT~~~~ 87 (135)
T PF01488_consen 75 EADIVINATPSGM 87 (135)
T ss_dssp TESEEEE-SSTTS
T ss_pred hCCeEEEecCCCC
Confidence 6899999987643
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00073 Score=61.03 Aligned_cols=110 Identities=20% Similarity=0.274 Sum_probs=69.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC-------------------CCCchhhhhhhhhcCCCCceEE
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-------------------RGNIGAVKVLQELFPEPGRLQF 126 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 126 (413)
+.+ ++|+|.| .|++|+++++.|+..|. +++++|... .+.+.+.+.++++.+. -++..
T Consensus 19 L~~-~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-~~i~~ 95 (228)
T cd00757 19 LKN-ARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPD-VEIEA 95 (228)
T ss_pred HhC-CcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCC-CEEEE
Confidence 445 7899999 69999999999999998 677775332 1122234444444433 45666
Q ss_pred EEccCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceec
Q 015080 127 IYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATY 200 (413)
Q Consensus 127 ~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~ 200 (413)
+..+++ .+.+.+++ .++|+||.+..- + ..-..+-+.+.+.+. .+|+.+....+
T Consensus 96 ~~~~i~-~~~~~~~~--~~~DvVi~~~d~---------~--------~~r~~l~~~~~~~~i-p~i~~g~~g~~ 148 (228)
T cd00757 96 YNERLD-AENAEELI--AGYDLVLDCTDN---------F--------ATRYLINDACVKLGK-PLVSGAVLGFE 148 (228)
T ss_pred ecceeC-HHHHHHHH--hCCCEEEEcCCC---------H--------HHHHHHHHHHHHcCC-CEEEEEeccCE
Confidence 666663 45666777 578999987641 1 112235566777765 57776654433
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00099 Score=54.86 Aligned_cols=107 Identities=24% Similarity=0.383 Sum_probs=70.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCC-------------------chhhhhhhhhcCCCCceEEEEcc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGN-------------------IGAVKVLQELFPEPGRLQFIYAD 130 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~D 130 (413)
++|+|.| .|++|+++++.|+..|. +++++|...=.. +.+.+.+++..+. .++..+..+
T Consensus 3 ~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~-~~v~~~~~~ 80 (135)
T PF00899_consen 3 KRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPD-VEVEAIPEK 80 (135)
T ss_dssp -EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTT-SEEEEEESH
T ss_pred CEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCc-eeeeeeecc
Confidence 7899999 69999999999999999 788887532111 1123344445443 567777778
Q ss_pred CCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceec
Q 015080 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATY 200 (413)
Q Consensus 131 l~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~ 200 (413)
+ +.+...+++ .++|+||.+..- ......+-+.+++.+. .+|+.++...+
T Consensus 81 ~-~~~~~~~~~--~~~d~vi~~~d~-----------------~~~~~~l~~~~~~~~~-p~i~~~~~g~~ 129 (135)
T PF00899_consen 81 I-DEENIEELL--KDYDIVIDCVDS-----------------LAARLLLNEICREYGI-PFIDAGVNGFY 129 (135)
T ss_dssp C-SHHHHHHHH--HTSSEEEEESSS-----------------HHHHHHHHHHHHHTT--EEEEEEEETTE
T ss_pred c-ccccccccc--cCCCEEEEecCC-----------------HHHHHHHHHHHHHcCC-CEEEEEeecCE
Confidence 7 555677777 578999987531 1223345667777765 77777765443
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0011 Score=65.06 Aligned_cols=167 Identities=10% Similarity=0.025 Sum_probs=100.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC---CC----EEEEEecC--CCCCchhhhhhhhhc-CCCCceEEEEccCCCHHHHHHH
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD---SY----RVTIVDNL--SRGNIGAVKVLQELF-PEPGRLQFIYADLGDAKAVNKF 140 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~---G~----~V~~~~r~--~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~ 140 (413)
-+|+||||+|.||++|+-.++.- |. .++++|.. ....+..+-.+.+.. +....+.+. .| +. +.
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~-~~--~~----ea 196 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT-TD--LD----VA 196 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE-EC--CH----HH
Confidence 67999999999999999999873 42 35666652 222222222232221 211223332 22 22 33
Q ss_pred hhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC--CEEEEecccee----cCCCCCCCCCCCC-C
Q 015080 141 FSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV--DTLIYSSTCAT----YGEPEKMPITEET-P 213 (413)
Q Consensus 141 ~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~iV~~SS~~~----~~~~~~~~~~e~~-~ 213 (413)
+ .++|+||-.||.... ...+..+.++.|..-.+.+.+.+.+... .+|+.+.|--+ |- ..... .
T Consensus 197 ~--~daDvvIitag~prk--~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i------~~k~apg 266 (452)
T cd05295 197 F--KDAHVIVLLDDFLIK--EGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSI------LIKYAPS 266 (452)
T ss_pred h--CCCCEEEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHH------HHHHcCC
Confidence 4 688999999997532 2346778899999999999999988765 56666664110 00 00001 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
.++....+.+....-++...++++.|++...|+-.+|.|..
T Consensus 267 iP~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeH 307 (452)
T cd05295 267 IPRKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNI 307 (452)
T ss_pred CCHHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEcc
Confidence 11222333333444455556666688988888878888864
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0016 Score=64.08 Aligned_cols=167 Identities=10% Similarity=0.077 Sum_probs=106.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-------CC--EEEEEecCCCCCchhhhhhhhhc-CCCCceEEEEccCCCHHHHHHH
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-------SY--RVTIVDNLSRGNIGAVKVLQELF-PEPGRLQFIYADLGDAKAVNKF 140 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-------G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~ 140 (413)
-+|.|+|++|.+|++++..|+.. |. ++++++++....+..+..+.+.. +...++.+. . .+.++
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~-~--~~ye~---- 173 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG-I--DPYEV---- 173 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe-c--CCHHH----
Confidence 57999999999999999999988 65 78888877666655555554432 211222222 2 23333
Q ss_pred hhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHH-cCCC-EEEEeccce---ecCCCCCCCCCCCCCCC
Q 015080 141 FSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMAR-HGVD-TLIYSSTCA---TYGEPEKMPITEETPQA 215 (413)
Q Consensus 141 ~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~-~~~~-~iV~~SS~~---~~~~~~~~~~~e~~~~~ 215 (413)
+ .+.|+||-.||.... ...+..+.++.|..-.+.+.+.+.+ .+.. .+|.+|.-. .|- ..+..+..
T Consensus 174 ~--kdaDiVVitAG~prk--pG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v------~~k~sg~~ 243 (444)
T PLN00112 174 F--QDAEWALLIGAKPRG--PGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALI------CLKNAPNI 243 (444)
T ss_pred h--CcCCEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHH------HHHHcCCC
Confidence 3 688999999997532 2356788999999999999999999 4533 555555411 110 00011111
Q ss_pred -CCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 216 -PINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 216 -~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
....=..+.+..-++-..++++.|++...|+-.+|.|..
T Consensus 244 ~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeH 283 (444)
T PLN00112 244 PAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNH 283 (444)
T ss_pred CcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecC
Confidence 122223334444555566666688888888777889864
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0026 Score=60.16 Aligned_cols=115 Identities=16% Similarity=0.099 Sum_probs=78.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
++|.|+|+ |.+|+.++..|+..|. +++++|.+..........+.+..+......+... .|+++ + .+.|+
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~--~dy~~----~--~~adi 74 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD--KDYSV----T--ANSKV 74 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC--CCHHH----h--CCCCE
Confidence 68999996 9999999999988865 7999987654444444444443321111222221 23332 3 68899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
||-+||...- ...+..+.+..|..-.+.+.+.+.+.+.. .++.+|.
T Consensus 75 vvitaG~~~k--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 75 VIVTAGARQN--EGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred EEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 9999997532 23456788999999999999999988644 5555554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0028 Score=51.12 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=57.7
Q ss_pred EEEEEcCCChHHHHHHHHHHHCC-CEEEEEecCCC-CCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSR-GNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G-~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
+|.|.||||++|++|++.|++.- .+++.+....+ .............. ...+.+.. .+.+.+ .++|+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~---~~~~~~------~~~Dvv 70 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKG-FEDLSVED---ADPEEL------SDVDVV 70 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTT-TEEEBEEE---TSGHHH------TTESEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhcccccc-ccceeEee---cchhHh------hcCCEE
Confidence 58999999999999999999973 36554433333 22333333221111 11222222 333332 578999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
|.|.+- ..+..+.+.+.+.|+ ++|=.|+..
T Consensus 71 f~a~~~------------------~~~~~~~~~~~~~g~-~ViD~s~~~ 100 (121)
T PF01118_consen 71 FLALPH------------------GASKELAPKLLKAGI-KVIDLSGDF 100 (121)
T ss_dssp EE-SCH------------------HHHHHHHHHHHHTTS-EEEESSSTT
T ss_pred EecCch------------------hHHHHHHHHHhhCCc-EEEeCCHHH
Confidence 988652 224567777777776 777777744
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0024 Score=60.26 Aligned_cols=114 Identities=17% Similarity=0.185 Sum_probs=75.1
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
+|.|+|++|.||++++..|+..+. +++++|++. ....+..+.+.. ....+..+. .+ +++.+.+ .+.|+|
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~---~~~~i~~~~-~~-~~~~~~~--~daDiv 71 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIP---TAASVKGFS-GE-EGLENAL--KGADVV 71 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCC---cCceEEEec-CC-CchHHHc--CCCCEE
Confidence 488999999999999999998875 799998755 222222222211 112222111 01 1123344 689999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCE-EEEecc
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT-LIYSST 196 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~-iV~~SS 196 (413)
|-+||.... ...+..+.+..|..-.+.+.+.+.+.+... +|.+|.
T Consensus 72 vitaG~~~~--~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 72 VIPAGVPRK--PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred EEeCCCCCC--CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 999997532 234677889999999999999999886544 455554
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00069 Score=65.74 Aligned_cols=101 Identities=19% Similarity=0.255 Sum_probs=64.2
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHH-hhcCCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKF-FSENAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~d 147 (413)
+|+|.|.||||++|.+|++.|.++ +++|+.+.+.....+..... .......|+.+.++++.. + .++|
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~---------~~~l~~~~~~~~~~~~~~~~--~~~D 106 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSV---------FPHLITQDLPNLVAVKDADF--SDVD 106 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhh---------CccccCccccceecCCHHHh--cCCC
Confidence 379999999999999999999999 67898887532221111111 111122344333333322 3 4789
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecC
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYG 201 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~ 201 (413)
+||.+.+- ..+..+++.+ +.+ .++|-.|+..-+.
T Consensus 107 vVf~Alp~------------------~~s~~i~~~~-~~g-~~VIDlSs~fRl~ 140 (381)
T PLN02968 107 AVFCCLPH------------------GTTQEIIKAL-PKD-LKIVDLSADFRLR 140 (381)
T ss_pred EEEEcCCH------------------HHHHHHHHHH-hCC-CEEEEcCchhccC
Confidence 99987642 1466677776 444 5899999977654
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0046 Score=59.33 Aligned_cols=115 Identities=19% Similarity=0.163 Sum_probs=78.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
++|.|+|+ |.||+.++..|+..|. +++++|.+.......+..+.+.........+.. + .|.++ + .+.|+
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~-~-~dy~~----~--~daDi 108 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILA-S-TDYAV----T--AGSDL 108 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEe-C-CCHHH----h--CCCCE
Confidence 58999995 9999999999998865 799999865544444444444322111222222 1 23332 3 68899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
||-+||...- ...+..+.+..|..-.+.+.+.+.+.+.. .+|.+|.
T Consensus 109 VVitAG~~~k--~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 109 CIVTAGARQI--PGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred EEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999997532 23456788999999999999999988644 4555553
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0049 Score=58.38 Aligned_cols=167 Identities=17% Similarity=0.101 Sum_probs=93.5
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcC-CCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
|++|.|.|| |.+|..++..|+..|. +|+++|++..........+.+... ......+ ... +|.+ .+ .+.|
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i-~~~-~d~~----~~--~~aD 72 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKI-TGT-NDYE----DI--AGSD 72 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEE-EeC-CCHH----HH--CCCC
Confidence 578999998 9999999999999875 999999855443222221222111 1111111 111 2322 23 6889
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccce---ecCCCCCCCCCCCCCCCCCChhHHH
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSSTCA---TYGEPEKMPITEETPQAPINPYGKA 223 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS~~---~~~~~~~~~~~e~~~~~~~~~Y~~s 223 (413)
+||.++|.... ......+.+..|..-.+.+++.+.+.... .+|.+|.-. +|--. +....++....|..
T Consensus 73 iVii~~~~p~~--~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~------~~s~~~~~~viG~g 144 (307)
T PRK06223 73 VVVITAGVPRK--PGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVAL------KESGFPKNRVIGMA 144 (307)
T ss_pred EEEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHH------HHhCCCcccEEEeC
Confidence 99999986432 22345567778888899999998887544 455555411 11000 00011111222221
Q ss_pred -HHHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 224 -KKMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 224 -K~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
-...-++-..+++..+++...++ +.|+|..
T Consensus 145 t~lds~r~~~~la~~l~v~~~~v~-~~viGeh 175 (307)
T PRK06223 145 GVLDSARFRTFIAEELNVSVKDVT-AFVLGGH 175 (307)
T ss_pred CCcHHHHHHHHHHHHhCcChhhCc-ccEEcCC
Confidence 12223444555555677776666 6677764
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0007 Score=73.07 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=56.2
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCC-CE-------------EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDS-YR-------------VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA 134 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G-~~-------------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 134 (413)
.||+|+|.|+ |+||+.+++.|++.. ++ |+++++.. +.+.+..+.. .++..+..|++|.
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~---~~a~~la~~~----~~~~~v~lDv~D~ 639 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL---KDAKETVEGI----ENAEAVQLDVSDS 639 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH---HHHHHHHHhc----CCCceEEeecCCH
Confidence 4689999995 999999999998763 33 66665433 2222222221 3577899999999
Q ss_pred HHHHHHhhcCCCcEEEEcCc
Q 015080 135 KAVNKFFSENAFDAVMHFAA 154 (413)
Q Consensus 135 ~~~~~~~~~~~~dvvi~~Ag 154 (413)
+++.+++ .++|+||++..
T Consensus 640 e~L~~~v--~~~DaVIsalP 657 (1042)
T PLN02819 640 ESLLKYV--SQVDVVISLLP 657 (1042)
T ss_pred HHHHHhh--cCCCEEEECCC
Confidence 9999988 56999999875
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0039 Score=56.86 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=68.5
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCc-------------------hhhhhhhhhcCCCCceE
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNI-------------------GAVKVLQELFPEPGRLQ 125 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~-------------------~~~~~~~~~~~~~~~~~ 125 (413)
.+.+ ++|+|.|+ |++|+++++.|+..|. +++++|...-... .+++.++++.+. -+++
T Consensus 29 ~L~~-~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~-v~i~ 105 (245)
T PRK05690 29 KLKA-ARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPH-IAIE 105 (245)
T ss_pred HhcC-CeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCC-CEEE
Confidence 3455 89999996 9999999999999997 6777765322211 123344444443 4566
Q ss_pred EEEccCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc
Q 015080 126 FIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTC 197 (413)
Q Consensus 126 ~~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~ 197 (413)
.+...++ .+.+.+++ .++|+||.+.. +. ..-..+-+.+.+.+. .+|+.++.
T Consensus 106 ~~~~~i~-~~~~~~~~--~~~DiVi~~~D---------~~--------~~r~~ln~~~~~~~i-p~v~~~~~ 156 (245)
T PRK05690 106 TINARLD-DDELAALI--AGHDLVLDCTD---------NV--------ATRNQLNRACFAAKK-PLVSGAAI 156 (245)
T ss_pred EEeccCC-HHHHHHHH--hcCCEEEecCC---------CH--------HHHHHHHHHHHHhCC-EEEEeeec
Confidence 6666665 44566667 67899998753 11 112235566777765 57765553
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0026 Score=56.63 Aligned_cols=111 Identities=22% Similarity=0.312 Sum_probs=70.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCC------------------CCchhhhhhhhhcCCCCceEEE
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSR------------------GNIGAVKVLQELFPEPGRLQFI 127 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 127 (413)
+.+ .+|+|.| .|++|+++++.|+..|. +++++|...- +.+.+.+.++++.+. -+++.+
T Consensus 26 L~~-~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~-v~v~~~ 102 (212)
T PRK08644 26 LKK-AKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPF-VEIEAH 102 (212)
T ss_pred HhC-CCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCC-CEEEEE
Confidence 334 7899999 59999999999999998 5888886521 111223344444333 456666
Q ss_pred EccCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccceecC
Q 015080 128 YADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-GVDTLIYSSTCATYG 201 (413)
Q Consensus 128 ~~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~iV~~SS~~~~~ 201 (413)
...+++ +.+.+++ .++|+||.+.. + ...-..+.+.+.+. +. .+|+.+....|+
T Consensus 103 ~~~i~~-~~~~~~~--~~~DvVI~a~D---------~--------~~~r~~l~~~~~~~~~~-p~I~~~~~~~~~ 156 (212)
T PRK08644 103 NEKIDE-DNIEELF--KDCDIVVEAFD---------N--------AETKAMLVETVLEHPGK-KLVAASGMAGYG 156 (212)
T ss_pred eeecCH-HHHHHHH--cCCCEEEECCC---------C--------HHHHHHHHHHHHHhCCC-CEEEeehhhccC
Confidence 666654 4556667 67899998742 1 12223455666666 54 577766554444
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0019 Score=63.01 Aligned_cols=108 Identities=23% Similarity=0.270 Sum_probs=69.5
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecC-------------------CCCCchhhhhhhhhcCCCCceEE
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNL-------------------SRGNIGAVKVLQELFPEPGRLQF 126 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 126 (413)
+.+ ++|+|.| .|++|++++..|+..|. +++++|.. ..+.+.+.+.++++.+. -.+..
T Consensus 133 l~~-~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-v~v~~ 209 (376)
T PRK08762 133 LLE-ARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPD-VQVEA 209 (376)
T ss_pred Hhc-CcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCC-CEEEE
Confidence 445 7899998 59999999999999998 78898875 12233344455555432 34555
Q ss_pred EEccCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 127 IYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 127 ~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
+...+++ +.+.+++ .++|+||++..- .. .-..+-+.+.+.++ .+|+.+...
T Consensus 210 ~~~~~~~-~~~~~~~--~~~D~Vv~~~d~---------~~--------~r~~ln~~~~~~~i-p~i~~~~~g 260 (376)
T PRK08762 210 VQERVTS-DNVEALL--QDVDVVVDGADN---------FP--------TRYLLNDACVKLGK-PLVYGAVFR 260 (376)
T ss_pred EeccCCh-HHHHHHH--hCCCEEEECCCC---------HH--------HHHHHHHHHHHcCC-CEEEEEecc
Confidence 5555543 4566677 578999988641 11 11124466777765 677776543
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.004 Score=58.97 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=73.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|.|.|+ |.+|..++..|+..| .+|+++|++..........+.............. .|.+ .+ .+.|+
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~---~d~~----~l--~~aDi 70 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA---GDYA----DC--KGADV 70 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee---CCHH----Hh--CCCCE
Confidence 36899996 999999999999999 5899999765443322222222211111222222 2332 24 68899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
||.+++.... ...+.......|..-.+.+.+.+.+.+..-++.+-|
T Consensus 71 Viita~~~~~--~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 71 VVITAGANQK--PGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred EEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9999986432 234566778889999999999998876444444433
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0022 Score=57.68 Aligned_cols=74 Identities=19% Similarity=0.317 Sum_probs=56.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHH-hhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKF-FSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~dvv 149 (413)
|+++|.| .|-+|+.+|+.|.+.|++|++++++.. ...+.+.. ......+.+|-+|++.++++ + .++|++
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g~~Vv~Id~d~~---~~~~~~~~----~~~~~~v~gd~t~~~~L~~agi--~~aD~v 70 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEGHNVVLIDRDEE---RVEEFLAD----ELDTHVVIGDATDEDVLEEAGI--DDADAV 70 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCCCceEEEEcCHH---HHHHHhhh----hcceEEEEecCCCHHHHHhcCC--CcCCEE
Confidence 5688888 599999999999999999999985433 22222221 14688899999999999887 4 678999
Q ss_pred EEcCc
Q 015080 150 MHFAA 154 (413)
Q Consensus 150 i~~Ag 154 (413)
+-.-+
T Consensus 71 va~t~ 75 (225)
T COG0569 71 VAATG 75 (225)
T ss_pred EEeeC
Confidence 86544
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0022 Score=61.84 Aligned_cols=109 Identities=19% Similarity=0.183 Sum_probs=70.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC-------------------CCCchhhhhhhhhcCCCCceEE
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-------------------RGNIGAVKVLQELFPEPGRLQF 126 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 126 (413)
+.+ .+|+|.|+ |++|+++++.|+..|. +++++|... .+.+.+++.++++.+. -.++.
T Consensus 26 L~~-~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~-v~v~~ 102 (355)
T PRK05597 26 LFD-AKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD-VKVTV 102 (355)
T ss_pred HhC-CeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC-cEEEE
Confidence 445 78999995 9999999999999998 688887643 1222234455555443 45666
Q ss_pred EEccCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccee
Q 015080 127 IYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCAT 199 (413)
Q Consensus 127 ~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~ 199 (413)
+...++. +...+++ .++|+||.+.. +. ..-..+-++|.+.++ .+|+.++...
T Consensus 103 ~~~~i~~-~~~~~~~--~~~DvVvd~~d---------~~--------~~r~~~n~~c~~~~i-p~v~~~~~g~ 154 (355)
T PRK05597 103 SVRRLTW-SNALDEL--RDADVILDGSD---------NF--------DTRHLASWAAARLGI-PHVWASILGF 154 (355)
T ss_pred EEeecCH-HHHHHHH--hCCCEEEECCC---------CH--------HHHHHHHHHHHHcCC-CEEEEEEecC
Confidence 6667654 4555666 67899998763 11 111224456677665 5777655433
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.003 Score=57.11 Aligned_cols=112 Identities=17% Similarity=0.272 Sum_probs=67.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCch--------------------hhhhhhhhcCCCCceE
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIG--------------------AVKVLQELFPEPGRLQ 125 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~--------------------~~~~~~~~~~~~~~~~ 125 (413)
+.+ .+|+|.| .|++|+++++.|+..|. +++++|...-.... +.+.++++.+. -.++
T Consensus 25 L~~-~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~-v~v~ 101 (231)
T PRK08328 25 LKK-AKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSD-IKIE 101 (231)
T ss_pred HhC-CcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCC-CEEE
Confidence 345 7899999 69999999999999998 68888743211111 11223333332 3455
Q ss_pred EEEccCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCC
Q 015080 126 FIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGE 202 (413)
Q Consensus 126 ~~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~ 202 (413)
.+...+ +.+.+.+++ .+.|+||.+..- .. .-..+-+.+.+.+. .+|+.++...+|.
T Consensus 102 ~~~~~~-~~~~~~~~l--~~~D~Vid~~d~---------~~--------~r~~l~~~~~~~~i-p~i~g~~~g~~G~ 157 (231)
T PRK08328 102 TFVGRL-SEENIDEVL--KGVDVIVDCLDN---------FE--------TRYLLDDYAHKKGI-PLVHGAVEGTYGQ 157 (231)
T ss_pred EEeccC-CHHHHHHHH--hcCCEEEECCCC---------HH--------HHHHHHHHHHHcCC-CEEEEeeccCEEE
Confidence 555555 345566677 578999877531 11 11123455667765 6787777665553
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.003 Score=60.06 Aligned_cols=115 Identities=18% Similarity=0.161 Sum_probs=75.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC-CEEEEEecCCCCCchhhhhhhhhcCC-CCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPE-PGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
++|.|+|| |.+|+.++..|+..| .+|+++|++....+...-.+...... +.... +.+ -+|.+ .+ .+.|+
T Consensus 6 ~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~-i~~-~~d~~----~l--~~ADi 76 (319)
T PTZ00117 6 KKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNIN-ILG-TNNYE----DI--KDSDV 76 (319)
T ss_pred cEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeE-EEe-CCCHH----Hh--CCCCE
Confidence 78999996 999999999999998 68999998654433222212221111 11112 221 12332 34 68899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCE-EEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT-LIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~-iV~~SS 196 (413)
||.+||.... ......+.+..|..-.+.+.+.+.+...+. +|++|.
T Consensus 77 VVitag~~~~--~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 77 VVITAGVQRK--EEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred EEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999987432 234566788889988999999999886554 666655
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0028 Score=57.61 Aligned_cols=111 Identities=18% Similarity=0.187 Sum_probs=68.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCC-------------------chhhhhhhhhcCCCCceEE
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGN-------------------IGAVKVLQELFPEPGRLQF 126 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~ 126 (413)
+.+ .+|+|.| .|++|++++..|+..|. +++++|...-.. +.+.+.++++.+. -.++.
T Consensus 22 L~~-~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~-v~i~~ 98 (240)
T TIGR02355 22 LKA-SRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPH-IAINP 98 (240)
T ss_pred HhC-CcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCC-cEEEE
Confidence 445 7899999 69999999999999997 677777543221 1123344444333 34555
Q ss_pred EEccCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecC
Q 015080 127 IYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYG 201 (413)
Q Consensus 127 ~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~ 201 (413)
+...++ .+.+.+++ .++|+||.+.. ++ ..-..+-+.+.+.++ .+|+.++...+|
T Consensus 99 ~~~~i~-~~~~~~~~--~~~DlVvd~~D---------~~--------~~r~~ln~~~~~~~i-p~v~~~~~g~~G 152 (240)
T TIGR02355 99 INAKLD-DAELAALI--AEHDIVVDCTD---------NV--------EVRNQLNRQCFAAKV-PLVSGAAIRMEG 152 (240)
T ss_pred EeccCC-HHHHHHHh--hcCCEEEEcCC---------CH--------HHHHHHHHHHHHcCC-CEEEEEecccEe
Confidence 554543 34566677 67899997753 11 112234466777765 577765544333
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0038 Score=55.02 Aligned_cols=110 Identities=24% Similarity=0.350 Sum_probs=69.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCC---------------------chhhhhhhhhcCCCCceEEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGN---------------------IGAVKVLQELFPEPGRLQFIY 128 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 128 (413)
.+|+|.|+ |++|.++++.|+..|. +++++|...-.. +.+.+.++++.+. -+++.+.
T Consensus 20 s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~-v~i~~~~ 97 (198)
T cd01485 20 AKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPN-VKLSIVE 97 (198)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCC-CEEEEEe
Confidence 78999995 6699999999999998 588887542111 1123334555443 4566666
Q ss_pred ccCCC-HHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCC
Q 015080 129 ADLGD-AKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGE 202 (413)
Q Consensus 129 ~Dl~d-~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~ 202 (413)
.++.+ .+...+++ ..+|+||.+.. +. .....+-+.+++.+. .+|+.++.+.||.
T Consensus 98 ~~~~~~~~~~~~~~--~~~dvVi~~~d---------~~--------~~~~~ln~~c~~~~i-p~i~~~~~G~~G~ 152 (198)
T cd01485 98 EDSLSNDSNIEEYL--QKFTLVIATEE---------NY--------ERTAKVNDVCRKHHI-PFISCATYGLIGY 152 (198)
T ss_pred cccccchhhHHHHH--hCCCEEEECCC---------CH--------HHHHHHHHHHHHcCC-CEEEEEeecCEEE
Confidence 66652 44556666 57899996632 11 112335566777776 6888887666653
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0025 Score=61.08 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=59.9
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCE---EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYR---VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
|++|+|.||||++|++|++.|.++|+. ++.+.+.....+.. . + .+......|+.+. .+ .++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l-~----~----~g~~i~v~d~~~~-----~~--~~v 64 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKEL-S----F----KGKELKVEDLTTF-----DF--SGV 64 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCee-e----e----CCceeEEeeCCHH-----HH--cCC
Confidence 478999999999999999999998774 46665432221111 1 1 1234444566542 23 478
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
|+||.++|.. .++.+++.+.+.|. .+|=.||..
T Consensus 65 DvVf~A~g~g------------------~s~~~~~~~~~~G~-~VIDlS~~~ 97 (334)
T PRK14874 65 DIALFSAGGS------------------VSKKYAPKAAAAGA-VVIDNSSAF 97 (334)
T ss_pred CEEEECCChH------------------HHHHHHHHHHhCCC-EEEECCchh
Confidence 9999887632 24456666666665 677677754
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.012 Score=56.07 Aligned_cols=117 Identities=13% Similarity=0.081 Sum_probs=75.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchh-hhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGA-VKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
++|.|.| +|.+|..++..++..|. +|+++|.+....... .+........+....+... +|.+ .+ .+.|+
T Consensus 7 ~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~--~d~~----~l--~~aDi 77 (321)
T PTZ00082 7 RKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGT--NNYE----DI--AGSDV 77 (321)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEEC--CCHH----Hh--CCCCE
Confidence 7899999 59999999999999995 899999766543221 1111111111112233221 2332 24 68899
Q ss_pred EEEcCcccCccCC---cCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 149 VMHFAAVAYVGES---TLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~---~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
||.+||....+.. +.+..+.+..|..-.+.+.+.+.+.... .++.+|.
T Consensus 78 VI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 78 VIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred EEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999997542211 1145667888998899999999988655 5666665
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0084 Score=56.52 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=76.4
Q ss_pred EEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 73 VLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|.|.|+ |.+|+.++..|+..| .+++++|++..........+.+.........+..+ .|.+ .+ .+.|+||
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~~~----~l--~~aDiVI 71 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GDYA----DA--ADADIVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CCHH----Hh--CCCCEEE
Confidence 467885 899999999999998 68999998665555555545444322112232222 2222 33 6899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
.+||.... ...+..+.+..|+.-.+.+.+.+++.+.. .++.+|.
T Consensus 72 itag~p~~--~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 72 ITAGAPRK--PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred EcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 99997432 23456778889999999999999988644 4555553
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0051 Score=57.12 Aligned_cols=163 Identities=11% Similarity=0.128 Sum_probs=94.5
Q ss_pred eEEEEEcC-CChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 71 THVLVTGG-AGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 71 k~vlITGa-sG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
..|+|.|. +-=|++.+|.-|-++|+-|+++..+... .+.++... ...+.....|..++.++...+.+ .
T Consensus 4 evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~ed----~~~ve~e~--~~dI~~L~ld~~~~~~~~~~l~~f~~~L~ 77 (299)
T PF08643_consen 4 EVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAED----EKYVESED--RPDIRPLWLDDSDPSSIHASLSRFASLLS 77 (299)
T ss_pred eEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHHH----HHHHHhcc--CCCCCCcccCCCCCcchHHHHHHHHHHhc
Confidence 68999995 7899999999999999999988643322 22222221 24577777777665544443332 1
Q ss_pred --------CCcEEEEcCcccCccC-------CcC-Ch---HHHHHHHHHH----HHHHHHHHHH---cCCCEEEEec-cc
Q 015080 145 --------AFDAVMHFAAVAYVGE-------STL-DP---LKYYHNITSN----TLVVLESMAR---HGVDTLIYSS-TC 197 (413)
Q Consensus 145 --------~~dvvi~~Ag~~~~~~-------~~~-~~---~~~~~~n~~~----~~~ll~~~~~---~~~~~iV~~S-S~ 197 (413)
...+..++.|+...+. .+. .. ...++.|+.. ++.+++.++. .+. ++|.+. |.
T Consensus 78 ~p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~~~~~~-~iil~~Psi 156 (299)
T PF08643_consen 78 RPHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSRSNQKS-KIILFNPSI 156 (299)
T ss_pred CCCCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-eEEEEeCch
Confidence 1223445555422111 111 12 2233334433 6778888887 344 555444 42
Q ss_pred eecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeeccee
Q 015080 198 ATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVI 251 (413)
Q Consensus 198 ~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~ 251 (413)
..- -..+...+-.....+.+.+...+.+| .+++++.++.|++-
T Consensus 157 ~ss-----------l~~PfhspE~~~~~al~~~~~~LrrEl~~~~I~V~~i~LG~l~ 202 (299)
T PF08643_consen 157 SSS-----------LNPPFHSPESIVSSALSSFFTSLRRELRPHNIDVTQIKLGNLD 202 (299)
T ss_pred hhc-----------cCCCccCHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEeeeec
Confidence 210 11111344566666777777777777 46999999999863
|
One of the proteins P32792 from SWISSPROT has been localised to the mitochondria []. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0041 Score=53.56 Aligned_cols=77 Identities=22% Similarity=0.283 Sum_probs=52.7
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCC------------------CCchhhhhhhhhcCCCCceEEEEccCC
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSR------------------GNIGAVKVLQELFPEPGRLQFIYADLG 132 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 132 (413)
+|+|.| .|++|+++++.|+..|. +++++|...- +.+.+.+.++++.+. -+++.+...++
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~-v~i~~~~~~~~ 78 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPF-VKIEAINIKID 78 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCC-CEEEEEEeecC
Confidence 488999 59999999999999999 5999987541 111223344444333 45656666664
Q ss_pred CHHHHHHHhhcCCCcEEEEcC
Q 015080 133 DAKAVNKFFSENAFDAVMHFA 153 (413)
Q Consensus 133 d~~~~~~~~~~~~~dvvi~~A 153 (413)
. +.+.+++ .++|+||.+.
T Consensus 79 ~-~~~~~~l--~~~DlVi~~~ 96 (174)
T cd01487 79 E-NNLEGLF--GDCDIVVEAF 96 (174)
T ss_pred h-hhHHHHh--cCCCEEEECC
Confidence 4 4566777 6789999874
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0029 Score=63.31 Aligned_cols=77 Identities=23% Similarity=0.213 Sum_probs=50.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
+.+ |+|+|||+++ +|.++++.|++.|++|++.++.........+.+.. .++.+..++. ...+ +. .++
T Consensus 3 ~~~-k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~-----~g~~~~~~~~--~~~~---~~-~~~ 69 (447)
T PRK02472 3 YQN-KKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLE-----EGIKVICGSH--PLEL---LD-EDF 69 (447)
T ss_pred cCC-CEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHh-----cCCEEEeCCC--CHHH---hc-CcC
Confidence 446 8999999866 99999999999999999988644332222233322 2344443321 1111 21 248
Q ss_pred cEEEEcCccc
Q 015080 147 DAVMHFAAVA 156 (413)
Q Consensus 147 dvvi~~Ag~~ 156 (413)
|+||+++|+.
T Consensus 70 d~vV~s~gi~ 79 (447)
T PRK02472 70 DLMVKNPGIP 79 (447)
T ss_pred CEEEECCCCC
Confidence 9999999975
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0063 Score=50.59 Aligned_cols=104 Identities=20% Similarity=0.291 Sum_probs=66.1
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCC-------------------CchhhhhhhhhcCCCCceEEEEccC
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRG-------------------NIGAVKVLQELFPEPGRLQFIYADL 131 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~Dl 131 (413)
+|+|.|+ |++|+++++.|+..|. +++++|...-. .+.+.+.++++.+. -.++.+..++
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~-v~i~~~~~~~ 78 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPG-VNVTAVPEGI 78 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCC-cEEEEEeeec
Confidence 4889995 9999999999999998 68888754211 11123344444332 4555666666
Q ss_pred CCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 132 ~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
.+.. ..+.+ .++|+||.+..- ......+-+.+++.+. .+|..++..
T Consensus 79 ~~~~-~~~~~--~~~diVi~~~d~-----------------~~~~~~l~~~~~~~~i-~~i~~~~~g 124 (143)
T cd01483 79 SEDN-LDDFL--DGVDLVIDAIDN-----------------IAVRRALNRACKELGI-PVIDAGGLG 124 (143)
T ss_pred Chhh-HHHHh--cCCCEEEECCCC-----------------HHHHHHHHHHHHHcCC-CEEEEcCCC
Confidence 5543 34555 678999977641 1223446677777765 577766644
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.002 Score=63.78 Aligned_cols=78 Identities=23% Similarity=0.218 Sum_probs=56.4
Q ss_pred CCCceEEEEEcC----------------CChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEcc
Q 015080 67 EEGVTHVLVTGG----------------AGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD 130 (413)
Q Consensus 67 ~~~~k~vlITGa----------------sG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D 130 (413)
+.| |+||||+| ||-.|.+||+.+..+|++|+++.-...- ..+.+++++.
T Consensus 254 l~g-kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~------------~~p~~v~~i~-- 318 (475)
T PRK13982 254 LAG-RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDL------------ADPQGVKVIH-- 318 (475)
T ss_pred cCC-CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCC------------CCCCCceEEE--
Confidence 557 89999975 6889999999999999999998643211 0134566654
Q ss_pred CCCHHHHHHHhhc-CCCcEEEEcCcccCcc
Q 015080 131 LGDAKAVNKFFSE-NAFDAVMHFAAVAYVG 159 (413)
Q Consensus 131 l~d~~~~~~~~~~-~~~dvvi~~Ag~~~~~ 159 (413)
+....++.+++++ .+.|++|++|++..+.
T Consensus 319 V~ta~eM~~av~~~~~~Di~I~aAAVaDyr 348 (475)
T PRK13982 319 VESARQMLAAVEAALPADIAIFAAAVADWR 348 (475)
T ss_pred ecCHHHHHHHHHhhCCCCEEEEecccccee
Confidence 4456666665544 4579999999986553
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.013 Score=53.03 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=77.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
-+|.|.||+|+||+.|...|..... +..+.|.. ........+.++.. .......+-++++++++ .+.|+
T Consensus 29 ~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~--~~~GVaaDlSHI~T-----~s~V~g~~g~~~L~~al--~~adv 99 (345)
T KOG1494|consen 29 LKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIA--NTPGVAADLSHINT-----NSSVVGFTGADGLENAL--KGADV 99 (345)
T ss_pred ceEEEEecCCccCccHHHHHhcCcccceeeeeecc--cCCcccccccccCC-----CCceeccCChhHHHHHh--cCCCE
Confidence 7899999999999999987765422 34455432 22222333322211 11223445567899999 78999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCE-EEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT-LIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~-iV~~SS 196 (413)
||--||+..- .--..++.|++|.--.+.+..++.+..... +.++|.
T Consensus 100 VvIPAGVPRK--PGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN 146 (345)
T KOG1494|consen 100 VVIPAGVPRK--PGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISN 146 (345)
T ss_pred EEecCCCCCC--CCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence 9999998542 234578899999999999999998885444 444443
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0058 Score=59.17 Aligned_cols=167 Identities=11% Similarity=0.089 Sum_probs=99.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-----EEE--EE--ecCCCCCchhhhhhhhhc-CCCCceEEEEccCCCHHHHHHH
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-----RVT--IV--DNLSRGNIGAVKVLQELF-PEPGRLQFIYADLGDAKAVNKF 140 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-----~V~--~~--~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~ 140 (413)
-+|.|+||+|.+|++++..|+..|. +|. ++ +++....+.....+.+.. +....+.+. . .+.++
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~-~--~~y~~---- 117 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG-I--DPYEV---- 117 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe-c--CCHHH----
Confidence 5799999999999999999998864 233 33 554444444333333322 111122222 2 23332
Q ss_pred hhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEeccce---ecCCCCCCCCCCCCCCC
Q 015080 141 FSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-V-DTLIYSSTCA---TYGEPEKMPITEETPQA 215 (413)
Q Consensus 141 ~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~iV~~SS~~---~~~~~~~~~~~e~~~~~ 215 (413)
+ .+.|+||-.||.... ...+..+.++.|+.-.+.+.+.+.+.. . ..+|.+|.-. .|- ..+..+..
T Consensus 118 ~--kdaDIVVitAG~prk--pg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v------~~k~sg~~ 187 (387)
T TIGR01757 118 F--EDADWALLIGAKPRG--PGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALI------AMKNAPNI 187 (387)
T ss_pred h--CCCCEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHH------HHHHcCCC
Confidence 3 688999999997532 245677899999999999999999843 3 3555555411 110 00001111
Q ss_pred C-CChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 216 P-INPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 216 ~-~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
| ...=+.+.+..-++...++++.+++...++-.+|.|..
T Consensus 188 ~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeH 227 (387)
T TIGR01757 188 PRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNH 227 (387)
T ss_pred cccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecC
Confidence 1 11123344455555666666678888877777888864
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00063 Score=62.81 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=56.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
..++|-||+||.|.-++++|+.+|.+-.+..|+..+...+.. .+ +..+.. .++-++..+++.+ ...++|+
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~---~L---G~~~~~--~p~~~p~~~~~~~--~~~~VVl 76 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRA---SL---GPEAAV--FPLGVPAALEAMA--SRTQVVL 76 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHH---hc---Cccccc--cCCCCHHHHHHHH--hcceEEE
Confidence 579999999999999999999999988776655443333222 22 233333 3444588888888 7899999
Q ss_pred EcCccc
Q 015080 151 HFAAVA 156 (413)
Q Consensus 151 ~~Ag~~ 156 (413)
||+|..
T Consensus 77 ncvGPy 82 (382)
T COG3268 77 NCVGPY 82 (382)
T ss_pred eccccc
Confidence 999975
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00092 Score=63.35 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=30.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~ 105 (413)
++|.|+| .|.+|..++..|++.|++|++++++..
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 6799999 799999999999999999999987643
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0034 Score=62.87 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=55.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHH-hhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKF-FSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~dvv 149 (413)
|+|+|.|+ |.+|+++++.|.+.|++|++++++... .+.+.+ ..++.++.+|.++.+.+.++ + .++|.|
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~----~~~~~~----~~~~~~~~gd~~~~~~l~~~~~--~~a~~v 69 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEER----LRRLQD----RLDVRTVVGNGSSPDVLREAGA--EDADLL 69 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHH----HHHHHh----hcCEEEEEeCCCCHHHHHHcCC--CcCCEE
Confidence 46899996 999999999999999999999764332 222221 13578899999999988877 5 678988
Q ss_pred EEcC
Q 015080 150 MHFA 153 (413)
Q Consensus 150 i~~A 153 (413)
|-+.
T Consensus 70 i~~~ 73 (453)
T PRK09496 70 IAVT 73 (453)
T ss_pred EEec
Confidence 8654
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0056 Score=59.33 Aligned_cols=83 Identities=25% Similarity=0.315 Sum_probs=56.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCC-------------------CCchhhhhhhhhcCCCCceE
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSR-------------------GNIGAVKVLQELFPEPGRLQ 125 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~ 125 (413)
.+.+ .+|+|.| .|++|.+++..|+..|. +++++|...= +.+.+.+.++++.+. -+++
T Consensus 38 ~l~~-~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~-v~i~ 114 (370)
T PRK05600 38 RLHN-ARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPD-IRVN 114 (370)
T ss_pred HhcC-CcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCC-CeeE
Confidence 3445 7899999 59999999999999997 7888876421 111223344444332 4566
Q ss_pred EEEccCCCHHHHHHHhhcCCCcEEEEcCc
Q 015080 126 FIYADLGDAKAVNKFFSENAFDAVMHFAA 154 (413)
Q Consensus 126 ~~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag 154 (413)
.+...++ .+.+.+++ .++|+||.|..
T Consensus 115 ~~~~~i~-~~~~~~~~--~~~DlVid~~D 140 (370)
T PRK05600 115 ALRERLT-AENAVELL--NGVDLVLDGSD 140 (370)
T ss_pred EeeeecC-HHHHHHHH--hCCCEEEECCC
Confidence 6666665 44566677 67899998753
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0047 Score=59.35 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=59.2
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEE-EccCCCHHHHHHHhhcCCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFI-YADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~d 147 (413)
|++|+|.||||++|+++++.|.+. +++++.+.+.....+...+... .+..+ ..++.+.+.. .. .++|
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~-------~~~~~~~~~~~~~~~~--~~--~~vD 70 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHP-------HLRGLVDLVLEPLDPE--IL--AGAD 70 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCc-------ccccccCceeecCCHH--Hh--cCCC
Confidence 489999999999999999999987 6788776542222111211111 01111 1122222221 22 4689
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceec
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATY 200 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~ 200 (413)
+||-|... .....+++.+.+.| .++|=.|+..-+
T Consensus 71 ~Vf~alP~------------------~~~~~~v~~a~~aG-~~VID~S~~fR~ 104 (343)
T PRK00436 71 VVFLALPH------------------GVSMDLAPQLLEAG-VKVIDLSADFRL 104 (343)
T ss_pred EEEECCCc------------------HHHHHHHHHHHhCC-CEEEECCcccCC
Confidence 99876531 11344666666665 488888886644
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0081 Score=60.13 Aligned_cols=119 Identities=17% Similarity=0.131 Sum_probs=73.2
Q ss_pred EEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEEEcC-
Q 015080 75 VTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMHFA- 153 (413)
Q Consensus 75 ITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi~~A- 153 (413)
|+||+|++|.++++.|...|++|+...+..... +. ....+++.+++-+
T Consensus 43 l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~----------------------~~---------~~~~~~~~~~~d~~ 91 (450)
T PRK08261 43 LVGGAGRLAEALAALLAGLGYDVVANNDGGLTW----------------------AA---------GWGDRFGALVFDAT 91 (450)
T ss_pred EEccCchhHHHHHHHHhhCCCeeeecCcccccc----------------------cc---------CcCCcccEEEEECC
Confidence 888899999999999999999999864321100 00 0012344333322
Q ss_pred cccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q 015080 154 AVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILD 233 (413)
Q Consensus 154 g~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~ 233 (413)
++. .++.... -......+++.+.. .++||+++|..... ....|+.+|++.+.+++.
T Consensus 92 ~~~-------~~~~l~~-~~~~~~~~l~~l~~--~griv~i~s~~~~~--------------~~~~~~~akaal~gl~rs 147 (450)
T PRK08261 92 GIT-------DPADLKA-LYEFFHPVLRSLAP--CGRVVVLGRPPEAA--------------ADPAAAAAQRALEGFTRS 147 (450)
T ss_pred CCC-------CHHHHHH-HHHHHHHHHHhccC--CCEEEEEccccccC--------------CchHHHHHHHHHHHHHHH
Confidence 211 1222111 12233444555433 36999999965431 123599999999999999
Q ss_pred HHhh--CCCcEEEEeec
Q 015080 234 FSKN--SDMAVMILRYF 248 (413)
Q Consensus 234 ~~~~--~gi~~~~lrp~ 248 (413)
+++| .++++..+.|+
T Consensus 148 la~E~~~gi~v~~i~~~ 164 (450)
T PRK08261 148 LGKELRRGATAQLVYVA 164 (450)
T ss_pred HHHHhhcCCEEEEEecC
Confidence 9988 57888888774
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0092 Score=53.79 Aligned_cols=107 Identities=18% Similarity=0.200 Sum_probs=65.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCC-------------------CchhhhhhhhhcCCCCceEE
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRG-------------------NIGAVKVLQELFPEPGRLQF 126 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~-------------------~~~~~~~~~~~~~~~~~~~~ 126 (413)
+.+ .+|+|.| .|++|+++++.|+..|. +++++|...-. .+.+.+.+.++.+. -.++.
T Consensus 9 L~~-~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~-~~V~~ 85 (231)
T cd00755 9 LRN-AHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE-CEVDA 85 (231)
T ss_pred HhC-CCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC-cEEEE
Confidence 334 7899999 69999999999999998 78888753211 11123444444432 45555
Q ss_pred EEccCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 127 IYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 127 ~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
+...++ ++...+++. .++|+||.+..- ...-..+.+.+.+.++ .+|...+
T Consensus 86 ~~~~i~-~~~~~~l~~-~~~D~VvdaiD~-----------------~~~k~~L~~~c~~~~i-p~I~s~g 135 (231)
T cd00755 86 VEEFLT-PDNSEDLLG-GDPDFVVDAIDS-----------------IRAKVALIAYCRKRKI-PVISSMG 135 (231)
T ss_pred eeeecC-HhHHHHHhc-CCCCEEEEcCCC-----------------HHHHHHHHHHHHHhCC-CEEEEeC
Confidence 555554 344555553 368999987531 1222346677877765 4554433
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0064 Score=57.20 Aligned_cols=108 Identities=24% Similarity=0.272 Sum_probs=66.7
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCC-------------------chhhhhhhhhcCCCCceEEEEccC
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGN-------------------IGAVKVLQELFPEPGRLQFIYADL 131 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~Dl 131 (413)
+|||.|+ |++|.++++.|+..|. +++++|...-.. +.+++.++++.+. -.+..+..++
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~-v~V~~~~~~i 78 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPN-VKIVAYHANI 78 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCC-CeEEEEeccC
Confidence 4899994 9999999999999998 678877532211 1223334444332 4566677777
Q ss_pred CCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecC
Q 015080 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYG 201 (413)
Q Consensus 132 ~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~ 201 (413)
++.....+++ .++|+||.+.- + ...-..+-+.+.+.++ .+|..++.+.+|
T Consensus 79 ~~~~~~~~f~--~~~DvVv~a~D---------n--------~~ar~~in~~c~~~~i-p~I~~gt~G~~G 128 (312)
T cd01489 79 KDPDFNVEFF--KQFDLVFNALD---------N--------LAARRHVNKMCLAADV-PLIESGTTGFLG 128 (312)
T ss_pred CCccchHHHH--hcCCEEEECCC---------C--------HHHHHHHHHHHHHCCC-CEEEEecCccee
Confidence 7653344566 57899987642 1 1222334455666664 567766655443
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0015 Score=60.90 Aligned_cols=74 Identities=22% Similarity=0.367 Sum_probs=48.3
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCC-CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
.+ ++++|+|+ |++|++++..|.+.| .+|++++|+..+.+++.+.+.. . ..+.+ ++ +..+.+ ...
T Consensus 122 ~~-k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~---~-~~~~~---~~----~~~~~~--~~~ 186 (278)
T PRK00258 122 KG-KRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA---L-GKAEL---DL----ELQEEL--ADF 186 (278)
T ss_pred CC-CEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh---c-cceee---cc----cchhcc--ccC
Confidence 35 88999996 999999999999999 6899998765433333333221 1 11121 21 112334 568
Q ss_pred cEEEEcCccc
Q 015080 147 DAVMHFAAVA 156 (413)
Q Consensus 147 dvvi~~Ag~~ 156 (413)
|+|||+....
T Consensus 187 DivInaTp~g 196 (278)
T PRK00258 187 DLIINATSAG 196 (278)
T ss_pred CEEEECCcCC
Confidence 9999998654
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.021 Score=50.40 Aligned_cols=80 Identities=21% Similarity=0.285 Sum_probs=54.5
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecC---CCCCch---------------hhhhhhhhcCCCCceEEE
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNL---SRGNIG---------------AVKVLQELFPEPGRLQFI 127 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~---~~~~~~---------------~~~~~~~~~~~~~~~~~~ 127 (413)
+.. ++|+|.|+ |++|+.++..|+..|. +|+++|.. ..+... +.+.++++.+. .+++.+
T Consensus 19 L~~-~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~-~~i~~~ 95 (200)
T TIGR02354 19 LEQ-ATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPY-TEIEAY 95 (200)
T ss_pred HhC-CcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCC-CEEEEe
Confidence 345 78999995 9999999999999999 69999876 211111 12233333332 456666
Q ss_pred EccCCCHHHHHHHhhcCCCcEEEEc
Q 015080 128 YADLGDAKAVNKFFSENAFDAVMHF 152 (413)
Q Consensus 128 ~~Dl~d~~~~~~~~~~~~~dvvi~~ 152 (413)
..+++ .+.+.+++ .++|+||.+
T Consensus 96 ~~~i~-~~~~~~~~--~~~DlVi~a 117 (200)
T TIGR02354 96 DEKIT-EENIDKFF--KDADIVCEA 117 (200)
T ss_pred eeeCC-HhHHHHHh--cCCCEEEEC
Confidence 66765 45667777 678999977
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0079 Score=52.94 Aligned_cols=110 Identities=19% Similarity=0.302 Sum_probs=68.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCC-------------------CchhhhhhhhhcCCCCceEE
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRG-------------------NIGAVKVLQELFPEPGRLQF 126 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~-------------------~~~~~~~~~~~~~~~~~~~~ 126 (413)
+.+ ++|+|.|+ |++|.++++.|+..|. +++++|...-. .+.+.+.++++.+. -.++.
T Consensus 19 L~~-s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~-v~i~~ 95 (197)
T cd01492 19 LRS-ARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPR-VKVSV 95 (197)
T ss_pred HHh-CcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCC-CEEEE
Confidence 334 78999984 6699999999999998 58888754211 11233445555443 45666
Q ss_pred EEccCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecC
Q 015080 127 IYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYG 201 (413)
Q Consensus 127 ~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~ 201 (413)
+...+++ ...+.+ .++|+||.+.. +.. ....+-+.+++.++ .+|+.++...+|
T Consensus 96 ~~~~~~~--~~~~~~--~~~dvVi~~~~---------~~~--------~~~~ln~~c~~~~i-p~i~~~~~G~~G 148 (197)
T cd01492 96 DTDDISE--KPEEFF--SQFDVVVATEL---------SRA--------ELVKINELCRKLGV-KFYATGVHGLFG 148 (197)
T ss_pred EecCccc--cHHHHH--hCCCEEEECCC---------CHH--------HHHHHHHHHHHcCC-CEEEEEecCCEE
Confidence 6655552 234455 57899996642 111 12234466777776 577777755554
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0019 Score=54.46 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=46.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC-CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
++++|+|+ |.+|..+++.|.+.| ++|++++|+..+.++..+.+. . ..+..+..+.++ ++ .++|+|
T Consensus 20 ~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~---~-----~~~~~~~~~~~~---~~--~~~Dvv 85 (155)
T cd01065 20 KKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFG---E-----LGIAIAYLDLEE---LL--AEADLI 85 (155)
T ss_pred CEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh---h-----cccceeecchhh---cc--ccCCEE
Confidence 78999996 999999999999996 789998765433222222211 1 001233344332 24 678999
Q ss_pred EEcCccc
Q 015080 150 MHFAAVA 156 (413)
Q Consensus 150 i~~Ag~~ 156 (413)
|++....
T Consensus 86 i~~~~~~ 92 (155)
T cd01065 86 INTTPVG 92 (155)
T ss_pred EeCcCCC
Confidence 9998654
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0071 Score=55.96 Aligned_cols=109 Identities=15% Similarity=0.193 Sum_probs=67.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCC-------------------CCchhhhhhhhhcCCCCceEE
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSR-------------------GNIGAVKVLQELFPEPGRLQF 126 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~ 126 (413)
+.+ .+|+|.| .|++|++++..|+..|. +++++|...= +.+.+++.++++.+. -+++.
T Consensus 25 L~~-s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~-v~V~~ 101 (287)
T PRK08223 25 LRN-SRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPE-LEIRA 101 (287)
T ss_pred Hhc-CCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCC-CEEEE
Confidence 445 7899999 59999999999999998 6777775421 111123344444443 45666
Q ss_pred EEccCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc
Q 015080 127 IYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTC 197 (413)
Q Consensus 127 ~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~ 197 (413)
+...++. +.+.+++ .++|+||.+.- +. ++..-..+-++|.+.++ .+|+.|..
T Consensus 102 ~~~~l~~-~n~~~ll--~~~DlVvD~~D---------~~------~~~~r~~ln~~c~~~~i-P~V~~~~~ 153 (287)
T PRK08223 102 FPEGIGK-ENADAFL--DGVDVYVDGLD---------FF------EFDARRLVFAACQQRGI-PALTAAPL 153 (287)
T ss_pred EecccCc-cCHHHHH--hCCCEEEECCC---------CC------cHHHHHHHHHHHHHcCC-CEEEEecc
Confidence 6666654 3456667 67899986542 10 01112335567777775 56776543
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.01 Score=53.50 Aligned_cols=108 Identities=20% Similarity=0.228 Sum_probs=66.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCch-------------------hhhhhhhhcCCCCceEEEEccC
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIG-------------------AVKVLQELFPEPGRLQFIYADL 131 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~Dl 131 (413)
+|||.| .|++|.++++.|+..|. +++++|...=.... +.+.+++..+. -++..+..++
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~-v~i~~~~~~i 78 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPN-CKVVPYQNKV 78 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCC-CEEEEEeccC
Confidence 488989 69999999999999998 67777754211111 22333444332 4566677777
Q ss_pred CCHHHH-HHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecC
Q 015080 132 GDAKAV-NKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYG 201 (413)
Q Consensus 132 ~d~~~~-~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~ 201 (413)
++.+.. .+++ .++|+||.+.. |...-..+-+.+.+.++ .+|..++.+.+|
T Consensus 79 ~~~~~~~~~f~--~~~DvVi~a~D-----------------n~~aR~~ln~~c~~~~i-plI~~g~~G~~G 129 (234)
T cd01484 79 GPEQDFNDTFF--EQFHIIVNALD-----------------NIIARRYVNGMLIFLIV-PLIESGTEGFKG 129 (234)
T ss_pred ChhhhchHHHH--hCCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEcccCCce
Confidence 654433 3455 57899987642 22223345556666664 577777655444
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.012 Score=54.18 Aligned_cols=109 Identities=19% Similarity=0.282 Sum_probs=65.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCc-------------------hhhhhhhhhcCCCCceEE
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNI-------------------GAVKVLQELFPEPGRLQF 126 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 126 (413)
+.+ .+|+|.| .|++|+++++.|+..|. +++++|...-... ...+.+.++.+. ..+..
T Consensus 28 L~~-s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~-~~V~~ 104 (268)
T PRK15116 28 FAD-AHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPE-CRVTV 104 (268)
T ss_pred hcC-CCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCC-cEEEE
Confidence 445 7899999 69999999999999994 7888875421111 123334444332 33444
Q ss_pred EEccCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 127 IYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 127 ~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
+. +.-+++.+.+++. .++|+||.+.... ..-..+.+.+++.++ .+|.+..++
T Consensus 105 i~-~~i~~e~~~~ll~-~~~D~VIdaiD~~-----------------~~k~~L~~~c~~~~i-p~I~~gGag 156 (268)
T PRK15116 105 VD-DFITPDNVAEYMS-AGFSYVIDAIDSV-----------------RPKAALIAYCRRNKI-PLVTTGGAG 156 (268)
T ss_pred Ee-cccChhhHHHHhc-CCCCEEEEcCCCH-----------------HHHHHHHHHHHHcCC-CEEEECCcc
Confidence 43 2334556666662 3689999876421 122346777887765 455554433
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0046 Score=60.67 Aligned_cols=77 Identities=16% Similarity=0.115 Sum_probs=51.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH----HHHHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA----KAVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~----~~~~~~~~~~~~ 146 (413)
|+|||||++..+|.++++.|.+.|++|++++..........+.+ .....+...-.+. +.+.+++++.++
T Consensus 5 ~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~-------d~~~~~p~p~~d~~~~~~~L~~i~~~~~i 77 (389)
T PRK06849 5 KTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAV-------DGFYTIPSPRWDPDAYIQALLSIVQRENI 77 (389)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhh-------hheEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence 89999999999999999999999999999986432221111111 1222221122333 455566667889
Q ss_pred cEEEEcCc
Q 015080 147 DAVMHFAA 154 (413)
Q Consensus 147 dvvi~~Ag 154 (413)
|+||-...
T Consensus 78 d~vIP~~e 85 (389)
T PRK06849 78 DLLIPTCE 85 (389)
T ss_pred CEEEECCh
Confidence 99997664
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.013 Score=55.45 Aligned_cols=115 Identities=15% Similarity=0.167 Sum_probs=71.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCC-CCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPE-PGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|.|.|+ |.+|..+|..|+..|. +|+++|............+.+.... ..... +.. -+|. ++ + .+.|+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~-i~~-t~d~---~~-~--~~aDi 72 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTK-VTG-TNNY---AD-T--ANSDI 72 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcE-EEe-cCCH---HH-h--CCCCE
Confidence 57899995 9999999999999886 8999997433222111111111000 00111 111 0222 22 3 57899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
||-+||.... ...+..+.+..|..-.+.+++.+.+.+.. .+|.+|.
T Consensus 73 VIitag~p~~--~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 73 VVITAGLPRK--PGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred EEEcCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999996432 23355678889999999999998887533 5555555
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0028 Score=58.81 Aligned_cols=72 Identities=22% Similarity=0.285 Sum_probs=47.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+++|+|+ |++|++++..|++.|++|++++|+..+.++..+.+.. . ..+.....| + ... .++|+||
T Consensus 118 k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~---~-~~~~~~~~~--~-----~~~--~~~DivI 183 (270)
T TIGR00507 118 QRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQR---Y-GEIQAFSMD--E-----LPL--HRVDLII 183 (270)
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhh---c-CceEEechh--h-----hcc--cCccEEE
Confidence 78999997 8999999999999999999988754433333333221 1 112222111 1 112 4689999
Q ss_pred EcCccc
Q 015080 151 HFAAVA 156 (413)
Q Consensus 151 ~~Ag~~ 156 (413)
|+.+..
T Consensus 184 natp~g 189 (270)
T TIGR00507 184 NATSAG 189 (270)
T ss_pred ECCCCC
Confidence 999864
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0061 Score=58.66 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=58.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-CCEEEEE-ecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-SYRVTIV-DNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
++|.|.||||++|.++++.|.+. +++++.+ +......+...+....+ .... ..++.+. +.++++ .++|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l----~~~~--~~~~~~~-~~~~~~--~~~Dv 71 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHL----RGLV--DLNLEPI-DEEEIA--EDADV 71 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccc----cccC--CceeecC-CHHHhh--cCCCE
Confidence 47999999999999999999987 6677743 42211111111111111 0100 0111111 123333 36899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceec
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATY 200 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~ 200 (413)
||.|..-. ....+++.+.+.| .++|=.|+..=+
T Consensus 72 Vf~alP~~------------------~s~~~~~~~~~~G-~~VIDlS~~fR~ 104 (346)
T TIGR01850 72 VFLALPHG------------------VSAELAPELLAAG-VKVIDLSADFRL 104 (346)
T ss_pred EEECCCch------------------HHHHHHHHHHhCC-CEEEeCChhhhc
Confidence 99876421 2456777777776 589999986543
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.013 Score=57.36 Aligned_cols=111 Identities=20% Similarity=0.242 Sum_probs=67.5
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCc-------------------hhhhhhhhhcCCCCceEE
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNI-------------------GAVKVLQELFPEPGRLQF 126 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 126 (413)
+.+ .+|+|.| .|++|++++..|+..|. +++++|...-... .+.+.+.++.+. -+++.
T Consensus 40 L~~-~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~-v~i~~ 116 (392)
T PRK07878 40 LKN-ARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPL-VNVRL 116 (392)
T ss_pred Hhc-CCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCC-cEEEE
Confidence 345 7899999 59999999999999998 6777774321111 122333444332 34555
Q ss_pred EEccCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecC
Q 015080 127 IYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYG 201 (413)
Q Consensus 127 ~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~ 201 (413)
+...++. +...+++ .++|+||.+.. + ...-..+-++|.+.++ .+|+.+....+|
T Consensus 117 ~~~~i~~-~~~~~~~--~~~D~Vvd~~d---------~--------~~~r~~ln~~~~~~~~-p~v~~~~~g~~G 170 (392)
T PRK07878 117 HEFRLDP-SNAVELF--SQYDLILDGTD---------N--------FATRYLVNDAAVLAGK-PYVWGSIYRFEG 170 (392)
T ss_pred EeccCCh-hHHHHHH--hcCCEEEECCC---------C--------HHHHHHHHHHHHHcCC-CEEEEEeccCEE
Confidence 6666654 3456666 67899997652 1 1112224456666665 577776655444
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.011 Score=59.22 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=54.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
++++|.|+ |.+|+.+++.|.+.|++|++++++... .+.+.+. ..++.++.+|.++++.++++-- .++|.||
T Consensus 232 ~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~----~~~~~~~---~~~~~~i~gd~~~~~~L~~~~~-~~a~~vi 302 (453)
T PRK09496 232 KRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPER----AEELAEE---LPNTLVLHGDGTDQELLEEEGI-DEADAFI 302 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHH----HHHHHHH---CCCCeEEECCCCCHHHHHhcCC-ccCCEEE
Confidence 88999996 999999999999999999999754322 2222221 2467789999999988865532 5688887
Q ss_pred Ec
Q 015080 151 HF 152 (413)
Q Consensus 151 ~~ 152 (413)
-+
T Consensus 303 ~~ 304 (453)
T PRK09496 303 AL 304 (453)
T ss_pred EC
Confidence 44
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0068 Score=57.86 Aligned_cols=95 Identities=14% Similarity=0.184 Sum_probs=56.0
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCE---EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYR---VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
|++|.|+||||++|.+|++.|.++++. +..+.. .++.. +.+. . .+. ..++.+.+.. + + .++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s-~~~aG---~~l~-~----~~~---~l~~~~~~~~-~-~--~~v 67 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLAS-SESAG---HSVP-F----AGK---NLRVREVDSF-D-F--SQV 67 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEEC-cccCC---Ceec-c----CCc---ceEEeeCChH-H-h--cCC
Confidence 478999999999999999999987663 334432 22211 1111 0 111 1222222211 1 3 478
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccee
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCAT 199 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~ 199 (413)
|+||.+++.. ....+++.+.+.|+ ++|=.||..-
T Consensus 68 D~vFla~p~~------------------~s~~~v~~~~~~G~-~VIDlS~~fR 101 (336)
T PRK05671 68 QLAFFAAGAA------------------VSRSFAEKARAAGC-SVIDLSGALP 101 (336)
T ss_pred CEEEEcCCHH------------------HHHHHHHHHHHCCC-eEEECchhhc
Confidence 9999876410 12347777777775 6888888664
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.017 Score=46.75 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=54.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHH-CCCEEEEE-ecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLK-DSYRVTIV-DNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~-~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
++|.|.|++|-+|+.+++.+.+ .+.++... ++... ....+.+.++.+.. ..++.-.++++++++ .+|+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~--~~~g~d~g~~~~~~------~~~~~v~~~l~~~~~--~~DV 70 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS--AKVGKDVGELAGIG------PLGVPVTDDLEELLE--EADV 70 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS--TTTTSBCHHHCTSS------T-SSBEBS-HHHHTT--H-SE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc--ccccchhhhhhCcC------CcccccchhHHHhcc--cCCE
Confidence 5799999999999999999999 68886544 44321 11112222221110 011112245677774 3899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
||.... ...+...++.+.++++ .+|.-+|
T Consensus 71 vIDfT~------------------p~~~~~~~~~~~~~g~-~~ViGTT 99 (124)
T PF01113_consen 71 VIDFTN------------------PDAVYDNLEYALKHGV-PLVIGTT 99 (124)
T ss_dssp EEEES-------------------HHHHHHHHHHHHHHT--EEEEE-S
T ss_pred EEEcCC------------------hHHhHHHHHHHHhCCC-CEEEECC
Confidence 998752 2345567778888875 4444333
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.011 Score=56.42 Aligned_cols=76 Identities=17% Similarity=0.129 Sum_probs=46.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEE-ccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIY-ADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~Dl~d~~~~~~~~~~~~~dvv 149 (413)
.+|||+||+|.+|..++..+...|++|++++++.. ..+.++++ +.. .++. .+-.+.....+.....++|++
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~----~~~~~~~l---Ga~-~vi~~~~~~~~~~~~~~~~~~gvdvv 211 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDE----KVAYLKKL---GFD-VAFNYKTVKSLEETLKKASPDGYDCY 211 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHc---CCC-EEEeccccccHHHHHHHhCCCCeEEE
Confidence 78999999999999999888888999988765322 22333332 111 1111 111122222222222469999
Q ss_pred EEcCc
Q 015080 150 MHFAA 154 (413)
Q Consensus 150 i~~Ag 154 (413)
+++.|
T Consensus 212 ~d~~G 216 (325)
T TIGR02825 212 FDNVG 216 (325)
T ss_pred EECCC
Confidence 99876
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0064 Score=51.80 Aligned_cols=101 Identities=19% Similarity=0.264 Sum_probs=58.1
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCC----CCceEEEEccCCCHHHHHHHhhc--
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE----PGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
|++|-+.| .|-+|+.+++.|++.|++|++.+|+..+.++..+.-...... -....++..=+.+.+++++++..
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~ 79 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN 79 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH
Confidence 68999999 699999999999999999999987543322222110000000 12345666667787777776643
Q ss_pred -----CCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC
Q 015080 144 -----NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG 187 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~ 187 (413)
..-+++|++... .+ ..++.+.+.+.+.+
T Consensus 80 i~~~l~~g~iiid~sT~--------~p--------~~~~~~~~~~~~~g 112 (163)
T PF03446_consen 80 ILAGLRPGKIIIDMSTI--------SP--------ETSRELAERLAAKG 112 (163)
T ss_dssp HGGGS-TTEEEEE-SS----------H--------HHHHHHHHHHHHTT
T ss_pred HhhccccceEEEecCCc--------ch--------hhhhhhhhhhhhcc
Confidence 233566655432 12 22555666676665
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.051 Score=51.13 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=95.5
Q ss_pred EEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCC-CCceEEEEccCCCHHHHHHHhhcCCCcEEEE
Q 015080 75 VTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPE-PGRLQFIYADLGDAKAVNKFFSENAFDAVMH 151 (413)
Q Consensus 75 ITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi~ 151 (413)
|.| .|.||++++..|+..+. +++++|............+.+.... ...+.+. . .+.+ .+ .+.|+||-
T Consensus 1 iIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~-~--~~~~----~~--~daDivVi 70 (299)
T TIGR01771 1 IIG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR-S--GDYS----DC--KDADLVVI 70 (299)
T ss_pred CCC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe-c--CCHH----HH--CCCCEEEE
Confidence 356 59999999999998865 7999998655555444444443221 1223333 2 3333 23 68899999
Q ss_pred cCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccce---ecCCCCCCCCCCCCCCCCCChhHH-HHHH
Q 015080 152 FAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSSTCA---TYGEPEKMPITEETPQAPINPYGK-AKKM 226 (413)
Q Consensus 152 ~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS~~---~~~~~~~~~~~e~~~~~~~~~Y~~-sK~~ 226 (413)
.||.... ...+..+.++.|..-.+.+.+.+.+.+.. .++.+|.-. +|-.. .....++....+. +...
T Consensus 71 tag~~rk--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~------~~sg~p~~~viG~gt~LD 142 (299)
T TIGR01771 71 TAGAPQK--PGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVAW------KLSGFPKNRVIGSGTVLD 142 (299)
T ss_pred CCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH------HHhCCCHHHEEeccchHH
Confidence 9997532 23456788999999999999999988644 455555410 00000 0001111111222 2233
Q ss_pred HHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 227 AEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 227 ~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
..++...+++..+++...++. +|+|..
T Consensus 143 s~R~~~~la~~l~v~~~~V~~-~v~GeH 169 (299)
T TIGR01771 143 TARLRYLLAEKLGVDPQSVHA-YIIGEH 169 (299)
T ss_pred HHHHHHHHHHHhCcCcCeEEE-EEEecC
Confidence 344445555567888777874 588864
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0033 Score=58.72 Aligned_cols=72 Identities=24% Similarity=0.222 Sum_probs=47.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
++|+|.| +|+.|++++..|++.|. +|++++|+..+.+...+.+.+.. ....+... +++.+.+ .++|+|
T Consensus 128 k~vlIlG-aGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~---~~~~~~~~-----~~~~~~~--~~aDiV 196 (284)
T PRK12549 128 ERVVQLG-AGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF---PAARATAG-----SDLAAAL--AAADGL 196 (284)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC---CCeEEEec-----cchHhhh--CCCCEE
Confidence 7899999 59999999999999998 79999876554444444433221 12222221 1223334 568999
Q ss_pred EEcC
Q 015080 150 MHFA 153 (413)
Q Consensus 150 i~~A 153 (413)
||+.
T Consensus 197 InaT 200 (284)
T PRK12549 197 VHAT 200 (284)
T ss_pred EECC
Confidence 9994
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.02 Score=55.29 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=28.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNL 103 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~ 103 (413)
++|+|+||||++|++|++.|.+... +++.+.++
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s 37 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAAS 37 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcC
Confidence 7899999999999999999998755 88877443
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0055 Score=53.53 Aligned_cols=34 Identities=35% Similarity=0.441 Sum_probs=29.2
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
||++.|.| +|-||..|+++|++.||+|++..|..
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCCeEEEecCCC
Confidence 57888866 89999999999999999999885433
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.012 Score=54.90 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=49.3
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
.+ |+++|.|+ |+-+++++..|+..|. +|++++|+....+++.+....+... ........++.+.+.+.+.+ .+.
T Consensus 123 ~~-k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~-~~~~~~~~~~~~~~~l~~~~--~~a 197 (288)
T PRK12749 123 KG-KTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNEN-TDCVVTVTDLADQQAFAEAL--ASA 197 (288)
T ss_pred CC-CEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhc-cCceEEEechhhhhhhhhhc--ccC
Confidence 35 89999995 8889999999999997 7999988643223333332222111 11111112232222344444 578
Q ss_pred cEEEEcCcc
Q 015080 147 DAVMHFAAV 155 (413)
Q Consensus 147 dvvi~~Ag~ 155 (413)
|+|||+-.+
T Consensus 198 DivINaTp~ 206 (288)
T PRK12749 198 DILTNGTKV 206 (288)
T ss_pred CEEEECCCC
Confidence 999997654
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.016 Score=55.13 Aligned_cols=98 Identities=20% Similarity=0.167 Sum_probs=61.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHH---hhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKF---FSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~---~~~~~~d 147 (413)
.+++|+|+++.+|..+++.+...|++|++++++..+ .+.+... +. . ...|..+.+....+ ....++|
T Consensus 168 ~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~----~~~~~~~---~~--~-~~~~~~~~~~~~~~~~~~~~~~~d 237 (342)
T cd08266 168 ETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDK----LERAKEL---GA--D-YVIDYRKEDFVREVRELTGKRGVD 237 (342)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHc---CC--C-eEEecCChHHHHHHHHHhCCCCCc
Confidence 789999999999999999999999999888653321 2222222 11 1 12355554443333 3235799
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
++++++|.. ....+++.++. .+++|.+++..
T Consensus 238 ~~i~~~g~~------------------~~~~~~~~l~~--~G~~v~~~~~~ 268 (342)
T cd08266 238 VVVEHVGAA------------------TWEKSLKSLAR--GGRLVTCGATT 268 (342)
T ss_pred EEEECCcHH------------------HHHHHHHHhhc--CCEEEEEecCC
Confidence 999998731 01223444443 36899998743
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.065 Score=50.55 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=69.7
Q ss_pred EEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCC-CCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPE-PGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|.|.|+ |.+|..++..|+..|. +|+++|++..........+.+.... .....+ ... +|.+ .+ .+.|+||
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I-~~t-~d~~----~l--~dADiVI 71 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKV-TGT-NDYE----DI--AGSDVVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEE-EEc-CCHH----Hh--CCCCEEE
Confidence 468897 9999999999998876 9999998644322111112221111 111222 111 2222 24 6889999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEE-EEecc
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL-IYSST 196 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~i-V~~SS 196 (413)
.++|.... ...+..+.+..|..-.+.+++.+.+.....+ |.+|.
T Consensus 72 it~g~p~~--~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 72 ITAGIPRK--PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred EecCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99986432 2234455677788888899999988764444 55543
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.024 Score=55.45 Aligned_cols=82 Identities=22% Similarity=0.250 Sum_probs=55.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCC-------------------chhhhhhhhhcCCCCceEE
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGN-------------------IGAVKVLQELFPEPGRLQF 126 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~ 126 (413)
+.. .+|+|.| .|++|.++++.|+..|. +++++|...-.. +.+++.++++.+. -+++.
T Consensus 36 L~~-~~VlivG-~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~-v~v~~ 112 (390)
T PRK07411 36 LKA-ASVLCIG-TGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPY-CQVDL 112 (390)
T ss_pred Hhc-CcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCC-CeEEE
Confidence 445 7899999 59999999999999998 677776532111 1123344444443 45666
Q ss_pred EEccCCCHHHHHHHhhcCCCcEEEEcCc
Q 015080 127 IYADLGDAKAVNKFFSENAFDAVMHFAA 154 (413)
Q Consensus 127 ~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag 154 (413)
+...++.. ...+++ .++|+||.+..
T Consensus 113 ~~~~~~~~-~~~~~~--~~~D~Vvd~~d 137 (390)
T PRK07411 113 YETRLSSE-NALDIL--APYDVVVDGTD 137 (390)
T ss_pred EecccCHH-hHHHHH--hCCCEEEECCC
Confidence 76666653 455666 67899998753
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.059 Score=49.08 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=71.4
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
|++|||.|||+ =|+.|++.|.+.|+.|++..-..... . . ...+....+-+.|.+++.+++++.+++.|
T Consensus 2 ~~~IlvlgGT~-egr~la~~L~~~g~~v~~Svat~~g~---~-------~-~~~~~v~~G~l~~~~~l~~~l~~~~i~~V 69 (248)
T PRK08057 2 MPRILLLGGTS-EARALARALAAAGVDIVLSLAGRTGG---P-------A-DLPGPVRVGGFGGAEGLAAYLREEGIDLV 69 (248)
T ss_pred CceEEEEechH-HHHHHHHHHHhCCCeEEEEEccCCCC---c-------c-cCCceEEECCCCCHHHHHHHHHHCCCCEE
Confidence 47899999865 59999999999999887654322111 0 1 14567778888899999999999999999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIY 193 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~ 193 (413)
|...=. .. ...++++.++|.+.++..+=|
T Consensus 70 IDATHP---------fA------~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 70 IDATHP---------YA------AQISANAAAACRALGIPYLRL 98 (248)
T ss_pred EECCCc---------cH------HHHHHHHHHHHHHhCCcEEEE
Confidence 987532 11 233778889999998865544
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0079 Score=48.95 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=41.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHH
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAK 135 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 135 (413)
+++++.| .| -|.+++..|.+.|++|+++|.++.. .+..++ ..+.++.+|+.+++
T Consensus 18 ~kileIG-~G-fG~~vA~~L~~~G~~ViaIDi~~~a----V~~a~~-----~~~~~v~dDlf~p~ 71 (134)
T PRK04148 18 KKIVELG-IG-FYFKVAKKLKESGFDVIVIDINEKA----VEKAKK-----LGLNAFVDDLFNPN 71 (134)
T ss_pred CEEEEEE-ec-CCHHHHHHHHHCCCEEEEEECCHHH----HHHHHH-----hCCeEEECcCCCCC
Confidence 6899999 56 8999999999999999999875542 222222 35788999998865
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0063 Score=61.95 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=31.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
..+ |+++|+|+ |++|++++..|++.|++|++++|+
T Consensus 377 ~~~-k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 377 LAG-KLFVVIGA-GGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CCC-CEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCC
Confidence 345 89999997 899999999999999999988764
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.012 Score=50.18 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=44.0
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
.+.+ ++|+|.|+++.+|..+++.|.++|++|+++.|.. +++.+.+ ..
T Consensus 41 ~l~g-k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------------------------~~l~~~l--~~ 87 (168)
T cd01080 41 DLAG-KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------------------------KNLKEHT--KQ 87 (168)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------------------------hhHHHHH--hh
Confidence 3556 9999999866789999999999999998886521 2344555 56
Q ss_pred CcEEEEcCcc
Q 015080 146 FDAVMHFAAV 155 (413)
Q Consensus 146 ~dvvi~~Ag~ 155 (413)
.|+||.+.+.
T Consensus 88 aDiVIsat~~ 97 (168)
T cd01080 88 ADIVIVAVGK 97 (168)
T ss_pred CCEEEEcCCC
Confidence 8999988764
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.014 Score=55.97 Aligned_cols=74 Identities=20% Similarity=0.243 Sum_probs=50.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC-CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhh--cCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFS--ENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~~~d 147 (413)
+.|||.||+|++|++.++-+...| .+|+.++ + .+.. +.++++.. . ...|..+++-+++..+ ..++|
T Consensus 159 ~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~-s-~e~~---~l~k~lGA----d--~vvdy~~~~~~e~~kk~~~~~~D 227 (347)
T KOG1198|consen 159 KSVLVLGGSGGVGTAAIQLAKHAGAIKVVTAC-S-KEKL---ELVKKLGA----D--EVVDYKDENVVELIKKYTGKGVD 227 (347)
T ss_pred CeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEc-c-cchH---HHHHHcCC----c--EeecCCCHHHHHHHHhhcCCCcc
Confidence 899999999999999999988889 5555543 2 2222 23333311 1 2257777665555554 35799
Q ss_pred EEEEcCcc
Q 015080 148 AVMHFAAV 155 (413)
Q Consensus 148 vvi~~Ag~ 155 (413)
+|+.|.|-
T Consensus 228 vVlD~vg~ 235 (347)
T KOG1198|consen 228 VVLDCVGG 235 (347)
T ss_pred EEEECCCC
Confidence 99999985
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.021 Score=54.72 Aligned_cols=92 Identities=12% Similarity=0.178 Sum_probs=56.9
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEE---EEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVT---IVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
+|+|.||||++|.+|++.|.++++.++ .+.+........ . . .+......|+. .+ .+ .++|+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~-~----~----~~~~~~~~~~~-~~----~~--~~~D~ 64 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKV-T----F----KGKELEVNEAK-IE----SF--EGIDI 64 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCee-e----e----CCeeEEEEeCC-hH----Hh--cCCCE
Confidence 489999999999999999999888643 333322211111 1 0 12445556664 11 23 47899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
||.++|.. .+..+++.+.+.|+ ++|=.||..
T Consensus 65 v~~a~g~~------------------~s~~~a~~~~~~G~-~VID~ss~~ 95 (339)
T TIGR01296 65 ALFSAGGS------------------VSKEFAPKAAKCGA-IVIDNTSAF 95 (339)
T ss_pred EEECCCHH------------------HHHHHHHHHHHCCC-EEEECCHHH
Confidence 99998732 14445666666665 566667643
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.028 Score=51.68 Aligned_cols=66 Identities=14% Similarity=0.218 Sum_probs=43.2
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHC-CCEEEEE-ecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIV-DNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~-G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
|++|.|+|++|.+|+.+++.+.+. +.+++.+ ++........ -..++...+++++++ .++|
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~----------------~~~~i~~~~dl~~ll--~~~D 62 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ----------------GALGVAITDDLEAVL--ADAD 62 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc----------------CCCCccccCCHHHhc--cCCC
Confidence 478999999999999999998864 6787664 4332221110 112333344556666 3689
Q ss_pred EEEEcC
Q 015080 148 AVMHFA 153 (413)
Q Consensus 148 vvi~~A 153 (413)
+||.++
T Consensus 63 vVid~t 68 (257)
T PRK00048 63 VLIDFT 68 (257)
T ss_pred EEEECC
Confidence 999887
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.029 Score=52.17 Aligned_cols=105 Identities=23% Similarity=0.244 Sum_probs=65.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCC-------------------CCchhhhhhhhhcCCCCceEEEEcc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSR-------------------GNIGAVKVLQELFPEPGRLQFIYAD 130 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 130 (413)
.+|||.| .|++|.++++.|+..|. +|+++|...- +.+.+.+.++++.+. -.++.+..+
T Consensus 20 s~VLIvG-~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~-V~V~~~~~~ 97 (286)
T cd01491 20 SNVLISG-LGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPY-VPVTVSTGP 97 (286)
T ss_pred CcEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCC-CEEEEEecc
Confidence 6899999 59999999999999998 5888774321 112233445555443 445555555
Q ss_pred CCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCC
Q 015080 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGE 202 (413)
Q Consensus 131 l~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~ 202 (413)
++ . +.+ .++|+||.+.. +... ...+-++|++.++ .+|...+...+|.
T Consensus 98 ~~-~----~~l--~~fdvVV~~~~---------~~~~--------~~~in~~c~~~~i-pfI~a~~~G~~G~ 144 (286)
T cd01491 98 LT-T----DEL--LKFQVVVLTDA---------SLED--------QLKINEFCHSPGI-KFISADTRGLFGS 144 (286)
T ss_pred CC-H----HHH--hcCCEEEEecC---------CHHH--------HHHHHHHHHHcCC-EEEEEeccccEEE
Confidence 32 2 334 46788887642 1222 2234466777765 7888887666653
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.014 Score=52.29 Aligned_cols=36 Identities=31% Similarity=0.367 Sum_probs=31.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG 106 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~ 106 (413)
|+|.|+||+|.+|..++..|++.|++|++.+|+..+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~ 36 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEK 36 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHH
Confidence 469999999999999999999999999998775443
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0024 Score=56.43 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=31.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
.+.+ |+|+|+|. |.+|+++++.|.+.|++|++.+++
T Consensus 25 ~l~g-k~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 25 SLEG-KTVAVQGL-GKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCC-CEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3456 89999995 799999999999999999988754
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0097 Score=55.56 Aligned_cols=75 Identities=16% Similarity=0.105 Sum_probs=47.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
++++|.| +|+.|++++..|++.|. +|+++.|+..+.+++.+.+... ..+. . +...+++.+.+ ...|+|
T Consensus 126 k~vlvlG-aGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~----~~~~--~--~~~~~~~~~~~--~~~DiV 194 (282)
T TIGR01809 126 FRGLVIG-AGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQV----GVIT--R--LEGDSGGLAIE--KAAEVL 194 (282)
T ss_pred ceEEEEc-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhc----Ccce--e--ccchhhhhhcc--cCCCEE
Confidence 7899999 59999999999999997 6999887644433333322111 1111 1 11223333444 568999
Q ss_pred EEcCccc
Q 015080 150 MHFAAVA 156 (413)
Q Consensus 150 i~~Ag~~ 156 (413)
||+..+.
T Consensus 195 InaTp~g 201 (282)
T TIGR01809 195 VSTVPAD 201 (282)
T ss_pred EECCCCC
Confidence 9997654
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.027 Score=59.06 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=70.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCC------------------CchhhhhhhhhcCCCCceE
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRG------------------NIGAVKVLQELFPEPGRLQ 125 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~------------------~~~~~~~~~~~~~~~~~~~ 125 (413)
.+.+ .+|+|.|+ | +|++++..|+..|. +++++|...=. .+.+++.+.++.+. -+++
T Consensus 104 ~L~~-~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~-i~v~ 179 (722)
T PRK07877 104 RLGR-LRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPY-LPVE 179 (722)
T ss_pred HHhc-CCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCC-CEEE
Confidence 3445 88999998 7 99999999999994 78888753211 11133445555443 5777
Q ss_pred EEEccCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHH-HHHHHHHcCCCEEEEecc
Q 015080 126 FIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLV-VLESMARHGVDTLIYSST 196 (413)
Q Consensus 126 ~~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~-ll~~~~~~~~~~iV~~SS 196 (413)
.+...++ .+.+.+++ .++|+||.|.- |+. ++. +-++|.+.++ .+|+-++
T Consensus 180 ~~~~~i~-~~n~~~~l--~~~DlVvD~~D-----------------~~~-~R~~ln~~a~~~~i-P~i~~~~ 229 (722)
T PRK07877 180 VFTDGLT-EDNVDAFL--DGLDVVVEECD-----------------SLD-VKVLLREAARARRI-PVLMATS 229 (722)
T ss_pred EEeccCC-HHHHHHHh--cCCCEEEECCC-----------------CHH-HHHHHHHHHHHcCC-CEEEEcC
Confidence 7888877 67788888 67999998852 111 333 4466677765 5666664
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0093 Score=56.90 Aligned_cols=101 Identities=22% Similarity=0.168 Sum_probs=59.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
.+|||+||+|++|...+.-+...|+.++++...+ ++.. .++++... .-+.+..-| =.+.+.++....++|+|+
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~---~k~~-~~~~lGAd-~vi~y~~~~--~~~~v~~~t~g~gvDvv~ 216 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSS---EKLE-LLKELGAD-HVINYREED--FVEQVRELTGGKGVDVVL 216 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHcCCcEEEEecCH---HHHH-HHHhcCCC-EEEcCCccc--HHHHHHHHcCCCCceEEE
Confidence 7999999999999999999999997666654222 2222 44443221 111211222 123444555445799999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
..-|-.. ....+..++.. ++++.+....
T Consensus 217 D~vG~~~------------------~~~~l~~l~~~--G~lv~ig~~~ 244 (326)
T COG0604 217 DTVGGDT------------------FAASLAALAPG--GRLVSIGALS 244 (326)
T ss_pred ECCCHHH------------------HHHHHHHhccC--CEEEEEecCC
Confidence 9877321 11234444433 6898888754
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0086 Score=55.98 Aligned_cols=70 Identities=20% Similarity=0.143 Sum_probs=48.1
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
.+.+ ++++|+|. |.+|+.+++.|...|++|++++|+... .. .+.+ .+...+ ..+++.+.+ .+
T Consensus 148 ~l~g-k~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~---~~-~~~~-----~g~~~~-----~~~~l~~~l--~~ 209 (287)
T TIGR02853 148 TIHG-SNVMVLGF-GRTGMTIARTFSALGARVFVGARSSAD---LA-RITE-----MGLIPF-----PLNKLEEKV--AE 209 (287)
T ss_pred CCCC-CEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHH---HH-HHHH-----CCCeee-----cHHHHHHHh--cc
Confidence 3456 89999995 889999999999999999998875322 11 1111 112211 234566666 67
Q ss_pred CcEEEEcC
Q 015080 146 FDAVMHFA 153 (413)
Q Consensus 146 ~dvvi~~A 153 (413)
.|+||++.
T Consensus 210 aDiVint~ 217 (287)
T TIGR02853 210 IDIVINTI 217 (287)
T ss_pred CCEEEECC
Confidence 89999976
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.013 Score=54.49 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=31.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEec
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 102 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r 102 (413)
.+.+ |+|+|.|++|.+|+.++..|+++|++|+++.+
T Consensus 156 ~l~G-k~vvViG~gg~vGkpia~~L~~~gatVtv~~~ 191 (283)
T PRK14192 156 ELAG-KHAVVVGRSAILGKPMAMMLLNANATVTICHS 191 (283)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence 3557 89999999989999999999999999998764
|
|
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.011 Score=54.17 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=56.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
++|+..| ||-+|.+++-.+.+.|.+|+.+||...... ..+ --..+..|..|.++++.++++.++|.||
T Consensus 13 ~kvmLLG-SGELGKEvaIe~QRLG~eViAVDrY~~APA---mqV--------Ahrs~Vi~MlD~~al~avv~rekPd~IV 80 (394)
T COG0027 13 TKVMLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPA---MQV--------AHRSYVIDMLDGDALRAVVEREKPDYIV 80 (394)
T ss_pred eEEEEec-CCccchHHHHHHHhcCCEEEEecCcCCChh---hhh--------hhheeeeeccCHHHHHHHHHhhCCCeee
Confidence 6799999 899999999999999999999998654322 111 1123558999999999999999999998
Q ss_pred Ec
Q 015080 151 HF 152 (413)
Q Consensus 151 ~~ 152 (413)
--
T Consensus 81 pE 82 (394)
T COG0027 81 PE 82 (394)
T ss_pred eh
Confidence 54
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.069 Score=48.73 Aligned_cols=99 Identities=28% Similarity=0.389 Sum_probs=69.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||.|||+ =|+.|+..|.+.|+ |++..-.+... .+.. +.......+.+-+.+.+.+.+++++.+++.||
T Consensus 1 m~ILvlgGTt-E~r~la~~L~~~g~-v~~sv~t~~g~-----~~~~--~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vI 71 (249)
T PF02571_consen 1 MKILVLGGTT-EGRKLAERLAEAGY-VIVSVATSYGG-----ELLK--PELPGLEVRVGRLGDEEGLAEFLRENGIDAVI 71 (249)
T ss_pred CEEEEEechH-HHHHHHHHHHhcCC-EEEEEEhhhhH-----hhhc--cccCCceEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 6899999865 59999999999998 55433211111 1110 11135677888888999999999999999999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIY 193 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~ 193 (413)
...-. .. ...++++.++|++.++..+=|
T Consensus 72 DATHP---------fA------~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 72 DATHP---------FA------AEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred ECCCc---------hH------HHHHHHHHHHHhhcCcceEEE
Confidence 87532 22 233778888999988765444
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.012 Score=57.93 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=50.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
+.+ ++|+|.|+ |++|..+++.|.+.|. +|+++.|+.. .+.....+. + ... ....+++.+.+ ..
T Consensus 179 l~~-kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~---ra~~La~~~-~---~~~-----~~~~~~l~~~l--~~ 242 (414)
T PRK13940 179 ISS-KNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIE---KAQKITSAF-R---NAS-----AHYLSELPQLI--KK 242 (414)
T ss_pred ccC-CEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHH---HHHHHHHHh-c---CCe-----EecHHHHHHHh--cc
Confidence 446 89999995 9999999999999996 6888766432 222222221 1 111 22334566667 67
Q ss_pred CcEEEEcCcccC
Q 015080 146 FDAVMHFAAVAY 157 (413)
Q Consensus 146 ~dvvi~~Ag~~~ 157 (413)
.|+||++.+...
T Consensus 243 aDiVI~aT~a~~ 254 (414)
T PRK13940 243 ADIIIAAVNVLE 254 (414)
T ss_pred CCEEEECcCCCC
Confidence 899999987543
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.017 Score=56.08 Aligned_cols=73 Identities=23% Similarity=0.245 Sum_probs=52.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
++|+|.|+ |.+|...++.|...|++|+++++...+. +.+.... .. .+..+..+.+.+.+.+ ...|+||
T Consensus 168 ~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~----~~l~~~~---g~--~v~~~~~~~~~l~~~l--~~aDvVI 235 (370)
T TIGR00518 168 GDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRL----RQLDAEF---GG--RIHTRYSNAYEIEDAV--KRADLLI 235 (370)
T ss_pred ceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHH----HHHHHhc---Cc--eeEeccCCHHHHHHHH--ccCCEEE
Confidence 67999986 9999999999999999999998643221 2222111 11 1234566778888888 6789999
Q ss_pred EcCcc
Q 015080 151 HFAAV 155 (413)
Q Consensus 151 ~~Ag~ 155 (413)
+++++
T Consensus 236 ~a~~~ 240 (370)
T TIGR00518 236 GAVLI 240 (370)
T ss_pred Ecccc
Confidence 98865
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.014 Score=54.97 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=49.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHH---HHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAK---AVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~~d 147 (413)
++++|+|++|.+|..+++.+...|.+|+++++...+ .+.+.+. + +.. ..|..+.+ .+.+.....++|
T Consensus 146 ~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~----~~~~~~~---g--~~~-~~~~~~~~~~~~~~~~~~~~~~d 215 (325)
T cd08253 146 ETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEG----AELVRQA---G--ADA-VFNYRAEDLADRILAATAGQGVD 215 (325)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHc---C--CCE-EEeCCCcCHHHHHHHHcCCCceE
Confidence 799999999999999999999999999988754322 2222222 1 111 13334333 333444445799
Q ss_pred EEEEcCc
Q 015080 148 AVMHFAA 154 (413)
Q Consensus 148 vvi~~Ag 154 (413)
++++++|
T Consensus 216 ~vi~~~~ 222 (325)
T cd08253 216 VIIEVLA 222 (325)
T ss_pred EEEECCc
Confidence 9999986
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.053 Score=58.13 Aligned_cols=110 Identities=11% Similarity=0.093 Sum_probs=69.5
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCC-------------------CCchhhhhhhhhcCCCCceEE
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSR-------------------GNIGAVKVLQELFPEPGRLQF 126 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~ 126 (413)
+.+ .+|+|.| .|++|++++..|+..|. +++++|-..= +.+.+++.++++.+. -+++.
T Consensus 330 L~~-srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~-v~I~~ 406 (989)
T PRK14852 330 LLR-SRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPF-LDIRS 406 (989)
T ss_pred Hhc-CcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCC-CeEEE
Confidence 445 7899999 69999999999999987 5666653211 111133445555443 46666
Q ss_pred EEccCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 127 IYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 127 ~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
+...+ +.+.+.+++ .++|+||.+.--.. +..-..+...|.+.++ .+|+.++.+
T Consensus 407 ~~~~I-~~en~~~fl--~~~DiVVDa~D~~~---------------~~~rr~l~~~c~~~~I-P~I~ag~~G 459 (989)
T PRK14852 407 FPEGV-AAETIDAFL--KDVDLLVDGIDFFA---------------LDIRRRLFNRALELGI-PVITAGPLG 459 (989)
T ss_pred EecCC-CHHHHHHHh--hCCCEEEECCCCcc---------------HHHHHHHHHHHHHcCC-CEEEeeccc
Confidence 76666 456678888 68999997653110 1112345566777775 566666533
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.031 Score=52.57 Aligned_cols=102 Identities=16% Similarity=0.135 Sum_probs=59.8
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|++|.|.||||+.|.+|.+.|+.+.. ++.+++...+......+....+. +..-.....-|.+.+ ...++|+
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~----g~~~l~~~~~~~~~~----~~~~~Dv 73 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLR----GLVDLPFQTIDPEKI----ELDECDV 73 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccc----cccccccccCChhhh----hcccCCE
Confidence 58999999999999999999999954 76666432222222333222221 111122222222222 2256899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
||-+--- .....+++.+.+.++ +||=+|...
T Consensus 74 vFlalPh------------------g~s~~~v~~l~~~g~-~VIDLSadf 104 (349)
T COG0002 74 VFLALPH------------------GVSAELVPELLEAGC-KVIDLSADF 104 (349)
T ss_pred EEEecCc------------------hhHHHHHHHHHhCCC-eEEECCccc
Confidence 9866421 114457777777766 588888855
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.072 Score=55.69 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=56.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC-------C------------CCchhhhhhhhhcCCCCceEE
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-------R------------GNIGAVKVLQELFPEPGRLQF 126 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~-------~------------~~~~~~~~~~~~~~~~~~~~~ 126 (413)
+.+ .+|+|.| .|++|++++..|+..|. +++++|-.. + +.+.+++.+.++.+. -+++.
T Consensus 41 L~~-~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~-~~I~~ 117 (679)
T PRK14851 41 LAE-AKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPF-LEITP 117 (679)
T ss_pred Hhc-CeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCC-CeEEE
Confidence 445 8899999 69999999999999997 566666321 1 111123344445443 56777
Q ss_pred EEccCCCHHHHHHHhhcCCCcEEEEcC
Q 015080 127 IYADLGDAKAVNKFFSENAFDAVMHFA 153 (413)
Q Consensus 127 ~~~Dl~d~~~~~~~~~~~~~dvvi~~A 153 (413)
+...++ .+.+.+++ .++|+||.+.
T Consensus 118 ~~~~i~-~~n~~~~l--~~~DvVid~~ 141 (679)
T PRK14851 118 FPAGIN-ADNMDAFL--DGVDVVLDGL 141 (679)
T ss_pred EecCCC-hHHHHHHH--hCCCEEEECC
Confidence 778885 45677888 6799999765
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.027 Score=52.20 Aligned_cols=98 Identities=19% Similarity=0.198 Sum_probs=60.5
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCC-CHHHHHHHhhcCCCc
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG-DAKAVNKFFSENAFD 147 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-d~~~~~~~~~~~~~d 147 (413)
| +++-|+|+.| +|+--++.-.+-|++|+++++..++.+++.+. + +.+.+ .|-+ |++.++++.. -.|
T Consensus 182 G-~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~---L-----GAd~f-v~~~~d~d~~~~~~~--~~d 248 (360)
T KOG0023|consen 182 G-KWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKS---L-----GADVF-VDSTEDPDIMKAIMK--TTD 248 (360)
T ss_pred C-cEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHh---c-----Cccee-EEecCCHHHHHHHHH--hhc
Confidence 5 9999999877 99776666667799999998766555544443 2 22332 3444 7777777763 345
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
.++|.+.-... .....++..++.. +++|+++-
T Consensus 249 g~~~~v~~~a~---------------~~~~~~~~~lk~~--Gt~V~vg~ 280 (360)
T KOG0023|consen 249 GGIDTVSNLAE---------------HALEPLLGLLKVN--GTLVLVGL 280 (360)
T ss_pred Ccceeeeeccc---------------cchHHHHHHhhcC--CEEEEEeC
Confidence 55555431100 0022355556554 58999986
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.018 Score=45.77 Aligned_cols=70 Identities=27% Similarity=0.387 Sum_probs=50.3
Q ss_pred EEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEEEc
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMHF 152 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi~~ 152 (413)
|+|.|. |-+|..+++.|.+.+.+|++++.+.. ..+.+.+ .++.++.+|.++++.++++-- .+++.|+-+
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~----~~~~~~~-----~~~~~i~gd~~~~~~l~~a~i-~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPE----RVEELRE-----EGVEVIYGDATDPEVLERAGI-EKADAVVIL 69 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHH----HHHHHHH-----TTSEEEES-TTSHHHHHHTTG-GCESEEEEE
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcH----HHHHHHh-----cccccccccchhhhHHhhcCc-cccCEEEEc
Confidence 578885 78999999999997779999975332 2222222 348899999999999887633 467887755
Q ss_pred C
Q 015080 153 A 153 (413)
Q Consensus 153 A 153 (413)
.
T Consensus 70 ~ 70 (116)
T PF02254_consen 70 T 70 (116)
T ss_dssp S
T ss_pred c
Confidence 4
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.088 Score=50.52 Aligned_cols=94 Identities=14% Similarity=0.187 Sum_probs=55.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC---EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY---RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
++|.|.||||++|.+|++.|.+++| ++..+.. .++..+.... ........++. .+ .+ .++|
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las-~rsaGk~~~~--------~~~~~~v~~~~-~~----~~--~~~D 71 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLAS-ARSAGKKVTF--------EGRDYTVEELT-ED----SF--DGVD 71 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEc-cCCCCCeeee--------cCceeEEEeCC-HH----HH--cCCC
Confidence 7899999999999999999999877 4444332 1222111111 11222223332 22 23 4689
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccee
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCAT 199 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~ 199 (413)
+||.+++-. .+..+.+.+.+.|+ ++|=.|+..=
T Consensus 72 ~vf~a~p~~------------------~s~~~~~~~~~~g~-~VIDlS~~fR 104 (344)
T PLN02383 72 IALFSAGGS------------------ISKKFGPIAVDKGA-VVVDNSSAFR 104 (344)
T ss_pred EEEECCCcH------------------HHHHHHHHHHhCCC-EEEECCchhh
Confidence 999887621 14456666666654 7888888553
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.027 Score=52.15 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=46.0
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
.+.| |+|+|+|+++.+|..++..|.++|++|+++.+.. ..+.+.+ ..
T Consensus 155 ~l~G-k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------------------------~~l~~~~--~~ 201 (286)
T PRK14175 155 DLEG-KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------------------------KDMASYL--KD 201 (286)
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHH--hh
Confidence 3567 9999999999999999999999999999886421 1244445 57
Q ss_pred CcEEEEcCccc
Q 015080 146 FDAVMHFAAVA 156 (413)
Q Consensus 146 ~dvvi~~Ag~~ 156 (413)
.|+||.+.|..
T Consensus 202 ADIVIsAvg~p 212 (286)
T PRK14175 202 ADVIVSAVGKP 212 (286)
T ss_pred CCEEEECCCCC
Confidence 79999988853
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.031 Score=54.88 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=53.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|+|+|+ |..|..++..+.+.|++|++++..+..... .. . -.++..|..|.+.+.+++++.++|.|+
T Consensus 13 ~~ilIiG~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~--~~--------a-d~~~~~~~~d~~~l~~~~~~~~id~vi 80 (395)
T PRK09288 13 TRVMLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAM--QV--------A-HRSHVIDMLDGDALRAVIEREKPDYIV 80 (395)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchH--Hh--------h-hheEECCCCCHHHHHHHHHHhCCCEEE
Confidence 79999994 789999999999999999998864432111 00 0 124667889999999999877899988
Q ss_pred Ec
Q 015080 151 HF 152 (413)
Q Consensus 151 ~~ 152 (413)
-.
T Consensus 81 ~~ 82 (395)
T PRK09288 81 PE 82 (395)
T ss_pred Ee
Confidence 54
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.02 Score=54.90 Aligned_cols=75 Identities=19% Similarity=0.150 Sum_probs=46.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhh-hcCCCCceEEEEccCCC-HHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQE-LFPEPGRLQFIYADLGD-AKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d 147 (413)
.+|||+||+|.+|..++..+...|+ +|++++++.. + .+.+.+ + +.. .++..+=.+ .+.+.++.. .++|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~---~-~~~~~~~l---Ga~-~vi~~~~~~~~~~i~~~~~-~gvd 226 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDE---K-CQLLKSEL---GFD-AAINYKTDNVAERLRELCP-EGVD 226 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHH---H-HHHHHHhc---CCc-EEEECCCCCHHHHHHHHCC-CCce
Confidence 6899999999999999988888898 7988764322 1 222222 2 111 122111112 233444432 5799
Q ss_pred EEEEcCc
Q 015080 148 AVMHFAA 154 (413)
Q Consensus 148 vvi~~Ag 154 (413)
+++++.|
T Consensus 227 ~vid~~g 233 (345)
T cd08293 227 VYFDNVG 233 (345)
T ss_pred EEEECCC
Confidence 9999877
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.018 Score=54.74 Aligned_cols=33 Identities=36% Similarity=0.342 Sum_probs=30.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
.+++|+||+|.+|.++++.+...|.+|+++++.
T Consensus 164 ~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~ 196 (332)
T cd08259 164 DTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS 196 (332)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC
Confidence 689999999999999999999999999888653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.025 Score=52.74 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=47.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
|+++|.|+ |+-|++++..|++.|. +|++++|+..+.+++.+.+....+ ... ....| ...+.+.+ ..+|+|
T Consensus 128 k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~--~~~-~~~~~---~~~~~~~~--~~~div 198 (283)
T PRK14027 128 DSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVG--REA-VVGVD---ARGIEDVI--AAADGV 198 (283)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccC--cce-EEecC---HhHHHHHH--hhcCEE
Confidence 78999995 9999999999999997 688887755444444333321111 111 11123 22233333 468999
Q ss_pred EEcCccc
Q 015080 150 MHFAAVA 156 (413)
Q Consensus 150 i~~Ag~~ 156 (413)
||+..+.
T Consensus 199 INaTp~G 205 (283)
T PRK14027 199 VNATPMG 205 (283)
T ss_pred EEcCCCC
Confidence 9987543
|
|
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.019 Score=54.05 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=48.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHH---HHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAK---AVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~~d 147 (413)
.+++|+|++|.+|..++..+...|++|+++++... ..+.+++. +.. . ..|..+.+ .+.+.....++|
T Consensus 141 ~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~----~~~~~~~~---g~~-~--~~~~~~~~~~~~~~~~~~~~~~d 210 (323)
T cd05276 141 ETVLIHGGASGVGTAAIQLAKALGARVIATAGSEE----KLEACRAL---GAD-V--AINYRTEDFAEEVKEATGGRGVD 210 (323)
T ss_pred CEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHH----HHHHHHHc---CCC-E--EEeCCchhHHHHHHHHhCCCCeE
Confidence 78999999999999999999999999988765322 22222222 111 1 12333322 333343335799
Q ss_pred EEEEcCc
Q 015080 148 AVMHFAA 154 (413)
Q Consensus 148 vvi~~Ag 154 (413)
++++++|
T Consensus 211 ~vi~~~g 217 (323)
T cd05276 211 VILDMVG 217 (323)
T ss_pred EEEECCc
Confidence 9999987
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.063 Score=50.85 Aligned_cols=93 Identities=18% Similarity=0.122 Sum_probs=58.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
++|+|+|+. ++|...++.+...|++|++++++.++.+.+. ++ +. -.++.. +|++.++.+-+ .+|++|
T Consensus 168 ~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~----~l---GA-d~~i~~--~~~~~~~~~~~--~~d~ii 234 (339)
T COG1064 168 KWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAK----KL---GA-DHVINS--SDSDALEAVKE--IADAII 234 (339)
T ss_pred CEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHH----Hh---CC-cEEEEc--CCchhhHHhHh--hCcEEE
Confidence 899999975 9998888888889999999987655443332 22 11 222221 25555554442 389999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
.+++ ... ....++.++.. +++|.++-
T Consensus 235 ~tv~-~~~-----------------~~~~l~~l~~~--G~~v~vG~ 260 (339)
T COG1064 235 DTVG-PAT-----------------LEPSLKALRRG--GTLVLVGL 260 (339)
T ss_pred ECCC-hhh-----------------HHHHHHHHhcC--CEEEEECC
Confidence 9987 210 12344445443 58988876
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.056 Score=51.76 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=46.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCE-EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC--HHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD--AKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~d 147 (413)
.+|||+|+ |.+|..++..+...|++ |++++++..+ .+.++++ +.. .+ .|..+ .+.+.++....++|
T Consensus 165 ~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~----~~~~~~~---ga~-~~--i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 165 DTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPER----LELAKAL---GAD-FV--INSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHH----HHHHHHh---CCC-EE--EcCCcchHHHHHHHhCCCCCC
Confidence 78999985 99999999999999998 8887643222 2233333 111 11 22222 34454544334799
Q ss_pred EEEEcCc
Q 015080 148 AVMHFAA 154 (413)
Q Consensus 148 vvi~~Ag 154 (413)
++|.+.|
T Consensus 234 ~vid~~g 240 (339)
T cd08239 234 VAIECSG 240 (339)
T ss_pred EEEECCC
Confidence 9999987
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.013 Score=55.03 Aligned_cols=68 Identities=22% Similarity=0.214 Sum_probs=47.5
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
.+ ++++|.|. |.+|..++..|...|++|++++|.... .+..... +..++ ..+++.+.+ .+.|
T Consensus 151 ~g-~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~----~~~~~~~-----G~~~~-----~~~~l~~~l--~~aD 212 (296)
T PRK08306 151 HG-SNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAH----LARITEM-----GLSPF-----HLSELAEEV--GKID 212 (296)
T ss_pred CC-CEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHc-----CCeee-----cHHHHHHHh--CCCC
Confidence 45 89999995 889999999999999999999875321 1222221 22222 234556666 6799
Q ss_pred EEEEcC
Q 015080 148 AVMHFA 153 (413)
Q Consensus 148 vvi~~A 153 (413)
+||+++
T Consensus 213 iVI~t~ 218 (296)
T PRK08306 213 IIFNTI 218 (296)
T ss_pred EEEECC
Confidence 999975
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.025 Score=53.83 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=47.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC---HHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD---AKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d---~~~~~~~~~~~~~d 147 (413)
.+|||+||+|.+|..+++.+...|++|++++++.. ..+.++++ +.. .++ |..+ .+.+.+... .++|
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~----~~~~l~~~---Ga~-~vi--~~~~~~~~~~v~~~~~-~gvd 213 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDD----KVAWLKEL---GFD-AVF--NYKTVSLEEALKEAAP-DGID 213 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHc---CCC-EEE--eCCCccHHHHHHHHCC-CCcE
Confidence 78999999999999999988889999988764332 22333332 111 122 2222 223433332 5799
Q ss_pred EEEEcCc
Q 015080 148 AVMHFAA 154 (413)
Q Consensus 148 vvi~~Ag 154 (413)
+++++.|
T Consensus 214 ~vld~~g 220 (329)
T cd08294 214 CYFDNVG 220 (329)
T ss_pred EEEECCC
Confidence 9999876
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.019 Score=57.12 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=30.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
|+|.|.||+|.+|..+++.|.+.|++|++++|+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~ 34 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDP 34 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 4699999999999999999999999999998753
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.023 Score=56.34 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=48.8
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
..+ ++|+|.|+ |.+|..+++.|...|+ +|++++|+..+ +....... + . +..+.+++.+.+ .+
T Consensus 180 ~~~-~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~r---a~~la~~~---g--~-----~~~~~~~~~~~l--~~ 242 (423)
T PRK00045 180 LSG-KKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLER---AEELAEEF---G--G-----EAIPLDELPEAL--AE 242 (423)
T ss_pred ccC-CEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHH---HHHHHHHc---C--C-----cEeeHHHHHHHh--cc
Confidence 345 89999995 9999999999999997 78888764322 22222221 1 1 122334556666 57
Q ss_pred CcEEEEcCccc
Q 015080 146 FDAVMHFAAVA 156 (413)
Q Consensus 146 ~dvvi~~Ag~~ 156 (413)
+|+||.+.+..
T Consensus 243 aDvVI~aT~s~ 253 (423)
T PRK00045 243 ADIVISSTGAP 253 (423)
T ss_pred CCEEEECCCCC
Confidence 89999987643
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.035 Score=46.86 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=28.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEe
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVD 101 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~ 101 (413)
+.| |+|+|.|.|..+|..|+..|.++|+.|+++.
T Consensus 34 l~G-k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h 67 (160)
T PF02882_consen 34 LEG-KKVVVVGRSNIVGKPLAMLLLNKGATVTICH 67 (160)
T ss_dssp TTT--EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-
T ss_pred CCC-CEEEEECCcCCCChHHHHHHHhCCCeEEecc
Confidence 557 9999999999999999999999999999875
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.11 Score=51.22 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=62.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCC------EEEEEecCCCCCch-------------------hhhhhhhhcCCCCceEE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSY------RVTIVDNLSRGNIG-------------------AVKVLQELFPEPGRLQF 126 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~------~V~~~~r~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 126 (413)
+|||.| .|+||.++++.|+..|. +++++|...-.... +++.++++.+. -.++.
T Consensus 1 kVlvVG-aGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~-v~I~a 78 (435)
T cd01490 1 KVFLVG-AGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPD-LKITA 78 (435)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCC-CEEEE
Confidence 488999 69999999999999998 78888754322211 12223333332 34555
Q ss_pred EEccCCCHHH--H-HHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecC
Q 015080 127 IYADLGDAKA--V-NKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYG 201 (413)
Q Consensus 127 ~~~Dl~d~~~--~-~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~ 201 (413)
+...+..... + .+++ .++|+||++.- |+..-..+-+.|...++ .+|..++.+.+|
T Consensus 79 ~~~~v~~~~~~~~~~~f~--~~~DvVi~alD-----------------n~~aR~~vn~~C~~~~i-Pli~~gt~G~~G 136 (435)
T cd01490 79 LQNRVGPETEHIFNDEFW--EKLDGVANALD-----------------NVDARMYVDRRCVYYRK-PLLESGTLGTKG 136 (435)
T ss_pred EecccChhhhhhhhHHHh--cCCCEEEECCC-----------------CHHHHHHHHHHHHHhCC-CEEEEeccccee
Confidence 5555543211 1 2334 56788886642 22333345566666654 566666555443
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.037 Score=53.02 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=29.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
.+|||+||+|.+|..++..+...|++|++++++
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~ 185 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS 185 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 799999999999999999888899999887653
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.054 Score=52.80 Aligned_cols=67 Identities=24% Similarity=0.363 Sum_probs=51.1
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
||+|+|.|| |.+|..++..+.+.|++|++++....... ... .-.++..|..|.+.+.+++ ..+|+|
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~pa--~~~---------ad~~~~~~~~D~~~l~~~a--~~~dvi 67 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSPA--AQV---------ADEVIVADYDDVAALRELA--EQCDVI 67 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCch--hHh---------CceEEecCCCCHHHHHHHH--hcCCEE
Confidence 589999996 89999999999999999999975433211 111 1235668899999999998 578887
Q ss_pred E
Q 015080 150 M 150 (413)
Q Consensus 150 i 150 (413)
.
T Consensus 68 t 68 (372)
T PRK06019 68 T 68 (372)
T ss_pred E
Confidence 4
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.058 Score=50.15 Aligned_cols=30 Identities=37% Similarity=0.526 Sum_probs=25.7
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCC-EEEEEec
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSY-RVTIVDN 102 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~-~V~~~~r 102 (413)
+|||.| .|++|.++++.|+..|. +++++|.
T Consensus 1 kVLIvG-aGGLGs~vA~~La~aGVg~ItlvD~ 31 (307)
T cd01486 1 KCLLLG-AGTLGCNVARNLLGWGVRHITFVDS 31 (307)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEECC
Confidence 489999 59999999999999998 6777763
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.026 Score=55.81 Aligned_cols=73 Identities=21% Similarity=0.363 Sum_probs=48.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCC-CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
+.+ ++|+|.|+ |.+|..+++.|...| .+|++++|+..+ +.+....+ +. ..+ +.+++.+.+ .+
T Consensus 178 l~~-~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~r---a~~la~~~---g~--~~i-----~~~~l~~~l--~~ 240 (417)
T TIGR01035 178 LKG-KKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYER---AEDLAKEL---GG--EAV-----KFEDLEEYL--AE 240 (417)
T ss_pred ccC-CEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHH---HHHHHHHc---CC--eEe-----eHHHHHHHH--hh
Confidence 345 89999995 999999999999999 689988764432 22222222 11 122 224556666 57
Q ss_pred CcEEEEcCccc
Q 015080 146 FDAVMHFAAVA 156 (413)
Q Consensus 146 ~dvvi~~Ag~~ 156 (413)
.|+||.+.+..
T Consensus 241 aDvVi~aT~s~ 251 (417)
T TIGR01035 241 ADIVISSTGAP 251 (417)
T ss_pred CCEEEECCCCC
Confidence 89999987643
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.021 Score=53.00 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=50.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
++++|.| +|+-+++++..|++.|. +|+++.|+..+.+++++.+.+... .+. ..++.+.+.. ...|+|
T Consensus 127 ~~vlilG-AGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~---~~~--~~~~~~~~~~------~~~dli 194 (283)
T COG0169 127 KRVLILG-AGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA---AVE--AAALADLEGL------EEADLL 194 (283)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc---ccc--cccccccccc------cccCEE
Confidence 8999999 59999999999999995 799998876666666655554311 111 1222222211 147999
Q ss_pred EEcCccc
Q 015080 150 MHFAAVA 156 (413)
Q Consensus 150 i~~Ag~~ 156 (413)
||+-.+.
T Consensus 195 INaTp~G 201 (283)
T COG0169 195 INATPVG 201 (283)
T ss_pred EECCCCC
Confidence 9998654
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.07 Score=51.62 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=45.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCE-EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH---HHHHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA---KAVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~~ 146 (413)
.+|||.|+ |.+|..++..+...|++ |++++++..+ .+.++++ +.. .++ |..+. +.+.+.....++
T Consensus 178 ~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~----~~~~~~~---Ga~-~~i--~~~~~~~~~~i~~~~~~~g~ 246 (358)
T TIGR03451 178 DSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRK----LEWAREF---GAT-HTV--NSSGTDPVEAIRALTGGFGA 246 (358)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHH----HHHHHHc---CCc-eEE--cCCCcCHHHHHHHHhCCCCC
Confidence 78999985 99999999988888985 8887653322 2223332 111 122 22322 334444433469
Q ss_pred cEEEEcCc
Q 015080 147 DAVMHFAA 154 (413)
Q Consensus 147 dvvi~~Ag 154 (413)
|+||.+.|
T Consensus 247 d~vid~~g 254 (358)
T TIGR03451 247 DVVIDAVG 254 (358)
T ss_pred CEEEECCC
Confidence 99999987
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.16 Score=44.02 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=50.8
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC-HHHHHHHhhcC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD-AKAVNKFFSEN 144 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~ 144 (413)
++.| |+|+|.|-|.-+|..|+..|+++|++|++++.+.--.. ..+...........| +..+.+.+ .
T Consensus 59 ~l~G-K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~----------~~~~~~~hs~t~~~~~~~~l~~~~--~ 125 (197)
T cd01079 59 RLYG-KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVF----------TRGESIRHEKHHVTDEEAMTLDCL--S 125 (197)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHCCCEEEEEecCccccc----------ccccccccccccccchhhHHHHHh--h
Confidence 5678 99999999999999999999999999999863221100 000011111111122 22355666 6
Q ss_pred CCcEEEEcCcccC
Q 015080 145 AFDAVMHFAAVAY 157 (413)
Q Consensus 145 ~~dvvi~~Ag~~~ 157 (413)
..|+||-+.|...
T Consensus 126 ~ADIVIsAvG~~~ 138 (197)
T cd01079 126 QSDVVITGVPSPN 138 (197)
T ss_pred hCCEEEEccCCCC
Confidence 7899998888643
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.12 Score=46.12 Aligned_cols=109 Identities=18% Similarity=0.260 Sum_probs=69.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhh-------------------hhhhhhcCCCCceEEEE-c
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAV-------------------KVLQELFPEPGRLQFIY-A 129 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~-~ 129 (413)
.+|+|.| -|++|++.++.|++.|. +++++|-..=....+. +.+.++ .+.+++-. -
T Consensus 31 ~~V~VvG-iGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~I---nP~c~V~~~~ 106 (263)
T COG1179 31 AHVCVVG-IGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQI---NPECEVTAIN 106 (263)
T ss_pred CcEEEEe-cCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhh---CCCceEeehH
Confidence 6899999 59999999999999998 6777764321111111 222222 23344433 3
Q ss_pred cCCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCC
Q 015080 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPE 204 (413)
Q Consensus 130 Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~ 204 (413)
|.-.++.+++++.. ++|+||.+.- |+..=..|+..|.+++. -++||+++-+..+
T Consensus 107 ~f~t~en~~~~~~~-~~DyvIDaiD-----------------~v~~Kv~Li~~c~~~ki---~vIss~Gag~k~D 160 (263)
T COG1179 107 DFITEENLEDLLSK-GFDYVIDAID-----------------SVRAKVALIAYCRRNKI---PVISSMGAGGKLD 160 (263)
T ss_pred hhhCHhHHHHHhcC-CCCEEEEchh-----------------hhHHHHHHHHHHHHcCC---CEEeeccccCCCC
Confidence 55567778888754 7999997742 23334468888888754 5667766655443
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.13 Score=49.52 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=26.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC-CEEEEEe
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVD 101 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G-~~V~~~~ 101 (413)
++|.|+|++|++|++|++.|.+++ .+|+.+.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~ 32 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVV 32 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEE
Confidence 369999999999999999998876 5877663
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.3 Score=43.24 Aligned_cols=71 Identities=21% Similarity=0.269 Sum_probs=49.1
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
++.+ ++|||.|| |-+|..-++.|++.|++|++++... ..+..+ +. .. .++.++..+.... . + .+
T Consensus 6 ~l~g-k~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~--~~~l~~-l~---~~-~~i~~~~~~~~~~-d----l--~~ 69 (205)
T TIGR01470 6 NLEG-RAVLVVGG-GDVALRKARLLLKAGAQLRVIAEEL--ESELTL-LA---EQ-GGITWLARCFDAD-I----L--EG 69 (205)
T ss_pred EcCC-CeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCC--CHHHHH-HH---Hc-CCEEEEeCCCCHH-H----h--CC
Confidence 3557 89999995 9999999999999999999986321 122222 21 22 4788888887632 2 3 56
Q ss_pred CcEEEEc
Q 015080 146 FDAVMHF 152 (413)
Q Consensus 146 ~dvvi~~ 152 (413)
+|.||-+
T Consensus 70 ~~lVi~a 76 (205)
T TIGR01470 70 AFLVIAA 76 (205)
T ss_pred cEEEEEC
Confidence 7888744
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.054 Score=50.45 Aligned_cols=76 Identities=18% Similarity=0.339 Sum_probs=50.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCC-------------------CchhhhhhhhhcCCCCceEEEEccC
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRG-------------------NIGAVKVLQELFPEPGRLQFIYADL 131 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~Dl 131 (413)
+|||.| .|++|.++++.|+..|. +++++|...=. .+.+++.++++.+. -+++.+..++
T Consensus 1 kVlVVG-aGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~-v~I~~~~~~i 78 (291)
T cd01488 1 KILVIG-AGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPG-VNVTPHFGKI 78 (291)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCC-CEEEEEeccc
Confidence 489999 69999999999999998 67777643211 11123334444333 4677777788
Q ss_pred CCHHHHHHHhhcCCCcEEEEcC
Q 015080 132 GDAKAVNKFFSENAFDAVMHFA 153 (413)
Q Consensus 132 ~d~~~~~~~~~~~~~dvvi~~A 153 (413)
.+.+ .+++ .++|+||.+.
T Consensus 79 ~~~~--~~f~--~~fdvVi~al 96 (291)
T cd01488 79 QDKD--EEFY--RQFNIIICGL 96 (291)
T ss_pred Cchh--HHHh--cCCCEEEECC
Confidence 7643 4556 6789998754
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.035 Score=51.99 Aligned_cols=39 Identities=33% Similarity=0.388 Sum_probs=32.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchh
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGA 110 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~ 110 (413)
++|.|.| +|.+|..+|..|++.|++|++++++....+..
T Consensus 4 ~kIaViG-aG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~ 42 (287)
T PRK08293 4 KNVTVAG-AGVLGSQIAFQTAFHGFDVTIYDISDEALEKA 42 (287)
T ss_pred cEEEEEC-CCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence 6799999 59999999999999999999999765443333
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.18 Score=49.93 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=31.2
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~ 105 (413)
||+|.|.| .|++|..+|..|++.|++|++++++..
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 47899998 799999999999999999999987544
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.032 Score=52.86 Aligned_cols=71 Identities=24% Similarity=0.291 Sum_probs=47.0
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCC-CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
.+ ++|+|.|+ |.+|..+++.|...| .+|++++|+..+. .+...+. + ... .+.+++.+.+ ...
T Consensus 177 ~~-~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra---~~la~~~---g--~~~-----~~~~~~~~~l--~~a 239 (311)
T cd05213 177 KG-KKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERA---EELAKEL---G--GNA-----VPLDELLELL--NEA 239 (311)
T ss_pred cC-CEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHH---HHHHHHc---C--CeE-----EeHHHHHHHH--hcC
Confidence 45 88999996 999999999999876 5788887643322 2222222 1 122 2334566666 568
Q ss_pred cEEEEcCcc
Q 015080 147 DAVMHFAAV 155 (413)
Q Consensus 147 dvvi~~Ag~ 155 (413)
|+||.+.+.
T Consensus 240 DvVi~at~~ 248 (311)
T cd05213 240 DVVISATGA 248 (311)
T ss_pred CEEEECCCC
Confidence 999998774
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.04 Score=51.39 Aligned_cols=38 Identities=32% Similarity=0.442 Sum_probs=33.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
++.| |+|.|.|.+|.+|..++..|+++|++|+++.+..
T Consensus 156 ~l~G-k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t 193 (301)
T PRK14194 156 DLTG-KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS 193 (301)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC
Confidence 4567 9999999999999999999999999999986544
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.039 Score=50.54 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=58.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHH--HhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNK--FFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~--~~~~~~~dv 148 (413)
.+|+|+|+++ +|..+++.+...|.+|++++++.. ..+.+++.. . -.. .|..+.+...+ .....++|+
T Consensus 136 ~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g---~-~~~--~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 136 DTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDE----KLELAKELG---A-DHV--IDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHH----HHHHHHHhC---C-cee--ccCCcCCHHHHHHHhcCCCCCE
Confidence 7899999988 999999999999999998865322 222233221 1 111 23222222222 233357999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
++++++.. .....+++.++. .++++.+++..
T Consensus 205 vi~~~~~~-----------------~~~~~~~~~l~~--~G~~v~~~~~~ 235 (271)
T cd05188 205 VIDAVGGP-----------------ETLAQALRLLRP--GGRIVVVGGTS 235 (271)
T ss_pred EEECCCCH-----------------HHHHHHHHhccc--CCEEEEEccCC
Confidence 99998731 112334454543 36899888743
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.05 Score=52.46 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=28.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEec
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 102 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r 102 (413)
.+|||+||+|.+|..++..+...|++|+++++
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~ 191 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG 191 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEcC
Confidence 78999999999999999888888999988754
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.038 Score=53.83 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=30.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEec
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 102 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r 102 (413)
++|.|.||.|.+|..+++.|.+.|++|+++++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~ 130 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQ 130 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCC
Confidence 78999999999999999999999999999875
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.079 Score=49.59 Aligned_cols=41 Identities=17% Similarity=0.196 Sum_probs=34.3
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhh
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAV 111 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~ 111 (413)
+++|.|.|+ |.+|..+|..|+..|++|++++++....+...
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~ 45 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEELATAGR 45 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence 368999995 99999999999999999999998766554433
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.027 Score=56.62 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=30.5
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
.+ |+++|+|+ |++|++++..|.+.|++|++++|+.
T Consensus 331 ~~-k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~ 365 (477)
T PRK09310 331 NN-QHVAIVGA-GGAAKAIATTLARAGAELLIFNRTK 365 (477)
T ss_pred CC-CEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35 88999995 8999999999999999999887643
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.27 Score=45.41 Aligned_cols=31 Identities=32% Similarity=0.306 Sum_probs=25.8
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHC-CCEEEEEe
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVD 101 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~-G~~V~~~~ 101 (413)
|++|.|.|. |.||+.+++.|.+. +.++..+.
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~ 32 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVI 32 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEE
Confidence 578999997 99999999999886 56766555
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.11 Score=49.96 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=55.9
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHC-CCE---EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKD-SYR---VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~-G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
|++|.|.||||++|+.+.+.|+++ ... ++.++. .+..... ... .+-.....++.+.+.+ .+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss-~~sg~~~----~~f----~g~~~~v~~~~~~~~~------~~ 65 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFST-SQAGGAA----PSF----GGKEGTLQDAFDIDAL------KK 65 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecc-hhhCCcc----ccc----CCCcceEEecCChhHh------cC
Confidence 578999999999999999855554 555 555432 1111111 111 1112233444444332 46
Q ss_pred CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccce
Q 015080 146 FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSSTCA 198 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS~~ 198 (413)
+|++|.+++- ..+..+.+.+.+.|.+ .+|=.||..
T Consensus 66 ~Divf~a~~~------------------~~s~~~~~~~~~aG~~~~VID~Ss~f 101 (369)
T PRK06598 66 LDIIITCQGG------------------DYTNEVYPKLRAAGWQGYWIDAASTL 101 (369)
T ss_pred CCEEEECCCH------------------HHHHHHHHHHHhCCCCeEEEECChHH
Confidence 8999988862 1255677777777753 466666644
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.098 Score=50.27 Aligned_cols=72 Identities=17% Similarity=0.295 Sum_probs=44.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-CCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-NAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~~dv 148 (413)
.+|+|+|+ |.+|...+..+...|+ +|++++++..+ .+.++++ +.. .+ .|..+. ++.+..+. .++|+
T Consensus 171 ~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~----~~~a~~l---Ga~-~v--i~~~~~-~~~~~~~~~g~~D~ 238 (343)
T PRK09880 171 KRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRS----LSLAREM---GAD-KL--VNPQND-DLDHYKAEKGYFDV 238 (343)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHH----HHHHHHc---CCc-EE--ecCCcc-cHHHHhccCCCCCE
Confidence 78999986 9999999988888898 58777654322 2333333 111 11 233322 23333322 35899
Q ss_pred EEEcCc
Q 015080 149 VMHFAA 154 (413)
Q Consensus 149 vi~~Ag 154 (413)
+|.++|
T Consensus 239 vid~~G 244 (343)
T PRK09880 239 SFEVSG 244 (343)
T ss_pred EEECCC
Confidence 999987
|
|
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.081 Score=51.66 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=53.3
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEEE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMH 151 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi~ 151 (413)
+|+|.| +|..|..+++.+.+.|++|++++.+..... ... . -.++..|.+|.+.+.+++++.++|+|+-
T Consensus 1 kililG-~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~--~~~--------a-d~~~~~~~~d~~~l~~~~~~~~id~v~~ 68 (380)
T TIGR01142 1 RVLLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPA--MQV--------A-HRSYVINMLDGDALRAVIEREKPDYIVP 68 (380)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCEEEEEeCCCCCch--hhh--------C-ceEEEcCCCCHHHHHHHHHHhCCCEEEe
Confidence 589999 599999999999999999999986433211 111 1 1345678899999999998778999985
Q ss_pred cC
Q 015080 152 FA 153 (413)
Q Consensus 152 ~A 153 (413)
..
T Consensus 69 ~~ 70 (380)
T TIGR01142 69 EI 70 (380)
T ss_pred cc
Confidence 44
|
This enzyme is an alternative to PurN (TIGR00639) |
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.052 Score=51.41 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=48.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEcc-CCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD-LGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~d~~~~~~~~~~~~~dvv 149 (413)
.++||.|++|.+|..++..+...|++|+++.+.... .+.+++. +.. .++..+ ..-.+.+.++....++|+|
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~----~~~~~~~---g~~-~~~~~~~~~~~~~i~~~~~~~~~d~v 212 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAG----VAELRAL---GIG-PVVSTEQPGWQDKVREAAGGAPISVA 212 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHH----HHHHHhc---CCC-EEEcCCCchHHHHHHHHhCCCCCcEE
Confidence 789999999999999999999999999887643322 2222222 111 122111 1112344455444579999
Q ss_pred EEcCc
Q 015080 150 MHFAA 154 (413)
Q Consensus 150 i~~Ag 154 (413)
+++.|
T Consensus 213 ~d~~g 217 (324)
T cd08292 213 LDSVG 217 (324)
T ss_pred EECCC
Confidence 99887
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >PRK12767 carbamoyl phosphate synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.061 Score=51.30 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=45.6
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH---HHHHHHhhcC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA---KAVNKFFSEN 144 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~ 144 (413)
|++|||||+++.+ .+++.|.+.| ++|++++.+..... ... ....+..-+..+. +.+.+++++.
T Consensus 1 ~~~vLv~g~~~~~--~~~~~l~~~~~g~~vi~~d~~~~~~~--~~~--------~d~~~~~p~~~~~~~~~~l~~~~~~~ 68 (326)
T PRK12767 1 MMNILVTSAGRRV--QLVKALKKSLLKGRVIGADISELAPA--LYF--------ADKFYVVPKVTDPNYIDRLLDICKKE 68 (326)
T ss_pred CceEEEecCCccH--HHHHHHHHhccCCEEEEECCCCcchh--hHh--------ccCcEecCCCCChhHHHHHHHHHHHh
Confidence 6899999997776 8999999994 99999875432211 111 1111222233343 4566677778
Q ss_pred CCcEEEEc
Q 015080 145 AFDAVMHF 152 (413)
Q Consensus 145 ~~dvvi~~ 152 (413)
++|.|+-+
T Consensus 69 ~id~ii~~ 76 (326)
T PRK12767 69 KIDLLIPL 76 (326)
T ss_pred CCCEEEEC
Confidence 89998854
|
|
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.053 Score=51.16 Aligned_cols=76 Identities=20% Similarity=0.156 Sum_probs=48.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH-HHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA-KAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~~~dvv 149 (413)
.+++|+|++|.+|..++..+...|++|+++++...+ .+.+.+. +. -.++..+..+. ..+.+.....++|++
T Consensus 146 ~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~----~~~~~~~---g~-~~~~~~~~~~~~~~~~~~~~~~~~d~v 217 (328)
T cd08268 146 DSVLITAASSSVGLAAIQIANAAGATVIATTRTSEK----RDALLAL---GA-AHVIVTDEEDLVAEVLRITGGKGVDVV 217 (328)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHH----HHHHHHc---CC-CEEEecCCccHHHHHHHHhCCCCceEE
Confidence 689999999999999999999999999988654321 2222222 11 12222222222 233444433469999
Q ss_pred EEcCc
Q 015080 150 MHFAA 154 (413)
Q Consensus 150 i~~Ag 154 (413)
++++|
T Consensus 218 i~~~~ 222 (328)
T cd08268 218 FDPVG 222 (328)
T ss_pred EECCc
Confidence 99876
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.075 Score=39.13 Aligned_cols=33 Identities=33% Similarity=0.516 Sum_probs=29.0
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~ 105 (413)
+|+|.| +|++|.++|..|.+.|.+|+++.+..+
T Consensus 1 ~vvViG-gG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIG-GGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEES-SSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 578888 599999999999999999999987544
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.031 Score=53.04 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=31.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN 107 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~ 107 (413)
++|.|.| +|-+|..+|..|+..|++|++.++.....
T Consensus 8 ~~VaVIG-aG~MG~giA~~~a~aG~~V~l~D~~~~~~ 43 (321)
T PRK07066 8 KTFAAIG-SGVIGSGWVARALAHGLDVVAWDPAPGAE 43 (321)
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence 6899999 59999999999999999999998765433
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.099 Score=48.68 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=44.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCE-EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC-HHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD-AKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~dv 148 (413)
.+|+|.|+ |.||..++..+...|++ |++++++.. ..+.++++ + +..+ .|..+ .+.+.+.....++|+
T Consensus 122 ~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~----r~~~a~~~---G--a~~~-i~~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 122 RRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPD----RRELALSF---G--ATAL-AEPEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH----HHHHHHHc---C--CcEe-cCchhhHHHHHHHhCCCCCCE
Confidence 78999986 89999999988888986 777654322 22233332 1 1111 12222 223333333346999
Q ss_pred EEEcCc
Q 015080 149 VMHFAA 154 (413)
Q Consensus 149 vi~~Ag 154 (413)
+|.+.|
T Consensus 191 vid~~G 196 (280)
T TIGR03366 191 ALEFSG 196 (280)
T ss_pred EEECCC
Confidence 999987
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.05 Score=51.27 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=47.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHH---HHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAK---AVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~~d 147 (413)
.+++|+|++|.+|..++..+...|++|+++.+...+ .+.+... ++..+ .+..+.+ .+.+.....++|
T Consensus 141 ~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~----~~~~~~~-----g~~~~-~~~~~~~~~~~~~~~~~~~~~d 210 (325)
T TIGR02824 141 ETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEK----CAACEAL-----GADIA-INYREEDFVEVVKAETGGKGVD 210 (325)
T ss_pred CEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHc-----CCcEE-EecCchhHHHHHHHHcCCCCeE
Confidence 789999999999999999999999999888653221 1222221 11111 2222222 333333334699
Q ss_pred EEEEcCc
Q 015080 148 AVMHFAA 154 (413)
Q Consensus 148 vvi~~Ag 154 (413)
++++++|
T Consensus 211 ~~i~~~~ 217 (325)
T TIGR02824 211 VILDIVG 217 (325)
T ss_pred EEEECCc
Confidence 9999986
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.15 Score=49.03 Aligned_cols=76 Identities=25% Similarity=0.297 Sum_probs=46.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCE-EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc-E
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD-A 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d-v 148 (413)
.+|+|+| +|.+|..++..+...|.+ |++++++.. ..+.++++ +. -.++..+-.+.+.+.+.....++| +
T Consensus 162 ~~vlV~G-~g~vG~~~~~~a~~~G~~~v~~~~~~~~----~~~~~~~~---Ga-~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 162 KNVIIIG-AGTIGLLAIQCAVALGAKSVTAIDINSE----KLALAKSL---GA-MQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHH----HHHHHHHc---CC-ceEecCcccCHHHHHHHhcCCCCCeE
Confidence 7899997 599999999999999997 566654222 22223332 11 122222212244556655445788 8
Q ss_pred EEEcCcc
Q 015080 149 VMHFAAV 155 (413)
Q Consensus 149 vi~~Ag~ 155 (413)
+|.++|.
T Consensus 233 v~d~~G~ 239 (347)
T PRK10309 233 ILETAGV 239 (347)
T ss_pred EEECCCC
Confidence 9998873
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.056 Score=50.00 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=32.0
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEe
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVD 101 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~ 101 (413)
++.| |+|+|.|.|..+|..++..|.++|++|+++.
T Consensus 161 ~l~G-k~vvViGrs~iVGkPla~lL~~~~atVtv~h 195 (287)
T PRK14176 161 DIEG-KNAVIVGHSNVVGKPMAAMLLNRNATVSVCH 195 (287)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHCCCEEEEEe
Confidence 3567 9999999999999999999999999999875
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.12 Score=49.23 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=55.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC---EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY---RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
++|.|.||||++|.+|++.|.++.+ ++..+... ++..+... +. +..+.+- |+.+ . .+ .++|
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~-~saG~~~~----~~--~~~~~v~--~~~~-~----~~--~~~D 68 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFPVGELYALASE-ESAGETLR----FG--GKSVTVQ--DAAE-F----DW--SQAQ 68 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc-CcCCceEE----EC--CcceEEE--eCch-h----hc--cCCC
Confidence 7899999999999999999999533 66665422 22211111 00 1111111 2211 1 12 4689
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccee
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCAT 199 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~ 199 (413)
++|.+++- .....+++.+.+.|+ ++|=.|+..=
T Consensus 69 vvf~a~p~------------------~~s~~~~~~~~~~g~-~VIDlS~~fR 101 (336)
T PRK08040 69 LAFFVAGR------------------EASAAYAEEATNAGC-LVIDSSGLFA 101 (336)
T ss_pred EEEECCCH------------------HHHHHHHHHHHHCCC-EEEECChHhc
Confidence 99987752 124557777767665 7888887654
|
|
| >PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.05 Score=39.10 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=22.3
Q ss_pred CceEEEEEcCCChHHHH--HHHHHHHCCCEEEEEe
Q 015080 69 GVTHVLVTGGAGYIGSH--AALRLLKDSYRVTIVD 101 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~--la~~L~~~G~~V~~~~ 101 (413)
+.|+|||+|+|++.|.+ |+..+ ..|++.+.+.
T Consensus 38 GpK~VLViGaStGyGLAsRIa~aF-g~gA~TiGV~ 71 (78)
T PF12242_consen 38 GPKKVLVIGASTGYGLASRIAAAF-GAGADTIGVS 71 (78)
T ss_dssp S-SEEEEES-SSHHHHHHHHHHHH-CC--EEEEEE
T ss_pred CCceEEEEecCCcccHHHHHHHHh-cCCCCEEEEe
Confidence 33899999999999999 55555 6677877765
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.16 Score=47.78 Aligned_cols=95 Identities=19% Similarity=0.183 Sum_probs=54.3
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCE---EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYR---VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
|++|.|.||||-+|+.+++.|.++... +.++. +.++..+. ..++..-.+.-++.+.+.....++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~A-S~rSaG~~------------~~~f~~~~~~v~~~~~~~~~~~~~ 67 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLA-SARSAGKK------------YIEFGGKSIGVPEDAADEFVFSDV 67 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEe-cccccCCc------------cccccCccccCccccccccccccC
Confidence 478999999999999999999997542 33332 23332211 022211112222222222222478
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
|+++.+||-. .++.+.+.+.++|+ -+|=-||
T Consensus 68 Divf~~ag~~------------------~s~~~~p~~~~~G~-~VIdnsS 98 (334)
T COG0136 68 DIVFFAAGGS------------------VSKEVEPKAAEAGC-VVIDNSS 98 (334)
T ss_pred CEEEEeCchH------------------HHHHHHHHHHHcCC-EEEeCCc
Confidence 9999999731 14668888888873 3333344
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.066 Score=49.97 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=32.1
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEe
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVD 101 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~ 101 (413)
++.| |+|+|.|-++.+|..+|..|+++|++|+++.
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~ 189 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAANATVTIAH 189 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence 3557 9999999999999999999999999999984
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.067 Score=46.23 Aligned_cols=38 Identities=32% Similarity=0.307 Sum_probs=32.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~ 105 (413)
.+.+ ++|.|.| .|-||+++|+.|..-|.+|+.+++...
T Consensus 33 ~l~g-~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~ 70 (178)
T PF02826_consen 33 ELRG-KTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPK 70 (178)
T ss_dssp -STT-SEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred ccCC-CEEEEEE-EcCCcCeEeeeeecCCceeEEecccCC
Confidence 5667 9999999 699999999999999999999987543
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.059 Score=49.87 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=32.5
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEec
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 102 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r 102 (413)
++.| |+|+|.|-|..+|..|+..|.++|++|+++..
T Consensus 156 ~l~G-k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs 191 (285)
T PRK10792 156 DTYG-LNAVVVGASNIVGRPMSLELLLAGCTVTVCHR 191 (285)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHCCCeEEEEEC
Confidence 4567 99999999999999999999999999999853
|
|
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.13 Score=41.58 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=48.9
Q ss_pred EEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccC-------------------
Q 015080 73 VLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL------------------- 131 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl------------------- 131 (413)
|.|.|+||-||.....-+.+.. ++|+.+.- .++.+.+.+++++..+. .-++ .|-
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa-~~n~~~L~~q~~~f~p~---~v~i-~~~~~~~~l~~~~~~~~~~~~v 75 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSA-GSNIEKLAEQAREFKPK---YVVI-ADEEAYEELKKALPSKGPGIEV 75 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEE-SSTHHHHHHHHHHHT-S---EEEE-SSHHHHHHHHHHHHHTTSSSEE
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEc-CCCHHHHHHHHHHhCCC---EEEE-cCHHHHHHHHHHhhhcCCCCEE
Confidence 6799999999999999999987 67877764 34556666666666332 1111 111
Q ss_pred -CCHHHHHHHhhcCCCcEEEEcC
Q 015080 132 -GDAKAVNKFFSENAFDAVMHFA 153 (413)
Q Consensus 132 -~d~~~~~~~~~~~~~dvvi~~A 153 (413)
...+.+.++++..++|+|++..
T Consensus 76 ~~G~~~l~~~~~~~~~D~vv~Ai 98 (129)
T PF02670_consen 76 LSGPEGLEELAEEPEVDIVVNAI 98 (129)
T ss_dssp EESHHHHHHHHTHTT-SEEEE--
T ss_pred EeChHHHHHHhcCCCCCEEEEeC
Confidence 1345566666667899998765
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.13 Score=50.05 Aligned_cols=72 Identities=24% Similarity=0.285 Sum_probs=44.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH---HHHHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA---KAVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~~ 146 (413)
.+|+|+|+ |.||..++..+...|+ +|++++++..+ .+.++++ +.. .+ .|..+. +.+.++.. .++
T Consensus 193 ~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~r----~~~a~~~---Ga~-~~--i~~~~~~~~~~i~~~~~-~g~ 260 (371)
T cd08281 193 QSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNEDK----LALAREL---GAT-AT--VNAGDPNAVEQVRELTG-GGV 260 (371)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHH----HHHHHHc---CCc-eE--eCCCchhHHHHHHHHhC-CCC
Confidence 78999985 9999999988888899 68887643322 2222332 111 11 232332 23333332 369
Q ss_pred cEEEEcCc
Q 015080 147 DAVMHFAA 154 (413)
Q Consensus 147 dvvi~~Ag 154 (413)
|++|.+.|
T Consensus 261 d~vid~~G 268 (371)
T cd08281 261 DYAFEMAG 268 (371)
T ss_pred CEEEECCC
Confidence 99999987
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.071 Score=50.58 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=47.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC--HHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD--AKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~dv 148 (413)
.+|+|.|++|.+|..++..+...|.+|+++++...+ .+.++++ ++..+ .|..+ .+.+.+. ...++|+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~----~~~~~~~-----g~~~v-~~~~~~~~~~~~~~-~~~~~d~ 216 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADA----ADYLKKL-----GAKEV-IPREELQEESIKPL-EKQRWAG 216 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHH----HHHHHHc-----CCCEE-EcchhHHHHHHHhh-ccCCcCE
Confidence 689999999999999999999999999888654332 2222322 11111 12222 2333333 2356999
Q ss_pred EEEcCc
Q 015080 149 VMHFAA 154 (413)
Q Consensus 149 vi~~Ag 154 (413)
|+++.|
T Consensus 217 vld~~g 222 (326)
T cd08289 217 AVDPVG 222 (326)
T ss_pred EEECCc
Confidence 999876
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.28 Score=48.42 Aligned_cols=110 Identities=22% Similarity=0.261 Sum_probs=65.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCC-------------------chhhhhhhhhcCCCCceEEEEcc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGN-------------------IGAVKVLQELFPEPGRLQFIYAD 130 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~D 130 (413)
.+|+|.| +|++|.++++.|+..|. +++++|...-.. +.+.+.++++.+. -.++++.-+
T Consensus 21 s~VlliG-~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~-V~i~~~~e~ 98 (425)
T cd01493 21 AHVCLLN-ATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPD-VNGSAVEES 98 (425)
T ss_pred CeEEEEc-CcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCC-CEEEEEecc
Confidence 6799998 57799999999999998 688887432111 1123335555433 344555544
Q ss_pred CCCHH-HHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCC
Q 015080 131 LGDAK-AVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGE 202 (413)
Q Consensus 131 l~d~~-~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~ 202 (413)
+.+.. ...+++ ..+|+||-+-. .. .....+.+.|.+.++ .+|+++|.+.||.
T Consensus 99 ~~~ll~~~~~f~--~~fdiVI~t~~---------~~--------~~~~~L~~~c~~~~i-PlI~~~s~G~~G~ 151 (425)
T cd01493 99 PEALLDNDPSFF--SQFTVVIATNL---------PE--------STLLRLADVLWSANI-PLLYVRSYGLYGY 151 (425)
T ss_pred cchhhhhHHHHh--cCCCEEEECCC---------CH--------HHHHHHHHHHHHcCC-CEEEEecccCEEE
Confidence 43321 123445 56788874321 11 112235566777775 7899998887763
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.49 Score=42.62 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=68.4
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
|+.|+|.|||+ =++.|+++|...+..+++.+.. ....+..+. ......+--.+.+.+.+++++.++|.|
T Consensus 2 ~~~ilvlGGT~-Dar~la~~L~~~~~~~~~ss~t-~~g~~l~~~---------~~~~~~~G~l~~e~l~~~l~e~~i~ll 70 (257)
T COG2099 2 MMRILLLGGTS-DARALAKKLAAAPVDIILSSLT-GYGAKLAEQ---------IGPVRVGGFLGAEGLAAFLREEGIDLL 70 (257)
T ss_pred CceEEEEeccH-HHHHHHHHhhccCccEEEEEcc-cccccchhc---------cCCeeecCcCCHHHHHHHHHHcCCCEE
Confidence 47899999876 5899999999998555544322 222222211 122566788899999999999999999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIY 193 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~ 193 (413)
|...-. +. ..-++|.+++|++.++..+.|
T Consensus 71 IDATHP---------yA------a~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 71 IDATHP---------YA------ARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred EECCCh---------HH------HHHHHHHHHHHHHhCCcEEEE
Confidence 976321 11 344788999999999865544
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.11 Score=48.18 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=31.7
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEe
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVD 101 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~ 101 (413)
++.| |+|+|.|.|..+|..++..|.++|++|+++.
T Consensus 154 ~l~G-k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~h 188 (285)
T PRK14191 154 EIKG-KDVVIIGASNIVGKPLAMLMLNAGASVSVCH 188 (285)
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHCCCEEEEEe
Confidence 4567 9999999999999999999999999999863
|
|
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.085 Score=49.92 Aligned_cols=74 Identities=18% Similarity=0.123 Sum_probs=48.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH---HHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA---KAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~~d 147 (413)
.+++|+|++|.+|..++..+...|.+|+++++...+ .+.+++. + +..+ .|..+. +.+.+.....++|
T Consensus 144 ~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~----~~~~~~~---g--~~~~-~~~~~~~~~~~~~~~~~~~~~d 213 (324)
T cd08244 144 DVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAK----TALVRAL---G--ADVA-VDYTRPDWPDQVREALGGGGVT 213 (324)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHc---C--CCEE-EecCCccHHHHHHHHcCCCCce
Confidence 689999999999999999999999999888653322 2223322 1 1111 222232 2334444335699
Q ss_pred EEEEcCc
Q 015080 148 AVMHFAA 154 (413)
Q Consensus 148 vvi~~Ag 154 (413)
+++++.|
T Consensus 214 ~vl~~~g 220 (324)
T cd08244 214 VVLDGVG 220 (324)
T ss_pred EEEECCC
Confidence 9999976
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.29 Score=47.74 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=47.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
.+|+|.|+ |.+|..++..+...|++|++++...++ ..+.++++ ++..+ .|..+.+.+.+.. .++|+||
T Consensus 180 ~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~~---~~~~a~~l-----Ga~~~-i~~~~~~~v~~~~--~~~D~vi 247 (375)
T PLN02178 180 KRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSEK---EREAIDRL-----GADSF-LVTTDSQKMKEAV--GTMDFII 247 (375)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChHH---hHHHHHhC-----CCcEE-EcCcCHHHHHHhh--CCCcEEE
Confidence 78999985 999999999999999999888654322 12222222 12221 2333445555554 4689999
Q ss_pred EcCc
Q 015080 151 HFAA 154 (413)
Q Consensus 151 ~~Ag 154 (413)
.+.|
T Consensus 248 d~~G 251 (375)
T PLN02178 248 DTVS 251 (375)
T ss_pred ECCC
Confidence 9987
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.078 Score=51.01 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=49.8
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
.+.+ |++.|.| .|-||+++|+.|...|.+|++++|..+.... ..+. . +. ..+.-+........++++++ ..
T Consensus 156 ~l~g-ktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~--~~~~-~-~~-~~~~~~~~~~~~~~~L~ell--~~ 226 (347)
T PLN02928 156 TLFG-KTVFILG-YGAIGIELAKRLRPFGVKLLATRRSWTSEPE--DGLL-I-PN-GDVDDLVDEKGGHEDIYEFA--GE 226 (347)
T ss_pred CCCC-CEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCCCChhhh--hhhc-c-cc-ccccccccccCcccCHHHHH--hh
Confidence 5678 9999999 6999999999999999999999875322110 0000 0 00 00000000111344677778 56
Q ss_pred CcEEEEcCc
Q 015080 146 FDAVMHFAA 154 (413)
Q Consensus 146 ~dvvi~~Ag 154 (413)
.|+|+.+.-
T Consensus 227 aDiVvl~lP 235 (347)
T PLN02928 227 ADIVVLCCT 235 (347)
T ss_pred CCEEEECCC
Confidence 899998764
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.094 Score=43.26 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=32.5
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEec
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 102 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r 102 (413)
++.| |+|+|.|.+.-+|..++..|.++|++|+++++
T Consensus 25 ~~~g-k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~ 60 (140)
T cd05212 25 RLDG-KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60 (140)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEeCC
Confidence 3557 99999999999999999999999999999753
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.35 Score=48.37 Aligned_cols=75 Identities=24% Similarity=0.272 Sum_probs=49.9
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
.+ |+|+|+|+ |.+|.++++.|+++|++|.+.|...... ....+.+. ..++.+..++..+. .+ .++|
T Consensus 4 ~~-~~~~v~G~-g~~G~~~a~~l~~~g~~v~~~d~~~~~~--~~~~l~~~---~~gi~~~~g~~~~~-----~~--~~~d 69 (445)
T PRK04308 4 QN-KKILVAGL-GGTGISMIAYLRKNGAEVAAYDAELKPE--RVAQIGKM---FDGLVFYTGRLKDA-----LD--NGFD 69 (445)
T ss_pred CC-CEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCch--hHHHHhhc---cCCcEEEeCCCCHH-----HH--hCCC
Confidence 35 88999996 6999999999999999999988543321 11122211 12556655543221 22 4689
Q ss_pred EEEEcCccc
Q 015080 148 AVMHFAAVA 156 (413)
Q Consensus 148 vvi~~Ag~~ 156 (413)
.||...|+.
T Consensus 70 ~vv~spgi~ 78 (445)
T PRK04308 70 ILALSPGIS 78 (445)
T ss_pred EEEECCCCC
Confidence 999998875
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.051 Score=56.03 Aligned_cols=71 Identities=15% Similarity=0.267 Sum_probs=53.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
.+++|.| .|-+|++++++|.++|++|+++|.+++ ..+.+++ .+...+.+|.+|++.++++-- .++|.++
T Consensus 418 ~hiiI~G-~G~~G~~la~~L~~~g~~vvvId~d~~----~~~~~~~-----~g~~~i~GD~~~~~~L~~a~i-~~a~~vi 486 (558)
T PRK10669 418 NHALLVG-YGRVGSLLGEKLLAAGIPLVVIETSRT----RVDELRE-----RGIRAVLGNAANEEIMQLAHL-DCARWLL 486 (558)
T ss_pred CCEEEEC-CChHHHHHHHHHHHCCCCEEEEECCHH----HHHHHHH-----CCCeEEEcCCCCHHHHHhcCc-cccCEEE
Confidence 4789999 699999999999999999999975432 2233332 468899999999988876532 4678766
Q ss_pred Ec
Q 015080 151 HF 152 (413)
Q Consensus 151 ~~ 152 (413)
-+
T Consensus 487 v~ 488 (558)
T PRK10669 487 LT 488 (558)
T ss_pred EE
Confidence 33
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.23 Score=54.30 Aligned_cols=105 Identities=20% Similarity=0.224 Sum_probs=67.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC-------------------CCCchhhhhhhhhcCCCCceEEEEcc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-------------------RGNIGAVKVLQELFPEPGRLQFIYAD 130 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~D 130 (413)
.+|||.| .|++|.++++.|+..|. +|+++|... .+.+.+.+.++++.+. -.++.+..+
T Consensus 25 s~VLIiG-~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~-V~V~~~~~~ 102 (1008)
T TIGR01408 25 SNVLISG-MGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPY-VHVSSSSVP 102 (1008)
T ss_pred CcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCC-ceEEEeccc
Confidence 6899999 58899999999999998 677777432 1223344555565443 445555555
Q ss_pred CCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC-CEEEEeccceecC
Q 015080 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV-DTLIYSSTCATYG 201 (413)
Q Consensus 131 l~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~iV~~SS~~~~~ 201 (413)
++ .+.+ .++|+||.+-. .... ...+-++|++.+. -.+|+.++.+.||
T Consensus 103 l~-----~e~l--~~fdvVV~t~~---------~~~~--------~~~in~~cr~~~~~I~fI~~~~~G~~G 150 (1008)
T TIGR01408 103 FN-----EEFL--DKFQCVVLTEM---------SLPL--------QKEINDFCHSQCPPIAFISADVRGLFG 150 (1008)
T ss_pred CC-----HHHH--cCCCEEEECCC---------CHHH--------HHHHHHHHHHcCCCeEEEEEeecceEE
Confidence 53 2355 57899997532 1222 2235567777772 1678877766665
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.014 Score=54.73 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=33.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchh
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGA 110 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~ 110 (413)
++|.|.|+ |.+|..+|..|++.|++|++++++....+..
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~ 40 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQEQLESA 40 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCHHHHHHH
Confidence 68999995 9999999999999999999998765544433
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.25 Score=46.58 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=25.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIV 100 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~ 100 (413)
.+|.|.||||++|.+|++.|.++.. ++..+
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~ 33 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSI 33 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEE
Confidence 6899999999999999999999864 44443
|
|
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.1 Score=48.99 Aligned_cols=76 Identities=21% Similarity=0.162 Sum_probs=48.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC-HHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD-AKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~dvv 149 (413)
.+++|+|++|.+|..++..+...|++|+.+++...+ .+.+.+. +.. ..+..+-.+ .+.+.+.....++|.+
T Consensus 141 ~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~----~~~~~~~---g~~-~~~~~~~~~~~~~i~~~~~~~~~d~v 212 (323)
T cd08241 141 ETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEK----LALARAL---GAD-HVIDYRDPDLRERVKALTGGRGVDVV 212 (323)
T ss_pred CEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHH----HHHHHHc---CCc-eeeecCCccHHHHHHHHcCCCCcEEE
Confidence 789999999999999999999999999888754322 2222222 111 122222112 2334444443569999
Q ss_pred EEcCc
Q 015080 150 MHFAA 154 (413)
Q Consensus 150 i~~Ag 154 (413)
+++.|
T Consensus 213 ~~~~g 217 (323)
T cd08241 213 YDPVG 217 (323)
T ss_pred EECcc
Confidence 99876
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.29 Score=49.41 Aligned_cols=103 Identities=21% Similarity=0.206 Sum_probs=62.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC--------------H--
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD--------------A-- 134 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--------------~-- 134 (413)
.+|+|+| .|-+|...+..+...|++|+++|++..+. +..+++ +..++..|..+ .
T Consensus 166 ~kVlViG-aG~iGL~Ai~~Ak~lGA~V~a~D~~~~rl----e~aesl-----GA~~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 166 AKVLVIG-AGVAGLAAIGAAGSLGAIVRAFDTRPEVA----EQVESM-----GAEFLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHc-----CCeEEEeccccccccccchhhhcchhHH
Confidence 7999999 59999999999999999999988644332 233332 23333233221 1
Q ss_pred HHHHHHhhc--CCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 135 KAVNKFFSE--NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 135 ~~~~~~~~~--~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
+...+.+.+ .++|+||.++++...+. +. .-++..++.++. .+.||.++.
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg~~a----P~-------lit~~~v~~mkp--GgvIVdvg~ 286 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPGKPA----PK-------LITAEMVASMKP--GSVIVDLAA 286 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCcccC----cc-------hHHHHHHHhcCC--CCEEEEEcc
Confidence 111223222 46999999999743111 11 012445555653 357888876
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.15 Score=48.29 Aligned_cols=67 Identities=16% Similarity=0.254 Sum_probs=48.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
.+.+ |+|.|.| .|-||+.+++.|...|++|+++++..... ..+... ....++++++ ..
T Consensus 133 ~l~g-~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~--------------~~~~~~----~~~~~l~e~l--~~ 190 (312)
T PRK15469 133 HRED-FTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSW--------------PGVQSF----AGREELSAFL--SQ 190 (312)
T ss_pred CcCC-CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCC--------------CCceee----cccccHHHHH--hc
Confidence 4567 9999999 79999999999999999999998643221 111111 1234677778 67
Q ss_pred CcEEEEcCc
Q 015080 146 FDAVMHFAA 154 (413)
Q Consensus 146 ~dvvi~~Ag 154 (413)
.|+|+.+.-
T Consensus 191 aDvvv~~lP 199 (312)
T PRK15469 191 TRVLINLLP 199 (312)
T ss_pred CCEEEECCC
Confidence 899987764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 413 | ||||
| 2c20_A | 330 | Crystal Structure Of Udp-Glucose 4-Epimerase Length | 9e-61 | ||
| 1kvs_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 9e-60 | ||
| 1lrk_A | 338 | Crystal Structure Of Escherichia Coli Udp-Galactose | 2e-59 | ||
| 2udp_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-59 | ||
| 1lrj_A | 338 | Crystal Structure Of E. Coli Udp-Galactose 4-Epimer | 2e-59 | ||
| 1kvr_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 3e-59 | ||
| 1kvt_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 3e-59 | ||
| 1kvq_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 4e-59 | ||
| 1kvu_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 5e-59 | ||
| 1a9y_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 7e-59 | ||
| 1a9z_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 9e-59 | ||
| 1hzj_A | 348 | Human Udp-Galactose 4-Epimerase: Accommodation Of U | 1e-57 | ||
| 1i3k_A | 348 | Molecular Basis For Severe Epimerase-Deficiency Gal | 3e-57 | ||
| 1ek5_A | 348 | Structure Of Human Udp-Galactose 4-Epimerase In Com | 4e-57 | ||
| 1z45_A | 699 | Crystal Structure Of The Gal10 Fusion Protein Galac | 2e-55 | ||
| 3enk_A | 341 | 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase F | 2e-53 | ||
| 1gy8_A | 397 | Trypanosoma Brucei Udp-Galactose 4' Epimerase Lengt | 2e-50 | ||
| 2p5u_A | 311 | Crystal Structure Of Thermus Thermophilus Hb8 Udp-G | 2e-30 | ||
| 2pzk_A | 330 | Crystal Structure Of The Bordetella Bronchiseptica | 2e-24 | ||
| 3ehe_A | 313 | Crystal Structure Of Udp-Glucose 4 Epimerase (Gale- | 1e-21 | ||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 6e-21 | ||
| 3vps_A | 321 | Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5 | 2e-20 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 7e-19 | ||
| 4egb_A | 346 | 3.0 Angstrom Resolution Crystal Structure Of Dtdp-G | 1e-18 | ||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 2e-18 | ||
| 4ef7_B | 337 | Udp-Xylose Synthase Length = 337 | 7e-17 | ||
| 3ru9_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 9e-17 | ||
| 3ru7_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 9e-17 | ||
| 3lu1_A | 364 | Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4- | 9e-17 | ||
| 2hun_A | 336 | Crystal Structure Of Hypothetical Protein Ph0414 Fr | 1e-16 | ||
| 3ruc_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 1e-16 | ||
| 3sxp_A | 362 | Crystal Structure Of Helicobacter Pylori Adp-L-Glyc | 8e-16 | ||
| 2b69_A | 343 | Crystal Structure Of Human Udp-Glucoronic Acid Deca | 1e-15 | ||
| 1r6d_A | 337 | Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc | 3e-15 | ||
| 1r66_A | 337 | Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr | 4e-15 | ||
| 1orr_A | 347 | Crystal Structure Of Cdp-tyvelose 2-epimerase Compl | 5e-15 | ||
| 2pzj_A | 377 | Crystal Structure Of The Bordetella Bronchiseptica | 5e-15 | ||
| 2q1w_A | 333 | Crystal Structure Of The Bordetella Bronchiseptica | 7e-14 | ||
| 1kep_A | 348 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 2e-13 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 3e-13 | ||
| 1t2a_A | 375 | Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydr | 4e-13 | ||
| 2pk3_A | 321 | Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose | 6e-13 | ||
| 1db3_A | 372 | E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | 6e-12 | ||
| 2z1m_A | 345 | Crystal Structure Of Gdp-D-Mannose Dehydratase From | 3e-10 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 6e-10 | ||
| 1eq2_A | 310 | The Crystal Structure Of Adp-L-Glycero-D-Mannohepto | 2e-09 | ||
| 2x6t_A | 357 | Agme Bound To Adp-B-Mannose Length = 357 | 8e-09 | ||
| 4id9_A | 347 | Crystal Structure Of A Short-Chain DehydrogenaseRED | 5e-08 | ||
| 1z7b_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 2e-06 | ||
| 1z74_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 3e-06 | ||
| 1z73_A | 358 | Crystal Structure Of E. Coli Arna Dehydrogenase (de | 3e-06 | ||
| 1u9j_A | 358 | Crystal Structure Of E. Coli Arna (Pmri) Decarboxyl | 3e-06 | ||
| 1z75_A | 358 | Crystal Structure Of Arna Dehydrogenase (decarboxyl | 3e-06 | ||
| 3a1n_A | 317 | Crystal Structure Of L-Threonine Dehydrogenase From | 3e-06 | ||
| 1z7e_A | 660 | Crystal Structure Of Full Length Arna Length = 660 | 5e-06 | ||
| 2hrz_A | 342 | The Crystal Structure Of The Nucleoside-diphosphate | 7e-06 | ||
| 2bll_A | 345 | Apo-Structure Of The C-Terminal Decarboxylase Domai | 8e-06 | ||
| 3a9w_A | 317 | Crystal Structure Of L-Threonine Bound L-Threonine | 9e-06 | ||
| 1rpn_A | 335 | Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase | 2e-05 | ||
| 1e6u_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Le | 7e-05 | ||
| 1qrr_A | 394 | Crystal Structure Of Sqd1 Protein Complex With Nad | 1e-04 | ||
| 1i24_A | 404 | High Resolution Crystal Structure Of The Wild-Type | 1e-04 | ||
| 2gn4_A | 344 | Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehyd | 1e-04 | ||
| 1bsv_A | 321 | Gdp-Fucose Synthetase From Escherichia Coli Complex | 2e-04 | ||
| 1e7r_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y1 | 3e-04 | ||
| 2c5e_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 3e-04 | ||
| 2c59_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 3e-04 | ||
| 1e7q_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S1 | 4e-04 | ||
| 1i2b_A | 404 | Crystal Structure Of Mutant T145a Sqd1 Protein Comp | 4e-04 | ||
| 1e7s_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K1 | 5e-04 | ||
| 3slg_A | 372 | Crystal Structure Of Pbgp3 Protein From Burkholderi | 5e-04 | ||
| 2c54_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 6e-04 | ||
| 3m2p_A | 311 | The Crystal Structure Of Udp-N-Acetylglucosamine 4- | 6e-04 | ||
| 1bws_A | 321 | Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose E | 6e-04 | ||
| 2c5a_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 9e-04 |
| >pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330 | Back alignment and structure |
|
| >pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338 | Back alignment and structure |
|
| >pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338 | Back alignment and structure |
|
| >pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348 | Back alignment and structure |
|
| >pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348 | Back alignment and structure |
|
| >pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348 | Back alignment and structure |
|
| >pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 | Back alignment and structure |
|
| >pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From Burkholderia Pseudomallei Length = 341 | Back alignment and structure |
|
| >pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase Length = 397 | Back alignment and structure |
|
| >pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311 | Back alignment and structure |
|
| >pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmg In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313 | Back alignment and structure |
|
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydratase, Tuna, Involved In Tunicamycin Biosynthesis Length = 321 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str. Ames In Complex With Nad Length = 346 | Back alignment and structure |
|
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
| >pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364 | Back alignment and structure |
|
| >pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336 | Back alignment and structure |
|
| >pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad, Hp0859) Length = 362 | Back alignment and structure |
|
| >pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase Length = 343 | Back alignment and structure |
|
| >pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337 | Back alignment and structure |
|
| >pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337 | Back alignment and structure |
|
| >pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed With Nad And Cdp Length = 347 | Back alignment and structure |
|
| >pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmf In Complex With Nad+ Length = 377 | Back alignment and structure |
|
| >pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333 | Back alignment and structure |
|
| >pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound Length = 348 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
| >pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase Length = 375 | Back alignment and structure |
|
| >pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose Reductase Length = 321 | Back alignment and structure |
|
| >pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | Back alignment and structure |
|
| >pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From Aquifex Aeolicus Vf5 Length = 345 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6- Epimerase Length = 310 | Back alignment and structure |
|
| >pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose Length = 357 | Back alignment and structure |
|
| >pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE SUPERFAMILY Protein From Agrobacterium Tumefaciens (Target Efi-506441) With Bound Nad, Monoclinic Form 1 Length = 347 | Back alignment and structure |
|
| >pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619e Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619y Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase (decarboxylase) Domain, S433a Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase Domain Length = 358 | Back alignment and structure |
|
| >pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase) Domain, R619m Mutant Length = 358 | Back alignment and structure |
|
| >pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From Hyperthermophilic Archaeon Thermoplasma Volcanium Length = 317 | Back alignment and structure |
|
| >pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 | Back alignment and structure |
|
| >pdb|2HRZ|A Chain A, The Crystal Structure Of The Nucleoside-diphosphate-sugar Epimerase From Agrobacterium Tumefaciens Length = 342 | Back alignment and structure |
|
| >pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of Arna Length = 345 | Back alignment and structure |
|
| >pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic Archaeon Thermoplasma Volcanium Length = 317 | Back alignment and structure |
|
| >pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In Complexes With Gdp And Nadph Length = 335 | Back alignment and structure |
|
| >pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Length = 321 | Back alignment and structure |
|
| >pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And Udp- Glucose Length = 394 | Back alignment and structure |
|
| >pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein Sqd1, With Nad And Udp-Glucose Length = 404 | Back alignment and structure |
|
| >pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase In Complex With Nadph And Udp-Glcnac Length = 344 | Back alignment and structure |
|
| >pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With Nadph Length = 321 | Back alignment and structure |
|
| >pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e Length = 321 | Back alignment and structure |
|
| >pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a Length = 321 | Back alignment and structure |
|
| >pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex With Nad And Udp-SulfoquinovoseUDP-Glucose Length = 404 | Back alignment and structure |
|
| >pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r Length = 321 | Back alignment and structure |
|
| >pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia Pseudomallei Length = 372 | Back alignment and structure |
|
| >pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K178r, With Gdp-Beta-L-Gulose And Gdp-4-Keto-Beta-L-Gulose Bound In Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine 4-Epimerase From Bacillus Cereus Length = 311 | Back alignment and structure |
|
| >pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In The Biosynthesis Of Gdp-L- Fucose Length = 321 | Back alignment and structure |
|
| >pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), Y174f, With Gdp-Beta-L-Galactose Bound In The Active Site Length = 379 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 | Back alignment and structure |
|---|
Score = 455 bits (1174), Expect = e-161
Identities = 134/340 (39%), Positives = 182/340 (53%), Gaps = 18/340 (5%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+ GGAGYIGSHA +L+ + V +VDNL G+ A+ +F DL
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAI---------TEGAKFYNGDLR 54
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D + F++ +AVMHFAA + VG S PL+YY+N L +LE M VD I
Sbjct: 55 DKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFI 114
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIG 252
+SST ATYGE + ITEET P N YG+ K E ++ +S+ S++ I RYFNV G
Sbjct: 115 FSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAG 174
Query: 253 SDPEGRLGEAPRPE--LREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310
+ P G +GE RPE L I A G + + G DY+T DGTC+RDYI V
Sbjct: 175 ATPNGIIGEDHRPETHL-----IPLVL-QVALGQREKIMMFGDDYNTPDGTCIRDYIHVE 228
Query: 311 DLVDAHVKALER-AQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 369
DLV AH L+ + YN+G G G SVKE V+A ++ T+ I PRR GD A
Sbjct: 229 DLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPA 288
Query: 370 EVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
+ + K + +L W +Y N++ +E AW W + GY
Sbjct: 289 RLVASSQKAKEKLGWDPRYVNVKTIIEHAWNWHQKQPNGY 328
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 424 bits (1092), Expect = e-148
Identities = 125/384 (32%), Positives = 183/384 (47%), Gaps = 49/384 (12%)
Query: 73 VLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVL--------------QEL 117
VLV GGAGYIGSH LL+D+ + V IVD+L + + V +
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKP 64
Query: 118 FPEPGRLQFIYADLGDAKAVNKFFSENA-FDAVMHFAAVAYVGESTLDPLKYYHNITSNT 176
D+ + +N F+ + DAV+H A VGES DPLKYY N
Sbjct: 65 PWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGI 124
Query: 177 LVVLESMARHGVDTLIYSSTCATYGEP-------EKMPITEETPQAPINPYGKAKKMAED 229
L +L++M H D +I+SS+ A +G P PI ++P +PYG++K +AE
Sbjct: 125 LRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAER 184
Query: 230 IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREH---------------GRIS 274
+I D ++ + + LRYFN G+ +G +GE + H +
Sbjct: 185 MIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGS--THLIPIILGRVMSDIAPDQR- 241
Query: 275 GACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALER-------AQPKK 327
+ + GTDY T DGTCVRDY+ V DL AH+ AL+ + K
Sbjct: 242 -LTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKY 300
Query: 328 VGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAK 387
++N+GT +G SV+E +E +K T I V RR GD A + + K R L W K
Sbjct: 301 FSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPK 360
Query: 388 YTNLQESLEIAWRWQKSHRGGYAS 411
Y L+ +E +W++Q++H GYAS
Sbjct: 361 YDTLEAIMETSWKFQRTHPNGYAS 384
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341 | Back alignment and structure |
|---|
Score = 380 bits (979), Expect = e-131
Identities = 129/349 (36%), Positives = 181/349 (51%), Gaps = 28/349 (8%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG-RLQFIYADL 131
+LVTGGAGYIGSH A+ LL Y V I DNL A+ ++++ G F D+
Sbjct: 8 ILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKI---TGKTPAFHETDV 64
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
D +A+ + F + A +HFAA+ VGES P++YY N + L +L M V +
Sbjct: 65 SDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRI 124
Query: 192 IYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNV 250
++SS+ YG PE+ PI E P + NPYG+ K MAE I+ D + V LRYFN
Sbjct: 125 VFSSSATVYGVPERSPIDETFPLSATNPYGQTKLMAEQILRDVEAADPSWRVATLRYFNP 184
Query: 251 IGSDPEGRLGEAPR-------PELREHGRISGACFDA--ARGIIAGLKVKGTDYSTADGT 301
+G+ G +GE P P + A A G + L+V G+DY T DGT
Sbjct: 185 VGAHESGLIGEDPAGIPNNLMP------------YVAQVAVGKLEKLRVFGSDYPTPDGT 232
Query: 302 CVRDYIDVNDLVDAHVKALERAQPKK-VGIYNVGTGKGRSVKEFVEACKKATSANIKVIY 360
VRDYI V DL H+ AL+ + + N+GTG+G SV E V A +KA+ +
Sbjct: 233 GVRDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYEL 292
Query: 361 EPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
RRPGD AE Y++P + W A+ L+ WRWQ+++ G+
Sbjct: 293 VARRPGDVAECYANPAAAAETIGWKAERD-LERMCADHWRWQENNPRGF 340
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338 | Back alignment and structure |
|---|
Score = 377 bits (971), Expect = e-130
Identities = 134/351 (38%), Positives = 184/351 (52%), Gaps = 29/351 (8%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG-RLQFIYADL 131
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L G F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL---GGKHPTFVEGDI 59
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
+ + + ++A D V+HFA + VGES PL+YY N + TL ++ +M V
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 192 IYSSTCATYGEPEKMPITEETP-QAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFN 249
I+SS+ YG+ K+P E P P +PYGK+K M E I+ D K D ++ +LRYFN
Sbjct: 120 IFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFN 179
Query: 250 VIGSDPEGRLGEAPR-------PELREHGRISGACFDA--ARGIIAGLKVKGTDYSTADG 300
+G+ P G +GE P+ P + A A G L + G DY T DG
Sbjct: 180 PVGAHPSGDMGEDPQGIPNNLMP------------YIAQVAVGRRDSLAIFGNDYPTEDG 227
Query: 301 TCVRDYIDVNDLVDAHVKALERAQPKK-VGIYNVGTGKGRSVKEFVEACKKATSANIKVI 359
T VRDYI V DL D HV A+E+ K V IYN+G G G SV + V A KA +
Sbjct: 228 TGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYH 287
Query: 360 YEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYA 410
+ PRR GD ++D +K ELNW T L E + W WQ H GY
Sbjct: 288 FAPRREGDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGYP 337
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 376 bits (969), Expect = e-130
Identities = 84/355 (23%), Positives = 140/355 (39%), Gaps = 49/355 (13%)
Query: 59 SPSPFSQHEEGVT------HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVK 112
S H G+ +L+TGGAG +GS+ L + + ++DN + G +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVL- 61
Query: 113 VLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNI 172
P L I + DA + + F V+H AA + D +
Sbjct: 62 ------PPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYKDPD---DWAEDAATN 112
Query: 173 TSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIIL 232
++ V ++ ++ GV L+ T YG P +PI ++P AP YG +K E ++
Sbjct: 113 VQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPTAPFTSYGISKTAGEAFLM 172
Query: 233 DFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292
D+ V+ LR NV G P +G P + + AG K
Sbjct: 173 MS----DVPVVSLRLANVTG--PRLAIGPIPT---------------FYKRLKAGQKCFC 211
Query: 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKAT 352
+D VRD++D++D + +L+ +P G++NV TG+G S+KE +
Sbjct: 212 SD-------TVRDFLDMSDFLAIADLSLQEGRP--TGVFNVSTGEGHSIKEVFDVVLDYV 262
Query: 353 SANIKVIYE--PRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
A + D V DP+K E W AK ++++ W +
Sbjct: 263 GATLAEPVPVVAPGADDVPSVVLDPSKTETEFGWKAKVD-FKDTITGQLAWYDKY 316
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 | Back alignment and structure |
|---|
Score = 369 bits (951), Expect = e-127
Identities = 134/358 (37%), Positives = 187/358 (52%), Gaps = 35/358 (9%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS------RGNIGAVKVLQELFPEPG-RLQ 125
VLVTGGAGYIGSH L LL+ Y ++DN +++ +QEL G ++
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL---TGRSVE 61
Query: 126 FIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMAR 185
F D+ D A+ + F + +F AV+HFA + VGES PL YY + T+ +LE M
Sbjct: 62 FEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKA 121
Query: 186 HGVDTLIYSSTCATYGEPEKMPITEETP-QAPINPYGKAKKMAEDIILDFSK-NSDMAVM 243
HGV L++SS+ YG P+ +P+ E P NPYGK+K E++I D + + +
Sbjct: 122 HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAV 181
Query: 244 ILRYFNVIGSDPEGRLGEAPR-------PELREHGRISGACFDA--ARGIIAGLKVKGTD 294
+LRYFN G+ G +GE P+ P + + A G L V G D
Sbjct: 182 LLRYFNPTGAHASGCIGEDPQGIPNNLMP------------YVSQVAIGRREALNVFGND 229
Query: 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQPKK-VGIYNVGTGKGRSVKEFVEACKKATS 353
Y T DGT VRDYI V DL H+ AL + + + IYN+GTG G SV + V+A +KA+
Sbjct: 230 YDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASG 289
Query: 354 ANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
I RR GD A Y++P+ + EL WTA L E WRWQK + G+ +
Sbjct: 290 KKIPYKVVARREGDVAACYANPSLAQEELGWTAALG-LDRMCEDLWRWQKQNPSGFGT 346
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 363 bits (934), Expect = e-125
Identities = 104/335 (31%), Positives = 149/335 (44%), Gaps = 29/335 (8%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGGAG+IGSH LL V ++DNL+ G V P + F DL
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENV---------PKGVPFFRVDLR 53
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D + V + F E V H AA A V S DP+ + L +LE+ ++GV+ L+
Sbjct: 54 DKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLV 113
Query: 193 YSST-CATYGE-PEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNV 250
++ST A YGE PE E P P +PY +K E + + ++ + + LRY NV
Sbjct: 114 FASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNV 173
Query: 251 IGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310
G + P E G ++ +G + + D CVRDY+ V
Sbjct: 174 YGP------RQDPHG---EAGVVAIFAERVLKG--LPVTLYARKTPG-DEGCVRDYVYVG 221
Query: 311 DLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAE 370
D+ +AH AL + GIYNVGTG+G + +E + A +A +V P RPGD
Sbjct: 222 DVAEAHALALFSLE----GIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLER 277
Query: 371 VYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
P K+ W K QE + + +
Sbjct: 278 SVLSPLKLM-AHGWRPKVG-FQEGIRLTVDHFRGA 310
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 369 bits (948), Expect = e-122
Identities = 128/357 (35%), Positives = 178/357 (49%), Gaps = 35/357 (9%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGGAGYIGSH + L+++ Y + DNLS +V L+ L + F DL
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKH--HIPFYEVDLC 71
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D K + K F E D+V+HFA + VGEST PL+YYHN T+V+LE M ++ V +
Sbjct: 72 DRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFV 131
Query: 193 YSSTCATYGE----PEKMPITEETPQAPINPYGKAKKMAEDIILDFSK--NSDMAVMILR 246
+SS+ YG+ P +PI EE P P NPYG K E+I+ D ILR
Sbjct: 132 FSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILR 191
Query: 247 YFNVIGSDPEGRLGEAPR-------PELREHGRISGACFDA--ARGIIAGLKVKGTDYST 297
YFN IG+ P G +GE P P + A A G L + G DY +
Sbjct: 192 YFNPIGAHPSGLIGEDPLGIPNNLLP------------YMAQVAVGRREKLYIFGDDYDS 239
Query: 298 ADGTCVRDYIDVNDLVDAHVKALER-----AQPKKVGIYNVGTGKGRSVKEFVEACKKAT 352
DGT +RDYI V DL H+ AL+ +N+G+GKG +V E A KA+
Sbjct: 240 RDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKAS 299
Query: 353 SANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
++ RR GD + + P + + EL W + +++S + W+W + GY
Sbjct: 300 GIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQ-VEDSCKDLWKWTTENPFGY 355
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 330 bits (849), Expect = e-112
Identities = 87/339 (25%), Positives = 140/339 (41%), Gaps = 41/339 (12%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
++VTGGAG+IGSH +L++ Y V +VDNLS G V + DL
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV---------NPSAELHVRDLK 53
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D D V HFAA V ST +P+ +++ T VLE + GV T++
Sbjct: 54 DYSWGAGIK----GDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVV 109
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIG 252
++S+ YG+ + +P EE P PI+ YG AK E + +++ + + +RY NV+G
Sbjct: 110 FASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVG 169
Query: 253 SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDL 312
+ +LR + + L+V G DGT + Y+ V D
Sbjct: 170 PRLRHGVIYDFIMKLRRNPNV--------------LEVLG------DGTQRKSYLYVRDA 209
Query: 313 VDAHVKALERAQP--KKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRR------ 364
V+A + A ++ + NVG V + + + ++ P
Sbjct: 210 VEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGW 269
Query: 365 PGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQK 403
PGD + TK+ W T+ + + A K
Sbjct: 270 PGDVKYMTLAVTKLMKLTGWRPTMTSAEAVKKTAEDLAK 308
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 326 bits (839), Expect = e-111
Identities = 85/333 (25%), Positives = 139/333 (41%), Gaps = 40/333 (12%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
++VTGGAG+IGSH +L + + ++DNLS GN V + + ADL
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSES-NEIVVIDNLSSGNEEFV---------NEAARLVKADL 52
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
+ + V H AA V +P + Y N T +LE+M + GV +
Sbjct: 53 AADDIKDYLKG---AEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRI 109
Query: 192 IYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVI 251
+++ST YGE + +P E+ P PI+ YG +K E +I + DM I R+ NVI
Sbjct: 110 VFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESYCHTFDMQAWIYRFANVI 169
Query: 252 GSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVND 311
G R + L++ G +G + YI ++D
Sbjct: 170 G----------RRS--THGVIYD--FIMKLKRNPEELEILG------NGEQNKSYIYISD 209
Query: 312 LVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEP---RRPGDY 368
VDA + L ++V I+N+G+ VK E + + + + GD
Sbjct: 210 CVDAMLFGLRG--DERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDV 267
Query: 369 AEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
+ K++ L W +Y +E++ +A R
Sbjct: 268 PVMLLSIEKLK-RLGWKPRYN-SEEAVRMAVRD 298
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 265 bits (678), Expect = 3e-85
Identities = 84/377 (22%), Positives = 124/377 (32%), Gaps = 53/377 (14%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG--------- 122
V+V GG GY G AL L K +Y V IVDNL R L+ L P
Sbjct: 13 RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK 72
Query: 123 -----RLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDP---LKYYHNITS 174
++ D+ D + + + F D+V+HF S +D + HN
Sbjct: 73 ALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVI 132
Query: 175 NTLVVLESMARHGVDT-LIYSSTCATYGEPEK------MPITEE-------TPQAPINPY 220
TL VL ++ G + L+ T YG P + IT P+ + Y
Sbjct: 133 GTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFY 192
Query: 221 GKAKKMAEDIILDFSKNSDMAVMILRYFNVIGS--DPEGRLGEAPRPELREH---GRISG 275
+K I K + L V G D E + ++
Sbjct: 193 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNR 252
Query: 276 ACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALE-RAQPKKVGIYNVG 334
C AA G L V G R Y+D+ D V A+ A+ + ++N
Sbjct: 253 FCVQAAVG--HPLTVYGKGG------QTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQF 304
Query: 335 TGKGRSVKEFVEACKKAT-----SANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYT 389
T + SV E KA + PR + + TK+ EL Y
Sbjct: 305 TEQ-FSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHYL 362
Query: 390 NLQESLEIAWRWQKSHR 406
L+ + +
Sbjct: 363 -SDSLLDSLLNFAVQFK 378
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 2e-84
Identities = 81/347 (23%), Positives = 139/347 (40%), Gaps = 54/347 (15%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V +TG G IGSH A LL+ +V +DN + G + + L F+ +
Sbjct: 24 VFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHL-------KDHPNLTFVEGSIA 76
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN---TLVVLESMARHGVD 189
D VN+ + DAV+H AA P +Y++ +N V+++ ++ V
Sbjct: 77 DHALVNQLIGDLQPDAVVHTAASYKD------PDDWYNDTLTNCVGGSNVVQAAKKNNVG 130
Query: 190 TLIYSSTCATYG-EPEKMPITEETPQAPIN-PYGKAKKMAEDIILDFSKNSDMAVMILRY 247
+Y T YG +P + P+ + P+ P N Y +K E D+ + S + + R
Sbjct: 131 RFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANE----DYLEYSGLDFVTFRL 186
Query: 248 FNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307
NV+G P G P F + + G K RD++
Sbjct: 187 ANVVG--PRNVSGPLPI-------------F--FQRLSEGKKCF-------VTKARRDFV 222
Query: 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKAT--SANIKVIYEPRRP 365
V DL A V+A++ G Y+ +G ++KE +A +A + + P
Sbjct: 223 FVKDLARATVRAVDGV---GHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGP 279
Query: 366 GDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH--RGGYA 410
D + DP++ + T L+E++ A + + + GGY
Sbjct: 280 DDAPSILLDPSRTIQDFGKIEF-TPLKETVAAAVAYFREYGVSGGYT 325
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 244 bits (625), Expect = 1e-78
Identities = 55/338 (16%), Positives = 112/338 (33%), Gaps = 47/338 (13%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
+ VTGG G++G + + D I+ + +
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNK---------------AINDYEYRV 48
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
D + N DAV+H AA + + N T + ++ + + +
Sbjct: 49 SDYTLEDLINQLNDVDAVVHLAATRGSQGKISEF---HDNEIL-TQNLYDACYENNISNI 104
Query: 192 IYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVI 251
+Y+ST + Y + +P E+ P YG +K E I +S+ + + LR+ ++
Sbjct: 105 VYASTISAYSDETSLPWNEKELPLPDLMYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLY 164
Query: 252 GSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG--LKVKGTDYSTADGTCVRDYIDV 309
G + + R G L + + R+++
Sbjct: 165 G----------FN------EKNNYMINRFFRQAFHGEQLTLHA------NSVAKREFLYA 202
Query: 310 NDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY-EPRRPGDY 368
D + + AL++ K G +N+G+G + E A ++ P
Sbjct: 203 KDAAKSVIYALKQ--EKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGI 260
Query: 369 AEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHR 406
Y D +K + L+++ Y ++E +
Sbjct: 261 HSSYMDSSKAKELLDFSTDYN-FATAVEEIHLLMRGLD 297
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 241 bits (617), Expect = 8e-77
Identities = 85/344 (24%), Positives = 141/344 (40%), Gaps = 34/344 (9%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG---NIGAVKVLQELFPEPGRLQFIYA 129
L+TG AG+IGS+ LLK +V +DN + G N+ V+ L +FI
Sbjct: 30 WLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWS-NFKFIQG 88
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH-NITSNTLVVLESMARHGV 188
D+ + N + D V+H AA+ V S DP+ NI L +L + V
Sbjct: 89 DIRNLDDCNNACAG--VDYVLHQAALGSVPRSINDPITSNATNIDG-FLNMLIAARDAKV 145
Query: 189 DTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYF 248
+ Y+++ +TYG+ +P E+T P++PY K + E FS+ + + LRYF
Sbjct: 146 QSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYF 205
Query: 249 NVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG--LKVKGTDYSTADGTCVRDY 306
NV G +G + +I G + + G DG RD+
Sbjct: 206 NVFG------------RRQDPNGAYAAVIPKWTSSMIQGDDVYING------DGETSRDF 247
Query: 307 IDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEA-----CKKATSANIKVIYE 361
+ + V A++ A + +YN+ G S+ + A + S + + +Y
Sbjct: 248 CYIENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYR 307
Query: 362 PRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
R GD +D +K L + KY + + +A W
Sbjct: 308 DFREGDVRHSLADISKAAKLLGYAPKYD-VSAGVALAMPWYIMF 350
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 234 bits (600), Expect = 2e-74
Identities = 68/351 (19%), Positives = 118/351 (33%), Gaps = 50/351 (14%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRGNIGAVKVLQELFPEPGRL 124
H+ + G AG +G RL+KD + T++D G +
Sbjct: 16 HIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGF---------SGAV 66
Query: 125 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMA 184
ADL K E D + H AA+ GE+ LD K Y T + +++
Sbjct: 67 DARAADLSAPGEAEKLV-EARPDVIFHLAAIV-SGEAELDFDKGYRINLDGTRYLFDAIR 124
Query: 185 RHGVDT-----LIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSD 239
++++S+ A +G P PI +E P+ YG K + E ++ D+S+
Sbjct: 125 IANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKAICELLLSDYSRRGF 184
Query: 240 MAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG--TDYST 297
+ +R + G+ A G S + G A L V +
Sbjct: 185 FDGIGIRLPTICI--RPGKPNAA------ASGFFSNILREPLVGQEAVLPVPESIRHWHA 236
Query: 298 ADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIK 357
+ + V I + V + G +V E +EA +K
Sbjct: 237 SPRSAVGFLIHGAMIDVEKVGPRR--------NLS-MPGLSATVGEQIEALRKVA-GEKA 286
Query: 358 VIYEPRRPGDYAE--VYSDPTKIR----LELNWTAKYTNLQESLEIAWRWQ 402
V R P + EL +TA+ + +E +++ +
Sbjct: 287 VALIRREPNEMIMRMCEGWAPGFEAKRARELGFTAESS-FEEIIQVHIEDE 336
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 2e-72
Identities = 85/345 (24%), Positives = 138/345 (40%), Gaps = 34/345 (9%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG---NIGAVKVLQELFPEPGRLQFIY 128
L+TG AG+IGS+ +LLK + V +DN S G N+ VK L R FI
Sbjct: 27 TWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWS-RFCFIE 85
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH-NITSNTLVVLESMARHG 187
D+ D + D V+H AA+ V S +DP+ NIT L +L +
Sbjct: 86 GDIRDLTTCEQVMKG--VDHVLHQAALGSVPRSIVDPITTNATNITG-FLNILHAAKNAQ 142
Query: 188 VDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRY 247
V + Y+++ +TYG+ +P EE P++PY K + E +++ + LRY
Sbjct: 143 VQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRY 202
Query: 248 FNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG--LKVKGTDYSTADGTCVRD 305
FNV G P I + ++ G + + G DG RD
Sbjct: 203 FNVFG--RRQ------DPNGAYAAVIP--KW--TAAMLKGDDVYING------DGETSRD 244
Query: 306 YIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKAT-----SANIKVIY 360
+ +++++ ++ + K IYNV G ++ E + + Y
Sbjct: 245 FCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKY 304
Query: 361 EPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
R GD +D TK L + ++E L ++ W
Sbjct: 305 REFRSGDVRHSQADVTKAIDLLKYRPN-IKIREGLRLSMPWYVRF 348
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 226 bits (579), Expect = 2e-71
Identities = 81/336 (24%), Positives = 135/336 (40%), Gaps = 43/336 (12%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+TGGAG+IG H A L+ VT++D+L + + + +P + DL
Sbjct: 10 ILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVL-ELEERDLS 68
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D V H A+ V S PL Y N+ S +L GV ++
Sbjct: 69 D------------VRLVYHLASHKSVPRSFKQPLDYLDNVDS-GRHLLALCTSVGVPKVV 115
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDM-AVMILRYFNVI 251
STC YG+ + +P E++P +P +PY +K E + + S V I+R+FNV
Sbjct: 116 VGSTCEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVY 175
Query: 252 GSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG--LKVKGTDYSTADGTCVRDYIDV 309
G P R ++ L V+G DG RD+ +
Sbjct: 176 G----------PG------ERPDALVPRLCANLLTRNELPVEG------DGEQRRDFTYI 213
Query: 310 NDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 369
D+VD V R P + N G+G+ SV + + + + +V + RP +
Sbjct: 214 TDVVDKLVALANRPLP---SVVNFGSGQSLSVNDVIRILQATSP-AAEVARKQPRPNEIT 269
Query: 370 EVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
E +D ++ + ++E + + W +S
Sbjct: 270 EFRADTALQTRQIGERSGGIGIEEGIRLTLEWWQSR 305
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 219 bits (561), Expect = 6e-69
Identities = 73/337 (21%), Positives = 127/337 (37%), Gaps = 41/337 (12%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRG----NIGAVKVLQELFPEPGRLQFI 127
++VTGGAG+IGS+ L + +VDNL G N+ + + + E
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKE------- 54
Query: 128 YADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG 187
D + F + +A+ H A + E + +N + +L
Sbjct: 55 --DFLIQIMAGEEFGD--VEAIFHEGACSSTTEWDGKYM-MDNNYQY-SKELLHYCLERE 108
Query: 188 VDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRY 247
+ +Y+S+ ATYG I + P+N YG +K + ++ + ++ ++ RY
Sbjct: 109 IP-FLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRY 167
Query: 248 FNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307
FNV G P E G ++ F + G K RD++
Sbjct: 168 FNVYG--P----REGH------KGSMASVAFHLNTQLNNGESPK-LFEG--SENFKRDFV 212
Query: 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKA-TSANIKVI--YEPRR 364
V D+ D ++ LE GI+N+GTG+ S + +A I+ I + +
Sbjct: 213 YVGDVADVNLWFLEN---GVSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLK 269
Query: 365 PGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
A +D T +R T + E + W
Sbjct: 270 GRYQAFTQADLTNLRAAGYDKPFKT-VAEGVTEYMAW 305
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 214 bits (546), Expect = 3e-66
Identities = 70/338 (20%), Positives = 124/338 (36%), Gaps = 43/338 (12%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
++VTGGAG+IGS+ L + +VDNL G L +L D
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT--KFVNLVDLNI---ADYMDKEDF 103
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
+ F + +A+ H A + E + +N + +L +
Sbjct: 104 LIQIMAGEEFGD--VEAIFHEGACSSTTEWDGKYM-MDNNYQY-SKELLHYCLEREI-PF 158
Query: 192 IYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVI 251
+Y+S+ ATYG I + P+N +G +K + ++ + ++ ++ RYFNV
Sbjct: 159 LYASSAATYGGRTSDFIESREYEKPLNVFGYSKFLFDEYVRQILPEANSQIVGFRYFNVY 218
Query: 252 G--SDPEGRLGE-APR--PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306
G +G + A +L + G RD+
Sbjct: 219 GPREGHKGSMASVAFHLNTQLNNGESPK---------LFEG-----------SENFKRDF 258
Query: 307 IDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKA-TSANIKVIYEPRRP 365
+ V D+ D ++ LE GI+N+GTG+ S + +A I+ I P +
Sbjct: 259 VYVGDVADVNLWFLEN---GVSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKL 315
Query: 366 GDYAEVYS--DPTKIRLELNWTAKYTNLQESLEIAWRW 401
+ ++ D T +R T + E + W
Sbjct: 316 KGRYQAFTQADLTNLRAAGYDKPFKT-VAEGVTEYMAW 352
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 5e-65
Identities = 80/368 (21%), Positives = 138/368 (37%), Gaps = 38/368 (10%)
Query: 60 PSPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELF 118
P + + T+V+V GGAG++GS+ RLL+ +V +VDNL V
Sbjct: 22 PVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINV------- 74
Query: 119 PEPGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLV 178
P+ ++F + D + E +D V H A S DPL + N T TL
Sbjct: 75 PDHPAVRFSETSITDDALLASLQDE--YDYVFHLATYHGNQSSIHDPLADHENNTLTTLK 132
Query: 179 VLESMARH-GVDTLIYSSTCATYGEPEKMPITEE------TPQAPINPYGKAKKMAEDII 231
+ E + + ++YS+ + E + +PY +K E
Sbjct: 133 LYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYS 192
Query: 232 LDFSKNSDMAVMILRYFNVIG--SDPEGRLGEAPRPELREHGRISGACFDAARG---IIA 286
+ + K + + R+ NV G P + A +G +
Sbjct: 193 VYYHKQHQLPTVRARFQNVYGPGEILGAGRWRG-TPATVWRNVTPTFIYKALKGMPLPLE 251
Query: 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVE 346
G RD+I V D+ + + P G+YN+ +GK S+ +
Sbjct: 252 N-----------GGVATRDFIFVEDVANGLIACAADGTP--GGVYNIASGKETSIADLAT 298
Query: 347 ACKKATSANIKVIYEPRRPGD-YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
+ T N ++ P+RP D + + P K R EL ++A + + + L W K++
Sbjct: 299 KINEITGNNTELDRLPKRPWDNSGKRFGSPEKARRELGFSADVS-IDDGLRKTIEWTKAN 357
Query: 406 RGGYASII 413
I+
Sbjct: 358 LAVIEQIM 365
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 206 bits (527), Expect = 2e-63
Identities = 76/337 (22%), Positives = 136/337 (40%), Gaps = 37/337 (10%)
Query: 73 VLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNIGAVKVLQELFP----EPGRLQF 126
+L+TGGAG++GS+ A ++ +V ++D + + L + +
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEV 72
Query: 127 IYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH 186
I AD+ + + + + FD + H AAV+ + L +LE
Sbjct: 73 IAADINNPLDLRRLEKLH-FDYLFHQAAVSDTTML--NQELVMKTNYQAFLNLLEIARSK 129
Query: 187 GVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILR 246
+IY+S+ YG + P ++P N YG +K ++ +L S ++ LR
Sbjct: 130 KAK-VIYASSAGVYGNTK-APNVVGKNESPENVYGFSKLCMDEFVLSHSNDNVQV--GLR 185
Query: 247 YFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK--GTDYSTADGTCVR 304
YFNV G PR E + + A G +A +VK G +R
Sbjct: 186 YFNVYG----------PR-E-FYKEKTASMVLQLALGAMAFKEVKLFE------FGEQLR 227
Query: 305 DYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRR 364
D++ + D++ A+VKA++ +K G+YNVG + RS E V K+ +
Sbjct: 228 DFVYIEDVIQANVKAMK---AQKSGVYNVGYSQARSYNEIVSILKEHLGDFKVTYIKNPY 284
Query: 365 PGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
+ L+L++T Y L+ ++
Sbjct: 285 AFFQKHTQAHIEPTILDLDYTPLYD-LESGIKDYLPH 320
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 7e-62
Identities = 62/337 (18%), Positives = 121/337 (35%), Gaps = 42/337 (12%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIV-DNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
+LVTG +G IG+ L + + ++ ++ + + G ++FI D+
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRD-------------TGGIKFITLDV 48
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH-NITSNTLVVLESMARHGVDT 190
+ +++ + + DA+ H A + + DP Y N+ T +LE+ +H V+
Sbjct: 49 SNRDEIDRAVEKYSIDAIFHLAGILSA-KGEKDPALAYKVNMNG-TYNILEAAKQHRVEK 106
Query: 191 LIYSSTCATYG-EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFN 249
++ ST +G E K + T P +G K AE + + + + V LRY
Sbjct: 107 VVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPG 166
Query: 250 VIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309
+I + D A I + + +
Sbjct: 167 IIS----------------YKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYM 210
Query: 310 NDLVDAHVKALERAQPKKV--GIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 367
D + A V E + K V YNV T + E K+ ++ Y+
Sbjct: 211 PDALKALVDLYEADRDKLVLRNGYNV-TAYTFTPSELYSKIKERIP-EFEIEYKEDFRDK 268
Query: 368 YAEVYS---DPTKIRLELNWTAKYTNLQESLEIAWRW 401
A + D ++ E ++ +Y +L +++
Sbjct: 269 IAATWPESLDSSEASNEWGFSIEY-DLDRTIDDMIDH 304
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 6e-52
Identities = 54/337 (16%), Positives = 101/337 (29%), Gaps = 39/337 (11%)
Query: 73 VLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
+L+ G G IG+ +L K I ++ + N V F +
Sbjct: 5 ILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVN----------SGPFEVVNA 54
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH-NITSNTLVVLESMARHGVDT 190
D + + + AA+ + +P + N+ S VL +
Sbjct: 55 LDFNQIEHLVEVHKITDIYLMAALLSA-TAEKNPAFAWDLNMNS-LFHVLNLAKAKKIKK 112
Query: 191 LIYSSTCATYGEPEKMPITEE-TPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFN 249
+ + S+ A +G T + T P YG +K+ E + + V +RY
Sbjct: 113 IFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRYPG 172
Query: 250 VIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309
+I G D A I + +
Sbjct: 173 LIS----------WS------TPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMYM 216
Query: 310 NDLVDAHVKALERAQPKKV--GIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 367
+D +DA + ++ K YN+ + E KK + YEP
Sbjct: 217 DDAIDATINIMKAPVEKIKIHSSYNLAAMS-FTPTEIANEIKKHIP-EFTITYEPDFRQK 274
Query: 368 YAEV---YSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
A+ D ++ R + +W + +L+ +
Sbjct: 275 IADSWPASIDDSQAREDWDWKHTF-DLESMTKDMIEH 310
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 5e-49
Identities = 48/241 (19%), Positives = 83/241 (34%), Gaps = 34/241 (14%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+LVTG AG +GS L ++ V + D + G + + DL
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGA------------AEAHEEIVACDLA 52
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
DA+AV+ + D ++H V V D L+ NI + E+ G ++
Sbjct: 53 DAQAVHDLVKD--CDGIIHLGGV-SVERPWNDILQ--ANIIG-AYNLYEAARNLGKPRIV 106
Query: 193 YSSTCATYGE-PEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVI 251
++S+ T G P I E P+ P + YG +K ED+ + D+ + +R +
Sbjct: 107 FASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIGSCF 166
Query: 252 GSDPEGRLGEAPRPELR-EHGRISGACFDAARGIIAGLKVKGTDYST--ADGTCVRDYID 308
+ R +S D R + + + D
Sbjct: 167 P----------KPKDARMMATWLSV--DDFMRLMKRAFVAPKLGCTVVYGASANTESWWD 214
Query: 309 V 309
Sbjct: 215 N 215
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 3e-45
Identities = 68/347 (19%), Positives = 127/347 (36%), Gaps = 51/347 (14%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+ +TG G+I SH A RL + + V D ++ E +F DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM------TEDMFCD---EFHLVDLR 82
Query: 133 DAKAVNKFFSENAFDAVMHFAAVA----YVGESTLDPLKYYHNITSNTLVVLESMARHGV 188
+ K D V + AA ++ + +N T + ++E+ +G+
Sbjct: 83 VMENCLKVTEG--VDHVFNLAADMGGMGFIQS---NHSVIMYNNTMISFNMIEAARINGI 137
Query: 189 DTLIYSSTCATYGEPEKMPITEET-------PQAPINPYGKAKKMAEDIILDFSKNSDMA 241
Y+S+ Y E +++ T + P P + +G K E++ ++K+ +
Sbjct: 138 KRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIE 197
Query: 242 VMILRYFNVIGSDPEGRLGEAPRPELREHGR---ISGACFDAARGIIAGLKVKGTDYSTA 298
I R+ N+ G P G + GR + C A ++ G
Sbjct: 198 CRIGRFHNIYG--PFGTW---------KGGREKAPAAFCRKAQTS-TDRFEMWG------ 239
Query: 299 DGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKV 358
DG R + +++ V+ ++ + N+G+ + S+ E E + +
Sbjct: 240 DGLQTRSFTFIDECVEGVLRLTKSDFR---EPVNIGSDEMVSMNEMAEMVLSFEEKKLPI 296
Query: 359 IYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
+ P P SD I+ +L W L+E L I + W K
Sbjct: 297 HHIP-GPEGVRGRNSDNNLIKEKLGWAPNMR-LKEGLRITYFWIKEQ 341
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 1e-42
Identities = 77/363 (21%), Positives = 149/363 (41%), Gaps = 55/363 (15%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR-GNIGAVKVLQELFPEPGRLQFIYADL 131
+L+TGG G++GS+ A L + + DNLSR G + L L G +F++ D+
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSL----GNFEFVHGDI 59
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH-NITSNTLVVLESMARHGVDT 190
+ V + ++ D+ H A + S +P + N+ TL +LE++ ++ +
Sbjct: 60 RNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGG-TLNLLEAVRQYNSNC 118
Query: 191 -LIYSSTCATYGEPEKMPI----------------TEETPQAPINPYGKAKKMAEDIILD 233
+IYSST YG+ E+ E T +PYG +K A+ +LD
Sbjct: 119 NIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLD 178
Query: 234 FSKNSDMAVMILRYFNVIGSDPEGRLGEAPR--PELREHGRISGACFDAARGIIAGLK-- 289
+++ + ++ R+ ++ G R + G + C A K
Sbjct: 179 YARIFGLNTVVFRHSSMYG----------GRQFATYDQ-GWVGWFCQKAVEIKNGINKPF 227
Query: 290 -VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVK--EFVE 346
+ G +G VRD + D++ + AL + +N+G S+ E +
Sbjct: 228 TISG------NGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFK 281
Query: 347 ACKKATSANIKVIYEPRRPGD---YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQK 403
+ + +++ P R D + +D KI ++W+ K + ++ ++ + W
Sbjct: 282 LLEDYCNIDMRFTNLPVRESDQRVFV---ADIKKITNAIDWSPKVS-AKDGVQKMYDWTS 337
Query: 404 SHR 406
S
Sbjct: 338 SIL 340
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 2e-42
Identities = 47/253 (18%), Positives = 81/253 (32%), Gaps = 41/253 (16%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+LVTG AG +G RL + + + D L L P + + DL
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAEILRLAD------------LSPLDPAGPNEECVQCDLA 53
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH--NITSNTLVVLESMARHGVDT 190
DA AVN + D ++H S P + NI + E+ HG
Sbjct: 54 DANAVNAMVAG--CDGIVHLGG-----ISVEKPFEQILQGNIIG-LYNLYEAARAHGQPR 105
Query: 191 LIYSSTCATYGE-PEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFN 249
++++S+ T G P+ + + P P YG +K E++ + ++R +
Sbjct: 106 IVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFDKFGQETALVRIGS 165
Query: 250 VIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST--ADGTCVRDYI 307
P + D I A + +
Sbjct: 166 CTP-----------EPNNYRMLSTWFSHDDFVSLIEAVFRAPVLGCPVVWGASANDAGWW 214
Query: 308 DVNDLVDAHVKAL 320
D ++H+ L
Sbjct: 215 D-----NSHLGFL 222
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-36
Identities = 71/355 (20%), Positives = 135/355 (38%), Gaps = 52/355 (14%)
Query: 73 VLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
VL+ G G+IG+H RLL++ Y V +D S + P F+ D+
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA-------ISRFLNHP-HFHFVEGDI 54
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
++ + D V+ A+A E T +PL+ + L ++ ++ +
Sbjct: 55 SIHSEWIEYHVKKC-DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RI 112
Query: 192 IYSSTCATYGEPEKMPITEETPQAPINP-------YGKAKKMAEDIILDFSKNSDMAVMI 244
I+ ST YG E+ + P Y +K++ + +I + + + +
Sbjct: 113 IFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTL 172
Query: 245 LRYFNVIGSDPEGRLGEAPRPELREHGR-ISGACFDAARGIIAGLKVKGTDYSTADGTCV 303
R FN +G P RL + R I+ + G + +K+ G
Sbjct: 173 FRPFNWMG--P--RLDNLNAARIGS-SRAITQLILNLVEG--SPIKLID------GGKQK 219
Query: 304 RDYIDVNDLVDAHVKALERAQPKKVG-IYNVGTGKG-RSVKEFVEACKKATSANIKVIYE 361
R + D+ D ++A + +E A + G I N+G + S++E E + + +
Sbjct: 220 RCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHF 279
Query: 362 PRRPGD--------YAEVYSDP-------TKIRLELNWTAKYTNLQESLE--IAW 399
P G Y + Y D L+W K ++QE+++ + +
Sbjct: 280 PPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPK-IDMQETIDETLDF 333
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 6e-36
Identities = 68/355 (19%), Positives = 125/355 (35%), Gaps = 51/355 (14%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
VL+ G G+IG H + R+L+ + ++ + +L R+ F D+
Sbjct: 26 KVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRL------GDLVKHE-RMHFFEGDI 78
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
K ++ + D ++ A+A PL+ + L ++ S ++G L
Sbjct: 79 TINKEWVEYHVKK-CDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGK-HL 136
Query: 192 IYSSTCATYG---EPEKMPITEETPQAPINP----YGKAKKMAEDIILDFSKNSDMAVMI 244
++ ST YG + + P PIN Y +K++ + +I + + +
Sbjct: 137 VFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGME-GLNFTL 195
Query: 245 LRYFNVIGSDPEGRLGEAPRPELREHGR-ISGACFDAARGIIAGLKVKGTDYSTADGTCV 303
R FN IG P L P+ R ++ RG + + G+
Sbjct: 196 FRPFNWIG--P--GLDSIYTPKEGS-SRVVTQFLGHIVRG--ENISLVD------GGSQK 242
Query: 304 RDYIDVNDLVDAHVKALERAQPKKVG-IYNVGTGKG-RSVKEFVEACKKATSANIKVIYE 361
R + V+D + A +K +E + G IYN+G SV+E + + +
Sbjct: 243 RAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADS 302
Query: 362 PRRPGD--------YAEVYSDP-------TKIRLELNWTAKYTNLQESLE--IAW 399
+R Y Y D EL W + ++L
Sbjct: 303 AKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQ-FTFDDALRQIFEA 356
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 131 bits (330), Expect = 9e-35
Identities = 43/341 (12%), Positives = 96/341 (28%), Gaps = 68/341 (19%)
Query: 73 VLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
+++TG G++G + L + + V +
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTDHHIFEVHRQT--------------------------- 35
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
+ + + D ++H A V ++ S VL+ + R+
Sbjct: 36 -KEEELESALLK--ADFIVHLAGVNRP----EHDKEFSLGNVSYLDHVLDILTRNTKKPA 88
Query: 192 IYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVI 251
I S+ NPYG++K E ++ ++++ V I R+ N+
Sbjct: 89 ILLSS--------------SIQATQDNPYGESKLQGEQLLREYAEEYGNTVYIYRWPNLF 134
Query: 252 GSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVND 311
G + + + D V+D
Sbjct: 135 G--KWCKPNYNS-----------------VIATFCYKIARNEEIQVNDRNVELTLNYVDD 175
Query: 312 LVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEV 371
+V +A+E + G+ V ++ E V+ K + + ++
Sbjct: 176 IVAEIKRAIEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDL 235
Query: 372 YSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYASI 412
YS +++ + + K+ G S+
Sbjct: 236 YSTYLSYLPSTDFSYPLLMNVDDRGSFTEFIKTPDRGQVSV 276
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 1e-34
Identities = 55/369 (14%), Positives = 108/369 (29%), Gaps = 77/369 (20%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V G G +G HAA + + + + + R ++ L L + A++
Sbjct: 16 YAVLGATGLLGHHAARAIRAAGHDLVL---IHR-PSSQIQRLAYL-----EPECRVAEML 66
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH-NITSNTLVVLESMARHGVDTL 191
D + + D V+ A + + T + + V +
Sbjct: 67 DHAGLERALRG--LDGVIFSAGY--YPSRPRRWQEEVASALGQ-TNPFYAACLQARVPRI 121
Query: 192 IYSSTCATYGE-PEKMPITEETPQAP----INPYGKAKKMAEDIILDFSKNSDMAVMILR 246
+Y + P+ +P E + Y K ++ + ++N + V+I
Sbjct: 122 LYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQARN-GLPVVIGI 180
Query: 247 YFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306
V+G GR+ G + R+
Sbjct: 181 PGMVLG----------ELDIGPTTGRV---ITAIGNGEMTHY-----------VAGQRNV 216
Query: 307 IDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKAT------SANIKVIY 360
ID + + ALER + + Y + G + + + ++ +
Sbjct: 217 IDAAEAGRGLLMALERGRIGER--YLLT-GHNLEMADLTRRIAELLGQPAPQPMSMAMAR 273
Query: 361 ---------------EPRRPGDYAEVYS-----DPTKIRLELNWTAKYTNLQESLEIAWR 400
P EV + D K R EL + + T L ++L A
Sbjct: 274 ALATLGRLRYRVSGQLPLLDETAIEVMAGGQFLDGRKAREELGFFS-TTALDDTLLRAID 332
Query: 401 WQKSHRGGY 409
W + + GY
Sbjct: 333 WFRDN--GY 339
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-34
Identities = 87/344 (25%), Positives = 140/344 (40%), Gaps = 59/344 (17%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
+L+TGGAG++GSH +L+ D + VT+VDN G + ++ + I D+
Sbjct: 29 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRK---RNVEHWIGHE-NFELINHDV 84
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
V + E D + H A+ A +P+K T TL +L R G L
Sbjct: 85 -----VEPLYIE--VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RL 136
Query: 192 IYSSTCATYGEPEKMPITEE-----TPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILR 246
+ +ST YG+PE P +E+ P P Y + K++AE + + K + V + R
Sbjct: 137 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 196
Query: 247 YFNVIGSDPEGRLGEAPRPELREHGR-ISGACFDAARGIIAGLKVKGTDYSTADGTCVRD 305
FN G PR + + GR +S A +G L V G G+ R
Sbjct: 197 IFNTFG----------PRMHMND-GRVVSNFILQALQGE--PLTVYG------SGSQTRA 237
Query: 306 YIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEP--- 362
+ V+DLV+ V + N+G + ++ EF + K + ++ +
Sbjct: 238 FQYVSDLVNGLVALMNSNVS---SPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQ 294
Query: 363 -----RRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLE--IAW 399
R+P D K +L L W L+E L I +
Sbjct: 295 DDPQKRKP--------DIKKAKLMLGWEPV-VPLEEGLNKAIHY 329
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-30
Identities = 73/351 (20%), Positives = 131/351 (37%), Gaps = 69/351 (19%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
L+TG AG++G + A L + + V SR N + ++ I D+
Sbjct: 15 ALITGVAGFVGKYLANHLTEQNVEVF---GTSRNNEAKLP----------NVEMISLDIM 61
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN-TLVVLESMARHGVDTL 191
D++ V K S+ D + H AA + V +S L+ + TL VL+++ +D
Sbjct: 62 DSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKK-GTFSTNVFGTLHVLDAVRDSNLDCR 120
Query: 192 IY-SSTCATYG--EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYF 248
I + YG PE+ P++EE P++PYG +K + + K M ++ R F
Sbjct: 121 ILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTF 180
Query: 249 NVIGSDPEGRLGEAPRPELREHGRISGACF------DAARGIIAGLKVKGTDYSTADGTC 302
N P + F I +
Sbjct: 181 N----------HIGPG---Q------SLGFVTQDFAKQIVDIEMEKQEP----------I 211
Query: 303 V--------RDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSA 354
+ RD+ DV D+V A+ + + V YNV +G G +++ ++ +
Sbjct: 212 IKVGNLEAVRDFTDVRDIVQAYWLLSQYGKTGDV--YNVCSGIGTRIQDVLDLLLAMANV 269
Query: 355 NIKVIYEPR--RPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEI---AWR 400
I P RP + + +++ W + L++SL ++R
Sbjct: 270 KIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRIP-LEKSLFEILQSYR 319
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 97.6 bits (243), Expect = 1e-22
Identities = 65/349 (18%), Positives = 113/349 (32%), Gaps = 34/349 (9%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V VTG G+ G +L L V V L E +Q D+
Sbjct: 12 VFVTGHTGFKGGWLSLWLQTMGATVKGYSL----TAPTVPSLFETARVADGMQSEIGDIR 67
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMAR-HGVDTL 191
D + + E + V H AA V S +P++ Y T+ +LE++ GV +
Sbjct: 68 DQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAV 127
Query: 192 IYSSTCATYGEPE-KMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNV 250
+ ++ Y E E +PY +K AE ++ +NS
Sbjct: 128 VNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAE-LVTSSYRNSFFNPANYGQHGT 186
Query: 251 IGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL---KVKGTDYSTADGTCVRDYI 307
+ G + G A I+ + + + +R +
Sbjct: 187 AVATVRA-------------GNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQ 233
Query: 308 DVNDLVDAHV---KALERAQPKKVGIYNVGTGKG--RSVKEFVEACKKATSANIKVIYEP 362
V + + ++ + L + +N G VK VE K ++
Sbjct: 234 HVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKY--WGEGASWQL 291
Query: 363 RRPGDYAEV---YSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGG 408
E D +K +++L W ++ NL +LE W K+ G
Sbjct: 292 DGNAHPHEAHYLKLDCSKAKMQLGWHPRW-NLNTTLEYIVGWHKNWLSG 339
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 3e-21
Identities = 41/270 (15%), Positives = 81/270 (30%), Gaps = 54/270 (20%)
Query: 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNIGAVKVLQELFPEPGRLQF 126
E V +++ G +G++GS L + VT +V + + + E L+
Sbjct: 2 EKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEK-----------IKIENEHLKV 50
Query: 127 IYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH 186
AD+ V + DAV+ + D L +++ + +
Sbjct: 51 KKADVSSLDEVCEVC--KGADAVISAFNPGWNNPDIYDET------IKVYLTIIDGVKKA 102
Query: 187 GVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILR 246
GV+ + + + + ++ + P N K + E + K ++ +
Sbjct: 103 GVNRFLMVGGAGSLFIAPGLRLM-DSGEVPENILPGVKALGEFYLNFLMKEKEIDWVFFS 161
Query: 247 YFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306
+ G+ G G D D +
Sbjct: 162 PAADMRP-----------------------------GVRTGRYRLGKDDMIVDIVG-NSH 191
Query: 307 IDVNDLVDAHVKALERAQPKKVG-IYNVGT 335
I V D A + LE PK + +G
Sbjct: 192 ISVEDYAAAMIDELE--HPKHHQERFTIGY 219
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 3e-20
Identities = 66/356 (18%), Positives = 115/356 (32%), Gaps = 84/356 (23%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
V VTG +G+IGS +RLL+ Y V V + + VK L +L L ADL
Sbjct: 8 VCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVK--KVKHLLDLPKAETHLTLWKADL 65
Query: 132 GDAKAVNKFFSENAFDA-------VMHFAAVAYVGESTLDPLKYYHNITSN--------- 175
D E +FD V H A P
Sbjct: 66 AD---------EGSFDEAIKGCTGVFHVAT----------P--MDFESKDPENEVIKPTI 104
Query: 176 --TLVVLESMARHG-VDTLIYSSTCAT--YGEPEKMPITE---------ETPQAPINPYG 221
L +++S A V L+++S+ T E + E + Y
Sbjct: 105 EGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYF 164
Query: 222 KAKKMAEDIILDFSKNS--DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFD 279
+K +AE ++K + D +I V+G P + + +
Sbjct: 165 VSKTLAEQAAWKYAKENNIDFITIIPTL--VVG------------PFI--MSSMPPSLIT 208
Query: 280 AARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGR 339
A I ++ ++DL +AH+ E PK G Y +
Sbjct: 209 ALSPITGNEAHYSIIRQGQ-------FVHLDDLCNAHIYLFE--NPKAEGRYIC-SSHDC 258
Query: 340 SVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESL 395
+ + + ++ + E + + + +K +L + KY+ L++
Sbjct: 259 IILDLAKMLREKYP-EYNIPTEFKGVDENLKSVCFSSKKLTDLGFEFKYS-LEDMF 312
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 3e-20
Identities = 74/398 (18%), Positives = 139/398 (34%), Gaps = 51/398 (12%)
Query: 33 FAGKFILAAALTALCIFLLKQSPTFSSPSPFSQHEEGVTHVLVTGGAGYIGSHAALRLLK 92
+ + L Q +S + T VL+ G G+IG+H RLL+
Sbjct: 281 AGDGITMQGS-QLAQTLGLVQGSRLNSQPACTARRR--TRVLILGVNGFIGNHLTERLLR 337
Query: 93 D-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMH 151
+ Y V +D S + P F+ D+ ++ + D V+
Sbjct: 338 EDHYEVYGLDIGS-------DAISRFLNHP-HFHFVEGDISIHSEWIEYHVKKC-DVVLP 388
Query: 152 FAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEE 211
A+A E T +PL+ + L ++ ++ +I+ ST YG E+
Sbjct: 389 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDED 447
Query: 212 TPQAPINP-------YGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPR 264
+ P Y +K++ + +I + + + + R FN +G RL
Sbjct: 448 HSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGP----RLDNLNA 503
Query: 265 PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ 324
+ R ++ G +K D G R + D+ D ++A + +E A
Sbjct: 504 ARIG-SSRAI-TQL--ILNLVEGSPIKLID----GGKQKRCFTDIRDGIEALYRIIENAG 555
Query: 325 PKKVG-IYNVGTGKGR-SVKEFVEACKKATSANIKVIYEPRRPGD--------YAEVYSD 374
+ G I N+G + S++E E + + + P G Y + Y D
Sbjct: 556 NRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQD 615
Query: 375 P-------TKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
L+W K ++QE+++ +
Sbjct: 616 VEHRKPSIRNAHRCLDWEPK-IDMQETIDETLDFFLRT 652
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 3e-20
Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 15/164 (9%)
Query: 73 VLVTGGAGYIGSHAALRLLK--DSYRVTIVDNLS-RGNIGAVKVLQELFPEPGRLQFIYA 129
+LVTGGAG+IGS+ +L+ ++Y++ D L+ GN+ ++ + P F+
Sbjct: 27 ILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNN---VKSIQDHP-NYYFVKG 82
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN---TLVVLESMARH 186
++ + + + E +++FAA ++V S +P+ + +N T+ +LE + ++
Sbjct: 83 EIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPF---YDTNVIGTVTLLELVKKY 139
Query: 187 GVDTLIYSSTCATYGE-PEKMPITEETPQAPINPYGKAKKMAED 229
L+ ST YG + TEETP AP +PY + K + D
Sbjct: 140 PHIKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPY-SSSKASAD 182
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 41/111 (36%)
Query: 299 DGTCVRDYIDVNDLVDAHVKALERAQPK-KVG-IYNVGTGKGRSVKEFVEACKKATSANI 356
DG VRD++ V D H A++ K +VG +YN+G G + K N+
Sbjct: 233 DGLNVRDWLHVTD----HCSAIDVVLHKGRVGEVYNIG---GNNEK-----------TNV 274
Query: 357 KVIY-------EPR--------RPG-D--YAEVYSDPTKIRLELNWTAKYT 389
+V+ + + R G D YA + K++ E +W KYT
Sbjct: 275 EVVEQIITLLGKTKKDIEYVTDRLGHDRRYA---INAEKMKNEFDWEPKYT 322
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 6e-20
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 20/168 (11%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDS------YRVTIVDNLS-RGNIGAVKVLQELFPEPGRL 124
+LVTGGAG+IGSH +LL + V ++D+L+ GN L + +P RL
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRAN---LAPVDADP-RL 57
Query: 125 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN---TLVVLE 181
+F++ D+ DA + + DA++HFAA ++V S + +N T +L+
Sbjct: 58 RFVHGDIRDAGLLARELRG--VDAIVHFAAESHVDRSIAGASVF---TETNVQGTQTLLQ 112
Query: 182 SMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAED 229
GV +++ ST YG + TE +P P +PY A K D
Sbjct: 113 CAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYA-ASKAGSD 159
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 6e-06
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 299 DGTCVRDYIDVNDLVDAHVKALERAQPK-KVG-IYNVGTGKGRSVKEFVEACKKATSANI 356
DG VR+++ +D H + + + G IY++G G + +E + A+
Sbjct: 210 DGANVREWVHTDD----HCRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADW 265
Query: 357 KVI-YEPRRPG-D--YAEVYSDPTKIRLELNWTAKYT 389
+ R G D Y+ D KI EL + + +
Sbjct: 266 SSVRKVADRKGHDLRYS---LDGGKIERELGYRPQVS 299
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 1e-19
Identities = 57/293 (19%), Positives = 97/293 (33%), Gaps = 75/293 (25%)
Query: 64 SQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNIGAVKVLQELFPEPG 122
+QH G V GG G++ S LL+ Y V T V + V L EL E G
Sbjct: 3 TQHPIGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQK--KVSHLLEL-QELG 59
Query: 123 RLQFIYADLGDAKAVNKFFSENAFDA-------VMHFAAVAYVGESTLDPLKYYHNITSN 175
L+ ADL D E +F+A V H A P +
Sbjct: 60 DLKIFRADLTD---------ELSFEAPIAGCDFVFHVAT----------P--VHFASEDP 98
Query: 176 -----------TLVVLESMAR-HGVDTLIYSSTCAT----YGEPEKMPITEE-------- 211
+ V+++ R V +I +S+ A + + + E+
Sbjct: 99 ENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFL 158
Query: 212 -TPQAPINPYGKAKKMAEDIILDFSKNS--DMAVMILRYFNVIGSDPEGRLGEAPRPELR 268
+ + P Y +K +AE F++ + D+ +I P G + ++
Sbjct: 159 TSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVI----------PTLMAGSSLTSDVP 208
Query: 269 EHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALE 321
++ + +I G+K + V D+ AH+ E
Sbjct: 209 SSIGLAMSLITGNEFLINGMKGMQMLSGSV------SIAHVEDVCRAHIFVAE 255
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 3e-19
Identities = 66/358 (18%), Positives = 120/358 (33%), Gaps = 87/358 (24%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRV--TIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD 130
V VTGG G++GS LL++ Y V TI + R V L L +L F AD
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRD--VSFLTNLPGASEKLHFFNAD 61
Query: 131 LGDAKAVNKFFSENAFDA-------VMHFAAVAYVGESTLDPLKYYHNITSN-------- 175
L + ++F A + H A+ P ++
Sbjct: 62 LSN---------PDSFAAAIEGCVGIFHTAS----------P--IDFAVSEPEEIVTKRT 100
Query: 176 ---TLVVLESMARHG-VDTLIYSSTCAT--YGEPEKMPITEE---------TPQAPINPY 220
L +L++ V IY+S+ + + +K + E + + Y
Sbjct: 101 VDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNY 160
Query: 221 GKAKKMAEDIILDFSKNS--DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACF 278
+K +AE +L+F + + D+ +I +G P+L
Sbjct: 161 AVSKTLAEKAVLEFGEQNGIDVVTLI----------LPFIVGRFVCPKL-------PDSI 203
Query: 279 DAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKG 338
+ A ++ G K + V+D+ AH+ LE G YN +
Sbjct: 204 EKALVLVLG---KKEQIGVTRFH----MVHVDDVARAHIYLLE--NSVPGGRYNC-SPFI 253
Query: 339 RSVKEFVEACKKAT-SANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESL 395
++E + I + E + + K+ + + KYT +++
Sbjct: 254 VPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLV-DAGFDFKYT-IEDMF 309
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 23/164 (14%)
Query: 72 HVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLS-RGNIGAVKVLQELFPEPGRLQFIY 128
+++VTGGAG+IGS+ + + VT++D L+ GN ++ + R++ +
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI-----LGDRVELVV 60
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH-NITSNTLVVLESMARHG 187
D+ DA+ V+K ++ DA++H+AA ++ S DP + H N T +LE+ ++
Sbjct: 61 GDIADAELVDKLAAK--ADAIVHYAAESHNDNSLNDPSPFIHTNFIG-TYTLLEAARKYD 117
Query: 188 V-------D----TLIYSSTCATYGEPEKMPITEETPQAPINPY 220
+ D L +GE T ET P +PY
Sbjct: 118 IRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPY 161
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 5e-07
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 299 DGTCVRDYIDVNDLVDAHVKALERAQPK-KVG-IYNVGTGKGRSVKEFVEACKKATSANI 356
+G VRD+I ND H + K ++G Y +G ++ KE +E +
Sbjct: 220 EGKNVRDWIHTND----HSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPK 275
Query: 357 KVI-YEPRRPG-D--YAEVYSDPTKIRLELNWTAKYTNLQESLE--IAW 399
+ R G D YA D +K+R EL WT ++T+ E LE I W
Sbjct: 276 DAYDHVTDRAGHDLRYA---IDASKLRDELGWTPQFTDFSEGLEETIQW 321
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 85.2 bits (212), Expect = 1e-18
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 17/165 (10%)
Query: 72 HVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLS-RGNIGAVKVLQELFPEPGRLQFIY 128
+LVTGG G+IGS+ +L+ + V +D L N +K L++ +P R F+
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLED---DP-RYTFVK 60
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN---TLVVLESMAR 185
D+ D + V + + D V+H AA ++V S P + + SN T +LES+ R
Sbjct: 61 GDVADYELVKELVRK--VDGVVHLAAESHVDRSISSPEIF---LHSNVIGTYTLLESIRR 115
Query: 186 HGVDTLIYS-STCATYGEPEKMPITEETPQAPINPYGKAKKMAED 229
+ ST YG+ K TE P +PY A K A D
Sbjct: 116 ENPEVRFVHVSTDEVYGDILKGSFTENDRLMPSSPY-SATKAASD 159
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 4e-05
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 299 DGTCVRDYIDVNDLVDAHVKALERAQPK-KVG-IYNVGTGKGRSVKEFVEACKKATSANI 356
G VRD++ V D HV+A+E K + IYN+ G+ ++ E V+ +
Sbjct: 210 TGKNVRDWLYVED----HVRAIELVLLKGESREIYNISAGEEKTNLEVVKIILRLMGKGE 265
Query: 357 KVI-YEPRRPG-D--YAEVYSDPTKIRLELNWTAKYT 389
++I RPG D Y+ D KI +L W KYT
Sbjct: 266 ELIELVEDRPGHDLRYS---LDSWKITRDLKWRPKYT 299
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 54/183 (29%), Positives = 80/183 (43%), Gaps = 34/183 (18%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLS-RGNIGAVKVLQELFPEPGRLQFIYA 129
+L+TGGAG+IGS ++K++ V +D L+ GN+ + L ++ R F +A
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLES---LSDISESN-RYNFEHA 57
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN---TLVVLESMARH 186
D+ D+ + + F + DAVMH AA ++V S P + I +N T +LE AR
Sbjct: 58 DICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAF---IETNIVGTYALLEV-ARK 113
Query: 187 GVDTLIYS----------STCATYG----------EPEKMPITEETPQAPINPYGKAKKM 226
L ST YG TE T AP +PY A K
Sbjct: 114 YWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPY-SASKA 172
Query: 227 AED 229
+ D
Sbjct: 173 SSD 175
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 9e-04
Identities = 35/107 (32%), Positives = 45/107 (42%), Gaps = 26/107 (24%)
Query: 299 DGTCVRDYIDVNDLVDAHVKALERAQPK-KVG-IYNVGTGKGRSVK---EFVEA-CK--- 349
G +RD++ V D H +AL + K G YN+G G + K + V C
Sbjct: 226 KGDQIRDWLYVED----HARALHMVVTEGKAGETYNIG---GHNEKKNLDVVFTICDLLD 278
Query: 350 ----KATSANIKVIYEPRRPG-D--YAEVYSDPTKIRLELNWTAKYT 389
KATS ++ Y RPG D YA D KI EL W T
Sbjct: 279 EIVPKATSYREQITYVADRPGHDRRYA---IDAGKISRELGWKPLET 322
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 80.5 bits (198), Expect = 8e-17
Identities = 52/289 (17%), Positives = 81/289 (28%), Gaps = 39/289 (13%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTI--VDNLSRGNIGAVKVLQELFPEPGRLQFIYAD 130
L+ G G IG+ A L V ++R A E + ++ D
Sbjct: 4 ALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-------HEDNPINYVQCD 56
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNI--TSNTLVVLESMARH-- 186
+ D S V H V + ST N N L + +
Sbjct: 57 ISDPDDSQAKLS--PLTDVTHVFYVTWANRSTEQEN-CEANSKMFRNVLDAVIPNCPNLK 113
Query: 187 ----GVDTLIYSSTCATYG--EPEKMPITEETPQAPINPYGKAKKMAEDIIL-DFSKNSD 239
Y +YG E P TE+ P+ Y EDI+L + K
Sbjct: 114 HISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRL---KYMNFYYDLEDIMLEEVEKKEG 170
Query: 240 MAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTAD 299
+ + R N+ G P + + A G + +
Sbjct: 171 LTWSVHRPGNIFGFSPYSMMNLVGTLCVY-------AAICKHEGKVLRFTGCKAAW---- 219
Query: 300 GTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEAC 348
D D + + + H+ A K +NV G K F +
Sbjct: 220 -DGYSDCSDADLIAEHHIWAAVDPYAKN-EAFNVSNGDVFKWKHFWKVL 266
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 1e-16
Identities = 42/334 (12%), Positives = 96/334 (28%), Gaps = 60/334 (17%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
+L+ G G +G A RL + VT L R + P +Q + AD+
Sbjct: 5 KILIAG-CGDLGLELARRLTAQGHEVTG---LRRS--------AQPMPA--GVQTLIADV 50
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
+ + +++ A + + Y N L ++ + +
Sbjct: 51 TRPDTLASI-VHLRPEILVYCVAASEYSDE--HYRLSYVEGLRN---TLSALEGAPLQHV 104
Query: 192 IYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVI 251
+ S+ YG+ + + E+TP + GK AE ++ + + ILR+ +
Sbjct: 105 FFVSSTGVYGQEVEEWLDEDTPPIAKDFSGKRMLEAEALL------AAYSSTILRFSGIY 158
Query: 252 GSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVND 311
G R + + + + I +D
Sbjct: 159 GPG---------------------------RLRMIRQAQTPEQWPARNA--WTNRIHRDD 189
Query: 312 LVDAHVKALER-AQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAE 370
+++ + +Y V + V + + P G+ +
Sbjct: 190 GAAFIAYLIQQRSHAVPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATPPVQGN-KK 248
Query: 371 VYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKS 404
+ + ++ + Y + +
Sbjct: 249 LSNA--RLL-ASGYQLIYPDYVSGYGALLAAMRE 279
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 5e-15
Identities = 59/371 (15%), Positives = 111/371 (29%), Gaps = 95/371 (25%)
Query: 71 THVLVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNIGAVKVLQELFPEPGRLQFIY- 128
+ VLVTG G++ SH +LL+ Y+V + S+ LQ+ + +F
Sbjct: 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKL-----ANLQKRWDAKYPGRFETA 66
Query: 129 --ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH-----NITSN------ 175
D+ + A+D V A V H + ++
Sbjct: 67 VVEDMLK---------QGAYDEV--IKGAAGV----------AHIASVVSFSNKYDEVVT 105
Query: 176 -----TLVVLESMARHG-VDTLIYSSTCAT----YGEPEKMPITEET------------- 212
TL L + A V + +S+ + E + + E++
Sbjct: 106 PAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLP 165
Query: 213 ---PQAPINPYGKAKKMAEDIILDFSKNS----DMAVMILRYFNVIGSDPEGRLGEAPRP 265
PQ + Y +K AE F + + ++ Y IG
Sbjct: 166 ESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNY--TIG------------T 211
Query: 266 ELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP 325
+ G + L G + Y+ D+ H+ L P
Sbjct: 212 IFDPETQSGSTS-----GWMMSL-FNGEVSPALALMPPQYYVSAVDIGLLHLGCLVL--P 263
Query: 326 KKVGIYNVGTGKGRSVKEFVEACKKAT-SANIKVIYEPRRPGDYAEVYSDPTKIRLELNW 384
+ GT + +K S P + D ++ + P+ L+
Sbjct: 264 QIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPAD-FPDQGQDLSKFDTAPSLEILKSLG 322
Query: 385 TAKYTNLQESL 395
+ +++ES+
Sbjct: 323 RPGWRSIEESI 333
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* Length = 321 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 6e-13
Identities = 80/389 (20%), Positives = 140/389 (35%), Gaps = 127/389 (32%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V + G G +GS A R L+ V +V ++ EL +L
Sbjct: 6 VFIAGHRGMVGS-AIRRQLEQRGDVELV----------LRTRDEL------------NLL 42
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVG----ESTLDPLKY-YHN--ITSNTLVVLESMAR 185
D++AV+ FF+ D V + A A VG +T P + Y N I SN ++ + +
Sbjct: 43 DSRAVHDFFASERIDQV--YLAAAKVGGIVANNTY-PADFIYQNMMIESN---IIHAAHQ 96
Query: 186 HGVDTLIY-SSTCATYGEPEKMPITEET----PQAPIN-PYGKAK----KMAEDIILDFS 235
+ V+ L++ S+C Y + K P+ E P N PY AK K+ E
Sbjct: 97 NDVNKLLFLGSSCI-YPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCE------- 148
Query: 236 KNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGR--IS---------GACFDAARG- 283
+N R++GR S F +
Sbjct: 149 -----------SYN------------------RQYGRDYRSVMPTNLYGPHDNFHPSNSH 179
Query: 284 IIAGL-------KVKGTDYSTA--DGTCVRDYIDVNDLVDAHVKALERAQPK-------K 327
+I L + GT +R+++ V+D+ A + +E A
Sbjct: 180 VIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPM 239
Query: 328 VGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRL------- 380
+ NVGTG +++E + K +V+++ +P D T +L
Sbjct: 240 LSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKP--------DGTPRKLLDVTRLH 291
Query: 381 ELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
+L W + +L+ L ++W ++ +
Sbjct: 292 QLGWYHE-ISLEAGLASTYQWFLENQDRF 319
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* Length = 345 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 8e-12
Identities = 88/359 (24%), Positives = 142/359 (39%), Gaps = 86/359 (23%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRV------TIVDNLSRGNIGAVKVLQELFPEPGRLQFI 127
L+TG G G++ A LL+ Y V + R L+EL E ++ I
Sbjct: 7 LITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWR--------LKELGIEN-DVKII 57
Query: 128 YADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITS-NTLVVLESMARH 186
+ DL + + + + D V + AA ++VG S P+ + + L +LE++
Sbjct: 58 HMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPI-LTAEVDAIGVLRILEALRTV 116
Query: 187 GVDTLIY-SSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDM-AVM- 243
DT Y +ST +G+ +++P TE+TP P +PY AK I +++ + +M A
Sbjct: 117 KPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSG 176
Query: 244 ILRYFNVIGSDPEGRLGEAPRPELREHGRISGACF------DAARGIIAGLKVK---GTD 294
IL FN E+P R G F + I GL+ K G
Sbjct: 177 IL--FN----------HESPL---R------GIEFVTRKITYSLARIKYGLQDKLVLGNL 215
Query: 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSA 354
+ D +Y V+A +++ +P Y + TG+ +V+EFVE K
Sbjct: 216 NAKRDWGYAPEY------VEAMWLMMQQPEPDD---YVIATGETHTVREFVEKAAKIAGF 266
Query: 355 NIK-------------------VIYEPR--RPGDYAEVYS---DPTKIRLELNWTAKYT 389
+I+ V RP AEV +P K +L W + T
Sbjct: 267 DIEWVGEGINEKGIDRNTGKVIVEVSEEFFRP---AEVDILVGNPEKAMKKLGWKPRTT 322
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 6e-11
Identities = 22/220 (10%), Positives = 56/220 (25%), Gaps = 28/220 (12%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD 130
+ V G G GS + + V +V + + +
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKA------------ADRLGATVATLV 49
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ DAV+ +V + L + ++ + +
Sbjct: 50 KEPLVLTEADLD--SVDAVVDALSVPWGSGRGYLHLDFATHL-------VSLLRNSDTLA 100
Query: 191 LIYSSTCATYGEPEKMPITEETPQAPI-NPYGKAKKMAEDIILDFSKNSDMAVMILRYFN 249
+ + + P+ + P++ P+ N+++ + +
Sbjct: 101 VFILGSASLAMPGADHPMILDFPESAASQPWYDGALYQYYEYQFLQMNANVNWIGISPSE 160
Query: 250 VIGSDPEG--RLGEAPRPELRE-HGRISGACFDAARGIIA 286
S P G+ + I+ + A I+
Sbjct: 161 AFPSGPATSYVAGKDTLLVGEDGQSHITTG--NMALAILD 198
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* Length = 381 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 7e-11
Identities = 87/351 (24%), Positives = 139/351 (39%), Gaps = 78/351 (22%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRV------TIVDNLSRGNIGAVKVLQELFPEP-----G 122
L+TG G GS+ LL Y V + N R + ++ +P
Sbjct: 32 LITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQR--------INHIYIDPHNVNKA 83
Query: 123 RLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITS-NTLVVLE 181
++ YADL DA ++ ++ D V + AA ++V S P Y ++ + L +LE
Sbjct: 84 LMKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPD-YTADVVATGALRLLE 142
Query: 182 SMARHGVDTL----IY-SSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSK 236
++ H +D+ Y + + +G P +E TP P +PY +K A +++ +
Sbjct: 143 AVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYRE 201
Query: 237 NSDM-AVM-ILRYFNVIGSDPEGRLGEAPRPELREHGRISGACF------DAARGIIAGL 288
+ A IL FN E+PR R G F A I GL
Sbjct: 202 AYGLFACNGIL--FN----------HESPR-------R--GENFVTRKITRALGRIKVGL 240
Query: 289 KVK---GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFV 345
+ K G + RD+ D V+A L++ +P Y V T +G +V+EF+
Sbjct: 241 QTKLFLGNLQA------SRDWGFAGDYVEAMWLMLQQEKPDD---YVVATEEGHTVEEFL 291
Query: 346 EACKKATSANIKVIYE--PR--RPGDYAEVYS---DPTKIRLELNWTAKYT 389
+ N K E R RP AEV + D +K + L W +
Sbjct: 292 DVSFGYLGLNWKDYVEIDQRYFRP---AEVDNLQGDASKAKEVLGWKPQVG 339
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 375 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 8e-11
Identities = 91/366 (24%), Positives = 144/366 (39%), Gaps = 92/366 (25%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRV------TIVDNLSRGNIGAVKVLQELFPEP-----G 122
L+TG G GS+ A LL+ Y V + N R ++ L+ P G
Sbjct: 28 LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGR--------IEHLYKNPQAHIEG 79
Query: 123 RLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITS-NTLVVLE 181
++ Y DL D+ + K +E + + A ++V S +Y ++ TL +L+
Sbjct: 80 NMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLA-EYTADVDGVGTLRLLD 138
Query: 182 SMARHGV--DTLIY-SSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNS 238
++ G+ Y +ST YG+ +++P E TP P +PYG AK A I+++F +
Sbjct: 139 AVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAY 198
Query: 239 DM-AVM-ILRYFNVIGSDPEGRLGEAPRPELREHGRISGACF------DAARGIIAGLKV 290
++ AV IL FN E+PR R GA F + I G
Sbjct: 199 NLFAVNGIL--FN----------HESPR---R------GANFVTRKISRSVAKIYLGQLE 237
Query: 291 K---GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEA 347
G + RD+ D V+A L+ +P+ + + TG+ SV+EFVE
Sbjct: 238 CFSLGNLDA------KRDWGHAKDYVEAMWLMLQNDEPED---FVIATGEVHSVREFVEK 288
Query: 348 CKKATSANIK-------------------VIYEPR--RPGDYAEVYS---DPTKIRLELN 383
I V + + RP EV D TK + +LN
Sbjct: 289 SFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRP---TEVDFLQGDCTKAKQKLN 345
Query: 384 WTAKYT 389
W +
Sbjct: 346 WKPRVA 351
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 9e-11
Identities = 29/178 (16%), Positives = 57/178 (32%), Gaps = 37/178 (20%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
+ + G G G + ++ Y VT +V + SR L P + D+
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR--------LPSEGPR--PAHVVVGDV 55
Query: 132 GDAKAVNKFFSENAF---DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV 188
A V + DAV+ + L P N ++ +M HGV
Sbjct: 56 LQAADV-----DKTVAGQDAVIV----LLGTRNDLSPTTVMSEGARN---IVAAMKAHGV 103
Query: 189 DTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILR 246
D ++ ++ +P K+P + ++ + S + + +
Sbjct: 104 DKVVACTSAFLLWDPTKVP-------PRLQAVTDDHIRMHKVL----RESGLKYVAVM 150
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 9e-11
Identities = 33/272 (12%), Positives = 68/272 (25%), Gaps = 59/272 (21%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD 130
+ + G G GS + VT IV N + + + + D
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGK-----------ITQTHKDINILQKD 50
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ D + + V+ A + + ++ + +
Sbjct: 51 IFDLTLS----DLSDQNVVVD--AYGISPDEAEKHVTSLDHL-------ISVLNGTVSPR 97
Query: 191 LIYSSTCATYGEPEKMPITEETPQAPINPY-GKAKKMAEDIILDFSKNSDMAVMILRYFN 249
L+ A+ E E+ PY A+ A+ + S ++ + +
Sbjct: 98 LLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEHLKSHQAEFSWTYIS--- 154
Query: 250 VIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309
P R G G D+ +I +
Sbjct: 155 -----PSAMFEPGER---------------------TGDYQIGKDHLLFGSD-GNSFISM 187
Query: 310 NDLVDAHVKALERAQPKKVG-IYNVGTGKGRS 340
D A + +E +P + + V
Sbjct: 188 EDYAIAVLDEIE--RPNHLNEHFTVAGKLEHH 217
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 Length = 372 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 5e-10
Identities = 94/375 (25%), Positives = 145/375 (38%), Gaps = 101/375 (26%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRV------TIVDNLSRGNIGAVKVLQELFPEP----GR 123
L+TG G GS+ A LL+ Y V N R + ++ +P +
Sbjct: 5 LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTER--------VDHIYQDPHTCNPK 56
Query: 124 LQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITS-NTLVVLES 182
Y DL D + + E D V + A+++V S P +Y ++ + TL +LE+
Sbjct: 57 FHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESP-EYTADVDAMGTLRLLEA 115
Query: 183 MARHGVD--TLIY-SSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSD 239
+ G++ T Y +ST YG +++P E TP P +PY AK A I +++ ++
Sbjct: 116 IRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYG 175
Query: 240 M-AVM-ILRYFNVIGSDPEGRLGEAPRPELREHGRISGACF------DAARGIIAGLKVK 291
M A IL FN E+PR R G F A I GL+
Sbjct: 176 MYACNGIL--FN----------HESPR---R------GETFVTRKITRAIANIAQGLESC 214
Query: 292 ---GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEAC 348
G S +RD+ D V L++ QP+ + + TG SV++FVE
Sbjct: 215 LYLGNMDS------LRDWGHAKDYVKMQWMMLQQEQPED---FVIATGVQYSVRQFVEMA 265
Query: 349 KKATSANIK-----------------------------VIYEPR--RPGDYAEVYS---D 374
++ + +PR RP AEV + D
Sbjct: 266 AAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRP---AEVETLLGD 322
Query: 375 PTKIRLELNWTAKYT 389
PTK +L W + T
Sbjct: 323 PTKAHEKLGWKPEIT 337
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 1e-09
Identities = 39/240 (16%), Positives = 77/240 (32%), Gaps = 44/240 (18%)
Query: 53 QSPTFSSPSPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVT-------------- 98
+ T ++ + VL+TG G++G + L LL+
Sbjct: 56 DADTLATAVNLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDA 115
Query: 99 ---IVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAK-----AVNKFFSENAFDAVM 150
+ G+ ++ +EL + RL+ + D + + + +E D ++
Sbjct: 116 RRRLEKTFDSGDPELLRHFKELAAD--RLEVVAGDKSEPDLGLDQPMWRRLAETV-DLIV 172
Query: 151 HFAA-VAYVGESTL-DPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPI 208
AA V L P N+ T ++ + Y ST E
Sbjct: 173 DSAAMVNAFPYHELFGP-----NVAG-TAELIRIALTTKLKPFTYVSTADVGAAIEPSAF 226
Query: 209 TEETPQAPINP-----------YGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEG 257
TE+ I+P YG +K E ++ + + + V + R ++
Sbjct: 227 TEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYA 286
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 23/174 (13%), Positives = 56/174 (32%), Gaps = 27/174 (15%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+ + G G +G L Y++ +R + V + + + ++
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYA---GAR-KVEQVPQYNNVKAVHFDVDWTPEEMA 58
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
DA+++ + +D + ++++ + V I
Sbjct: 59 KQLH--------GMDAIINVSGSGGKSLLKVD--------LYGAVKLMQAAEKAEVKRFI 102
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILR 246
ST + +PEK + Y AK A+ + K +++ I++
Sbjct: 103 LLSTIFS-LQPEKWI---GAGFDALKDYYIAKHFADLYLT---KETNLDYTIIQ 149
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-09
Identities = 40/231 (17%), Positives = 70/231 (30%), Gaps = 43/231 (18%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLV G G + + L + + R N L+E G + A+L
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVA---MVR-NEEQGPELRER----GASDIVVANLE 75
Query: 133 D--AKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ + A + DAV+ FAA + + ++ + G+
Sbjct: 76 EDFSHAF------ASIDAVV-FAAGSGPHTGADKTILIDLWGAIK---TIQEAEKRGIKR 125
Query: 191 LIY-SSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILR--- 246
I SS + + Y AK++A+D + K S + I+R
Sbjct: 126 FIMVSSVGTV---------DPDQGPMNMRHYLVAKRLADDEL----KRSSLDYTIVRPGP 172
Query: 247 YFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST 297
N + I+ D A+ I + + T T
Sbjct: 173 LSN----EESTGKVTVSPHFSEITRSITRH--DVAKVIAELVDQQHTIGKT 217
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 3e-09
Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRV------TIVDNLSRGNIGAVKVLQELFPEPGRLQFI 127
LVTG G G++ A LL+ YRV D R L+EL E +Q+
Sbjct: 18 LVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWR--------LRELGIEG-DIQYE 68
Query: 128 YADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITS-NTLVVLESMARH 186
D+ DA +V + + V + AA ++VG S P+ + +LE++ +
Sbjct: 69 DGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPV-TTGVVDGLGVTHLLEAIRQF 127
Query: 187 GVDTLIY-SSTCATYGEPEKMPITEETPQAPINPYGKAKKMA 227
+T Y +ST +G + E TP P +PYG AK
Sbjct: 128 SPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYG 169
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 331 YNVGTGKGRSVKEFVEACKKATSANIKVIYE--PR--RPGDYAEVYS---DPTKIRLELN 383
Y V TG +V++ + + + + + P RP AEV +P K + L
Sbjct: 254 YVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRP---AEVDVLLGNPAKAQRVLG 310
Query: 384 WTAKYT 389
W + +
Sbjct: 311 WKPRTS 316
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 5e-09
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 30/188 (15%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+TGG G G +R + D+ + SR + + + F +P R++F D+
Sbjct: 24 ILITGGTGSFG-KCFVRKVLDTTNAKKIIVYSRDELKQSE-MAMEFNDP-RMRFFIGDVR 80
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH-NI--TSNTLVVLESMARHGVD 189
D + +N D +H AA+ +V + +PL+ NI SN V+ + ++ +
Sbjct: 81 DLERLNYALEG--VDICIHAAALKHVPIAEYNPLECIKTNIMGASN---VINACLKNAIS 135
Query: 190 TLIYSST-CATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILD---FSKNSDMAVMIL 245
+I ST A PIN YG K ++ + + F +S ++
Sbjct: 136 QVIALSTDKAAN---------------PINLYGATKLCSDKLFVSANNFKGSSQTQFSVV 180
Query: 246 RYFNVIGS 253
RY NV+GS
Sbjct: 181 RYGNVVGS 188
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 1e-08
Identities = 36/178 (20%), Positives = 58/178 (32%), Gaps = 34/178 (19%)
Query: 71 THVLVTGGAGYIGSHAALRLL-KDSYRVT-IVDNLSRGNIGAVKVLQELFPEPGRLQFIY 128
+VL+ G G I H +L K + + T ++ + + +P Q I
Sbjct: 24 KNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAK--------IHKPYPT--NSQIIM 73
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV 188
D+ + A+ + A A + LD V+ +M V
Sbjct: 74 GDVLNHAAL-----KQAMQGQ--DIVYANLTGEDLDIQ---------ANSVIAAMKACDV 117
Query: 189 DTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILR 246
LI+ + Y E E A I K + A D I + S + ILR
Sbjct: 118 KRLIFVLSLGIYDEV--PGKFVEWNNAVIGEPLKPFRRAADAI----EASGLEYTILR 169
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 2e-08
Identities = 27/204 (13%), Positives = 64/204 (31%), Gaps = 30/204 (14%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD 130
++ + G AG I LL + +T+ R + + R+ I
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITL---YGR---QLKTRIPPEIIDHERVTVIEGS 60
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ + + + + V F G ++++++R +
Sbjct: 61 FQNPGXLEQAVT--NAEVV--FVGAMESGSDMAS--------------IVKALSRXNIRR 102
Query: 191 LIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNV 250
+I S GE + + + T Y + ++ A +++ + S++ ILR +
Sbjct: 103 VIGVSMAGLSGE-FPVALEKWTFDNLPISYVQGERQARNVL----RESNLNYTILRLTWL 157
Query: 251 IGSDPEGRLGEAPRPELREHGRIS 274
P ++S
Sbjct: 158 YNDPEXTDYELIPEGAQFNDAQVS 181
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 6e-08
Identities = 41/237 (17%), Positives = 71/237 (29%), Gaps = 38/237 (16%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTG +G G +L + S + G V+ Q G D+
Sbjct: 7 VLVTGASGRTGQIVYKKLKEGSDKFVAK--------GLVRSAQGKEKIGGEADVFIGDIT 58
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN-------------TLVV 179
DA ++N F DA++ + + DP K
Sbjct: 59 DADSINPAF--QGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQ 116
Query: 180 LESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSD 239
+++ GV ++ + G P+ + K+ AE + +S
Sbjct: 117 IDAAKVAGVKHIVVVGSMG--GTNPDHPLNKLGNG----NILVWKRKAEQYL----ADSG 166
Query: 240 MAVMILR---YFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293
I+R + G E +G+ + + A D A I L +
Sbjct: 167 TPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRA--DVAEVCIQALLFEEA 221
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 56/460 (12%), Positives = 119/460 (25%), Gaps = 159/460 (34%)
Query: 4 FGRARTQQRQTRPTSFGGLDYADPKRKSNFAGKFILAAALTALCI--------FLLKQSP 55
F ++Q + + + N+ KF L + + ++ ++
Sbjct: 68 FWTLLSKQEEMVQKFVEEVL------RINY--KF-LMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 56 TFSSPSPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQ 115
++ F+++ +V R+ L + L
Sbjct: 119 LYNDNQVFAKY-----NV---------------------SRLQPYLKLR-------QALL 145
Query: 116 ELFPEPGRLQFIYADLGDAK------AVNKFFSENAFDAVMHFAAVAYVG--ESTLDPL- 166
EL P I LG K + + D + + + E+ L+ L
Sbjct: 146 ELRPAKN--VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 167 KYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKM 226
K + I N + + + + + QA + K+K
Sbjct: 204 KLLYQIDPNWTSRSDHSSN--------------------IKLRIHSIQAELRRLLKSKPY 243
Query: 227 AED-IILDFSKNSDMAVMILRYFN------VIGSDPE--GRLGEAPRPELREHGRISGAC 277
++L +N+ FN + + L A +
Sbjct: 244 ENCLLVLLNVQNAK----AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 278 FDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDL----VDAHVKALERAQPKKVGIYNV 333
D + ++ K DL + + P+++ I
Sbjct: 300 PDEVKSLLL--KYLD--------------CRPQDLPREVLTTN--------PRRLSII-- 333
Query: 334 GTGKGRSVKEFVE--------ACKKATSANIKVIYEPRRPGDYAEVYSD----------P 375
S+++ + C K T+ I+ P +Y +++ P
Sbjct: 334 ----AESIRDGLATWDNWKHVNCDKLTTI-IESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 376 TKIRLELNWTAKYTNLQE---------SLEIAWRWQKSHR 406
T + L L W + SL + K
Sbjct: 389 TIL-LSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKEST 425
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 6e-04
Identities = 48/274 (17%), Positives = 80/274 (29%), Gaps = 83/274 (30%)
Query: 112 KVL----QELFPE-----PGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGEST 162
K L Q+L E P RL I + D A + D + + +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL---NV 365
Query: 163 LDPL---KYYH---------NITSNTLVVL-----ESMARHGVDTLIYSSTCA------T 199
L+P K + +I + L ++ +S V+ L S T
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 200 YGEP-----EKMPITEETP--QAPINPYGKAKKMAEDIILDFSKNS-DMAVMILRYF-NV 250
P K+ + E ++ ++ Y K D D D YF +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD---DLIPPYLDQ------YFYSH 476
Query: 251 IG-----SDPEGRLGEAPRP--ELR------EHGRISGACFDAARGIIAGLKVKGTDYST 297
IG + R+ + R H + + + LK Y
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF----Y-- 530
Query: 298 ADGTCVRDYIDVND-----LVDAHVKALERAQPK 326
+ YI ND LV+A + L + +
Sbjct: 531 ------KPYICDNDPKYERLVNAILDFLPKIEEN 558
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-06
Identities = 32/277 (11%), Positives = 63/277 (22%), Gaps = 62/277 (22%)
Query: 61 SPFSQHEEGVT----HVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVL 114
S+ E V + G +G G +L+ +VT+ + R + L
Sbjct: 5 EALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTL---IGR------RKL 55
Query: 115 QELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITS 174
+ D F D ++ +
Sbjct: 56 TFDEEAYKNVNQEVVDFEKLDDYASAF--QGHDVGFCCLGTTRGKAGAEGFVRVDRDYVL 113
Query: 175 NTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDF 234
E G S+ + Y + K E + +
Sbjct: 114 K---SAELAKAGGCKHFNLLSSKGA------------DKSSN-FLYLQVKGEVEAKVEEL 157
Query: 235 SKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294
+ + R ++ E R GE R L
Sbjct: 158 KFDR---YSVFRPGVLLCDRQESRPGEW-----------------LVRKFFGSLPDSWAS 197
Query: 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIY 331
+ + V +V A + + R + K++ +
Sbjct: 198 GHS---------VPVVTVVRAMLNNVVRPRDKQMELL 225
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 5e-06
Identities = 55/330 (16%), Positives = 95/330 (28%), Gaps = 74/330 (22%)
Query: 78 GAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAV 137
G GY + L +R+ SR N ++ ++ EP L +
Sbjct: 12 GHGYTARVLSRALAPQGWRIIG---TSR-NPDQMEAIRASGAEPLLWPGEEPSLDGVTHL 67
Query: 138 NKFFSENAFDAVMHFAAVAYVGESTLDP-LKYYHNITSNTLVVLESMARHGVDTLIYSST 196
++ A + DP L + + + Y ST
Sbjct: 68 -----------LISTAPDSGG-----DPVLAALGDQIAARA--------AQFRWVGYLST 103
Query: 197 CATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPE 256
A YG+ + + E TP P G+ + MAE ++ + + R + G
Sbjct: 104 TAVYGDHDGAWVDETTPLTPTAARGRWRVMAEQQWQAV---PNLPLHVFRLAGIYGPG-- 158
Query: 257 GRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAH 316
RG + KG V I V D+
Sbjct: 159 -------------------------RGPFS-KLGKGGIRRIIKPGQVFSRIHVEDIAQVL 192
Query: 317 VKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIK----VIYEPRRPGDYAEVY 372
++ R P +YNV + ++ + A + V ++ A +
Sbjct: 193 AASMARPDPG--AVYNVCDDEPVPPQDVIAYA--AELQGLPLPPAVDFDKADLTPMARSF 248
Query: 373 S------DPTKIRLELNWTAKYTNLQESLE 396
+I+ EL KY N + LE
Sbjct: 249 YSENKRVRNDRIKEELGVRLKYPNYRVGLE 278
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 8e-06
Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 28/164 (17%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
L+TG +G +G RLL + + V V N S G +L DL
Sbjct: 3 TLITGASGQLG-IELSRLLSERHEVIKVYNSSEIQGG-----YKL------------DLT 44
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYH-NITSNTLVVLESMARHGVDTL 191
D + F + D +++ AA+ V + ++ K Y N + ++ + +
Sbjct: 45 DFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEA-VRHIVRAGKVIDS-YI 102
Query: 192 IYSSTCATY---GEPEKMPITEETPQAPINPYGKAKKMAEDIIL 232
++ ST Y GE K EE PIN YG +K + E L
Sbjct: 103 VHIST--DYVFDGE--KGNYKEEDIPNPINYYGLSKLLGETFAL 142
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 1e-05
Identities = 42/307 (13%), Positives = 84/307 (27%), Gaps = 58/307 (18%)
Query: 56 TFSSPSPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQ 115
PSP + VL+ G G+IG A L I+ + K+ +
Sbjct: 3 VSPVPSPKGR-------VLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFK 55
Query: 116 ELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN 175
L E +Y + + +A+ K E+ D V+ ST+ I
Sbjct: 56 AL--EDKGAIIVYGLINEQEAMEKILKEHEIDIVV----------STVGGESILDQIA-- 101
Query: 176 TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFS 235
++++M G S + P P + K+ ++
Sbjct: 102 ---LVKAMKAVGTIKRFLPSEF-------GHDVNRADPVEPGLNMYREKRRVRQLV---- 147
Query: 236 KNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDY 295
+ S + + S P S I G
Sbjct: 148 EESGIPFTYI----CCNSIASWPYYNNIHP--------SEVLPPTDFFQIYG-------- 187
Query: 296 STADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSAN 355
DG ++ D+ +K ++ + ++ + ++ E +K
Sbjct: 188 ---DGNVKAYFVAGTDIGKFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRT 244
Query: 356 IKVIYEP 362
+ +
Sbjct: 245 LPRVTVT 251
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 20/145 (13%), Positives = 39/145 (26%), Gaps = 30/145 (20%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+LV GG+G +G+ S+ +D P
Sbjct: 25 ILVLGGSGALGAEVVKFFKSKSWNTISID---------------FRENPNADHSFTIKDS 69
Query: 133 DAKAVNKFFSENA-----FDAVMHFAAVAYVGESTLD-PLKYYH-----NITSNTLV--- 178
+ + + D + A G ++ D LK N+ S
Sbjct: 70 GEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHI 129
Query: 179 VLESMARHGVDTLIYSSTCATYGEP 203
+ + + G+ L ++ A
Sbjct: 130 GAKLLNQGGLFVLT-GASAALNRTS 153
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 40/296 (13%), Positives = 87/296 (29%), Gaps = 59/296 (19%)
Query: 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD 130
+ +L+ G GYIG H A L + ++ S + + K + ++
Sbjct: 5 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGS 64
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ D ++ + D V + V + + + +++++ G
Sbjct: 65 IDDHASLVEAVKN--VDVV--ISTVGSLQIES-------------QVNIIKAIKEVGTVK 107
Query: 191 LIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILR--YF 248
+ S +G + P + K I + + + F
Sbjct: 108 RFFPS---EFG----NDVDNVHAVEPAKSVFEVKAKVRRAI----EAEGIPYTYVSSNCF 156
Query: 249 --NVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306
+ S + L PR + +I G DG +
Sbjct: 157 AGYFLRSLAQAGLTAPPRD----------------KVVILG-----------DGNARVVF 189
Query: 307 IDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEP 362
+ D+ +KA++ + +Y S+ E V +K ++ Y P
Sbjct: 190 VKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 245
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 43/183 (23%), Positives = 68/183 (37%), Gaps = 41/183 (22%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTG G +G A + + + + R +V +L
Sbjct: 5 VLVTGATGLLG-RAVHKEFQQNNWHAVGCGFRRARPKFEQV----------------NLL 47
Query: 133 DAKAVNKFFSENAFDAVMHFAA-----VAYVGESTLDPLKYYH-NITSNTLVVLESMARH 186
D+ AV+ + ++H AA V E+ P N+ + + + + A
Sbjct: 48 DSNAVHHIIHDFQPHVIVHCAAERRPDVV---EN--QPDAASQLNVDA-SGNLAKEAAAV 101
Query: 187 GVDTLIYSSTCATY---GEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVM 243
G LIY S+ Y G P EE AP+N YGK K E +L+ + +
Sbjct: 102 GA-FLIYISS--DYVFDG--TNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGA----A 152
Query: 244 ILR 246
+LR
Sbjct: 153 VLR 155
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 9e-05
Identities = 46/295 (15%), Positives = 95/295 (32%), Gaps = 52/295 (17%)
Query: 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAV---KVLQELFPEPGRLQFI 127
+ VL+ GG GYIG + + + L R + + + F + G + I
Sbjct: 5 SRVLIVGGTGYIGKRIVNASISLGHPTYV---LFRPEVVSNIDKVQMLLYFKQLG-AKLI 60
Query: 128 YADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG 187
A L D + + + D V+ A + L+ LK ++E++ G
Sbjct: 61 EASLDDHQRLVDALKQ--VDVVISALAGGVLSHHILEQLK-----------LVEAIKEAG 107
Query: 188 VDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRY 247
S + + + P + K+ I + + + +
Sbjct: 108 NIKRFLPSEFGMDPDIMEHAL------QPGSITFIDKRKVRRAI----EAASIPYTYVSS 157
Query: 248 FNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307
G G L + + ++ +I G DG ++
Sbjct: 158 NMFAGYFA-GSLAQLDGHMMPPRDKV----------LIYG-----------DGNVKGIWV 195
Query: 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEP 362
D +D+ +K+++ Q +Y S KE ++ ++ + N+ IY
Sbjct: 196 DEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 250
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+VTGGA IG + +L D + + + D L + A + ++ + + F+ D+
Sbjct: 5 AMVTGGAQGIGRGISEKLAADGFDIAVAD-LPQQEEQAAETIKLIEAADQKAVFVGLDVT 63
Query: 133 DAKAVNKFFSE 143
D + E
Sbjct: 64 DKANFDSAIDE 74
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} Length = 264 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG-RLQFIYAD 130
H L+T G +G +LL Y VT+ + A++ ++E + + RLQF+ AD
Sbjct: 9 HALITAGTKGLGKQVTEKLLAKGYSVTVTY---HSDTTAMETMKETYKDVEERLQFVQAD 65
Query: 131 LGDAKAVNKFFSE 143
+ + ++K E
Sbjct: 66 VTKKEDLHKIVEE 78
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 Length = 292 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 45/179 (25%), Positives = 69/179 (38%), Gaps = 39/179 (21%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+TG G +G +L + V D +Q+L D+
Sbjct: 15 ILITGANGQLGREIQKQLKGKNVEVIPTD------------VQDL------------DIT 50
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYV--GESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ AVNKFF+E + V++ AA V E D L Y N + + G
Sbjct: 51 NVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYD-LAYKINAIG-PKNLAAAAYSVGA-E 107
Query: 191 LIYSSTCATY---GEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILR 246
++ ST Y GE ++ PITE P + YGK K E+ + + I+R
Sbjct: 108 IVQIST--DYVFDGEAKE-PITEFDEVNPQSAYGKTKLEGENFVKALNPKY----YIVR 159
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Length = 256 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 3e-04
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VTGG G IG+ RL KD +RV + VK L++ ++G
Sbjct: 16 AYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSP--RRVKWLEDQKALGFDFYASEGNVG 73
Query: 133 DAKAVNKFFSE 143
D + + F +
Sbjct: 74 DWDSTKQAFDK 84
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} Length = 287 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 3e-04
Identities = 40/179 (22%), Positives = 59/179 (32%), Gaps = 39/179 (21%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V++TG G +G L + Y + D + L D+
Sbjct: 8 VIITGANGQLGKQLQEELNPEEYDIYPFD------------KKLL------------DIT 43
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYV--GESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ V + E ++H AA V E D L Y N V + G
Sbjct: 44 NISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERD-LAYVINAIG-ARNVAVASQLVGA-K 100
Query: 191 LIYSSTCATY---GEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILR 246
L+Y ST Y G+ + E APIN YG +K E + + I+R
Sbjct: 101 LVYIST--DYVFQGDRPE-GYDEFHNPAPINIYGASKYAGEQFVKELHNKY----FIVR 152
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 3e-04
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+VTGG IG A L + + I G V+ EL R+ F+ ADL
Sbjct: 32 AIVTGGRRGIGLGIARALAASGFDIAITGIGDAE--GVAPVIAELSGLGARVIFLRADLA 89
Query: 133 DAKAVNKFFSE 143
D +
Sbjct: 90 DLSSHQATVDA 100
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
LVTG IG A RL K+ RV + RG G L+EL D+
Sbjct: 24 VALVTGATSGIGLEIARRLGKEGLRVFVCA---RGEEGLRTTLKELREAGVEADGRTCDV 80
Query: 132 GDAKAVNKFFSE 143
+ +
Sbjct: 81 RSVPEIEALVAA 92
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A Length = 450 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 4e-04
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
VL+ G+G++ L +VT+ ++ ++L I D+
Sbjct: 5 SVLM-LGSGFVTRPTLDVLTDSGIKVTVACR-------TLESAKKLSAGVQHSTPISLDV 56
Query: 132 GDAKAVNKFFSENAFDAVMH 151
D A++ ++ D V+
Sbjct: 57 NDDAALDAEVAK--HDLVIS 74
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 12/72 (16%), Positives = 18/72 (25%), Gaps = 3/72 (4%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
VTG + IG A L V R + L + D+
Sbjct: 26 TAFVTGVSSGIGLAVARTLAARGIAVYGCA---RDAKNVSAAVDGLRAAGHDVDGSSCDV 82
Query: 132 GDAKAVNKFFSE 143
V+ +
Sbjct: 83 TSTDEVHAAVAA 94
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 14/71 (19%), Positives = 33/71 (46%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+++ GG +G+ A +S + + + ++ + A K+ EL + ++ +DL
Sbjct: 14 IVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLS 73
Query: 133 DAKAVNKFFSE 143
+ + V K F
Sbjct: 74 NEEEVAKLFDF 84
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTGG IG A L+ V IV GAV+ L+ L G +++ D+
Sbjct: 14 YLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDIT 73
Query: 133 DAKAVNKFFSENAFDAVM 150
+ A DAV
Sbjct: 74 NEDET-----ARAVDAVT 86
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 6e-04
Identities = 42/292 (14%), Positives = 84/292 (28%), Gaps = 59/292 (20%)
Query: 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD 130
+ +L+ GG GYIG+H LK + + +R N +L E + + +
Sbjct: 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYV---FTRPNSSKTTLLDEF--QSLGAIIVKGE 66
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
L + + + + + D V +A+A LD K +LE++ G
Sbjct: 67 LDEHEKLVELMKK--VDVV--ISALA--FPQILDQFK-----------ILEAIKVAGNIK 109
Query: 191 LIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNV 250
S +G + P + K+M I + +++ +
Sbjct: 110 RFLPS---DFG----VEEDRINALPPFEALIERKRMIRRAI----EEANIPYTYV----S 154
Query: 251 IGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310
+ RP + + G G
Sbjct: 155 ANCFASYFINYLLRPYDPKD-----------EITVYG-----------TGEAKFAMNYEQ 192
Query: 311 DLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEP 362
D+ +K + + + + E + +K K I+ P
Sbjct: 193 DIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVP 244
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 6e-04
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 3/73 (4%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG-RLQFIYAD 130
++TG IG A L K + + + V E+ + AD
Sbjct: 27 TAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPD--EIRTVTDEVAGLSSGTVLHHPAD 84
Query: 131 LGDAKAVNKFFSE 143
+ + +
Sbjct: 85 MTKPSEIADMMAM 97
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 269 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 7e-04
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VTGG G +G+ + RL V + + S N L + D+
Sbjct: 28 AFVTGGMGGLGAAISRRLHDAGMAVAV--SHSERNDHVSTWLMHERDAGRDFKAYAVDVA 85
Query: 133 DAKAVNKFFSE 143
D ++ + +
Sbjct: 86 DFESCERCAEK 96
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Length = 258 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 7e-04
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VL+TG + IG A + +V + + + + + + G F ADL
Sbjct: 10 VLITGSSQGIGLATARLFARAGAKVGLHGRKAPA--NIDETIASMRADGGDAAFFAADLA 67
Query: 133 DAKAVNKFFSE 143
++A + E
Sbjct: 68 TSEACQQLVDE 78
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 8e-04
Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG-RLQFIYADL 131
LVTGG +G A L + Y V I R E+ G ++ + D+
Sbjct: 36 ALVTGGGTGVGRGIAQALSAEGYSVVITG---RRPDVLDAAAGEIGGRTGNIVRAVVCDV 92
Query: 132 GDAKAVNKFFSENAFDAVM 150
GD V F AV
Sbjct: 93 GDPDQV-----AALFAAVR 106
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} PDB: 3sj7_A* Length = 246 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 8e-04
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTG + IG AL+L ++ Y V + S+ A V++E+ + I A++
Sbjct: 7 ALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKE--KAEAVVEEIKAKGVDSFAIQANVA 64
Query: 133 DAKAVNKFFSE 143
DA V E
Sbjct: 65 DADEVKAMIKE 75
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 413 | |||
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 100.0 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 100.0 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 100.0 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.98 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.97 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.97 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.97 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.97 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.97 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.97 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.97 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.97 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.96 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.96 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.96 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.96 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.96 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.96 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.96 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.96 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.96 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.96 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.96 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.96 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.96 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.96 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.96 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.96 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.96 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.96 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.96 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.96 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.96 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.96 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.96 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.96 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.96 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.96 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.96 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.96 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.96 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.96 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.96 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.96 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.95 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.95 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.95 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.95 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.95 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.95 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.95 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.95 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.95 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.95 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.95 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.95 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.95 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.95 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.95 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.95 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.95 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.95 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.95 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.95 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.95 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.95 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.95 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.95 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.95 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.95 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.95 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.95 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.95 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.95 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.95 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.95 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.95 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.95 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.95 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.95 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.95 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.95 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.95 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.95 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.95 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.95 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.95 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.95 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.95 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.95 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.95 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.95 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.95 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.95 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.95 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.95 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.95 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.95 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.95 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.95 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.95 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.95 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.95 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.95 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.95 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.95 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.95 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.95 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.95 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.95 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.95 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.95 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.95 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.95 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.95 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.95 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.95 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.95 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.95 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.95 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.95 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.95 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.95 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.95 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.95 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.95 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.95 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.95 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.95 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.95 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.95 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.95 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.95 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.95 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.94 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.94 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.94 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.94 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.94 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.94 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.94 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.94 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.94 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.94 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.94 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.94 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.94 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.94 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.94 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.94 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.94 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.94 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.94 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.94 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.94 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.94 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.94 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.94 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.94 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.94 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.94 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.94 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.94 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.94 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.94 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.94 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.94 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.94 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.94 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.94 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.94 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.94 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.94 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.94 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.94 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.94 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.94 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.94 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.94 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.94 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.94 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.94 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.94 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.94 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.94 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.94 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.94 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.94 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.94 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.94 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.93 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.93 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.93 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.93 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.93 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.93 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.93 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.93 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.93 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.93 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.93 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.93 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.93 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.93 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.93 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.93 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.93 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.93 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.93 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.93 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.93 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.93 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.93 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.92 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.92 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.92 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.92 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.92 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.91 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.91 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.91 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.9 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.9 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.9 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.9 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.89 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.88 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.88 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.88 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.87 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.86 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.86 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.85 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.84 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.83 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.83 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.83 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.8 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.8 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.75 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.74 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.74 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.74 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.74 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.72 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.57 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.52 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 99.27 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.15 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.12 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 99.03 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.95 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.85 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.83 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.81 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.81 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.68 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.62 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.55 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.52 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.46 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.45 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.36 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.33 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.3 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.26 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.13 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.12 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.11 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 98.08 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 98.01 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.0 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.98 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.85 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.83 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.81 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.8 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.8 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 97.8 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.79 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.78 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.74 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.73 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.73 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.72 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.7 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.7 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.64 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.62 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 97.61 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.6 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.6 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.59 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 97.59 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 97.57 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.57 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.57 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.56 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.56 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.55 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.52 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.52 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.5 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.5 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.5 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.47 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.47 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.47 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.46 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.46 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 97.44 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.44 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.42 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.4 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.38 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.35 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.31 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.31 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.3 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.3 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.29 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 97.29 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.27 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.24 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.24 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.23 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.18 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.18 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.17 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.13 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 97.12 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 97.12 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.11 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 97.1 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.09 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.08 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 97.08 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 97.07 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 97.03 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.03 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.01 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.0 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.98 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.97 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 96.93 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.92 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.9 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.9 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 96.88 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.88 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.84 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 96.81 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.8 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 96.79 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 96.75 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.71 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.7 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.68 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.67 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 96.66 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.66 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.64 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.63 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.61 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 96.53 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.52 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 96.51 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 96.51 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.5 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 96.49 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.47 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 96.46 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 96.44 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.43 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.42 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 96.31 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.3 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.3 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.29 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 96.29 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.28 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.28 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.24 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.24 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 96.23 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.21 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 96.21 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 96.21 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.2 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 96.2 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.2 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.19 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 96.17 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 96.16 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 96.14 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 96.14 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.13 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.12 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 96.11 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 96.11 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.07 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.06 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 96.05 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.03 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.03 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.03 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 95.99 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 95.99 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 95.97 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 95.95 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.93 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 95.92 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 95.92 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.91 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.91 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.9 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 95.9 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.89 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 95.87 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.8 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.79 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 95.73 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.73 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.72 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 95.71 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.71 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 95.71 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.7 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 95.67 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 95.67 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 95.66 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 95.65 |
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-51 Score=390.43 Aligned_cols=333 Identities=38% Similarity=0.642 Sum_probs=287.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++++++|+++|++|++++|.........+.+.... +.++.++.+|++|++++.++++..++|+||
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (341)
T 3enk_A 6 GTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKIT--GKTPAFHETDVSDERALARIFDAHPITAAI 83 (341)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHH--SCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred cEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhc--CCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence 899999999999999999999999999999987766665555544432 247899999999999999999777899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
||||..........+...+++|+.++.++++++++.++++||++||.++||.....+++|+.+..|.++|+.||+++|.+
T Consensus 84 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 163 (341)
T 3enk_A 84 HFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDETFPLSATNPYGQTKLMAEQI 163 (341)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTTSCCBCSSHHHHHHHHHHHH
T ss_pred ECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Confidence 99998765555567778999999999999999999998999999999999988888899999999999999999999999
Q ss_pred HHHHHhhCC-CcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccH
Q 015080 231 ILDFSKNSD-MAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 231 ~~~~~~~~g-i~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
++.++.+.+ ++++++||+.||||...+.+|+.+... .+.+++.+...+.+..+.+.++|..+.++++.+.++|+|+
T Consensus 164 ~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v 240 (341)
T 3enk_A 164 LRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGI---PNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIHV 240 (341)
T ss_dssp HHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSS---CSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEEEH
T ss_pred HHHHhhcCCCceEEEEeeccccCCccccccCCCcccC---ccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeEEH
Confidence 999988865 999999999999998766555443321 1266777777666655558888877788889999999999
Q ss_pred HHHHHHHHHHHHhcC-CCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCccccc
Q 015080 310 NDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKY 388 (413)
Q Consensus 310 ~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 388 (413)
+|+|++++.+++... ...+++||+++++++|+.|+++.+.+.+|.+.++...+..........+|++|++++|||+|++
T Consensus 241 ~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 320 (341)
T 3enk_A 241 VDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGDVAECYANPAAAAETIGWKAER 320 (341)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHHHHCCCCCC
T ss_pred HHHHHHHHHHHHhhhcCCcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCCCCCCccccccCHHHHHHHcCCCCCC
Confidence 999999999998621 1123799999999999999999999999999988888877777778899999999999999998
Q ss_pred ccHHHHHHHHHHHHHhccCCC
Q 015080 389 TNLQESLEIAWRWQKSHRGGY 409 (413)
Q Consensus 389 ~~~~e~l~~~~~~~~~~~~~~ 409 (413)
+++++|+++++||+++.++|
T Consensus 321 -~l~~~l~~~~~~~~~~~~~~ 340 (341)
T 3enk_A 321 -DLERMCADHWRWQENNPRGF 340 (341)
T ss_dssp -CHHHHHHHHHHHHHHSTTSC
T ss_pred -CHHHHHHHHHHHHHhcCccC
Confidence 99999999999999998876
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-49 Score=377.85 Aligned_cols=328 Identities=40% Similarity=0.689 Sum_probs=274.7
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
||+|||||||||||++++++|+++|++|++++|...... +. + ..+++++.+|++|.+++.+++++.++|+|
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~---~---~~~~~~~~~D~~~~~~~~~~~~~~~~d~v 71 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE---DA---I---TEGAKFYNGDLRDKAFLRDVFTQENIEAV 71 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG---GG---S---CTTSEEEECCTTCHHHHHHHHHHSCEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch---hh---c---CCCcEEEECCCCCHHHHHHHHhhcCCCEE
Confidence 689999999999999999999999999999988654322 11 1 13688999999999999999965589999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAED 229 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 229 (413)
||+||......+..+++..+++|+.++.++++++++.++++||++||.++|+.....+++|+.+..|.++|+.+|+++|.
T Consensus 72 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~ 151 (330)
T 2c20_A 72 MHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEK 151 (330)
T ss_dssp EECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTTSCCCCSSHHHHHHHHHHH
T ss_pred EECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcCCCCCCCChHHHHHHHHHH
Confidence 99999765433345677889999999999999999999899999999999998777789999999899999999999999
Q ss_pred HHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccH
Q 015080 230 IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 230 ~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
+++.++.++|++++++||+.||||+..+.+|+..... ..+++.+...+.+..+.+.++|..+..+++++.++|+|+
T Consensus 152 ~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v 227 (330)
T 2c20_A 152 MLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPE----THLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHV 227 (330)
T ss_dssp HHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSC----CSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEH
T ss_pred HHHHHHHHhCCcEEEEecCcccCCCCcCccccccccc----cchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeH
Confidence 9999998889999999999999998655554432111 256777776665544447787765556678889999999
Q ss_pred HHHHHHHHHHHHhcCC-CCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCccccc
Q 015080 310 NDLVDAHVKALERAQP-KKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKY 388 (413)
Q Consensus 310 ~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 388 (413)
+|+|++++.+++.... ..+++||+++++++|+.|+++.+.+.+|.+.++...+..........+|++|++++|||+|++
T Consensus 228 ~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 307 (330)
T 2c20_A 228 EDLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPRY 307 (330)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECCCSSCCSEECBCCHHHHHHHCCCCSC
T ss_pred HHHHHHHHHHHhccccCCCCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCCCcccccccCHHHHHHHhCCCCcc
Confidence 9999999999986532 224799999999999999999999999998887776665555567889999999999999997
Q ss_pred ccHHHHHHHHHHHHHhccCCCc
Q 015080 389 TNLQESLEIAWRWQKSHRGGYA 410 (413)
Q Consensus 389 ~~~~e~l~~~~~~~~~~~~~~~ 410 (413)
++++++|+++++|++++.++|.
T Consensus 308 ~~l~~~l~~~~~~~~~~~~~~~ 329 (330)
T 2c20_A 308 VNVKTIIEHAWNWHQKQPNGYE 329 (330)
T ss_dssp CCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCHHHHHHHHHHHHHHhhhccC
Confidence 6899999999999999999885
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-49 Score=380.30 Aligned_cols=319 Identities=24% Similarity=0.370 Sum_probs=267.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCC--CCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE--PGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|||||||||||++|+++|+++|++|++++|...........+...... ..++.++.+|++|.+++.+++ .++|+
T Consensus 26 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~ 103 (351)
T 3ruf_A 26 KTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVM--KGVDH 103 (351)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHT--TTCSE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh--cCCCE
Confidence 89999999999999999999999999999998766555444444332111 047999999999999999999 58999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
|||+||.........++...+++|+.++.++++++++.++++|||+||.++|+.....+++|+.+..|.++|+.+|.++|
T Consensus 104 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E 183 (351)
T 3ruf_A 104 VLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNE 183 (351)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHHHH
T ss_pred EEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccCCCCCCCChhHHHHHHHH
Confidence 99999976555556677889999999999999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeeccc
Q 015080 229 DIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308 (413)
Q Consensus 229 ~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~ 308 (413)
.+++.++++.|++++++||+.||||+..+.. ..+.+++.++..+..+.+ +.+.| ++++.++|+|
T Consensus 184 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~g------~g~~~~~~i~ 247 (351)
T 3ruf_A 184 IYAQVYARTYGFKTIGLRYFNVFGRRQDPNG---------AYAAVIPKWTAAMLKGDD-VYING------DGETSRDFCY 247 (351)
T ss_dssp HHHHHHHHHHCCCCEEEEECSEESTTCCCCS---------TTCCHHHHHHHHHHHTCC-CEEES------SSCCEECCEE
T ss_pred HHHHHHHHHhCCCEEEEeeCceeCcCCCCCc---------chhhHHHHHHHHHHcCCC-cEEeC------CCCeEEeeEE
Confidence 9999999888999999999999999754321 112567777777777766 77777 8889999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCC-----CceeEecCCCCCCccccccCHHHHHHhcC
Q 015080 309 VNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSA-----NIKVIYEPRRPGDYAEVYSDPTKIRLELN 383 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~-----~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 383 (413)
++|+|++++.++.......+++||+++++++|+.|+++.+.+.+|. +.+....+..........+|++|++++||
T Consensus 248 v~Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 327 (351)
T 3ruf_A 248 IDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLK 327 (351)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EEECCCTTCCSBCCBCCHHHHHHHC
T ss_pred HHHHHHHHHHHHhhccccCCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccccCCCCCccceeeeCHHHHHHHhC
Confidence 9999999999998632223479999999999999999999999998 33333444445556678899999999999
Q ss_pred cccccccHHHHHHHHHHHHHhccCC
Q 015080 384 WTAKYTNLQESLEIAWRWQKSHRGG 408 (413)
Q Consensus 384 ~~p~~~~~~e~l~~~~~~~~~~~~~ 408 (413)
|+|++ +++++|+++++||+++.++
T Consensus 328 ~~p~~-~~~~~l~~~~~~~~~~~~g 351 (351)
T 3ruf_A 328 YRPNI-KIREGLRLSMPWYVRFLKG 351 (351)
T ss_dssp CCCCC-CHHHHHHHHHHHHHHHHC-
T ss_pred CCCCC-CHHHHHHHHHHHHHHhhcC
Confidence 99999 8999999999999988653
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-48 Score=372.63 Aligned_cols=334 Identities=40% Similarity=0.657 Sum_probs=274.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC------CchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG------NIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSEN 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 144 (413)
|+|||||||||||++++++|+++|++|++++|..+. ..+..+.+.+.. +.++.++.+|++|.+++.++++..
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~~ 80 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT--GRSVEFEEMDILDQGALQRLFKKY 80 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH--TCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhcc--CCceEEEECCCCCHHHHHHHHHhc
Confidence 789999999999999999999999999999986543 233333333221 246899999999999999999655
Q ss_pred CCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCC-CChhHHH
Q 015080 145 AFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAP-INPYGKA 223 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~-~~~Y~~s 223 (413)
++|+||||||........+++...+++|+.++.++++++++.++++||++||.++|+.....+++|+.+..| .++|+.|
T Consensus 81 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~~~~~p~~~~Y~~s 160 (348)
T 1ek6_A 81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKS 160 (348)
T ss_dssp CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHHH
T ss_pred CCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCCCCcCCCCCCCCCCCchHHH
Confidence 899999999976543344567789999999999999999998889999999999999877778999988877 8899999
Q ss_pred HHHHHHHHHHHHhh-CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHh-ccccceeEecccccCCCCc
Q 015080 224 KKMAEDIILDFSKN-SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAAR-GIIAGLKVKGTDYSTADGT 301 (413)
Q Consensus 224 K~~~e~~~~~~~~~-~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~g~~~~~~~~~ 301 (413)
|+++|.+++.++.+ .+++++++||+.+|||++.+.+|+.+... ...+++.+...+. .+.+ +.++|..+..++++
T Consensus 161 K~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~g~ 236 (348)
T 1ek6_A 161 KFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGI---PNNLMPYVSQVAIGRREA-LNVFGNDYDTEDGT 236 (348)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSS---CCSHHHHHHHHHHTSSSC-EEEECSCSSSSSSS
T ss_pred HHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccc---hhhHHHHHHHHHHhcCCC-eEEeCCcccCCCCc
Confidence 99999999999877 23999999999999997655444432210 1256777777776 3444 77777655566788
Q ss_pred eeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHH
Q 015080 302 CVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRL 380 (413)
Q Consensus 302 ~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 380 (413)
+.++|+|++|+|++++.+++... ...+++||+++++++|+.|+++.+.+.+|.+.+....+..........+|++|+++
T Consensus 237 ~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 316 (348)
T 1ek6_A 237 GVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQE 316 (348)
T ss_dssp CEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHH
T ss_pred eEEeeEEHHHHHHHHHHHHhcccccCCceEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCCccchhhccCHHHHHH
Confidence 99999999999999999998753 22237999999999999999999999999988877766655555677899999999
Q ss_pred hcCcccccccHHHHHHHHHHHHHhccCCCcc
Q 015080 381 ELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411 (413)
Q Consensus 381 ~lG~~p~~~~~~e~l~~~~~~~~~~~~~~~~ 411 (413)
+|||+|++ +++++|+++++|++++.++|+.
T Consensus 317 ~lG~~p~~-~l~~~l~~~~~w~~~~~~~~~~ 346 (348)
T 1ek6_A 317 ELGWTAAL-GLDRMCEDLWRWQKQNPSGFGT 346 (348)
T ss_dssp TTCCCCCC-CHHHHHHHHHHHHHHCTTCSCC
T ss_pred hcCCCCCC-CHHHHHHHHHHHHHhccccccc
Confidence 99999998 8999999999999999888864
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-48 Score=369.67 Aligned_cols=335 Identities=38% Similarity=0.669 Sum_probs=271.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+||||++++++|+++|++|++++|..+......+.+.+.. +.++.++.+|++|++++.++++..++|+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vi 78 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH--TSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhc--CCcceEEEccCCCHHHHHHHhhccCCCEEE
Confidence 479999999999999999999999999999876544333333333221 246788999999999999998765799999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCC-CChhHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAP-INPYGKAKKMAED 229 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~-~~~Y~~sK~~~e~ 229 (413)
||||........+++...+++|+.++.++++++++.++++||++||.++|+.....+++|+.+..| .++|+.||+++|.
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~ 158 (338)
T 1udb_A 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQ 158 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHHH
T ss_pred ECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCcccCCCCCCChHHHHHHHHHH
Confidence 999976443334567778999999999999999998889999999999998776667888887655 7899999999999
Q ss_pred HHHHHHhhC-CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeeccc
Q 015080 230 IILDFSKNS-DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308 (413)
Q Consensus 230 ~~~~~~~~~-gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~ 308 (413)
+++.++.+. +++++++||+++|||.+.+.+|+.+... ...+++.+...+.+..+.+.++|..+..+++.+.++|+|
T Consensus 159 ~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 235 (338)
T 1udb_A 159 ILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGI---PNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235 (338)
T ss_dssp HHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSS---CCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEE
T ss_pred HHHHHHHhcCCCceEEEeeceecCCCcccccccccccc---hhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEE
Confidence 999998876 8999999999999997655555433210 125667666666543333777765555557788999999
Q ss_pred HHHHHHHHHHHHHhcC-CCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCcccc
Q 015080 309 VNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAK 387 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 387 (413)
++|+|++++.+++... ...+++||+++++++|+.|+++.+.+.+|.+.+....+....+.....+|++|++++|||+|+
T Consensus 236 v~Dva~a~~~~l~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 315 (338)
T 1udb_A 236 VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVT 315 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECCCTTCCSBCCBCCHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHhhhhccCCCcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCCCCCchhhhhcCHHHHHHHcCCCcC
Confidence 9999999999998642 222369999999999999999999999998888776666555556678899999999999999
Q ss_pred cccHHHHHHHHHHHHHhccCCCcc
Q 015080 388 YTNLQESLEIAWRWQKSHRGGYAS 411 (413)
Q Consensus 388 ~~~~~e~l~~~~~~~~~~~~~~~~ 411 (413)
+ +++++|+++++|++++.++|++
T Consensus 316 ~-~l~~~l~~~~~w~~~~~~~~~~ 338 (338)
T 1udb_A 316 R-TLDEMAQDTWHWQSRHPQGYPD 338 (338)
T ss_dssp C-CHHHHHHHHHHHHHHCTTCSCC
T ss_pred C-CHHHHHHHHHHHHHhcccccCC
Confidence 8 8999999999999999998874
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-49 Score=376.28 Aligned_cols=315 Identities=25% Similarity=0.396 Sum_probs=262.1
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
||+|||||||||||++|+++|+++| ++|++++|..... ....+..+.. ..++.++.+|++|.+++.++++..++|
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~--~~~~l~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d 100 (346)
T 4egb_A 24 AMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSG--NLNNVKSIQD-HPNYYFVKGEIQNGELLEHVIKERDVQ 100 (346)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTC--CGGGGTTTTT-CTTEEEEECCTTCHHHHHHHHHHHTCC
T ss_pred CCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecccccc--chhhhhhhcc-CCCeEEEEcCCCCHHHHHHHHhhcCCC
Confidence 4899999999999999999999999 6788887654222 1222222222 258999999999999999999766799
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCC-CCCCCCCCCCCCCCChhHHHHHH
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEP-EKMPITEETPQAPINPYGKAKKM 226 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~-~~~~~~e~~~~~~~~~Y~~sK~~ 226 (413)
+|||+||.........++...+++|+.++.++++++++.++++|||+||.++|+.. ...+++|+.+..|.++|+.+|++
T Consensus 101 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~~~~~p~~~Y~~sK~~ 180 (346)
T 4egb_A 101 VIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKAS 180 (346)
T ss_dssp EEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTTSCCCCCSHHHHHHHH
T ss_pred EEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCCCCCCCCChhHHHHHH
Confidence 99999998766555667788999999999999999999999999999999999987 45689999999999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeec
Q 015080 227 AEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306 (413)
Q Consensus 227 ~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 306 (413)
+|.+++.+++++|++++++||+.||||+.... .+++.++..+..+.+ +.+.| ++.+.++|
T Consensus 181 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~ 240 (346)
T 4egb_A 181 ADMIALAYYKTYQLPVIVTRCSNNYGPYQYPE-------------KLIPLMVTNALEGKK-LPLYG------DGLNVRDW 240 (346)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-------------SHHHHHHHHHHTTCC-CEEET------TSCCEECE
T ss_pred HHHHHHHHHHHhCCCEEEEeecceeCcCCCcc-------------chHHHHHHHHHcCCC-ceeeC------CCCeEEee
Confidence 99999999988899999999999999975322 567778888887776 77777 88899999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCce-eEecCCCCCCccccccCHHHHHHhcCcc
Q 015080 307 IDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIK-VIYEPRRPGDYAEVYSDPTKIRLELNWT 385 (413)
Q Consensus 307 i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 385 (413)
+|++|+|++++.+++.+..+ ++||+++++++++.|+++.+.+.+|.+.+ +...+..........+|++|++++|||+
T Consensus 241 i~v~Dva~a~~~~~~~~~~g--~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 318 (346)
T 4egb_A 241 LHVTDHCSAIDVVLHKGRVG--EVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKMKNEFDWE 318 (346)
T ss_dssp EEHHHHHHHHHHHHHHCCTT--CEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC--CCCSCCCBCCHHHHHHHCCC
T ss_pred EEHHHHHHHHHHHHhcCCCC--CEEEECCCCceeHHHHHHHHHHHhCCCcccccccCCCCCCcceeeccHHHHHHHcCCC
Confidence 99999999999999987643 79999999999999999999999998876 4455555555566789999999999999
Q ss_pred cccccHHHHHHHHHHHHHhccCCCc
Q 015080 386 AKYTNLQESLEIAWRWQKSHRGGYA 410 (413)
Q Consensus 386 p~~~~~~e~l~~~~~~~~~~~~~~~ 410 (413)
|++ +++++|+++++||+++.+.+.
T Consensus 319 p~~-~~~e~l~~~~~~~~~~~~~~~ 342 (346)
T 4egb_A 319 PKY-TFEQGLQETVQWYEKNEEWWK 342 (346)
T ss_dssp CCC-CHHHHHHHHHHHHHHCHHHHG
T ss_pred CCC-CHHHHHHHHHHHHHhhhhhhh
Confidence 999 899999999999999876553
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-48 Score=376.51 Aligned_cols=336 Identities=38% Similarity=0.607 Sum_probs=270.6
Q ss_pred eEEEEEcCCChHHHHHHHHHH-HCCCEEEEEecCCCCC---------chhhhhhhhhcCC--CCc---eEEEEccCCCHH
Q 015080 71 THVLVTGGAGYIGSHAALRLL-KDSYRVTIVDNLSRGN---------IGAVKVLQELFPE--PGR---LQFIYADLGDAK 135 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~-~~G~~V~~~~r~~~~~---------~~~~~~~~~~~~~--~~~---~~~~~~Dl~d~~ 135 (413)
|+||||||+||||++++++|+ ++|++|++++|..... +...+.+.++... ..+ +.++.+|++|++
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 82 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNED 82 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCHH
Confidence 689999999999999999999 9999999999865442 1222222332221 124 889999999999
Q ss_pred HHHHHhhcCC-CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCC-------CCC
Q 015080 136 AVNKFFSENA-FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPE-------KMP 207 (413)
Q Consensus 136 ~~~~~~~~~~-~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~-------~~~ 207 (413)
++.+++++.+ +|+||||||.........+++..+++|+.++.++++++++.++++||++||.++|+... ..+
T Consensus 83 ~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~ 162 (397)
T 1gy8_A 83 FLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEP 162 (397)
T ss_dssp HHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCCC
T ss_pred HHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCcccccccccC
Confidence 9999996545 99999999976543344567789999999999999999999999999999999998765 568
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHH-----HHHh
Q 015080 208 ITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACF-----DAAR 282 (413)
Q Consensus 208 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 282 (413)
++|+.+..|.++|+.||+++|.+++.++.++|++++++||+.||||+..+.+|+.... ...+++.++ ..+.
T Consensus 163 ~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~ 238 (397)
T 1gy8_A 163 IDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQG----STHLIPIILGRVMSDIAP 238 (397)
T ss_dssp BCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTT----CCSHHHHHHHHHHHHHSC
T ss_pred cCccCCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccc----hhHHHHHHHHHHHHHHHh
Confidence 8999998889999999999999999999888999999999999999865554443221 125666655 3333
Q ss_pred ccc----------cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCC----Cc---cEEEecCCCcccHHHHH
Q 015080 283 GII----------AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK----KV---GIYNVGTGKGRSVKEFV 345 (413)
Q Consensus 283 ~~~----------~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~----~~---~~yni~~~~~~s~~e~~ 345 (413)
+.. +.+.++|..+..+++++.++|||++|+|++++.+++..... .+ ++||+++++++|+.|++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~ 318 (397)
T 1gy8_A 239 DQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVI 318 (397)
T ss_dssp C-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHH
T ss_pred cCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCCcccHHHHH
Confidence 322 23777765555557889999999999999999999864322 13 69999999999999999
Q ss_pred HHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccCCCc
Q 015080 346 EACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYA 410 (413)
Q Consensus 346 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~~ 410 (413)
+.+.+.+|.+.++...+..........+|++|++++|||+|++++++++|+++++|++++.++|.
T Consensus 319 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l~~~~~~~~~~~~~~~ 383 (397)
T 1gy8_A 319 EVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPNGYA 383 (397)
T ss_dssp HHHHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCTTTTC
T ss_pred HHHHHHhCCCCCeeeCCCCCCcccccccCHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhcccccC
Confidence 99999999988877766655556678899999999999999976899999999999999988774
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-48 Score=364.65 Aligned_cols=303 Identities=28% Similarity=0.455 Sum_probs=247.9
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
||+|||||||||||++|+++|+++| .|+++++........ + ...+.++.+|++| +++.+++ .++|+|
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~~---~------~~~~~~~~~Dl~~-~~~~~~~--~~~d~v 67 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEEF---V------NEAARLVKADLAA-DDIKDYL--KGAEEV 67 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGGG---S------CTTEEEECCCTTT-SCCHHHH--TTCSEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChhh---c------CCCcEEEECcCCh-HHHHHHh--cCCCEE
Confidence 6899999999999999999999999 455554433222111 1 2578999999999 9999999 689999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAED 229 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 229 (413)
||+|+........+++...+++|+.++.++++++++.++++|||+||.++||.....+++|+.+..|.++|+.+|.++|.
T Consensus 68 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~ 147 (313)
T 3ehe_A 68 WHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEA 147 (313)
T ss_dssp EECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHH
T ss_pred EECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 99999765555677889999999999999999999999999999999999998888889999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccH
Q 015080 230 IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 230 ~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
+++.++.++|++++++||+.||||+... .++..++..+..+...+.+.| ++++.++|+|+
T Consensus 148 ~~~~~~~~~g~~~~ilRp~~v~G~~~~~--------------~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~i~v 207 (313)
T 3ehe_A 148 LIESYCHTFDMQAWIYRFANVIGRRSTH--------------GVIYDFIMKLKRNPEELEILG------NGEQNKSYIYI 207 (313)
T ss_dssp HHHHHHHHTTCEEEEEECSCEESTTCCC--------------SHHHHHHHHHHHCTTEEEEST------TSCCEECCEEH
T ss_pred HHHHHHHhcCCCEEEEeeccccCcCCCc--------------ChHHHHHHHHHcCCCceEEeC------CCCeEEeEEEH
Confidence 9999999999999999999999997432 345555555554433366777 88899999999
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCC---CCCCccccccCHHHHHHhcCccc
Q 015080 310 NDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR---RPGDYAEVYSDPTKIRLELNWTA 386 (413)
Q Consensus 310 ~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~---~~~~~~~~~~d~~k~~~~lG~~p 386 (413)
+|+|++++.+++... .+++||+++++++|+.|+++.+.+.+|.+.++...+. +........+|++|++ +|||+|
T Consensus 208 ~Dva~a~~~~~~~~~--~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lG~~p 284 (313)
T 3ehe_A 208 SDCVDAMLFGLRGDE--RVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLK-RLGWKP 284 (313)
T ss_dssp HHHHHHHHHHTTCCS--SEEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC------------CCBCCHHHH-HHTCCC
T ss_pred HHHHHHHHHHhccCC--CCceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCccCCccccceeccCHHHHH-HcCCCC
Confidence 999999999998333 3479999999999999999999999999887766543 2333445778999995 699999
Q ss_pred ccccHHHHHHHHHHHHHhccCCC
Q 015080 387 KYTNLQESLEIAWRWQKSHRGGY 409 (413)
Q Consensus 387 ~~~~~~e~l~~~~~~~~~~~~~~ 409 (413)
++ +++|+|+++++||+++.+..
T Consensus 285 ~~-~~~e~l~~~~~~~~~~~~~~ 306 (313)
T 3ehe_A 285 RY-NSEEAVRMAVRDLVEDLDEE 306 (313)
T ss_dssp SC-CHHHHHHHHHHHHHHHHHC-
T ss_pred CC-CHHHHHHHHHHHHHhCcccc
Confidence 99 89999999999999987654
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-47 Score=360.35 Aligned_cols=295 Identities=19% Similarity=0.314 Sum_probs=257.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++|+++|+++|++|++++|. ..... + .++.++.+|++ .+++.+++ .++|+||
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~----~-------~~~~~~~~Dl~-~~~~~~~~--~~~d~Vi 67 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRS-IGNKA----I-------NDYEYRVSDYT-LEDLINQL--NDVDAVV 67 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-CC----------------CCEEEECCCC-HHHHHHHT--TTCSEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCC-CCccc----C-------CceEEEEcccc-HHHHHHhh--cCCCEEE
Confidence 799999999999999999999999999999986 22211 1 26889999999 99999999 5899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
|+||..... ++...+++|+.++.++++++++.++++|||+||.++|+.....+++|+.+..|.+.|+.+|.++|.+
T Consensus 68 h~a~~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 143 (311)
T 3m2p_A 68 HLAATRGSQ----GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEKELPLPDLMYGVSKLACEHI 143 (311)
T ss_dssp ECCCCCCSS----SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTTSCCCCSSHHHHHHHHHHHH
T ss_pred EccccCCCC----ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCCCCCCCchhHHHHHHHHHH
Confidence 999976543 5667889999999999999999999999999999999988878899999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHH
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~ 310 (413)
++.++.+.|++++++||+.+|||+..+. .+++.++..+..+.+ +.++| ++++.++|+|++
T Consensus 144 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~-------------~~~~~~~~~~~~~~~-~~~~g------~~~~~~~~v~v~ 203 (311)
T 3m2p_A 144 GNIYSRKKGLCIKNLRFAHLYGFNEKNN-------------YMINRFFRQAFHGEQ-LTLHA------NSVAKREFLYAK 203 (311)
T ss_dssp HHHHHHHSCCEEEEEEECEEECSCC--C-------------CHHHHHHHHHHTCCC-EEESS------BCCCCEEEEEHH
T ss_pred HHHHHHHcCCCEEEEeeCceeCcCCCCC-------------CHHHHHHHHHHcCCC-eEEec------CCCeEEceEEHH
Confidence 9999998999999999999999975421 467777777777776 77776 788999999999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCC-CCCCccccccCHHHHHHhcCcccccc
Q 015080 311 DLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR-RPGDYAEVYSDPTKIRLELNWTAKYT 389 (413)
Q Consensus 311 Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~p~~~ 389 (413)
|+|++++.+++++.. +++||+++++++|+.|+++.+.+.+|.+.++...+. .........+|++|++++|||+|++
T Consensus 204 Dva~a~~~~~~~~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~- 280 (311)
T 3m2p_A 204 DAAKSVIYALKQEKV--SGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDY- 280 (311)
T ss_dssp HHHHHHHHHTTCTTC--CEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSSBCCSCCCBCBCCHHHHHHSCCCCSC-
T ss_pred HHHHHHHHHHhcCCC--CCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCCCCCCcCceecCHHHHHHHhCCCccc-
Confidence 999999999987653 379999999999999999999999999988887776 5566677889999999999999999
Q ss_pred cHHHHHHHHHHHHHhccC
Q 015080 390 NLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 390 ~~~e~l~~~~~~~~~~~~ 407 (413)
+++++|+++++|++++.+
T Consensus 281 ~~~~~l~~~~~~~~~~~~ 298 (311)
T 3m2p_A 281 NFATAVEEIHLLMRGLDD 298 (311)
T ss_dssp CHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHHHhccc
Confidence 899999999999987643
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-47 Score=360.90 Aligned_cols=301 Identities=28% Similarity=0.386 Sum_probs=252.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++|+++|+++|++|++++|......... ..++.++.+|++|.+ +.++++ + |+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~~~~~~~Dl~d~~-~~~~~~--~-d~vi 67 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV---------NPSAELHVRDLKDYS-WGAGIK--G-DVVF 67 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS---------CTTSEEECCCTTSTT-TTTTCC--C-SEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc---------CCCceEEECccccHH-HHhhcC--C-CEEE
Confidence 57999999999999999999999999999988655433221 257899999999998 887773 4 9999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
||||.........++...+++|+.++.++++++++.++++|||+||.++|+.....+++|+.+..|.++|+.||+++|.+
T Consensus 68 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~ 147 (312)
T 3ko8_A 68 HFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVM 147 (312)
T ss_dssp ECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred ECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Confidence 99997665556778889999999999999999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHH
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~ 310 (413)
++.++.+.|++++++||+.+|||+... .++..++..+..+...+.+.+ ++.+.++|+|++
T Consensus 148 ~~~~~~~~g~~~~~lrp~~v~g~~~~~--------------~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~i~v~ 207 (312)
T 3ko8_A 148 CATYARLFGVRCLAVRYANVVGPRLRH--------------GVIYDFIMKLRRNPNVLEVLG------DGTQRKSYLYVR 207 (312)
T ss_dssp HHHHHHHHCCEEEEEEECEEECTTCCS--------------SHHHHHHHHHHHCTTEEEEC----------CEECEEEHH
T ss_pred HHHHHHHhCCCEEEEeeccccCcCCCC--------------ChHHHHHHHHHhCCCCeEEcC------CCCeEEeeEEHH
Confidence 999999889999999999999997431 345555555555433366766 788999999999
Q ss_pred HHHHHHHHHHHh---cCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCC------CCCCccccccCHHHHHHh
Q 015080 311 DLVDAHVKALER---AQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR------RPGDYAEVYSDPTKIRLE 381 (413)
Q Consensus 311 Dva~a~~~~~~~---~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~------~~~~~~~~~~d~~k~~~~ 381 (413)
|+|++++.++++ ... .+++||+++++++|+.|+++.+.+.+|.+.++...+. .........+|++|++++
T Consensus 208 Dva~a~~~~~~~~~~~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 286 (312)
T 3ko8_A 208 DAVEATLAAWKKFEEMDA-PFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKL 286 (312)
T ss_dssp HHHHHHHHHHHHHHHSCC-SEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC----------CCCSEECBCCHHHHHH
T ss_pred HHHHHHHHHHHhccccCC-CCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccCCCCCccccccCHHHHHHH
Confidence 999999999997 222 3479999999999999999999999999888776554 233445678999999999
Q ss_pred cCcccccccHHHHHHHHHHHHHhcc
Q 015080 382 LNWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 382 lG~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
|||+|++ +++++|+++++|++++.
T Consensus 287 lG~~p~~-~~~~~l~~~~~~~~~~~ 310 (312)
T 3ko8_A 287 TGWRPTM-TSAEAVKKTAEDLAKEL 310 (312)
T ss_dssp HCCCCSS-CHHHHHHHHHHHHHHHH
T ss_pred hCCCCCC-CHHHHHHHHHHHHHhhh
Confidence 9999998 89999999999999864
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=358.04 Aligned_cols=301 Identities=22% Similarity=0.311 Sum_probs=254.0
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
++|+|||||||||||++++++|+++|++|++++|.... .. + ++.++.+|++|.+++.++++..++|+
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~----l--------~~~~~~~Dl~d~~~~~~~~~~~~~d~ 77 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL----P--------NVEMISLDIMDSQRVKKVISDIKPDY 77 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC----T--------TEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc----c--------eeeEEECCCCCHHHHHHHHHhcCCCE
Confidence 34899999999999999999999999999999986543 21 1 57899999999999999997656999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccceecCCC--CCCCCCCCCCCCCCChhHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-GVDTLIYSSTCATYGEP--EKMPITEETPQAPINPYGKAKK 225 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~iV~~SS~~~~~~~--~~~~~~e~~~~~~~~~Y~~sK~ 225 (413)
||||||........+++...+++|+.++.++++++.+. ++++||++||.++|+.. ...+++|+.+..|.++|+.||+
T Consensus 78 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~~~~~~~Y~~sK~ 157 (321)
T 2pk3_A 78 IFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKA 157 (321)
T ss_dssp EEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSCCBCCSHHHHHHH
T ss_pred EEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCCCCCCCccHHHHH
Confidence 99999986544445678889999999999999999876 58899999999999876 5668899999889999999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhc---c--ccceeEecccccCCCC
Q 015080 226 MAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARG---I--IAGLKVKGTDYSTADG 300 (413)
Q Consensus 226 ~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~i~~~g~~~~~~~~ 300 (413)
++|.+++.++.++|++++++||+.+|||+.... .+++.++..+.. + .+ +.+.+ ++
T Consensus 158 ~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~-------------~~~~~~~~~~~~~~~g~~~~-~~~~~------~~ 217 (321)
T 2pk3_A 158 SVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLG-------------FVTQDFAKQIVDIEMEKQEP-IIKVG------NL 217 (321)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECEEECTTCCTT-------------SHHHHHHHHHHHHHTTSSCS-EEEES------CS
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCC-------------chHHHHHHHHHHHhcCCCCC-eEEeC------CC
Confidence 999999999888899999999999999975321 345555555444 4 33 55666 77
Q ss_pred ceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecC--CCCCCccccccCHHHH
Q 015080 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEP--RRPGDYAEVYSDPTKI 378 (413)
Q Consensus 301 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~--~~~~~~~~~~~d~~k~ 378 (413)
...++|+|++|+|++++.++..+.. +++||+++++++|+.|+++.+.+.+|.+.++...| ..........+|++|+
T Consensus 218 ~~~~~~v~v~Dva~a~~~~~~~~~~--g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~ 295 (321)
T 2pk3_A 218 EAVRDFTDVRDIVQAYWLLSQYGKT--GDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRL 295 (321)
T ss_dssp SCEEEEEEHHHHHHHHHHHHHHCCT--TCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGGCCSSCCSBCCBCCHHH
T ss_pred CcEEeeEEHHHHHHHHHHHHhCCCC--CCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeeccccCCCcccchhccCHHHH
Confidence 8889999999999999999987643 37999999999999999999999999988776665 3333445678999999
Q ss_pred HHhcCcccccccHHHHHHHHHHHHHhc
Q 015080 379 RLELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 379 ~~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
+++|||+|++ +++++|+++++||+++
T Consensus 296 ~~~lG~~p~~-~~~e~l~~~~~~~~~~ 321 (321)
T 2pk3_A 296 KDSTGWKPRI-PLEKSLFEILQSYRQA 321 (321)
T ss_dssp HHHHCCCCCS-CHHHHHHHHHHHHHTC
T ss_pred HHHcCCCcCC-CHHHHHHHHHHHHhcC
Confidence 9999999998 8999999999999864
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=361.77 Aligned_cols=318 Identities=25% Similarity=0.356 Sum_probs=258.0
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCC--CCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE--PGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
||+|||||||||||++++++|+++|++|++++|.........+.+.+.... ..++.++.+|++|.+++.+++ .++|
T Consensus 27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d 104 (352)
T 1sb8_A 27 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNAC--AGVD 104 (352)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHH--TTCS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHh--cCCC
Confidence 389999999999999999999999999999998654332222222221110 147899999999999999999 5899
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHH
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMA 227 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~ 227 (413)
+||||||.........+++..+++|+.++.++++++++.++++||++||.++|+.....+++|+.+..|.++|+.+|+++
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~ 184 (352)
T 1sb8_A 105 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVN 184 (352)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHHH
T ss_pred EEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCCCCCCCCCCCCCChhHHHHHHH
Confidence 99999997644334456778899999999999999999999999999999999987777899999989999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecc
Q 015080 228 EDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307 (413)
Q Consensus 228 e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i 307 (413)
|.+++.++.+.|+++++|||+.||||...... ....+++.++..+..+.+ +.+.| ++++.++|+
T Consensus 185 e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~g------~g~~~~~~i 248 (352)
T 1sb8_A 185 ELYADVFSRCYGFSTIGLRYFNVFGRRQDPNG---------AYAAVIPKWTSSMIQGDD-VYING------DGETSRDFC 248 (352)
T ss_dssp HHHHHHHHHHHCCCCEEEEECCEECTTCCCCS---------TTCCHHHHHHHHHHHTCC-CEEES------SSCCEECCE
T ss_pred HHHHHHHHHHcCCCEEEEEECceeCcCCCCCc---------chhhHHHHHHHHHHCCCC-cEEeC------CCCceEeeE
Confidence 99999998888999999999999999753210 001455666666666665 66666 788899999
Q ss_pred cHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHc---CCCcee--EecCCCCCCccccccCHHHHHHhc
Q 015080 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKAT---SANIKV--IYEPRRPGDYAEVYSDPTKIRLEL 382 (413)
Q Consensus 308 ~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~---g~~~~~--~~~~~~~~~~~~~~~d~~k~~~~l 382 (413)
|++|+|++++.++.......+++||+++++++|+.|+++.+.+.+ |.+.+. .+.+..........+|++|++++|
T Consensus 249 ~v~Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 328 (352)
T 1sb8_A 249 YIENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLL 328 (352)
T ss_dssp EHHHHHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHT
T ss_pred EHHHHHHHHHHHHhccccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCceecCCCccchhhccCCHHHHHHHh
Confidence 999999999999875222234799999999999999999999999 977652 233333334456778999999999
Q ss_pred CcccccccHHHHHHHHHHHHHhcc
Q 015080 383 NWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 383 G~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
||+|++ +++|+|+++++||+++.
T Consensus 329 G~~p~~-~~~e~l~~~~~~~~~~~ 351 (352)
T 1sb8_A 329 GYAPKY-DVSAGVALAMPWYIMFL 351 (352)
T ss_dssp CCCCCC-CHHHHHHHHHHHHHHHT
T ss_pred CCCCCC-CHHHHHHHHHHHHHHhc
Confidence 999998 89999999999998763
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=354.71 Aligned_cols=303 Identities=33% Similarity=0.490 Sum_probs=253.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+||||++++++|+++|++|++++|...... ..+ ..++.++.+|++|++++.+++++.++|+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~---~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 71 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKR---ENV------PKGVPFFRVDLRDKEGVERAFREFRPTHVS 71 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCG---GGS------CTTCCEECCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCch---hhc------ccCeEEEECCCCCHHHHHHHHHhcCCCEEE
Confidence 47999999999999999999999999999987433221 111 135778999999999999998655899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc-eecCC-CCCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTC-ATYGE-PEKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~-~~~~~-~~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
|+||.........++...+++|+.++.++++++++.++++||++||. ++|+. ....+++|+.+..|.++|+.||+++|
T Consensus 72 ~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~~~~~~~~~Y~~sK~~~e 151 (311)
T 2p5y_A 72 HQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFE 151 (311)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTTSCCCCCSHHHHHHHHHH
T ss_pred ECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCCCCCCCCChHHHHHHHHH
Confidence 99997644334456778899999999999999999888999999998 89986 45557888888888999999999999
Q ss_pred HHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe-----cccccCCCCcee
Q 015080 229 DIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK-----GTDYSTADGTCV 303 (413)
Q Consensus 229 ~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----g~~~~~~~~~~~ 303 (413)
.+++.+++++|++++++||+.||||+..... .+.+++.++..+..+.+ +.+. | ++.+.
T Consensus 152 ~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~g~~~ 214 (311)
T 2p5y_A 152 HYLSVYGQSYGLKWVSLRYGNVYGPRQDPHG----------EAGVVAIFAERVLKGLP-VTLYARKTPG------DEGCV 214 (311)
T ss_dssp HHHHHHHHHHCCCEEEEEECEEECTTCCSSS----------TTHHHHHHHHHHHHTCC-EEEECSSSTT------SCCCE
T ss_pred HHHHHHHHHcCCCEEEEeeccccCcCCCCCC----------cCcHHHHHHHHHHcCCC-cEEEecccCC------CCCeE
Confidence 9999998888999999999999999753210 01456666666666655 5555 5 77888
Q ss_pred eecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcC
Q 015080 304 RDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELN 383 (413)
Q Consensus 304 ~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 383 (413)
++|+|++|+|++++.+++.+ +++||+++++++|+.|+++.+.+.+|.+.++...+....+.....+|++|+++ ||
T Consensus 215 ~~~i~v~Dva~a~~~~~~~~----~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~-lg 289 (311)
T 2p5y_A 215 RDYVYVGDVAEAHALALFSL----EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSPLKLMA-HG 289 (311)
T ss_dssp ECEEEHHHHHHHHHHHHHHC----CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECCCTTCCSBCCBCCHHHHT-TT
T ss_pred EeeEEHHHHHHHHHHHHhCC----CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCCCccchhhccCCHHHHHH-CC
Confidence 99999999999999999874 37999999999999999999999999988877766655555678899999998 99
Q ss_pred cccccccHHHHHHHHHHHHHhc
Q 015080 384 WTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 384 ~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
|+|++ +++|+|+++++|++++
T Consensus 290 ~~p~~-~~~~~l~~~~~~~~~~ 310 (311)
T 2p5y_A 290 WRPKV-GFQEGIRLTVDHFRGA 310 (311)
T ss_dssp CCCSS-CHHHHHHHHHHHHHTC
T ss_pred CCCCC-CHHHHHHHHHHHHHhh
Confidence 99998 9999999999999864
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-46 Score=359.06 Aligned_cols=317 Identities=23% Similarity=0.376 Sum_probs=252.7
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCch-hhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIG-AVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
||+|||||||||||++++++|++.|++|++++|..++... ..+.+. . ..++.++.+|++|.+++.++++..++|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~---~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 76 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS---S-LGNFEFVHGDIRNKNDVTRLITKYMPDS 76 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH---T-TCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhc---c-CCceEEEEcCCCCHHHHHHHHhccCCCE
Confidence 6899999999999999999999999999999986543321 222222 1 1468999999999999999996555999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccceecCCCCCC----------------CCCCC
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSSTCATYGEPEKM----------------PITEE 211 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS~~~~~~~~~~----------------~~~e~ 211 (413)
||||||.........+++..+++|+.++.++++++++.+++ +||++||.++|+..... +++|+
T Consensus 77 vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~ 156 (347)
T 1orr_A 77 CFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDES 156 (347)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTT
T ss_pred EEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCcccc
Confidence 99999976443334567889999999999999999998875 99999999999865432 25677
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc----c
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA----G 287 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 287 (413)
.+..|.++|+.||+++|.+++.++.++|+++++|||+.||||...... . ..+++.++..+..+.. .
T Consensus 157 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~ 226 (347)
T 1orr_A 157 TQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATY---D-------QGWVGWFCQKAVEIKNGINKP 226 (347)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBT---T-------BCHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCC---c-------CcHHHHHHHHHHhCcccCCCC
Confidence 777788999999999999999998888999999999999999743210 0 1244444444433331 2
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCC--cccHHHHHHHHHHHcCCCceeEecCCCC
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGK--GRSVKEFVEACKKATSANIKVIYEPRRP 365 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~--~~s~~e~~~~i~~~~g~~~~~~~~~~~~ 365 (413)
+.+.| ++++.++|+|++|+|++++.+++......+++||+++++ ++|+.|+++.+.+.+|.+.++...|...
T Consensus 227 ~~~~g------~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~ 300 (347)
T 1orr_A 227 FTISG------NGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRE 300 (347)
T ss_dssp EEEES------SSCCEEECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCCS
T ss_pred eEEec------CCcceEeeEEHHHHHHHHHHHHhccccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCCCCC
Confidence 66666 788999999999999999999984211123699999887 4999999999999999988877776555
Q ss_pred CCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccC
Q 015080 366 GDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 366 ~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 407 (413)
.......+|++|++++|||+|++ +++++|+++++|++++..
T Consensus 301 ~~~~~~~~d~~k~~~~lG~~p~~-~~~e~l~~~~~~~~~~~~ 341 (347)
T 1orr_A 301 SDQRVFVADIKKITNAIDWSPKV-SAKDGVQKMYDWTSSILE 341 (347)
T ss_dssp SCCSEECBCCHHHHHHHCCCCCS-CHHHHHHHHHHHHHHC--
T ss_pred CCcceeecCHHHHHHHHCCCccC-CHHHHHHHHHHHHHHHHH
Confidence 55556788999999999999988 899999999999998854
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=355.08 Aligned_cols=301 Identities=20% Similarity=0.196 Sum_probs=254.0
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
||+|||||||||||++|+++|+++|+ + .... ...+.++.+|++|++++.++++..++|+|
T Consensus 6 ~~~vlVtGatG~iG~~l~~~L~~~g~------~--~~~~------------~~~~~~~~~D~~d~~~~~~~~~~~~~d~V 65 (319)
T 4b8w_A 6 SMRILVTGGSGLVGKAIQKVVADGAG------L--PGED------------WVFVSSKDADLTDTAQTRALFEKVQPTHV 65 (319)
T ss_dssp CCEEEEETCSSHHHHHHHHHHHTTTC------C--TTCE------------EEECCTTTCCTTSHHHHHHHHHHSCCSEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHhcCC------c--cccc------------ccccCceecccCCHHHHHHHHhhcCCCEE
Confidence 48999999999999999999999998 1 1000 12344557999999999999977779999
Q ss_pred EEcCcccCc-cCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC----CCCCCC-hhHHH
Q 015080 150 MHFAAVAYV-GESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET----PQAPIN-PYGKA 223 (413)
Q Consensus 150 i~~Ag~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~----~~~~~~-~Y~~s 223 (413)
||+||.... .....++...+++|+.++.++++++++.++++|||+||.++|+.....+++|+. +..|.+ +|+.+
T Consensus 66 ih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~s 145 (319)
T 4b8w_A 66 IHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYA 145 (319)
T ss_dssp EECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGGGGBSCCCSSSHHHHHH
T ss_pred EECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCccccccccCCCCCCcchHHHH
Confidence 999997542 234567888999999999999999999999999999999999988888899987 566665 69999
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHH----HhccccceeEecccccCCC
Q 015080 224 KKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDA----ARGIIAGLKVKGTDYSTAD 299 (413)
Q Consensus 224 K~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~g~~~~~~~ 299 (413)
|.++|.+++.++++.|++++++||+.||||+...... .+.+++.++.. +..+.+ +.++| +
T Consensus 146 K~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~------~ 209 (319)
T 4b8w_A 146 KRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIE---------DGHVLPGLIHKVHLAKSSGSA-LTVWG------T 209 (319)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTT---------TSCHHHHHHHHHHHHHHHTCC-EEEES------C
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCc---------cccccHHHHHHHHHHhccCCc-eEEeC------C
Confidence 9999999999998899999999999999997543211 12455655555 666666 77777 8
Q ss_pred CceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHH
Q 015080 300 GTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIR 379 (413)
Q Consensus 300 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~ 379 (413)
+++.++|+|++|+|++++.++++.....+++||+++++++|+.|+++.+.+.+|.+.++...+..........+|++|++
T Consensus 210 g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~ 289 (319)
T 4b8w_A 210 GNPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLR 289 (319)
T ss_dssp SCCEECEEEHHHHHHHHHHHHHHCCCSSCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTSCCCCSCCCBCCHHHH
T ss_pred CCeeEEEEeHHHHHHHHHHHHhccccCCceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCCCcCcccccCCHHHHH
Confidence 89999999999999999999998655445799999999999999999999999999888887766666667789999999
Q ss_pred HhcCcccccccHHHHHHHHHHHHHhccC
Q 015080 380 LELNWTAKYTNLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 380 ~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 407 (413)
++|||.|.+ +++++|+++++||+++.+
T Consensus 290 ~~lg~~p~~-~~~~~l~~~~~~~~~~~~ 316 (319)
T 4b8w_A 290 TYLPDFRFT-PFKQAVKETCAWFTDNYE 316 (319)
T ss_dssp HHCTTCCCC-CHHHHHHHHHHHHHHSCS
T ss_pred HhcCCCCCC-CHHHHHHHHHHHHHHHHh
Confidence 999999998 899999999999999865
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-46 Score=354.28 Aligned_cols=310 Identities=25% Similarity=0.356 Sum_probs=255.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC---C---CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD---S---YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSEN 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~---G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 144 (413)
|+|||||||||||++++++|+++ | ++|++++|...... .+.+..+.. ..++.++.+|++|++++.+++ .
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~--~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~--~ 75 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGN--RANLAPVDA-DPRLRFVHGDIRDAGLLAREL--R 75 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCC--GGGGGGGTT-CTTEEEEECCTTCHHHHHHHT--T
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCc--hhhhhhccc-CCCeEEEEcCCCCHHHHHHHh--c
Confidence 47999999999999999999997 8 99999998643211 111222211 257899999999999999999 7
Q ss_pred CCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHH
Q 015080 145 AFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAK 224 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK 224 (413)
++|+||||||......+..+++..+++|+.++.++++++.+.++++||++||.++||.....+++|+.+..|.++|+.||
T Consensus 76 ~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK 155 (337)
T 1r6d_A 76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASK 155 (337)
T ss_dssp TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTSCCCCCSHHHHHH
T ss_pred CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCCCCCCCCCchHHHH
Confidence 89999999997654333456778899999999999999999998999999999999877666889998888999999999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceee
Q 015080 225 KMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304 (413)
Q Consensus 225 ~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 304 (413)
+++|.+++.++.++|++++++||+.+|||..... .+++.++..+..+.+ +.+++ ++.+.+
T Consensus 156 ~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~------~~~~~~ 215 (337)
T 1r6d_A 156 AGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPE-------------KLIPLFVTNLLDGGT-LPLYG------DGANVR 215 (337)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT-------------SHHHHHHHHHHTTCC-EEEET------TSCCEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCCC-------------ChHHHHHHHHhcCCC-cEEeC------CCCeeE
Confidence 9999999999888899999999999999974321 456666666666655 66666 788899
Q ss_pred ecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCce-eEecCCCCCCccccccCHHHHHHhcC
Q 015080 305 DYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIK-VIYEPRRPGDYAEVYSDPTKIRLELN 383 (413)
Q Consensus 305 ~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~~~lG 383 (413)
+|+|++|+|++++.+++.+.. +++||+++++++|+.|+++.+.+.+|.+.+ +...+..........+|++|++++||
T Consensus 216 ~~i~v~Dva~a~~~~~~~~~~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 293 (337)
T 1r6d_A 216 EWVHTDDHCRGIALVLAGGRA--GEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELG 293 (337)
T ss_dssp EEEEHHHHHHHHHHHHHHCCT--TCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHC
T ss_pred eeEeHHHHHHHHHHHHhCCCC--CCEEEeCCCCCccHHHHHHHHHHHhCCCcccceecCCCCCCcceeecCHHHHHHHcC
Confidence 999999999999999987543 379999999999999999999999998754 33333333333445689999999999
Q ss_pred cccccccHHHHHHHHHHHHHhccCC
Q 015080 384 WTAKYTNLQESLEIAWRWQKSHRGG 408 (413)
Q Consensus 384 ~~p~~~~~~e~l~~~~~~~~~~~~~ 408 (413)
|+|++ +++++|+++++||+++.++
T Consensus 294 ~~p~~-~~~e~l~~~~~~~~~~~~~ 317 (337)
T 1r6d_A 294 YRPQV-SFADGLARTVRWYRENRGW 317 (337)
T ss_dssp CCCCS-CHHHHHHHHHHHHHHCHHH
T ss_pred CCCCC-CHHHHHHHHHHHHHhchhc
Confidence 99998 8999999999999887543
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=352.82 Aligned_cols=309 Identities=26% Similarity=0.382 Sum_probs=251.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|||||||||||++++++|+++| ++|++++|...... .+.+.++.. ..++.++.+|++|.+++.+++ .++|+
T Consensus 4 m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~--~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~--~~~d~ 78 (336)
T 2hun_A 4 MKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSN--PANLKDLED-DPRYTFVKGDVADYELVKELV--RKVDG 78 (336)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC--GGGGTTTTT-CTTEEEEECCTTCHHHHHHHH--HTCSE
T ss_pred CeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCc--hhHHhhhcc-CCceEEEEcCCCCHHHHHHHh--hCCCE
Confidence 679999999999999999999996 89999998642211 111222211 357899999999999999998 68999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC-CEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV-DTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMA 227 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~ 227 (413)
||||||.........+++..+++|+.++.++++++.+.+. ++||++||.++||.....+++|+.+..|.++|+.||+++
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~ 158 (336)
T 2hun_A 79 VVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRLMPSSPYSATKAAS 158 (336)
T ss_dssp EEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTBCCCCCSHHHHHHHHH
T ss_pred EEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCCCCCCCCccHHHHHHH
Confidence 9999997653333456778899999999999999998864 799999999999987666889998888999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecc
Q 015080 228 EDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307 (413)
Q Consensus 228 e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i 307 (413)
|.+++.++.++|++++++||+.||||..... .+++.++..+..+.+ +++.+ ++.+.++|+
T Consensus 159 e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~i 218 (336)
T 2hun_A 159 DMLVLGWTRTYNLNASITRCTNNYGPYQFPE-------------KLIPKTIIRASLGLK-IPIYG------TGKNVRDWL 218 (336)
T ss_dssp HHHHHHHHHHTTCEEEEEEECEEESTTCCTT-------------SHHHHHHHHHHTTCC-EEEET------C---CEEEE
T ss_pred HHHHHHHHHHhCCCEEEEeeeeeeCcCCCcC-------------chHHHHHHHHHcCCC-ceEeC------CCCceeeeE
Confidence 9999999988999999999999999974311 456666666666655 67766 788889999
Q ss_pred cHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCce-eEecCCCCCCccccccCHHHHHHhcCccc
Q 015080 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIK-VIYEPRRPGDYAEVYSDPTKIRLELNWTA 386 (413)
Q Consensus 308 ~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 386 (413)
|++|+|++++.+++.... +++||+++++++|+.|+++.+.+.+|.+.+ +...+..........+|++|++++|||+|
T Consensus 219 ~v~Dva~~~~~~~~~~~~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 296 (336)
T 2hun_A 219 YVEDHVRAIELVLLKGES--REIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLDSWKITRDLKWRP 296 (336)
T ss_dssp EHHHHHHHHHHHHHHCCT--TCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEECCCTTCCCCCCBCCHHHHHHHCCCC
T ss_pred EHHHHHHHHHHHHhCCCC--CCEEEeCCCCcccHHHHHHHHHHHhCCCcccccccCCCCCchhhhcCCHHHHHHHhCCCC
Confidence 999999999999987553 379999999999999999999999998754 33333333333456789999999999999
Q ss_pred ccccHHHHHHHHHHHHHhccC
Q 015080 387 KYTNLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 387 ~~~~~~e~l~~~~~~~~~~~~ 407 (413)
++ +++++|+++++||+++.+
T Consensus 297 ~~-~~~~~l~~~~~~~~~~~~ 316 (336)
T 2hun_A 297 KY-TFDEGIKKTIDWYLKNEW 316 (336)
T ss_dssp SS-CHHHHHHHHHHHHHHTHH
T ss_pred CC-CHHHHHHHHHHHHHhCcc
Confidence 98 899999999999987643
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-47 Score=368.22 Aligned_cols=314 Identities=19% Similarity=0.299 Sum_probs=257.2
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCC-CHHHHHHHhhcCCC
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG-DAKAVNKFFSENAF 146 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-d~~~~~~~~~~~~~ 146 (413)
.||+|||||||||||++|+++|+++ |++|++++|...+...... ..+++++.+|++ |.+.+.+++ .++
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~--------~~~v~~~~~Dl~~d~~~~~~~~--~~~ 92 (372)
T 3slg_A 23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVK--------HERMHFFEGDITINKEWVEYHV--KKC 92 (372)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGG--------STTEEEEECCTTTCHHHHHHHH--HHC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhcc--------CCCeEEEeCccCCCHHHHHHHh--ccC
Confidence 3489999999999999999999998 9999999986654332211 157999999999 999999999 479
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC-------CCCCh
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ-------APINP 219 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~-------~~~~~ 219 (413)
|+|||+||...+.....++...+++|+.++.++++++++.+ ++|||+||.++||.....+++|+.+. .|.++
T Consensus 93 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~~~ 171 (372)
T 3slg_A 93 DVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWI 171 (372)
T ss_dssp SEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTTHH
T ss_pred CEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCcHHHhCCCCCCCCCccccccccCCCCCCCCc
Confidence 99999999876555556788899999999999999999998 89999999999998877778887754 56779
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCC
Q 015080 220 YGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTAD 299 (413)
Q Consensus 220 Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 299 (413)
|+.+|+++|.+++.++++ |++++++||+.||||+..+..++.. ..+.+++.++..+..+.+ +.+.+ +
T Consensus 172 Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~------~ 238 (372)
T 3slg_A 172 YACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKE-----GSSRVVTQFLGHIVRGEN-ISLVD------G 238 (372)
T ss_dssp HHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBS-----CSCHHHHHHHHHHHHTCC-EEEGG------G
T ss_pred HHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCccccccccc-----ccchHHHHHHHHHHcCCC-cEEeC------C
Confidence 999999999999999887 9999999999999998654322111 112677888888877776 77777 7
Q ss_pred CceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCC-CcccHHHHHHHHHHHcCCCceeEecCC--------------
Q 015080 300 GTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTG-KGRSVKEFVEACKKATSANIKVIYEPR-------------- 363 (413)
Q Consensus 300 ~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~-~~~s~~e~~~~i~~~~g~~~~~~~~~~-------------- 363 (413)
+++.++|+|++|+|++++.+++.+.. ..+++||++++ +++|+.|+++.+.+.+|.+.++...+.
T Consensus 239 g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 318 (372)
T 3slg_A 239 GSQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYYG 318 (372)
T ss_dssp GCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTCCEEEC-------
T ss_pred CceEEEEEEHHHHHHHHHHHHhcccCcCCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccceeeecccccccc
Confidence 88999999999999999999997641 23479999994 899999999999999997654322111
Q ss_pred -CCCCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccC
Q 015080 364 -RPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 364 -~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 407 (413)
.........+|++|++++|||+|++ +++++|+++++||+++.+
T Consensus 319 ~~~~~~~~~~~d~~k~~~~lG~~p~~-~l~e~l~~~~~~~~~~~~ 362 (372)
T 3slg_A 319 NGYQDVQNRVPKIENTMQELGWAPQF-TFDDALRQIFEAYRGHVA 362 (372)
T ss_dssp ------CCCCBCCHHHHHHHTCCCCC-CHHHHHHHHHHHHTTCHH
T ss_pred CCccccceeecCHHHHHHHcCCCCCC-CHHHHHHHHHHHHHHHHH
Confidence 0123345678999999999999999 899999999999987743
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-46 Score=357.65 Aligned_cols=309 Identities=20% Similarity=0.270 Sum_probs=255.1
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
+..+ |+|||||||||||++|+++|+++|++|++++|.... .++.++.+|++|.+++.+++ .+
T Consensus 16 ~~~~-~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~---------------~~~~~~~~Dl~d~~~~~~~~--~~ 77 (347)
T 4id9_A 16 PRGS-HMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG---------------TGGEEVVGSLEDGQALSDAI--MG 77 (347)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS---------------SCCSEEESCTTCHHHHHHHH--TT
T ss_pred ccCC-CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC---------------CCccEEecCcCCHHHHHHHH--hC
Confidence 3445 899999999999999999999999999999986542 36788999999999999999 68
Q ss_pred CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCC--CCCCCCCCCCCCCCCChhHHH
Q 015080 146 FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGE--PEKMPITEETPQAPINPYGKA 223 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~--~~~~~~~e~~~~~~~~~Y~~s 223 (413)
+|+|||+||...... ...+..+++|+.++.++++++++.++++|||+||.++|+. ....+++|+.+..|.+.|+.+
T Consensus 78 ~d~vih~A~~~~~~~--~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~Y~~s 155 (347)
T 4id9_A 78 VSAVLHLGAFMSWAP--ADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTEDHPLCPNSPYGLT 155 (347)
T ss_dssp CSEEEECCCCCCSSG--GGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTTSCCCCCSHHHHH
T ss_pred CCEEEECCcccCcch--hhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCCCCCCCCChHHHH
Confidence 999999999764432 2347899999999999999999999999999999999998 566789999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeeccee-------------cCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 224 KKMAEDIILDFSKNSDMAVMILRYFNVI-------------GSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 224 K~~~e~~~~~~~~~~gi~~~~lrp~~v~-------------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
|.++|.+++.++++.|+++++|||+.+| ||+...... . .......+.++..++..+..+.+ +.+
T Consensus 156 K~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~-~~~ 232 (347)
T 4id9_A 156 KLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPR-I-HQQQNFGNAAIAELLQSRDIGEP-SHI 232 (347)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHH-H-HHHHHHTCHHHHHHHHHHCCSSC-CEE
T ss_pred HHHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccc-c-ccccccchhHHHHHHHHHHcCCC-eEE
Confidence 9999999999999899999999999999 664210000 0 00000002566777777777766 677
Q ss_pred ecccccCCCCceeeec----ccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCC
Q 015080 291 KGTDYSTADGTCVRDY----IDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPG 366 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~----i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~ 366 (413)
.| ++.+.++| +|++|+|++++.+++.+... +++||+++++++|+.|+++.+.+.+|.+.++...|....
T Consensus 233 ~g------~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~ 305 (347)
T 4id9_A 233 LA------RNENGRPFRMHITDTRDMVAGILLALDHPEAA-GGTFNLGADEPADFAALLPKIAALTGLPIVTVDFPGDGV 305 (347)
T ss_dssp EE------ECTTCCBCEECEEEHHHHHHHHHHHHHCGGGT-TEEEEESCSSCEEHHHHHHHHHHHHCCCEEEEECSSCCC
T ss_pred eC------CCCcccCCccCcEeHHHHHHHHHHHhcCcccC-CCeEEECCCCcccHHHHHHHHHHHhCCCCceeeCCCccc
Confidence 76 77788899 99999999999999976432 379999999999999999999999999988876665443
Q ss_pred CccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccCC
Q 015080 367 DYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGG 408 (413)
Q Consensus 367 ~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~ 408 (413)
...+|++|++++|||+|++ +++++|+++++||+++...
T Consensus 306 ---~~~~d~~k~~~~lG~~p~~-~~~~~l~~~~~~~~~~~~~ 343 (347)
T 4id9_A 306 ---YYHTSNERIRNTLGFEAEW-TMDRMLEEAATARRQRLAK 343 (347)
T ss_dssp ---BCCBCCHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHCC-
T ss_pred ---ccccCHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhhhhc
Confidence 6788999999999999998 8999999999999987643
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=355.56 Aligned_cols=309 Identities=24% Similarity=0.335 Sum_probs=252.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHH--CCCEEEEEecCCCCCch------hhhhhhhhcCCCCceEEEEccCCCHHHHH
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLK--DSYRVTIVDNLSRGNIG------AVKVLQELFPEPGRLQFIYADLGDAKAVN 138 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~--~G~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 138 (413)
+.+ |+|||||||||||++|+++|++ .|++|++++|....... ........ .+.++.++.+|++|++++.
T Consensus 8 ~~~-~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~ 84 (362)
T 3sxp_A 8 LEN-QTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNL--IGFKGEVIAADINNPLDLR 84 (362)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGG--TTCCSEEEECCTTCHHHHH
T ss_pred cCC-CEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhc--cccCceEEECCCCCHHHHH
Confidence 345 8999999999999999999999 99999999986542110 00011111 1346899999999999999
Q ss_pred HH-hhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 139 KF-FSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 139 ~~-~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
++ . .++|+||||||+... ...+++..+++|+.++.++++++++.+++ |||+||.++||.... +++|+.+..|.
T Consensus 85 ~~~~--~~~D~vih~A~~~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS~~vyg~~~~-~~~E~~~~~p~ 158 (362)
T 3sxp_A 85 RLEK--LHFDYLFHQAAVSDT--TMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASSAGVYGNTKA-PNVVGKNESPE 158 (362)
T ss_dssp HHTT--SCCSEEEECCCCCGG--GCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEEGGGGCSCCS-SBCTTSCCCCS
T ss_pred Hhhc--cCCCEEEECCccCCc--cccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCcHHHhCCCCC-CCCCCCCCCCC
Confidence 98 4 789999999996543 45678899999999999999999998875 999999999998776 89999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccC
Q 015080 218 NPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST 297 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 297 (413)
++|+.||+++|.+++.++.+ +++++|||+.||||+.... ...+.+++.++..+..+.+ +.+.+
T Consensus 159 ~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~----- 221 (362)
T 3sxp_A 159 NVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYK---------EKTASMVLQLALGAMAFKE-VKLFE----- 221 (362)
T ss_dssp SHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGG---------GGGSCHHHHHHHHHHTTSE-EECSG-----
T ss_pred ChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCC---------CcchhHHHHHHHHHHhCCC-eEEEC-----
Confidence 99999999999999998776 8999999999999975321 0112566777777777665 66656
Q ss_pred CCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCC-CCCccccccCHH
Q 015080 298 ADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRR-PGDYAEVYSDPT 376 (413)
Q Consensus 298 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-~~~~~~~~~d~~ 376 (413)
++.+.++|+|++|+|++++.+++.+.. + +||+++++++|+.|+++.+.+.+| +.++...|.. ........+|++
T Consensus 222 -~g~~~~~~i~v~Dva~ai~~~~~~~~~--g-~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~~~~~~~~~~d~~ 296 (362)
T 3sxp_A 222 -FGEQLRDFVYIEDVIQANVKAMKAQKS--G-VYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPYAFFQKHTQAHIE 296 (362)
T ss_dssp -GGCCEEECEEHHHHHHHHHHHTTCSSC--E-EEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC-------CCCCBCCH
T ss_pred -CCCeEEccEEHHHHHHHHHHHHhcCCC--C-EEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCCCcCcccceecCHH
Confidence 778899999999999999999986643 3 999999999999999999999999 8777776655 455567889999
Q ss_pred HHHHhcCcccccccHHHHHHHHHHHHHhccC
Q 015080 377 KIRLELNWTAKYTNLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 377 k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 407 (413)
|+++.|||+|++ +++++|+++++||+++.+
T Consensus 297 k~~~~lG~~p~~-~l~e~l~~~~~~~~~~~~ 326 (362)
T 3sxp_A 297 PTILDLDYTPLY-DLESGIKDYLPHIHAIFK 326 (362)
T ss_dssp HHHHHHCCCCCC-CHHHHHHHHHHHHTCC--
T ss_pred HHHHHhCCCCCC-CHHHHHHHHHHHHHHHhh
Confidence 999999999998 899999999999987754
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-45 Score=351.93 Aligned_cols=309 Identities=25% Similarity=0.360 Sum_probs=252.0
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHC--CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
||+|||||||||||++++++|+++ |++|++++|...... .+.+..+. ..++.++.+|++|.+++.+++ .++|
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~--~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~--~~~d 77 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN--KANLEAIL--GDRVELVVGDIADAELVDKLA--AKAD 77 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC--GGGTGGGC--SSSEEEEECCTTCHHHHHHHH--TTCS
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCC--hhHHhhhc--cCCeEEEECCCCCHHHHHHHh--hcCC
Confidence 589999999999999999999999 899999998643211 11122221 257899999999999999999 6789
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCC------------CCCCCCCCCC
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEK------------MPITEETPQA 215 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~------------~~~~e~~~~~ 215 (413)
+||||||.........+++..+++|+.++.++++++.+.++ +|||+||.++||.... .+++|+.+..
T Consensus 78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~~ 156 (348)
T 1oc2_A 78 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYN 156 (348)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCC
T ss_pred EEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEecccceeCCCcccccccccccccCCCcCCCCCCC
Confidence 99999997654333456678899999999999999999887 9999999999986532 5788888888
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccc
Q 015080 216 PINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDY 295 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 295 (413)
|.++|+.||+++|.+++.++.++|++++++||+.||||..... .+++.++..+..+.+ +.+.+
T Consensus 157 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~--- 219 (348)
T 1oc2_A 157 PSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE-------------KFIPRQITNILAGIK-PKLYG--- 219 (348)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT-------------SHHHHHHHHHHHTCC-CEEET---
T ss_pred CCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCcc-------------chHHHHHHHHHcCCC-ceEec---
Confidence 8999999999999999999888899999999999999974311 455666666665555 66666
Q ss_pred cCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCce-eEecCCCCCCccccccC
Q 015080 296 STADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIK-VIYEPRRPGDYAEVYSD 374 (413)
Q Consensus 296 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d 374 (413)
++.+.++|+|++|+|++++.+++.+.. +++||+++++++|+.|+++.+.+.+|.+.+ +.+.+..+.......+|
T Consensus 220 ---~~~~~~~~i~v~Dva~~~~~~~~~~~~--g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d 294 (348)
T 1oc2_A 220 ---EGKNVRDWIHTNDHSTGVWAILTKGRM--GETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAID 294 (348)
T ss_dssp ---TSCCEEECEEHHHHHHHHHHHHHHCCT--TCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBC
T ss_pred ---CCCceEeeEEHHHHHHHHHHHhhCCCC--CCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCCCCCCcccccccC
Confidence 778889999999999999999987543 379999999999999999999999998753 33333333333456789
Q ss_pred HHHHHHhcCcccccccHHHHHHHHHHHHHhccC
Q 015080 375 PTKIRLELNWTAKYTNLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 375 ~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 407 (413)
++|++++|||+|++++++++|+++++|++++..
T Consensus 295 ~~k~~~~lG~~p~~~~~~~~l~~~~~~~~~~~~ 327 (348)
T 1oc2_A 295 ASKLRDELGWTPQFTDFSEGLEETIQWYTDNQD 327 (348)
T ss_dssp CHHHHHHHCCCCSCCCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHcCCCCCCCcHHHHHHHHHHHHHHhhh
Confidence 999999999999983399999999999987643
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-46 Score=359.72 Aligned_cols=317 Identities=24% Similarity=0.351 Sum_probs=247.7
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCC-CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
||+|||||||||||++++++|+++| ++|++++|......+. +. ...+++++.+|++|++++.+++ .++|+
T Consensus 32 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~---l~----~~~~v~~~~~Dl~d~~~l~~~~--~~~d~ 102 (377)
T 2q1s_A 32 NTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKIN---VP----DHPAVRFSETSITDDALLASLQ--DEYDY 102 (377)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGG---SC----CCTTEEEECSCTTCHHHHHHCC--SCCSE
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhh---cc----CCCceEEEECCCCCHHHHHHHh--hCCCE
Confidence 3899999999999999999999999 9999998865433211 11 1257899999999999999998 58999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccceecCCCCCCCCC--CCC---CC-CCCChhH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-GVDTLIYSSTCATYGEPEKMPIT--EET---PQ-APINPYG 221 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~iV~~SS~~~~~~~~~~~~~--e~~---~~-~~~~~Y~ 221 (413)
||||||......+..++...+++|+.++.++++++++. ++++||++||.++|+.....+++ |+. +. .|.++|+
T Consensus 103 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~~~~~Y~ 182 (377)
T 2q1s_A 103 VFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYS 182 (377)
T ss_dssp EEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CCCCCCCSSCCCSHHH
T ss_pred EEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCcccccccccccCCCCchH
Confidence 99999976543334567889999999999999999998 88999999999999877666777 877 66 7889999
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCc
Q 015080 222 KAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGT 301 (413)
Q Consensus 222 ~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 301 (413)
.+|+++|.+++.++.+.|+++++|||+.||||...+..|.+........+.+++.++..+..+.+ +.+.+ +++
T Consensus 183 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~g------~g~ 255 (377)
T 2q1s_A 183 MSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMP-LPLEN------GGV 255 (377)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCC-CCCSG------GGC
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCC-eEEeC------CCC
Confidence 99999999999998888999999999999999752211111100000001566777777777665 55555 678
Q ss_pred eeeecccHHHHHHH-HHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCcc-ccccCHHHHH
Q 015080 302 CVRDYIDVNDLVDA-HVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA-EVYSDPTKIR 379 (413)
Q Consensus 302 ~~~~~i~v~Dva~a-~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~-~~~~d~~k~~ 379 (413)
+.++|+|++|+|++ ++.+++.+. .+ +||+++++++|+.|+++.+.+.+|.+.++...|....... ...+|++|++
T Consensus 256 ~~~~~i~v~Dva~a~i~~~~~~~~--~g-~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~d~~k~~ 332 (377)
T 2q1s_A 256 ATRDFIFVEDVANGLIACAADGTP--GG-VYNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGSPEKAR 332 (377)
T ss_dssp CEECCEEHHHHHHHHHHHHHHCCT--TE-EEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCCCGGGCC-CCCCCCHHHH
T ss_pred eEEeeEEHHHHHHHHHHHHHhcCC--CC-eEEecCCCceeHHHHHHHHHHHhCCCCCceeCCCCccccccccccCHHHHH
Confidence 89999999999999 999998754 44 9999999999999999999999998877666554444444 6788999999
Q ss_pred HhcCcccccccHHHHHHHHHHHHHhcc
Q 015080 380 LELNWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 380 ~~lG~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
++|||+|++ +++|+|+++++||+++.
T Consensus 333 ~~lG~~p~~-~l~e~l~~~~~~~~~~~ 358 (377)
T 2q1s_A 333 RELGFSADV-SIDDGLRKTIEWTKANL 358 (377)
T ss_dssp HHHCCCCCC-CHHHHHHHHHHHHHHTH
T ss_pred HHcCCCCCC-CHHHHHHHHHHHHHHhh
Confidence 999999998 89999999999998763
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-45 Score=349.32 Aligned_cols=313 Identities=21% Similarity=0.227 Sum_probs=252.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++++++|+++|++|++++|....... ..+..+. ...++.++.+|++|.+++.++++..++|+||
T Consensus 15 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vi 91 (335)
T 1rpn_A 15 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTR--WRLRELG-IEGDIQYEDGDMADACSVQRAVIKAQPQEVY 91 (335)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC--HHHHHTT-CGGGEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccc--cchhhcc-ccCceEEEECCCCCHHHHHHHHHHcCCCEEE
Confidence 899999999999999999999999999999986543211 1122211 1257899999999999999999655789999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC-CEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV-DTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAED 229 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 229 (413)
||||.........++...+++|+.++.++++++++.++ ++||++||.++|+.....+++|+.+..|.++|+.+|+++|.
T Consensus 92 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~~~e~ 171 (335)
T 1rpn_A 92 NLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHW 171 (335)
T ss_dssp ECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHH
T ss_pred ECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcccCCCCCChhHHHHHHHHH
Confidence 99997654434567888999999999999999999885 89999999999998777788999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccH
Q 015080 230 IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 230 ~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
+++.++.+++++++++||+.+|||+....+ ...++..++..+..+.......| ++++.++|+|+
T Consensus 172 ~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~g------~g~~~~~~i~v 235 (335)
T 1rpn_A 172 ITVNYRESFGLHASSGILFNHESPLRGIEF----------VTRKVTDAVARIKLGKQQELRLG------NVDAKRDWGFA 235 (335)
T ss_dssp HHHHHHHHHCCCEEEEEECCEECTTSCTTS----------HHHHHHHHHHHHHTTSCSCEEES------CTTCEEECEEH
T ss_pred HHHHHHHHcCCcEEEEeeCcccCCCCCCCc----------chHHHHHHHHHHHcCCCceEEeC------CCcceeceEEH
Confidence 999998888999999999999999743110 00223444444455543233445 78899999999
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCce--eEecC--CCCCCccccccCHHHHHHhcCcc
Q 015080 310 NDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIK--VIYEP--RRPGDYAEVYSDPTKIRLELNWT 385 (413)
Q Consensus 310 ~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~--~~~~~--~~~~~~~~~~~d~~k~~~~lG~~ 385 (413)
+|+|++++.+++.+.. ++||+++++++|+.|+++.+.+.+|.+.+ ....+ ..+.......+|++|++++|||+
T Consensus 236 ~Dva~a~~~~~~~~~~---~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 312 (335)
T 1rpn_A 236 GDYVEAMWLMLQQDKA---DDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWK 312 (335)
T ss_dssp HHHHHHHHHHHHSSSC---CCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCC---CEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccCCCcchhhcCCHHHHHHhcCCC
Confidence 9999999999987542 69999999999999999999999998643 22211 22333445678999999999999
Q ss_pred cccccHHHHHHHHHHHHHhcc
Q 015080 386 AKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 386 p~~~~~~e~l~~~~~~~~~~~ 406 (413)
|++ +++++|+++++||+++.
T Consensus 313 p~~-~l~e~l~~~~~~~~~~~ 332 (335)
T 1rpn_A 313 PRT-SLDELIRMMVEADLRRV 332 (335)
T ss_dssp CCS-CHHHHHHHHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHHHHHHhh
Confidence 998 89999999999998874
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=352.88 Aligned_cols=314 Identities=21% Similarity=0.260 Sum_probs=253.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+||||++|+++|+++|++|++++|...+.....+.+. ...++.++.+|++|++++.++++..++|+||
T Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 85 (357)
T 1rkx_A 10 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR----VADGMQSEIGDIRDQNKLLESIREFQPEIVF 85 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT----TTTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhc----cCCceEEEEccccCHHHHHHHHHhcCCCEEE
Confidence 899999999999999999999999999999987655443333221 1357899999999999999999655699999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccceecCCCCC-CCCCCCCCCCCCChhHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VDTLIYSSTCATYGEPEK-MPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~iV~~SS~~~~~~~~~-~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
||||.........++...+++|+.++.++++++.+.+ +++||++||.++||.... .+++|+.+..|.++|+.||+++|
T Consensus 86 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~~~~~~~~~Y~~sK~~~e 165 (357)
T 1rkx_A 86 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAE 165 (357)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHHHHH
T ss_pred ECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCCCCCCCCCccHHHHHHHH
Confidence 9999644333445677889999999999999999886 889999999999987653 46788888888999999999999
Q ss_pred HHHHHHHhhC---------CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCC
Q 015080 229 DIILDFSKNS---------DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTAD 299 (413)
Q Consensus 229 ~~~~~~~~~~---------gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 299 (413)
.+++.++.++ |++++++||+.||||+.... +.+++.++..+..+.+ +.+. +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~------------~~~~~~~~~~~~~g~~-~~~~-------~ 225 (357)
T 1rkx_A 166 LVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWAL------------DRIVPDILRAFEQSQP-VIIR-------N 225 (357)
T ss_dssp HHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCS------------SCHHHHHHHHHHTTCC-EECS-------C
T ss_pred HHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCcc------------ccHHHHHHHHHhcCCC-EEEC-------C
Confidence 9999988764 99999999999999974211 1567777777776665 4443 5
Q ss_pred CceeeecccHHHHHHHHHHHHHhc---CCCCccEEEecCC--CcccHHHHHHHHHHHcCCCceeEecCC-CCCCcccccc
Q 015080 300 GTCVRDYIDVNDLVDAHVKALERA---QPKKVGIYNVGTG--KGRSVKEFVEACKKATSANIKVIYEPR-RPGDYAEVYS 373 (413)
Q Consensus 300 ~~~~~~~i~v~Dva~a~~~~~~~~---~~~~~~~yni~~~--~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~ 373 (413)
+++.++|+|++|+|++++.+++.. ....+++||++++ +++|+.|+++.+.+.+|.+.++...+. .+.......+
T Consensus 226 ~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (357)
T 1rkx_A 226 PHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKL 305 (357)
T ss_dssp TTCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCB
T ss_pred CCCeeccEeHHHHHHHHHHHHHhhhhcCCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCccccCCCCCCcCcccccC
Confidence 678899999999999999998852 1122379999874 689999999999999998876654432 2233446789
Q ss_pred CHHHHHHhcCcccccccHHHHHHHHHHHHHhccCCC
Q 015080 374 DPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409 (413)
Q Consensus 374 d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~ 409 (413)
|++|++++|||+|++ +++++|+++++||+++.++-
T Consensus 306 d~~k~~~~lG~~p~~-~l~e~l~~~~~~~~~~~~~~ 340 (357)
T 1rkx_A 306 DCSKAKMQLGWHPRW-NLNTTLEYIVGWHKNWLSGT 340 (357)
T ss_dssp CCHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHhCCCcCC-cHHHHHHHHHHHHHHHhcCC
Confidence 999999999999998 89999999999999876543
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-46 Score=352.29 Aligned_cols=297 Identities=27% Similarity=0.412 Sum_probs=252.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++|+++|+++|++|++++|...........+..... ..+++++.+|++ ++|+||
T Consensus 8 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~------------~~d~vi 74 (321)
T 3vps_A 8 HRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLE-KPVLELEERDLS------------DVRLVY 74 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEEC-SCGGGCCHHHHT------------TEEEEE
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhcc-CCCeeEEeCccc------------cCCEEE
Confidence 8999999999999999999999999999999865521111111111111 145666677765 789999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
|+||.........++...++ |+.++.++++++++.++++|||+||.++|+.....+++|+.+..|.+.|+.+|+++|.+
T Consensus 75 ~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 153 (321)
T 3vps_A 75 HLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMV 153 (321)
T ss_dssp ECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred ECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Confidence 99998765444555666777 99999999999999999999999999999988888999999999999999999999999
Q ss_pred HHHHHhhCCC-cEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccH
Q 015080 231 ILDFSKNSDM-AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 231 ~~~~~~~~gi-~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
++.++.++|+ +++++||+.+|||+.... .+++.++..+..+.+ +.+.+ ++.+.++|+|+
T Consensus 154 ~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~v~v 213 (321)
T 3vps_A 154 AGAHQRASVAPEVGIVRFFNVYGPGERPD-------------ALVPRLCANLLTRNE-LPVEG------DGEQRRDFTYI 213 (321)
T ss_dssp HHHHHHSSSSCEEEEEEECEEECTTCCTT-------------SHHHHHHHHHHHHSE-EEEET------TSCCEECEEEH
T ss_pred HHHHHHHcCCCceEEEEeccccCcCCCCC-------------ChHHHHHHHHHcCCC-eEEeC------CCCceEceEEH
Confidence 9999998999 999999999999975421 567777777777766 77777 78899999999
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCccc-cc
Q 015080 310 NDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTA-KY 388 (413)
Q Consensus 310 ~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p-~~ 388 (413)
+|+|++++.++..+.. + +||+++++++|+.|+++.+. .+|.+.++...+..........+|++|++++|||+| ++
T Consensus 214 ~Dva~~~~~~~~~~~~--g-~~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~ 289 (321)
T 3vps_A 214 TDVVDKLVALANRPLP--S-VVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPRPNEITEFRADTALQTRQIGERSGGI 289 (321)
T ss_dssp HHHHHHHHHGGGSCCC--S-EEEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCCTTCCSBCCBCCHHHHHHHCCCSCCC
T ss_pred HHHHHHHHHHHhcCCC--C-eEEecCCCcccHHHHHHHHH-HhCCCCccccCCCCCCCcceeeccHHHHHHHhCCCCCcC
Confidence 9999999999997665 3 99999999999999999999 999999988888777777788999999999999999 77
Q ss_pred ccHHHHHHHHHHHHHhcc
Q 015080 389 TNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 389 ~~~~e~l~~~~~~~~~~~ 406 (413)
+++++|+++++||+++.
T Consensus 290 -~~~~~l~~~~~~~~~~~ 306 (321)
T 3vps_A 290 -GIEEGIRLTLEWWQSRD 306 (321)
T ss_dssp -CHHHHHHHHHHHHHTSC
T ss_pred -CHHHHHHHHHHHHHhCC
Confidence 89999999999999874
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=349.88 Aligned_cols=310 Identities=23% Similarity=0.348 Sum_probs=250.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
|+||||||+||||++++++|++. |++|++++|...... .+.+.++.. ..++.++.+|++|.+++.+++++.++|+|
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGN--LESLSDISE-SNRYNFEHADICDSAEITRIFEQYQPDAV 77 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCC--GGGGTTTTT-CTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCc--hhhhhhhhc-CCCeEEEECCCCCHHHHHHHHhhcCCCEE
Confidence 36999999999999999999998 799999998642111 111222211 35789999999999999999965589999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc--CCC-------EEEEeccceecCCCCC--C--------CCCC
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH--GVD-------TLIYSSTCATYGEPEK--M--------PITE 210 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~-------~iV~~SS~~~~~~~~~--~--------~~~e 210 (413)
|||||.........+++..+++|+.++.++++++.+. +++ +||++||.++||.... . +++|
T Consensus 78 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E 157 (361)
T 1kew_A 78 MHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTE 157 (361)
T ss_dssp EECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCT
T ss_pred EECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCC
Confidence 9999976533334567789999999999999999988 776 9999999999986542 1 6888
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
+.+..|.++|+.||+++|.+++.++.++|++++++||+.||||..... .+++.++..+..+.+ +++
T Consensus 158 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~-------------~~~~~~~~~~~~~~~-~~~ 223 (361)
T 1kew_A 158 TTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE-------------KLIPLVILNALEGKP-LPI 223 (361)
T ss_dssp TSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-------------SHHHHHHHHHHHTCC-EEE
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcc-------------cHHHHHHHHHHcCCC-ceE
Confidence 888888999999999999999999888899999999999999974311 455666666665555 666
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCce--------eEecC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIK--------VIYEP 362 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~--------~~~~~ 362 (413)
.+ ++.+.++|+|++|+|++++.+++.... +++||+++++++|+.|+++.+.+.+|.+.+ +...+
T Consensus 224 ~~------~~~~~~~~i~v~Dva~a~~~~~~~~~~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~ 295 (361)
T 1kew_A 224 YG------KGDQIRDWLYVEDHARALHMVVTEGKA--GETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVA 295 (361)
T ss_dssp ET------TSCCEEEEEEHHHHHHHHHHHHHHCCT--TCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEEC
T ss_pred cC------CCceeEeeEEHHHHHHHHHHHHhCCCC--CCEEEecCCCeeeHHHHHHHHHHHhCCcCccccccccceeecC
Confidence 66 788899999999999999999987643 379999999999999999999999986543 22223
Q ss_pred CCCCCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhcc
Q 015080 363 RRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 363 ~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
..........+|++|++++|||+|++ +++++|+++++|++++.
T Consensus 296 ~~~~~~~~~~~d~~k~~~~lG~~p~~-~~~e~l~~~~~~~~~~~ 338 (361)
T 1kew_A 296 DRPGHDRRYAIDAGKISRELGWKPLE-TFESGIRKTVEWYLANT 338 (361)
T ss_dssp CCTTCCCBCCBCCHHHHHHHCCCCSC-CHHHHHHHHHHHHHHCH
T ss_pred CCCcccceeecCHHHHHHHhCCCCcc-CHHHHHHHHHHHHHhcc
Confidence 23333345678999999999999998 89999999999998763
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-44 Score=349.69 Aligned_cols=307 Identities=21% Similarity=0.268 Sum_probs=251.7
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
.||+|||||||||||++++++|+++|++|++++|......... ..++.++.+|++|.+++.+++ .++|+
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~v~~~~~Dl~d~~~~~~~~--~~~d~ 96 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTED---------MFCDEFHLVDLRVMENCLKVT--EGVDH 96 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGG---------GTCSEEEECCTTSHHHHHHHH--TTCSE
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhc---------cCCceEEECCCCCHHHHHHHh--CCCCE
Confidence 3589999999999999999999999999999998654432111 146889999999999999999 68999
Q ss_pred EEEcCcccCccCC-cCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCC-----CCCCCCC--CCCCCChh
Q 015080 149 VMHFAAVAYVGES-TLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEK-----MPITEET--PQAPINPY 220 (413)
Q Consensus 149 vi~~Ag~~~~~~~-~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~-----~~~~e~~--~~~~~~~Y 220 (413)
||||||....... ..++...+++|+.++.++++++++.++++|||+||.++|+.... .+++|++ +..|.++|
T Consensus 97 Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~Y 176 (379)
T 2c5a_A 97 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAF 176 (379)
T ss_dssp EEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHH
T ss_pred EEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCChh
Confidence 9999997543221 45688899999999999999999999999999999999985422 3466766 66778899
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCC
Q 015080 221 GKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300 (413)
Q Consensus 221 ~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 300 (413)
+.+|+++|.+++.++.++|+++++|||+.+|||......+ ...++..++..+..+.+.+.+.+ ++
T Consensus 177 ~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~g------~g 241 (379)
T 2c5a_A 177 GLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGG---------REKAPAAFCRKAQTSTDRFEMWG------DG 241 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSS---------CCCHHHHHHHHHHHCSSCEEEES------CS
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccc---------cccHHHHHHHHHHhCCCceEEeC------CC
Confidence 9999999999999988889999999999999997532110 01355666666655443366666 78
Q ss_pred ceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHH
Q 015080 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRL 380 (413)
Q Consensus 301 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 380 (413)
.+.++|+|++|+|++++.+++.+ . +++||+++++.+|+.|+++.+.+.+|.+.++...|.+. ......+|++|+++
T Consensus 242 ~~~~~~i~v~Dva~ai~~~l~~~-~--~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~-~~~~~~~d~~k~~~ 317 (379)
T 2c5a_A 242 LQTRSFTFIDECVEGVLRLTKSD-F--REPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKE 317 (379)
T ss_dssp CCEECCEEHHHHHHHHHHHHHSS-C--CSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCC-CCSBCEECCHHHHH
T ss_pred CeeEEEEEHHHHHHHHHHHhhcc-C--CCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCCC-CcccccCCHHHHHH
Confidence 88999999999999999999865 2 36999999999999999999999999888776666533 23456789999999
Q ss_pred hcCcccccccHHHHHHHHHHHHHhcc
Q 015080 381 ELNWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 381 ~lG~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
+|||+|++ +++++|+++++||+++.
T Consensus 318 ~lG~~p~~-~l~e~l~~~~~~~~~~~ 342 (379)
T 2c5a_A 318 KLGWAPNM-RLKEGLRITYFWIKEQI 342 (379)
T ss_dssp HHSCCCCC-CHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCC-CHHHHHHHHHHHHHHhH
Confidence 99999998 89999999999998764
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-44 Score=348.14 Aligned_cols=318 Identities=23% Similarity=0.271 Sum_probs=248.4
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCC--chhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN--IGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
||+|||||||||||++++++|+++|++|++++|..... .............+.++.++.+|++|.+++.++++..++|
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence 58999999999999999999999999999998864431 1111111100001247889999999999999999765789
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC---CEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHH
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV---DTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAK 224 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~---~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK 224 (413)
+||||||........+++...+++|+.++.++++++.+.++ ++||++||.++|+.....+++|+.+..|.++|+.||
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~~~~~~~~~Y~~sK 160 (372)
T 1db3_A 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAK 160 (372)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHHH
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCccCCCCCCChHHHHH
Confidence 99999998665555667888999999999999999999887 899999999999987767889999988999999999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceee
Q 015080 225 KMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304 (413)
Q Consensus 225 ~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 304 (413)
+++|.+++.++.+++++++++||+.+|||+....+ ...++..++..+..+.+.....| ++++.+
T Consensus 161 ~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~g------~~~~~~ 224 (372)
T 1db3_A 161 LYAYWITVNYRESYGMYACNGILFNHESPRRGETF----------VTRKITRAIANIAQGLESCLYLG------NMDSLR 224 (372)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTS----------HHHHHHHHHHHHHTTSCCCEEES------CTTCEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcc----------hhhHHHHHHHHHHcCCCCceeec------CCCcee
Confidence 99999999999888999999999999999743110 00233444555555543244455 788899
Q ss_pred ecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEe------------------------
Q 015080 305 DYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY------------------------ 360 (413)
Q Consensus 305 ~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~------------------------ 360 (413)
+|+|++|+|++++.+++++.. ++||+++++++|+.|+++.+.+.+|.+.++..
T Consensus 225 ~~i~v~Dva~a~~~~~~~~~~---~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 301 (372)
T 1db3_A 225 DWGHAKDYVKMQWMMLQQEQP---EDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGD 301 (372)
T ss_dssp CCEEHHHHHHHHHHTTSSSSC---CCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTC
T ss_pred eeeEHHHHHHHHHHHHhcCCC---ceEEEcCCCceeHHHHHHHHHHHhCCCccccccccccccccccccccccccccccc
Confidence 999999999999999886542 69999999999999999999999997654321
Q ss_pred -----cC--CCCCCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccC
Q 015080 361 -----EP--RRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 361 -----~~--~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 407 (413)
.+ ..........+|++|++++|||+|++ +++|+|+++++||+++.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~l~e~l~~~~~~~~~~~~ 354 (372)
T 1db3_A 302 VIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEI-TLREMVSEMVANDLEAAK 354 (372)
T ss_dssp EEEEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCS-CHHHHHHHHHHHHHHHHH
T ss_pred ceeeccccccCCCchhhhccCHHHHHHHhCCcccc-CHHHHHHHHHHHHHHhhh
Confidence 01 11222334567999999999999998 899999999999987743
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-44 Score=350.04 Aligned_cols=329 Identities=24% Similarity=0.243 Sum_probs=250.8
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCch-------------hhhhhhhhc-CCCCceEEEEccCCCHH
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIG-------------AVKVLQELF-PEPGRLQFIYADLGDAK 135 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~-------------~~~~~~~~~-~~~~~~~~~~~Dl~d~~ 135 (413)
|++|||||||||||++|+++|+++|++|++++|..+.... +.+.+.... ....++.++.+|++|.+
T Consensus 11 ~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d~~ 90 (404)
T 1i24_A 11 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 90 (404)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCCHH
Confidence 4899999999999999999999999999999875432110 011111100 00247899999999999
Q ss_pred HHHHHhhcCCCcEEEEcCcccCccCCcCChH---HHHHHHHHHHHHHHHHHHHcCC-CEEEEeccceecCCCCCCCCCCC
Q 015080 136 AVNKFFSENAFDAVMHFAAVAYVGESTLDPL---KYYHNITSNTLVVLESMARHGV-DTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 136 ~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~---~~~~~n~~~~~~ll~~~~~~~~-~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
++.++++..++|+||||||.........+++ ..+++|+.++.++++++++.+. ++||++||.++||... .+++|+
T Consensus 91 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~-~~~~E~ 169 (404)
T 1i24_A 91 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDIEEG 169 (404)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCBCSS
T ss_pred HHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC-CCCCcc
Confidence 9999986556999999999765433333443 4789999999999999999887 5999999999998765 356665
Q ss_pred --------------CCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCC---CCCCCccccc-ccch
Q 015080 212 --------------TPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRL---GEAPRPELRE-HGRI 273 (413)
Q Consensus 212 --------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~---~~~~~~~~~~-~~~~ 273 (413)
.+..|.++|+.||+++|.+++.++.++|++++++||+.||||+..+.. +......... .+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~ 249 (404)
T 1i24_A 170 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTA 249 (404)
T ss_dssp EEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCH
T ss_pred ccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccchhhH
Confidence 366778899999999999999998888999999999999999753210 0000000000 0145
Q ss_pred HHHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCcccHHHHHHHHHHH-
Q 015080 274 SGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGRSVKEFVEACKKA- 351 (413)
Q Consensus 274 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~- 351 (413)
+..++..+..+.+ +.+.| ++.+.++|+|++|+|++++.+++.+.. +..++||+++ +++|+.|+++.+.+.
T Consensus 250 ~~~~~~~~~~g~~-~~~~g------~g~~~~~~i~v~Dva~a~~~~l~~~~~~g~~~~yni~~-~~~s~~e~~~~i~~~~ 321 (404)
T 1i24_A 250 LNRFCVQAAVGHP-LTVYG------KGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFT-EQFSVNELASLVTKAG 321 (404)
T ss_dssp HHHHHHHHHHTCC-EEEET------TSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECS-EEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCe-eEEeC------CCCceECcEEHHHHHHHHHHHHhCcccCCCceEEEECC-CCCcHHHHHHHHHHHH
Confidence 6677777776665 66777 788899999999999999999986543 2126999988 889999999999998
Q ss_pred --cCCCceeEecCCCCC--CccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccCCC
Q 015080 352 --TSANIKVIYEPRRPG--DYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409 (413)
Q Consensus 352 --~g~~~~~~~~~~~~~--~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~ 409 (413)
+|.+.++...|.... ......+|++|++ +|||+|++ +++++++++++|++.+.+.+
T Consensus 322 ~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~-~LG~~p~~-~~~~~l~~~~~~~~~~~~~~ 381 (404)
T 1i24_A 322 SKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHY-LSDSLLDSLLNFAVQFKDRV 381 (404)
T ss_dssp HTTTCCCCEEEECCSSCSCSSCCCCBCCCHHH-HTTCCCCC-CCHHHHHHHHHHHHHTGGGC
T ss_pred HhhCCCccccccCcccCccccceEecCHHHHH-HcCCCcCc-CHHHHHHHHHHHHHhhhhcc
Confidence 888877666554432 2234567999998 79999998 89999999999998887665
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-44 Score=341.36 Aligned_cols=303 Identities=27% Similarity=0.406 Sum_probs=248.7
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
||+|||||||||||++|+++|+++|++|++++|......... ..+.. ..++.++.+|+.+.. + .++|+|
T Consensus 27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---~~~~~-~~~~~~~~~D~~~~~-----~--~~~d~v 95 (343)
T 2b69_A 27 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNV---EHWIG-HENFELINHDVVEPL-----Y--IEVDQI 95 (343)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGT---GGGTT-CTTEEEEECCTTSCC-----C--CCCSEE
T ss_pred CCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhh---hhhcc-CCceEEEeCccCChh-----h--cCCCEE
Confidence 489999999999999999999999999999998654332211 11111 257899999998863 3 579999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCC-----CCCCCCChhHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEE-----TPQAPINPYGKAK 224 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~-----~~~~~~~~Y~~sK 224 (413)
|||||.........++...+++|+.++.++++++++.++ ++|++||.++|+.....+++|+ .+..|.+.|+.+|
T Consensus 96 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~~sK 174 (343)
T 2b69_A 96 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGK 174 (343)
T ss_dssp EECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHH
T ss_pred EECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-cEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchHHHH
Confidence 999997654434557788899999999999999999886 9999999999987766677777 4666778899999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceee
Q 015080 225 KMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304 (413)
Q Consensus 225 ~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 304 (413)
+++|.+++.++++.|++++++||+.||||+..... +.+++.++..+..+.+ +.+.+ ++.+.+
T Consensus 175 ~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~------~~~~~~ 236 (343)
T 2b69_A 175 RVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMND-----------GRVVSNFILQALQGEP-LTVYG------SGSQTR 236 (343)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTC-----------CCHHHHHHHHHHHTCC-EEEES------SSCCEE
T ss_pred HHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCc-----------ccHHHHHHHHHHcCCC-ceEcC------CCCeEE
Confidence 99999999998888999999999999999743210 1455666666666555 66666 788899
Q ss_pred ecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCc
Q 015080 305 DYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNW 384 (413)
Q Consensus 305 ~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~ 384 (413)
+|+|++|+|++++.+++.+. +++||+++++++|+.|+++.+.+.+|.+.++...|..........+|++|++++|||
T Consensus 237 ~~v~v~Dva~a~~~~~~~~~---~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~d~~k~~~~lG~ 313 (343)
T 2b69_A 237 AFQYVSDLVNGLVALMNSNV---SSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGW 313 (343)
T ss_dssp ECEEHHHHHHHHHHHHTSSC---CSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCC
T ss_pred eeEeHHHHHHHHHHHHhcCC---CCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCCCCCCceecCCHHHHHHHcCC
Confidence 99999999999999987543 369999999999999999999999999888777665544555678899999999999
Q ss_pred ccccccHHHHHHHHHHHHHhcc
Q 015080 385 TAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 385 ~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
+|++ +++|+|+++++|++++.
T Consensus 314 ~p~~-~l~e~l~~~~~~~~~~~ 334 (343)
T 2b69_A 314 EPVV-PLEEGLNKAIHYFRKEL 334 (343)
T ss_dssp CCCS-CHHHHHHHHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHHHHHHH
Confidence 9988 89999999999998763
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=342.10 Aligned_cols=298 Identities=19% Similarity=0.315 Sum_probs=244.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++|+++|+++|++|++++|.. .+|++|.+++.++++..++|+||
T Consensus 4 ~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~-----------------------~~D~~d~~~~~~~~~~~~~d~vi 60 (321)
T 1e6u_A 4 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------------ELNLLDSRAVHDFFASERIDQVY 60 (321)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-----------------------TCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc-----------------------cCCccCHHHHHHHHHhcCCCEEE
Confidence 7899999999999999999999999999876421 17999999999999544899999
Q ss_pred EcCcccCc-cCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC----CCCCC-ChhHHHH
Q 015080 151 HFAAVAYV-GESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET----PQAPI-NPYGKAK 224 (413)
Q Consensus 151 ~~Ag~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~----~~~~~-~~Y~~sK 224 (413)
|+||.... .....++...+++|+.++.++++++++.++++|||+||.++|+.....+++|+. +..|. +.|+.+|
T Consensus 61 h~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK 140 (321)
T 1e6u_A 61 LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAK 140 (321)
T ss_dssp ECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHH
T ss_pred EcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCccccccCCCCCCCCccHHHH
Confidence 99997532 123456778899999999999999999999999999999999987667788886 45553 5899999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhc----c-ccceeEecccccCCC
Q 015080 225 KMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARG----I-IAGLKVKGTDYSTAD 299 (413)
Q Consensus 225 ~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~i~~~g~~~~~~~ 299 (413)
.++|.+++.+++++|++++++||+.||||+...... .+.+++.++..+.. + .+ +.+.+ +
T Consensus 141 ~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~-~~~~~------~ 204 (321)
T 1e6u_A 141 IAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPS---------NSHVIPALLRRFHEATAQKAPD-VVVWG------S 204 (321)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTT---------CSSHHHHHHHHHHHHHHHTCSE-EEEES------C
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCC---------CCccHHHHHHHHHHhhhcCCCc-eEEcC------C
Confidence 999999999988889999999999999997532100 11455666665543 2 33 66676 7
Q ss_pred CceeeecccHHHHHHHHHHHHHhcCCC-------CccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccc
Q 015080 300 GTCVRDYIDVNDLVDAHVKALERAQPK-------KVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVY 372 (413)
Q Consensus 300 ~~~~~~~i~v~Dva~a~~~~~~~~~~~-------~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ 372 (413)
+++.++|+|++|+|++++.+++++... .+++||+++++++|+.|+++.+.+.+|.+.++...+..+.......
T Consensus 205 g~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ 284 (321)
T 1e6u_A 205 GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKL 284 (321)
T ss_dssp SCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCC
T ss_pred CCEEEEeEEHHHHHHHHHHHHhCcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCCCCCCccccc
Confidence 889999999999999999999865431 2369999999999999999999999999887776665544555678
Q ss_pred cCHHHHHHhcCcccccccHHHHHHHHHHHHHhccCCC
Q 015080 373 SDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409 (413)
Q Consensus 373 ~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~ 409 (413)
+|++|+++ |||+|++ +++++|+++++||+++.+..
T Consensus 285 ~d~~k~~~-lG~~p~~-~~~~~l~~~~~~~~~~~~~~ 319 (321)
T 1e6u_A 285 LDVTRLHQ-LGWYHEI-SLEAGLASTYQWFLENQDRF 319 (321)
T ss_dssp BCCHHHHH-TTCCCCC-CHHHHHHHHHHHHHHTC---
T ss_pred CCHHHHHh-cCCccCC-cHHHHHHHHHHHHHHHHHhh
Confidence 99999998 9999998 89999999999999987643
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=345.08 Aligned_cols=314 Identities=19% Similarity=0.250 Sum_probs=245.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC-HHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD-AKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~dv 148 (413)
|+|||||||||||++++++|+++ |++|++++|...+... . .. ..++.++.+|++| .+.+.+++ .++|+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~---~----~~-~~~~~~~~~D~~~~~~~~~~~~--~~~d~ 70 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR---F----LN-HPHFHFVEGDISIHSEWIEYHV--KKCDV 70 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGG---G----TT-CTTEEEEECCTTTCSHHHHHHH--HHCSE
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHH---h----hc-CCCeEEEeccccCcHHHHHhhc--cCCCE
Confidence 57999999999999999999998 8999999985433211 1 11 2578999999998 45688888 47899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC-------CCCChhH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ-------APINPYG 221 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~-------~~~~~Y~ 221 (413)
||||||...+.....++...+++|+.++.++++++++.+ ++|||+||.++|+.....+++|+.+. .|.+.|+
T Consensus 71 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~ 149 (345)
T 2bll_A 71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYS 149 (345)
T ss_dssp EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHH
T ss_pred EEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecHHHcCCCCCCCcCCcccccccCcccCcccccH
Confidence 999999765433345677889999999999999999988 89999999999998766677777653 3455899
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCc
Q 015080 222 KAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGT 301 (413)
Q Consensus 222 ~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 301 (413)
.+|+++|.+++.++++.|++++++||+.||||+......+.. ....++..++..+..+.+ +.+.+ +++
T Consensus 150 ~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~------~g~ 217 (345)
T 2bll_A 150 VSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARI-----GSSRAITQLILNLVEGSP-IKLID------GGK 217 (345)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBS-----CBCHHHHHHHHHHHHTCC-EEEGG------GSC
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCccccccccc-----ccccHHHHHHHHHHcCCC-cEEEC------CCC
Confidence 999999999999988889999999999999997532110000 011456666666666655 66666 778
Q ss_pred eeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC-cccHHHHHHHHHHHcCCCceeEecCCCC--------------
Q 015080 302 CVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK-GRSVKEFVEACKKATSANIKVIYEPRRP-------------- 365 (413)
Q Consensus 302 ~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~-~~s~~e~~~~i~~~~g~~~~~~~~~~~~-------------- 365 (413)
+.++|+|++|+|++++.+++.... ..+++||+++++ ++|+.|+++.+.+.+|.+.+....+...
T Consensus 218 ~~~~~i~v~Dva~a~~~~~~~~~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (345)
T 2bll_A 218 QKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKG 297 (345)
T ss_dssp CEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC---------
T ss_pred EEEEEEEHHHHHHHHHHHHhhccccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhhcccc
Confidence 899999999999999999986531 234799999986 8999999999999998765432222211
Q ss_pred -CCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccCC
Q 015080 366 -GDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGG 408 (413)
Q Consensus 366 -~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~ 408 (413)
.......+|++|++++|||+|++ +++++|+++++||+++.+.
T Consensus 298 ~~~~~~~~~d~~k~~~~lG~~p~~-~l~~~l~~~~~~~~~~~~~ 340 (345)
T 2bll_A 298 YQDVEHRKPSIRNAHRCLDWEPKI-DMQETIDETLDFFLRTVDL 340 (345)
T ss_dssp ---CCCCCBCCHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHSCT
T ss_pred ccchhhhcccHHHHHHhcCCCccc-cHHHHHHHHHHHHHHcCCC
Confidence 12235678999999999999998 8999999999999987554
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-44 Score=345.98 Aligned_cols=316 Identities=23% Similarity=0.230 Sum_probs=248.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCc-hhhhhhh-hhcC-CCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNI-GAVKVLQ-ELFP-EPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~-~~~~~~~-~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
|+||||||+||||++++++|+++|++|++++|...... ...+.+. .... ...++.++.+|++|.+++.++++..++|
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 104 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPT 104 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999998654311 1111110 0000 1246889999999999999999765789
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC---CEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHH
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV---DTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAK 224 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~---~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK 224 (413)
+||||||......+.++++..+++|+.++.++++++.+.++ ++||++||.++|+.....+++|+.+..|.++|+.+|
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~~~~~~Y~~sK 184 (375)
T 1t2a_A 105 EIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAK 184 (375)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCCCSHHHHHH
T ss_pred EEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCccCCCCCCChhHHHH
Confidence 99999997654333456778899999999999999999887 899999999999987777889999988999999999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceee
Q 015080 225 KMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304 (413)
Q Consensus 225 ~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 304 (413)
+++|.+++.++.+++++++++||+.+|||+....+ ....+..++..+..+.......| ++++.+
T Consensus 185 ~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~g------~~~~~~ 248 (375)
T 1t2a_A 185 LYAYWIVVNFREAYNLFAVNGILFNHESPRRGANF----------VTRKISRSVAKIYLGQLECFSLG------NLDAKR 248 (375)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTS----------HHHHHHHHHHHHHHTSCSCEEES------CTTCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCc----------chHHHHHHHHHHHcCCCceeEeC------CCCcee
Confidence 99999999999888999999999999999642110 00123333444444432233445 788899
Q ss_pred ecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeE-------------------ecC--C
Q 015080 305 DYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVI-------------------YEP--R 363 (413)
Q Consensus 305 ~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~-------------------~~~--~ 363 (413)
+|+|++|+|++++.+++.+.. ++||+++++++|+.|+++.+.+.+|.+.++. ..+ .
T Consensus 249 ~~i~v~Dva~a~~~~~~~~~~---~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 325 (375)
T 1t2a_A 249 DWGHAKDYVEAMWLMLQNDEP---EDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYY 325 (375)
T ss_dssp CCEEHHHHHHHHHHHHHSSSC---CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGS
T ss_pred eeEEHHHHHHHHHHHHhcCCC---ceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccceeecCcccC
Confidence 999999999999999986543 5999999999999999999999999875432 111 1
Q ss_pred CCCCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhcc
Q 015080 364 RPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 364 ~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
.........+|++|++++|||+|++ +++|+|+++++||++..
T Consensus 326 ~~~~~~~~~~d~~k~~~~lG~~p~~-~l~e~l~~~~~~~~~~~ 367 (375)
T 1t2a_A 326 RPTEVDFLQGDCTKAKQKLNWKPRV-AFDELVREMVHADVELM 367 (375)
T ss_dssp CSSCCCBCCBCCHHHHHHHCCCCCS-CHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcCCHHHHHHhcCCCccC-CHHHHHHHHHHHHHHhh
Confidence 1223345678999999999999998 89999999999998764
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=336.68 Aligned_cols=277 Identities=19% Similarity=0.175 Sum_probs=240.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++++++|+++|++|++++|. ++|++|.+++.++++..++|+||
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~------------------------~~D~~d~~~~~~~~~~~~~d~vi 61 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK------------------------LLDITNISQVQQVVQEIRPHIII 61 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT------------------------TSCTTCHHHHHHHHHHHCCSEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc------------------------ccCCCCHHHHHHHHHhcCCCEEE
Confidence 399999999999999999999999999999761 28999999999999765899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
|+||......+..++...+++|+.++.++++++++.++ +|||+||.++|+.....+++|+.+..|.++|+.+|.++|.+
T Consensus 62 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 140 (287)
T 3sc6_A 62 HCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA-KLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQF 140 (287)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCCCCSSCBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred ECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchhhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 99998765555678889999999999999999999987 89999999999988888999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHH
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~ 310 (413)
++.+. .+++++||+.+|||+.. .+++.++..+..+.+ +.+.| ++.++|+|++
T Consensus 141 ~~~~~----~~~~ilR~~~v~G~~~~---------------~~~~~~~~~~~~~~~-~~~~~--------~~~~~~i~v~ 192 (287)
T 3sc6_A 141 VKELH----NKYFIVRTSWLYGKYGN---------------NFVKTMIRLGKEREE-ISVVA--------DQIGSPTYVA 192 (287)
T ss_dssp HHHHC----SSEEEEEECSEECSSSC---------------CHHHHHHHHHTTCSE-EEEEC--------SCEECCEEHH
T ss_pred HHHhC----CCcEEEeeeeecCCCCC---------------cHHHHHHHHHHcCCC-eEeec--------CcccCceEHH
Confidence 99864 36899999999998643 567777777777665 66654 3788999999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecC-----CCCCCccccccCHHHHHHhcCcc
Q 015080 311 DLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEP-----RRPGDYAEVYSDPTKIRLELNWT 385 (413)
Q Consensus 311 Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-----~~~~~~~~~~~d~~k~~~~lG~~ 385 (413)
|+|++++.+++++. +++||+++++++|+.|+++.+.+.+|.+.++...+ ..........+|++|++ +|||.
T Consensus 193 Dva~~~~~~~~~~~---~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lg~~ 268 (287)
T 3sc6_A 193 DLNVMINKLIHTSL---YGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLR-LNGFL 268 (287)
T ss_dssp HHHHHHHHHHTSCC---CEEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHHCCSSCCCSBCCBCCHHHH-HTTCC
T ss_pred HHHHHHHHHHhCCC---CCeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhcCcccCCCCcccccHHHHH-hhCCC
Confidence 99999999999766 36999999999999999999999999987776543 23344456788999999 99999
Q ss_pred cccccHHHHHHHHHHHHHhc
Q 015080 386 AKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 386 p~~~~~~e~l~~~~~~~~~~ 405 (413)
|.+ +++++|+++++|++++
T Consensus 269 p~~-~~~~~l~~~~~~~~~~ 287 (287)
T 3sc6_A 269 QMP-SWEEGLERFFIETKSH 287 (287)
T ss_dssp CCC-BHHHHHHHHHHHTC--
T ss_pred CCc-cHHHHHHHHHHHHhcC
Confidence 988 9999999999998764
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=339.01 Aligned_cols=315 Identities=23% Similarity=0.259 Sum_probs=250.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++++++|+++|++|++++|....... ..+..+.. ..++.++.+|++|.+++.++++..++|+||
T Consensus 4 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 80 (345)
T 2z1m_A 4 KRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS--WRLKELGI-ENDVKIIHMDLLEFSNIIRTIEKVQPDEVY 80 (345)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT--HHHHHTTC-TTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc--ccHhhccc-cCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence 789999999999999999999999999999986544321 22222221 247899999999999999999655789999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC-CEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV-DTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAED 229 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 229 (413)
||||......+.++++..+++|+.++.++++++.+.++ ++||++||.++||.....+++|+.+..|.++|+.||+++|.
T Consensus 81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 160 (345)
T 2z1m_A 81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHW 160 (345)
T ss_dssp ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHH
T ss_pred ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCccCCCCCCChhHHHHHHHHH
Confidence 99997654434567888999999999999999998886 89999999999998877788999888899999999999999
Q ss_pred HHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccH
Q 015080 230 IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 230 ~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
+++.++.+++++++++|++++|||+.... .. ...+...+..+..+.......+ ++...++|+|+
T Consensus 161 ~~~~~~~~~~~~~~~~r~~~~~gpg~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v 224 (345)
T 2z1m_A 161 ITVNYREAYNMFACSGILFNHESPLRGIE------FV----TRKITYSLARIKYGLQDKLVLG------NLNAKRDWGYA 224 (345)
T ss_dssp HHHHHHHHHCCCEEEEEECCEECTTSCTT------SH----HHHHHHHHHHHHTTSCSCEEES------CTTCEECCEEH
T ss_pred HHHHHHHHhCCceEeeeeeeecCCCCCCc------ch----hHHHHHHHHHHHcCCCCeeeeC------CCCceeeeEEH
Confidence 99999988899999999999999974211 00 0122233333344432133344 67788999999
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeE-------------------ecC--CCCCCc
Q 015080 310 NDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVI-------------------YEP--RRPGDY 368 (413)
Q Consensus 310 ~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~-------------------~~~--~~~~~~ 368 (413)
+|+|++++.+++.+.. ++||+++++++|+.|+++.+.+.+|.+.++. ..+ ......
T Consensus 225 ~Dva~a~~~~~~~~~~---~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (345)
T 2z1m_A 225 PEYVEAMWLMMQQPEP---DDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEV 301 (345)
T ss_dssp HHHHHHHHHHHTSSSC---CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCC
T ss_pred HHHHHHHHHHHhCCCC---ceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCCCc
Confidence 9999999999986543 5999999999999999999999999875532 111 112223
Q ss_pred cccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccCC
Q 015080 369 AEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGG 408 (413)
Q Consensus 369 ~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~ 408 (413)
....+|++|++++|||+|++ +++++|+++++|++++.+.
T Consensus 302 ~~~~~d~~k~~~~lG~~p~~-~~~~~l~~~~~~~~~~~~~ 340 (345)
T 2z1m_A 302 DILVGNPEKAMKKLGWKPRT-TFDELVEIMMEADLKRVRD 340 (345)
T ss_dssp CBCCBCCHHHHHHHCCCCCS-CHHHHHHHHHHHHHHHHHC
T ss_pred ceeecCHHHHHHHcCCcccC-CHHHHHHHHHHHHHHHhcc
Confidence 44567999999999999998 8999999999999987543
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=369.45 Aligned_cols=338 Identities=37% Similarity=0.621 Sum_probs=259.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
+++ |+||||||+||||++|+++|+++|++|++++|.........+.+..+. ..++.++.+|++|.+++.++++..++
T Consensus 9 ~~~-~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~~~ 85 (699)
T 1z45_A 9 STS-KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT--KHHIPFYEVDLCDRKGLEKVFKEYKI 85 (699)
T ss_dssp --C-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH--TSCCCEEECCTTCHHHHHHHHHHSCC
T ss_pred cCC-CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhcc--CCceEEEEcCCCCHHHHHHHHHhCCC
Confidence 334 899999999999999999999999999999986654433333333221 24688999999999999999965589
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCC----CCCCCCCCCCCCCChhHH
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPE----KMPITEETPQAPINPYGK 222 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~----~~~~~e~~~~~~~~~Y~~ 222 (413)
|+||||||..........+...+++|+.++.+++++|++.++++||++||.++|+... ..+++|+.+..|.++|+.
T Consensus 86 D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~~~~~p~~~Y~~ 165 (699)
T 1z45_A 86 DSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGH 165 (699)
T ss_dssp CEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHH
T ss_pred CEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCccccCCCCCCChHHH
Confidence 9999999976543334456778999999999999999999999999999999998642 246788888888999999
Q ss_pred HHHHHHHHHHHHHhh--CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCC
Q 015080 223 AKKMAEDIILDFSKN--SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300 (413)
Q Consensus 223 sK~~~e~~~~~~~~~--~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 300 (413)
||+++|.+++.++.+ .|++++++||+.+|||.+.+.+|+.+... .+.+++.+...+......+.++|..+...++
T Consensus 166 sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 242 (699)
T 1z45_A 166 TKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGI---PNNLLPYMAQVAVGRREKLYIFGDDYDSRDG 242 (699)
T ss_dssp HHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSS---CCSHHHHHHHHHTTSSSCCCCC------CCS
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccc---hhHHHHHHHHHHhcCCCceEEeCCcccCCCC
Confidence 999999999998877 79999999999999998665554422110 1145666665554332225554422222257
Q ss_pred ceeeecccHHHHHHHHHHHHHhcC-----CCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCH
Q 015080 301 TCVRDYIDVNDLVDAHVKALERAQ-----PKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDP 375 (413)
Q Consensus 301 ~~~~~~i~v~Dva~a~~~~~~~~~-----~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~ 375 (413)
.+.++|||++|+|++++.+++... ...+++||+++++.+|+.|+++.+.+.+|.+.++...+....+.....+|+
T Consensus 243 ~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~ 322 (699)
T 1z45_A 243 TPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKP 322 (699)
T ss_dssp SCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------CCCCCBCC
T ss_pred CeeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCCCCceecCCCCCccccccCCH
Confidence 788999999999999999987531 223479999999999999999999999998877665554444555678999
Q ss_pred HHHHHhcCcccccccHHHHHHHHHHHHHhccCCCcc
Q 015080 376 TKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411 (413)
Q Consensus 376 ~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~~~ 411 (413)
+|++++|||+|++ +++|+|+++++|++++..+|+.
T Consensus 323 ~ka~~~LG~~p~~-~l~egl~~~~~w~~~~~~~~~~ 357 (699)
T 1z45_A 323 DRAKRELKWQTEL-QVEDSCKDLWKWTTENPFGYQL 357 (699)
T ss_dssp HHHHHHTCCCCCC-CHHHHHHHHHHHHHHCTTCSCC
T ss_pred HHHHHhcCCCCCC-CHHHHHHHHHHHHHhCCcchhh
Confidence 9999999999998 8999999999999999888863
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=341.92 Aligned_cols=315 Identities=21% Similarity=0.235 Sum_probs=245.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCc--hhhhhhhhhcCCCC-ceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNI--GAVKVLQELFPEPG-RLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~-~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
|+||||||+||||++|+++|+++|++|++++|...... ............+. ++.++.+|++|.+++.++++..++|
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 108 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 108 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999998654311 11111111100112 7889999999999999998655789
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-----EEEEeccceecCCCCCCCCCCCCCCCCCChhHH
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-----TLIYSSTCATYGEPEKMPITEETPQAPINPYGK 222 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-----~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~ 222 (413)
+||||||......+..++...+++|+.++.++++++.+.+++ +||++||.++||.... +++|+.+..|.+.|+.
T Consensus 109 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-~~~E~~~~~~~~~Y~~ 187 (381)
T 1n7h_A 109 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAA 187 (381)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCTTSCCCCCSHHHH
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC-CCCCCCCCCCCCchHH
Confidence 999999976543334567788999999999999999887654 9999999999998766 8899999899999999
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCce
Q 015080 223 AKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTC 302 (413)
Q Consensus 223 sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 302 (413)
+|+++|.+++.++.+++++++++|++.+|||+....+ ...++..++..+..+.+.....| ++++
T Consensus 188 sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~g------~~~~ 251 (381)
T 1n7h_A 188 SKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENF----------VTRKITRALGRIKVGLQTKLFLG------NLQA 251 (381)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTS----------HHHHHHHHHHHHHHTSCCCEEES------CTTC
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcc----------hhHHHHHHHHHHHcCCCCeEEeC------CCCc
Confidence 9999999999998888999999999999999742110 00122333444444432233445 7788
Q ss_pred eeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCce--eEecC--CCCCCccccccCHHHH
Q 015080 303 VRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIK--VIYEP--RRPGDYAEVYSDPTKI 378 (413)
Q Consensus 303 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~--~~~~~--~~~~~~~~~~~d~~k~ 378 (413)
.++|+|++|+|++++.+++.+.. ++||+++++++|+.|+++.+.+.+|.+.+ ....+ ..+.......+|++|+
T Consensus 252 ~~~~v~v~Dva~a~~~~~~~~~~---~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 328 (381)
T 1n7h_A 252 SRDWGFAGDYVEAMWLMLQQEKP---DDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKA 328 (381)
T ss_dssp EEECEEHHHHHHHHHHHHTSSSC---CEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHH
T ss_pred eeeeEEHHHHHHHHHHHHhCCCC---CeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcccCCccccccccCCHHHH
Confidence 99999999999999999986542 69999999999999999999999998642 22222 1223334567899999
Q ss_pred HHhcCcccccccHHHHHHHHHHHHHhcc
Q 015080 379 RLELNWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 379 ~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
+++|||+|++ +++++|+++++||+++.
T Consensus 329 ~~~lG~~p~~-~l~e~l~~~~~~~~~~~ 355 (381)
T 1n7h_A 329 KEVLGWKPQV-GFEKLVKMMVDEDLELA 355 (381)
T ss_dssp HHHHCCCCCS-CHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcccC-CHHHHHHHHHHHHHhhc
Confidence 9999999988 89999999999998864
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=333.97 Aligned_cols=302 Identities=16% Similarity=0.195 Sum_probs=240.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC--CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|||||||||||++++++|+++ |++|++++|...... +. .++.++.+|++|.+++.+++++.++|+
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-----~~------~~~~~~~~D~~d~~~~~~~~~~~~~d~ 71 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-----VV------NSGPFEVVNALDFNQIEHLVEVHKITD 71 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-----HH------HSSCEEECCTTCHHHHHHHHHHTTCCE
T ss_pred ceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-----cc------CCCceEEecCCCHHHHHHHHhhcCCCE
Confidence 78999999999999999999999 899999998654321 11 246789999999999999996568999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCC-CCCCCCCCCCCCCChhHHHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPE-KMPITEETPQAPINPYGKAKKMA 227 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~-~~~~~e~~~~~~~~~Y~~sK~~~ 227 (413)
|||+||..... ...++...+++|+.++.++++++++.++++|||+||.++|+... ..+.+|+.+..|.++|+.+|+++
T Consensus 72 vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~ 150 (312)
T 2yy7_A 72 IYLMAALLSAT-AEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAG 150 (312)
T ss_dssp EEECCCCCHHH-HHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSSCBCCCCSHHHHHHHHH
T ss_pred EEECCccCCCc-hhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCccccCcCCCCchhHHHHHHH
Confidence 99999975431 23567788999999999999999999889999999999998753 34677888888899999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecc
Q 015080 228 EDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307 (413)
Q Consensus 228 e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i 307 (413)
|.+++.++.++|++++++||+.+|||...+.... ...+...+...+.++. +.+.+ ++++.++|+
T Consensus 151 e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~--------~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~i 214 (312)
T 2yy7_A 151 ERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGT--------TDYAVDIFYKAIADKK--YECFL------SSETKMPMM 214 (312)
T ss_dssp HHHHHHHHHHHCCEEECEEECEEECSSSCCCSCT--------TTHHHHHHHHHHHTSE--EEESS------CTTCCEEEE
T ss_pred HHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCch--------hhhHHHHHHHHHcCCC--eEEec------CCCceeeee
Confidence 9999999888899999999999999864221000 0134555555555543 44555 677889999
Q ss_pred cHHHHHHHHHHHHHhcCCC--CccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCC---CccccccCHHHHHHhc
Q 015080 308 DVNDLVDAHVKALERAQPK--KVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPG---DYAEVYSDPTKIRLEL 382 (413)
Q Consensus 308 ~v~Dva~a~~~~~~~~~~~--~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~---~~~~~~~d~~k~~~~l 382 (413)
|++|+|++++.+++++... .+++||+++ +.+|+.|+++.+.+.+| ..++.+.+.... ......+|++|++++|
T Consensus 215 ~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~-~~~s~~e~~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~l 292 (312)
T 2yy7_A 215 YMDDAIDATINIMKAPVEKIKIHSSYNLAA-MSFTPTEIANEIKKHIP-EFTITYEPDFRQKIADSWPASIDDSQAREDW 292 (312)
T ss_dssp EHHHHHHHHHHHHHSCGGGCCCSSCEECCS-EEECHHHHHHHHHTTCT-TCEEEECCCTHHHHHTTSCSSBCCHHHHHHH
T ss_pred eHHHHHHHHHHHHhCcccccccCceEEeCC-CccCHHHHHHHHHHHCC-CCceEeccCccccccccccccCCHHHHHHHc
Confidence 9999999999999865431 136999985 88999999999999998 334444332110 1112467999999999
Q ss_pred CcccccccHHHHHHHHHHHHH
Q 015080 383 NWTAKYTNLQESLEIAWRWQK 403 (413)
Q Consensus 383 G~~p~~~~~~e~l~~~~~~~~ 403 (413)
||+|++ +++|+|+++++||+
T Consensus 293 G~~p~~-~l~~~l~~~~~~~k 312 (312)
T 2yy7_A 293 DWKHTF-DLESMTKDMIEHLS 312 (312)
T ss_dssp CCCCCC-CHHHHHHHHHHHHC
T ss_pred CCCCCC-CHHHHHHHHHHHhC
Confidence 999998 89999999999985
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-42 Score=327.43 Aligned_cols=291 Identities=16% Similarity=0.115 Sum_probs=229.6
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
||+|||||||||||++++++|+++|++|++++|....... +.. .+++++.+|++|.+++.+++ .++|+|
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----l~~-----~~~~~~~~Dl~d~~~~~~~~--~~~d~v 81 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQR----LAY-----LEPECRVAEMLDHAGLERAL--RGLDGV 81 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGG----GGG-----GCCEEEECCTTCHHHHHHHT--TTCSEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhh----hcc-----CCeEEEEecCCCHHHHHHHH--cCCCEE
Confidence 3689999999999999999999999999999986543321 111 36889999999999999999 579999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCC--CCCCCCCCCCC----CChhHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEK--MPITEETPQAP----INPYGKA 223 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~--~~~~e~~~~~~----~~~Y~~s 223 (413)
|||||... ....++...+++|+.++.++++++++.++++|||+||.++|+.... .+ +|+.+..| .++|+.+
T Consensus 82 ih~a~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~-~E~~~~~p~~~~~~~Y~~s 158 (342)
T 2x4g_A 82 IFSAGYYP--SRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPG-HEGLFYDSLPSGKSSYVLC 158 (342)
T ss_dssp EEC--------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCB-CTTCCCSSCCTTSCHHHHH
T ss_pred EECCccCc--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCC-CCCCCCCccccccChHHHH
Confidence 99999753 2334567789999999999999999999999999999999987654 34 88888888 8899999
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCcee
Q 015080 224 KKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCV 303 (413)
Q Consensus 224 K~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 303 (413)
|+++|.+++.++++ |+++++|||+.+|||..... . +..++..+..+.. +.+ ++..
T Consensus 159 K~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~-------------~-~~~~~~~~~~~~~-~~~---------~~~~ 213 (342)
T 2x4g_A 159 KWALDEQAREQARN-GLPVVIGIPGMVLGELDIGP-------------T-TGRVITAIGNGEM-THY---------VAGQ 213 (342)
T ss_dssp HHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSC-------------S-TTHHHHHHHTTCC-CEE---------ECCE
T ss_pred HHHHHHHHHHHhhc-CCcEEEEeCCceECCCCccc-------------c-HHHHHHHHHcCCC-ccc---------cCCC
Confidence 99999999999887 99999999999999974100 1 2334444445443 222 2357
Q ss_pred eecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCC---------------C--
Q 015080 304 RDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRP---------------G-- 366 (413)
Q Consensus 304 ~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~---------------~-- 366 (413)
++|+|++|+|++++.+++++.. +++||+++++ +|+.|+++.+.+.+|.+.++ ..|.+. .
T Consensus 214 ~~~i~v~Dva~~~~~~~~~~~~--g~~~~v~~~~-~s~~e~~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~ 289 (342)
T 2x4g_A 214 RNVIDAAEAGRGLLMALERGRI--GERYLLTGHN-LEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRYRVSGQL 289 (342)
T ss_dssp EEEEEHHHHHHHHHHHHHHSCT--TCEEEECCEE-EEHHHHHHHHHHHHTCCCCE-EECHHHHHHHHHHHHC--------
T ss_pred cceeeHHHHHHHHHHHHhCCCC--CceEEEcCCc-ccHHHHHHHHHHHhCCCCCC-cCCHHHHHHHHHHHHHHHHhhCCC
Confidence 8999999999999999997665 4799999998 99999999999999987765 333210 0
Q ss_pred -----C-----ccccccCHHHHHHhcCc-ccccccHHHHHHHHHHHHHhc
Q 015080 367 -----D-----YAEVYSDPTKIRLELNW-TAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 367 -----~-----~~~~~~d~~k~~~~lG~-~p~~~~~~e~l~~~~~~~~~~ 405 (413)
. .....+|++|++++||| +| + +++++|+++++||+++
T Consensus 290 ~~~~~~~~~~~~~~~~~d~~k~~~~lG~~~p-~-~~~~~l~~~~~~~~~~ 337 (342)
T 2x4g_A 290 PLLDETAIEVMAGGQFLDGRKAREELGFFST-T-ALDDTLLRAIDWFRDN 337 (342)
T ss_dssp --------CCTTCCCCBCCHHHHHHHCCCCC-S-CHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhcCcccChHHHHHhCCCCCC-C-CHHHHHHHHHHHHHHc
Confidence 1 13567899999999999 99 6 8999999999999876
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=332.08 Aligned_cols=293 Identities=24% Similarity=0.341 Sum_probs=234.5
Q ss_pred CCCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcC
Q 015080 65 QHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSEN 144 (413)
Q Consensus 65 ~~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 144 (413)
+.+.+ |+|||||||||||++|+++|+++|++|++++|......+.. ..+ .++.++.+|++|.+++.+++++.
T Consensus 16 ~~~~~-~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---~~l----~~v~~~~~Dl~d~~~~~~~~~~~ 87 (330)
T 2pzm_A 16 PRGSH-MRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVL---PPV----AGLSVIEGSVTDAGLLERAFDSF 87 (330)
T ss_dssp STTTC-CEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGS---CSC----TTEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhh---hcc----CCceEEEeeCCCHHHHHHHHhhc
Confidence 35667 89999999999999999999999999999998544332111 111 46889999999999999999544
Q ss_pred CCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCC--CCCCCCCCCCCChhHH
Q 015080 145 AFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKM--PITEETPQAPINPYGK 222 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~--~~~e~~~~~~~~~Y~~ 222 (413)
++|+||||||..... ...+++ +++|+.++.++++++.+.++++||++||.++|+..... +++|+. .|.++|+.
T Consensus 88 ~~D~vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~--~~~~~Y~~ 162 (330)
T 2pzm_A 88 KPTHVVHSAAAYKDP-DDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPT--APFTSYGI 162 (330)
T ss_dssp CCSEEEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCC--CCCSHHHH
T ss_pred CCCEEEECCccCCCc-cccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCC--CCCChHHH
Confidence 899999999976543 222333 89999999999999999899999999999999876443 677776 67789999
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCce
Q 015080 223 AKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTC 302 (413)
Q Consensus 223 sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 302 (413)
+|+++|.+++.+ +++++++||+++|||+... .++..++..+..+.. + .+ ++.
T Consensus 163 sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~~~--------------~~~~~~~~~~~~~~~-~--~~------~~~- 214 (330)
T 2pzm_A 163 SKTAGEAFLMMS----DVPVVSLRLANVTGPRLAI--------------GPIPTFYKRLKAGQK-C--FC------SDT- 214 (330)
T ss_dssp HHHHHHHHHHTC----SSCEEEEEECEEECTTCCS--------------SHHHHHHHHHHTTCC-C--CE------ESC-
T ss_pred HHHHHHHHHHHc----CCCEEEEeeeeeECcCCCC--------------CHHHHHHHHHHcCCE-E--eC------CCC-
Confidence 999999999885 7999999999999997410 455555555544431 2 22 455
Q ss_pred eeecccHHHHHH-HHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHH---
Q 015080 303 VRDYIDVNDLVD-AHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKI--- 378 (413)
Q Consensus 303 ~~~~i~v~Dva~-a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~--- 378 (413)
.++++|++|+|+ +++.++..+. +++||+++++++|+.|+++.+.+.+|.+ ++...|.+. ......+|++|+
T Consensus 215 ~~~~i~~~Dva~~a~~~~~~~~~---g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~-~~~~~~~d~~k~~~~ 289 (330)
T 2pzm_A 215 VRDFLDMSDFLAIADLSLQEGRP---TGVFNVSTGEGHSIKEVFDVVLDYVGAT-LAEPVPVVA-PGADDVPSVVLDPSK 289 (330)
T ss_dssp EECEEEHHHHHHHHHHHTSTTCC---CEEEEESCSCCEEHHHHHHHHHHHHTCC-CSSCCCEEC-CCTTSCSEECBCCHH
T ss_pred EecceeHHHHHHHHHHHHhhcCC---CCEEEeCCCCCCCHHHHHHHHHHHhCCC-CceeCCCCc-chhhccCCHHHHhhc
Confidence 789999999999 9999998744 4799999999999999999999999987 544444333 344567788888
Q ss_pred --HHhcCcccccccHHHHHHHHHHHHHhc
Q 015080 379 --RLELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 379 --~~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
++ |||+|++ +++++|+++++||+++
T Consensus 290 ~l~~-lG~~p~~-~~~~~l~~~~~~~~~~ 316 (330)
T 2pzm_A 290 TETE-FGWKAKV-DFKDTITGQLAWYDKY 316 (330)
T ss_dssp HHHH-HCCCCCC-CHHHHHHHHHHHHHHH
T ss_pred hHHH-cCCcccC-CHHHHHHHHHHHHHhh
Confidence 76 9999988 9999999999999876
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=322.66 Aligned_cols=275 Identities=20% Similarity=0.179 Sum_probs=232.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++++++|+++|++|++++|. .+|++|.+++.++++..++|+||
T Consensus 13 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~------------------------~~Dl~d~~~~~~~~~~~~~d~vi 68 (292)
T 1vl0_A 13 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQ------------------------DLDITNVLAVNKFFNEKKPNVVI 68 (292)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT------------------------TCCTTCHHHHHHHHHHHCCSEEE
T ss_pred ceEEEECCCChHHHHHHHHHHhCCCeEEeccCc------------------------cCCCCCHHHHHHHHHhcCCCEEE
Confidence 899999999999999999999999999998763 28999999999999644799999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
||||.........++...+++|+.++.++++++++.++ +||++||.++|+.....+++|+.+..|.++|+.+|+++|.+
T Consensus 69 h~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS~~v~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~~ 147 (292)
T 1vl0_A 69 NCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGENF 147 (292)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCCSSCBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred ECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEechHHeECCCCCCCCCCCCCCCCccHHHHHHHHHHHH
Confidence 99997654333456788999999999999999999887 99999999999987777899999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHH
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~ 310 (413)
++.+. .+++++||+.||||. . .+++.++..+..+.+ +.+.+ ++.++|+|++
T Consensus 148 ~~~~~----~~~~~lR~~~v~G~~-~---------------~~~~~~~~~~~~~~~-~~~~~--------~~~~~~i~v~ 198 (292)
T 1vl0_A 148 VKALN----PKYYIVRTAWLYGDG-N---------------NFVKTMINLGKTHDE-LKVVH--------DQVGTPTSTV 198 (292)
T ss_dssp HHHHC----SSEEEEEECSEESSS-S---------------CHHHHHHHHHHHCSE-EEEES--------SCEECCEEHH
T ss_pred HHhhC----CCeEEEeeeeeeCCC-c---------------ChHHHHHHHHhcCCc-EEeec--------CeeeCCccHH
Confidence 98864 469999999999982 2 455666666655544 55543 3678999999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCC-----CCCccccccCHHHHHHhcCcc
Q 015080 311 DLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRR-----PGDYAEVYSDPTKIRLELNWT 385 (413)
Q Consensus 311 Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-----~~~~~~~~~d~~k~~~~lG~~ 385 (413)
|+|++++.+++.+ . +++||+++++++|+.|+++.+.+.+|.+.++...+.. ........+|++|++++|||+
T Consensus 199 Dva~~~~~~~~~~-~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 275 (292)
T 1vl0_A 199 DLARVVLKVIDEK-N--YGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDI 275 (292)
T ss_dssp HHHHHHHHHHHHT-C--CEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCC
T ss_pred HHHHHHHHHHhcC-C--CcEEEecCCCCccHHHHHHHHHHHhCCCCceeeccccccCcccCCCccccccHHHHHHHcCCC
Confidence 9999999999876 3 3799999999999999999999999988776554432 123345778999999999999
Q ss_pred cccccHHHHHHHHHHHHHh
Q 015080 386 AKYTNLQESLEIAWRWQKS 404 (413)
Q Consensus 386 p~~~~~~e~l~~~~~~~~~ 404 (413)
|+ +++++|+++++||++
T Consensus 276 p~--~~~~~l~~~~~~~~~ 292 (292)
T 1vl0_A 276 TR--EWKESLKEYIDLLQM 292 (292)
T ss_dssp CC--BHHHHHHHHHHHHTC
T ss_pred CC--CHHHHHHHHHHHhcC
Confidence 97 799999999999963
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=330.11 Aligned_cols=278 Identities=14% Similarity=0.158 Sum_probs=229.1
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
||+||||| +||||++|+++|+++|++|++++|..... ..++.++.+|++|.+++.++++ .++|+|
T Consensus 3 ~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~-------------~~~~~~~~~Dl~d~~~~~~~~~-~~~d~v 67 (286)
T 3gpi_A 3 LSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM-------------PAGVQTLIADVTRPDTLASIVH-LRPEIL 67 (286)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC-------------CTTCCEEECCTTCGGGCTTGGG-GCCSEE
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc-------------ccCCceEEccCCChHHHHHhhc-CCCCEE
Confidence 47899999 59999999999999999999999865432 2578999999999999998885 359999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAED 229 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 229 (413)
||+||... .++...+++|+.++.++++++++.++++|||+||.++||.....+++|+.+..|.+.|+.+|.++|.
T Consensus 68 ih~a~~~~-----~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~ 142 (286)
T 3gpi_A 68 VYCVAASE-----YSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDEDTPPIAKDFSGKRMLEAEA 142 (286)
T ss_dssp EECHHHHH-----HC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTTSCCCCCSHHHHHHHHHHH
T ss_pred EEeCCCCC-----CCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCCCCCCCCChhhHHHHHHHH
Confidence 99999642 3456778899999999999999988999999999999998888889999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccH
Q 015080 230 IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 230 ~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
+ +.+ ++++++||+.+|||+.. .+ +..+.. .. . .+ +++..++|+|+
T Consensus 143 ~-~~~-----~~~~ilR~~~v~G~~~~---------------~~----~~~~~~-~~-~--~~------~~~~~~~~i~v 187 (286)
T 3gpi_A 143 L-LAA-----YSSTILRFSGIYGPGRL---------------RM----IRQAQT-PE-Q--WP------ARNAWTNRIHR 187 (286)
T ss_dssp H-GGG-----SSEEEEEECEEEBTTBC---------------HH----HHHTTC-GG-G--SC------SSBCEECEEEH
T ss_pred H-Hhc-----CCeEEEecccccCCCch---------------hH----HHHHHh-cc-c--CC------CcCceeEEEEH
Confidence 8 553 89999999999998632 22 333333 22 1 12 67888999999
Q ss_pred HHHHHHHHHHHHhcC-CCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCccccc
Q 015080 310 NDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKY 388 (413)
Q Consensus 310 ~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 388 (413)
+|+|++++.+++++. ...+++||+++++++|+.|+++.+.+.+|.+.++...+ .......+|++|++ +|||+|++
T Consensus 188 ~Dva~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~---~~~~~~~~d~~k~~-~lG~~p~~ 263 (286)
T 3gpi_A 188 DDGAAFIAYLIQQRSHAVPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATP---PVQGNKKLSNARLL-ASGYQLIY 263 (286)
T ss_dssp HHHHHHHHHHHHHHTTSCCCSEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCCC---CBCSSCEECCHHHH-HTTCCCSS
T ss_pred HHHHHHHHHHHhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCCc---ccCCCeEeeHHHHH-HcCCCCcC
Confidence 999999999999841 11247999999999999999999999999887765544 34456789999998 99999998
Q ss_pred ccHHHHHHHHHHHHHhcc
Q 015080 389 TNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 389 ~~~~e~l~~~~~~~~~~~ 406 (413)
++++|+|+++++|++...
T Consensus 264 ~~l~e~l~~~~~~~~~~~ 281 (286)
T 3gpi_A 264 PDYVSGYGALLAAMREGH 281 (286)
T ss_dssp CSHHHHHHHHHHHHTC--
T ss_pred CcHHHHHHHHHHHHhccc
Confidence 679999999999997654
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-42 Score=329.84 Aligned_cols=301 Identities=22% Similarity=0.303 Sum_probs=242.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC-CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---CCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---NAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---~~~ 146 (413)
|+|||||||||||++|+++|+++| ++|++++|...... ...+ .++. +.+|++|.+.+.++++. .++
T Consensus 47 ~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~-------~~~~-~~~d~~~~~~~~~~~~~~~~~~~ 116 (357)
T 2x6t_A 47 RMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNL-------VDLN-IADYMDKEDFLIQIMAGEEFGDV 116 (357)
T ss_dssp -CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG--GGGT-------TTSC-CSEEEEHHHHHHHHHTTCCCSSC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch--hhcc-------cCce-EeeecCcHHHHHHHHhhcccCCC
Confidence 789999999999999999999999 99999987543321 1111 1223 67999999999998853 269
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHH
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKM 226 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~ 226 (413)
|+||||||.... ...+++..+++|+.++.++++++++.++ +||++||.++|+.....+++|+.+..|.++|+.+|++
T Consensus 117 d~Vih~A~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~~ 193 (357)
T 2x6t_A 117 EAIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVFGYSKFL 193 (357)
T ss_dssp CEEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGCSCSSCCCSSGGGCCCSSHHHHHHHH
T ss_pred CEEEECCcccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcchHHhCCCCCCCcCCcCCCCCCChhHHHHHH
Confidence 999999997643 3456788999999999999999999988 9999999999998777789999998999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCce-eee
Q 015080 227 AEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTC-VRD 305 (413)
Q Consensus 227 ~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~-~~~ 305 (413)
+|.+++.++.+.|+++++|||+.||||+..... ....++..++..+..+.+ +.+.+ ++.+ .++
T Consensus 194 ~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~ 257 (357)
T 2x6t_A 194 FDEYVRQILPEANSQIVGFRYFNVYGPREGHKG---------SMASVAFHLNTQLNNGES-PKLFE------GSENFKRD 257 (357)
T ss_dssp HHHHHHHHGGGCSSCEEEEEECEEESSSCTTCG---------GGSCHHHHHHHHHHTTCC-CEEET------TGGGCEEC
T ss_pred HHHHHHHHHHHcCCCEEEEecCeEECCCCCCCc---------ccchHHHHHHHHHHcCCC-cEEeC------CCCcceEc
Confidence 999999999888999999999999999743210 011456667777776665 66666 6778 899
Q ss_pred cccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCC-ceeEecCCCC--CCccccccCHHHHHHhc
Q 015080 306 YIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSAN-IKVIYEPRRP--GDYAEVYSDPTKIRLEL 382 (413)
Q Consensus 306 ~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~--~~~~~~~~d~~k~~~~l 382 (413)
|+|++|+|++++.+++.+. +++||+++++++|+.|+++.+.+.+|.+ .+....+... .......+|++|+++ |
T Consensus 258 ~i~v~Dva~ai~~~~~~~~---~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-l 333 (357)
T 2x6t_A 258 FVYVGDVADVNLWFLENGV---SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRA-A 333 (357)
T ss_dssp EEEHHHHHHHHHHHHHHCC---CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEECCCGGGTTSCCSBCCCCCHHHHH-T
T ss_pred cEEHHHHHHHHHHHHhcCC---CCeEEecCCCcccHHHHHHHHHHHcCCCCceecCCCcccccccccccccCHHHHHH-c
Confidence 9999999999999999766 3799999999999999999999999987 3332222210 112345679999985 9
Q ss_pred Cc-ccccccHHHHHHHHHHHHHhc
Q 015080 383 NW-TAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 383 G~-~p~~~~~~e~l~~~~~~~~~~ 405 (413)
|| .|.+ +++|+|+++++||+++
T Consensus 334 G~~~~~~-~l~e~l~~~~~~~~~~ 356 (357)
T 2x6t_A 334 GYDKPFK-TVAEGVTEYMAWLNRD 356 (357)
T ss_dssp TCCCCCC-CHHHHHHHHHHHHC--
T ss_pred CCCCCCC-CHHHHHHHHHHHHhhc
Confidence 99 6777 9999999999999754
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-42 Score=324.12 Aligned_cols=283 Identities=16% Similarity=0.163 Sum_probs=234.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++++++|+ +|++|++++|... ++.+|++|.+++.++++..++|+||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~--------------------~~~~D~~d~~~~~~~~~~~~~d~vi 59 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK--------------------EFCGDFSNPKGVAETVRKLRPDVIV 59 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS--------------------SSCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc--------------------cccccCCCHHHHHHHHHhcCCCEEE
Confidence 479999999999999999999 8999999987431 2458999999999999655699999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
|+||.........+++..+++|+.++.++++++++.++ ++||+||.++|+.....+++|+.+..|.+.|+.+|+++|.+
T Consensus 60 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 138 (299)
T 1n2s_A 60 NAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKA 138 (299)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTTSCCCCSSHHHHHHHHHHHH
T ss_pred ECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccEEeCCCCCCCCCCCCCCCccHHHHHHHHHHHH
Confidence 99997654444567888999999999999999998887 89999999999988777899999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHH
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~ 310 (413)
++.++ .+++++||+.+|||+.. .+++.++..+..+.+ +.+.| ++.++|+|++
T Consensus 139 ~~~~~----~~~~ilRp~~v~G~~~~---------------~~~~~~~~~~~~~~~-~~~~~--------~~~~~~i~v~ 190 (299)
T 1n2s_A 139 LQDNC----PKHLIFRTSWVYAGKGN---------------NFAKTMLRLAKERQT-LSVIN--------DQYGAPTGAE 190 (299)
T ss_dssp HHHHC----SSEEEEEECSEECSSSC---------------CHHHHHHHHHHHCSE-EEEEC--------SCEECCEEHH
T ss_pred HHHhC----CCeEEEeeeeecCCCcC---------------cHHHHHHHHHhcCCC-EEeec--------CcccCCeeHH
Confidence 98864 38999999999998642 456666666666655 55544 3778999999
Q ss_pred HHHHHHHHHHHhcC--CCCccEEEecCCCcccHHHHHHHHHHHcCCCc------eeEecCC-----CCCCccccccCHHH
Q 015080 311 DLVDAHVKALERAQ--PKKVGIYNVGTGKGRSVKEFVEACKKATSANI------KVIYEPR-----RPGDYAEVYSDPTK 377 (413)
Q Consensus 311 Dva~a~~~~~~~~~--~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~------~~~~~~~-----~~~~~~~~~~d~~k 377 (413)
|+|++++.+++++. ...+++||+++++++|+.|+++.+.+.+|.+. .+...+. .........+|++|
T Consensus 191 Dva~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k 270 (299)
T 1n2s_A 191 LLADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEK 270 (299)
T ss_dssp HHHHHHHHHHHHHHHCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHH
T ss_pred HHHHHHHHHHHHhccccccCceEEEeCCCCCCHHHHHHHHHHHhCCCccccccccccccccccccCcCCCCCceeeeHHH
Confidence 99999999998762 20237999999999999999999999998762 3333322 11223457889999
Q ss_pred HHHhcCcccccccHHHHHHHHHHHHHhc
Q 015080 378 IRLELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 378 ~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
++++|||+|+ +++|+|+++++||+++
T Consensus 271 ~~~~lG~~p~--~~~~~l~~~~~~~~~~ 296 (299)
T 1n2s_A 271 FQRNFDLILP--QWELGVKRMLTEMFTT 296 (299)
T ss_dssp HHHHHTCCCC--BHHHHHHHHHHHHHSC
T ss_pred HHHhcCCCCC--CHHHHHHHHHHHHHhc
Confidence 9999999997 7999999999999865
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=325.69 Aligned_cols=300 Identities=22% Similarity=0.312 Sum_probs=224.1
Q ss_pred EEEEEcCCChHHHHHHHHHHHCC-CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---CCCc
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---NAFD 147 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---~~~d 147 (413)
+|||||||||||++++++|+++| ++|++++|...... ...+. ++. +.+|++|.+.+.++++. .++|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~-------~~~-~~~d~~~~~~~~~~~~~~~~~~~d 70 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLV-------DLN-IADYMDKEDFLIQIMAGEEFGDVE 70 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHHH-------TSC-CSEEEEHHHHHHHHHTTCCCSSCC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhcC-------cce-eccccccHHHHHHHHhccccCCCc
Confidence 48999999999999999999999 99999987543321 11111 122 67999999999998853 1599
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHH
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMA 227 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~ 227 (413)
+||||||.... ...++...+++|+.++.++++++++.++ +||++||.++|+.....+++|+.+..|.++|+.+|.++
T Consensus 71 ~vi~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~~~ 147 (310)
T 1eq2_A 71 AIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLF 147 (310)
T ss_dssp EEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHHHHH
T ss_pred EEEECcccccC--cccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeHHHhCCCCCCCCCCCCCCCCCChhHHHHHHH
Confidence 99999997643 4457888999999999999999999988 99999999999987766889999889999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCce-eeec
Q 015080 228 EDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTC-VRDY 306 (413)
Q Consensus 228 e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~-~~~~ 306 (413)
|.+++.++++.|++++++||+.+|||+.... .....+++.++..+..+.+ +.+.+ ++.+ .++|
T Consensus 148 e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~------~g~~~~~~~ 211 (310)
T 1eq2_A 148 DEYVRQILPEANSQIVGFRYFNVYGPREGHK---------GSMASVAFHLNTQLNNGES-PKLFE------GSENFKRDF 211 (310)
T ss_dssp HHHHHHHGGGCSSCEEEEEECEEESSSCGGG---------GGGSCHHHHHHHHHHC--------------------CBCE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcEECcCCCCC---------CccchHHHHHHHHHHcCCC-cEEec------CCCcceEcc
Confidence 9999999888899999999999999974310 0011566777777777665 55555 6778 8999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCC-ceeEecCCCC--CCccccccCHHHHHHhcC
Q 015080 307 IDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSAN-IKVIYEPRRP--GDYAEVYSDPTKIRLELN 383 (413)
Q Consensus 307 i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~--~~~~~~~~d~~k~~~~lG 383 (413)
+|++|+|++++.+++.+. +++||+++++++|+.|+++.+.+.+|.+ .+....+... .......+|++|+++ ||
T Consensus 212 i~v~Dva~~~~~~~~~~~---~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lG 287 (310)
T 1eq2_A 212 VYVGDVADVNLWFLENGV---SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRA-AG 287 (310)
T ss_dssp EEHHHHHHHHHHHHHHCC---CEEEEESCSCCBCHHHHHHHC---------------------CCCSCCBCCHHHHH-TT
T ss_pred EEHHHHHHHHHHHHhcCC---CCeEEEeCCCccCHHHHHHHHHHHcCCCCceeCCCChhhhcccccccccchHHHHh-cC
Confidence 999999999999999766 3799999999999999999999999987 3222222211 112345678999975 99
Q ss_pred c-ccccccHHHHHHHHHHHHHhc
Q 015080 384 W-TAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 384 ~-~p~~~~~~e~l~~~~~~~~~~ 405 (413)
| .|.+ +++++|+++++||+++
T Consensus 288 ~~~~~~-~l~~~l~~~~~~~~~~ 309 (310)
T 1eq2_A 288 YDKPFK-TVAEGVTEYMAWLNRD 309 (310)
T ss_dssp CCCCCC-CHHHHHHHHHHHTC--
T ss_pred CCCCCC-CHHHHHHHHHHHHHhc
Confidence 9 7777 9999999999999764
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=322.78 Aligned_cols=288 Identities=22% Similarity=0.239 Sum_probs=229.5
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
||+|||||||||||++++++|+++|++|++++|......+ .+..+ .++.++.+|++|.+++.++++..++|+|
T Consensus 21 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~l~~~----~~~~~~~~Dl~d~~~~~~~~~~~~~D~v 93 (333)
T 2q1w_A 21 MKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRRE---HLKDH----PNLTFVEGSIADHALVNQLIGDLQPDAV 93 (333)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG---GSCCC----TTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchh---hHhhc----CCceEEEEeCCCHHHHHHHHhccCCcEE
Confidence 4899999999999999999999999999999986443221 11111 4688999999999999999965569999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecC----CCCCCCCCCCCCCCCC-ChhHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYG----EPEKMPITEETPQAPI-NPYGKAK 224 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~----~~~~~~~~e~~~~~~~-~~Y~~sK 224 (413)
|||||..... ...+++ +++|+.++.++++++.+.++++||++||.++|+ .... +++|+. .|. ++|+.+|
T Consensus 94 ih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~-~~~E~~--~p~~~~Y~~sK 167 (333)
T 2q1w_A 94 VHTAASYKDP-DDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPV-RLDHPR--NPANSSYAISK 167 (333)
T ss_dssp EECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSB-CTTSCC--CCTTCHHHHHH
T ss_pred EECceecCCC-ccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCC-CcCCCC--CCCCCchHHHH
Confidence 9999976543 222333 899999999999999999889999999999998 5544 777776 566 8999999
Q ss_pred HHHHHHHHH-HHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCcee
Q 015080 225 KMAEDIILD-FSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCV 303 (413)
Q Consensus 225 ~~~e~~~~~-~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 303 (413)
+++|.+++. ++ +++++||+.+|||+.. ..+++.++..+..+.. +. .+...
T Consensus 168 ~~~E~~~~~s~~-----~~~ilR~~~v~gp~~~--------------~~~~~~~~~~~~~~~~-~~---------~~~~~ 218 (333)
T 2q1w_A 168 SANEDYLEYSGL-----DFVTFRLANVVGPRNV--------------SGPLPIFFQRLSEGKK-CF---------VTKAR 218 (333)
T ss_dssp HHHHHHHHHHTC-----CEEEEEESEEESTTCC--------------SSHHHHHHHHHHTTCC-CE---------EEECE
T ss_pred HHHHHHHHhhhC-----CeEEEeeceEECcCCc--------------CcHHHHHHHHHHcCCe-ee---------CCCce
Confidence 999999988 64 7999999999999721 1455656655544432 21 13457
Q ss_pred eecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCC----CCccccccCHHHHH
Q 015080 304 RDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRP----GDYAEVYSDPTKIR 379 (413)
Q Consensus 304 ~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----~~~~~~~~d~~k~~ 379 (413)
++++|++|+|++++.++..+. +++||+++++++|+.|+++.+.+.+|.+ ++...+... .......+|++|++
T Consensus 219 ~~~i~v~Dva~ai~~~~~~~~---g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~ 294 (333)
T 2q1w_A 219 RDFVFVKDLARATVRAVDGVG---HGAYHFSSGTDVAIKELYDAVVEAMALP-SYPEPEIRELGPDDAPSILLDPSRTIQ 294 (333)
T ss_dssp ECEEEHHHHHHHHHHHHTTCC---CEEEECSCSCCEEHHHHHHHHHHHTTCS-SCCCCEEEECCTTSCCCCCBCCHHHHH
T ss_pred EeeEEHHHHHHHHHHHHhcCC---CCEEEeCCCCCccHHHHHHHHHHHhCCC-CceeCCCCCcccccccccccCCHHHHH
Confidence 899999999999999998655 4799999999999999999999999987 433322211 01145678999999
Q ss_pred HhcCcccccccHHHHHHHHHHHHHhc
Q 015080 380 LELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 380 ~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
+. ||+|++ +++++|+++++||+++
T Consensus 295 ~~-G~~p~~-~~~~~l~~~~~~~~~~ 318 (333)
T 2q1w_A 295 DF-GKIEFT-PLKETVAAAVAYFREY 318 (333)
T ss_dssp HH-CCCCCC-CHHHHHHHHHHHHHHH
T ss_pred hc-CCCcCC-CHHHHHHHHHHHHHHH
Confidence 88 999988 8999999999999876
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=321.85 Aligned_cols=301 Identities=20% Similarity=0.251 Sum_probs=237.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHC--CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
+|||||||||||++++++|+++ |++|++++|..... .++.++.+|++|++++.+++++.++|+|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~--------------~~~~~~~~D~~d~~~~~~~~~~~~~d~v 66 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT--------------GGIKFITLDVSNRDEIDRAVEKYSIDAI 66 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCC--------------TTCCEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccc--------------cCceEEEecCCCHHHHHHHHhhcCCcEE
Confidence 4899999999999999999998 89999998754332 1467889999999999999976689999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCC-CCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEP-EKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~-~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
||+||.... ....++...+++|+.++.++++++++.++++||++||.++|+.. ...+.+|+.+..|.++|+.||+++|
T Consensus 67 ih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e 145 (317)
T 3ajr_A 67 FHLAGILSA-KGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAE 145 (317)
T ss_dssp EECCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSSSCCCCCSHHHHHHHHHH
T ss_pred EECCcccCC-ccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCccccccCCCCchHHHHHHHHH
Confidence 999997532 12346778899999999999999999999999999999999865 3346778888888999999999999
Q ss_pred HHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeeccc
Q 015080 229 DIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308 (413)
Q Consensus 229 ~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~ 308 (413)
.+++.+++++|++++++||+.+||+...+..+. ...+...+...+.++. +.+.+ +++..++|+|
T Consensus 146 ~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~i~ 209 (317)
T 3ajr_A 146 LLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGT--------TDYAVEIFYYAVKREK--YKCYL------APNRALPMMY 209 (317)
T ss_dssp HHHHHHHHHHCCEEEEEEECEEECSSSCCCSCS--------STHHHHHHHHHHTTCC--EEECS------CTTCCEEEEE
T ss_pred HHHHHHHHhcCCeEEEEecCcEeccCCCCCCcc--------hhHHHHHHHHHHhCCC--ceeec------CccceeeeeE
Confidence 999999888899999999999999763211000 0134444544444433 44444 6778899999
Q ss_pred HHHHHHHHHHHHHhcCCC--CccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCC---CCccccccCHHHHHHhcC
Q 015080 309 VNDLVDAHVKALERAQPK--KVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRP---GDYAEVYSDPTKIRLELN 383 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~~~--~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~---~~~~~~~~d~~k~~~~lG 383 (413)
++|+|++++.+++++... .+++||+++ +.+|+.|+++.+.+.+|. .++.+.+... .......+|++|++++||
T Consensus 210 v~Dva~a~~~~l~~~~~~~~~g~~~~i~~-~~~s~~e~~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG 287 (317)
T 3ajr_A 210 MPDALKALVDLYEADRDKLVLRNGYNVTA-YTFTPSELYSKIKERIPE-FEIEYKEDFRDKIAATWPESLDSSEASNEWG 287 (317)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCSCEECCS-EEECHHHHHHHHHTTCCS-CCEEECCCHHHHHHTTSCSCBCCHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCccccccCceEecCC-ccccHHHHHHHHHHHCCc-cccccccccchhhccccccccCHHHHHHHcC
Confidence 999999999999865321 236999985 689999999999999983 3333333200 011124679999999999
Q ss_pred cccccccHHHHHHHHHHHHHhcc
Q 015080 384 WTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 384 ~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
|+|++ +++++|+++++|++++.
T Consensus 288 ~~p~~-~~~~~l~~~~~~~~~~~ 309 (317)
T 3ajr_A 288 FSIEY-DLDRTIDDMIDHISEKL 309 (317)
T ss_dssp CCCCC-CHHHHHHHHHHHHHHHT
T ss_pred CCCCC-CHHHHHHHHHHHHHhhh
Confidence 99998 89999999999998874
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-42 Score=325.47 Aligned_cols=293 Identities=17% Similarity=0.138 Sum_probs=206.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++++++|+++|++|++++|.... .+ ++.+|++|++++.++++..++|+||
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------------~~--~~~~Dl~d~~~~~~~~~~~~~d~vi 65 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR---------------PK--FEQVNLLDSNAVHHIIHDFQPHVIV 65 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CHHHHHHHCCSEEE
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC---------------CC--eEEecCCCHHHHHHHHHhhCCCEEE
Confidence 789999999999999999999999999999874321 12 6789999999999998655699999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
||||......+..++...+++|+.++.++++++.+.++ +|||+||.++|+. ...+++|+.+..|.+.|+.+|+++|.+
T Consensus 66 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~~~-~~~~~~E~~~~~~~~~Y~~sK~~~e~~ 143 (315)
T 2ydy_A 66 HCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA-FLIYISSDYVFDG-TNPPYREEDIPAPLNLYGKTKLDGEKA 143 (315)
T ss_dssp ECC-------------------CHHHHHHHHHHHHHTC-EEEEEEEGGGSCS-SSCSBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred ECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchHHHcCC-CCCCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 99998655444566778899999999999999999886 9999999999987 556789999888999999999999999
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHh-ccccceeEecccccCCCCceeeecccH
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAAR-GIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
++.+ ++++++|||+.||||...+. ..++..++..+. .+.+ +.+. +++.++++|+
T Consensus 144 ~~~~----~~~~~~lR~~~v~G~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~i~v 198 (315)
T 2ydy_A 144 VLEN----NLGAAVLRIPILYGEVEKLE------------ESAVTVMFDKVQFSNKS-ANMD--------HWQQRFPTHV 198 (315)
T ss_dssp HHHH----CTTCEEEEECSEECSCSSGG------------GSTTGGGHHHHHCCSSC-EEEE--------CSSBBCCEEH
T ss_pred HHHh----CCCeEEEeeeeeeCCCCccc------------ccHHHHHHHHHHhcCCC-eeec--------cCceECcEEH
Confidence 9885 56789999999999875311 023333445554 4444 4443 3467899999
Q ss_pred HHHHHHHHHHHHhc--CCCCccEEEecCCCcccHHHHHHHHHHHcCCCce-eEecCC----CCCCccccccCHHHHHHhc
Q 015080 310 NDLVDAHVKALERA--QPKKVGIYNVGTGKGRSVKEFVEACKKATSANIK-VIYEPR----RPGDYAEVYSDPTKIRLEL 382 (413)
Q Consensus 310 ~Dva~a~~~~~~~~--~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~~----~~~~~~~~~~d~~k~~~~l 382 (413)
+|+|++++.++.+. ....+++||+++++++|+.|+++.+.+.+|.+.+ +...+. .........+|++|++++
T Consensus 199 ~Dva~a~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~- 277 (315)
T 2ydy_A 199 KDVATVCRQLAEKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETL- 277 (315)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCCCSSSCCCSBCCBCCHHHHHT-
T ss_pred HHHHHHHHHHHHhhccccCCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccccccccCCCcccccchHHHHhc-
Confidence 99999999999864 1123479999999999999999999999998765 333332 112334577899999987
Q ss_pred CcccccccHHHHHHHHHHHHHhccCCC
Q 015080 383 NWTAKYTNLQESLEIAWRWQKSHRGGY 409 (413)
Q Consensus 383 G~~p~~~~~~e~l~~~~~~~~~~~~~~ 409 (413)
||+|++ +++++|+++++||+++..++
T Consensus 278 G~~p~~-~~~~~l~~~~~~~~~~~~~~ 303 (315)
T 2ydy_A 278 GIGQRT-PFRIGIKESLWPFLIDKRWR 303 (315)
T ss_dssp TCCCCC-CHHHHHHHHHGGGCC-----
T ss_pred CCCCCC-CHHHHHHHHHHHHccchhhh
Confidence 999998 79999999999998875443
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-41 Score=348.81 Aligned_cols=314 Identities=20% Similarity=0.248 Sum_probs=246.5
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHH-HHHHhhcCCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKA-VNKFFSENAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~-~~~~~~~~~~d 147 (413)
||+|||||||||||++++++|+++ |++|++++|......... . ..++.++.+|++|.++ +.+++ .++|
T Consensus 315 ~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~-------~-~~~v~~v~~Dl~d~~~~~~~~~--~~~D 384 (660)
T 1z7e_A 315 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-------N-HPHFHFVEGDISIHSEWIEYHV--KKCD 384 (660)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGT-------T-CTTEEEEECCTTTCHHHHHHHH--HHCS
T ss_pred CceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhc-------c-CCceEEEECCCCCcHHHHHHhh--cCCC
Confidence 389999999999999999999998 899999998654432111 1 2578999999999765 77777 4799
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC-------CCCChh
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ-------APINPY 220 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~-------~~~~~Y 220 (413)
+||||||...+.....++...+++|+.++.++++++++.+ ++||++||.++|+.....+++|+.+. .|.+.|
T Consensus 385 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~~~Y 463 (660)
T 1z7e_A 385 VVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIY 463 (660)
T ss_dssp EEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTTHHH
T ss_pred EEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-CEEEEEecHHHcCCCCCcccCCCccccccCcccCCCCCc
Confidence 9999999765433445677889999999999999999988 89999999999998776678887752 456689
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCC
Q 015080 221 GKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300 (413)
Q Consensus 221 ~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 300 (413)
+.||+++|.+++.++++.|++++++||+.||||+....... ....+.+++.++..+..+.+ +.+.+ ++
T Consensus 464 ~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~-~~~~g------~g 531 (660)
T 1z7e_A 464 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAA-----RIGSSRAITQLILNLVEGSP-IKLID------GG 531 (660)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHH-----TTTCSCHHHHHHHHHHHTCC-EEEEG------GG
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccc-----cccccchHHHHHHHHHcCCC-cEEeC------CC
Confidence 99999999999999888899999999999999974310000 00001456666666666665 66666 67
Q ss_pred ceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC-cccHHHHHHHHHHHcCCCceeEecCCC--------------
Q 015080 301 TCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK-GRSVKEFVEACKKATSANIKVIYEPRR-------------- 364 (413)
Q Consensus 301 ~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~-~~s~~e~~~~i~~~~g~~~~~~~~~~~-------------- 364 (413)
++.++|+|++|+|++++.+++.+.. ..+++||+++++ ++|+.|+++.+.+.+|.+......|..
T Consensus 532 ~~~~~~i~v~Dva~ai~~~l~~~~~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~ 611 (660)
T 1z7e_A 532 KQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGK 611 (660)
T ss_dssp CCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECTHHHHCT
T ss_pred CeEEEEEEHHHHHHHHHHHHhCccccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhccccccc
Confidence 8889999999999999999986531 134799999886 899999999999999864322111211
Q ss_pred -CCCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccC
Q 015080 365 -PGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 365 -~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 407 (413)
........+|++|++++|||+|++ +++++|+++++||+++..
T Consensus 612 ~~~~~~~~~~d~~ka~~~LG~~p~~-~l~egl~~~i~~~~~~~~ 654 (660)
T 1z7e_A 612 GYQDVEHRKPSIRNAHRCLDWEPKI-DMQETIDETLDFFLRTVD 654 (660)
T ss_dssp TCCCCSCCCBCCHHHHHHHCCCCCC-CHHHHHHHHHHHHHTTSC
T ss_pred cccchhhcccCHHHHHHhcCCCccC-cHHHHHHHHHHHHHhhcc
Confidence 112345678999999999999998 899999999999988753
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=318.00 Aligned_cols=305 Identities=18% Similarity=0.210 Sum_probs=241.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCC-------CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHH
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDS-------YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNK 139 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 139 (413)
+.+ |+||||||+||||++|+++|+++| ++|++++|....... ....++.++.+|++|++++.+
T Consensus 12 ~~~-~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~ 81 (342)
T 2hrz_A 12 FQG-MHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA---------GFSGAVDARAADLSAPGEAEK 81 (342)
T ss_dssp CSC-EEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT---------TCCSEEEEEECCTTSTTHHHH
T ss_pred ccC-CEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc---------ccCCceeEEEcCCCCHHHHHH
Confidence 345 899999999999999999999999 899999986543321 013578899999999999999
Q ss_pred HhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-----CCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 140 FFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-----VDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 140 ~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-----~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
+++ .++|+||||||.... ...+++...+++|+.++.++++++++.+ +++||++||.++|+.....+++|+.+.
T Consensus 82 ~~~-~~~d~vih~A~~~~~-~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~ 159 (342)
T 2hrz_A 82 LVE-ARPDVIFHLAAIVSG-EAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHT 159 (342)
T ss_dssp HHH-TCCSEEEECCCCCHH-HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTTCCC
T ss_pred HHh-cCCCEEEECCccCcc-cccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCCCCC
Confidence 885 489999999997532 2235677889999999999999998876 789999999999987655688999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceec-CCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 215 APINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIG-SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
.|.++|+.||+++|.+++.++.+.+++.+++|++.+|| |+... .+ ...++..++..+..+.+ +.+++
T Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~------~~----~~~~~~~~~~~~~~~~~-~~~~~- 227 (342)
T 2hrz_A 160 TPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPN------AA----ASGFFSNILREPLVGQE-AVLPV- 227 (342)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCC------CS----GGGHHHHHHHHHHTTCC-EEECS-
T ss_pred CCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCc------ch----hHHHHHHHHHHHhcCCC-eeccC-
Confidence 99999999999999999999988899999999999998 65311 00 01456666666666654 44444
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhcCC--CCccEEEecCCCcccHHHHHHHHHHHcCCCc--eeEecCCCCC---
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERAQP--KKVGIYNVGTGKGRSVKEFVEACKKATSANI--KVIYEPRRPG--- 366 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~--~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~--~~~~~~~~~~--- 366 (413)
.+....+++|++|+|++++.+++.+.. ..+++||++ ++.+|+.|+++.+.+.+|.+. .+...+....
T Consensus 228 -----~~~~~~~~~~v~Dva~~~~~~~~~~~~~~~~~~~~ni~-g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~ 301 (342)
T 2hrz_A 228 -----PESIRHWHASPRSAVGFLIHGAMIDVEKVGPRRNLSMP-GLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRM 301 (342)
T ss_dssp -----CTTCEEEEECHHHHHHHHHHHHHSCHHHHCSCCEEECC-CEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHHH
T ss_pred -----CCccceeeEehHHHHHHHHHHHhccccccCCccEEEcC-CCCCCHHHHHHHHHHHcCcccccceeeccCcchhhh
Confidence 456677899999999999999986432 123699995 678999999999999999765 2333332110
Q ss_pred -CccccccCHHHHHHhcCcccccccHHHHHHHHHHHHH
Q 015080 367 -DYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQK 403 (413)
Q Consensus 367 -~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~ 403 (413)
......+|++|+++ |||+|++ +++|+|+++++||+
T Consensus 302 ~~~~~~~~d~~k~~~-lG~~p~~-~l~e~l~~~~~~~~ 337 (342)
T 2hrz_A 302 CEGWAPGFEAKRARE-LGFTAES-SFEEIIQVHIEDEL 337 (342)
T ss_dssp HTTSCCCBCCHHHHH-TTCCCCS-SHHHHHHHHHHHHS
T ss_pred hcccccccChHHHHH-cCCCCCC-CHHHHHHHHHHHhc
Confidence 01113579999998 9999988 89999999999997
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=316.34 Aligned_cols=306 Identities=17% Similarity=0.130 Sum_probs=228.8
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEE-EccCCCHHHHHHHhhcCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFI-YADLGDAKAVNKFFSENA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~ 145 (413)
..+ |+||||||+||||++++++|+++|++|++++|+..+...+.+.+.... +.++.++ .+|++|.+++.+++ .+
T Consensus 9 ~~~-~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~--~~ 83 (342)
T 1y1p_A 9 PEG-SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY--PGRFETAVVEDMLKQGAYDEVI--KG 83 (342)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS--TTTEEEEECSCTTSTTTTTTTT--TT
T ss_pred CCC-CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccC--CCceEEEEecCCcChHHHHHHH--cC
Confidence 345 899999999999999999999999999999875433222222222211 1468888 89999999998888 58
Q ss_pred CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHH-cCCCEEEEeccceecCCCC----CCCCCCCC--------
Q 015080 146 FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMAR-HGVDTLIYSSTCATYGEPE----KMPITEET-------- 212 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~-~~~~~iV~~SS~~~~~~~~----~~~~~e~~-------- 212 (413)
+|+||||||..... .++...+++|+.++.++++++.+ .++++||++||.++|+... +.+++|+.
T Consensus 84 ~d~vih~A~~~~~~---~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 160 (342)
T 1y1p_A 84 AAGVAHIASVVSFS---NKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDK 160 (342)
T ss_dssp CSEEEECCCCCSCC---SCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHH
T ss_pred CCEEEEeCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhh
Confidence 99999999976432 46788999999999999999985 5688999999999986432 14567765
Q ss_pred --------CCCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHh
Q 015080 213 --------PQAPINPYGKAKKMAEDIILDFSKNS--DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAAR 282 (413)
Q Consensus 213 --------~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (413)
+..|.++|+.||+++|.+++.++.++ +++++++||+.+|||...... .+..++.++..+.
T Consensus 161 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~----------~~~~~~~~~~~~~ 230 (342)
T 1y1p_A 161 AKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPET----------QSGSTSGWMMSLF 230 (342)
T ss_dssp HHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTT----------CCCHHHHHHHHHH
T ss_pred hccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCC----------CCccHHHHHHHHH
Confidence 23456789999999999999998774 799999999999999753210 0125666666666
Q ss_pred ccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecC
Q 015080 283 GIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEP 362 (413)
Q Consensus 283 ~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~ 362 (413)
.+.+ +.+.+ ++ +.++|+|++|+|++++.++...... ++.| +++++.+|+.|+++.+.+.+|.+ ++.. +
T Consensus 231 ~~~~-~~~~~------~~-~~~~~v~v~Dva~a~~~~~~~~~~~-g~~~-~~~g~~~s~~e~~~~i~~~~~~~-~~~~-~ 298 (342)
T 1y1p_A 231 NGEV-SPALA------LM-PPQYYVSAVDIGLLHLGCLVLPQIE-RRRV-YGTAGTFDWNTVLATFRKLYPSK-TFPA-D 298 (342)
T ss_dssp TTCC-CHHHH------TC-CSEEEEEHHHHHHHHHHHHHCTTCC-SCEE-EECCEEECHHHHHHHHHHHCTTS-CCCC-C
T ss_pred cCCC-ccccc------cC-CcCCEeEHHHHHHHHHHHHcCcccC-CceE-EEeCCCCCHHHHHHHHHHHCCCc-cCCC-C
Confidence 6654 33333 33 5689999999999999999864332 2344 44677899999999999999975 2211 1
Q ss_pred CCCCCccccccCHHHHHHhcCc---ccccccHHHHHHHHHHHHH
Q 015080 363 RRPGDYAEVYSDPTKIRLELNW---TAKYTNLQESLEIAWRWQK 403 (413)
Q Consensus 363 ~~~~~~~~~~~d~~k~~~~lG~---~p~~~~~~e~l~~~~~~~~ 403 (413)
..........+|++|+++.||| .+.+ +++++|+++++||+
T Consensus 299 ~~~~~~~~~~~d~~k~~~~lg~~~~~~~~-~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 299 FPDQGQDLSKFDTAPSLEILKSLGRPGWR-SIEESIKDLVGSET 341 (342)
T ss_dssp CCCCCCCCCEECCHHHHHHHHHTTCCSCC-CHHHHHHHHHCCSC
T ss_pred CCccccccccCChHHHHHHHhhcccCCcC-CHHHHHHHHHHHhh
Confidence 1111122366799999999987 3444 89999999999875
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=303.41 Aligned_cols=268 Identities=17% Similarity=0.194 Sum_probs=214.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||| ||||++++++|+++|++|++++|...+. ..+.. .+++++.+|++|.+ + .++|+||
T Consensus 6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~----~~~~~-----~~~~~~~~D~~d~~-----~--~~~d~vi 68 (286)
T 3ius_A 6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQM----EAIRA-----SGAEPLLWPGEEPS-----L--DGVTHLL 68 (286)
T ss_dssp CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGH----HHHHH-----TTEEEEESSSSCCC-----C--TTCCEEE
T ss_pred CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhh----hhHhh-----CCCeEEEecccccc-----c--CCCCEEE
Confidence 79999998 9999999999999999999998754322 11111 47899999999944 4 6899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHH--cCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMAR--HGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~--~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
|+|+..... .+ .+.++++++++ .++++|||+||.++|+.....+++|+.+..|.++|+.+|.++|
T Consensus 69 ~~a~~~~~~----~~---------~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E 135 (286)
T 3ius_A 69 ISTAPDSGG----DP---------VLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDETTPLTPTAARGRWRVMAE 135 (286)
T ss_dssp ECCCCBTTB----CH---------HHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTTSCCCCCSHHHHHHHHHH
T ss_pred ECCCccccc----cH---------HHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCCCCCCCCCHHHHHHHHHH
Confidence 999965331 11 25688999988 6789999999999999888778999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeeccc
Q 015080 229 DIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308 (413)
Q Consensus 229 ~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~ 308 (413)
.+++.+ .|++++++||+.+|||+... +..+..+.+ +.+.+ +++.++|+|
T Consensus 136 ~~~~~~---~~~~~~ilRp~~v~G~~~~~--------------------~~~~~~~~~-~~~~~-------~~~~~~~i~ 184 (286)
T 3ius_A 136 QQWQAV---PNLPLHVFRLAGIYGPGRGP--------------------FSKLGKGGI-RRIIK-------PGQVFSRIH 184 (286)
T ss_dssp HHHHHS---TTCCEEEEEECEEEBTTBSS--------------------STTSSSSCC-CEEEC-------TTCCBCEEE
T ss_pred HHHHhh---cCCCEEEEeccceECCCchH--------------------HHHHhcCCc-cccCC-------CCcccceEE
Confidence 999986 58999999999999997421 112233333 44443 457899999
Q ss_pred HHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEec--CCCCCC------ccccccCHHHHHH
Q 015080 309 VNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYE--PRRPGD------YAEVYSDPTKIRL 380 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~--~~~~~~------~~~~~~d~~k~~~ 380 (413)
++|+|++++.+++++..+ ++||+++++++|+.|+++.+.+.+|.+.+.... +..... .....+|++|+++
T Consensus 185 v~Dva~a~~~~~~~~~~g--~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 262 (286)
T 3ius_A 185 VEDIAQVLAASMARPDPG--AVYNVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRIKE 262 (286)
T ss_dssp HHHHHHHHHHHHHSCCTT--CEEEECCSCCBCHHHHHHHHHHHHTCCCCCEEEGGGSCCCHHHHHTTSCCCEECCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC--CEEEEeCCCCccHHHHHHHHHHHcCCCCCcccchhhhccChhHHHhhcCCceeehHHHHH
Confidence 999999999999987643 799999999999999999999999987664322 111111 1456789999999
Q ss_pred hcCcccccccHHHHHHHHHHH
Q 015080 381 ELNWTAKYTNLQESLEIAWRW 401 (413)
Q Consensus 381 ~lG~~p~~~~~~e~l~~~~~~ 401 (413)
+|||+|++|+++++|+++++.
T Consensus 263 ~lG~~p~~p~~~e~l~~~~~~ 283 (286)
T 3ius_A 263 ELGVRLKYPNYRVGLEALQAD 283 (286)
T ss_dssp TTCCCCSCSSHHHHHHHHHHT
T ss_pred HhCCCCCcCCHHHHHHHHHHh
Confidence 999999986699999998863
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=307.03 Aligned_cols=303 Identities=18% Similarity=0.224 Sum_probs=216.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+||||++++++|+++|++|++++|+......... +..+.....+++++.+|++|.+++.+++ .++|+||
T Consensus 6 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~Vi 82 (337)
T 2c29_D 6 ETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKH-LLDLPKAETHLTLWKADLADEGSFDEAI--KGCTGVF 82 (337)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHH-HHTSTTHHHHEEEEECCTTSTTTTHHHH--TTCSEEE
T ss_pred CEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHH-HHhcccCCCeEEEEEcCCCCHHHHHHHH--cCCCEEE
Confidence 899999999999999999999999999998875433212111 1111100135889999999999999999 6799999
Q ss_pred EcCcccCccCCcCChH-HHHHHHHHHHHHHHHHHHHcC-CCEEEEeccce-ecCCCC-CCCCCCCCCC---------CCC
Q 015080 151 HFAAVAYVGESTLDPL-KYYHNITSNTLVVLESMARHG-VDTLIYSSTCA-TYGEPE-KMPITEETPQ---------API 217 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~-~~~~~n~~~~~~ll~~~~~~~-~~~iV~~SS~~-~~~~~~-~~~~~e~~~~---------~~~ 217 (413)
|+|+... ....++. ..+++|+.++.++++++++.+ +++|||+||.+ +|+... ..+++|+.+. .+.
T Consensus 83 h~A~~~~--~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~ 160 (337)
T 2c29_D 83 HVATPMD--FESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTA 160 (337)
T ss_dssp ECCCCCC--SSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTT
T ss_pred EeccccC--CCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCCcc
Confidence 9998652 1223343 578999999999999999887 89999999987 444322 2235565432 144
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccC
Q 015080 218 NPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST 297 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 297 (413)
++|+.||.++|.++..+.+++|++++++||+.||||....... ..+......+.+ .+ .. .+
T Consensus 161 ~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~-----------~~~~~~~~~~~g-~~-~~-~~----- 221 (337)
T 2c29_D 161 WMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMP-----------PSLITALSPITG-NE-AH-YS----- 221 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCC-----------HHHHHHTHHHHT-CG-GG-HH-----
T ss_pred chHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCC-----------chHHHHHHHHcC-CC-cc-cc-----
Confidence 5799999999999999887789999999999999997432100 111111111121 11 10 11
Q ss_pred CCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCC-CceeEecCCCCCCccccccCHH
Q 015080 298 ADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSA-NIKVIYEPRRPGDYAEVYSDPT 376 (413)
Q Consensus 298 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~d~~ 376 (413)
.. ...+|+|++|+|++++.+++.+... +.|+++ +..+|+.|+++.+.+.++. +.+....+. ........+|++
T Consensus 222 -~~-~~~~~i~v~Dva~a~~~~~~~~~~~--~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~d~~ 295 (337)
T 2c29_D 222 -II-RQGQFVHLDDLCNAHIYLFENPKAE--GRYICS-SHDCIILDLAKMLREKYPEYNIPTEFKGV-DENLKSVCFSSK 295 (337)
T ss_dssp -HH-TEEEEEEHHHHHHHHHHHHHCTTCC--EEEEEC-CEEEEHHHHHHHHHHHCTTSCCCSCCTTC-CTTCCCCEECCH
T ss_pred -cc-CCCCEEEHHHHHHHHHHHhcCcccC--ceEEEe-CCCCCHHHHHHHHHHHCCCccCCCCCCcc-cCCCccccccHH
Confidence 11 2245999999999999999864432 578775 4568999999999998842 333222111 122345678999
Q ss_pred HHHHhcCcccccccHHHHHHHHHHHHHhc
Q 015080 377 KIRLELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 377 k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
|+ ++|||+|++ +++|+|+++++|++++
T Consensus 296 k~-~~lG~~p~~-~l~e~l~~~~~~~~~~ 322 (337)
T 2c29_D 296 KL-TDLGFEFKY-SLEDMFTGAVDTCRAK 322 (337)
T ss_dssp HH-HHHTCCCCC-CHHHHHHHHHHHHHHT
T ss_pred HH-HHcCCCcCC-CHHHHHHHHHHHHHHc
Confidence 99 789999999 8999999999999875
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=301.43 Aligned_cols=303 Identities=20% Similarity=0.255 Sum_probs=211.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEec-CCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDN-LSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
|+|||||||||||++++++|+++|++|++++| +........ .+..+.....++.++.+|++|.+++.+++ .++|+|
T Consensus 2 k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~v 78 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVS-FLTNLPGASEKLHFFNADLSNPDSFAAAI--EGCVGI 78 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCH-HHHTSTTHHHHEEECCCCTTCGGGGHHHH--TTCSEE
T ss_pred CEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHH-HHHhhhccCCceEEEecCCCCHHHHHHHH--cCCCEE
Confidence 78999999999999999999999999999887 432211111 11111100135788999999999999999 679999
Q ss_pred EEcCcccCccCCcCCh-HHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccceec-CCCC-CCCCCCCCCC--------CCC
Q 015080 150 MHFAAVAYVGESTLDP-LKYYHNITSNTLVVLESMARH-GVDTLIYSSTCATY-GEPE-KMPITEETPQ--------API 217 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~-~~~~~~n~~~~~~ll~~~~~~-~~~~iV~~SS~~~~-~~~~-~~~~~e~~~~--------~~~ 217 (413)
||||+... ....++ ...+++|+.++.++++++.+. ++++||++||.+++ +... ..+++|+.+. .|.
T Consensus 79 ih~A~~~~--~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~ 156 (322)
T 2p4h_X 79 FHTASPID--FAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPF 156 (322)
T ss_dssp EECCCCC----------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCCT
T ss_pred EEcCCccc--CCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCcc
Confidence 99997531 122222 348899999999999999988 78999999998754 3221 2345565432 223
Q ss_pred C-hhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccccc
Q 015080 218 N-PYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYS 296 (413)
Q Consensus 218 ~-~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 296 (413)
. +|+.||.++|.++..+.+++|++++++||+.||||...... ......+.....+ .+ ..+
T Consensus 157 ~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~-----------~~~~~~~~~~~~g-~~-~~~------ 217 (322)
T 2p4h_X 157 GWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKL-----------PDSIEKALVLVLG-KK-EQI------ 217 (322)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSC-----------CHHHHHHTHHHHS-CG-GGC------
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCC-----------CchHHHHHHHHhC-CC-ccC------
Confidence 3 69999999999999988778999999999999999743210 0122222222222 11 111
Q ss_pred CCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCC-CceeEecCCCCCCccccccCH
Q 015080 297 TADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSA-NIKVIYEPRRPGDYAEVYSDP 375 (413)
Q Consensus 297 ~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~d~ 375 (413)
+. ..++|+|++|+|++++.+++.+.. . +.|| ++++.+|+.|+++.+.+.++. +.+...............+|+
T Consensus 218 -~~--~~~~~i~v~Dva~a~~~~~~~~~~-~-g~~~-~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 291 (322)
T 2p4h_X 218 -GV--TRFHMVHVDDVARAHIYLLENSVP-G-GRYN-CSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNT 291 (322)
T ss_dssp -CE--EEEEEEEHHHHHHHHHHHHHSCCC-C-EEEE-CCCEEEEHHHHHHHHHHHCTTSCCCCTTTTTTCCCEECCEECC
T ss_pred -cC--CCcCEEEHHHHHHHHHHHhhCcCC-C-CCEE-EcCCCCCHHHHHHHHHHhCCCCCCCCCccccCCCCCcceeccc
Confidence 12 334899999999999999976443 2 3598 567889999999999988752 222110000011113567899
Q ss_pred HHHHHhcCcccccccHHHHHHHHHHHHHhc
Q 015080 376 TKIRLELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 376 ~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
+|+ ++|||+|++ +++++|+++++|++++
T Consensus 292 ~k~-~~lG~~p~~-~~~~~l~~~~~~~~~~ 319 (322)
T 2p4h_X 292 KKL-VDAGFDFKY-TIEDMFDDAIQCCKEK 319 (322)
T ss_dssp HHH-HHTTCCCCC-CHHHHHHHHHHHHHHH
T ss_pred HHH-HHhCCccCC-CHHHHHHHHHHHHHhc
Confidence 999 579999999 8999999999999875
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-38 Score=302.79 Aligned_cols=295 Identities=18% Similarity=0.187 Sum_probs=230.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC-----CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS-----YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G-----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
|+|||||||||||++++++|+++| ++|++++|...... . ...+++++.+|++|.+++.++++..+
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-----~-----~~~~~~~~~~Dl~d~~~~~~~~~~~~ 71 (364)
T 2v6g_A 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-----H-----EDNPINYVQCDISDPDDSQAKLSPLT 71 (364)
T ss_dssp EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-----C-----CSSCCEEEECCTTSHHHHHHHHTTCT
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-----c-----ccCceEEEEeecCCHHHHHHHHhcCC
Confidence 789999999999999999999999 99999998655432 0 12578999999999999999995433
Q ss_pred -CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEE-------EeccceecCCC--CCCCCCCCCC
Q 015080 146 -FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH--GVDTLI-------YSSTCATYGEP--EKMPITEETP 213 (413)
Q Consensus 146 -~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV-------~~SS~~~~~~~--~~~~~~e~~~ 213 (413)
+|+|||+||... .++...+++|+.++.++++++++. +++++| |+||.++||.. ...+++|+.+
T Consensus 72 ~~d~vih~a~~~~-----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~ 146 (364)
T 2v6g_A 72 DVTHVFYVTWANR-----STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLP 146 (364)
T ss_dssp TCCEEEECCCCCC-----SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSC
T ss_pred CCCEEEECCCCCc-----chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCcccc
Confidence 999999999752 357889999999999999999987 788998 89999999875 3457788877
Q ss_pred CCC-CChhHHHHHHHHHHHHHHHhhCC-CcEEEEeecceecCCCCCCCCCCCCcccccccchHHH-HHHHH--hccccce
Q 015080 214 QAP-INPYGKAKKMAEDIILDFSKNSD-MAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGA-CFDAA--RGIIAGL 288 (413)
Q Consensus 214 ~~~-~~~Y~~sK~~~e~~~~~~~~~~g-i~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~i 288 (413)
..| .+.| +++|.+++++++++| ++++++||+.||||+..... +.+.+. ++..+ ..+.+ +
T Consensus 147 ~~~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~-----------~~~~~~~~~~~~~~~~g~~-~ 210 (364)
T 2v6g_A 147 RLKYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMM-----------NLVGTLCVYAAICKHEGKV-L 210 (364)
T ss_dssp CCSSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSS-----------CHHHHHHHHHHHHHHHTCC-B
T ss_pred CCccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCccc-----------chHHHHHHHHHHHHhcCCc-e
Confidence 655 6678 458888888887777 99999999999999753110 133343 34444 23444 4
Q ss_pred eEecccccCCCC---ceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeE--ecCC
Q 015080 289 KVKGTDYSTADG---TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVI--YEPR 363 (413)
Q Consensus 289 ~~~g~~~~~~~~---~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~--~~~~ 363 (413)
.+.| ++ ....+++|++|+|++++.+++++.. .+++||+++++++|+.|+++.+.+.+|.+.+.. ..|.
T Consensus 211 ~~~g------~~~~~~~~~~~~~v~Dva~a~~~~~~~~~~-~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~ 283 (364)
T 2v6g_A 211 RFTG------CKAAWDGYSDCSDADLIAEHHIWAAVDPYA-KNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDL 283 (364)
T ss_dssp CCCS------CHHHHHSCBCCEEHHHHHHHHHHHHHCGGG-TTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCC
T ss_pred ecCC------CcccccccCCCCcHHHHHHHHHHHHhCCCC-CCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCc
Confidence 5454 55 3457888999999999999986543 237999999999999999999999999876543 2232
Q ss_pred C----------------------CC---Cc-----------cc-cccCHHHHHHhcCcccccccHHHHHHHHHHHHHhc
Q 015080 364 R----------------------PG---DY-----------AE-VYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 364 ~----------------------~~---~~-----------~~-~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
+ .. .. .. ..+|++|+++ |||+|.+ +++++|+++++||+++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~-~~~e~l~~~~~~~~~~ 360 (364)
T 2v6g_A 284 KLQDLMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFR-NSKNAFISWIDKAKAY 360 (364)
T ss_dssp CHHHHTTTCHHHHHHHHHHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCC-CHHHHHHHHHHHHHHT
T ss_pred cHHHHHhhhHHHHHHHHHHhCCCccccccccccchhhhccccchhhcchHHHHh-cCCCCCC-CHHHHHHHHHHHHHHc
Confidence 1 11 00 23 4789999987 9999988 8999999999999875
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=308.56 Aligned_cols=308 Identities=19% Similarity=0.233 Sum_probs=213.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||+||||++|+++|+++|++|+++.|+..+..... .+..+. ...++.++.+|++|.+++.+++ .++|+||
T Consensus 10 ~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~-~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~--~~~D~Vi 85 (338)
T 2rh8_A 10 KTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVS-HLLELQ-ELGDLKIFRADLTDELSFEAPI--AGCDFVF 85 (338)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTH-HHHHHG-GGSCEEEEECCTTTSSSSHHHH--TTCSEEE
T ss_pred CEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHH-HHHhcC-CCCcEEEEecCCCChHHHHHHH--cCCCEEE
Confidence 88999999999999999999999999999887654332221 111111 1246889999999999999998 6799999
Q ss_pred EcCcccCccCCcCCh-HHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccce-ecCCC---CCCCCCCCCCC--------CC
Q 015080 151 HFAAVAYVGESTLDP-LKYYHNITSNTLVVLESMARHG-VDTLIYSSTCA-TYGEP---EKMPITEETPQ--------AP 216 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~-~~~~~~n~~~~~~ll~~~~~~~-~~~iV~~SS~~-~~~~~---~~~~~~e~~~~--------~~ 216 (413)
|+||.... ...++ ...+++|+.|+.++++++++.+ +++|||+||.+ +|+.. ...+++|+.+. .|
T Consensus 86 h~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (338)
T 2rh8_A 86 HVATPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKP 163 (338)
T ss_dssp EESSCCCC-----------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------C
T ss_pred EeCCccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccCC
Confidence 99996522 22233 3488999999999999999985 89999999977 44321 11256666522 11
Q ss_pred -CChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccc
Q 015080 217 -INPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDY 295 (413)
Q Consensus 217 -~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 295 (413)
..+|+.||.++|.++..+.+++|+++++|||+.||||...... ...+..+...+.+ .+ .. .+...
T Consensus 164 ~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~-----------~~~~~~~~~~~~g-~~-~~-~~~~~ 229 (338)
T 2rh8_A 164 PTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDV-----------PSSIGLAMSLITG-NE-FL-INGMK 229 (338)
T ss_dssp CCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSC-----------CHHHHHHHHHHHT-CH-HH-HHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCC-----------CchHHHHHHHHcC-Cc-cc-ccccc
Confidence 2269999999999999988778999999999999999753210 0222222222222 11 00 00000
Q ss_pred cCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcC-CCceeEecCCCCCCccccccC
Q 015080 296 STADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATS-ANIKVIYEPRRPGDYAEVYSD 374 (413)
Q Consensus 296 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~~~~~~~~~~d 374 (413)
....+...++|+|++|+|++++.+++.+... +.|++++ ..+|+.|+++.+.+.++ .+.+....+. .. .....+|
T Consensus 230 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~--~~~~~~~-~~~s~~e~~~~l~~~~~~~~~~~~~~~~-~~-~~~~~~d 304 (338)
T 2rh8_A 230 GMQMLSGSVSIAHVEDVCRAHIFVAEKESAS--GRYICCA-ANTSVPELAKFLSKRYPQYKVPTDFGDF-PP-KSKLIIS 304 (338)
T ss_dssp HHHHHHSSEEEEEHHHHHHHHHHHHHCTTCC--EEEEECS-EEECHHHHHHHHHHHCTTSCCCCCCTTS-CS-SCSCCCC
T ss_pred ccccccCcccEEEHHHHHHHHHHHHcCCCcC--CcEEEec-CCCCHHHHHHHHHHhCCCCCCCCCCCCC-Cc-Ccceeec
Confidence 0000012348999999999999999864433 5798865 56899999999999886 2333222111 11 1236789
Q ss_pred HHHHHHhcCcccccccHHHHHHHHHHHHHhc
Q 015080 375 PTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 375 ~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
++|+ ++|||+|++ +++|+|+++++|++++
T Consensus 305 ~~k~-~~lG~~p~~-~l~~gl~~~~~~~~~~ 333 (338)
T 2rh8_A 305 SEKL-VKEGFSFKY-GIEEIYDESVEYFKAK 333 (338)
T ss_dssp CHHH-HHHTCCCSC-CHHHHHHHHHHHHHHT
T ss_pred hHHH-HHhCCCCCC-CHHHHHHHHHHHHHHc
Confidence 9999 579999999 9999999999999876
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=288.69 Aligned_cols=267 Identities=19% Similarity=0.159 Sum_probs=216.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++++++|++ |++|++++|..... .+ +.+|++|++++.++++..++|+||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~~--------------~~---~~~Dl~~~~~~~~~~~~~~~d~vi 62 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEIQ--------------GG---YKLDLTDFPRLEDFIIKKRPDVII 62 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCCT--------------TC---EECCTTSHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcCC--------------CC---ceeccCCHHHHHHHHHhcCCCEEE
Confidence 4699999999999999999994 89999999865310 11 789999999999998655699999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
||||........++++..+++|+.++.++++++++.+. +||++||.++|+.... +++|+.+..|.+.|+.+|+++|.+
T Consensus 63 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~iv~~SS~~~~~~~~~-~~~e~~~~~~~~~Y~~sK~~~e~~ 140 (273)
T 2ggs_A 63 NAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS-YIVHISTDYVFDGEKG-NYKEEDIPNPINYYGLSKLLGETF 140 (273)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-EEEEEEEGGGSCSSSC-SBCTTSCCCCSSHHHHHHHHHHHH
T ss_pred ECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEecceeEcCCCC-CcCCCCCCCCCCHHHHHHHHHHHH
Confidence 99997654333457788999999999999999998876 9999999999976544 788988888899999999999998
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHH
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~ 310 (413)
++. ++++++||+.|||+. .+...+...+..+.+ +.+.+ + .++++|++
T Consensus 141 ~~~------~~~~~iR~~~v~G~~-----------------~~~~~~~~~~~~~~~-~~~~~------~---~~~~~~~~ 187 (273)
T 2ggs_A 141 ALQ------DDSLIIRTSGIFRNK-----------------GFPIYVYKTLKEGKT-VFAFK------G---YYSPISAR 187 (273)
T ss_dssp HCC------TTCEEEEECCCBSSS-----------------SHHHHHHHHHHTTCC-EEEES------C---EECCCBHH
T ss_pred HhC------CCeEEEecccccccc-----------------HHHHHHHHHHHcCCC-EEeec------C---CCCceEHH
Confidence 866 578999999999832 455556566555554 55543 2 78999999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecC----CCCCCccccccCHHHHHHhcCccc
Q 015080 311 DLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEP----RRPGDYAEVYSDPTKIRLELNWTA 386 (413)
Q Consensus 311 Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~----~~~~~~~~~~~d~~k~~~~lG~~p 386 (413)
|+|++++.++..+. . ++||+++ +.+|+.|+++.+.+.+|.+.++...+ ..........+|++|++++|||+|
T Consensus 188 dva~~i~~~~~~~~--~-g~~~i~~-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 263 (273)
T 2ggs_A 188 KLASAILELLELRK--T-GIIHVAG-ERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDF 263 (273)
T ss_dssp HHHHHHHHHHHHTC--C-EEEECCC-CCEEHHHHHHHHHHHTTCCSCEEEESSCTTCCSCCCSBCCBCCHHHHHHCSSCC
T ss_pred HHHHHHHHHHhcCc--C-CeEEECC-CcccHHHHHHHHHHHhCCChhhcccccccccccCCCcccccCHHHHHHHhCCCC
Confidence 99999999998764 2 5999998 99999999999999999887654321 112234467899999999999999
Q ss_pred -ccccHHHHH
Q 015080 387 -KYTNLQESL 395 (413)
Q Consensus 387 -~~~~~~e~l 395 (413)
.+ +++++|
T Consensus 264 ~~~-~l~~~~ 272 (273)
T 2ggs_A 264 YTL-DLDGMV 272 (273)
T ss_dssp CSC-CGGGCC
T ss_pred CCc-cccccc
Confidence 45 888765
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=288.40 Aligned_cols=276 Identities=17% Similarity=0.173 Sum_probs=211.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++|+++|+++||+|++++|++.. ..+ ..| +...+.+ .++|.||
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~---------------~~~---~~~----~~~~~~l--~~~d~vi 56 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP---------------GRI---TWD----ELAASGL--PSCDAAV 56 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT---------------TEE---EHH----HHHHHCC--CSCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc---------------Cee---ecc----hhhHhhc--cCCCEEE
Confidence 569999999999999999999999999999875432 111 122 2222334 6899999
Q ss_pred EcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHcC--CCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHH
Q 015080 151 HFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARHG--VDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAK 224 (413)
Q Consensus 151 ~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK 224 (413)
|+||...... ........++.|+.+|.++++++...+ ..++|++||+++||.....+.+|++|..+.+.|+.+|
T Consensus 57 hla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~~p~~~~~~~~~~~ 136 (298)
T 4b4o_A 57 NLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDSPGGDFDFFSNLV 136 (298)
T ss_dssp ECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTTCCCSCSSHHHHHH
T ss_pred EeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccccCCccccchhHHHH
Confidence 9998532221 122345578899999999999998875 4468999999999999888999999999989999888
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceee
Q 015080 225 KMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304 (413)
Q Consensus 225 ~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 304 (413)
...|... .....+++++++||+.||||+. .....+......+.. ...| ++++.+
T Consensus 137 ~~~e~~~--~~~~~~~~~~~~r~~~v~g~~~----------------~~~~~~~~~~~~~~~--~~~g------~g~~~~ 190 (298)
T 4b4o_A 137 TKWEAAA--RLPGDSTRQVVVRSGVVLGRGG----------------GAMGHMLLPFRLGLG--GPIG------SGHQFF 190 (298)
T ss_dssp HHHHHHH--CCSSSSSEEEEEEECEEECTTS----------------HHHHHHHHHHHTTCC--CCBT------TSCSBC
T ss_pred HHHHHHH--HhhccCCceeeeeeeeEEcCCC----------------CchhHHHHHHhcCCc--ceec------ccCcee
Confidence 8887653 3344789999999999999862 445555555555443 2234 889999
Q ss_pred ecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCC-----------cccccc
Q 015080 305 DYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD-----------YAEVYS 373 (413)
Q Consensus 305 ~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~-----------~~~~~~ 373 (413)
+|||++|+|++++.+++++... ++||+++++++|+.|+++.+++.+|++..+ .+|.+..+ ......
T Consensus 191 ~~ihv~Dva~a~~~~~~~~~~~--g~yn~~~~~~~t~~e~~~~ia~~lgrp~~~-pvP~~~~~~~~g~~~~~~~l~~~rv 267 (298)
T 4b4o_A 191 PWIHIGDLAGILTHALEANHVH--GVLNGVAPSSATNAEFAQTFGAALGRRAFI-PLPSAVVQAVFGRQRAIMLLEGQKV 267 (298)
T ss_dssp CEEEHHHHHHHHHHHHHCTTCC--EEEEESCSCCCBHHHHHHHHHHHHTCCCCC-CBCHHHHHHHHCHHHHHHHHCCCCB
T ss_pred ecCcHHHHHHHHHHHHhCCCCC--CeEEEECCCccCHHHHHHHHHHHhCcCCcc-cCCHHHHHHHhcchhHHHhhCCCEE
Confidence 9999999999999999977654 699999999999999999999999987543 23321100 012345
Q ss_pred CHHHHHHhcCcccccccHHHHHHHHHH
Q 015080 374 DPTKIRLELNWTAKYTNLQESLEIAWR 400 (413)
Q Consensus 374 d~~k~~~~lG~~p~~~~~~e~l~~~~~ 400 (413)
+++|++ ++||++++|+++++|++.++
T Consensus 268 ~~~kl~-~~Gf~f~yp~l~~al~~l~~ 293 (298)
T 4b4o_A 268 IPRRTL-ATGYQYSFPELGAALKEIAE 293 (298)
T ss_dssp CCHHHH-HTTCCCSCCSHHHHHHHHHH
T ss_pred cHHHHH-HCCCCCCCCCHHHHHHHHHH
Confidence 678887 79999999899999999886
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-36 Score=301.69 Aligned_cols=282 Identities=17% Similarity=0.155 Sum_probs=209.3
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
||+|||||||||||++|+++|++.|++|++++|...+.+ .+.+|+.+. +.+++ .++|+|
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~-----------------~v~~d~~~~--~~~~l--~~~D~V 205 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPG-----------------KRFWDPLNP--ASDLL--DGADVL 205 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTT-----------------CEECCTTSC--CTTTT--TTCSEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcc-----------------ceeecccch--hHHhc--CCCCEE
Confidence 489999999999999999999999999999998654321 256777653 34445 689999
Q ss_pred EEcCcccCccC-CcCChHHHHHHHHHHHHHHHHH-HHHcCCCEEEEeccceecC-CCCCCCCCCCCCCCCCChhHHHHHH
Q 015080 150 MHFAAVAYVGE-STLDPLKYYHNITSNTLVVLES-MARHGVDTLIYSSTCATYG-EPEKMPITEETPQAPINPYGKAKKM 226 (413)
Q Consensus 150 i~~Ag~~~~~~-~~~~~~~~~~~n~~~~~~ll~~-~~~~~~~~iV~~SS~~~~~-~~~~~~~~e~~~~~~~~~Y~~sK~~ 226 (413)
|||||...... ....+...+++|+.++.+++++ +++.++++|||+||.++|| .....+++|+.+. +.+.|+.+|..
T Consensus 206 ih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~~~~-~~~~y~~~~~~ 284 (516)
T 3oh8_A 206 VHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEESES-GDDFLAEVCRD 284 (516)
T ss_dssp EECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTTSCC-CSSHHHHHHHH
T ss_pred EECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCCCCC-CcChHHHHHHH
Confidence 99999764432 3345677899999999999999 5556788999999999998 4455567888776 78899999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeec
Q 015080 227 AEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306 (413)
Q Consensus 227 ~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 306 (413)
.|.++..+ .+.|++++++||+.||||+. .+++.+...+..+.. .+.+ ++++.++|
T Consensus 285 ~E~~~~~~-~~~gi~~~ilRp~~v~Gp~~----------------~~~~~~~~~~~~g~~--~~~g------~g~~~~~~ 339 (516)
T 3oh8_A 285 WEHATAPA-SDAGKRVAFIRTGVALSGRG----------------GMLPLLKTLFSTGLG--GKFG------DGTSWFSW 339 (516)
T ss_dssp HHHTTHHH-HHTTCEEEEEEECEEEBTTB----------------SHHHHHHHTTC---C--CCCT------TSCCEECE
T ss_pred HHHHHHHH-HhCCCCEEEEEeeEEECCCC----------------ChHHHHHHHHHhCCC--cccC------CCCceEce
Confidence 99876544 44799999999999999862 455555555544433 1233 78899999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCC-----CCc-------cccccC
Q 015080 307 IDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRP-----GDY-------AEVYSD 374 (413)
Q Consensus 307 i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~-----~~~-------~~~~~d 374 (413)
||++|+|++++.+++++... ++||+++++++|+.|+++.+.+.+|.+..+ ..|.+. +.. ....++
T Consensus 340 i~v~Dva~ai~~~l~~~~~~--g~~ni~~~~~~s~~el~~~i~~~~g~~~~~-~~p~~~~~~~~g~~~~~~~~~~~~~~~ 416 (516)
T 3oh8_A 340 IAIDDLTDIYYRAIVDAQIS--GPINAVAPNPVSNADMTKILATSMHRPAFI-QIPSLGPKILLGSQGAEELALASQRTA 416 (516)
T ss_dssp EEHHHHHHHHHHHHHCTTCC--EEEEESCSCCEEHHHHHHHTTC----------------------CCGGGGGGCEEEEC
T ss_pred EeHHHHHHHHHHHHhCcccC--CcEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCHHHHHHHhCCchhHHHhhcCCeec
Confidence 99999999999999976543 699999999999999999999999977632 223211 111 234568
Q ss_pred HHHHHHhcCcccccccHHHHHHHHHHHH
Q 015080 375 PTKIRLELNWTAKYTNLQESLEIAWRWQ 402 (413)
Q Consensus 375 ~~k~~~~lG~~p~~~~~~e~l~~~~~~~ 402 (413)
++|++ +|||+|++++++++|++++++.
T Consensus 417 ~~kl~-~lG~~~~~~~l~e~l~~~l~~~ 443 (516)
T 3oh8_A 417 PAALE-NLSHTFRYTDIGAAIAHELGYE 443 (516)
T ss_dssp CHHHH-HTTCCCSCSSHHHHHHHHHTCC
T ss_pred hHHHH-HCCCCCCCCCHHHHHHHHhCcc
Confidence 88988 7999999966999999998753
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=296.35 Aligned_cols=309 Identities=17% Similarity=0.132 Sum_probs=222.4
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchh---hhhhhhhcC------CCCceEEEEccCCCHHHHHHH
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGA---VKVLQELFP------EPGRLQFIYADLGDAKAVNKF 140 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~---~~~~~~~~~------~~~~~~~~~~Dl~d~~~~~~~ 140 (413)
||+|||||||||||++++++|++.|++|++++|........ .+.+..... ...++.++.+|++|++++. .
T Consensus 69 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-~ 147 (427)
T 4f6c_A 69 LGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-L 147 (427)
T ss_dssp CEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC-C
T ss_pred CCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC-C
Confidence 48999999999999999999999999999999866522222 222211110 1257999999999988887 3
Q ss_pred hhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCC-----CCCCCCCCCCC--
Q 015080 141 FSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGE-----PEKMPITEETP-- 213 (413)
Q Consensus 141 ~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~-----~~~~~~~e~~~-- 213 (413)
+ .++|+||||||.... ..++...+++|+.++.++++++.+ ++++||++||.++ |. ....+++|+++
T Consensus 148 ~--~~~d~Vih~A~~~~~---~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~~ 220 (427)
T 4f6c_A 148 P--ENMDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEADVYK 220 (427)
T ss_dssp S--SCCSEEEECCCCC----------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEEGGG-GSEECSSCSCCEECTTCSCS
T ss_pred c--CCCCEEEECCcccCC---CCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECchHh-CCCccCCCCCcccccccccc
Confidence 3 789999999997642 345677899999999999999999 7789999999988 43 23456777776
Q ss_pred -CCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 214 -QAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 214 -~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
..+.+.|+.||+++|.+++.+++ .|++++++|||.||||...+.+.... ...++..++..+....+ ++. +
T Consensus 221 ~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~-~ 291 (427)
T 4f6c_A 221 GQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNI------KTNRFSMVMNDLLQLDC-IGV-S 291 (427)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTG------GGCHHHHHHHHHHHSSE-EEH-H
T ss_pred CCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCc------chHHHHHHHHHHHhcCC-CCC-c
Confidence 55789999999999999999865 79999999999999997543211100 01234455555544433 332 2
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCC------
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPG------ 366 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~------ 366 (413)
.++..++|++++|+|++++.++..+. .+++||+++++++++.|+++.+.+ +| .+....+.+..
T Consensus 292 ------~~~~~~~~v~v~DvA~ai~~~~~~~~--~g~~~~l~~~~~~s~~el~~~i~~-~g--~~~~~~~~~~~~l~~~~ 360 (427)
T 4f6c_A 292 ------MAEMPVDFSFVDTTARQIVALAQVNT--PQIIYHVLSPNKMPVKSLLECVKR-KE--IELVSDESFNEILQKQD 360 (427)
T ss_dssp ------HHTCEECCEEHHHHHHHHHHHTTSCC--CCSEEEESCSCCEEHHHHHHHHHS-SC--CEEECHHHHHHHHHHTT
T ss_pred ------cccceEEEeeHHHHHHHHHHHHcCCC--CCCEEEecCCCCCcHHHHHHHHHH-cC--CcccCHHHHHHHHHhcC
Confidence 35788999999999999999998766 347999999999999999999998 66 33322111100
Q ss_pred ------------CccccccCHHHHH---HhcCcccccccHHHHHHHHHHHHHhccC
Q 015080 367 ------------DYAEVYSDPTKIR---LELNWTAKYTNLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 367 ------------~~~~~~~d~~k~~---~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 407 (413)
......+|+++.. +.+||.+.. .-++.++.+++|+++..+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~-~~~~~l~~~~~~l~~~~~ 415 (427)
T 4f6c_A 361 MYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPT-ITNNWLYHWAQYIKTIFN 415 (427)
T ss_dssp CHHHHHHHHHHHTSEECEECCHHHHHHHHHTTCCCCC-CCHHHHHHHHHHHHHHHC
T ss_pred chhhhhhhhccccCCceeccHHHHHHHHHhcCCCCCC-CCHHHHHHHHHHHHHHHh
Confidence 1113456777665 567998764 346689999999988743
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=276.15 Aligned_cols=239 Identities=20% Similarity=0.281 Sum_probs=195.9
Q ss_pred CCCCCceEEEEEcCCChHHHHHHHHHHHC-CC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhh
Q 015080 65 QHEEGVTHVLVTGGAGYIGSHAALRLLKD-SY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFS 142 (413)
Q Consensus 65 ~~~~~~k~vlITGasG~IG~~la~~L~~~-G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 142 (413)
..+.+ |+|||||||||||++++++|++. |+ +|++++|...+..... ..+ . ..++.++.+|++|.+++.+++
T Consensus 17 ~~~~~-k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~---~~~-~-~~~v~~~~~Dl~d~~~l~~~~- 89 (344)
T 2gn4_A 17 NMLDN-QTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMA---MEF-N-DPRMRFFIGDVRDLERLNYAL- 89 (344)
T ss_dssp CTTTT-CEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHH---HHH-C-CTTEEEEECCTTCHHHHHHHT-
T ss_pred HhhCC-CEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHH---HHh-c-CCCEEEEECCCCCHHHHHHHH-
Confidence 34556 89999999999999999999999 98 9999987533222222 222 1 257999999999999999999
Q ss_pred cCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHH
Q 015080 143 ENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGK 222 (413)
Q Consensus 143 ~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~ 222 (413)
.++|+||||||....+....++...+++|+.++.++++++.+.++++||++||..++ .|.++|+.
T Consensus 90 -~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~--------------~p~~~Y~~ 154 (344)
T 2gn4_A 90 -EGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAA--------------NPINLYGA 154 (344)
T ss_dssp -TTCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGS--------------SCCSHHHH
T ss_pred -hcCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccC--------------CCccHHHH
Confidence 589999999998754444456778999999999999999999999999999996654 23678999
Q ss_pred HHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc-cceeEecccccCC
Q 015080 223 AKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII-AGLKVKGTDYSTA 298 (413)
Q Consensus 223 sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~g~~~~~~ 298 (413)
||+++|.+++.++.+ .|++++++|||+|||+.. .+++.+...+..+. + +++.
T Consensus 155 sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~----------------~~i~~~~~~~~~g~~~-~~i~------- 210 (344)
T 2gn4_A 155 TKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG----------------SVVPFFKKLVQNKASE-IPIT------- 210 (344)
T ss_dssp HHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTT----------------SHHHHHHHHHHHTCCC-EEES-------
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCC----------------CHHHHHHHHHHcCCCc-eEEe-------
Confidence 999999999998865 689999999999999862 56777777776665 4 6654
Q ss_pred CCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHc
Q 015080 299 DGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKAT 352 (413)
Q Consensus 299 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~ 352 (413)
++...++|+|++|+|++++.+++.... +++|+++++ .+++.|+++.+.+.+
T Consensus 211 ~~~~~r~~i~v~D~a~~v~~~l~~~~~--g~~~~~~~~-~~s~~el~~~i~~~~ 261 (344)
T 2gn4_A 211 DIRMTRFWITLDEGVSFVLKSLKRMHG--GEIFVPKIP-SMKMTDLAKALAPNT 261 (344)
T ss_dssp CTTCEEEEECHHHHHHHHHHHHHHCCS--SCEEEECCC-EEEHHHHHHHHCTTC
T ss_pred CCCeEEeeEEHHHHHHHHHHHHhhccC--CCEEecCCC-cEEHHHHHHHHHHhC
Confidence 567788999999999999999997653 379999765 699999999998754
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=270.92 Aligned_cols=260 Identities=14% Similarity=0.159 Sum_probs=203.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC--CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|||||||||||++++++|+++ |++|++++|+..+... +.. .+++++.+|++|++++.+++ .++|+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~----l~~-----~~~~~~~~D~~d~~~l~~~~--~~~d~ 69 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAST----LAD-----QGVEVRHGDYNQPESLQKAF--AGVSK 69 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHH----HHH-----TTCEEEECCTTCHHHHHHHT--TTCSE
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhH----Hhh-----cCCeEEEeccCCHHHHHHHH--hcCCE
Confidence 46999999999999999999999 9999999986543321 111 36889999999999999999 57999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
|||+||.. . .. ++|+.++.++++++++.++++||++||.++|.. ..+|+.+|.++|
T Consensus 70 vi~~a~~~-~-----~~----~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~--------------~~~y~~~K~~~E 125 (287)
T 2jl1_A 70 LLFISGPH-Y-----DN----TLLIVQHANVVKAARDAGVKHIAYTGYAFAEES--------------IIPLAHVHLATE 125 (287)
T ss_dssp EEECCCCC-S-----CH----HHHHHHHHHHHHHHHHTTCSEEEEEEETTGGGC--------------CSTHHHHHHHHH
T ss_pred EEEcCCCC-c-----Cc----hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCC--------------CCchHHHHHHHH
Confidence 99999852 1 11 579999999999999999999999999887631 237999999999
Q ss_pred HHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeeccc
Q 015080 229 DIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308 (413)
Q Consensus 229 ~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~ 308 (413)
.+++. .|++++++||+.++|+... .++. ..+..+. .. .+ .++..++|+|
T Consensus 126 ~~~~~----~~~~~~ilrp~~~~~~~~~---------------~~~~---~~~~~~~--~~-~~------~~~~~~~~i~ 174 (287)
T 2jl1_A 126 YAIRT----TNIPYTFLRNALYTDFFVN---------------EGLR---ASTESGA--IV-TN------AGSGIVNSVT 174 (287)
T ss_dssp HHHHH----TTCCEEEEEECCBHHHHSS---------------GGGH---HHHHHTE--EE-ES------CTTCCBCCBC
T ss_pred HHHHH----cCCCeEEEECCEeccccch---------------hhHH---HHhhCCc--ee-cc------CCCCccCccC
Confidence 99865 7999999999998875310 2222 2222222 22 22 5667889999
Q ss_pred HHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCC--------CCc------------
Q 015080 309 VNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRP--------GDY------------ 368 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------~~~------------ 368 (413)
++|+|++++.++.++.. .+++||+++++.+|+.|+++.+.+.+|.+.++...|... ..+
T Consensus 175 ~~Dva~~~~~~~~~~~~-~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (287)
T 2jl1_A 175 RNELALAAATVLTEEGH-ENKTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVPEPFTEITAAIYD 253 (287)
T ss_dssp HHHHHHHHHHHHTSSSC-TTEEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCC-CCcEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999986543 347999999999999999999999999988876655320 000
Q ss_pred ----cccccCHHHHHHhcCcccccccHHHHHHHHHH
Q 015080 369 ----AEVYSDPTKIRLELNWTAKYTNLQESLEIAWR 400 (413)
Q Consensus 369 ----~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~ 400 (413)
.....|++++++.|| |.+ +++|+|+++++
T Consensus 254 ~~~~~~~~~~~~~~~~~lG--~~~-~l~e~l~~~~~ 286 (287)
T 2jl1_A 254 AISKGEASKTSDDLQKLIG--SLT-PLKETVKQALK 286 (287)
T ss_dssp HHHTTTTCCCCSHHHHHHS--SCC-CHHHHHHHHHT
T ss_pred HHhCCCCcCCchHHHHHhC--CCC-CHHHHHHHHhc
Confidence 124567899999999 556 89999999875
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=289.76 Aligned_cols=274 Identities=18% Similarity=0.175 Sum_probs=204.5
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHC---CCEEEEEecCCCCCchhhhhhhhhcCC-------------CCceEEEEccCC-
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKD---SYRVTIVDNLSRGNIGAVKVLQELFPE-------------PGRLQFIYADLG- 132 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~- 132 (413)
+|+|||||||||||++|+++|++. |++|++++|...... ..+.+.+.... ..++.++.+|++
T Consensus 73 ~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~~ 151 (478)
T 4dqv_A 73 LRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDED-ARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSE 151 (478)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHH-HHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTTS
T ss_pred CCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHH-HHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECCC
Confidence 399999999999999999999999 999999998654332 22222222211 258999999998
Q ss_pred -----CHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCC
Q 015080 133 -----DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMP 207 (413)
Q Consensus 133 -----d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~ 207 (413)
|.+.+.+++ .++|+||||||.... .++...+++|+.++.++++++.+.++++|||+||.++|+.....+
T Consensus 152 ~~~gld~~~~~~~~--~~~D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~~~~~ 225 (478)
T 4dqv_A 152 PDLGLDQPMWRRLA--ETVDLIVDSAAMVNA----FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSA 225 (478)
T ss_dssp GGGGCCHHHHHHHH--HHCCEEEECCSSCSB----SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTSCTTT
T ss_pred cccCCCHHHHHHHH--cCCCEEEECccccCC----cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCccCCCC
Confidence 777899888 479999999998754 345567899999999999999999989999999999999877777
Q ss_pred CCCCCCCCCC-----------ChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHH
Q 015080 208 ITEETPQAPI-----------NPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGA 276 (413)
Q Consensus 208 ~~e~~~~~~~-----------~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 276 (413)
++|+.+..|. +.|+.||+++|.+++.++++.|++++++||+.|||+........ ...++..
T Consensus 226 ~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~--------~~~~~~~ 297 (478)
T 4dqv_A 226 FTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLN--------MSDWVTR 297 (478)
T ss_dssp CCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCC--------TTBHHHH
T ss_pred cCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCC--------HHHHHHH
Confidence 8888765443 34999999999999999888899999999999999864211100 0134444
Q ss_pred HHHHHhc-cccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc---CCCCccEEEecCCCc--ccHHHHHHHHHH
Q 015080 277 CFDAARG-IIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA---QPKKVGIYNVGTGKG--RSVKEFVEACKK 350 (413)
Q Consensus 277 ~~~~~~~-~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~---~~~~~~~yni~~~~~--~s~~e~~~~i~~ 350 (413)
++..... +..+..+.+....-..++..++|+|++|+|++++.++... ....+++||+++++. +++.|+++.+.+
T Consensus 298 l~~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~~~l~~ 377 (478)
T 4dqv_A 298 MVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWLIE 377 (478)
T ss_dssp HHHHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHHHHHHH
T ss_pred HHHHHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHHHHHHH
Confidence 4443332 2210111110000001267889999999999999999862 222357999999988 999999999999
Q ss_pred HcCCCceeE
Q 015080 351 ATSANIKVI 359 (413)
Q Consensus 351 ~~g~~~~~~ 359 (413)
. |.+.+..
T Consensus 378 ~-g~~~~~i 385 (478)
T 4dqv_A 378 A-GYPIRRI 385 (478)
T ss_dssp T-TCSCEEE
T ss_pred c-CCCcccC
Confidence 5 8776544
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=265.32 Aligned_cols=236 Identities=20% Similarity=0.264 Sum_probs=195.0
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
||+|||||||||||++++++|+++|++|++++|...... ..++.++.+|++|++++.+++ .++|+|
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~------------~~~~~~~~~Dl~d~~~~~~~~--~~~d~v 67 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA------------EAHEEIVACDLADAQAVHDLV--KDCDGI 67 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC------------CTTEEECCCCTTCHHHHHHHH--TTCSEE
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc------------CCCccEEEccCCCHHHHHHHH--cCCCEE
Confidence 479999999999999999999999999999988654321 135788999999999999999 579999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCC-CCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEP-EKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~-~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
|||||.. ........+++|+.++.++++++++.++++||++||..+|+.. ...+++|+.+..|.++|+.+|+++|
T Consensus 68 i~~a~~~----~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e 143 (267)
T 3ay3_A 68 IHLGGVS----VERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGE 143 (267)
T ss_dssp EECCSCC----SCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTTSCCCCCSHHHHHHHHHH
T ss_pred EECCcCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Confidence 9999975 2345678899999999999999999888999999999999864 3467899999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeeccc
Q 015080 229 DIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308 (413)
Q Consensus 229 ~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~ 308 (413)
.+++.+..++|++++++||+.+|+.. . ++...++|+|
T Consensus 144 ~~~~~~~~~~gi~~~~lrp~~v~~~~-----------------~--------------------------~~~~~~~~~~ 180 (267)
T 3ay3_A 144 DLASLYYHKFDIETLNIRIGSCFPKP-----------------K--------------------------DARMMATWLS 180 (267)
T ss_dssp HHHHHHHHTTCCCEEEEEECBCSSSC-----------------C--------------------------SHHHHHHBCC
T ss_pred HHHHHHHHHcCCCEEEEeceeecCCC-----------------C--------------------------CCCeeecccc
Confidence 99999888889999999999998421 0 1122357899
Q ss_pred HHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCccccc
Q 015080 309 VNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKY 388 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 388 (413)
++|+|++++.+++.+... .++|++.++.. ....|..++ +.|||+|++
T Consensus 181 ~~dva~~~~~~~~~~~~~-~~~~~~~~~~~-------------------------------~~~~d~~~~-~~lg~~p~~ 227 (267)
T 3ay3_A 181 VDDFMRLMKRAFVAPKLG-CTVVYGASANT-------------------------------ESWWDNDKS-AFLGWVPQD 227 (267)
T ss_dssp HHHHHHHHHHHHHSSCCC-EEEEEECCSCS-------------------------------SCCBCCGGG-GGGCCCCCC
T ss_pred HHHHHHHHHHHHhCCCCC-ceeEecCCCcc-------------------------------ccccCHHHH-HHcCCCCCC
Confidence 999999999999976543 36888764321 123566777 789999998
Q ss_pred ccHHHHHHHHHH
Q 015080 389 TNLQESLEIAWR 400 (413)
Q Consensus 389 ~~~~e~l~~~~~ 400 (413)
+++++++++.+
T Consensus 228 -~~~~~~~~~~~ 238 (267)
T 3ay3_A 228 -SSEIWREEIEQ 238 (267)
T ss_dssp -CGGGGHHHHHH
T ss_pred -CHHHHHHHHHh
Confidence 89999988764
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=259.08 Aligned_cols=224 Identities=16% Similarity=0.173 Sum_probs=176.0
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
||+|||||||||||++++++|+++|++|++++|...+.... ..++.++.+|++|.+++.+++ .++|+|
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----------~~~~~~~~~Dl~d~~~~~~~~--~~~d~v 71 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE----------NEHLKVKKADVSSLDEVCEVC--KGADAV 71 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC----------CTTEEEECCCTTCHHHHHHHH--TTCSEE
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc----------cCceEEEEecCCCHHHHHHHh--cCCCEE
Confidence 58999999999999999999999999999998864432211 257999999999999999999 679999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAED 229 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 229 (413)
|||||... .....+++|+.++.++++++++.++++||++||.++|+.... ...|+.+..|.+.|+.+|.++|.
T Consensus 72 i~~a~~~~------~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~-~~~~~~~~~p~~~Y~~sK~~~e~ 144 (227)
T 3dhn_A 72 ISAFNPGW------NNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPG-LRLMDSGEVPENILPGVKALGEF 144 (227)
T ss_dssp EECCCC------------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETT-EEGGGTTCSCGGGHHHHHHHHHH
T ss_pred EEeCcCCC------CChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCC-CccccCCcchHHHHHHHHHHHHH
Confidence 99998642 122367889999999999999999999999999887754433 23456677788999999999999
Q ss_pred HHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccH
Q 015080 230 IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 230 ~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
+++.++++.|++++++||+.+|||+.... .+. .... ..+. .++. ++|+|+
T Consensus 145 ~~~~~~~~~~~~~~ilrp~~v~g~~~~~~-------------~~~-------~~~~--~~~~-------~~~~-~~~i~~ 194 (227)
T 3dhn_A 145 YLNFLMKEKEIDWVFFSPAADMRPGVRTG-------------RYR-------LGKD--DMIV-------DIVG-NSHISV 194 (227)
T ss_dssp HHHTGGGCCSSEEEEEECCSEEESCCCCC-------------CCE-------EESS--BCCC-------CTTS-CCEEEH
T ss_pred HHHHHhhccCccEEEEeCCcccCCCcccc-------------cee-------ecCC--Cccc-------CCCC-CcEEeH
Confidence 99999888999999999999999974321 110 1111 1111 2222 799999
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEecCCCcccHHH
Q 015080 310 NDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKE 343 (413)
Q Consensus 310 ~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e 343 (413)
+|+|++++.+++++... +++|+++++++.++.+
T Consensus 195 ~Dva~ai~~~l~~~~~~-g~~~~~~~~~~~~~~~ 227 (227)
T 3dhn_A 195 EDYAAAMIDELEHPKHH-QERFTIGYLEHHHHHH 227 (227)
T ss_dssp HHHHHHHHHHHHSCCCC-SEEEEEECCSCCC---
T ss_pred HHHHHHHHHHHhCcccc-CcEEEEEeehhcccCC
Confidence 99999999999987754 4899999999988753
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=267.00 Aligned_cols=260 Identities=13% Similarity=0.148 Sum_probs=197.1
Q ss_pred EEEEEcCCChHHHHHHHHHHHC--CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
+|||||||||||++++++|+++ |++|++++|+..+... +.. .++.++.+|++|++++.+++ .++|+|
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~----~~~-----~~~~~~~~D~~d~~~~~~~~--~~~d~v 69 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQA----LAA-----QGITVRQADYGDEAALTSAL--QGVEKL 69 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHH----HHH-----TTCEEEECCTTCHHHHHHHT--TTCSEE
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhh----hhc-----CCCeEEEcCCCCHHHHHHHH--hCCCEE
Confidence 4899999999999999999999 9999999986543321 111 36889999999999999999 679999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAED 229 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 229 (413)
||+||... +.|+.+++++++++++.++++||++||.++|. ...+|+.+|.++|.
T Consensus 70 i~~a~~~~------------~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~--------------~~~~y~~sK~~~e~ 123 (286)
T 2zcu_A 70 LLISSSEV------------GQRAPQHRNVINAAKAAGVKFIAYTSLLHADT--------------SPLGLADEHIETEK 123 (286)
T ss_dssp EECC--------------------CHHHHHHHHHHHHTCCEEEEEEETTTTT--------------CCSTTHHHHHHHHH
T ss_pred EEeCCCCc------------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC--------------CcchhHHHHHHHHH
Confidence 99998521 14788999999999999999999999988762 02479999999999
Q ss_pred HHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccH
Q 015080 230 IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 230 ~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
++++ .|++++++||+.++++. ...+......+ . +. .+ .++..++++|+
T Consensus 124 ~~~~----~~~~~~ilrp~~~~~~~-------------------~~~~~~~~~~~-~-~~-~~------~~~~~~~~i~~ 171 (286)
T 2zcu_A 124 MLAD----SGIVYTLLRNGWYSENY-------------------LASAPAALEHG-V-FI-GA------AGDGKIASATR 171 (286)
T ss_dssp HHHH----HCSEEEEEEECCBHHHH-------------------HTTHHHHHHHT-E-EE-ES------CTTCCBCCBCH
T ss_pred HHHH----cCCCeEEEeChHHhhhh-------------------HHHhHHhhcCC-c-ee-cc------CCCCccccccH
Confidence 9875 68999999998766532 11122222222 2 32 22 56778999999
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCC--------CCc-------------
Q 015080 310 NDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRP--------GDY------------- 368 (413)
Q Consensus 310 ~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------~~~------------- 368 (413)
+|+|++++.++..+.. .+++||+++++.+|+.|+++.+.+.+|.+.++...|... ..+
T Consensus 172 ~Dva~~~~~~~~~~~~-~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (286)
T 2zcu_A 172 ADYAAAAARVISEAGH-EGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVG 250 (286)
T ss_dssp HHHHHHHHHHHHSSSC-TTCEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCC-CCceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999987543 347999999989999999999999999988776655321 100
Q ss_pred ---cccccCHHHHHHhcCcccccccHHHHHHHHHHHHH
Q 015080 369 ---AEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQK 403 (413)
Q Consensus 369 ---~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~ 403 (413)
.....|++++++.|||.+ + +++|+|+++++||+
T Consensus 251 ~~~~~~~~~~~~~~~~lg~~~-~-~~~e~l~~~~~~~~ 286 (286)
T 2zcu_A 251 ASKGGLFDDSKTLSKLIGHPT-T-TLAESVSHLFNVNN 286 (286)
T ss_dssp HHTTTTCCCCCHHHHHHTSCC-C-CHHHHHHGGGC---
T ss_pred HhCCCCccCchHHHHHhCcCC-C-CHHHHHHHHHhhcC
Confidence 124567899998999854 4 89999999999874
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=292.72 Aligned_cols=309 Identities=17% Similarity=0.126 Sum_probs=223.1
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhh---hhhhhc------CCCCceEEEEccCCCHHHHHH
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVK---VLQELF------PEPGRLQFIYADLGDAKAVNK 139 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~------~~~~~~~~~~~Dl~d~~~~~~ 139 (413)
.||+|||||||||||++|+++|.+.|++|++++|.........+ .++... ....++.++.+|++|++.+.
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~- 227 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV- 227 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-
T ss_pred CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-
Confidence 45899999999999999999999999999999986553222221 111110 01368999999999988777
Q ss_pred HhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCC-----CCCCCCCCCCC-
Q 015080 140 FFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGE-----PEKMPITEETP- 213 (413)
Q Consensus 140 ~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~-----~~~~~~~e~~~- 213 (413)
+. .++|+||||||.... ..++...+++|+.++.++++++++ +.++|||+||.++ |. ....+++|+++
T Consensus 228 ~~--~~~D~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~ 300 (508)
T 4f6l_B 228 LP--ENMDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEADVY 300 (508)
T ss_dssp CS--SCCSEEEECCCC-----------CCHHHHHHHHHHHHHHHHT-TTCEEEEEEESCT-TSEECTTCSCCEECTTCSC
T ss_pred Cc--cCCCEEEECCceecC---CCCHHHHhhhHHHHHHHHHHHHHh-CCCcEEEeCChhh-ccCCccCCcCccccccccc
Confidence 33 789999999997642 335566788999999999999998 6789999999988 43 23446777776
Q ss_pred --CCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 214 --QAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 214 --~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
..+.+.|+.||+++|.+++.+++ .|++++++||+.|||+...+.+.... ...++..++........ ++.
T Consensus 301 ~~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~------~~~~~~~~i~~~~~~~~-~~~- 371 (508)
T 4f6l_B 301 KGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNI------KTNRFSMVMNDLLQLDC-IGV- 371 (508)
T ss_dssp SSBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTC------TTCHHHHHHHHHTTCSE-EET-
T ss_pred ccccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCc------chHHHHHHHHHHHHcCC-CCC-
Confidence 44788999999999999999865 79999999999999997543211100 01334555555554433 332
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCC------
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRP------ 365 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~------ 365 (413)
+ .++..++|+|++|+|++++.++..+. .+++||+++++++++.|+++.+.+.. .+....+.+.
T Consensus 372 ~------~g~~~~~~v~v~DvA~ai~~~~~~~~--~~~~~nl~~~~~~s~~el~~~i~~~~---~~~~~~~~w~~~l~~~ 440 (508)
T 4f6l_B 372 S------MAEMPVDFSFVDTTARQIVALAQVNT--PQIIYHVLSPNKMPVKSLLECVKRKE---IELVSDESFNEILQKQ 440 (508)
T ss_dssp T------GGGSEEECEEHHHHHHHHHHHTTBCC--SCSEEEESCSCEEEHHHHHHHHHSSC---CEEECHHHHHHHHHTT
T ss_pred C------ccCceEEEEcHHHHHHHHHHHHhCCC--CCCEEEeCCCCCCCHHHHHHHHHHcC---CcccCHHHHHHHHHhc
Confidence 1 46788999999999999999998766 34799999999999999999999764 3322211110
Q ss_pred ------------CCccccccCHHHHH---HhcCcccccccHHHHHHHHHHHHHhcc
Q 015080 366 ------------GDYAEVYSDPTKIR---LELNWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 366 ------------~~~~~~~~d~~k~~---~~lG~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
.......+|+++.. +.+||.+.. ..++.++++++|+++..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~-~~~~~l~~~~~~~~~~~ 495 (508)
T 4f6l_B 441 DMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPT-ITNNWLYHWAQYIKTIF 495 (508)
T ss_dssp CCHHHHHHHHTGGGSEECEECCHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHHHHH
T ss_pred CCccchhcccccccCcceecchHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 01123456766665 457998775 45888999999998763
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=258.20 Aligned_cols=213 Identities=16% Similarity=0.187 Sum_probs=182.9
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
||+||||||+||||++++++|+++|++|++++|...... ..+++++.+|++|.+++.+++ .++|+|
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~------------~~~~~~~~~Dl~d~~~~~~~~--~~~D~v 68 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA------------GPNEECVQCDLADANAVNAMV--AGCDGI 68 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC------------CTTEEEEECCTTCHHHHHHHH--TTCSEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc------------CCCCEEEEcCCCCHHHHHHHH--cCCCEE
Confidence 489999999999999999999999999999998654432 357999999999999999999 589999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCC-CCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEP-EKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~-~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
|||||+. .....+..+++|+.++.++++++++.+.++||++||..+|+.. ...+++|+.+..|.+.|+.||+++|
T Consensus 69 i~~Ag~~----~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~e 144 (267)
T 3rft_A 69 VHLGGIS----VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGE 144 (267)
T ss_dssp EECCSCC----SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTTSCCCCCSHHHHHHHHHH
T ss_pred EECCCCc----CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Confidence 9999984 3456788999999999999999999999999999999999743 4557888899999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeeccc
Q 015080 229 DIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308 (413)
Q Consensus 229 ~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~ 308 (413)
.+++.+++++|+++++|||+.|+|+.. ++...++|++
T Consensus 145 ~~~~~~a~~~g~~~~~vr~~~v~~~~~-------------------------------------------~~~~~~~~~~ 181 (267)
T 3rft_A 145 NLARMYFDKFGQETALVRIGSCTPEPN-------------------------------------------NYRMLSTWFS 181 (267)
T ss_dssp HHHHHHHHHHCCCEEEEEECBCSSSCC-------------------------------------------STTHHHHBCC
T ss_pred HHHHHHHHHhCCeEEEEEeecccCCCC-------------------------------------------CCCceeeEEc
Confidence 999999988999999999999998631 2334567899
Q ss_pred HHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHH
Q 015080 309 VNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEF 344 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~ 344 (413)
++|+++++..+++.+..+. .++++.++++.++.++
T Consensus 182 ~~d~a~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~ 216 (267)
T 3rft_A 182 HDDFVSLIEAVFRAPVLGC-PVVWGASANDAGWWDN 216 (267)
T ss_dssp HHHHHHHHHHHHHCSCCCS-CEEEECCCCTTCCBCC
T ss_pred HHHHHHHHHHHHhCCCCCc-eEEEEeCCCCCCcccC
Confidence 9999999999999766543 5788877776665544
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=273.43 Aligned_cols=251 Identities=16% Similarity=0.201 Sum_probs=201.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
|+|||||||||||++|+++|+++|+ +|++++|. +|++++.++++ ++|+|
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~----------------------------~d~~~l~~~~~--~~d~V 50 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ----------------------------TKEEELESALL--KADFI 50 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT----------------------------CCHHHHHHHHH--HCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC----------------------------CCHHHHHHHhc--cCCEE
Confidence 4799999999999999999999999 88775431 78889999984 69999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
||+||...+ +++...+++|+.++.++++++++.+++ ++|++||.++|+ .++|+.+|+++|
T Consensus 51 ih~a~~~~~----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~---------------~~~Y~~sK~~~E 111 (369)
T 3st7_A 51 VHLAGVNRP----EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ---------------DNPYGESKLQGE 111 (369)
T ss_dssp EECCCSBCT----TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS---------------CSHHHHHHHHHH
T ss_pred EECCcCCCC----CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC---------------CCCchHHHHHHH
Confidence 999997653 244556778999999999999999877 999999999986 578999999999
Q ss_pred HHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeeccc
Q 015080 229 DIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308 (413)
Q Consensus 229 ~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~ 308 (413)
.+++.++++.|++++++||+.+|||+..+.. +.+++.++..+..+.+ +.+. +++..++|+|
T Consensus 112 ~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~i~ 172 (369)
T 3st7_A 112 QLLREYAEEYGNTVYIYRWPNLFGKWCKPNY-----------NSVIATFCYKIARNEE-IQVN-------DRNVELTLNY 172 (369)
T ss_dssp HHHHHHHHHHCCCEEEEEECEEECTTCCTTS-----------SCHHHHHHHHHHTTCC-CCCS-------CTTCEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEECCceeCCCCCCCc-----------chHHHHHHHHHHcCCC-eEec-------CCCeEEEEEE
Confidence 9999999988999999999999999754321 2678888888877765 4442 6788899999
Q ss_pred HHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCccccc
Q 015080 309 VNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKY 388 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 388 (413)
++|+|++++.+++.+....+++||+++++.+|+.|+++.+.+.+|.+.+....+.. . ..........+||.|..
T Consensus 173 v~Dva~~~~~~l~~~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~--~----~~~~~l~~~~l~~~p~~ 246 (369)
T 3st7_A 173 VDDIVAEIKRAIEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLD--N----LFEKDLYSTYLSYLPST 246 (369)
T ss_dssp HHHHHHHHHHHHHTCCCEETTEECCSCCEEEEHHHHHHHHHHHHHHHHHTCCCCTT--S----HHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHhCCcccCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccCCCC--C----HHHHHHHHHHhcccCCc
Confidence 99999999999998765224799999999999999999999999977554432211 1 11113344458888876
Q ss_pred ccHHHHHH
Q 015080 389 TNLQESLE 396 (413)
Q Consensus 389 ~~~~e~l~ 396 (413)
++.++++
T Consensus 247 -~~~~~l~ 253 (369)
T 3st7_A 247 -DFSYPLL 253 (369)
T ss_dssp -CSCCCCC
T ss_pred -ceeechh
Confidence 6655443
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=261.63 Aligned_cols=281 Identities=12% Similarity=0.157 Sum_probs=206.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||||+||++|+++|++.|++|++++|.........+.+..+. ..+++++.+|++|.+++.+++++.++|+||
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~--~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 88 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALE--DKGAIIVYGLINEQEAMEKILKEHEIDIVV 88 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHH--HTTCEEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHH--hCCcEEEEeecCCHHHHHHHHhhCCCCEEE
Confidence 789999999999999999999999999999987644333333333322 257999999999999999999656899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAED 229 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 229 (413)
|+||.. |+.++.++++++++.+ +++||+ | +||. +.+|..+..|.+.|+.+|.++|.
T Consensus 89 ~~a~~~---------------n~~~~~~l~~aa~~~g~v~~~v~-S---~~g~----~~~e~~~~~p~~~y~~sK~~~e~ 145 (346)
T 3i6i_A 89 STVGGE---------------SILDQIALVKAMKAVGTIKRFLP-S---EFGH----DVNRADPVEPGLNMYREKRRVRQ 145 (346)
T ss_dssp ECCCGG---------------GGGGHHHHHHHHHHHCCCSEEEC-S---CCSS----CTTTCCCCTTHHHHHHHHHHHHH
T ss_pred ECCchh---------------hHHHHHHHHHHHHHcCCceEEee-c---ccCC----CCCccCcCCCcchHHHHHHHHHH
Confidence 999862 7788999999999998 999986 3 3442 35566677788899999999999
Q ss_pred HHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccH
Q 015080 230 IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 230 ~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
++++ .|++++++|||.++|..... +.... ........ +.+.| +++..++|+|+
T Consensus 146 ~l~~----~g~~~tivrpg~~~g~~~~~---------------~~~~~-~~~~~~~~-~~~~g------~g~~~~~~i~~ 198 (346)
T 3i6i_A 146 LVEE----SGIPFTYICCNSIASWPYYN---------------NIHPS-EVLPPTDF-FQIYG------DGNVKAYFVAG 198 (346)
T ss_dssp HHHH----TTCCBEEEECCEESSCCCSC---------------C------CCCCSSC-EEEET------TSCCCEEEECH
T ss_pred HHHH----cCCCEEEEEecccccccCcc---------------ccccc-cccCCCce-EEEcc------CCCceEEecCH
Confidence 9877 78999999999999964221 11100 01112223 66777 88889999999
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEecC-CCcccHHHHHHHHHHHcCCCceeEecCCCC--------CCcc-----------
Q 015080 310 NDLVDAHVKALERAQPKKVGIYNVGT-GKGRSVKEFVEACKKATSANIKVIYEPRRP--------GDYA----------- 369 (413)
Q Consensus 310 ~Dva~a~~~~~~~~~~~~~~~yni~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------~~~~----------- 369 (413)
+|+|++++.++..+... +++|++++ ++.+|+.|+++.+.+.+|.+.++...+... ..+.
T Consensus 199 ~Dva~~~~~~l~~~~~~-~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 277 (346)
T 3i6i_A 199 TDIGKFTMKTVDDVRTL-NKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIF 277 (346)
T ss_dssp HHHHHHHHHHTTCGGGT-TEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHHHHHTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccc-CeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHHHHHHhcCCChhhhHHHHHHHHh
Confidence 99999999999976542 37899975 578999999999999999998876654310 0000
Q ss_pred ----ccccCH-----HHHHHh-cCcccccccHHHHHHHHHHHHHhcc
Q 015080 370 ----EVYSDP-----TKIRLE-LNWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 370 ----~~~~d~-----~k~~~~-lG~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
...++. .++.+. -+++++ +++|.|++++.|++++.
T Consensus 278 ~~g~~~~~~~~~~~~~~~~~~~p~~~~t--~~~e~l~~~~~~~~~~~ 322 (346)
T 3i6i_A 278 IKGCQVNFSIDGPEDVEVTTLYPEDSFR--TVEECFGEYIVKMEEKQ 322 (346)
T ss_dssp TTCTTTSSCCCSTTEEEHHHHSTTCCCC--CHHHHHHHHHCC-----
T ss_pred ccCCCcccccCCCCcccHHHhCCCCCcC--cHHHHHHHHHHHhhccc
Confidence 000111 123323 256554 89999999999998764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-31 Score=243.62 Aligned_cols=217 Identities=18% Similarity=0.210 Sum_probs=170.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCce-EEEEccCCCHHHHHHHhhcC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRL-QFIYADLGDAKAVNKFFSEN 144 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~d~~~~~~~~~~~ 144 (413)
.+++ |+|||||||||||++++++|+++|++|++++|+..+.. .+.. .++ .++.+|++ +++.+++ .
T Consensus 18 ~l~~-~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~----~~~~-----~~~~~~~~~Dl~--~~~~~~~--~ 83 (236)
T 3e8x_A 18 YFQG-MRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGP----ELRE-----RGASDIVVANLE--EDFSHAF--A 83 (236)
T ss_dssp ---C-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHH----HHHH-----TTCSEEEECCTT--SCCGGGG--T
T ss_pred CcCC-CeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHH----HHHh-----CCCceEEEcccH--HHHHHHH--c
Confidence 4667 89999999999999999999999999999987543221 1211 367 99999999 6677777 6
Q ss_pred CCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHH
Q 015080 145 AFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAK 224 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK 224 (413)
++|+||||||... ..+++..+++|+.++.++++++++.++++||++||...+.. +..+ .+...|+.+|
T Consensus 84 ~~D~vi~~ag~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~-------~~~~-~~~~~Y~~sK 151 (236)
T 3e8x_A 84 SIDAVVFAAGSGP----HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDP-------DQGP-MNMRHYLVAK 151 (236)
T ss_dssp TCSEEEECCCCCT----TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCG-------GGSC-GGGHHHHHHH
T ss_pred CCCEEEECCCCCC----CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCC-------CCCh-hhhhhHHHHH
Confidence 8999999999753 35678899999999999999999999999999999554321 1112 4577899999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceee
Q 015080 225 KMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304 (413)
Q Consensus 225 ~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 304 (413)
+++|.+++. .|+++++|||+.++|+...+. +.... .....+
T Consensus 152 ~~~e~~~~~----~gi~~~~lrpg~v~~~~~~~~-----------------------------~~~~~------~~~~~~ 192 (236)
T 3e8x_A 152 RLADDELKR----SSLDYTIVRPGPLSNEESTGK-----------------------------VTVSP------HFSEIT 192 (236)
T ss_dssp HHHHHHHHH----SSSEEEEEEECSEECSCCCSE-----------------------------EEEES------SCSCCC
T ss_pred HHHHHHHHH----CCCCEEEEeCCcccCCCCCCe-----------------------------EEecc------CCCccc
Confidence 999998873 899999999999999853210 22222 344467
Q ss_pred ecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHH
Q 015080 305 DYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACK 349 (413)
Q Consensus 305 ~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~ 349 (413)
++++++|+|++++.+++++.. .+++||++++ ..++.|+++.+.
T Consensus 193 ~~i~~~Dva~~~~~~~~~~~~-~g~~~~v~~~-~~~~~e~~~~i~ 235 (236)
T 3e8x_A 193 RSITRHDVAKVIAELVDQQHT-IGKTFEVLNG-DTPIAKVVEQLG 235 (236)
T ss_dssp CCEEHHHHHHHHHHHTTCGGG-TTEEEEEEEC-SEEHHHHHHTC-
T ss_pred CcEeHHHHHHHHHHHhcCccc-cCCeEEEeCC-CcCHHHHHHHhc
Confidence 999999999999999997643 3479999887 699999998765
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=240.53 Aligned_cols=209 Identities=13% Similarity=0.172 Sum_probs=169.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC-HHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD-AKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~dvv 149 (413)
|+|||||||||||++++++|+++|++|++++|+..+.... .+++++.+|++| ++++.+++ .++|+|
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-----------~~~~~~~~D~~d~~~~~~~~~--~~~d~v 67 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY-----------NNVKAVHFDVDWTPEEMAKQL--HGMDAI 67 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC-----------TTEEEEECCTTSCHHHHHTTT--TTCSEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc-----------CCceEEEecccCCHHHHHHHH--cCCCEE
Confidence 4799999999999999999999999999999865432211 578999999999 99999999 689999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAED 229 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 229 (413)
|||||.... ..+++|+.++.++++++++.++++||++||.++++.. +..| .+..|.+.|+.+|.++|.
T Consensus 68 i~~ag~~~~--------~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~---~~~e-~~~~~~~~Y~~sK~~~e~ 135 (219)
T 3dqp_A 68 INVSGSGGK--------SLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPE---KWIG-AGFDALKDYYIAKHFADL 135 (219)
T ss_dssp EECCCCTTS--------SCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGG---GCCS-HHHHHTHHHHHHHHHHHH
T ss_pred EECCcCCCC--------CcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCC---cccc-cccccccHHHHHHHHHHH
Confidence 999997642 2566799999999999999999999999998776532 2334 445567899999999999
Q ss_pred HHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccH
Q 015080 230 IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 230 ~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
+++ ++.|+++++|||+.+||+...+. +.. +...++++++
T Consensus 136 ~~~---~~~~i~~~ilrp~~v~g~~~~~~-----------------------------~~~---------~~~~~~~i~~ 174 (219)
T 3dqp_A 136 YLT---KETNLDYTIIQPGALTEEEATGL-----------------------------IDI---------NDEVSASNTI 174 (219)
T ss_dssp HHH---HSCCCEEEEEEECSEECSCCCSE-----------------------------EEE---------SSSCCCCEEH
T ss_pred HHH---hccCCcEEEEeCceEecCCCCCc-----------------------------ccc---------CCCcCCcccH
Confidence 986 34899999999999999853210 111 2355789999
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHH
Q 015080 310 NDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEA 347 (413)
Q Consensus 310 ~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~ 347 (413)
+|+|++++.++.++... +++||++++ ..++.|+++.
T Consensus 175 ~Dva~~i~~~l~~~~~~-g~~~~i~~g-~~~~~e~~~~ 210 (219)
T 3dqp_A 175 GDVADTIKELVMTDHSI-GKVISMHNG-KTAIKEALES 210 (219)
T ss_dssp HHHHHHHHHHHTCGGGT-TEEEEEEEC-SEEHHHHHHT
T ss_pred HHHHHHHHHHHhCcccc-CcEEEeCCC-CccHHHHHHH
Confidence 99999999999976542 479999877 4899988763
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-30 Score=239.86 Aligned_cols=258 Identities=14% Similarity=0.147 Sum_probs=187.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
|+||||||||+||++++++|++. |++|++++|+..+..... ..+++++.+|++|++++.+++ .++|+|
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~---------~~~v~~~~~D~~d~~~l~~~~--~~~d~v 69 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDW---------RGKVSVRQLDYFNQESMVEAF--KGMDTV 69 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGG---------BTTBEEEECCTTCHHHHHHHT--TTCSEE
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhh---------hCCCEEEEcCCCCHHHHHHHH--hCCCEE
Confidence 46999999999999999999998 999999988654332211 257999999999999999999 689999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAED 229 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 229 (413)
|||||.... ...|+.+++++++++++.++++||++||... .. ..+ . .+...+..+|.
T Consensus 70 i~~a~~~~~----------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~---~~------~~~---~-~~~~~~~~~e~ 126 (289)
T 3e48_A 70 VFIPSIIHP----------SFKRIPEVENLVYAAKQSGVAHIIFIGYYAD---QH------NNP---F-HMSPYFGYASR 126 (289)
T ss_dssp EECCCCCCS----------HHHHHHHHHHHHHHHHHTTCCEEEEEEESCC---ST------TCC---S-TTHHHHHHHHH
T ss_pred EEeCCCCcc----------chhhHHHHHHHHHHHHHcCCCEEEEEcccCC---CC------CCC---C-ccchhHHHHHH
Confidence 999986532 1348899999999999999999999999432 11 111 1 12233334444
Q ss_pred HHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccH
Q 015080 230 IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 230 ~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
.+. +.|+++++|||+.++|+. ...+......+. ...+ .++..++|+++
T Consensus 127 ~~~----~~g~~~~ilrp~~~~~~~-------------------~~~~~~~~~~~~---~~~~------~g~~~~~~i~~ 174 (289)
T 3e48_A 127 LLS----TSGIDYTYVRMAMYMDPL-------------------KPYLPELMNMHK---LIYP------AGDGRINYITR 174 (289)
T ss_dssp HHH----HHCCEEEEEEECEESTTH-------------------HHHHHHHHHHTE---ECCC------CTTCEEEEECH
T ss_pred HHH----HcCCCEEEEecccccccc-------------------HHHHHHHHHCCC---EecC------CCCceeeeEEH
Confidence 443 379999999999999863 222222222221 1122 67788999999
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCC-------C-CCcc------------
Q 015080 310 NDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRR-------P-GDYA------------ 369 (413)
Q Consensus 310 ~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-------~-~~~~------------ 369 (413)
+|+|++++.++..+... +++||++ ++.+|+.|+++.+.+.+|++.++...+.. . ....
T Consensus 175 ~Dva~~~~~~l~~~~~~-g~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 252 (289)
T 3e48_A 175 NDIARGVIAIIKNPDTW-GKRYLLS-GYSYDMKELAAILSEASGTEIKYEPVSLETFAEMYDEPKGFGALLASMYHAGAR 252 (289)
T ss_dssp HHHHHHHHHHHHCGGGT-TCEEEEC-CEEEEHHHHHHHHHHHHTSCCEECCCCHHHHHHHTCCSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcC-CceEEeC-CCcCCHHHHHHHHHHHHCCceeEEeCCHHHHHHHhcCCccHHHHHHHHHHHHHC
Confidence 99999999999976543 4799999 99999999999999999998776544321 0 1100
Q ss_pred -ccccCHHHHHHhcCcccccccHHHHHHHH
Q 015080 370 -EVYSDPTKIRLELNWTAKYTNLQESLEIA 398 (413)
Q Consensus 370 -~~~~d~~k~~~~lG~~p~~~~~~e~l~~~ 398 (413)
....+++.+++.+|+.|+ ++++.+++.
T Consensus 253 g~~~~~~~~~~~~~G~~p~--~~~~~~~~~ 280 (289)
T 3e48_A 253 GLLDQESNDFKQLVNDQPQ--TLQSFLQEN 280 (289)
T ss_dssp TTTCCCCSHHHHHHSSCCC--CHHHHHHC-
T ss_pred CCccccCchHHHHhCCCCC--CHHHHHHHH
Confidence 122456677888999887 687766543
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=239.54 Aligned_cols=251 Identities=18% Similarity=0.140 Sum_probs=184.0
Q ss_pred CCCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 65 QHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 65 ~~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+++ |+||||||+||||++++++|+++|++|++++|+....++..+.+.+.......+.++.+|++|++++++++++
T Consensus 7 ~~l~~-k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 85 (281)
T 3svt_A 7 LSFQD-RTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAV 85 (281)
T ss_dssp -CCTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHH
T ss_pred cCcCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 34567 9999999999999999999999999999998765544444455544332223789999999999999988865
Q ss_pred ----CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
.++|+||||||+... .. ..++.+..+++|+.++.+++++ +.+.+.++||++||...+...
T Consensus 86 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 158 (281)
T 3svt_A 86 TAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTH------- 158 (281)
T ss_dssp HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCC-------
T ss_pred HHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCC-------
Confidence 589999999997322 11 2233456788999997666555 445566799999998876432
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
.+..+|+.||++.+.+++.++.+ .|+++++++||.|.++..... ..............+
T Consensus 159 ----~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~-------------~~~~~~~~~~~~~~p- 220 (281)
T 3svt_A 159 ----RWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAI-------------TESAELSSDYAMCTP- 220 (281)
T ss_dssp ----TTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHH-------------HTCHHHHHHHHHHCS-
T ss_pred ----CCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhc-------------ccCHHHHHHHHhcCC-
Confidence 23678999999999999999887 579999999999998642100 000111111111111
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCccc-HHHHHHHHHHHcCCCc
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGRS-VKEFVEACKKATSANI 356 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~s-~~e~~~~i~~~~g~~~ 356 (413)
...+.+++|+|+++++++..... ..+++|++.+|...+ ..++.+.+.+.+|.+.
T Consensus 221 ---------------~~r~~~~~dva~~~~~l~s~~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~ 276 (281)
T 3svt_A 221 ---------------LPRQGEVEDVANMAMFLLSDAASFVTGQVINVDGGQMLRRGPDFSAMLEPVFGRDA 276 (281)
T ss_dssp ---------------SSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGSCCCCCHHHHHHHHCTTG
T ss_pred ---------------CCCCCCHHHHHHHHHHHhCcccCCCCCCEEEeCCChhcccCCcchhccccccCCcc
Confidence 23567899999999999875432 245899999888876 7788888888888654
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-30 Score=237.02 Aligned_cols=246 Identities=14% Similarity=0.094 Sum_probs=178.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+||||||+||||++++++|+++|++|++++|+....+ +...+. +.++.++.+|++|.+++++++++ .+
T Consensus 6 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~---~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 79 (281)
T 3m1a_A 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALD---DLVAAY---PDRAEAISLDVTDGERIDVVAADVLARYGR 79 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGH---HHHHHC---TTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHhc---cCCceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999999999987543332 222222 35799999999999999988865 48
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||+..... ..++.+..+++|+.+ ++.+++.+++.+.++||++||...+. +..+.
T Consensus 80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~~~~ 148 (281)
T 3m1a_A 80 VDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQL-----------SFAGF 148 (281)
T ss_dssp CSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC-----------CCTTC
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccC-----------CCCCc
Confidence 999999999865433 223345578899999 88888888888889999999977653 23347
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
.+|+.||++.|.+++.++.+ +|+++++++||.|.++........... . ...+....... .+ +.
T Consensus 149 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~-~---~~~~~~~~~~~----~~-~~----- 214 (281)
T 3m1a_A 149 SAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSE-E---NPAYAEKVGPT----RQ-LV----- 214 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECC-B---CTTTHHHHHHH----HH-HH-----
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCC-c---chhhHHHhHHH----HH-HH-----
Confidence 89999999999999999988 799999999999998753211000000 0 00111111110 00 00
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcC
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATS 353 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g 353 (413)
......++++++|+|++++.+++.+..+ ..|+++++....+.+....+.+.++
T Consensus 215 ----~~~~~~~~~~~~dva~a~~~~~~~~~~~--~~~~l~s~~~~~i~g~~~~i~~~~~ 267 (281)
T 3m1a_A 215 ----QGSDGSQPGDPAKAAAAIRLALDTEKTP--LRLALGGDAVDFLTGHLDSVRAELT 267 (281)
T ss_dssp ----HC-----CBCHHHHHHHHHHHHHSSSCC--SEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred ----hhccCCCCCCHHHHHHHHHHHHhCCCCC--eEEecCchHHHHHHHHHHHHHHHHH
Confidence 1122346789999999999999977654 6999988877777777777777655
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-30 Score=230.14 Aligned_cols=218 Identities=13% Similarity=0.048 Sum_probs=159.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++++++|+++|++|++++|+..+ .. .+. ..+++++.+|++|+++ +.+ .++|+||
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~---~~----~~~--~~~~~~~~~D~~d~~~--~~~--~~~d~vi 67 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQK---AA----DRL--GATVATLVKEPLVLTE--ADL--DSVDAVV 67 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HH----HHT--CTTSEEEECCGGGCCH--HHH--TTCSEEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccc---cc----ccc--CCCceEEecccccccH--hhc--ccCCEEE
Confidence 459999999999999999999999999999875322 11 111 2578999999999988 566 6899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCC-CC--CCCCCCCCCCCCChhHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEP-EK--MPITEETPQAPINPYGKAKKMA 227 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~-~~--~~~~e~~~~~~~~~Y~~sK~~~ 227 (413)
||||...... ..+.|+.++++++++|++.+ +++|++||.+++... .. .+.+|...+.|.+.|+.+|.+.
T Consensus 68 ~~ag~~~~~~-------~~~~n~~~~~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~ 139 (224)
T 3h2s_A 68 DALSVPWGSG-------RGYLHLDFATHLVSLLRNSD-TLAVFILGSASLAMPGADHPMILDFPESAASQPWYDGALYQY 139 (224)
T ss_dssp ECCCCCTTSS-------CTHHHHHHHHHHHHTCTTCC-CEEEEECCGGGSBCTTCSSCGGGGCCGGGGGSTTHHHHHHHH
T ss_pred ECCccCCCcc-------hhhHHHHHHHHHHHHHHHcC-CcEEEEecceeeccCCCCccccccCCCCCccchhhHHHHHHH
Confidence 9999752211 24679999999999999998 899999997655432 22 1333444445588999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecc
Q 015080 228 EDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307 (413)
Q Consensus 228 e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i 307 (413)
|. +..+.++.|+++++|||+.+||++... .+ ...... +. .+...++++
T Consensus 140 e~-~~~~~~~~~i~~~ivrp~~v~g~~~~~--------------~~-------~~~~~~-~~---------~~~~~~~~i 187 (224)
T 3h2s_A 140 YE-YQFLQMNANVNWIGISPSEAFPSGPAT--------------SY-------VAGKDT-LL---------VGEDGQSHI 187 (224)
T ss_dssp HH-HHHHTTCTTSCEEEEEECSBCCCCCCC--------------CE-------EEESSB-CC---------CCTTSCCBC
T ss_pred HH-HHHHHhcCCCcEEEEcCccccCCCccc--------------Cc-------eecccc-cc---------cCCCCCceE
Confidence 95 455666689999999999999985321 00 000001 11 223446899
Q ss_pred cHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHH
Q 015080 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVK 342 (413)
Q Consensus 308 ~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~ 342 (413)
+++|+|++++.+++++... +++|++++.++.++.
T Consensus 188 ~~~DvA~~~~~~l~~~~~~-g~~~~~~~~~~~~~~ 221 (224)
T 3h2s_A 188 TTGNMALAILDQLEHPTAI-RDRIVVRDADLEHHH 221 (224)
T ss_dssp CHHHHHHHHHHHHHSCCCT-TSEEEEEECC-----
T ss_pred eHHHHHHHHHHHhcCcccc-CCEEEEecCcchhcc
Confidence 9999999999999987653 489999988766554
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=240.29 Aligned_cols=271 Identities=17% Similarity=0.101 Sum_probs=193.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC-CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
|+||||||||+||++++++|+++| ++|++++|+..+.. .+.+.. .+++++.+|++|++++.+++ .++|+|
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~--~~~l~~-----~~~~~~~~D~~d~~~l~~~~--~~~d~v 76 (299)
T 2wm3_A 6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKA--AKELRL-----QGAEVVQGDQDDQVIMELAL--NGAYAT 76 (299)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHH--HHHHHH-----TTCEEEECCTTCHHHHHHHH--TTCSEE
T ss_pred CEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHH--HHHHHH-----CCCEEEEecCCCHHHHHHHH--hcCCEE
Confidence 789999999999999999999999 99999998654321 122221 46889999999999999999 679999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAED 229 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 229 (413)
||||+.... ...+.|+.+++++++++++.++++||++||..+|+.... .+..+|+.+|.++|.
T Consensus 77 i~~a~~~~~--------~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~~---------~~~~~y~~sK~~~e~ 139 (299)
T 2wm3_A 77 FIVTNYWES--------CSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTAG---------RLAAAHFDGKGEVEE 139 (299)
T ss_dssp EECCCHHHH--------TCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTTT---------SCCCHHHHHHHHHHH
T ss_pred EEeCCCCcc--------ccchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCCC---------cccCchhhHHHHHHH
Confidence 999985321 023567889999999999999999999888777753221 134689999999999
Q ss_pred HHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccH
Q 015080 230 IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 230 ~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
+++. .|+++++|||+.+||+... .+.+. ....+.. .. +..+.++..++|+|+
T Consensus 140 ~~~~----~gi~~~ilrp~~~~~~~~~---------------~~~~~---~~~~g~~-~~-----~~~~~~~~~~~~i~~ 191 (299)
T 2wm3_A 140 YFRD----IGVPMTSVRLPCYFENLLS---------------HFLPQ---KAPDGKS-YL-----LSLPTGDVPMDGMSV 191 (299)
T ss_dssp HHHH----HTCCEEEEECCEEGGGGGT---------------TTCCE---ECTTSSS-EE-----ECCCCTTSCEEEECG
T ss_pred HHHH----CCCCEEEEeecHHhhhchh---------------hcCCc---ccCCCCE-EE-----EEecCCCCccceecH
Confidence 9876 5899999999999996421 00000 0111111 11 112246678899999
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCC----CCcc------------cccc
Q 015080 310 NDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRP----GDYA------------EVYS 373 (413)
Q Consensus 310 ~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----~~~~------------~~~~ 373 (413)
+|+|++++.++..+....+++|++++ +.+|+.|+++.+.+.+|++.++...|... +.+. .-..
T Consensus 192 ~Dva~~~~~~l~~~~~~~g~~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 270 (299)
T 2wm3_A 192 SDLGPVVLSLLKMPEKYVGQNIGLST-CRHTAEEYAALLTKHTRKVVHDAKMTPEDYEKLGFPGARDLANMFRFYALRPD 270 (299)
T ss_dssp GGHHHHHHHHHHSHHHHTTCEEECCS-EEECHHHHHHHHHHHHSSCEEECCCCTHHHHTTCSTTHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHcChhhhCCeEEEeee-ccCCHHHHHHHHHHHHCCCceeEecCHHHHHhcCCCcHHHHHHHHHHHHhcCC
Confidence 99999999999864211236999975 68999999999999999987765544211 0000 0011
Q ss_pred CHHHHHHhcCcccccccHHHHHHHH
Q 015080 374 DPTKIRLELNWTAKYTNLQESLEIA 398 (413)
Q Consensus 374 d~~k~~~~lG~~p~~~~~~e~l~~~ 398 (413)
......+.+|..|+ +|+|.+++.
T Consensus 271 ~~~~~~~~~g~~~~--~~~~~~~~~ 293 (299)
T 2wm3_A 271 RDIELTLRLNPKAL--TLDQWLEQH 293 (299)
T ss_dssp CCHHHHHHHCTTCC--CHHHHHHHH
T ss_pred CCHHHHHHhCCCCC--CHHHHHHhC
Confidence 12234456787765 688877664
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-30 Score=229.18 Aligned_cols=218 Identities=12% Similarity=0.114 Sum_probs=144.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++++++|+++|++|++++|+..+ .. .+. .+++++.+|++|+++ +.+ .++|+||
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~---~~----~~~---~~~~~~~~D~~d~~~--~~~--~~~d~vi 66 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGK---IT----QTH---KDINILQKDIFDLTL--SDL--SDQNVVV 66 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHH---HH----HHC---SSSEEEECCGGGCCH--HHH--TTCSEEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchh---hh----hcc---CCCeEEeccccChhh--hhh--cCCCEEE
Confidence 469999999999999999999999999999875322 11 111 478999999999988 566 6899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecC-CCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYG-EPEKMPITEETPQAPINPYGKAKKMAED 229 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~-~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 229 (413)
||||.... ..+.|+.+++++++++++.+++++|++||..++. .....+..|+.+..|.+.|+.+|...|.
T Consensus 67 ~~ag~~~~---------~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~ 137 (221)
T 3ew7_A 67 DAYGISPD---------EAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQ 137 (221)
T ss_dssp ECCCSSTT---------TTTSHHHHHHHHHHHHCSCCSSEEEEECCCC-------------------CCCSCCHHHHHHH
T ss_pred ECCcCCcc---------ccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCccccccCCCCCHHHHHHHHHHHHH
Confidence 99997421 1346899999999999999889999999987654 3333356666777788889999999999
Q ss_pred HHHHHHh-hCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeeccc
Q 015080 230 IILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308 (413)
Q Consensus 230 ~~~~~~~-~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~ 308 (413)
+ ..+.. +.|++++++||+.+|||+... ..+ ...... +.+.+ .+ .++++
T Consensus 138 ~-~~~~~~~~gi~~~ivrp~~v~g~~~~~-----------------~~~---~~~~~~-~~~~~------~~---~~~i~ 186 (221)
T 3ew7_A 138 L-EHLKSHQAEFSWTYISPSAMFEPGERT-----------------GDY---QIGKDH-LLFGS------DG---NSFIS 186 (221)
T ss_dssp H-HHHHTTTTTSCEEEEECSSCCCCC---------------------------------------------------CCC
T ss_pred H-HHHHhhccCccEEEEeCcceecCCCcc-----------------Cce---Eecccc-ceecC------CC---CceEe
Confidence 7 34443 689999999999999984210 000 011111 22222 22 36899
Q ss_pred HHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHH
Q 015080 309 VNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKE 343 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e 343 (413)
++|+|++++.+++++... +++||++++.+.+..|
T Consensus 187 ~~Dva~~~~~~l~~~~~~-g~~~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 187 MEDYAIAVLDEIERPNHL-NEHFTVAGKLEHHHHH 220 (221)
T ss_dssp HHHHHHHHHHHHHSCSCT-TSEEECCC--------
T ss_pred HHHHHHHHHHHHhCcccc-CCEEEECCCCcccccc
Confidence 999999999999987653 4899999888776554
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-29 Score=231.37 Aligned_cols=246 Identities=15% Similarity=0.174 Sum_probs=180.0
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |+||||||+|+||++++++|+++|++|++++|.... ..+...++.. ..++.++.+|++|++++++++++
T Consensus 13 ~l~~-k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~ 87 (278)
T 2bgk_A 13 RLQD-KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDH---GQKVCNNIGS-PDVISFVHCDVTKDEDVRNLVDTTI 87 (278)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhH---HHHHHHHhCC-CCceEEEECCCCCHHHHHHHHHHHH
Confidence 4556 899999999999999999999999999999875322 2222233322 23789999999999999988864
Q ss_pred ---CCCcEEEEcCcccCcc--C----CcCChHHHHHHHHHHHHHHHHHHHH----cCCCEEEEeccceecCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVG--E----STLDPLKYYHNITSNTLVVLESMAR----HGVDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~--~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
.++|+||||||+.... . ..++.+..+++|+.++.++++++.. .+.++||++||..+|....
T Consensus 88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~------ 161 (278)
T 2bgk_A 88 AKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGE------ 161 (278)
T ss_dssp HHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCT------
T ss_pred HHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCC------
Confidence 4899999999976421 1 1233456788999998877776654 4678999999988875322
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
.+...|+.||++.+.+++.++.+ .|++++++|||.++|+....... . .+..........+
T Consensus 162 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-----------~-~~~~~~~~~~~~~- 224 (278)
T 2bgk_A 162 ----GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFG-----------V-DSSRVEELAHQAA- 224 (278)
T ss_dssp ----TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSS-----------C-CHHHHHHHHHHTC-
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcc-----------c-chhHHHHhhhccc-
Confidence 13668999999999999999877 68999999999999986432110 0 0111122111111
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcccHHHHHHHHHHHc
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSVKEFVEACKKAT 352 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~~e~~~~i~~~~ 352 (413)
.....+++++|+|++++.++.... ...+++|++.+|...++.|+++.+.+.+
T Consensus 225 -------------~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e~~~~i~~~~ 277 (278)
T 2bgk_A 225 -------------NLKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYTRTNPAFPTALKHGL 277 (278)
T ss_dssp -------------SSCSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCCTHHHHHSCSCC
T ss_pred -------------ccccccCCHHHHHHHHHHHcCcccccCCCCEEEECCcccccCCccchhhhhhc
Confidence 112358999999999999987532 2345799999999999999999876543
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-30 Score=235.03 Aligned_cols=230 Identities=17% Similarity=0.191 Sum_probs=172.1
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHC--CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
||+||||||+||||++++++|+++ |++|++++|+.. .. ..+ ..++.++.+|++|.+++.+++ .++|
T Consensus 4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~---~~----~~~---~~~~~~~~~D~~d~~~~~~~~--~~~d 71 (253)
T 1xq6_A 4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ---GK----EKI---GGEADVFIGDITDADSINPAF--QGID 71 (253)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHH---HH----HHT---TCCTTEEECCTTSHHHHHHHH--TTCS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCC---ch----hhc---CCCeeEEEecCCCHHHHHHHH--cCCC
Confidence 389999999999999999999999 899999987432 11 111 246789999999999999999 5799
Q ss_pred EEEEcCcccCccC-------------CcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 148 AVMHFAAVAYVGE-------------STLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 148 vvi~~Ag~~~~~~-------------~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
+||||||...... ..+.....+++|+.++.++++++++.++++||++||.+++.. ..+.
T Consensus 72 ~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~~--------~~~~ 143 (253)
T 1xq6_A 72 ALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNP--------DHPL 143 (253)
T ss_dssp EEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCT--------TCGG
T ss_pred EEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCCC--------CCcc
Confidence 9999999753211 112223468899999999999999999999999999876521 1122
Q ss_pred CC--CChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 215 AP--INPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 215 ~~--~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
.+ ...|+.+|+++|.+++. .|++++++||+.+||+..... .+. ..... .+.
T Consensus 144 ~~~~~~~y~~sK~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~-------------~~~-------~~~~~--~~~- 196 (253)
T 1xq6_A 144 NKLGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVR-------------ELL-------VGKDD--ELL- 196 (253)
T ss_dssp GGGGGCCHHHHHHHHHHHHHT----SSSCEEEEEECEEECSCSSSS-------------CEE-------EESTT--GGG-
T ss_pred ccccchhHHHHHHHHHHHHHh----CCCceEEEecceeecCCcchh-------------hhh-------ccCCc--CCc-
Confidence 22 23578899999998865 799999999999999863210 000 00000 000
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCC---cccHHHHHHHHHHHcCCC
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGK---GRSVKEFVEACKKATSAN 355 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~---~~s~~e~~~~i~~~~g~~ 355 (413)
. ...++++++|+|++++.+++.+.. .+++||+++++ ++|+.|+++.+.+.+|++
T Consensus 197 ------~--~~~~~~~~~Dva~~~~~~~~~~~~-~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~~ 253 (253)
T 1xq6_A 197 ------Q--TDTKTVPRADVAEVCIQALLFEEA-KNKAFDLGSKPEGTSTPTKDFKALFSQVTSRF 253 (253)
T ss_dssp ------G--SSCCEEEHHHHHHHHHHHTTCGGG-TTEEEEEEECCTTTSCCCCCHHHHHHTCCCCC
T ss_pred ------C--CCCcEEcHHHHHHHHHHHHcCccc-cCCEEEecCCCcCCCCCHHHHHHHHHHHhCCC
Confidence 1 124689999999999999986543 34799999864 599999999999998863
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-29 Score=228.35 Aligned_cols=230 Identities=13% Similarity=0.127 Sum_probs=170.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+||||++++++|+++|++|++++|+....+...+.+.. .+.++.++.+|++|++++++++++
T Consensus 9 ~~~-~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 84 (255)
T 1fmc_A 9 LDG-KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ---LGGQAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp CTT-CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHH---hCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 446 8999999999999999999999999999998764433333333332 235788999999999999988854
Q ss_pred --CCCcEEEEcCcccCccC---CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE---STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~---~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||...... ..++.+..+++|+.++.++++++ ++.+.++||++||...+.. .
T Consensus 85 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-----------~ 153 (255)
T 1fmc_A 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENK-----------N 153 (255)
T ss_dssp HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCC-----------C
T ss_pred hcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCC-----------C
Confidence 48999999999865432 22334567889999977666655 4567789999999887643 2
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
.+..+|+.||++.|.+++.++.+ .|+++++++||.++++.... ...+.+........+
T Consensus 154 ~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~--------------~~~~~~~~~~~~~~~----- 214 (255)
T 1fmc_A 154 INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS--------------VITPEIEQKMLQHTP----- 214 (255)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT--------------TCCHHHHHHHHHTCS-----
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhh--------------ccChHHHHHHHhcCC-----
Confidence 34678999999999999999877 48999999999999874211 112222233222222
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCcccH
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGRSV 341 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~s~ 341 (413)
...+++++|+|++++.++..... ..+++|++++|...|+
T Consensus 215 -----------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 215 -----------IRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGGVQEL 254 (255)
T ss_dssp -----------SCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCCC
T ss_pred -----------cccCCCHHHHHHHHHHHhCCccccCCCcEEEECCceeccC
Confidence 13578999999999999875432 2457999999887764
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-29 Score=230.08 Aligned_cols=251 Identities=11% Similarity=0.044 Sum_probs=162.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |++|||||+|+||++++++|+++|++|++++|+..+.+++.+.+......+.++.++.+|++|++++++++++
T Consensus 4 ~~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (278)
T 1spx_A 4 FAE-KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 82 (278)
T ss_dssp TTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence 345 8999999999999999999999999999998754333323222211122235789999999999999988864
Q ss_pred --CCCcEEEEcCcccCccC--------CcCChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEecccee-cCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE--------STLDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCAT-YGEPEKMPI 208 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~--------~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~-~~~~~~~~~ 208 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++. +.+ ++||++||... +..
T Consensus 83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~------ 155 (278)
T 1spx_A 83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHA------ 155 (278)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSC------
T ss_pred HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEecccccccC------
Confidence 48999999999764332 223345578899999776665554 446 89999999776 532
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
..+...|+.||++.+.+++.++.+ .|+++++|+||.|.++....... +.+.. ..+.. .........
T Consensus 156 -----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~---~~~~~-~~~~~~~~~ 224 (278)
T 1spx_A 156 -----TPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGM--PEETS---KKFYS-TMATMKECV 224 (278)
T ss_dssp -----CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC-------------------HH-HHHHHHHHC
T ss_pred -----CCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCcccccccc--Cchhh---hhhhH-HHHHHHhcC
Confidence 223678999999999999999876 68999999999999875321000 00000 00000 011111111
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC--CCccEEEecCCCcccHHHHHHHHHHHc
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP--KKVGIYNVGTGKGRSVKEFVEACKKAT 352 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~--~~~~~yni~~~~~~s~~e~~~~i~~~~ 352 (413)
+ ...+++++|+|+++++++..+.. ..+++|++.+|...++.++++.+.+.+
T Consensus 225 p----------------~~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 225 P----------------AGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp T----------------TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGC------------
T ss_pred C----------------CcCCCCHHHHHHHHHHHcCccccCcccCcEEEECCCcccccCcccccHHHHh
Confidence 1 12478999999999998875321 235799999999999999999988754
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=226.82 Aligned_cols=231 Identities=13% Similarity=0.087 Sum_probs=171.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+||||++++++|+++|++|++++|+....+++.+.+.+. +.++.++.+|++|++++++++++
T Consensus 9 ~l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~ 84 (256)
T 3gaf_A 9 HLND-AVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA---GGKAIGLECNVTDEQHREAVIKAAL 84 (256)
T ss_dssp CCTT-CEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHT---TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEECCCCCHHHHHHHHHHHH
Confidence 4567 99999999999999999999999999999987654444444444332 46799999999999999888865
Q ss_pred ---CCCcEEEEcCcccCccC---CcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE---STLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~---~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..++.+..+++|+.++.+++++ +++.+.++||++||...+..
T Consensus 85 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 153 (256)
T 3gaf_A 85 DQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENT----------- 153 (256)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCC-----------
T ss_pred HHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCC-----------
Confidence 58999999999865433 2234455788999996666555 45667789999999877632
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
..+..+|+.||++.+.+++.++.+ .|+++++++||.|.++.... ...+..........
T Consensus 154 ~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~--------------~~~~~~~~~~~~~~----- 214 (256)
T 3gaf_A 154 NVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALAT--------------VLTPEIERAMLKHT----- 214 (256)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHH--------------HCCHHHHHHHHTTC-----
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhh--------------ccCHHHHHHHHhcC-----
Confidence 233678999999999999999988 58999999999998753100 01112222222221
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcccH
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSV 341 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~ 341 (413)
....+.+++|+|+++++++.... ...++++++.+|...++
T Consensus 215 -----------p~~r~~~~~dva~~~~~L~s~~~~~itG~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 215 -----------PLGRLGEAQDIANAALFLCSPAAAWISGQVLTVSGGGVQEL 255 (256)
T ss_dssp -----------TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCC-
T ss_pred -----------CCCCCCCHHHHHHHHHHHcCCcccCccCCEEEECCCccccC
Confidence 22357899999999999987532 23468999998876654
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=222.33 Aligned_cols=225 Identities=15% Similarity=0.110 Sum_probs=167.4
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
++ |++|||||+||||++++++|+++|++|+++++.. .+...+..+++...+.++.++.+|++|.+++++++++
T Consensus 3 ~~-k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 79 (246)
T 3osu_A 3 MT-KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGS--KEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQ 79 (246)
T ss_dssp CS-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC--HHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CC-CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35 8999999999999999999999999999987632 2222222222222346789999999999999988865
Q ss_pred -CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++ ++.+.++||++||...+...
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 148 (246)
T 3osu_A 80 FGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGN----------- 148 (246)
T ss_dssp HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC-----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCC-----------
Confidence 48999999999865433 22334557889999977766665 66677899999997765322
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
.+..+|+.||++.+.+++.++.+ .|+++++++||.|.++... .+.+..........+
T Consensus 149 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~p----- 208 (246)
T 3osu_A 149 PGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTD---------------ALSDELKEQMLTQIP----- 208 (246)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCS---------------CSCHHHHHHHHTTCT-----
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCccc---------------ccCHHHHHHHHhcCC-----
Confidence 23678999999999999999886 6899999999999987532 222333333333222
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
...+.+.+|+|+++++++..... ..+++|++.+|.
T Consensus 209 -----------~~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdgG~ 244 (246)
T 3osu_A 209 -----------LARFGQDTDIANTVAFLASDKAKYITGQTIHVNGGM 244 (246)
T ss_dssp -----------TCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTS
T ss_pred -----------CCCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 23567899999999998875432 345899998774
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-28 Score=222.40 Aligned_cols=223 Identities=13% Similarity=0.045 Sum_probs=168.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+....++..+ ++ +.++.++.+|++|++++++++++
T Consensus 8 ~l~~-k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~---~~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (271)
T 3tzq_B 8 ELEN-KVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAA---SV---GRGAVHHVVDLTNEVSVRALIDFTI 80 (271)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHH---HH---CTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH---Hh---CCCeEEEECCCCCHHHHHHHHHHHH
Confidence 4567 999999999999999999999999999999986554443333 33 35789999999999999988865
Q ss_pred ---CCCcEEEEcCcccCc-c-----CCcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYV-G-----ESTLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~-~-----~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
.++|+||||||+... . ...++.+..+++|+.++.++++++ ++.+.++||++||...+...
T Consensus 81 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------- 153 (271)
T 3tzq_B 81 DTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAY------- 153 (271)
T ss_dssp HHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSBC-------
T ss_pred HHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcCCC-------
Confidence 489999999998633 1 123344568899999977666555 67778899999998776432
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
.+..+|+.||++.+.+++.++.+ +|+++++|+||.|+++.... .+............+
T Consensus 154 ----~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~--------------~~~~~~~~~~~~~~~- 214 (271)
T 3tzq_B 154 ----DMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEV--------------GLPQPIVDIFATHHL- 214 (271)
T ss_dssp ----SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC-----------------CHHHHHHHHTTST-
T ss_pred ----CCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccc--------------cCCHHHHHHHHhcCC-
Confidence 33678999999999999999988 79999999999999985321 111222222222221
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
...+..++|+|+++++++.... ...++++++.+|
T Consensus 215 ---------------~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 249 (271)
T 3tzq_B 215 ---------------AGRIGEPHEIAELVCFLASDRAAFITGQVIAADSG 249 (271)
T ss_dssp ---------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ---------------CCCCcCHHHHHHHHHHHhCcccCCcCCCEEEECCC
Confidence 1246789999999999987543 235689999877
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=236.78 Aligned_cols=239 Identities=13% Similarity=0.090 Sum_probs=178.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEcc-CCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD-LGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~d~~~~~~~~~~~~~dvv 149 (413)
|+|||||||||||++++++|+++|++|++++|+..+. ..+.+.. ..+++++.+| ++|++++.+++ .++|+|
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~--~~~~l~~----~~~v~~v~~D~l~d~~~l~~~~--~~~d~V 77 (352)
T 1xgk_A 6 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL--IAEELQA----IPNVTLFQGPLLNNVPLMDTLF--EGAHLA 77 (352)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH--HHHHHHT----STTEEEEESCCTTCHHHHHHHH--TTCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChh--hHHHHhh----cCCcEEEECCccCCHHHHHHHH--hcCCEE
Confidence 7899999999999999999999999999998865432 1122221 1468899999 99999999999 679999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccce--ecCCCCCCCCCCCCCCCCCChhHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VDTLIYSSTCA--TYGEPEKMPITEETPQAPINPYGKAKKM 226 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~iV~~SS~~--~~~~~~~~~~~e~~~~~~~~~Y~~sK~~ 226 (413)
|||++... .+.|..+ +++++++++.+ +++||++||.+ .|+. .+..+|+.||++
T Consensus 78 i~~a~~~~-----------~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~~------------~~~~~y~~sK~~ 133 (352)
T 1xgk_A 78 FINTTSQA-----------GDEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYGP------------WPAVPMWAPKFT 133 (352)
T ss_dssp EECCCSTT-----------SCHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTSS------------CCCCTTTHHHHH
T ss_pred EEcCCCCC-----------cHHHHHH-HHHHHHHHHcCCccEEEEeCCccccccCC------------CCCccHHHHHHH
Confidence 99997431 1236666 99999999998 99999999975 3321 224679999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeec
Q 015080 227 AEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306 (413)
Q Consensus 227 ~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 306 (413)
+|.+++. .|+++++|||+ +||++...... .++. ......+...+.+.+ ++++.+++
T Consensus 134 ~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~~-----------~~~~--~~~~~~g~~~~~~~~------~~~~~~~~ 189 (352)
T 1xgk_A 134 VENYVRQ----LGLPSTFVYAG-IYNNNFTSLPY-----------PLFQ--MELMPDGTFEWHAPF------DPDIPLPW 189 (352)
T ss_dssp HHHHHHT----SSSCEEEEEEC-EEGGGCBSSSC-----------SSCB--EEECTTSCEEEEESS------CTTSCEEE
T ss_pred HHHHHHH----cCCCEEEEecc-eecCCchhccc-----------cccc--ccccCCCceEEeecc------CCCCceee
Confidence 9999977 58999999987 68986432100 0000 000112221123343 57788899
Q ss_pred ccH-HHHHHHHHHHHHhcCC-CCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCC
Q 015080 307 IDV-NDLVDAHVKALERAQP-KKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPG 366 (413)
Q Consensus 307 i~v-~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~ 366 (413)
+|+ +|+|++++.++.++.. ..+++||+++ +.+|+.|+++.+.+.+|.+.++...|.+..
T Consensus 190 i~v~~Dva~ai~~~l~~~~~~~~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~vp~~~~ 250 (352)
T 1xgk_A 190 LDAEHDVGPALLQIFKDGPQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPKVEI 250 (352)
T ss_dssp ECHHHHHHHHHHHHHHHCHHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSSCCC
T ss_pred EecHHHHHHHHHHHHhCCchhhCCeEEEEec-CCCCHHHHHHHHHHHHCCCCceEECCHHHH
Confidence 999 8999999999986421 1237999984 689999999999999999988887775543
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=220.66 Aligned_cols=231 Identities=16% Similarity=0.087 Sum_probs=169.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |++|||||+++||.++|+.|+++|++|++++|+....+++.+.+++ .+.++.++.+|++|++++++++++
T Consensus 4 sL~g-KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~---~g~~~~~~~~Dvt~~~~v~~~~~~~~ 79 (254)
T 4fn4_A 4 SLKN-KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRG---MGKEVLGVKADVSKKKDVEEFVRRTF 79 (254)
T ss_dssp GGTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4678 9999999999999999999999999999998765444444444443 356899999999999999988866
Q ss_pred ---CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
+++|+||||||+... .. ..++.+..+++|+.+ ++.+++.|++++.++||++||...+-..
T Consensus 80 ~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~-------- 151 (254)
T 4fn4_A 80 ETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGG-------- 151 (254)
T ss_dssp HHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSS--------
T ss_pred HHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCC--------
Confidence 789999999997543 22 223455578899988 6678888888888999999997765322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
....+|+.||++...+++.++.| +||+++.|.||.|-.|....... + -...........+++
T Consensus 152 ---~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~----~--------~~~~~~~~~~~~~~~ 216 (254)
T 4fn4_A 152 ---FAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSK----P--------SELGMRTLTKLMSLS 216 (254)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSS----C--------CHHHHHHHHHHHTTC
T ss_pred ---CCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccC----C--------cHHHHHHHHhcCCCC
Confidence 22678999999999999999988 68999999999998764221110 0 011111111111101
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKG 338 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~ 338 (413)
..+...+|+|+++++++..... -.++++.+.+|.+
T Consensus 217 ---------------~R~g~pediA~~v~fLaSd~a~~iTG~~i~VDGG~t 252 (254)
T 4fn4_A 217 ---------------SRLAEPEDIANVIVFLASDEASFVNGDAVVVDGGLT 252 (254)
T ss_dssp ---------------CCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ---------------CCCcCHHHHHHHHHHHhCchhcCCcCCEEEeCCCcc
Confidence 1356789999999998874432 3568999977643
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=226.26 Aligned_cols=242 Identities=13% Similarity=0.108 Sum_probs=166.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+||||++++++|+++|++|++++|+....+++.+.+.... +.++.++.+|++|++++++++++
T Consensus 4 ~l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (263)
T 3ai3_A 4 GISG-KVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF--GVRVLEVAVDVATPEGVDAVVESVR 80 (263)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--CCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 3456 899999999999999999999999999999875433333333332211 24688999999999999988864
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHH----HHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLE----SMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++ .+++.+.++||++||..++...
T Consensus 81 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 151 (263)
T 3ai3_A 81 SSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPL--------- 151 (263)
T ss_dssp HHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCC---------
Confidence 48999999999865432 223345578899999665554 4556677899999998877532
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
.+..+|+.||++.+.+++.++.+ +|+++++|+||.|++|........... ..+...+..........
T Consensus 152 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---- 221 (263)
T 3ai3_A 152 --WYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTK----DNGGDWKGYLQSVADEH---- 221 (263)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTT----TTTCCHHHHHHHHHHHH----
T ss_pred --CCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhc----ccCCcHHHHHHHHHhcC----
Confidence 23678999999999999999887 699999999999998631100000000 00000001111111100
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCccc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGRS 340 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~s 340 (413)
.....+++++|+|+++++++..... ..+++|++.+|...+
T Consensus 222 -----------~p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~vdgG~~~s 262 (263)
T 3ai3_A 222 -----------APIKRFASPEELANFFVFLCSERATYSVGSAYFVDGGMLKT 262 (263)
T ss_dssp -----------CTTCSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTCCCC
T ss_pred -----------CCCCCCcCHHHHHHHHHHHcCccccCCCCcEEEECCCcccc
Confidence 1123578999999999999875432 245799998887654
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-30 Score=227.45 Aligned_cols=204 Identities=16% Similarity=0.110 Sum_probs=161.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+||||||||+||++++++|+++|+ +|++++|+.... ..+++++.+|++|++++.+++ +|+
T Consensus 6 ~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~-------------~~~~~~~~~D~~~~~~~~~~~----~d~ 68 (215)
T 2a35_A 6 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE-------------HPRLDNPVGPLAELLPQLDGS----IDT 68 (215)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC-------------CTTEECCBSCHHHHGGGCCSC----CSE
T ss_pred ceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCccc-------------CCCceEEeccccCHHHHHHhh----hcE
Confidence 7899999999999999999999998 999998865431 246888899999998877665 899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
||||||.... ...+.+..+++|+.++.++++++++.++++||++||..+|+. +.++|+.+|.++|
T Consensus 69 vi~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~-------------~~~~y~~sK~~~e 133 (215)
T 2a35_A 69 AFCCLGTTIK--EAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK-------------SSIFYNRVKGELE 133 (215)
T ss_dssp EEECCCCCHH--HHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT-------------CSSHHHHHHHHHH
T ss_pred EEECeeeccc--cCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCCC-------------CccHHHHHHHHHH
Confidence 9999997532 235677889999999999999999999999999999888752 3568999999999
Q ss_pred HHHHHHHhhCCCc-EEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecc
Q 015080 229 DIILDFSKNSDMA-VMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307 (413)
Q Consensus 229 ~~~~~~~~~~gi~-~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i 307 (413)
.+++. .|++ ++++||+.+|||.... .+...+ .... .++ + + ..++++
T Consensus 134 ~~~~~----~~~~~~~~vrp~~v~g~~~~~--------------~~~~~~----~~~~--~~~-~------~--~~~~~i 180 (215)
T 2a35_A 134 QALQE----QGWPQLTIARPSLLFGPREEF--------------RLAEIL----AAPI--ARI-L------P--GKYHGI 180 (215)
T ss_dssp HHHTT----SCCSEEEEEECCSEESTTSCE--------------EGGGGT----TCCC--C-------------CHHHHH
T ss_pred HHHHH----cCCCeEEEEeCceeeCCCCcc--------------hHHHHH----HHhh--hhc-c------C--CCcCcE
Confidence 99876 6899 9999999999986421 122111 1111 111 1 2 257899
Q ss_pred cHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHH
Q 015080 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVK 342 (413)
Q Consensus 308 ~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~ 342 (413)
|++|+|++++.+++++. +++||+++++.+++.
T Consensus 181 ~~~Dva~~~~~~~~~~~---~~~~~i~~~~~~~~~ 212 (215)
T 2a35_A 181 EACDLARALWRLALEEG---KGVRFVESDELRKLG 212 (215)
T ss_dssp HHHHHHHHHHHHHTCCC---SEEEEEEHHHHHHHH
T ss_pred eHHHHHHHHHHHHhcCC---CCceEEcHHHHHHhh
Confidence 99999999999998765 379999987766553
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=225.72 Aligned_cols=246 Identities=13% Similarity=0.105 Sum_probs=171.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC---------CchhhhhhhhhcCCCCceEEEEccCCCHHH
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG---------NIGAVKVLQELFPEPGRLQFIYADLGDAKA 136 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 136 (413)
++.+ |++|||||+|+||++++++|+++|++|++++|+... .+...+....+...+.++.++.+|++|+++
T Consensus 7 ~l~~-k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 85 (281)
T 3s55_A 7 DFEG-KTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAA 85 (281)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred ccCC-CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 3556 999999999999999999999999999999986432 222333333332334679999999999999
Q ss_pred HHHHhhc-----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCC
Q 015080 137 VNKFFSE-----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEP 203 (413)
Q Consensus 137 ~~~~~~~-----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~ 203 (413)
+++++++ .++|+||||||+..... ..++.+..+++|+.++.+++++ |++.+.++||++||...+...
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 165 (281)
T 3s55_A 86 LESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSAN 165 (281)
T ss_dssp HHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcCCC
Confidence 9988865 48999999999865433 2233455788999997666655 566677899999998776432
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCC-CCCcccccccchHHHHHH
Q 015080 204 EKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGE-APRPELREHGRISGACFD 279 (413)
Q Consensus 204 ~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 279 (413)
.+...|+.||++.+.+++.++.+ +|+++++|+||.|++|........ ...+.. ..........
T Consensus 166 -----------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~--~~~~~~~~~~ 232 (281)
T 3s55_A 166 -----------FAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDL--EKPTLKDVES 232 (281)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC---------CCHHHHHH
T ss_pred -----------CCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccc--cccchhHHHH
Confidence 23678999999999999999987 589999999999999863210000 000000 0000000000
Q ss_pred HHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCccc
Q 015080 280 AARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGRS 340 (413)
Q Consensus 280 ~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~s 340 (413)
.... .......+.+++|+|+++++++..... ..++++++.+|...+
T Consensus 233 ~~~~---------------~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~~~~ 279 (281)
T 3s55_A 233 VFAS---------------LHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATAR 279 (281)
T ss_dssp HHHH---------------HCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGG
T ss_pred HHHh---------------hhccCcCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCcccC
Confidence 0000 011225789999999999999985432 345899998887654
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-28 Score=220.23 Aligned_cols=227 Identities=13% Similarity=0.047 Sum_probs=170.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |++|||||+|+||++++++|+++|++|++++|+....++..+.+++. +.++.++.+|++|++++++++++
T Consensus 3 l~~-k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (247)
T 3lyl_A 3 LNE-KVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK---GFKARGLVLNISDIESIQNFFAEIKA 78 (247)
T ss_dssp TTT-CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT---TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 446 89999999999999999999999999999988654444444444332 46799999999999999988865
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..++.+..+++|+.++.+++++ +.+.+.++||++||...+...
T Consensus 79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 148 (247)
T 3lyl_A 79 ENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGN---------- 148 (247)
T ss_dssp TTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC----------
T ss_pred HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCC----------
Confidence 47999999999865433 2334456788999997665555 455667899999998766432
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+...|+.||++.+.+++.++.+ .|+++++++||.|.++... .+.+..........
T Consensus 149 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~----- 207 (247)
T 3lyl_A 149 -PGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTD---------------KLTDEQKSFIATKI----- 207 (247)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTT---------------TSCHHHHHHHHTTS-----
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccch---------------hccHHHHHHHhhcC-----
Confidence 23678999999999999999887 6899999999999987532 12222222222221
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
....+.+++|+|+++++++.... ...+++|++.+|..+
T Consensus 208 -----------~~~~~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG~~~ 246 (247)
T 3lyl_A 208 -----------PSGQIGEPKDIAAAVAFLASEEAKYITGQTLHVNGGMYM 246 (247)
T ss_dssp -----------TTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSSC
T ss_pred -----------CCCCCcCHHHHHHHHHHHhCCCcCCccCCEEEECCCEec
Confidence 22467899999999999987543 234689999887654
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-28 Score=220.77 Aligned_cols=225 Identities=10% Similarity=0.025 Sum_probs=160.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+....++..+.+ +.++.++.+|++|++++++++++
T Consensus 4 ~l~~-k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~~ 76 (257)
T 3tpc_A 4 QLKS-RVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL------GAAVRFRNADVTNEADATAALAFAK 76 (257)
T ss_dssp CCTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------------CEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh------CCceEEEEccCCCHHHHHHHHHHHH
Confidence 3556 99999999999999999999999999999998766554443332 35789999999999999988865
Q ss_pred ---CCCcEEEEcCcccCccC--------CcCChHHHHHHHHHHHHHHHHHHHHc----------CCCEEEEeccceecCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE--------STLDPLKYYHNITSNTLVVLESMARH----------GVDTLIYSSTCATYGE 202 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~--------~~~~~~~~~~~n~~~~~~ll~~~~~~----------~~~~iV~~SS~~~~~~ 202 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++... +.++||++||...+..
T Consensus 77 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~ 156 (257)
T 3tpc_A 77 QEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDG 156 (257)
T ss_dssp HHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC
T ss_pred HHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccC
Confidence 48999999999864322 22345567899999987777766542 4679999999887643
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHH
Q 015080 203 PEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFD 279 (413)
Q Consensus 203 ~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (413)
.. +..+|+.||++.+.+++.++.+ +|+++++++||.|.++... .+.+....
T Consensus 157 ~~-----------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~---------------~~~~~~~~ 210 (257)
T 3tpc_A 157 QI-----------GQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMA---------------GMPQDVQD 210 (257)
T ss_dssp CT-----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC--------------------------
T ss_pred CC-----------CCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhc---------------cCCHHHHH
Confidence 22 3678999999999999999888 7899999999999987522 11111111
Q ss_pred HHhccccceeEecccccCCCCcee-eecccHHHHHHHHHHHHHhcCCCCccEEEecCCCccc
Q 015080 280 AARGIIAGLKVKGTDYSTADGTCV-RDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRS 340 (413)
Q Consensus 280 ~~~~~~~~i~~~g~~~~~~~~~~~-~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s 340 (413)
..... ... ..+.+++|+|+++++++.. ....++++++.+|..++
T Consensus 211 ~~~~~----------------~p~~~r~~~~~dva~~v~~l~s~-~~itG~~i~vdGG~~~~ 255 (257)
T 3tpc_A 211 ALAAS----------------VPFPPRLGRAEEYAALVKHICEN-TMLNGEVIRLDGALRMA 255 (257)
T ss_dssp ---CC----------------SSSSCSCBCHHHHHHHHHHHHHC-TTCCSCEEEESTTCCC-
T ss_pred HHHhc----------------CCCCCCCCCHHHHHHHHHHHccc-CCcCCcEEEECCCccCC
Confidence 11111 111 3578999999999999975 33456899998886553
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-28 Score=223.97 Aligned_cols=243 Identities=14% Similarity=0.075 Sum_probs=171.2
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC---------CCchhhhhhhhhcCCCCceEEEEccCCCHHH
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR---------GNIGAVKVLQELFPEPGRLQFIYADLGDAKA 136 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~---------~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 136 (413)
.+.+ |++|||||+|+||.+++++|+++|++|++++|+.. ..+...+....+...+.++.++.+|++|+++
T Consensus 10 ~l~g-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 88 (278)
T 3sx2_A 10 PLTG-KVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRES 88 (278)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHH
T ss_pred CCCC-CEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 4567 99999999999999999999999999999998632 1222333222222224689999999999999
Q ss_pred HHHHhhc-----CCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHH----HHHcC-CCEEEEeccceecCCCCCC
Q 015080 137 VNKFFSE-----NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLES----MARHG-VDTLIYSSTCATYGEPEKM 206 (413)
Q Consensus 137 ~~~~~~~-----~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~----~~~~~-~~~iV~~SS~~~~~~~~~~ 206 (413)
+++++++ .++|+||||||+.......++.+..+++|+.++.+++++ +++.+ .++||++||...+....
T Consensus 89 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-- 166 (278)
T 3sx2_A 89 LSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVG-- 166 (278)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCC--
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCc--
Confidence 9988865 489999999998765444455677899999997666655 44544 67999999987653221
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHH-HHh
Q 015080 207 PITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFD-AAR 282 (413)
Q Consensus 207 ~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 282 (413)
.+..+..+|+.||++.+.+++.++.+ .|+++++|+||.|.++.... ........ ...
T Consensus 167 -----~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~--------------~~~~~~~~~~~~ 227 (278)
T 3sx2_A 167 -----SADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINN--------------EFTREWLAKMAA 227 (278)
T ss_dssp -----CSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSS--------------HHHHHHHHHHHH
T ss_pred -----cCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchh--------------hhHHHHHhhccc
Confidence 12233567999999999999999887 57999999999999875321 11111111 111
Q ss_pred ccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 283 GIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 283 ~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
.... ....+ .... ..+++++|+|+++++++.... ...++++++.+|..
T Consensus 228 ~~~~-~~~~~------~~~p-~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~~ 276 (278)
T 3sx2_A 228 ATDT-PGAMG------NAMP-VEVLAPEDVANAVAWLVSDQARYITGVTLPVDAGFL 276 (278)
T ss_dssp HCC---CTTS------CSSS-CSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTT
T ss_pred hhhh-hhhhh------hhcC-cCcCCHHHHHHHHHHHhCcccccccCCEEeECCCcc
Confidence 1110 11111 2222 578999999999999987542 23458999987753
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=219.36 Aligned_cols=217 Identities=13% Similarity=0.109 Sum_probs=164.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |+||||||+||||++++++|+++|++|++++|+..... ...+.++.+|++|++++++++++
T Consensus 26 ~~~-k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~~Dv~d~~~v~~~~~~~~~ 92 (260)
T 3un1_A 26 NQQ-KVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA------------DPDIHTVAGDISKPETADRIVREGIE 92 (260)
T ss_dssp TTC-CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS------------STTEEEEESCTTSHHHHHHHHHHHHH
T ss_pred cCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc------------cCceEEEEccCCCHHHHHHHHHHHHH
Confidence 345 89999999999999999999999999999998654432 24688999999999999988865
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++ ++.+.++||++||..++... +
T Consensus 93 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~---------~ 163 (260)
T 3un1_A 93 RFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPM---------V 163 (260)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCB---------T
T ss_pred HCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCC---------C
Confidence 48999999999865433 22344567889999977666554 66778899999997765321 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhC---CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKNS---DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
..+...|+.||++.+.+++.++.+. |+++++|+||.|++|.... .. ........
T Consensus 164 ~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~--------------~~----~~~~~~~~----- 220 (260)
T 3un1_A 164 GMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPA--------------ET----HSTLAGLH----- 220 (260)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCG--------------GG----HHHHHTTS-----
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCH--------------HH----HHHHhccC-----
Confidence 2346789999999999999999885 8999999999999985321 11 11122211
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCccc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRS 340 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s 340 (413)
....+.+++|+|++++++.. .....+++|++.+|...+
T Consensus 221 -----------p~~r~~~~~dva~av~~L~~-~~~itG~~i~vdGG~~~~ 258 (260)
T 3un1_A 221 -----------PVGRMGEIRDVVDAVLYLEH-AGFITGEILHVDGGQNAG 258 (260)
T ss_dssp -----------TTSSCBCHHHHHHHHHHHHH-CTTCCSCEEEESTTGGGC
T ss_pred -----------CCCCCcCHHHHHHHHHHhcc-cCCCCCcEEEECCCeecc
Confidence 22357889999999999944 333356899998886543
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=230.19 Aligned_cols=247 Identities=14% Similarity=0.090 Sum_probs=177.7
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |+||||||+||||++++++|+++|++|++++|+....++..+.+.+.. +.++.++.+|++|.++++++++.
T Consensus 23 ~l~~-k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~ 99 (302)
T 1w6u_A 23 SFQG-KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT--GNKVHAIQCDVRDPDMVQNTVSELI 99 (302)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc--CCceEEEEeCCCCHHHHHHHHHHHH
Confidence 4556 899999999999999999999999999999876543333333333221 25689999999999999888765
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHH-----cCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMAR-----HGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~-----~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++.+ .+.++||++||.+++...
T Consensus 100 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~-------- 171 (302)
T 1w6u_A 100 KVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGS-------- 171 (302)
T ss_dssp HHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCC--------
T ss_pred HHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCC--------
Confidence 47899999999754322 2334556889999998777665542 345799999998776432
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
.+..+|+.||++.+.+++.++.+ .|++++++|||.++++....... + .. ..........+
T Consensus 172 ---~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~--~--------~~--~~~~~~~~~~p-- 234 (302)
T 1w6u_A 172 ---GFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLD--P--------TG--TFEKEMIGRIP-- 234 (302)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CC--T--------TS--HHHHHHHTTCT--
T ss_pred ---CCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcc--c--------ch--hhHHHHHhcCC--
Confidence 33678999999999999999888 79999999999999874211100 0 00 01112222111
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCcccHHHHHHHHHHHcCC
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGRSVKEFVEACKKATSA 354 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~~g~ 354 (413)
...+++++|+|++++.++..... ..+++|++.+|..+++.++++.+.+..|.
T Consensus 235 --------------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~~~~~~~~~g~ 287 (302)
T 1w6u_A 235 --------------CGRLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEVLISGEFNDLRKVTKE 287 (302)
T ss_dssp --------------TSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHHHHHHSTTGGGGGCCHH
T ss_pred --------------cCCCCCHHHHHHHHHHHcCCcccccCCCEEEECCCeeeccCCccccchhhccc
Confidence 12478999999999999875432 24579999999888888888877766654
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=225.15 Aligned_cols=229 Identities=12% Similarity=0.029 Sum_probs=169.2
Q ss_pred CCCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 65 QHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 65 ~~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
..+.+ |++|||||+|+||++++++|+++|++|++++|+....+++.+.+.+. +.++.++.+|++|.+++++++++
T Consensus 24 ~~l~~-k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~ 99 (270)
T 3ftp_A 24 KTLDK-QVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA---GLEGRGAVLNVNDATAVDALVEST 99 (270)
T ss_dssp CTTTT-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---TCCCEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEEeCCCHHHHHHHHHHH
Confidence 34567 99999999999999999999999999999987654444444444433 45788999999999999988865
Q ss_pred ----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++ ++.+.++||++||...+...
T Consensus 100 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 171 (270)
T 3ftp_A 100 LKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGN-------- 171 (270)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC--------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCC--------
Confidence 48999999999865433 22344557889999976665554 55667899999997766332
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.|.++... .+............
T Consensus 172 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~---------------~~~~~~~~~~~~~~--- 230 (270)
T 3ftp_A 172 ---PGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTK---------------GLPQEQQTALKTQI--- 230 (270)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHH---------------HSCHHHHHHHHTTC---
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchh---------------hcCHHHHHHHHhcC---
Confidence 23678999999999999999888 6899999999999875311 11111222222211
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
....+.+++|+|+++++++.... ...++++++.+|..+
T Consensus 231 -------------p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 269 (270)
T 3ftp_A 231 -------------PLGRLGSPEDIAHAVAFLASPQAGYITGTTLHVNGGMFM 269 (270)
T ss_dssp -------------TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSSC
T ss_pred -------------CCCCCCCHHHHHHHHHHHhCCCcCCccCcEEEECCCccc
Confidence 22357899999999999886432 234589999887654
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=222.70 Aligned_cols=225 Identities=16% Similarity=0.149 Sum_probs=164.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-CC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-NA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~ 145 (413)
+.+ |+||||||+||||++++++|+++|++|++++|+.. ...+..++. .+++++.+|++|++++++++++ .+
T Consensus 5 ~~~-~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~---~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (244)
T 1cyd_A 5 FSG-LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS---DLVSLAKEC----PGIEPVCVDLGDWDATEKALGGIGP 76 (244)
T ss_dssp CTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHHS----TTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHHhc----cCCCcEEecCCCHHHHHHHHHHcCC
Confidence 445 89999999999999999999999999999987532 222222222 3567789999999999999865 36
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHH----HcC-CCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMA----RHG-VDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
+|+||||||+..... ..++.+..+++|+.++.++++++. +.+ .++||++||..++... .+
T Consensus 77 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------~~ 145 (244)
T 1cyd_A 77 VDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF-----------PN 145 (244)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC-----------TT
T ss_pred CCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCC-----------CC
Confidence 899999999764332 223345678899999776666554 445 6899999998877532 23
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
..+|+.||++.|.+++.++.+ .|++++++|||.++|+..... ...+.+...+....+
T Consensus 146 ~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~-------------~~~~~~~~~~~~~~~------- 205 (244)
T 1cyd_A 146 LITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKV-------------SADPEFARKLKERHP------- 205 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHH-------------TCCHHHHHHHHHHST-------
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcccccc-------------ccCHHHHHHHHhcCC-------
Confidence 678999999999999999887 689999999999998741100 001122222222111
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
.+++++++|+|++++.++.... ...++.+++.+|...
T Consensus 206 ---------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~~ 243 (244)
T 1cyd_A 206 ---------LRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAGYLA 243 (244)
T ss_dssp ---------TSSCBCHHHHHHHHHHHHSGGGTTCCSSEEEESTTGGG
T ss_pred ---------ccCCCCHHHHHHHHHHHhCchhhcccCCEEEECCCccC
Confidence 2478999999999999997543 234578999877543
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-28 Score=221.51 Aligned_cols=234 Identities=18% Similarity=0.132 Sum_probs=167.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+||||++++++|+++|++|++++|+.. ...+...++ +..+.++.+|++|++++++++++
T Consensus 6 l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~---~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~ 78 (259)
T 4e6p_A 6 LEG-KSALITGSARGIGRAFAEAYVREGATVAIADIDIE---RARQAAAEI---GPAAYAVQMDVTRQDSIDAAIAATVE 78 (259)
T ss_dssp TTT-CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHHHh---CCCceEEEeeCCCHHHHHHHHHHHHH
Confidence 456 89999999999999999999999999999987533 333333333 35689999999999999988865
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHH----HcC-CCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMA----RHG-VDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++. +.+ .++||++||...+...
T Consensus 79 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 149 (259)
T 4e6p_A 79 HAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGE--------- 149 (259)
T ss_dssp HSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC---------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCC---------
Confidence 48999999999865433 223445578899999777666554 443 5799999998776432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc--c
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA--G 287 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 287 (413)
.+..+|+.||++.+.+++.++.+ .|+++++|+||.|++|... . ............. .
T Consensus 150 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~---------------~-~~~~~~~~~~~~~~~~ 211 (259)
T 4e6p_A 150 --ALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWD---------------G-VDALFARYENRPRGEK 211 (259)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHH---------------H-HHHHHHHHHTCCTTHH
T ss_pred --CCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhh---------------h-hhhhhhhhccCChHHH
Confidence 23678999999999999999887 4899999999999997421 1 1111111111000 0
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCccc
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRS 340 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s 340 (413)
....+ +......+.+++|+|+++++++.... ...+++|++.+|..+|
T Consensus 212 ~~~~~------~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdgG~~~s 259 (259)
T 4e6p_A 212 KRLVG------EAVPFGRMGTAEDLTGMAIFLASAESDYIVSQTYNVDGGNWMS 259 (259)
T ss_dssp HHHHH------HHSTTSSCBCTHHHHHHHHHTTSGGGTTCCSCEEEESTTSSCC
T ss_pred HHHHh------ccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECcChhcC
Confidence 00011 12234578999999999999887433 2345899998887653
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=223.55 Aligned_cols=227 Identities=18% Similarity=0.164 Sum_probs=144.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |+||||||+|+||++++++|+++|++|++++|+....+++.+.+.+ .+..+.++.+|++|++++++++++
T Consensus 6 ~~~~-k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T 3qiv_A 6 RFEN-KVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVA---DGGTAISVAVDVSDPESAKAMADRTL 81 (253)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred ccCC-CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4556 9999999999999999999999999999998765444444444433 246789999999999999988865
Q ss_pred ---CCCcEEEEcCcccC---cc----CCcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAY---VG----ESTLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~---~~----~~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|+||||||+.. .. ...++.+..+++|+.+ ++.+++.+++.+.++||++||...|.
T Consensus 82 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------- 153 (253)
T 3qiv_A 82 AEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL-------- 153 (253)
T ss_dssp HHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-------------
T ss_pred HHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC--------
Confidence 48999999999842 11 1223345678999999 66777777777788999999988762
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
+...|+.||++.+.+++.++.+ .|+++++++||.|+++.... .........+..
T Consensus 154 ------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--------------~~~~~~~~~~~~--- 210 (253)
T 3qiv_A 154 ------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRT--------------TTPKEMVDDIVK--- 210 (253)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC---------------------------------------
T ss_pred ------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhh--------------cCcHHHHHHHhc---
Confidence 2457999999999999999988 48999999999999875321 001111111111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCccc
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGRS 340 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~s 340 (413)
......+.+++|+|+++++++..... ..+++|++.+|..++
T Consensus 211 -------------~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG~~~~ 252 (253)
T 3qiv_A 211 -------------GLPLSRMGTPDDLVGMCLFLLSDEASWITGQIFNVDGGQIIR 252 (253)
T ss_dssp ----------------------CCHHHHHHHHHHSGGGTTCCSCEEEC-------
T ss_pred -------------cCCCCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCCeecC
Confidence 11223466789999999999875432 245899998886543
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=221.35 Aligned_cols=206 Identities=13% Similarity=0.067 Sum_probs=158.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+||||||+||||++++++|+++|+ +|++++|+..+..... ..++.++.+|++|++++.+++ .++|+
T Consensus 19 ~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~--~~~d~ 87 (242)
T 2bka_A 19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA---------YKNVNQEVVDFEKLDDYASAF--QGHDV 87 (242)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG---------GGGCEEEECCGGGGGGGGGGG--SSCSE
T ss_pred CeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc---------cCCceEEecCcCCHHHHHHHh--cCCCE
Confidence 7999999999999999999999999 9999998765443221 136788999999999999998 58999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
||||||..... ...+..+++|+.++.++++++++.+.++||++||.++|+. +..+|+.+|+++|
T Consensus 88 vi~~ag~~~~~---~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~-------------~~~~Y~~sK~~~e 151 (242)
T 2bka_A 88 GFCCLGTTRGK---AGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS-------------SNFLYLQVKGEVE 151 (242)
T ss_dssp EEECCCCCHHH---HHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT-------------CSSHHHHHHHHHH
T ss_pred EEECCCccccc---CCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCC-------------CcchHHHHHHHHH
Confidence 99999975322 2356788999999999999999998899999999988752 2468999999999
Q ss_pred HHHHHHHhhCCC-cEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecc
Q 015080 229 DIILDFSKNSDM-AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307 (413)
Q Consensus 229 ~~~~~~~~~~gi-~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i 307 (413)
.+++. .++ ++++||||.+|||.... .....+........+ .......++
T Consensus 152 ~~~~~----~~~~~~~~vrpg~v~~~~~~~--------------~~~~~~~~~~~~~~~------------~~~~~~~~~ 201 (242)
T 2bka_A 152 AKVEE----LKFDRYSVFRPGVLLCDRQES--------------RPGEWLVRKFFGSLP------------DSWASGHSV 201 (242)
T ss_dssp HHHHT----TCCSEEEEEECCEEECTTGGG--------------SHHHHHHHHHHCSCC------------TTGGGGTEE
T ss_pred HHHHh----cCCCCeEEEcCceecCCCCCC--------------cHHHHHHHHhhcccC------------ccccCCccc
Confidence 99876 577 69999999999985321 122233333322222 011123589
Q ss_pred cHHHHHHHHHHHHHhcCCCCccEEEecC
Q 015080 308 DVNDLVDAHVKALERAQPKKVGIYNVGT 335 (413)
Q Consensus 308 ~v~Dva~a~~~~~~~~~~~~~~~yni~~ 335 (413)
+++|+|++++.++..+... +.|++.+
T Consensus 202 ~~~dva~~~~~~~~~~~~~--~~~~~~~ 227 (242)
T 2bka_A 202 PVVTVVRAMLNNVVRPRDK--QMELLEN 227 (242)
T ss_dssp EHHHHHHHHHHHHTSCCCS--SEEEEEH
T ss_pred CHHHHHHHHHHHHhCcccc--CeeEeeH
Confidence 9999999999999876653 4676643
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-28 Score=220.96 Aligned_cols=230 Identities=14% Similarity=0.093 Sum_probs=168.2
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+....++..+.+.+.. ..++.++.+|++|++++++++++
T Consensus 7 ~l~~-k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (262)
T 3pk0_A 7 DLQG-RSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG--SGKVIGVQTDVSDRAQCDALAGRAV 83 (262)
T ss_dssp CCTT-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS--SSCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC--CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 4556 999999999999999999999999999999876544444444443321 15789999999999999988765
Q ss_pred ---CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHH----HHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLE----SMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+...... .++.+..+++|+.++.++++ .|++.+.++||++||..... .
T Consensus 84 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------~ 153 (262)
T 3pk0_A 84 EEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPI----------T 153 (262)
T ss_dssp HHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTT----------B
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcc----------C
Confidence 489999999998654332 23344568899999666554 45555788999999976431 1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
+..+..+|+.||++.+.+++.++.+ +|+++++|+||.|.++... ...+..........+
T Consensus 154 ~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~p--- 215 (262)
T 3pk0_A 154 GYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLL---------------ENGEEYIASMARSIP--- 215 (262)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHH---------------TTCHHHHHHHHTTST---
T ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCcccc---------------ccCHHHHHHHHhcCC---
Confidence 1233678999999999999999988 6999999999999986421 111222233322222
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
...+.+++|+|+++++++.... ...++++++.+|..+
T Consensus 216 -------------~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~~~ 253 (262)
T 3pk0_A 216 -------------AGALGTPEDIGHLAAFLATKEAGYITGQAIAVDGGQVL 253 (262)
T ss_dssp -------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTC
T ss_pred -------------CCCCcCHHHHHHHHHHHhCccccCCcCCEEEECCCeec
Confidence 1246789999999999887542 234589999888654
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=219.62 Aligned_cols=238 Identities=13% Similarity=0.088 Sum_probs=168.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC----------CCchhhhhhhhhcCCCCceEEEEccCCCHH
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR----------GNIGAVKVLQELFPEPGRLQFIYADLGDAK 135 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 135 (413)
.+++ |++|||||+|+||++++++|+++|++|++++|... +.+...+....+...+.++.++.+|++|++
T Consensus 12 ~l~g-k~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 90 (280)
T 3pgx_A 12 SLQG-RVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDA 90 (280)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred ccCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 3556 99999999999999999999999999999998421 233333333334344568999999999999
Q ss_pred HHHHHhhc-----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHH----HHHcC-CCEEEEeccceecC
Q 015080 136 AVNKFFSE-----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLES----MARHG-VDTLIYSSTCATYG 201 (413)
Q Consensus 136 ~~~~~~~~-----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~-~~~iV~~SS~~~~~ 201 (413)
++++++++ .++|+||||||+..... ..++.+..+++|+.++.+++++ +++.+ .++||++||...+.
T Consensus 91 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 170 (280)
T 3pgx_A 91 ALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK 170 (280)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhcc
Confidence 99988865 58999999999875443 2233455788999996665555 45554 67999999987764
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHH
Q 015080 202 EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACF 278 (413)
Q Consensus 202 ~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (413)
.. .+...|+.||++.+.+++.++.+ +|+++++|+||.|.++.... .......
T Consensus 171 ~~-----------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~--------------~~~~~~~ 225 (280)
T 3pgx_A 171 AT-----------PGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEP--------------EAMMEIF 225 (280)
T ss_dssp CC-----------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCH--------------HHHHHHH
T ss_pred CC-----------CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccch--------------hhhhhhh
Confidence 32 23678999999999999999988 78999999999999975321 1111111
Q ss_pred HHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 279 DAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 279 ~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
.........+... ..... .+++++|+|+++++++..... ..++++++.+|.
T Consensus 226 ~~~~~~~~~~~~~-------~~~~~-r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 277 (280)
T 3pgx_A 226 ARHPSFVHSFPPM-------PVQPN-GFMTADEVADVVAWLAGDGSGTLTGTQIPVDKGA 277 (280)
T ss_dssp HHCGGGGGGSCCB-------TTBCS-SCBCHHHHHHHHHHHHSGGGTTCSSCEEEESTTG
T ss_pred hcCchhhhhhhhc-------ccCCC-CCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 1100000101110 11122 489999999999999875432 345899997764
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=230.33 Aligned_cols=243 Identities=17% Similarity=0.195 Sum_probs=176.2
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCC-chhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN-IGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
||+||||||||+||++++++|++.|++|++++|+.... .+..+.+..+. ..+++++.+|++|++++.+++ .++|+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~l~~~~--~~~d~ 79 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK--QLGAKLIEASLDDHQRLVDAL--KQVDV 79 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH--TTTCEEECCCSSCHHHHHHHH--TTCSE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHH--hCCeEEEeCCCCCHHHHHHHH--hCCCE
Confidence 37899999999999999999999999999998865432 11222222221 247899999999999999999 68999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccceecCCCCCCCCCCCCCCCC-CChhHHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VDTLIYSSTCATYGEPEKMPITEETPQAP-INPYGKAKKM 226 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~~-~~~Y~~sK~~ 226 (413)
|||+|+..... .|+.++.++++++++.+ +++||+ | +||...... +.+..| ...| .+|.+
T Consensus 80 vi~~a~~~~~~-----------~~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~~~~---~~~~~p~~~~y-~sK~~ 140 (313)
T 1qyd_A 80 VISALAGGVLS-----------HHILEQLKLVEAIKEAGNIKRFLP-S---EFGMDPDIM---EHALQPGSITF-IDKRK 140 (313)
T ss_dssp EEECCCCSSSS-----------TTTTTHHHHHHHHHHSCCCSEEEC-S---CCSSCTTSC---CCCCSSTTHHH-HHHHH
T ss_pred EEECCccccch-----------hhHHHHHHHHHHHHhcCCCceEEe-c---CCcCCcccc---ccCCCCCcchH-HHHHH
Confidence 99999975321 26777899999999998 999985 3 354322111 223233 4568 99999
Q ss_pred HHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeec
Q 015080 227 AEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306 (413)
Q Consensus 227 ~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 306 (413)
+|.++++ .|++++++||+.++|+.... +............. +.+.+ +++..+++
T Consensus 141 ~e~~~~~----~g~~~~ilrp~~~~~~~~~~---------------~~~~~~~~~~~~~~-~~~~~------~g~~~~~~ 194 (313)
T 1qyd_A 141 VRRAIEA----ASIPYTYVSSNMFAGYFAGS---------------LAQLDGHMMPPRDK-VLIYG------DGNVKGIW 194 (313)
T ss_dssp HHHHHHH----TTCCBCEEECCEEHHHHTTT---------------SSCTTCCSSCCSSE-ECCBT------TSCSEEEE
T ss_pred HHHHHHh----cCCCeEEEEeceeccccccc---------------cccccccccCCCCe-EEEeC------CCCceEEE
Confidence 9998865 78999999999988743110 00000000011111 34444 67788999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCccEEEecCC-CcccHHHHHHHHHHHcCCCceeEecC
Q 015080 307 IDVNDLVDAHVKALERAQPKKVGIYNVGTG-KGRSVKEFVEACKKATSANIKVIYEP 362 (413)
Q Consensus 307 i~v~Dva~a~~~~~~~~~~~~~~~yni~~~-~~~s~~e~~~~i~~~~g~~~~~~~~~ 362 (413)
++++|+|++++.++..+... +++|++.++ +.+|+.|+++.+.+.+|++.++...|
T Consensus 195 i~~~Dva~~~~~~l~~~~~~-~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 250 (313)
T 1qyd_A 195 VDEDDVGTYTIKSIDDPQTL-NKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 250 (313)
T ss_dssp ECHHHHHHHHHHHTTCGGGS-SSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred EEHHHHHHHHHHHHhCcccC-CceEEEeCCCCccCHHHHHHHHHHhcCCCCceEECC
Confidence 99999999999999865432 367888764 78999999999999999988766554
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=225.63 Aligned_cols=227 Identities=12% Similarity=0.006 Sum_probs=164.9
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--CCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--NAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~~~d 147 (413)
||+||||||+||||++++++|+++|++|++++|+..... . .+.+|++|.+++++++++ .++|
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~-------------~---~~~~D~~~~~~~~~~~~~~~~~~d 64 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIE-------------A---DLSTPGGRETAVAAVLDRCGGVLD 64 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEE-------------C---CTTSHHHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHcc-------------c---cccCCcccHHHHHHHHHHcCCCcc
Confidence 689999999999999999999999999999998654321 1 156899999999998864 3899
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc----CCCEEEEeccceecCCCCCCC-C-------CCCC---
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH----GVDTLIYSSTCATYGEPEKMP-I-------TEET--- 212 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~iV~~SS~~~~~~~~~~~-~-------~e~~--- 212 (413)
+||||||+... ....+..+++|+.++.++++++.+. +.++||++||..+|+.....+ . +|+.
T Consensus 65 ~vi~~Ag~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (255)
T 2dkn_A 65 GLVCCAGVGVT---AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIE 141 (255)
T ss_dssp EEEECCCCCTT---SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHH
T ss_pred EEEECCCCCCc---chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhh
Confidence 99999997642 3457889999999999888876553 568999999999886431100 0 0110
Q ss_pred ----CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 213 ----PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 213 ----~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
+..+...|+.||++.|.+++.++.+ .|++++++|||.++|+. ............
T Consensus 142 ~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~-------------------~~~~~~~~~~~~ 202 (255)
T 2dkn_A 142 LAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPL-------------------LQASKADPRYGE 202 (255)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHH-------------------HHHHHHCTTTHH
T ss_pred hccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchh-------------------hhhcccchhhHH
Confidence 1135678999999999999999877 79999999999999863 111111000000
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcccHHH
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSVKE 343 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~~e 343 (413)
. .... .+ ...++++++|+|++++.++..+. ...+++|++++|...++.|
T Consensus 203 ~-~~~~-------~~-~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e 252 (255)
T 2dkn_A 203 S-TRRF-------VA-PLGRGSEPREVAEAIAFLLGPQASFIHGSVLFVDGGMDALMRA 252 (255)
T ss_dssp H-HHSC-------CC-TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTHHHHHCT
T ss_pred H-HHHH-------HH-HhcCCCCHHHHHHHHHHHhCCCcccceeeEEEecCCeEeeeec
Confidence 0 0000 01 33578999999999999998652 2235799999887776643
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=223.13 Aligned_cols=230 Identities=15% Similarity=0.074 Sum_probs=169.8
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |+||||||+||||++++++|+++|++|++++|+....++..+.+.+.. ..++.++.+|++|++++++++++
T Consensus 38 ~l~~-k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~ 114 (293)
T 3rih_A 38 DLSA-RSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG--AGNVIGVRLDVSDPGSCADAARTVV 114 (293)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS--SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC--CCcEEEEEEeCCCHHHHHHHHHHHH
Confidence 4556 999999999999999999999999999999986555444444443321 15789999999999999888765
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++ ++.+.++||++||...+. .
T Consensus 115 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~----------~ 184 (293)
T 3rih_A 115 DAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPV----------T 184 (293)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTT----------B
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhcc----------C
Confidence 58999999999865433 22334567889999977766655 566778999999976531 0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
+..+..+|+.||++.+.+++.++.+ .|+++++|+||.|+++... .+.+..........+
T Consensus 185 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~p--- 246 (293)
T 3rih_A 185 GYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLV---------------DMGEEYISGMARSIP--- 246 (293)
T ss_dssp BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHH---------------HTCHHHHHHHHTTST---
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchh---------------hccHHHHHHHHhcCC---
Confidence 1223678999999999999999888 6899999999999986421 111223333333222
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
...+...+|+|+++++++.... ...++++++.+|..+
T Consensus 247 -------------~~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~~~ 284 (293)
T 3rih_A 247 -------------MGMLGSPVDIGHLAAFLATDEAGYITGQAIVVDGGQVL 284 (293)
T ss_dssp -------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTC
T ss_pred -------------CCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccC
Confidence 1245688999999999987542 234689999888654
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-28 Score=220.96 Aligned_cols=232 Identities=13% Similarity=0.100 Sum_probs=167.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+++ |++|||||+|+||.+++++|+++|++|++++|+.... .+...++...+.++.++.+|++|++++++++++
T Consensus 3 ~l~~-k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (257)
T 3imf_A 3 AMKE-KVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKL---EEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQID 78 (257)
T ss_dssp TTTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 3456 9999999999999999999999999999998754333 333333434456899999999999999988865
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH-----HHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM-----ARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~-----~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++ ++.+.++||++||...+...
T Consensus 79 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 150 (257)
T 3imf_A 79 EKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAG-------- 150 (257)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCC--------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCC--------
Confidence 48999999999764433 22344567889999977666555 33447899999998776432
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh----CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN----SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
.+...|+.||++.+.+++.++.+ +|+++++|+||.|.++...... ...+..........
T Consensus 151 ---~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~------------~~~~~~~~~~~~~~-- 213 (257)
T 3imf_A 151 ---PGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKL------------WISEEMAKRTIQSV-- 213 (257)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------------------CCSHHHHTTS--
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhc------------ccCHHHHHHHHhcC--
Confidence 23678999999999999998865 4899999999999987532110 00000111111111
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCccc
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGRS 340 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~s 340 (413)
....+..++|+|+++++++..... ..++++++.+|..++
T Consensus 214 --------------p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~~ 253 (257)
T 3imf_A 214 --------------PLGRLGTPEEIAGLAYYLCSDEAAYINGTCMTMDGGQHLH 253 (257)
T ss_dssp --------------TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTSC
T ss_pred --------------CCCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCCcccC
Confidence 123578999999999999875432 345899998887654
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=216.87 Aligned_cols=224 Identities=15% Similarity=0.068 Sum_probs=160.0
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-C
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-N 144 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~ 144 (413)
...+ |+||||||+||||++++++|+++|++|++++|+... ..+...++ ...+.++.+|++|.+++.+++++ .
T Consensus 11 ~~~~-k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 83 (249)
T 3f9i_A 11 DLTG-KTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEK---LKSLGNAL---KDNYTIEVCNLANKEECSNLISKTS 83 (249)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHH---CSSEEEEECCTTSHHHHHHHHHTCS
T ss_pred cCCC-CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHH---HHHHHHHh---ccCccEEEcCCCCHHHHHHHHHhcC
Confidence 4456 999999999999999999999999999999875432 22322333 24788999999999999999876 4
Q ss_pred CCcEEEEcCcccCcc----CCcCChHHHHHHHHHHHHHHHH----HHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVG----ESTLDPLKYYHNITSNTLVVLE----SMARHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~----~~~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
++|+||||||+.... ...++.+..+++|+.++.++++ .+++.+.++||++||...+... .+
T Consensus 84 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------~~ 152 (249)
T 3f9i_A 84 NLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGN-----------PG 152 (249)
T ss_dssp CCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CC-----------SC
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCC-----------CC
Confidence 799999999986532 2345677889999999666554 4556677899999998776432 23
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
...|+.||++.+.+++.++.+ .|+++++++||.|.++... .+.+..........
T Consensus 153 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~-------- 209 (249)
T 3f9i_A 153 QANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTD---------------KLNEKQREAIVQKI-------- 209 (249)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC---------------------CCHHHHHHHHHHC--------
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCccc---------------ccCHHHHHHHHhcC--------
Confidence 678999999999999999887 6899999999999987532 11222222222211
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCc
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKG 338 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~ 338 (413)
....+.+++|+|++++.++..... ..+++|++.+|..
T Consensus 210 --------~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG~~ 247 (249)
T 3f9i_A 210 --------PLGTYGIPEDVAYAVAFLASNNASYITGQTLHVNGGML 247 (249)
T ss_dssp --------TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred --------CCCCCcCHHHHHHHHHHHcCCccCCccCcEEEECCCEe
Confidence 123578999999999999985432 3458999987754
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=218.58 Aligned_cols=226 Identities=14% Similarity=0.090 Sum_probs=165.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+||||++++++|+++|++|++++|... +...+...++...+.++.++.+|++|++++++++++
T Consensus 25 ~l~~-k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~ 101 (269)
T 4dmm_A 25 PLTD-RIALVTGASRGIGRAIALELAAAGAKVAVNYASSA--GAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVI 101 (269)
T ss_dssp TTTT-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCCh--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 3556 99999999999999999999999999999886322 222222222222246789999999999999988865
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.++.+++++ +++.+.++||++||...+...
T Consensus 102 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 172 (269)
T 4dmm_A 102 ERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGN--------- 172 (269)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCC---------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCC---------
Confidence 48999999999865433 2334556788999996665554 566677899999997765322
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.|.++... ... ........+
T Consensus 173 --~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~---------------~~~---~~~~~~~~p--- 229 (269)
T 4dmm_A 173 --PGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTS---------------ELA---AEKLLEVIP--- 229 (269)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSC---------------HHH---HHHHGGGCT---
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCcccc---------------ccc---HHHHHhcCC---
Confidence 23678999999999999999887 6899999999999987421 111 122222211
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhc-C-CCCccEEEecCCCcc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-Q-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~-~~~~~~yni~~~~~~ 339 (413)
...+.+++|+|+++++++..+ . ...++++++.+|..+
T Consensus 230 -------------~~r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdGG~~~ 268 (269)
T 4dmm_A 230 -------------LGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGLVM 268 (269)
T ss_dssp -------------TSSCBCHHHHHHHHHHHHHCGGGGGCCSCEEEESTTSCC
T ss_pred -------------CCCCCCHHHHHHHHHHHhCCcccCCCcCCEEEECCCeec
Confidence 235788999999999999852 2 234589999887654
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-28 Score=221.42 Aligned_cols=235 Identities=16% Similarity=0.085 Sum_probs=160.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcC----CCCceEEEEccCCCHHHHHHHhh
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFP----EPGRLQFIYADLGDAKAVNKFFS 142 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~ 142 (413)
+.+ |+||||||+||||++++++|+++|++|++++|+....++..+.+..... ...++.++.+|++|.++++++++
T Consensus 5 ~~~-k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 83 (264)
T 2pd6_A 5 LRS-ALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLE 83 (264)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHH
T ss_pred cCC-CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHH
Confidence 445 8999999999999999999999999999998754332222222211100 01468899999999999988876
Q ss_pred c-----CCC-cEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHH----cC-CCEEEEeccceecCCCCCCC
Q 015080 143 E-----NAF-DAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMAR----HG-VDTLIYSSTCATYGEPEKMP 207 (413)
Q Consensus 143 ~-----~~~-dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~iV~~SS~~~~~~~~~~~ 207 (413)
. .++ |+||||||+..... ..++.+..+++|+.++.++++++.+ .+ .++||++||...+...
T Consensus 84 ~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 159 (264)
T 2pd6_A 84 QVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGN---- 159 (264)
T ss_dssp HHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCC----
T ss_pred HHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCC----
Confidence 5 456 99999999865432 2334556789999998887776554 34 5799999997654321
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcc
Q 015080 208 ITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGI 284 (413)
Q Consensus 208 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (413)
.+...|+.||++.+.+++.++.+ .|++++++|||.++++... .+.+.+.......
T Consensus 160 -------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~ 217 (264)
T 2pd6_A 160 -------VGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQ---------------KVPQKVVDKITEM 217 (264)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC-------------------------CTGGG
T ss_pred -------CCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchh---------------hcCHHHHHHHHHh
Confidence 23678999999999999999887 7999999999999998532 1111111111111
Q ss_pred ccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcccHHHH
Q 015080 285 IAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSVKEF 344 (413)
Q Consensus 285 ~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~~e~ 344 (413)
. ....+++++|+|++++.++.... ...++++++.+|..++...+
T Consensus 218 ~----------------~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~ 262 (264)
T 2pd6_A 218 I----------------PMGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGGLFMAENLY 262 (264)
T ss_dssp C----------------TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC-------
T ss_pred C----------------CCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCceeccccC
Confidence 1 11357899999999999987532 23457999988876655443
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-27 Score=217.94 Aligned_cols=237 Identities=12% Similarity=0.088 Sum_probs=167.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+....+++.+.+.+ .+.++.++.+|++|++++++++++
T Consensus 8 ~l~~-k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (264)
T 3ucx_A 8 LLTD-KVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTD---TGRRALSVGTDITDDAQVAHLVDETM 83 (264)
T ss_dssp TTTT-CEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcCC-cEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 4556 9999999999999999999999999999998765444444444433 246799999999999999988865
Q ss_pred ---CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+... .. ..++.+..+++|+.++.+++++ +++.+ ++||++||...+...
T Consensus 84 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~-------- 154 (264)
T 3ucx_A 84 KAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-GAVVNVNSMVVRHSQ-------- 154 (264)
T ss_dssp HHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-CEEEEECCGGGGCCC--------
T ss_pred HHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEECcchhccCC--------
Confidence 589999999987522 22 2234456788999997776655 44545 799999998776432
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
.+...|+.||++.+.+++.++.+ +|+++++|+||.|+++....... . .....+...........
T Consensus 155 ---~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~---~-~~~~~~~~~~~~~~~~~------ 221 (264)
T 3ucx_A 155 ---AKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFE---H-QAGKYGTSVEDIYNAAA------ 221 (264)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHH---H-HHHHTTCCHHHHHHHHH------
T ss_pred ---CccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHH---h-hhhhcCCCHHHHHHHHh------
Confidence 23678999999999999999988 78999999999999863110000 0 00000000011111111
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
.......+.+++|+|+++++++.... ...++++++.+|..
T Consensus 222 ----------~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 262 (264)
T 3ucx_A 222 ----------AGSDLKRLPTEDEVASAILFMASDLASGITGQALDVNCGEY 262 (264)
T ss_dssp ----------TTSSSSSCCBHHHHHHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred ----------ccCCcccCCCHHHHHHHHHHHcCccccCCCCCEEEECCCcc
Confidence 12233467899999999999887543 23568999988764
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=218.75 Aligned_cols=226 Identities=15% Similarity=0.102 Sum_probs=164.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+||||++++++|+++|++|++++|+..+.+...+.+.+.. +.++.++.+|++|++++++++++
T Consensus 5 ~~~-~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (248)
T 2pnf_A 5 LQG-KVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY--GVKAHGVEMNLLSEESINKAFEEIYN 81 (248)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH--CCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhc--CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 456 899999999999999999999999999999875433333333332211 35789999999999999988864
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHH----HHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNT----LVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~----~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||...... ..++.+..+++|+.++ +.+++.+++.+.++||++||...+...
T Consensus 82 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 151 (248)
T 2pnf_A 82 LVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGN---------- 151 (248)
T ss_dssp HSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCC----------
T ss_pred hcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCC----------
Confidence 48999999999765332 2234456789999998 555666667778899999997654321
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+...|+.||++.+.+++.++.+ .|+++++++||.++++... .+............+
T Consensus 152 -~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~---- 211 (248)
T 2pnf_A 152 -VGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTA---------------VLSEEIKQKYKEQIP---- 211 (248)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGG---------------GSCHHHHHHHHHTCT----
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhh---------------hccHHHHHHHHhcCC----
Confidence 22578999999999999998876 5899999999999987421 111122222221111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGK 337 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~ 337 (413)
...+++++|+|++++.++... ....+++|++.+|.
T Consensus 212 ------------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 247 (248)
T 2pnf_A 212 ------------LGRFGSPEEVANVVLFLCSELASYITGEVIHVNGGM 247 (248)
T ss_dssp ------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred ------------CCCccCHHHHHHHHHHHhCchhhcCCCcEEEeCCCc
Confidence 135789999999999998753 22345799997763
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=218.58 Aligned_cols=229 Identities=14% Similarity=0.063 Sum_probs=165.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+||||++++++|+++|++|++++|+....+...+.+.. .+.++.++.+|++|++++++++++
T Consensus 11 l~~-k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (260)
T 3awd_A 11 LDN-RVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRM---EGHDVSSVVMDVTNTESVQNAVRSVHE 86 (260)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 445 8999999999999999999999999999998764333333333332 235789999999999999988864
Q ss_pred --CCCcEEEEcCcccC-ccC----CcCChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAY-VGE----STLDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~-~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+.. ... ..++.+..+++|+.++.++++++. +.+.++||++||.+.+...
T Consensus 87 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------- 157 (260)
T 3awd_A 87 QEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVN--------- 157 (260)
T ss_dssp HHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccC---------
Confidence 48999999999764 222 122235678899999877766654 4567899999997765321
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
+..+...|+.||++.|.+++.++.+ .|++++++|||.++++..... ...+..........+
T Consensus 158 ~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~-------------~~~~~~~~~~~~~~~--- 221 (260)
T 3awd_A 158 RPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFG-------------MEKPELYDAWIAGTP--- 221 (260)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHH-------------HTCHHHHHHHHHTCT---
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcc-------------cCChHHHHHHHhcCC---
Confidence 1223478999999999999999888 799999999999999852100 001122222222111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...+++++|+|++++.++.... ...+++|++.+|.
T Consensus 222 -------------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 257 (260)
T 3awd_A 222 -------------MGRVGQPDEVASVVQFLASDAASLMTGAIVNVDAGF 257 (260)
T ss_dssp -------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred -------------cCCCCCHHHHHHHHHHHhCchhccCCCcEEEECCce
Confidence 1257899999999999987532 2345799998774
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=215.85 Aligned_cols=232 Identities=16% Similarity=0.064 Sum_probs=164.5
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
.+ |++|||||+|+||++++++|+++|++|++++|+.. +...+.+.. .+.++.++.+|++|++++++++++
T Consensus 3 ~~-k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 76 (255)
T 2q2v_A 3 KG-KTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIAR---HGVKAVHHPADLSDVAQIEALFALAERE 76 (255)
T ss_dssp TT-CEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHT---TSCCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHh---cCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence 35 89999999999999999999999999999987543 333333332 235788999999999999988864
Q ss_pred -CCCcEEEEcCcccCccC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||+..... ..++.+..+++|+.+ ++.+++.|++.+.++||++||...+...
T Consensus 77 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 145 (255)
T 2q2v_A 77 FGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGS----------- 145 (255)
T ss_dssp HSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC-----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccCC-----------
Confidence 48999999999764432 223345678899996 5566777777778899999998776432
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc-cceeE
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII-AGLKV 290 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~ 290 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.|++|... .+.... ....... .....
T Consensus 146 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~-~~~~~~~~~~~~~ 209 (255)
T 2q2v_A 146 TGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQ---------------KQIDDR-AANGGDPLQAQHD 209 (255)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHH---------------HHHHHH-HHHTCCHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchh---------------hhcccc-cccccchHHHHHH
Confidence 23678999999999999999988 5899999999999986310 010000 0000000 00000
Q ss_pred e-cccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCc
Q 015080 291 K-GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKG 338 (413)
Q Consensus 291 ~-g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~ 338 (413)
. . .......+++++|+|+++++++..... ..+++|++.+|..
T Consensus 210 ~~~------~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~~ 253 (255)
T 2q2v_A 210 LLA------EKQPSLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGGWL 253 (255)
T ss_dssp HHT------TTCTTCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred HHh------ccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECCCcc
Confidence 0 0 112234689999999999998875432 2457999987754
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=217.08 Aligned_cols=245 Identities=15% Similarity=0.087 Sum_probs=169.0
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC-------------CCchhhhhhhhhcCCCCceEEEEccCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR-------------GNIGAVKVLQELFPEPGRLQFIYADLG 132 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 132 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+.. ..+.+.+....+...+.++.++.+|++
T Consensus 8 ~l~~-k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 86 (286)
T 3uve_A 8 RVEG-KVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVR 86 (286)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred ccCC-CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCC
Confidence 4567 99999999999999999999999999999998622 233333333444344568999999999
Q ss_pred CHHHHHHHhhc-----CCCcEEEEcCcccCccC-----CcCChHHHHHHHHHHHHHHHHH----HHHcC-CCEEEEeccc
Q 015080 133 DAKAVNKFFSE-----NAFDAVMHFAAVAYVGE-----STLDPLKYYHNITSNTLVVLES----MARHG-VDTLIYSSTC 197 (413)
Q Consensus 133 d~~~~~~~~~~-----~~~dvvi~~Ag~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~----~~~~~-~~~iV~~SS~ 197 (413)
|++++++++++ .++|+||||||+..... ..++.+..+++|+.++.+++++ +++.+ .++||++||.
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~ 166 (286)
T 3uve_A 87 DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSV 166 (286)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECch
Confidence 99999988865 58999999999865432 2334556789999996665554 44544 5799999998
Q ss_pred eecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCC-CCCcccccccch
Q 015080 198 ATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGE-APRPELREHGRI 273 (413)
Q Consensus 198 ~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~-~~~~~~~~~~~~ 273 (413)
..+... .+...|+.||++.+.+++.++.+ .|+++++|+||.|.++........ ...+... ...
T Consensus 167 ~~~~~~-----------~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~--~~~ 233 (286)
T 3uve_A 167 GGLKAY-----------PHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLE--NPG 233 (286)
T ss_dssp GGTSCC-----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHHHHCTTSS--SCC
T ss_pred hhccCC-----------CCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccchhhhcccccc--ccc
Confidence 776432 23678999999999999999888 689999999999998753210000 0000000 000
Q ss_pred HHHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 274 SGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 274 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
........... .... ..+.+++|+|+++++++.... -..|+++++.+|..+
T Consensus 234 ~~~~~~~~~~~--------------~~~p-~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~~l 285 (286)
T 3uve_A 234 PDDMAPICQMF--------------HTLP-IPWVEPIDISNAVLFFASDEARYITGVTLPIDAGSCL 285 (286)
T ss_dssp HHHHHHHHHTT--------------CSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred hhhHHHHHHhh--------------hccC-CCcCCHHHHHHHHHHHcCccccCCcCCEEeECCcccc
Confidence 00000000000 1111 467899999999999987542 235689999887654
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=220.06 Aligned_cols=238 Identities=13% Similarity=0.058 Sum_probs=163.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCC-CCceEEEEccCCCHHHHHHHhhc-
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE-PGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
.+++ |++|||||+||||++++++|+++|++|++++|.. .+...+...++... +..+.++.+|++|++++++++++
T Consensus 22 ~l~~-k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 98 (281)
T 3v2h_A 22 SMMT-KTAVITGSTSGIGLAIARTLAKAGANIVLNGFGA--PDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMV 98 (281)
T ss_dssp CCTT-CEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCC--HHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHH
T ss_pred ccCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC--hHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 3556 8999999999999999999999999999998632 22222222222221 35789999999999999988865
Q ss_pred ----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+..... ..++.+..+++|+.++.+++++ +++.+.++||++||...+...
T Consensus 99 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 170 (281)
T 3v2h_A 99 ADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVAS-------- 170 (281)
T ss_dssp HHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------
T ss_pred HHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCC--------
Confidence 48999999999865443 2233456788999997666555 466677899999998776432
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHH--HHhcccc
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFD--AARGIIA 286 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 286 (413)
.+..+|+.||++.+.+++.++.+ .|+++++|+||.|.++...... +.... .......
T Consensus 171 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~---------------~~~~~~~~~~~~~~ 232 (281)
T 3v2h_A 171 ---PFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQI---------------PDQARTRGITEEQV 232 (281)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC------------------------------------
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhc---------------chhhhhcCCCHHHH
Confidence 23678999999999999999887 5899999999999987532110 00000 0000000
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...... ++.....+++++|+|+++++++.... ...++++++.+|..
T Consensus 233 ~~~~~~------~~~p~~r~~~~edvA~~v~~L~s~~a~~itG~~i~vdGG~~ 279 (281)
T 3v2h_A 233 INEVML------KGQPTKKFITVEQVASLALYLAGDDAAQITGTHVSMDGGWT 279 (281)
T ss_dssp -------------CCTTCSCBCHHHHHHHHHHHHSSGGGGCCSCEEEESTTGG
T ss_pred HHHHHH------hcCCCCCccCHHHHHHHHHHHcCCCcCCCCCcEEEECCCcc
Confidence 000011 33344678999999999999987542 22457999987743
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=217.72 Aligned_cols=224 Identities=15% Similarity=0.072 Sum_probs=163.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhh-cCCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQEL-FPEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
|++|||||+|+||++++++|+++|++|++++|+.... .+..+++ ...+.++.++.+|++|++++++++++ .
T Consensus 3 k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (250)
T 2cfc_A 3 RVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETL---EETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFG 79 (250)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999998754322 2222222 12235789999999999999988864 4
Q ss_pred CCcEEEEcCcccCccC-------CcCChHHHHHHHHHHHH----HHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGE-------STLDPLKYYHNITSNTL----VVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~-------~~~~~~~~~~~n~~~~~----~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
++|+||||||+..... ..++.+..+++|+.++. .+++.+++.+.++||++||...+...
T Consensus 80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~---------- 149 (250)
T 2cfc_A 80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAF---------- 149 (250)
T ss_dssp CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCC----------
Confidence 8999999999764322 22345567889999864 55666666778899999998776432
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+...|+.||++.+.+++.++.+ .|++++++|||.++++..... ...+.+...+....+
T Consensus 150 -~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~-------------~~~~~~~~~~~~~~~---- 211 (250)
T 2cfc_A 150 -PGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWR-------------LDQPELRDQVLARIP---- 211 (250)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHH-------------HTSHHHHHHHHTTCT----
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccc-------------cCCHHHHHHHHhcCC----
Confidence 23678999999999999999877 499999999999999852100 000112222222211
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
...+.+++|+|++++.++..... ..++++++.+|.
T Consensus 212 ------------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 247 (250)
T 2cfc_A 212 ------------QKEIGTAAQVADAVMFLAGEDATYVNGAALVMDGAY 247 (250)
T ss_dssp ------------TCSCBCHHHHHHHHHHHHSTTCTTCCSCEEEESTTG
T ss_pred ------------CCCCcCHHHHHHHHHHHcCchhhcccCCEEEECCce
Confidence 12578999999999999875432 245799997764
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=226.70 Aligned_cols=230 Identities=15% Similarity=0.165 Sum_probs=173.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+||||||||+||++++++|++.|++|++++|+........+.+.. .+++++.+|++|++++.+++ .++|+||
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~-----~~v~~v~~Dl~d~~~l~~a~--~~~d~vi 84 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQS-----LGAIIVKGELDEHEKLVELM--KKVDVVI 84 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHH-----TTCEEEECCTTCHHHHHHHH--TTCSEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhc-----CCCEEEEecCCCHHHHHHHH--cCCCEEE
Confidence 5899999999999999999999999999999865422211111211 46899999999999999999 6799999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccceecCCCCCCCCCCCCCCCC-CChhHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VDTLIYSSTCATYGEPEKMPITEETPQAP-INPYGKAKKMAE 228 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~~-~~~Y~~sK~~~e 228 (413)
|+|+... +.+++++++++++.+ +++||+ | +||.. .+|..+..| ...| .+|.++|
T Consensus 85 ~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~----~~~~~~~~p~~~~y-~sK~~~e 140 (318)
T 2r6j_A 85 SALAFPQ---------------ILDQFKILEAIKVAGNIKRFLP-S---DFGVE----EDRINALPPFEALI-ERKRMIR 140 (318)
T ss_dssp ECCCGGG---------------STTHHHHHHHHHHHCCCCEEEC-S---CCSSC----TTTCCCCHHHHHHH-HHHHHHH
T ss_pred ECCchhh---------------hHHHHHHHHHHHhcCCCCEEEe-e---ccccC----cccccCCCCcchhH-HHHHHHH
Confidence 9998532 345789999999998 999985 3 34422 122223333 3468 9999999
Q ss_pred HHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeeccc
Q 015080 229 DIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308 (413)
Q Consensus 229 ~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~ 308 (413)
.++++ .|++++++||+.+++ .+.+.+......... +.+.+ +++..++|++
T Consensus 141 ~~~~~----~~~~~~~lr~~~~~~-------------------~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~i~ 190 (318)
T 2r6j_A 141 RAIEE----ANIPYTYVSANCFAS-------------------YFINYLLRPYDPKDE-ITVYG------TGEAKFAMNY 190 (318)
T ss_dssp HHHHH----TTCCBEEEECCEEHH-------------------HHHHHHHCTTCCCSE-EEEET------TSCCEEEEEC
T ss_pred HHHHh----cCCCeEEEEcceehh-------------------hhhhhhccccCCCCc-eEEec------CCCceeeEee
Confidence 98875 789999999988775 333333322222223 55555 7788899999
Q ss_pred HHHHHHHHHHHHHhcCCCCccEEEecC-CCcccHHHHHHHHHHHcCCCceeEecC
Q 015080 309 VNDLVDAHVKALERAQPKKVGIYNVGT-GKGRSVKEFVEACKKATSANIKVIYEP 362 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~~~~~~~yni~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~ 362 (413)
++|+|++++.++..+... +++|++.+ ++.+|+.|+++.+.+.+|.+.++...+
T Consensus 191 ~~Dva~~~~~~l~~~~~~-~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (318)
T 2r6j_A 191 EQDIGLYTIKVATDPRAL-NRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVP 244 (318)
T ss_dssp HHHHHHHHHHHTTCGGGT-TEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEEC
T ss_pred HHHHHHHHHHHhcCcccc-CeEEEecCCCCccCHHHHHHHHHHHhCCCCceeecC
Confidence 999999999999865432 36788765 478999999999999999998776554
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=219.41 Aligned_cols=229 Identities=16% Similarity=0.144 Sum_probs=167.2
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|. . ...+...++...+.++.++.+|++|.++++++.+.
T Consensus 28 ~l~g-k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~---~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (273)
T 3uf0_A 28 SLAG-RTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-D---GVKEVADEIADGGGSAEAVVADLADLEGAANVAEELA 102 (273)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-T---HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-H---HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 4567 999999999999999999999999999999853 2 22333333333456899999999999998877543
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHH----HHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLE----SMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++ .+++.+.++||++||...+...
T Consensus 103 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~---------- 172 (273)
T 3uf0_A 103 ATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGG---------- 172 (273)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred hcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCC----------
Confidence 58999999999875433 223345678899999766555 4566677899999998876432
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.|.++..... ...+..........+
T Consensus 173 -~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~p---- 234 (273)
T 3uf0_A 173 -RNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAAL-------------RADDERAAEITARIP---- 234 (273)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHH-------------HTSHHHHHHHHHHST----
T ss_pred -CCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhc-------------ccCHHHHHHHHhcCC----
Confidence 23678999999999999999988 789999999999998642100 001111122221111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
...+.+++|+|+++++++.... ...++++++.+|...
T Consensus 235 ------------~~r~~~pedva~~v~~L~s~~a~~itG~~i~vdGG~~~ 272 (273)
T 3uf0_A 235 ------------AGRWATPEDMVGPAVFLASDAASYVHGQVLAVDGGWLA 272 (273)
T ss_dssp ------------TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred ------------CCCCCCHHHHHHHHHHHhCchhcCCcCCEEEECcCccC
Confidence 1356889999999999987542 335689999887654
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=216.55 Aligned_cols=224 Identities=12% Similarity=0.053 Sum_probs=164.7
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+....++..+. + .....++.+|++|++++++++++
T Consensus 6 ~l~g-k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~---~---~~~~~~~~~Dv~d~~~v~~~~~~~~ 78 (248)
T 3op4_A 6 NLEG-KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDY---L---GDNGKGMALNVTNPESIEAVLKAIT 78 (248)
T ss_dssp CCTT-CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---H---GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---h---cccceEEEEeCCCHHHHHHHHHHHH
Confidence 3556 9999999999999999999999999999998754333322222 2 23578899999999999988865
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.++.+++++ +++.+.++||++||...+..
T Consensus 79 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~---------- 148 (248)
T 3op4_A 79 DEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMG---------- 148 (248)
T ss_dssp HHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC----------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCC----------
Confidence 48999999999865433 2334456788999996665555 45567789999999776532
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
..+..+|+.||++.+.+++.++.+ .|+++++|+||.|..+... .+.+..........+
T Consensus 149 -~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~---------------~~~~~~~~~~~~~~p--- 209 (248)
T 3op4_A 149 -NAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTK---------------ALNDEQRTATLAQVP--- 209 (248)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTT---------------TSCHHHHHHHHHTCT---
T ss_pred -CCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhh---------------hcCHHHHHHHHhcCC---
Confidence 223678999999999999999887 5899999999999887532 111111222221111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...+.+++|+|+++++++.... ...++++++.+|..
T Consensus 210 -------------~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdgG~~ 246 (248)
T 3op4_A 210 -------------AGRLGDPREIASAVAFLASPEAAYITGETLHVNGGMY 246 (248)
T ss_dssp -------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred -------------CCCCcCHHHHHHHHHHHcCCccCCccCcEEEECCCee
Confidence 2357899999999999887543 23458999987753
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=219.09 Aligned_cols=227 Identities=15% Similarity=0.146 Sum_probs=165.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEE-ecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIV-DNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
|++|||||+||||++++++|+++|++|+++ +|+. +...+...++...+.++.++.+|++|++++++++++ .
T Consensus 5 k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (258)
T 3oid_A 5 KCALVTGSSRGVGKAAAIRLAENGYNIVINYARSK---KAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG 81 (258)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCH---HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999986 5433 233333333333356899999999999999988865 5
Q ss_pred CCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
++|+||||||+...... .++.+..+++|+.++.+++++ +++.+.++||++||...+.. ..+
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~-----------~~~ 150 (258)
T 3oid_A 82 RLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRY-----------LEN 150 (258)
T ss_dssp CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSB-----------CTT
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCC-----------CCC
Confidence 89999999997554332 233445788999996665555 46666789999999876632 233
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
...|+.||++.+.+++.++.+ .|+++++++||.|.++..... .-............+
T Consensus 151 ~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~p------- 210 (258)
T 3oid_A 151 YTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHF-------------PNREDLLEDARQNTP------- 210 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGC-------------TTHHHHHHHHHHHCT-------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhc-------------ccCHHHHHHHHhcCC-------
Confidence 678999999999999999988 489999999999988642110 001122222222211
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCccc
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRS 340 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s 340 (413)
...+.+++|+|+++++++.... ...++++++.+|....
T Consensus 211 ---------~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdGG~~~~ 249 (258)
T 3oid_A 211 ---------AGRMVEIKDMVDTVEFLVSSKADMIRGQTIIVDGGRSLL 249 (258)
T ss_dssp ---------TSSCBCHHHHHHHHHHHTSSTTTTCCSCEEEESTTGGGB
T ss_pred ---------CCCCcCHHHHHHHHHHHhCcccCCccCCEEEECCCccCC
Confidence 1357899999999999987543 2346899998886543
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=217.23 Aligned_cols=226 Identities=17% Similarity=0.142 Sum_probs=162.8
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-C
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-N 144 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~ 144 (413)
.+.+ |+||||||+||||++++++|+++|++|++++|+.. ...+...+. .++.++.+|++|++++++++++ .
T Consensus 4 ~l~~-k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~---~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~ 75 (244)
T 3d3w_A 4 FLAG-RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA---DLDSLVREC----PGIEPVCVDLGDWEATERALGSVG 75 (244)
T ss_dssp CCTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHHS----TTCEEEECCTTCHHHHHHHHTTCC
T ss_pred ccCC-cEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHHHc----CCCCEEEEeCCCHHHHHHHHHHcC
Confidence 3456 89999999999999999999999999999987532 222222222 2467789999999999999865 3
Q ss_pred CCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHH----HcC-CCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMA----RHG-VDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
++|+||||||+..... ..+..+..+++|+.++.++++++. +.+ .++||++||...+.. ..
T Consensus 76 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-----------~~ 144 (244)
T 3d3w_A 76 PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRA-----------VT 144 (244)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC-----------CT
T ss_pred CCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccC-----------CC
Confidence 6999999999765432 223345688999999666665554 445 689999999877643 23
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
+..+|+.||++.|.+++.++.+ .|+++++++||.|+++....... .+..........
T Consensus 145 ~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~-------------~~~~~~~~~~~~------- 204 (244)
T 3d3w_A 145 NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWS-------------DPHKAKTMLNRI------- 204 (244)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSC-------------STTHHHHHHHTC-------
T ss_pred CCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhcc-------------ChHHHHHHHhhC-------
Confidence 3678999999999999999877 58999999999999874210000 000111111111
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
....+++++|+|++++.++.... ...+++|++.+|...
T Consensus 205 ---------~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~~ 243 (244)
T 3d3w_A 205 ---------PLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGFWA 243 (244)
T ss_dssp ---------TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred ---------CCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCccC
Confidence 12368899999999999997543 224579999887543
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-28 Score=222.28 Aligned_cols=229 Identities=17% Similarity=0.132 Sum_probs=165.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+|+||++++++|+++|++|++++|+..+.++..+.+.. .+.++.++.+|++|.+++++++++
T Consensus 12 l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 87 (260)
T 2zat_A 12 LEN-KVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQG---EGLSVTGTVCHVGKAEDRERLVAMAVN 87 (260)
T ss_dssp TTT-CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 446 8999999999999999999999999999998754333333333322 235788999999999999888764
Q ss_pred --CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHHHH----HHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVVLE----SMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+... .. ..++.+..+++|+.++.++++ .|++.+.++||++||..++...
T Consensus 88 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 158 (260)
T 2zat_A 88 LHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPF--------- 158 (260)
T ss_dssp HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC---------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCC---------
Confidence 489999999997531 11 223345678899999755554 4556677899999998877432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccch-HHHHHHHHhccccce
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRI-SGACFDAARGIIAGL 288 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i 288 (413)
.+..+|+.||++.+.+++.++.+ .|+++++++||.+.++.... .+ ............
T Consensus 159 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--------------~~~~~~~~~~~~~~~--- 219 (260)
T 2zat_A 159 --PNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQV--------------LWMDKARKEYMKESL--- 219 (260)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHH--------------HHSSHHHHHHHHHHH---
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchh--------------cccChHHHHHHHhcC---
Confidence 23678999999999999999887 58999999999998864110 00 000011111111
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCccc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGRS 340 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~s 340 (413)
....+++++|+|+++++++..... ..+++|++.+|...+
T Consensus 220 -------------~~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~s 259 (260)
T 2zat_A 220 -------------RIRRLGNPEDCAGIVSFLCSEDASYITGETVVVGGGTASR 259 (260)
T ss_dssp -------------TCSSCBCGGGGHHHHHHHTSGGGTTCCSCEEEESTTCCCC
T ss_pred -------------CCCCCCCHHHHHHHHHHHcCcccCCccCCEEEECCCcccc
Confidence 123578999999999999875432 245799999887665
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-28 Score=220.79 Aligned_cols=233 Identities=13% Similarity=0.037 Sum_probs=165.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+||||++++++|+++|++|++++|+....++..+.+.. .+.++.++.+|++|++++++++++
T Consensus 7 l~~-k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (260)
T 2ae2_A 7 LEG-CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS---KGFKVEASVCDLSSRSERQELMNTVAN 82 (260)
T ss_dssp CTT-CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 456 8999999999999999999999999999998754333333333322 235789999999999999988865
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++ ++.+.++||++||...+..
T Consensus 83 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 152 (260)
T 2ae2_A 83 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALA---------- 152 (260)
T ss_dssp HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSC----------
T ss_pred HcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccC----------
Confidence 57999999999764332 22344567889999977766555 5566789999999876542
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
..+...|+.||++.+.+++.++.+ .|+++++++||.+.++...... ..+ ..... +......
T Consensus 153 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~------~~~~~-~~~~~~~----- 216 (260)
T 2ae2_A 153 -VPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTI---QDP------EQKEN-LNKLIDR----- 216 (260)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHT---TSH------HHHHH-HHHHHHT-----
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhc---cCh------hhHHH-HHHHHhc-----
Confidence 223678999999999999999887 4899999999999875210000 000 00000 0011111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCccc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRS 340 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s 340 (413)
.....+++++|+|+++++++.... ...++++++.+|...+
T Consensus 217 -----------~~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~~~ 257 (260)
T 2ae2_A 217 -----------CALRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGGLMAN 257 (260)
T ss_dssp -----------STTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGC
T ss_pred -----------CCCCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCCcccc
Confidence 112357899999999999887542 2345799998876543
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=217.73 Aligned_cols=245 Identities=16% Similarity=0.144 Sum_probs=172.1
Q ss_pred CCCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 65 QHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 65 ~~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+++ |++|||||+|+||++++++|+++|++|++++|+....++..+.+..... ...+.++.+|++|++++++++++
T Consensus 6 ~~l~~-k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~ 83 (267)
T 3t4x_A 6 MQLKG-KTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYP-DAILQPVVADLGTEQGCQDVIEKY 83 (267)
T ss_dssp CCCTT-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCT-TCEEEEEECCTTSHHHHHHHHHHC
T ss_pred cccCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCC-CceEEEEecCCCCHHHHHHHHHhc
Confidence 34567 9999999999999999999999999999999865544444555544332 25688899999999999998876
Q ss_pred CCCcEEEEcCcccCccCCc----CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 144 NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
.++|+||||||+....... ++.+..+++|+.+ ++.+++.+++.+.++||++||...+.. ..
T Consensus 84 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----------~~ 152 (267)
T 3t4x_A 84 PKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMP-----------SQ 152 (267)
T ss_dssp CCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSC-----------CT
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccC-----------CC
Confidence 4799999999987554322 2334468899999 555677777777789999999877632 23
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCC-CCCCcccccccchHHHHHHH-HhccccceeE
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLG-EAPRPELREHGRISGACFDA-ARGIIAGLKV 290 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~ 290 (413)
+..+|+.||++.+.+++.++.+ .|+++++++||.+.++....... ..+.. .......... .....
T Consensus 153 ~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----- 222 (267)
T 3t4x_A 153 EMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNE-----QLTIEEAEKRFMKENR----- 222 (267)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTS-----CCCHHHHHHHHHHHHC-----
T ss_pred cchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCccc-----CCCHHHHHHHHhhccC-----
Confidence 3778999999999999999988 47999999999998752100000 00000 0000011111 11100
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCccc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKGRS 340 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~~s 340 (413)
.......+.+++|+|+++++++... ....++++++.+|...+
T Consensus 223 --------~~~~~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~~~s 265 (267)
T 3t4x_A 223 --------PTSIIQRLIRPEEIAHLVTFLSSPLSSAINGSALRIDGGLVRS 265 (267)
T ss_dssp --------TTCSSCSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTCSCS
T ss_pred --------CcccccCccCHHHHHHHHHHHcCccccCccCCeEEECCCcccc
Confidence 1112346889999999999988753 23356899998886654
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=216.61 Aligned_cols=224 Identities=11% Similarity=0.066 Sum_probs=152.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEe-cCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVD-NLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
+.+ |+||||||+|+||++++++|+++|++|++++ |+....++..+.+.. .+.++.++.+|++|++++++++++
T Consensus 3 l~~-~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (247)
T 2hq1_A 3 LKG-KTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKA---AGINVVVAKGDVKNPEDVENMVKTAM 78 (247)
T ss_dssp TTT-CEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHH---TTCCEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCC-cEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 345 8999999999999999999999999999984 433222222333322 235789999999999999988864
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHH----HHHHcCCCEEEEecccee-cCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLE----SMARHGVDTLIYSSTCAT-YGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~iV~~SS~~~-~~~~~~~~~~e~ 211 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++ .+++.+.++||++||... ++.
T Consensus 79 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------- 149 (247)
T 2hq1_A 79 DAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGN--------- 149 (247)
T ss_dssp HHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC----------------
T ss_pred HhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC---------
Confidence 48999999999764322 334566789999999655554 455567789999999753 432
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
.+..+|+.||++.+.+++.++.+ .|+++++++||.+.++... .+.+..........
T Consensus 150 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~--- 208 (247)
T 2hq1_A 150 ---AGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTD---------------VLPDKVKEMYLNNI--- 208 (247)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH---------------TSCHHHHHHHHTTS---
T ss_pred ---CCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchh---------------hcchHHHHHHHhhC---
Confidence 23578999999999999999877 4899999999998875210 11111222222211
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
....+++++|+|++++.++.... ...+++|++++|.
T Consensus 209 -------------~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 245 (247)
T 2hq1_A 209 -------------PLKRFGTPEEVANVVGFLASDDSNYITGQVINIDGGL 245 (247)
T ss_dssp -------------TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred -------------CCCCCCCHHHHHHHHHHHcCcccccccCcEEEeCCCc
Confidence 12357899999999999887543 2245799998774
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-28 Score=220.97 Aligned_cols=233 Identities=14% Similarity=0.143 Sum_probs=170.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+... ..+...++ +.++.++.+|++|+++++++++.
T Consensus 6 l~g-k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (255)
T 4eso_A 6 YQG-KKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESN---IARIREEF---GPRVHALRSDIADLNEIAVLGAAAGQ 78 (255)
T ss_dssp TTT-CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHH
Confidence 456 999999999999999999999999999999875432 33333332 35789999999999999887765
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++... ..++||++||...+... .
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------~ 147 (255)
T 4eso_A 79 TLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGH-----------P 147 (255)
T ss_dssp HHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBC-----------T
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCC-----------C
Confidence 58999999999865433 23345567899999999999888764 24699999998776432 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
+...|+.||++.+.+++.++.+ .|+++++|+||.|.+|..... + .+. .....+........+
T Consensus 148 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-~---~~~-----~~~~~~~~~~~~~~p------ 212 (255)
T 4eso_A 148 GMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVA-G---ITE-----AERAEFKTLGDNITP------ 212 (255)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCT-T---SCH-----HHHHHHHHHHHHHST------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccc-c---CCh-----hhHHHHHHHHhccCC------
Confidence 3678999999999999999988 489999999999998753210 0 000 111122222222111
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHH
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVK 342 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~ 342 (413)
...+.+++|+|+++++++.......++++++.+|...++.
T Consensus 213 ----------~~r~~~pedvA~~v~~L~s~~~~itG~~i~vdGG~~~~l~ 252 (255)
T 4eso_A 213 ----------MKRNGTADEVARAVLFLAFEATFTTGAKLAVDGGLGQKLS 252 (255)
T ss_dssp ----------TSSCBCHHHHHHHHHHHHHTCTTCCSCEEEESTTTTTTBC
T ss_pred ----------CCCCcCHHHHHHHHHHHcCcCcCccCCEEEECCCccccCc
Confidence 1346789999999999887533335689999888766543
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=221.13 Aligned_cols=228 Identities=10% Similarity=-0.010 Sum_probs=152.8
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+||||++++++|+++|++|++++|+....++..+.+.. .+.++.++.+|++|.+++++++++
T Consensus 12 l~~-k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 87 (266)
T 1xq1_A 12 LKA-KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK---KGFQVTGSVCDASLRPEREKLMQTVSS 87 (266)
T ss_dssp CTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeeEEEECCCCCHHHHHHHHHHHHH
Confidence 456 8999999999999999999999999999998754333333333322 235789999999999999988865
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++ ++.+.++||++||..++...
T Consensus 88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~--------- 158 (266)
T 1xq1_A 88 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSA--------- 158 (266)
T ss_dssp HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-----------------
T ss_pred HhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccCC---------
Confidence 58999999999764332 22334557889999988877666 56677899999998776432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
.+...|+.||++.+.+++.++.+ .|++++++|||.++++..... ..+.+......
T Consensus 159 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--------------~~~~~~~~~~~------ 216 (266)
T 1xq1_A 159 --SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAV--------------YDDEFKKVVIS------ 216 (266)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC--------------------------------------
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhh--------------cCHHHHHHHHh------
Confidence 23678999999999999999887 499999999999999853210 00001111111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
......+++++|+|++++.++.... ...+++|++.+|...
T Consensus 217 ----------~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~~ 257 (266)
T 1xq1_A 217 ----------RKPLGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGGLTV 257 (266)
T ss_dssp -----------------CCGGGGHHHHHHHTSGGGTTCCSCEEECCCCEEE
T ss_pred ----------cCCCCCCcCHHHHHHHHHHHcCccccCccCcEEEEcCCccc
Confidence 1112357899999999999987532 224579999887543
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=216.84 Aligned_cols=222 Identities=16% Similarity=0.123 Sum_probs=158.4
Q ss_pred CCCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 65 QHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 65 ~~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+.+ |+||||||+||||++++++|+++|++|++++|+.. ...+.+.+. ++.++.+|++|++++++++++
T Consensus 23 m~l~~-k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~---~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~ 93 (260)
T 3gem_A 23 MTLSS-APILITGASQRVGLHCALRLLEHGHRVIISYRTEH---ASVTELRQA-----GAVALYGDFSCETGIMAFIDLL 93 (260)
T ss_dssp ----C-CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCC---HHHHHHHHH-----TCEEEECCTTSHHHHHHHHHHH
T ss_pred cCCCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChH---HHHHHHHhc-----CCeEEECCCCCHHHHHHHHHHH
Confidence 34556 89999999999999999999999999999987543 333333332 478999999999999988865
Q ss_pred ----CCCcEEEEcCcccCccCCc---CChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGEST---LDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~~~---~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+....... ++.+..+++|+.++.+++++ +++.+.++||++||...+...
T Consensus 94 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~--------- 164 (260)
T 3gem_A 94 KTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGS--------- 164 (260)
T ss_dssp HHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCC---------
T ss_pred HHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCC---------
Confidence 5899999999986543322 22345788999996665554 455567899999998776432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKNS--DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+...|+.||++.+.+++.++.+. ++++++|+||.|.++... ............
T Consensus 165 --~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~-----------------~~~~~~~~~~~~----- 220 (260)
T 3gem_A 165 --SKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKD-----------------DAAYRANALAKS----- 220 (260)
T ss_dssp --SSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC--------------------------------C-----
T ss_pred --CCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCC-----------------CHHHHHHHHhcC-----
Confidence 236789999999999999999883 599999999999876421 001111111111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCccc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRS 340 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s 340 (413)
....+..++|+|+++++++.. ....++++++.+|..++
T Consensus 221 -----------p~~r~~~~edva~~v~~L~~~-~~itG~~i~vdGG~~~~ 258 (260)
T 3gem_A 221 -----------ALGIEPGAEVIYQSLRYLLDS-TYVTGTTLTVNGGRHVK 258 (260)
T ss_dssp -----------CSCCCCCTHHHHHHHHHHHHC-SSCCSCEEEESTTTTTC
T ss_pred -----------CCCCCCCHHHHHHHHHHHhhC-CCCCCCEEEECCCcccC
Confidence 112356789999999999853 33356899998887654
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=220.35 Aligned_cols=234 Identities=15% Similarity=0.148 Sum_probs=170.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+.. ...+...++...+.++.++.+|++|+++++++++.
T Consensus 6 l~g-k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (280)
T 3tox_A 6 LEG-KIAIVTGASSGIGRAAALLFAREGAKVVVTARNGN---ALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVR 81 (280)
T ss_dssp TTT-CEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHH---HHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHH---HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 456 89999999999999999999999999999876543 33333344433456899999999999999988865
Q ss_pred --CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+... .. ..++.+..+++|+.++.+++++ +++.+.++||++||...+..
T Consensus 82 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 151 (280)
T 3tox_A 82 RFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTA---------- 151 (280)
T ss_dssp HHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTB----------
T ss_pred HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcC----------
Confidence 589999999997632 11 2334556889999996665554 55666789999999876521
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
+..+..+|+.||++.+.+++.++.+ .|+++++|+||.|.++....... ...+..........+
T Consensus 152 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~-----------~~~~~~~~~~~~~~p--- 217 (280)
T 3tox_A 152 GFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLP-----------GAAPETRGFVEGLHA--- 217 (280)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGST-----------TCCTHHHHHHHTTST---
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhcc-----------ccCHHHHHHHhccCc---
Confidence 2233678999999999999999988 58999999999999875321100 001122222222221
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcccH
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSV 341 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~ 341 (413)
...+.+++|+|+++++++.... ...++++++.+|..++.
T Consensus 218 -------------~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~~~~ 257 (280)
T 3tox_A 218 -------------LKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 257 (280)
T ss_dssp -------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCC
T ss_pred -------------cCCCcCHHHHHHHHHHHhCccccCCcCcEEEECCCccccc
Confidence 2357899999999999987543 23568999988876654
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=209.64 Aligned_cols=220 Identities=14% Similarity=0.106 Sum_probs=162.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-CC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-NA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~ 145 (413)
+.| |++|||||+++||+++++.|+++|++|++++|+....++. ...++..+.+|++|++++++++++ .+
T Consensus 9 f~G-K~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~---------~~~~~~~~~~Dv~~~~~v~~~~~~~g~ 78 (242)
T 4b79_A 9 YAG-QQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAP---------RHPRIRREELDITDSQRLQRLFEALPR 78 (242)
T ss_dssp TTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSC---------CCTTEEEEECCTTCHHHHHHHHHHCSC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhh---------hcCCeEEEEecCCCHHHHHHHHHhcCC
Confidence 357 9999999999999999999999999999999865543321 135789999999999999999987 68
Q ss_pred CcEEEEcCcccCccC--CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCCh
Q 015080 146 FDAVMHFAAVAYVGE--STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINP 219 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~--~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~ 219 (413)
+|+||||||+..+.. ..++++..+++|+.+ ++.+++.+++.+ ++||++||........ ...+
T Consensus 79 iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~-G~IVnisS~~~~~~~~-----------~~~~ 146 (242)
T 4b79_A 79 LDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRG-GSILNIASMYSTFGSA-----------DRPA 146 (242)
T ss_dssp CSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-EEEEEECCGGGTSCCS-----------SCHH
T ss_pred CCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEeeccccCCCC-----------CCHH
Confidence 999999999864322 233455678899988 555667676655 7999999977653222 2678
Q ss_pred hHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccccc
Q 015080 220 YGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYS 296 (413)
Q Consensus 220 Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 296 (413)
|+.||++...+++.++.| +||+++.|.||.|-.|...... --+...+.+.+..| +
T Consensus 147 Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~-------------~~~~~~~~~~~~~P-l-------- 204 (242)
T 4b79_A 147 YSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLK-------------ADVEATRRIMQRTP-L-------- 204 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----C-------------CCHHHHHHHHHTCT-T--------
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhccc-------------CCHHHHHHHHhcCC-C--------
Confidence 999999999999999988 6899999999999877432110 01122223322222 1
Q ss_pred CCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 297 TADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 297 ~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
..+...+|+|+++++++..... -.++++.+.+|.
T Consensus 205 -------gR~g~peeiA~~v~fLaSd~a~~iTG~~l~VDGG~ 239 (242)
T 4b79_A 205 -------ARWGEAPEVASAAAFLCGPGASFVTGAVLAVDGGY 239 (242)
T ss_dssp -------CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred -------CCCcCHHHHHHHHHHHhCchhcCccCceEEECccH
Confidence 2356889999999998864432 355789887663
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=217.53 Aligned_cols=232 Identities=14% Similarity=0.056 Sum_probs=162.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+....++..+.+.+ .+.++.++.+|++|+++++++++.
T Consensus 19 l~~-k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 94 (273)
T 1ae1_A 19 LKG-TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE---KGLNVEGSVCDLLSRTERDKLMQTVAH 94 (273)
T ss_dssp CTT-CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 456 8999999999999999999999999999998764333333333322 245789999999999999888864
Q ss_pred ---CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+...... .++.+..+++|+.++.++++++ ++.+.++||++||...+...
T Consensus 95 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~--------- 165 (273)
T 1ae1_A 95 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSAL--------- 165 (273)
T ss_dssp HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCC---------
T ss_pred HcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCC---------
Confidence 579999999998644322 2334557789999976665554 56667899999998877532
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.|+++........ .+ . ............+
T Consensus 166 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~------~-~~~~~~~~~~~~p--- 231 (273)
T 1ae1_A 166 --PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKK--NP------H-QKEEIDNFIVKTP--- 231 (273)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC----------------------CHHHHHHHHHHST---
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhc--cc------C-cHHHHHHHHhcCC---
Confidence 23678999999999999999887 489999999999999753211000 00 0 0111111111111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...+.+++|+|+++++++.... ...++++++.+|..
T Consensus 232 -------------~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 268 (273)
T 1ae1_A 232 -------------MGRAGKPQEVSALIAFLCFPAASYITGQIIWADGGFT 268 (273)
T ss_dssp -------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred -------------CCCCcCHHHHHHHHHHHhCccccCcCCCEEEECCCcc
Confidence 1247899999999999886432 23457999987754
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=216.14 Aligned_cols=224 Identities=16% Similarity=0.097 Sum_probs=162.3
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEec-CCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN-LSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
.+ |++|||||+|+||++++++|+++|++|++++| +....+++.+.+.. .+.++.++.+|++|++++++++++
T Consensus 3 ~~-k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (246)
T 2uvd_A 3 KG-KVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKK---LGSDAIAVRADVANAEDVTNMVKQTVD 78 (246)
T ss_dssp TT-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 35 89999999999999999999999999999987 32222222233322 235788999999999999988864
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..++.+..+++|+.+ ++.+++.|++.+.++||++||...+...
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 148 (246)
T 2uvd_A 79 VFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGN---------- 148 (246)
T ss_dssp HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCC----------
Confidence 48999999999864432 223345678899999 5566677777777899999998765322
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.+.++..... . . .. ........+
T Consensus 149 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----~--~-----~~----~~~~~~~~p---- 208 (246)
T 2uvd_A 149 -PGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVL----D--E-----NI----KAEMLKLIP---- 208 (246)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCC----C--T-----TH----HHHHHHTCT----
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhc----C--H-----HH----HHHHHhcCC----
Confidence 23578999999999999998877 589999999999988742210 0 0 11 111111111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...+++++|+|+++++++.... ...++++++.+|.
T Consensus 209 ------------~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 244 (246)
T 2uvd_A 209 ------------AAQFGEAQDIANAVTFFASDQSKYITGQTLNVDGGM 244 (246)
T ss_dssp ------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred ------------CCCCcCHHHHHHHHHHHcCchhcCCCCCEEEECcCc
Confidence 1247899999999999987542 2345799997764
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=216.50 Aligned_cols=212 Identities=12% Similarity=0.114 Sum_probs=150.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+....+++.+.+++. +.++.++.+|++|+++++++++.
T Consensus 5 ~~~-k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (252)
T 3h7a_A 5 PRN-ATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA---GGRIVARSLDARNEDEVTAFLNAADA 80 (252)
T ss_dssp CCS-CEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT---TCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEECcCCCHHHHHHHHHHHHh
Confidence 456 89999999999999999999999999999998766555555555443 46899999999999999988865
Q ss_pred -CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||+..... ..++.+..+++|+.++.+ +++.+++.+.++||++||...+.. .
T Consensus 81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----------~ 149 (252)
T 3h7a_A 81 HAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRG-----------G 149 (252)
T ss_dssp HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCC-----------C
T ss_pred hCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCC-----------C
Confidence 48999999999865433 223345578899999655 555566677789999999776532 2
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcE-EEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAV-MILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~-~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+...|+.||++.+.+++.++.+ .|+++ ++++||.|..+.... ..+.......
T Consensus 150 ~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~---------------~~~~~~~~~~-------- 206 (252)
T 3h7a_A 150 SGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRE---------------RREQMFGKDA-------- 206 (252)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------------------------------------------
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhc---------------cchhhhhhhh--------
Confidence 23678999999999999999887 58999 899999998764211 1011000000
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP 325 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 325 (413)
...... +++++|+|+++++++..+..
T Consensus 207 --------~~~~~~-~~~pedvA~~~~~l~s~~~~ 232 (252)
T 3h7a_A 207 --------LANPDL-LMPPAAVAGAYWQLYQQPKS 232 (252)
T ss_dssp ----------------CCHHHHHHHHHHHHHCCGG
T ss_pred --------hcCCcc-CCCHHHHHHHHHHHHhCchh
Confidence 111223 78999999999999985443
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-27 Score=216.99 Aligned_cols=239 Identities=15% Similarity=0.082 Sum_probs=168.7
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC----------CCchhhhhhhhhcCCCCceEEEEccCCCHH
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR----------GNIGAVKVLQELFPEPGRLQFIYADLGDAK 135 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 135 (413)
.+.+ |++|||||+|+||.+++++|+++|++|++++|..+ +.+...+....+...+..+.++.+|++|++
T Consensus 8 ~l~~-k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 86 (277)
T 3tsc_A 8 KLEG-RVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFD 86 (277)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred ccCC-CEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 4567 99999999999999999999999999999988432 333333333333333467999999999999
Q ss_pred HHHHHhhc-----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHH----HHHcC-CCEEEEeccceecC
Q 015080 136 AVNKFFSE-----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLES----MARHG-VDTLIYSSTCATYG 201 (413)
Q Consensus 136 ~~~~~~~~-----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~-~~~iV~~SS~~~~~ 201 (413)
++++++++ .++|+||||||+..... ..++.+..+++|+.++.+++++ +++.+ .++||++||...+.
T Consensus 87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~ 166 (277)
T 3tsc_A 87 RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK 166 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC
Confidence 99988865 68999999999875533 2334556789999996665554 55554 57999999988764
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHH
Q 015080 202 EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACF 278 (413)
Q Consensus 202 ~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (413)
.. .+...|+.||++.+.+++.++.+ .|+++++|+||.|.++.... .......
T Consensus 167 ~~-----------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~--------------~~~~~~~ 221 (277)
T 3tsc_A 167 MQ-----------PFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSG--------------DMVTAVG 221 (277)
T ss_dssp CC-----------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSH--------------HHHHHHH
T ss_pred CC-----------CCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccc--------------hhhhhhh
Confidence 32 23678999999999999999988 58999999999998864210 1111111
Q ss_pred HHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 279 DAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 279 ~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
.............. .... ..+.+++|+|+++++++.... ...++++++.+|.
T Consensus 222 ~~~~~~~~~~~~~~------~~~p-~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 274 (277)
T 3tsc_A 222 QAMETNPQLSHVLT------PFLP-DWVAEPEDIADTVCWLASDESRKVTAAQIPVDQGS 274 (277)
T ss_dssp HHHHTCGGGTTTTC------CSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred hcccccHHHHHHhh------hccC-CCCCCHHHHHHHHHHHhCccccCCcCCEEeeCCCc
Confidence 11111111000000 1111 247899999999999987543 2346899997774
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=219.06 Aligned_cols=223 Identities=15% Similarity=0.093 Sum_probs=161.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |+||||||+|+||++++++|+++|++|++++|+.. .+.+...++ +.++.++.+|++|++++++++++
T Consensus 24 ~l~g-k~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~---~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (266)
T 3grp_A 24 KLTG-RKALVTGATGGIGEAIARCFHAQGAIVGLHGTRED---KLKEIAADL---GKDVFVFSANLSDRKSIKQLAEVAE 96 (266)
T ss_dssp CCTT-CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHHH---CSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred ccCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHHHh---CCceEEEEeecCCHHHHHHHHHHHH
Confidence 4556 99999999999999999999999999999987433 333333333 35799999999999999988865
Q ss_pred ---CCCcEEEEcCcccCccCC----cCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+...... .++.+..+++|+.+ ++.+++.+++.+.++||++||...+...
T Consensus 97 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~--------- 167 (266)
T 3grp_A 97 REMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGN--------- 167 (266)
T ss_dssp HHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC---------------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCCC---------
Confidence 589999999998654332 23345578899999 6667777777778899999997765322
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
.+..+|+.||++.+.+++.++.+ .|+++++|+||.|.++... .+.+..........
T Consensus 168 --~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~---- 226 (266)
T 3grp_A 168 --PGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTD---------------KLNEKQKEAIMAMI---- 226 (266)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHH---------------TCCHHHHHHHHTTC----
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhh---------------ccCHHHHHHHHhcC----
Confidence 23678999999999999999887 5899999999999876311 11122222222222
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
....+.+++|+|+++++++.... ...++++++.+|.
T Consensus 227 ------------p~~r~~~~edvA~~v~~L~s~~~~~itG~~i~vdGG~ 263 (266)
T 3grp_A 227 ------------PMKRMGIGEEIAFATVYLASDEAAYLTGQTLHINGGM 263 (266)
T ss_dssp ------------TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred ------------CCCCCcCHHHHHHHHHHHhCccccCccCCEEEECCCe
Confidence 22357889999999999987543 2356899998774
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=220.15 Aligned_cols=232 Identities=15% Similarity=0.125 Sum_probs=165.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+||||++++++|+++|++|++++|+.. ...+...+. +.++.++.+|++|++++++++++
T Consensus 24 ~l~~-k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~---~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (277)
T 4dqx_A 24 DLNQ-RVCIVTGGGSGIGRATAELFAKNGAYVVVADVNED---AAVRVANEI---GSKAFGVRVDVSSAKDAESMVEKTT 96 (277)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH---HHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHH
Confidence 4556 99999999999999999999999999999987543 333333333 35789999999999999988865
Q ss_pred ---CCCcEEEEcCcccCccCCc----CChHHHHHHHHHHHHHHHH----HHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLVVLE----SMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~ll~----~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+....... ++.+..+++|+.++.++++ .+++.+.++||++||...+..
T Consensus 97 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 166 (277)
T 4dqx_A 97 AKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSA---------- 166 (277)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSC----------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcC----------
Confidence 4899999999986544322 3344567799999665554 445566789999999887643
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
..+..+|+.||++.+.+++.++.+ .|+++++|+||.|.++......... .-.........
T Consensus 167 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~---------~~~~~~~~~~~------- 229 (277)
T 4dqx_A 167 -IADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEA---------KDPAKLRSDFN------- 229 (277)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTC---------SCHHHHHHHHH-------
T ss_pred -CCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccc---------cchhHHHHHHH-------
Confidence 233678999999999999999887 5899999999999875200000000 00000111111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCccc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRS 340 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s 340 (413)
.......+.+++|+|+++++++.... ...++++++.+|...+
T Consensus 230 ---------~~~~~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~~ 272 (277)
T 4dqx_A 230 ---------ARAVMDRMGTAEEIAEAMLFLASDRSRFATGSILTVDGGSSIG 272 (277)
T ss_dssp ---------TTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSSSC
T ss_pred ---------hcCcccCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCchhhh
Confidence 11223457899999999999987543 2345899998886653
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=216.33 Aligned_cols=219 Identities=13% Similarity=0.121 Sum_probs=163.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+|+||++++++|+++|++|++++|+.... .+...++ ...+.++.+|++|++++++++++
T Consensus 5 l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~---~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~ 77 (260)
T 1nff_A 5 LTG-KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEG---KAMAAEL---ADAARYVHLDVTQPAQWKAAVDTAVT 77 (260)
T ss_dssp TTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHT---GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHh---hcCceEEEecCCCHHHHHHHHHHHHH
Confidence 456 8999999999999999999999999999998754322 2222222 13588899999999999988864
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHH----HHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNT----LVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~----~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..++.+..+++|+.++ +.+++.+++.+.++||++||...+...
T Consensus 78 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 147 (260)
T 1nff_A 78 AFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGT---------- 147 (260)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCC----------
Confidence 48999999999865432 2233456788999997 566777777778899999998876432
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.|+++... . .... +.
T Consensus 148 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~--~-----------------------~~~~-~~- 199 (260)
T 1nff_A 148 -VACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD--W-----------------------VPED-IF- 199 (260)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT--T-----------------------SCTT-CS-
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc--c-----------------------chhh-HH-
Confidence 23568999999999999999887 6999999999999987421 0 0000 00
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCcc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGR 339 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~ 339 (413)
......+++++|+|+++++++..... ..+++|++.+|...
T Consensus 200 ---------~~~~~~~~~~~dvA~~v~~l~s~~~~~~~G~~~~v~gG~~~ 240 (260)
T 1nff_A 200 ---------QTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVA 240 (260)
T ss_dssp ---------CCSSSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred ---------hCccCCCCCHHHHHHHHHHHhCccccCCcCCEEEECCCeec
Confidence 00112578999999999999875422 24579999887543
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-27 Score=214.40 Aligned_cols=228 Identities=16% Similarity=0.133 Sum_probs=162.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+||||++++++|+++|++|++++|+... ++.. .++ .. .++.+|++|++++++++++
T Consensus 4 l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~---~~~----~~-~~~~~D~~~~~~~~~~~~~~~~ 73 (256)
T 2d1y_A 4 FAG-KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVA---EAI----GG-AFFQVDLEDERERVRFVEEAAY 73 (256)
T ss_dssp TTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHH---HHH----TC-EEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHH---HHh----hC-CEEEeeCCCHHHHHHHHHHHHH
Confidence 345 899999999999999999999999999999986543 3222 222 14 7889999999999888765
Q ss_pred --CCCcEEEEcCcccCccCCc----CChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+....... ++.+..+++|+.++.++++++ ++.+.++||++||...+...
T Consensus 74 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~---------- 143 (256)
T 2d1y_A 74 ALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAE---------- 143 (256)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBC----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCC----------
Confidence 4899999999986543322 234567889999977765554 45567899999997765321
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHh-cccccee
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAAR-GIIAGLK 289 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~ 289 (413)
.+...|+.||++.+.+++.++.+ .|+++++++||.+.++. ......... .... ..
T Consensus 144 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~-------------------~~~~~~~~~~~~~~-~~ 202 (256)
T 2d1y_A 144 -QENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEA-------------------VLEAIALSPDPERT-RR 202 (256)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH-------------------HHHHHC---------CH
T ss_pred -CCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCch-------------------hhhccccccCCHHH-HH
Confidence 23678999999999999999887 58999999999998742 111100000 0000 00
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcccH
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSV 341 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~ 341 (413)
... .......+++++|+|+++++++.... ...+++|++.+|...++
T Consensus 203 ~~~------~~~~~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~v~gG~~~~~ 249 (256)
T 2d1y_A 203 DWE------DLHALRRLGKPEEVAEAVLFLASEKASFITGAILPVDGGMTASF 249 (256)
T ss_dssp HHH------TTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGBC
T ss_pred HHH------hcCCCCCCcCHHHHHHHHHHHhCchhcCCCCCEEEECCCccccc
Confidence 000 11223468999999999999987542 23457999988876544
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-28 Score=222.66 Aligned_cols=229 Identities=14% Similarity=0.099 Sum_probs=168.8
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+||||++++++|+++|++|++++|+....++..+.+.+ .+.++.++.+|++|++++++++++
T Consensus 23 ~l~g-k~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~ 98 (271)
T 4ibo_A 23 DLGG-RTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRN---VGHDAEAVAFDVTSESEIIEAFARLD 98 (271)
T ss_dssp CCTT-CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHH---TTCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 4567 9999999999999999999999999999987654433333333332 346799999999999999988865
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHH----HHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVV----LESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~l----l~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.++.++ ++.+++.+.++||++||...+..
T Consensus 99 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~---------- 168 (271)
T 4ibo_A 99 EQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELA---------- 168 (271)
T ss_dssp HHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSB----------
T ss_pred HHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCC----------
Confidence 47999999999865433 2334455788999997665 55566667789999999776532
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchH--HHHHHHHhccccc
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRIS--GACFDAARGIIAG 287 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 287 (413)
..+..+|+.||++.+.+++.++.+ .|+++++|+||.|.++... .+. +..........+
T Consensus 169 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~---------------~~~~~~~~~~~~~~~~p- 231 (271)
T 4ibo_A 169 -RATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQ---------------ALIDNPEFDAWVKARTP- 231 (271)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGH---------------HHHHCHHHHHHHHHHST-
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchh---------------hcccCHHHHHHHHhcCC-
Confidence 233678999999999999999888 6899999999999986311 111 112222222222
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCccc
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRS 340 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s 340 (413)
...+..++|+|+++++++.... ...++++++.+|...+
T Consensus 232 ---------------~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~~ 270 (271)
T 4ibo_A 232 ---------------AKRWGKPQELVGTAVFLSASASDYVNGQIIYVDGGMLSV 270 (271)
T ss_dssp ---------------TCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGGGB
T ss_pred ---------------CCCCcCHHHHHHHHHHHhCccccCCCCcEEEECCCeecc
Confidence 1246789999999999887543 2356899998886543
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=217.14 Aligned_cols=248 Identities=15% Similarity=0.106 Sum_probs=169.9
Q ss_pred CCCCCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC---------CCchhhhhhhhhcCCCCceEEEEccCCC
Q 015080 63 FSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR---------GNIGAVKVLQELFPEPGRLQFIYADLGD 133 (413)
Q Consensus 63 ~~~~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~---------~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 133 (413)
+...+.+ |++|||||+|+||.+++++|+++|++|++++|+.. +.+.+.+...++...+.++.++.+|++|
T Consensus 22 m~~~l~g-k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 100 (299)
T 3t7c_A 22 MAGKVEG-KVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRD 100 (299)
T ss_dssp CCCTTTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred cccccCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCC
Confidence 4345667 99999999999999999999999999999998632 2333333333333335689999999999
Q ss_pred HHHHHHHhhc-----CCCcEEEEcCcccCccC-----CcCChHHHHHHHHHHHHHHHHHH----HHcC-CCEEEEeccce
Q 015080 134 AKAVNKFFSE-----NAFDAVMHFAAVAYVGE-----STLDPLKYYHNITSNTLVVLESM----ARHG-VDTLIYSSTCA 198 (413)
Q Consensus 134 ~~~~~~~~~~-----~~~dvvi~~Ag~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~----~~~~-~~~iV~~SS~~ 198 (413)
++++++++++ .++|+||||||+..... ..++.+..+++|+.++.++++++ .+.+ .++||++||..
T Consensus 101 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~ 180 (299)
T 3t7c_A 101 FDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIG 180 (299)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChh
Confidence 9999988865 58999999999865432 22344567899999976666554 4433 67999999987
Q ss_pred ecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCC-CCCcccccccchH
Q 015080 199 TYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGE-APRPELREHGRIS 274 (413)
Q Consensus 199 ~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~-~~~~~~~~~~~~~ 274 (413)
.+... .+...|+.||++.+.+++.++.+ .||++++|+||.|.++........ ...+.. .....
T Consensus 181 ~~~~~-----------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~--~~~~~ 247 (299)
T 3t7c_A 181 GLRGA-----------ENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDL--ENPTV 247 (299)
T ss_dssp GTSCC-----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTS--SSCCH
T ss_pred hccCC-----------CCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhh--ccchh
Confidence 76432 23678999999999999999988 489999999999998753210000 000000 00000
Q ss_pred HHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 275 GACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 275 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
......... . .... ..+..++|+|+++++++.... -..++++++.+|..+
T Consensus 248 ~~~~~~~~~-~-------------~~~p-~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~l 298 (299)
T 3t7c_A 248 EDFQVASRQ-M-------------HVLP-IPYVEPADISNAILFLVSDDARYITGVSLPVDGGALL 298 (299)
T ss_dssp HHHHHHHHH-H-------------SSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred hHHHHHhhh-h-------------cccC-cCCCCHHHHHHHHHHHhCcccccCcCCEEeeCCCccc
Confidence 000000000 0 0001 357899999999999987543 234689999887643
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=218.81 Aligned_cols=237 Identities=17% Similarity=0.099 Sum_probs=165.0
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEec-CCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN-LSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
.+.+ |+||||||+||||++++++|+++|++|++++| +....++..+.+.. .+.++.++.+|++|++++++++++
T Consensus 18 ~~~~-k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~ 93 (274)
T 1ja9_A 18 PLAG-KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKK---LGAQGVAIQADISKPSEVVALFDKA 93 (274)
T ss_dssp TTTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHH
Confidence 4556 89999999999999999999999999999987 22222222222322 245788999999999999888864
Q ss_pred ----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHc---CCCEEEEeccceec-CCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARH---GVDTLIYSSTCATY-GEPEKMPITEE 211 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~iV~~SS~~~~-~~~~~~~~~e~ 211 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++.+. + ++||++||..++ ...
T Consensus 94 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~~~-------- 164 (274)
T 1ja9_A 94 VSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSSIAAVMTGI-------- 164 (274)
T ss_dssp HHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECCGGGTCCSC--------
T ss_pred HHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEEEcChHhccCCC--------
Confidence 48999999999764322 22334567899999999998888764 4 799999998876 322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCC-CCCCcccccccchHHHHHHHHhccccc
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLG-EAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
.+...|+.||++.|.+++.++.+ .|+++++++||.++++....... ..+... .+............
T Consensus 165 ---~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---- 234 (274)
T 1ja9_A 165 ---PNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGY---KGMPQEKIDEGLAN---- 234 (274)
T ss_dssp ---CSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCC---TTCCHHHHHHHHHH----
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhccccccccccc---ccCchHHHHHHHHh----
Confidence 23678999999999999999887 48999999999998863110000 000000 00000111111111
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
.....++++++|+|++++.++..... ..+++|++++|.
T Consensus 235 ------------~~~~~~~~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG~ 273 (274)
T 1ja9_A 235 ------------MNPLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGGG 273 (274)
T ss_dssp ------------TSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred ------------cCCCCCccCHHHHHHHHHHHhCcccccccCcEEEecCCc
Confidence 11234689999999999999975432 245799998763
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=216.65 Aligned_cols=231 Identities=16% Similarity=0.133 Sum_probs=157.7
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+... ..+..+++ +..+.++.+|++|.+++++++++
T Consensus 6 ~l~~-k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (261)
T 3n74_A 6 SLEG-KVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAG---AERVAGEI---GDAALAVAADISKEADVDAAVEAAL 78 (261)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHH---CTTEEEEECCTTSHHHHHHHHHHHH
T ss_pred cCCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHH---HHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHH
Confidence 4566 999999999999999999999999999999875433 33333333 35789999999999999988865
Q ss_pred ---CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHH----HHHHHHcC----CCEEEEeccceecCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVV----LESMARHG----VDTLIYSSTCATYGEPEKMP 207 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~l----l~~~~~~~----~~~iV~~SS~~~~~~~~~~~ 207 (413)
.++|+||||||+... .. ..++.+..+++|+.++.++ ++.+++.+ .++||++||...+..
T Consensus 79 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~----- 153 (261)
T 3n74_A 79 SKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRP----- 153 (261)
T ss_dssp HHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSC-----
T ss_pred HhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCC-----
Confidence 489999999998652 21 2233455788999995554 44455442 568999999776532
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcc
Q 015080 208 ITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGI 284 (413)
Q Consensus 208 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (413)
......|+.||++.+.+++.++.+ .|+++++++||.+.++......+ ...........
T Consensus 154 ------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-----------~~~~~~~~~~~-- 214 (261)
T 3n74_A 154 ------RPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMG-----------EDSEEIRKKFR-- 214 (261)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC------------------------------------
T ss_pred ------CCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcc-----------cCcHHHHHHHh--
Confidence 233678999999999999999988 68999999999999875321100 00000111111
Q ss_pred ccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcccH
Q 015080 285 IAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSV 341 (413)
Q Consensus 285 ~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~ 341 (413)
.......+++++|+|+++++++.... ...++++++.+|..++.
T Consensus 215 --------------~~~~~~~~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG~~~~~ 258 (261)
T 3n74_A 215 --------------DSIPMGRLLKPDDLAEAAAFLCSPQASMITGVALDVDGGRSIGG 258 (261)
T ss_dssp ----------------CTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTTC--
T ss_pred --------------hcCCcCCCcCHHHHHHHHHHHcCCcccCcCCcEEEecCCcccCC
Confidence 12223468999999999999986432 23568999998877654
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-27 Score=217.58 Aligned_cols=230 Identities=15% Similarity=0.127 Sum_probs=169.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |+||||||+||||++++++|+++|++|++++|+.....+ .....+...+.++.++.+|++|++++++++++
T Consensus 44 ~l~g-k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 120 (291)
T 3ijr_A 44 KLKG-KNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDAN--ETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETV 120 (291)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHH--HHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHH--HHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 4567 999999999999999999999999999999875432111 11111222346799999999999999888865
Q ss_pred ---CCCcEEEEcCcccCccC-----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE-----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++... ..++||++||...+....
T Consensus 121 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 191 (291)
T 3ijr_A 121 RQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNE--------- 191 (291)
T ss_dssp HHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCCT---------
T ss_pred HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCCC---------
Confidence 58999999999764322 23345668999999999999998764 356999999988774332
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
+...|+.||++.+.+++.++.+ .|+++++|+||.|.++.... .+.........
T Consensus 192 --~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~--------------~~~~~~~~~~~-------- 247 (291)
T 3ijr_A 192 --TLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPS--------------SFDEKKVSQFG-------- 247 (291)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHH--------------HSCHHHHHHTT--------
T ss_pred --CChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccc--------------cCCHHHHHHHH--------
Confidence 2678999999999999999888 48999999999999863100 00111111111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
.......+.+++|+|+++++++.... ...++++++.+|..+
T Consensus 248 --------~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 289 (291)
T 3ijr_A 248 --------SNVPMQRPGQPYELAPAYVYLASSDSSYVTGQMIHVNGGVIV 289 (291)
T ss_dssp --------TTSTTSSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESSSCCC
T ss_pred --------ccCCCCCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCCccc
Confidence 22233467899999999999987543 234689999877543
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=214.69 Aligned_cols=238 Identities=14% Similarity=0.146 Sum_probs=166.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+....++..+.+.+... +.++.++.+|++|++++++++++
T Consensus 11 l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~ 88 (267)
T 1iy8_A 11 FTD-RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP-DAEVLTTVADVSDEAQVEAYVTATTE 88 (267)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCT-TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CceEEEEEccCCCHHHHHHHHHHHHH
Confidence 456 8999999999999999999999999999998765433333333333211 25788999999999999988864
Q ss_pred --CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHH----HHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTL----VVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~----~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+... .. ..++.+..+++|+.++. .+++.|++.+.++||++||...+..
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 158 (267)
T 1iy8_A 89 RFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRG---------- 158 (267)
T ss_dssp HHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSB----------
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccC----------
Confidence 489999999997643 22 22334567889998854 5677777777889999999876532
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
..+..+|+.||++.+.+++.++.+ .|+++++|+||.|.++....... ... ..............
T Consensus 159 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-~~~------~~~~~~~~~~~~~~----- 225 (267)
T 1iy8_A 159 -IGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMK-QLD------PENPRKAAEEFIQV----- 225 (267)
T ss_dssp -CSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHH-HHC------TTCHHHHHHHHHTT-----
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhcccc-ccC------hhhhhhHHHHHhcc-----
Confidence 223678999999999999999877 58999999999998753100000 000 00000000011111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCccc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRS 340 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s 340 (413)
.....+.+++|+|+++++++.... ...++++++.+|...+
T Consensus 226 -----------~p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~~~ 266 (267)
T 1iy8_A 226 -----------NPSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQSAA 266 (267)
T ss_dssp -----------CTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTTTB
T ss_pred -----------CCCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCcccC
Confidence 112357899999999999987542 2345799998876543
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=217.51 Aligned_cols=223 Identities=15% Similarity=0.088 Sum_probs=161.5
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEE-ecCCCCCchhhhhhhhhcCCCCceEE-EEccCCCHHHHHHHhhc----
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIV-DNLSRGNIGAVKVLQELFPEPGRLQF-IYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dl~d~~~~~~~~~~---- 143 (413)
||+||||||+||||++++++|+++|++|+++ +|+..+.++..+.+.. .+.++.. +.+|++|.+++++++++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARR---RGSPLVAVLGANLLEAEAATALVHQAAEV 77 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHH---TTCSCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh---cCCceEEEEeccCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999998 6543322222222322 2345666 89999999999888754
Q ss_pred -CCCcEEEEcCcccCccC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||+..... ..++.+..+++|+.+ ++.+++.+++.+.++||++||...+...
T Consensus 78 ~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------- 146 (245)
T 2ph3_A 78 LGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGN----------- 146 (245)
T ss_dssp HTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC-----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCC-----------
Confidence 58999999999764322 223445678899999 6677777777788899999997654321
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
.+...|+.||++.+.+++.++.+ .|++++++|||.++++... .+.+..........+
T Consensus 147 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~----- 206 (245)
T 2ph3_A 147 PGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTE---------------RLPQEVKEAYLKQIP----- 206 (245)
T ss_dssp SSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH---------------TSCHHHHHHHHHTCT-----
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchh---------------hcCHHHHHHHHhcCC-----
Confidence 22578999999999999999877 4899999999999986421 111112222221111
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...+++++|+|++++.++.... ...+++|++.+|.
T Consensus 207 -----------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 242 (245)
T 2ph3_A 207 -----------AGRFGRPEEVAEAVAFLVSEKAGYITGQTLCVDGGL 242 (245)
T ss_dssp -----------TCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred -----------CCCCcCHHHHHHHHHHHhCcccccccCCEEEECCCC
Confidence 1357899999999999987542 2235799997764
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=215.59 Aligned_cols=227 Identities=15% Similarity=0.107 Sum_probs=165.8
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEec-CCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN-LSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
..+ |+||||||+||||++++++|+++|++|+++++ +........+.+.+ .+.++.++.+|++|.+++++++++
T Consensus 11 ~~~-k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~ 86 (256)
T 3ezl_A 11 MSQ-RIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKA---LGFDFYASEGNVGDWDSTKQAFDKVK 86 (256)
T ss_dssp --C-EEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHH---TTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh---cCCeeEEEecCCCCHHHHHHHHHHHH
Confidence 445 99999999999999999999999999999884 33333333333333 246789999999999999988865
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHH----HHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNT----LVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~----~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.++ +.+++.+++.+.++||++||...+..
T Consensus 87 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 156 (256)
T 3ezl_A 87 AEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKG---------- 156 (256)
T ss_dssp HHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGS----------
T ss_pred HhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccC----------
Confidence 48999999999865432 2234456888999994 44566667777889999999776532
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
..+...|+.||++.+.+++.++.+ .|+++++++||.|.++... .+.+.....+....+
T Consensus 157 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~~--- 217 (256)
T 3ezl_A 157 -QFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVK---------------AIRPDVLEKIVATIP--- 217 (256)
T ss_dssp -CSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH---------------TSCHHHHHHHHHHST---
T ss_pred -CCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCcccc---------------ccCHHHHHHHHhcCC---
Confidence 233678999999999999999887 6899999999999876321 112222333222222
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCcc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKGR 339 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~~ 339 (413)
...+.+++|+|+++++++... ....++++++.+|..+
T Consensus 218 -------------~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG~~~ 255 (256)
T 3ezl_A 218 -------------VRRLGSPDEIGSIVAWLASEESGFSTGADFSLNGGLHM 255 (256)
T ss_dssp -------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCC
T ss_pred -------------CCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCCEeC
Confidence 124678999999999988643 2335689999887543
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-26 Score=208.53 Aligned_cols=233 Identities=13% Similarity=0.115 Sum_probs=166.1
Q ss_pred CCCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 65 QHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 65 ~~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+++++ |++|||||+++||+++++.|+++|++|++++|+.... +..+.+.+. +.++.++.+|++|++++++++++
T Consensus 3 ~~L~g-KvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~-~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~v~~~ 77 (258)
T 4gkb_A 3 LNLQD-KVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDG-AFLDALAQR---QPRATYLPVELQDDAQCRDAVAQT 77 (258)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCH-HHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccH-HHHHHHHhc---CCCEEEEEeecCCHHHHHHHHHHH
Confidence 35778 9999999999999999999999999999999866543 233333333 46789999999999999888766
Q ss_pred ----CCCcEEEEcCcccCccCCc---CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGEST---LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~~~---~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
+++|++|||||+......+ ++.+..+++|+.+ ++.+++.|++.+ ++||++||...+...+
T Consensus 78 ~~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G~IVnisS~~~~~~~~-------- 148 (258)
T 4gkb_A 78 IATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATR-GAIVNISSKTAVTGQG-------- 148 (258)
T ss_dssp HHHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTHHHHCCS--------
T ss_pred HHHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEeehhhccCCC--------
Confidence 7899999999986443322 3344567889888 555677776655 7999999987653322
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
...+|+.||++.+.+++.++.| +||++++|.||.|-.|........... ............|
T Consensus 149 ---~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~---------~~~~~~~~~~~~p--- 213 (258)
T 4gkb_A 149 ---NTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFED---------PEAKLAEIAAKVP--- 213 (258)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC--------------------CHHHHHHTTCT---
T ss_pred ---CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccC---------hHHHHHHHHhcCC---
Confidence 2678999999999999999988 789999999999987753211100000 0011112222111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
+ + ..+...+|+|+++++++.... --.|+++.+.+|.+
T Consensus 214 l---------g---~R~g~peeiA~~v~fLaS~~a~~iTG~~i~VDGG~T 251 (258)
T 4gkb_A 214 L---------G---RRFTTPDEIADTAVFLLSPRASHTTGEWLFVDGGYT 251 (258)
T ss_dssp T---------T---TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred C---------C---CCCcCHHHHHHHHHHHhCchhcCccCCeEEECCCcc
Confidence 1 0 245678999999999886433 23568999977753
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=203.87 Aligned_cols=202 Identities=16% Similarity=0.215 Sum_probs=155.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|+||||||+||++++++|+++|++|++++|+..+.... ...++.++.+|++|++++.+++ .++|+||
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~~D~~~~~~~~~~~--~~~d~vi 72 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE---------GPRPAHVVVGDVLQAADVDKTV--AGQDAVI 72 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS---------SCCCSEEEESCTTSHHHHHHHH--TTCSEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc---------cCCceEEEEecCCCHHHHHHHH--cCCCEEE
Confidence 7899999999999999999999999999999864432211 0257899999999999999999 6799999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
||||..... ++ .++|+.++.++++++++.++++||++||..+|+..... +.+...|+.+|.++|.+
T Consensus 73 ~~a~~~~~~----~~---~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-------~~~~~~y~~~K~~~e~~ 138 (206)
T 1hdo_A 73 VLLGTRNDL----SP---TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKV-------PPRLQAVTDDHIRMHKV 138 (206)
T ss_dssp ECCCCTTCC----SC---CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCS-------CGGGHHHHHHHHHHHHH
T ss_pred ECccCCCCC----Cc---cchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCcccc-------cccchhHHHHHHHHHHH
Confidence 999975431 11 24889999999999999999999999999998754321 11567899999999999
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHH
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~ 310 (413)
++. .+++++++||+.+ ++..... .+. ..+.+ .+. .++++++
T Consensus 139 ~~~----~~i~~~~lrp~~~-~~~~~~~-------------~~~-------------~~~~~------~~~--~~~i~~~ 179 (206)
T 1hdo_A 139 LRE----SGLKYVAVMPPHI-GDQPLTG-------------AYT-------------VTLDG------RGP--SRVISKH 179 (206)
T ss_dssp HHH----TCSEEEEECCSEE-ECCCCCS-------------CCE-------------EESSS------CSS--CSEEEHH
T ss_pred HHh----CCCCEEEEeCCcc-cCCCCCc-------------ceE-------------ecccC------CCC--CCccCHH
Confidence 864 7899999999997 4432100 100 00001 111 4899999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEecCCC
Q 015080 311 DLVDAHVKALERAQPKKVGIYNVGTGK 337 (413)
Q Consensus 311 Dva~a~~~~~~~~~~~~~~~yni~~~~ 337 (413)
|+|++++.+++++.. .+++|++++++
T Consensus 180 Dva~~~~~~~~~~~~-~g~~~~i~~g~ 205 (206)
T 1hdo_A 180 DLGHFMLRCLTTDEY-DGHSTYPSHQY 205 (206)
T ss_dssp HHHHHHHHTTSCSTT-TTCEEEEECCC
T ss_pred HHHHHHHHHhcCccc-cccceeeeccc
Confidence 999999999987543 35799998774
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-27 Score=215.20 Aligned_cols=223 Identities=17% Similarity=0.067 Sum_probs=160.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+||||++++++|+++|++|++++|+.. ...+...++ ..++.++.+|++|++++++++++
T Consensus 10 l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~---~~~~~~~~~---~~~~~~~~~D~~d~~~v~~~~~~~~~ 82 (263)
T 3ak4_A 10 LSG-RKAIVTGGSKGIGAAIARALDKAGATVAIADLDVM---AAQAVVAGL---ENGGFAVEVDVTKRASVDAAMQKAID 82 (263)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHTC---TTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHHHH---hcCCeEEEEeCCCHHHHHHHHHHHHH
Confidence 446 89999999999999999999999999999987542 222222222 12678899999999999988864
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcC-CCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHG-VDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++ .+.+ .++||++||...+..
T Consensus 83 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 152 (263)
T 3ak4_A 83 ALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVG---------- 152 (263)
T ss_dssp HHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSC----------
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccC----------
Confidence 48999999999765432 22334567889999976665554 4445 689999999876532
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchH-----------HHHH
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRIS-----------GACF 278 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 278 (413)
..+..+|+.||++.+.+++.++.+ .|+++++|+||.|+++... ... +...
T Consensus 153 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~~~~ 216 (263)
T 3ak4_A 153 -APLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQE---------------REIIWEAELRGMTPEAVR 216 (263)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHH---------------HHHHHHHHHHTSCHHHHH
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhh---------------hhccccccccccCcHHHH
Confidence 223678999999999999999887 5999999999999986310 000 0111
Q ss_pred HHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 279 DAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 279 ~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
..... ......+++++|+|+++++++.... ...+++|++.+|..
T Consensus 217 ~~~~~----------------~~p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 261 (263)
T 3ak4_A 217 AEYVS----------------LTPLGRIEEPEDVADVVVFLASDAARFMTGQGINVTGGVR 261 (263)
T ss_dssp HHHHH----------------TCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred HHHHh----------------cCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECcCEe
Confidence 11111 1112358899999999999987542 23457999988754
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-27 Score=216.65 Aligned_cols=238 Identities=13% Similarity=0.041 Sum_probs=165.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++.+ |++|||||+|+||++++++|+++|++|++++|+....++.. .++...+.++.++.+|++|++++++++++
T Consensus 21 m~~~-k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~---~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (279)
T 3sju_A 21 MSRP-QTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAV---DGLRAAGHDVDGSSCDVTSTDEVHAAVAAAV 96 (279)
T ss_dssp -----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH---HHHHTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---HHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 3445 89999999999999999999999999999987544333333 33333356899999999999999888765
Q ss_pred ---CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHH------HcCCCEEEEeccceecCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMA------RHGVDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~------~~~~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
.++|+||||||+...... .++.+..+++|+.++.++++++. +.+.++||++||...+...
T Consensus 97 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~------- 169 (279)
T 3sju_A 97 ERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGV------- 169 (279)
T ss_dssp HHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCC-------
Confidence 589999999998654332 22344567899999777776654 4567899999998776332
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
.+..+|+.||++.+.+++.++.+ .|+++++|+||.|.++........... ..+...+.........
T Consensus 170 ----~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--- 238 (279)
T 3sju_A 170 ----MYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYAR----HWGVTEQEVHERFNAK--- 238 (279)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCS----SSCCCHHHHHHHHHTT---
T ss_pred ----CCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhh----cccCChHHHHHHHHhc---
Confidence 23678999999999999999988 689999999999987531000000000 0000111222222221
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
.....+.+++|+|+++++++.... ...++++++.+|..
T Consensus 239 -------------~p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~ 277 (279)
T 3sju_A 239 -------------IPLGRYSTPEEVAGLVGYLVTDAAASITAQALNVCGGLG 277 (279)
T ss_dssp -------------CTTSSCBCHHHHHHHHHHHTSSGGGGCCSCEEEESTTCC
T ss_pred -------------CCCCCCCCHHHHHHHHHHHhCccccCcCCcEEEECCCcc
Confidence 122357899999999999887432 23457999987743
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=212.91 Aligned_cols=226 Identities=15% Similarity=0.102 Sum_probs=162.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCce-EEEEccCCCHHHHHHHhhc--
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRL-QFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~d~~~~~~~~~~-- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+..+ ..+..+++ +.++ .++.+|++|.++++++++.
T Consensus 9 ~~~-k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (254)
T 2wsb_A 9 LDG-ACAAVTGAGSGIGLEICRAFAASGARLILIDREAAA---LDRAAQEL---GAAVAARIVADVTDAEAMTAAAAEAE 81 (254)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHH---GGGEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHh---cccceeEEEEecCCHHHHHHHHHHHH
Confidence 456 899999999999999999999999999999875432 22222222 2356 8899999999999988764
Q ss_pred --CCCcEEEEcCcccCccCCc----CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+....... ++.+..+++|+.+ ++.+++.+++.+.++||++||...+... +
T Consensus 82 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------~ 152 (254)
T 2wsb_A 82 AVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVN---------R 152 (254)
T ss_dssp HHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---------S
T ss_pred hhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCC---------C
Confidence 5899999999986543322 2234578899999 4555566667778899999998776432 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
..+..+|+.||++.+.+++.++.+ .|++++++|||.++++..... ...+..........+
T Consensus 153 ~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~-------------~~~~~~~~~~~~~~~---- 215 (254)
T 2wsb_A 153 PQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKM-------------RERPELFETWLDMTP---- 215 (254)
T ss_dssp SSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHH-------------HTCHHHHHHHHHTST----
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhcc-------------ccChHHHHHHHhcCC----
Confidence 223478999999999999999887 489999999999998631100 000111222221111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...+++++|+|++++.++.... ...++++++.+|.
T Consensus 216 ------------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 251 (254)
T 2wsb_A 216 ------------MGRCGEPSEIAAAALFLASPAASYVTGAILAVDGGY 251 (254)
T ss_dssp ------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ------------CCCCCCHHHHHHHHHHHhCcccccccCCEEEECCCE
Confidence 1357899999999999987532 2345799997764
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-27 Score=216.99 Aligned_cols=226 Identities=12% Similarity=0.060 Sum_probs=162.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |+||||||+|+||++++++|+++|++|++++|+..+.+++.+.+. ..+.++.++.+|++|.+++++++++
T Consensus 41 ~l~~-k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 116 (285)
T 2c07_A 41 CGEN-KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK---SFGYESSGYAGDVSKKEEISEVINKIL 116 (285)
T ss_dssp CCSS-CEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHH---TTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCC-CEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHH---hcCCceeEEECCCCCHHHHHHHHHHHH
Confidence 3456 899999999999999999999999999998765433222223332 2245789999999999999988764
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.++.+ +++.+++.+.++||++||...+...
T Consensus 117 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~--------- 187 (285)
T 2c07_A 117 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGN--------- 187 (285)
T ss_dssp HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC---------
T ss_pred HhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCC---------
Confidence 57999999999864432 223445678899999544 5555556677899999998765322
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
.+...|+.||++.+.+++.++.+ .|+++++++||.+.++... .+.+..........+
T Consensus 188 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~--- 247 (285)
T 2c07_A 188 --VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTD---------------KISEQIKKNIISNIP--- 247 (285)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC--------------------CCHHHHHHHHTTCT---
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchh---------------hcCHHHHHHHHhhCC---
Confidence 23678999999999999999877 5899999999999987421 111222222222111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
...+++++|+|++++.++..... ..+++|++.+|.
T Consensus 248 -------------~~~~~~~~dvA~~~~~l~~~~~~~~~G~~i~v~gG~ 283 (285)
T 2c07_A 248 -------------AGRMGTPEEVANLACFLSSDKSGYINGRVFVIDGGL 283 (285)
T ss_dssp -------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred -------------CCCCCCHHHHHHHHHHHhCCCcCCCCCCEEEeCCCc
Confidence 12478999999999999875432 345799998764
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=219.58 Aligned_cols=233 Identities=14% Similarity=0.040 Sum_probs=164.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+.. ...+...++ +.++.++.+|++|++++++++++
T Consensus 26 ~l~g-k~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~---~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~ 98 (277)
T 3gvc_A 26 DLAG-KVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGD---AADAAATKI---GCGAAACRVDVSDEQQIIAMVDACV 98 (277)
T ss_dssp -CTT-CEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHH---HHHHHHHHH---CSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHHHc---CCcceEEEecCCCHHHHHHHHHHHH
Confidence 3556 99999999999999999999999999999987543 233333333 35789999999999999888765
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHH----HHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVV----LESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~l----l~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.++.++ ++.+++.+.++||++||...+..
T Consensus 99 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~---------- 168 (277)
T 3gvc_A 99 AAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVA---------- 168 (277)
T ss_dssp HHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC----------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccC----------
Confidence 58999999999865433 2334456788999995554 45555667789999999776532
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
..+..+|+.||++.+.+++.++.+ .|+++++|+||.|.+|.. ..... .......
T Consensus 169 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~-------------------~~~~~---~~~~~~~ 225 (277)
T 3gvc_A 169 -VGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQ-------------------QTAMA---MFDGALG 225 (277)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH-------------------HHHHT---CC-----
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchH-------------------HHhhh---cchhhHH
Confidence 233678999999999999999887 689999999999998631 11000 0000000
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCccc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRS 340 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s 340 (413)
....... .......+.+++|+|+++++++.... ...++++++.+|...+
T Consensus 226 ~~~~~~~--~~~~~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~~~ 275 (277)
T 3gvc_A 226 AGGARSM--IARLQGRMAAPEEMAGIVVFLLSDDASMITGTTQIADGGTIAA 275 (277)
T ss_dssp -CCHHHH--HHHHHSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGS
T ss_pred HHhhhhh--hhccccCCCCHHHHHHHHHHHcCCccCCccCcEEEECCcchhc
Confidence 0000000 00112357899999999999987542 2346899998886554
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-27 Score=215.08 Aligned_cols=222 Identities=17% Similarity=0.106 Sum_probs=163.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+.. ...+...++ +.++.++.+|++|++++++++++
T Consensus 3 l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~---~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (254)
T 1hdc_A 3 LSG-KTVIITGGARGLGAEAARQAVAAGARVVLADVLDE---EGAATAREL---GDAARYQHLDVTIEEDWQRVVAYARE 75 (254)
T ss_dssp CCC-SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHHHh---CCceeEEEecCCCHHHHHHHHHHHHH
Confidence 345 89999999999999999999999999999987542 222222222 24688999999999999888764
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHH----HHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTL----VVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~----~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..++.+..+++|+.++. .+++.|++.+.++||++||...+...
T Consensus 76 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 145 (254)
T 1hdc_A 76 EFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGL---------- 145 (254)
T ss_dssp HHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCC----------
Confidence 48999999999764322 22344567889999865 67788887778899999998776422
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc-ccee
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII-AGLK 289 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~ 289 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.++++. ... ..... ..+
T Consensus 146 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~-------------------~~~----~~~~~~~~~- 200 (254)
T 1hdc_A 146 -ALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM-------------------TAE----TGIRQGEGN- 200 (254)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH-------------------HHH----HTCCCSTTS-
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCcc-------------------ccc----cchhHHHHH-
Confidence 23678999999999999999887 58999999999999852 111 10000 000
Q ss_pred EecccccCCCCceeeecc-cHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 290 VKGTDYSTADGTCVRDYI-DVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i-~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
. .......+. +++|+|+++++++.... ...++++++.+|..
T Consensus 201 -~-------~~~p~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 243 (254)
T 1hdc_A 201 -Y-------PNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGGWT 243 (254)
T ss_dssp -C-------TTSTTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred -H-------hcCCCCCCCCCHHHHHHHHHHHhCchhcCCCCCEEEECCCcc
Confidence 0 111122467 99999999999987542 23457999987754
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=217.12 Aligned_cols=228 Identities=15% Similarity=0.072 Sum_probs=166.5
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |++|||||+++||+++|+.|+++|++|++.+|+....+++.+.+ ...+.++.++.+|++|++++++++++
T Consensus 6 ~L~g-KvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l---~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (255)
T 4g81_D 6 DLTG-KTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTL---TRKGYDAHGVAFDVTDELAIEAAFSKLD 81 (255)
T ss_dssp CCTT-CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHH---HHTTCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH---HhcCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 4678 99999999999999999999999999999887544333333333 33356899999999999999888866
Q ss_pred ---CCCcEEEEcCcccCccCC----cCChHHHHHHHHHH----HHHHHHHHHHc-CCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSN----TLVVLESMARH-GVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~----~~~ll~~~~~~-~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
+++|++|||||+...... .++.+..+++|+.+ ++.+++.|.++ +.++||++||...+...+
T Consensus 82 ~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~------- 154 (255)
T 4g81_D 82 AEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARP------- 154 (255)
T ss_dssp HTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCT-------
T ss_pred HHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCC-------
Confidence 689999999998765443 33445578899988 55667777654 568999999987654322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
...+|+.||++...+++.++.| +||++++|.||.|..|..... .--+.....+....| +
T Consensus 155 ----~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~-------------~~~~~~~~~~~~~~P-l 216 (255)
T 4g81_D 155 ----TVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTAL-------------IEDKQFDSWVKSSTP-S 216 (255)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHH-------------HTCHHHHHHHHHHST-T
T ss_pred ----CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcc-------------cCCHHHHHHHHhCCC-C
Confidence 2678999999999999999988 789999999999987531100 000122222222222 1
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
..+...+|+|+++++++.... --.++++.+.+|.
T Consensus 217 ---------------~R~g~pediA~~v~fL~S~~a~~iTG~~i~VDGG~ 251 (255)
T 4g81_D 217 ---------------QRWGRPEELIGTAIFLSSKASDYINGQIIYVDGGW 251 (255)
T ss_dssp ---------------CSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ---------------CCCcCHHHHHHHHHHHhCchhCCCcCCEEEECCCe
Confidence 135677999999999886433 2356799887663
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=225.69 Aligned_cols=234 Identities=13% Similarity=0.148 Sum_probs=174.2
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC-CCC-chhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS-RGN-IGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~-~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
||+|+||||||+||++++++|++.|++|++++|+. ... ....+.+..+. ..+++++.+|++|++++.+++ .++|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~--~~~v~~v~~D~~d~~~l~~a~--~~~d 79 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFR--SMGVTIIEGEMEEHEKMVSVL--KQVD 79 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHH--HTTCEEEECCTTCHHHHHHHH--TTCS
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhh--cCCcEEEEecCCCHHHHHHHH--cCCC
Confidence 47899999999999999999999999999999865 211 11222222221 146899999999999999999 6799
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccceecCCCCCCCCCCCCCCCC-CChhHHHHH
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VDTLIYSSTCATYGEPEKMPITEETPQAP-INPYGKAKK 225 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~~-~~~Y~~sK~ 225 (413)
+|||||+... +.+++++++++++.+ +++||+ | +||.. .+|..+..| .+.| .+|.
T Consensus 80 ~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~----~~~~~~~~p~~~~y-~sK~ 135 (321)
T 3c1o_A 80 IVISALPFPM---------------ISSQIHIINAIKAAGNIKRFLP-S---DFGCE----EDRIKPLPPFESVL-EKKR 135 (321)
T ss_dssp EEEECCCGGG---------------SGGGHHHHHHHHHHCCCCEEEC-S---CCSSC----GGGCCCCHHHHHHH-HHHH
T ss_pred EEEECCCccc---------------hhhHHHHHHHHHHhCCccEEec-c---ccccC----ccccccCCCcchHH-HHHH
Confidence 9999998642 456789999999998 999983 3 34422 122233333 4579 9999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHH---HhccccceeEecccccCCCCce
Q 015080 226 MAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDA---ARGIIAGLKVKGTDYSTADGTC 302 (413)
Q Consensus 226 ~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~g~~~~~~~~~~ 302 (413)
++|.+++. .|+++++|||+.++++ +.+.+... ...... +.+.+ +++.
T Consensus 136 ~~e~~~~~----~~~~~~~lrp~~~~~~-------------------~~~~~~~~~~~~~~~~~-~~~~~------~~~~ 185 (321)
T 3c1o_A 136 IIRRAIEA----AALPYTYVSANCFGAY-------------------FVNYLLHPSPHPNRNDD-IVIYG------TGET 185 (321)
T ss_dssp HHHHHHHH----HTCCBEEEECCEEHHH-------------------HHHHHHCCCSSCCTTSC-EEEET------TSCC
T ss_pred HHHHHHHH----cCCCeEEEEeceeccc-------------------cccccccccccccccCc-eEEec------CCCc
Confidence 99998875 6899999999988873 22322211 111222 55555 7788
Q ss_pred eeecccHHHHHHHHHHHHHhcCCCCccEEEecC-CCcccHHHHHHHHHHHcCCCceeEecC
Q 015080 303 VRDYIDVNDLVDAHVKALERAQPKKVGIYNVGT-GKGRSVKEFVEACKKATSANIKVIYEP 362 (413)
Q Consensus 303 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~ 362 (413)
.+++++++|+|++++.++..+... +++|++.+ ++.+|+.|+++.+.+.+|.+.++...+
T Consensus 186 ~~~~i~~~Dva~~~~~~l~~~~~~-g~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~~~ 245 (321)
T 3c1o_A 186 KFVLNYEEDIAKYTIKVACDPRCC-NRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMP 245 (321)
T ss_dssp EEEEECHHHHHHHHHHHHHCGGGT-TEEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEEEC
T ss_pred ceeEeeHHHHHHHHHHHHhCcccc-CeEEEEeCCCCcccHHHHHHHHHHHcCCcceeeeCC
Confidence 899999999999999999865432 36888875 478999999999999999988776554
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=216.52 Aligned_cols=226 Identities=14% Similarity=0.102 Sum_probs=164.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC-CCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL-SRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
+.+ |+||||||+||||++++++|+++|++|++++|+ ....+.+.+.+... +.++.++.+|++|++++++++++
T Consensus 5 l~~-k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (258)
T 3afn_B 5 LKG-KRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRAD---GGDAAFFAADLATSEACQQLVDEFV 80 (258)
T ss_dssp GTT-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHT---TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhc---CCceEEEECCCCCHHHHHHHHHHHH
Confidence 345 899999999999999999999999999999986 44333333333332 35789999999999999988864
Q ss_pred ---CCCcEEEEcCcc-cCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcC--C---CEEEEeccceecCCCCCC
Q 015080 144 ---NAFDAVMHFAAV-AYVGE----STLDPLKYYHNITSNTLVVLESM----ARHG--V---DTLIYSSTCATYGEPEKM 206 (413)
Q Consensus 144 ---~~~dvvi~~Ag~-~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~--~---~~iV~~SS~~~~~~~~~~ 206 (413)
.++|+||||||+ ..... ..+..+..+++|+.++.++++++ .+.+ . ++||++||...+..
T Consensus 81 ~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~---- 156 (258)
T 3afn_B 81 AKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG---- 156 (258)
T ss_dssp HHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC----
T ss_pred HHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC----
Confidence 389999999997 33222 12234557889999977766644 3333 2 79999999876641
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhc
Q 015080 207 PITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARG 283 (413)
Q Consensus 207 ~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (413)
+..+..+|+.||++.+.+++.++.+ .|++++++|||.++++... ...+.+...+..
T Consensus 157 ------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~ 215 (258)
T 3afn_B 157 ------GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHA---------------DKTQDVRDRISN 215 (258)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGT---------------TCCHHHHHHHHT
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccc---------------ccCHHHHHHHhc
Confidence 1223678999999999999998877 4899999999999997532 111222333332
Q ss_pred cccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC--CCCccEEEecCCC
Q 015080 284 IIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ--PKKVGIYNVGTGK 337 (413)
Q Consensus 284 ~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~--~~~~~~yni~~~~ 337 (413)
..+ ...+++++|+|++++.++.... ...+++|++.+|.
T Consensus 216 ~~~----------------~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg~ 255 (258)
T 3afn_B 216 GIP----------------MGRFGTAEEMAPAFLFFASHLASGYITGQVLDINGGQ 255 (258)
T ss_dssp TCT----------------TCSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTTS
T ss_pred cCC----------------CCcCCCHHHHHHHHHHHhCcchhccccCCEEeECCCc
Confidence 221 2368999999999999987542 2234799998765
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-27 Score=219.64 Aligned_cols=250 Identities=12% Similarity=0.037 Sum_probs=169.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+....+++.+.+.+......++.++.+|++|++++++++++
T Consensus 24 l~~-k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 102 (297)
T 1xhl_A 24 FSG-KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 102 (297)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 446 8999999999999999999999999999998764433333333333211011789999999999999888764
Q ss_pred --CCCcEEEEcCcccCccC------CcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE------STLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~------~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+..... ..++.+..+++|+.++.+++++ +++.+ ++||++||...+...
T Consensus 103 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~-------- 173 (297)
T 1xhl_A 103 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQA-------- 173 (297)
T ss_dssp HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSC--------
T ss_pred hcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCC--------
Confidence 48999999999764322 2233456788999996665554 44455 899999998776432
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
..+...|+.||++.+.+++.++.+ .|+++++|+||.|.++...... .+.. .+.-..........
T Consensus 174 --~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~----~~~~--~~~~~~~~~~~~~~----- 240 (297)
T 1xhl_A 174 --HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMG----LPET--ASDKLYSFIGSRKE----- 240 (297)
T ss_dssp --CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTT----CCHH--HHHHHHHHHHHCTT-----
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccc----cccc--cccchHHHHHHHHh-----
Confidence 023678999999999999999876 6899999999999986311000 0000 00000001111111
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhc--CCCCccEEEecCCCcccHHHHHHHHHH
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA--QPKKVGIYNVGTGKGRSVKEFVEACKK 350 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~--~~~~~~~yni~~~~~~s~~e~~~~i~~ 350 (413)
......+..++|+|+++++++... ....++++++.+|......+.+..+.+
T Consensus 241 -----------~~p~~r~~~pedvA~~v~~l~s~~~~~~itG~~i~vdGG~~~~~~~~~~~~~~ 293 (297)
T 1xhl_A 241 -----------CIPVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGSTLVMGMQTHDLMS 293 (297)
T ss_dssp -----------TCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCCGGGGSCHHH
T ss_pred -----------cCCCCCCcCHHHHHHHHHHHhCCcccCCccCcEEEECCCccccccccccchhh
Confidence 111235789999999999998753 223457999988877665554444433
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=225.10 Aligned_cols=237 Identities=15% Similarity=0.213 Sum_probs=174.4
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCC--chhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN--IGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
||+|+||||||+||++++++|++.|++|++++|+.... ....+.++.+. ..+++++.+|++|++++.+++ .++|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d~~~l~~~~--~~~d 79 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK--ASGANIVHGSIDDHASLVEAV--KNVD 79 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH--TTTCEEECCCTTCHHHHHHHH--HTCS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHH--hCCCEEEEeccCCHHHHHHHH--cCCC
Confidence 47899999999999999999999999999998865432 22222222221 257899999999999999999 5799
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccceecCCCCCCCCCCCCCCCC-CChhHHHHH
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VDTLIYSSTCATYGEPEKMPITEETPQAP-INPYGKAKK 225 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~~-~~~Y~~sK~ 225 (413)
+|||+|+... +.++.++++++++.+ +++||+ |+ ||.. .+|..+..| ...| .+|.
T Consensus 80 ~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~----~~~~~~~~p~~~~y-~sK~ 135 (308)
T 1qyc_A 80 VVISTVGSLQ---------------IESQVNIIKAIKEVGTVKRFFP-SE---FGND----VDNVHAVEPAKSVF-EVKA 135 (308)
T ss_dssp EEEECCCGGG---------------SGGGHHHHHHHHHHCCCSEEEC-SC---CSSC----TTSCCCCTTHHHHH-HHHH
T ss_pred EEEECCcchh---------------hhhHHHHHHHHHhcCCCceEee-cc---cccC----ccccccCCcchhHH-HHHH
Confidence 9999998642 345788999999998 999984 43 4422 223333334 4568 9999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeee
Q 015080 226 MAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRD 305 (413)
Q Consensus 226 ~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 305 (413)
++|.++++ .|++++++||+.++|+.... +.... ........ +.+.+ +++..++
T Consensus 136 ~~e~~~~~----~~~~~~~~r~~~~~~~~~~~---------------~~~~~-~~~~~~~~-~~~~~------~~~~~~~ 188 (308)
T 1qyc_A 136 KVRRAIEA----EGIPYTYVSSNCFAGYFLRS---------------LAQAG-LTAPPRDK-VVILG------DGNARVV 188 (308)
T ss_dssp HHHHHHHH----HTCCBEEEECCEEHHHHTTT---------------TTCTT-CSSCCSSE-EEEET------TSCCEEE
T ss_pred HHHHHHHh----cCCCeEEEEeceeccccccc---------------ccccc-ccCCCCCc-eEEec------CCCceEE
Confidence 99998876 58999999999998853210 00000 00011122 55555 7788899
Q ss_pred cccHHHHHHHHHHHHHhcCCCCccEEEecCC-CcccHHHHHHHHHHHcCCCceeEecC
Q 015080 306 YIDVNDLVDAHVKALERAQPKKVGIYNVGTG-KGRSVKEFVEACKKATSANIKVIYEP 362 (413)
Q Consensus 306 ~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~-~~~s~~e~~~~i~~~~g~~~~~~~~~ 362 (413)
|++++|+|++++.++..+... +++|++.++ +.+|+.|+++.+.+.+|++.++...+
T Consensus 189 ~i~~~Dva~~~~~~l~~~~~~-~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 245 (308)
T 1qyc_A 189 FVKEEDIGTFTIKAVDDPRTL-NKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 245 (308)
T ss_dssp EECHHHHHHHHHTTSSCGGGT-TEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred EecHHHHHHHHHHHHhCcccc-CeEEEEeCCCCccCHHHHHHHHHHHhCCCCceEeCC
Confidence 999999999999999865432 368888654 68999999999999999998876654
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=213.85 Aligned_cols=228 Identities=10% Similarity=0.039 Sum_probs=161.7
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
...+ |+||||||+||||++++++|+++|++|++++|+..... ..+.++.+|++|++++++++++
T Consensus 11 ~~~~-k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~~Dv~~~~~v~~~~~~~~ 76 (269)
T 3vtz_A 11 EFTD-KVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV-------------NVSDHFKIDVTNEEEVKEAVEKTT 76 (269)
T ss_dssp TTTT-CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT-------------TSSEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc-------------CceeEEEecCCCHHHHHHHHHHHH
Confidence 4556 99999999999999999999999999999998654331 3577889999999999988865
Q ss_pred ---CCCcEEEEcCcccCccCCc----CChHHHHHHHHHHHHHHHH----HHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLVVLE----SMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~ll~----~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+....... ++.+..+++|+.++.++++ .|++.+.++||++||...+....
T Consensus 77 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 148 (269)
T 3vtz_A 77 KKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAATK-------- 148 (269)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCT--------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCC--------
Confidence 4899999999986544322 2334567899999655554 45566778999999988775332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKNS--DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
+...|+.||++.+.+++.++.+. ++++++|+||.|.++........ ...................
T Consensus 149 ---~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~----~~~~~~~~~~~~~~~~~~~------ 215 (269)
T 3vtz_A 149 ---NAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKM----EVGEDENAVERKIEEWGRQ------ 215 (269)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHH----HHCCSTTHHHHHHHHHHHH------
T ss_pred ---CChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhc----cccccchhhHHHHHHHHhc------
Confidence 36789999999999999999884 89999999999988531000000 0000000001111111111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
.....+.+++|+|+++++++.... ...++++++.+|..
T Consensus 216 ----------~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 254 (269)
T 3vtz_A 216 ----------HPMGRIGRPEEVAEVVAFLASDRSSFITGACLTVDGGLL 254 (269)
T ss_dssp ----------STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ----------CCCCCCcCHHHHHHHHHHHhCCccCCCcCcEEEECCCcc
Confidence 122357899999999999987543 23468999988754
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=215.59 Aligned_cols=225 Identities=16% Similarity=0.138 Sum_probs=163.5
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEec-CCCCCchhhhhhhhhcCCCCceEEEEccCCCH----HHHHHHhh
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN-LSRGNIGAVKVLQELFPEPGRLQFIYADLGDA----KAVNKFFS 142 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~----~~~~~~~~ 142 (413)
.+ |++|||||+||||++++++|+++|++|++++| +....+++.+.+.+.. +.++.++.+|++|. ++++++++
T Consensus 10 ~~-k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (276)
T 1mxh_A 10 EC-PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAAR--AGSAVLCKGDLSLSSSLLDCCEDIID 86 (276)
T ss_dssp -C-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS--TTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred CC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhc--CCceEEEeccCCCccccHHHHHHHHH
Confidence 45 89999999999999999999999999999987 4333233333332221 24689999999999 88888776
Q ss_pred c-----CCCcEEEEcCcccCccCCc---------------CChHHHHHHHHHHHHHHHHHHHHc---CC------CEEEE
Q 015080 143 E-----NAFDAVMHFAAVAYVGEST---------------LDPLKYYHNITSNTLVVLESMARH---GV------DTLIY 193 (413)
Q Consensus 143 ~-----~~~dvvi~~Ag~~~~~~~~---------------~~~~~~~~~n~~~~~~ll~~~~~~---~~------~~iV~ 193 (413)
+ .++|+||||||+....... ++.+..+++|+.++.++++++... +. ++||+
T Consensus 87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~ 166 (276)
T 1mxh_A 87 CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVN 166 (276)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEE
T ss_pred HHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Confidence 4 4899999999986543222 334457899999998888888763 34 79999
Q ss_pred eccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccc
Q 015080 194 SSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREH 270 (413)
Q Consensus 194 ~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~ 270 (413)
+||...+... .+...|+.||++.+.+++.++.+ .|+++++|+||.|.++ .
T Consensus 167 isS~~~~~~~-----------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~--------------- 219 (276)
T 1mxh_A 167 LCDAMTDLPL-----------PGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-P--------------- 219 (276)
T ss_dssp ECCGGGGSCC-----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-S---------------
T ss_pred ECchhhcCCC-----------CCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-c---------------
Confidence 9998876432 23678999999999999999887 4899999999999987 2
Q ss_pred cchHHHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCc
Q 015080 271 GRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKG 338 (413)
Q Consensus 271 ~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~ 338 (413)
.+.+..........+ -+ +++.+++|+|+++++++..... ..+++|++.+|..
T Consensus 220 -~~~~~~~~~~~~~~p------------~~---r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~ 272 (276)
T 1mxh_A 220 -AMPQETQEEYRRKVP------------LG---QSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGLI 272 (276)
T ss_dssp -SSCHHHHHHHHTTCT------------TT---SCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred -cCCHHHHHHHHhcCC------------CC---CCCCCHHHHHHHHHHHhCccccCccCcEEEECCchh
Confidence 111112222222211 11 2278999999999999875332 2457999987753
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=219.95 Aligned_cols=256 Identities=14% Similarity=0.106 Sum_probs=173.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC---------CchhhhhhhhhcCCCCceEEEEccCCCHHH
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG---------NIGAVKVLQELFPEPGRLQFIYADLGDAKA 136 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 136 (413)
.+.+ |+||||||+|+||++++++|+++|++|++++|.... .+...+...++...+.++.++.+|++|.++
T Consensus 7 ~l~g-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 85 (287)
T 3pxx_A 7 RVQD-KVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAA 85 (287)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHH
T ss_pred ccCC-CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHH
Confidence 3556 999999999999999999999999999999986221 111222222222224679999999999999
Q ss_pred HHHHhhc-----CCCcEEEEcCcccCcc--CCcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCC
Q 015080 137 VNKFFSE-----NAFDAVMHFAAVAYVG--ESTLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMP 207 (413)
Q Consensus 137 ~~~~~~~-----~~~dvvi~~Ag~~~~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~ 207 (413)
+++++++ .++|+||||||+.... ...++.+..+++|+.++.++++++... +.++||++||...+......+
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~ 165 (287)
T 3pxx_A 86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQPP 165 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccccccc
Confidence 9888865 4899999999986543 233445678999999999999988765 456999999987764332222
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcc
Q 015080 208 ITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGI 284 (413)
Q Consensus 208 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (413)
..+..+..+...|+.||++.+.+++.++.+ .|+++++|+||.|.++.... .+. .......
T Consensus 166 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~----------------~~~-~~~~~~~ 228 (287)
T 3pxx_A 166 GAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNS----------------APM-YRQFRPD 228 (287)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSS----------------HHH-HHHHCTT
T ss_pred cccccCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccc----------------cch-hhhhccc
Confidence 333333345678999999999999999988 48999999999999875321 000 0000000
Q ss_pred ccceeEec--ccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCccc
Q 015080 285 IAGLKVKG--TDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRS 340 (413)
Q Consensus 285 ~~~i~~~g--~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s 340 (413)
...-.... ..... .......+.+++|+|+++++++.... ...++++++.+|..++
T Consensus 229 ~~~~~~~~~~~~~~~-~~~~~~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdGG~~~~ 286 (287)
T 3pxx_A 229 LEAPSRADALLAFPA-MQAMPTPYVEASDISNAVCFLASDESRYVTGLQFKVDAGAMLK 286 (287)
T ss_dssp SSSCCHHHHHHHGGG-GCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGG
T ss_pred cccchhHHHHhhhhh-hcccCCCCCCHHHHHhhHheecchhhcCCCCceEeECchhhhc
Confidence 00000000 00000 01111568999999999999987542 2356899998886553
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=212.44 Aligned_cols=226 Identities=18% Similarity=0.168 Sum_probs=167.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
+++| |++|||||+++||.++++.|+++|++|++.+|+. .+++.+.+.+. +.++.++.+|++|+++++++++..+
T Consensus 6 ~L~G-KvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~--~~~~~~~~~~~---g~~~~~~~~Dv~d~~~v~~~~~~g~ 79 (247)
T 4hp8_A 6 SLEG-RKALVTGANTGLGQAIAVGLAAAGAEVVCAARRA--PDETLDIIAKD---GGNASALLIDFADPLAAKDSFTDAG 79 (247)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC--CHHHHHHHHHT---TCCEEEEECCTTSTTTTTTSSTTTC
T ss_pred CCCC-CEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCc--HHHHHHHHHHh---CCcEEEEEccCCCHHHHHHHHHhCC
Confidence 4678 9999999999999999999999999999999753 24455555443 5679999999999999999988889
Q ss_pred CcEEEEcCcccCccCC----cCChHHHHHHHHHH----HHHHHHHHHHcC-CCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGES----TLDPLKYYHNITSN----TLVVLESMARHG-VDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~----~~~ll~~~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
+|++|||||+...... .++++..+++|+.+ ++.+++.|++++ .++||++||...+.... .
T Consensus 80 iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~-----------~ 148 (247)
T 4hp8_A 80 FDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGI-----------R 148 (247)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCS-----------S
T ss_pred CCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCC-----------C
Confidence 9999999998755443 33455578899988 555666776664 68999999977653322 2
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
..+|+.||++...+++.++.| +||+++.|.||.|-.|..... .--+..........|
T Consensus 149 ~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~-------------~~~~~~~~~~~~~~P------- 208 (247)
T 4hp8_A 149 VPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEAL-------------RADAARNKAILERIP------- 208 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHH-------------HTSHHHHHHHHTTCT-------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhc-------------ccCHHHHHHHHhCCC-------
Confidence 668999999999999999988 689999999999977531100 000111222222222
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
...+...+|+|.++++++..... -.++++.+.+|.
T Consensus 209 ---------lgR~g~peeiA~~v~fLaSd~a~~iTG~~i~VDGG~ 244 (247)
T 4hp8_A 209 ---------AGRWGHSEDIAGAAVFLSSAAADYVHGAILNVDGGW 244 (247)
T ss_dssp ---------TSSCBCTHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred ---------CCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECccc
Confidence 12356789999999998875432 355789887663
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=208.20 Aligned_cols=213 Identities=14% Similarity=0.121 Sum_probs=158.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+||||||+++||+++|+.|+++|++|++++|+.. ...+.. ....++.++++|++|++++++++++ ++
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~---~~~~~~----~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~ 75 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEK---RSADFA----KERPNLFYFHGDVADPLTLKKFVEYAMEKLQR 75 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHH----TTCTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHH----HhcCCEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 89999999999999999999999999999987532 222222 2236789999999999999988765 78
Q ss_pred CcEEEEcCcccCccCC----cCChHHHHHHHHHHH----HHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGES----TLDPLKYYHNITSNT----LVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~----~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||+...... .++.+..+++|+.++ +.+++.|++.+ ++||++||...+...+ ..
T Consensus 76 iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-G~IInisS~~~~~~~~-----------~~ 143 (247)
T 3ged_A 76 IDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK-GRIINIASTRAFQSEP-----------DS 143 (247)
T ss_dssp CCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGTSCCT-----------TC
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CcEEEEeecccccCCC-----------CC
Confidence 9999999998655432 234555788999984 45666666655 7999999977653322 26
Q ss_pred ChhHHHHHHHHHHHHHHHhh--CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN--SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDY 295 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~--~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 295 (413)
.+|+.||++...+++.++.| .|+++++|.||.|-.+... .+.... ....| +
T Consensus 144 ~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~---------------~~~~~~----~~~~P---l----- 196 (247)
T 3ged_A 144 EAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQ---------------EFTQED----CAAIP---A----- 196 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC------------------CCHHH----HHTST---T-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcH---------------HHHHHH----HhcCC---C-----
Confidence 78999999999999999988 5899999999998765421 111111 11111 1
Q ss_pred cCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCc
Q 015080 296 STADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKG 338 (413)
Q Consensus 296 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~ 338 (413)
..+...+|+|+++++++.. .--.|+++.+.+|-+
T Consensus 197 --------~R~g~pediA~~v~fL~s~-~~iTG~~i~VDGG~s 230 (247)
T 3ged_A 197 --------GKVGTPKDISNMVLFLCQQ-DFITGETIIVDGGMS 230 (247)
T ss_dssp --------SSCBCHHHHHHHHHHHHHC-SSCCSCEEEESTTGG
T ss_pred --------CCCcCHHHHHHHHHHHHhC-CCCCCCeEEECcCHH
Confidence 1356789999999999974 344568999977744
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-27 Score=215.44 Aligned_cols=231 Identities=14% Similarity=0.042 Sum_probs=167.1
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+....++..+.+.+.. +.++.++.+|++|++++++++++
T Consensus 17 ~l~~-k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~ 93 (266)
T 4egf_A 17 RLDG-KRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF--GTDVHTVAIDLAEPDAPAELARRAA 93 (266)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--CCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3556 999999999999999999999999999999986544444444443311 35799999999999999888765
Q ss_pred ---CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHH----HHHcC-CCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLES----MARHG-VDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~----~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+...... .++.+..+++|+.++.+++++ +++.+ .++||++||...+..
T Consensus 94 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~--------- 164 (266)
T 4egf_A 94 EAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAP--------- 164 (266)
T ss_dssp HHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC---------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccC---------
Confidence 589999999998754332 233455788999996665554 44544 579999999887643
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
..+...|+.||++.+.+++.++.+ .|+++++|+||.|.++..... ...+..........
T Consensus 165 --~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~--- 226 (266)
T 4egf_A 165 --LPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRV-------------WGDEAKSAPMIARI--- 226 (266)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHH-------------TCSHHHHHHHHTTC---
T ss_pred --CCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhh-------------ccChHHHHHHHhcC---
Confidence 233678999999999999999888 589999999999987531100 00011111122111
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCcc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKGR 339 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~~ 339 (413)
....+..++|+|+++++++... ....++++++.+|..+
T Consensus 227 -------------p~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~~~ 265 (266)
T 4egf_A 227 -------------PLGRFAVPHEVSDAVVWLASDAASMINGVDIPVDGGYTM 265 (266)
T ss_dssp -------------TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred -------------CCCCCcCHHHHHHHHHHHhCchhcCccCcEEEECCCccC
Confidence 1235678999999999988754 3335689999887643
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-27 Score=217.55 Aligned_cols=229 Identities=16% Similarity=0.116 Sum_probs=153.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+||||++++++|+++|++|+++++.. .+...+...++...+.++.++++|++|++++++++++
T Consensus 27 ~~~-k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 103 (280)
T 4da9_A 27 KAR-PVAIVTGGRRGIGLGIARALAASGFDIAITGIGD--AEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVA 103 (280)
T ss_dssp CCC-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCC--HHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHH
T ss_pred cCC-CEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCC--HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 445 8999999999999999999999999999998522 2333333333333346799999999999998888765
Q ss_pred --CCCcEEEEcCcccC--ccC----CcCChHHHHHHHHHHHHHH----HHHHHHcC---CCEEEEeccceecCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAY--VGE----STLDPLKYYHNITSNTLVV----LESMARHG---VDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~--~~~----~~~~~~~~~~~n~~~~~~l----l~~~~~~~---~~~iV~~SS~~~~~~~~~~~~ 208 (413)
.++|+||||||+.. ... ..++.+..+++|+.++.++ ++.+++.+ .++||++||...+...
T Consensus 104 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~----- 178 (280)
T 4da9_A 104 EFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTS----- 178 (280)
T ss_dssp HHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-----------
T ss_pred HcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCC-----
Confidence 48999999999832 222 2334455777999996654 44555544 5799999997765322
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
.+..+|+.||++.+.+++.++.+ .|+++++|+||.|.++... .+.+........
T Consensus 179 ------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~---------------~~~~~~~~~~~~-- 235 (280)
T 4da9_A 179 ------PERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTA---------------AVSGKYDGLIES-- 235 (280)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC---------------------------------
T ss_pred ------CCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchh---------------hcchhHHHHHhh--
Confidence 23678999999999999999988 7899999999999987422 111111111111
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCcc
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGR 339 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~ 339 (413)
.......+..++|+|+++++++..... ..++++++.+|..+
T Consensus 236 -------------~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 277 (280)
T 4da9_A 236 -------------GLVPMRRWGEPEDIGNIVAGLAGGQFGFATGSVIQADGGLSI 277 (280)
T ss_dssp -------------------CCBCHHHHHHHHHHHHTSTTGGGTTCEEEESTTCC-
T ss_pred -------------cCCCcCCcCCHHHHHHHHHHHhCccccCCCCCEEEECCCccc
Confidence 011234578999999999999875432 24579999887543
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=213.41 Aligned_cols=226 Identities=16% Similarity=0.152 Sum_probs=161.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+|+||++++++|+++|++|++++|+... ..+..+++... .++.++.+|++|++++.++++.
T Consensus 4 ~~~-k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (251)
T 1zk4_A 4 LDG-KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDV---GEKAAKSVGTP-DQIQFFQHDSSDEDGWTKLFDATEK 78 (251)
T ss_dssp TTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHHCCT-TTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHhhcc-CceEEEECCCCCHHHHHHHHHHHHH
Confidence 445 899999999999999999999999999999875432 22223333222 5789999999999999988865
Q ss_pred --CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHH----HHHHHHHHcCC-CEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTL----VVLESMARHGV-DTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~----~ll~~~~~~~~-~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+...... .++.+..+++|+.++. .+++.+++.+. ++||++||...+...
T Consensus 79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~--------- 149 (251)
T 1zk4_A 79 AFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD--------- 149 (251)
T ss_dssp HHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC---------
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCC---------
Confidence 479999999997644322 2234567889999754 45566666666 799999998876432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh-----CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN-----SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
.+...|+.||++.+.+++.++.+ .|++++++|||.++++.... +....... ...
T Consensus 150 --~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~---------------~~~~~~~~--~~~-- 208 (251)
T 1zk4_A 150 --PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDD---------------LPGAEEAM--SQR-- 208 (251)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHT---------------STTHHHHH--TST--
T ss_pred --CCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhh---------------cCchhhhH--HHh--
Confidence 23678999999999999988763 68999999999999864210 00000000 000
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
.......+++++|+|++++.++.... ...+++|++.+|..
T Consensus 209 -----------~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 249 (251)
T 1zk4_A 209 -----------TKTPMGHIGEPNDIAYICVYLASNESKFATGSEFVVDGGYT 249 (251)
T ss_dssp -----------TTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred -----------hcCCCCCCcCHHHHHHHHHHHcCcccccccCcEEEECCCcc
Confidence 11112357899999999999987543 22457999988754
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=224.33 Aligned_cols=245 Identities=16% Similarity=0.093 Sum_probs=176.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC-------CCCchhhhhhhhhcCCCCceEEEEccCCCHHHHH
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS-------RGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVN 138 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 138 (413)
.+.+ |++|||||+|+||.++|++|+++|++|++++|+. +..+...+...++...+.++.++.+|++|.++++
T Consensus 24 ~l~g-k~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 102 (322)
T 3qlj_A 24 VVDG-RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAA 102 (322)
T ss_dssp TTTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHH
T ss_pred ccCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHH
Confidence 3556 9999999999999999999999999999998761 1123333333333333567899999999999998
Q ss_pred HHhhc-----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHH----cC------CCEEEEecccee
Q 015080 139 KFFSE-----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMAR----HG------VDTLIYSSTCAT 199 (413)
Q Consensus 139 ~~~~~-----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~------~~~iV~~SS~~~ 199 (413)
+++++ .++|+||||||+..... ..++.+..+++|+.++.++++++.. .+ .++||++||...
T Consensus 103 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~ 182 (322)
T 3qlj_A 103 GLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAG 182 (322)
T ss_dssp HHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHH
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHH
Confidence 88865 48999999999865433 2334556788999997777666532 21 269999999776
Q ss_pred cCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHH
Q 015080 200 YGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGA 276 (413)
Q Consensus 200 ~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 276 (413)
+... .+...|+.||++.+.+++.++.+ .|+++++|+|| +..+....... ..
T Consensus 183 ~~~~-----------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~-----------~~--- 236 (322)
T 3qlj_A 183 LQGS-----------VGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFA-----------EM--- 236 (322)
T ss_dssp HHCB-----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCC-----------C----
T ss_pred ccCC-----------CCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhh-----------hh---
Confidence 5322 23678999999999999999988 68999999999 65543211000 00
Q ss_pred HHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCcc----------------
Q 015080 277 CFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGR---------------- 339 (413)
Q Consensus 277 ~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~---------------- 339 (413)
.. .......++.++|+|+++++++..... ..+++|++.+|...
T Consensus 237 -~~-------------------~~~~~~~~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~ 296 (322)
T 3qlj_A 237 -MA-------------------TQDQDFDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGKIRVAEGWAHGPQIDKGAR 296 (322)
T ss_dssp ---------------------------CCTTCGGGTHHHHHHHTSGGGGGCCSCEEEEETTEEEEEECCEEEEEEECSSC
T ss_pred -hh-------------------ccccccCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccccCCCcccccccCccCC
Confidence 00 111223567899999999999874332 24579999887654
Q ss_pred -cHHHHHHHHHHHcCCCce
Q 015080 340 -SVKEFVEACKKATSANIK 357 (413)
Q Consensus 340 -s~~e~~~~i~~~~g~~~~ 357 (413)
++.|+++.+.+.+|.+.+
T Consensus 297 ~~~~el~~~~~~~~~~~~~ 315 (322)
T 3qlj_A 297 WDPAELGPVVADLLGKARP 315 (322)
T ss_dssp CCGGGHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHhhccCC
Confidence 779999999999985544
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=216.69 Aligned_cols=225 Identities=15% Similarity=0.139 Sum_probs=163.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+....+++.+.+.+ .+.++.++.+|++|++++++++++
T Consensus 20 l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 95 (277)
T 2rhc_B 20 QDS-EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE---AGVEADGRTCDVRSVPEIEALVAAVVE 95 (277)
T ss_dssp TTS-CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 456 8999999999999999999999999999998764333333333332 235788999999999999888764
Q ss_pred --CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHH------HcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMA------RHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~------~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+...... .++.+..+++|+.++.++++++. +.+.++||++||...+..
T Consensus 96 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~--------- 166 (277)
T 2rhc_B 96 RYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQG--------- 166 (277)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSC---------
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccC---------
Confidence 479999999998654322 22345678899999877777644 446689999999776532
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHH-----------HH
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISG-----------AC 277 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 277 (413)
..+...|+.||++.+.+++.++.+ .|+++++|+||.+.++... .... ..
T Consensus 167 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~~~~ 229 (277)
T 2rhc_B 167 --VVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAA---------------SVREHYSDIWEVSTEEA 229 (277)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHH---------------HHHHHHHHHHTCCHHHH
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhh---------------hhhhhcccccccchHHH
Confidence 223678999999999999999877 5899999999999885310 1100 00
Q ss_pred HHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 278 FDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 278 ~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
....... .....+++++|+|+++++++.... ...+++|++.+|.
T Consensus 230 ~~~~~~~----------------~p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdGG~ 274 (277)
T 2rhc_B 230 FDRITAR----------------VPIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGGL 274 (277)
T ss_dssp HHHHHHH----------------STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred HHHHHhc----------------CCCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCCc
Confidence 1111110 112358899999999999987543 2345799998764
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=214.87 Aligned_cols=224 Identities=17% Similarity=0.145 Sum_probs=161.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+|+||++++++|+++|++|++++|+.. ...+..+++... .++.++.+|++|++++++++++
T Consensus 27 l~~-k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~---~~~~~~~~l~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (276)
T 2b4q_A 27 LAG-RIALVTGGSRGIGQMIAQGLLEAGARVFICARDAE---ACADTATRLSAY-GDCQAIPADLSSEAGARRLAQALGE 101 (276)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHHHTTS-SCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHHHHHhc-CceEEEEeeCCCHHHHHHHHHHHHH
Confidence 456 89999999999999999999999999999987543 233333333222 3788899999999999888865
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHH----HHHHHHHHcCC----CEEEEeccceecCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTL----VVLESMARHGV----DTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~----~ll~~~~~~~~----~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|+||||||+..... ..++.+..+++|+.++. .+++.+++.+. ++||++||...+....
T Consensus 102 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~~----- 176 (276)
T 2b4q_A 102 LSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMG----- 176 (276)
T ss_dssp HCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCCC-----
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCCC-----
Confidence 48999999999765432 22345668899999974 45555656554 8999999987764322
Q ss_pred CCCCCCCCC-hhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhc--
Q 015080 210 EETPQAPIN-PYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARG-- 283 (413)
Q Consensus 210 e~~~~~~~~-~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 283 (413)
+.. +|+.||++.+.+++.++.+ .|+++++|+||.+.++... ............
T Consensus 177 ------~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~---------------~~~~~~~~~~~~~~ 235 (276)
T 2b4q_A 177 ------EQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTR---------------HIANDPQALEADSA 235 (276)
T ss_dssp ------CSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTH---------------HHHHCHHHHHHHHH
T ss_pred ------CCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchh---------------hcchhHHHHHHhhc
Confidence 244 8999999999999999877 5899999999999886411 111111111111
Q ss_pred cccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 284 IIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 284 ~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
..+ ...+.+++|+|+++++++.... ...++++++.+|.
T Consensus 236 ~~p----------------~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 274 (276)
T 2b4q_A 236 SIP----------------MGRWGRPEEMAALAISLAGTAGAYMTGNVIPIDGGF 274 (276)
T ss_dssp TST----------------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCC----------------CCCcCCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 111 1247899999999999987542 2345799997764
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=222.29 Aligned_cols=237 Identities=13% Similarity=0.174 Sum_probs=172.6
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCC-c--hhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN-I--GAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~-~--~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
||+|+||||||+||++++++|++.|++|++++|+.... . ...+.++.+. ..+++++.+|++|++++.+++ .++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d~~~l~~~~--~~~ 77 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQ--SLGVILLEGDINDHETLVKAI--KQV 77 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHH--HTTCEEEECCTTCHHHHHHHH--TTC
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHH--hCCCEEEEeCCCCHHHHHHHH--hCC
Confidence 47899999999999999999999999999999865111 1 1112222221 146899999999999999999 689
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccceecCCCCCCCCCCCCCCCC-CChhHHHH
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VDTLIYSSTCATYGEPEKMPITEETPQAP-INPYGKAK 224 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~~-~~~Y~~sK 224 (413)
|+|||+||... +.++.++++++++.+ +++||+ | +||.. .++..+..| ...| .+|
T Consensus 78 d~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~----~~~~~~~~p~~~~y-~sK 133 (307)
T 2gas_A 78 DIVICAAGRLL---------------IEDQVKIIKAIKEAGNVKKFFP-S---EFGLD----VDRHDAVEPVRQVF-EEK 133 (307)
T ss_dssp SEEEECSSSSC---------------GGGHHHHHHHHHHHCCCSEEEC-S---CCSSC----TTSCCCCTTHHHHH-HHH
T ss_pred CEEEECCcccc---------------cccHHHHHHHHHhcCCceEEee-c---ccccC----cccccCCCcchhHH-HHH
Confidence 99999998642 345788999999998 999983 3 34422 122233334 4578 999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceee
Q 015080 225 KMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304 (413)
Q Consensus 225 ~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 304 (413)
.++|.+++. .|++++++||+.++++... .+.... ........ +.+.+ +++..+
T Consensus 134 ~~~e~~~~~----~~i~~~~lrp~~~~~~~~~---------------~~~~~~-~~~~~~~~-~~~~~------~~~~~~ 186 (307)
T 2gas_A 134 ASIRRVIEA----EGVPYTYLCCHAFTGYFLR---------------NLAQLD-ATDPPRDK-VVILG------DGNVKG 186 (307)
T ss_dssp HHHHHHHHH----HTCCBEEEECCEETTTTGG---------------GTTCTT-CSSCCSSE-EEEET------TSCSEE
T ss_pred HHHHHHHHH----cCCCeEEEEcceeeccccc---------------cccccc-cccCCCCe-EEEec------CCCcce
Confidence 999998875 6899999999998875311 000000 00011112 55555 677889
Q ss_pred ecccHHHHHHHHHHHHHhcCCCCccEEEecCC-CcccHHHHHHHHHHHcCCCceeEecC
Q 015080 305 DYIDVNDLVDAHVKALERAQPKKVGIYNVGTG-KGRSVKEFVEACKKATSANIKVIYEP 362 (413)
Q Consensus 305 ~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~-~~~s~~e~~~~i~~~~g~~~~~~~~~ 362 (413)
++++++|+|++++.++..+... +++|++.++ +.+|+.|+++.+.+.+|.+.++...+
T Consensus 187 ~~i~~~Dva~~~~~~l~~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (307)
T 2gas_A 187 AYVTEADVGTFTIRAANDPNTL-NKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVS 244 (307)
T ss_dssp EEECHHHHHHHHHHHHTCGGGT-TEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEEC
T ss_pred EEeeHHHHHHHHHHHHcCcccc-CceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeecC
Confidence 9999999999999999865432 367887654 68999999999999999988776554
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-26 Score=208.18 Aligned_cols=225 Identities=16% Similarity=0.126 Sum_probs=153.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+.... . .++.++.+|++|++++++++++
T Consensus 5 l~~-k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~-----------~--~~~~~~~~D~~d~~~~~~~~~~~~~ 70 (250)
T 2fwm_X 5 FSG-KNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQE-----------Q--YPFATEVMDVADAAQVAQVCQRLLA 70 (250)
T ss_dssp CTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSS-----------C--CSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhh-----------c--CCceEEEcCCCCHHHHHHHHHHHHH
Confidence 456 8999999999999999999999999999999864311 0 1378899999999999988864
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++ ++.+.++||++||...+..
T Consensus 71 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~----------- 139 (250)
T 2fwm_X 71 ETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTP----------- 139 (250)
T ss_dssp HCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC-----------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCC-----------
Confidence 48999999999865432 22345567889999976665555 6667789999999877632
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHH-HHhcccccee
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFD-AARGIIAGLK 289 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~ 289 (413)
..+...|+.||++.+.+++.++.+ .|+++++|+||.++++....... ...... .......
T Consensus 140 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-------------~~~~~~~~~~~~~~--- 203 (250)
T 2fwm_X 140 RIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWV-------------SDDAEEQRIRGFGE--- 203 (250)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------------------
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCcccccccc-------------ChhHHHHHHhhhhh---
Confidence 233678999999999999999887 58999999999999875321000 000000 0000000
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
... .......+.+++|+|+++++++.... ...++++++.+|..
T Consensus 204 ~~~------~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 247 (250)
T 2fwm_X 204 QFK------LGIPLGKIARPQEIANTILFLASDLASHITLQDIVVDGGST 247 (250)
T ss_dssp ------------------CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred ccc------ccCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 000 01112347899999999999987542 23457999987754
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=213.57 Aligned_cols=237 Identities=14% Similarity=0.031 Sum_probs=159.7
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC-CchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG-NIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
.+ |+||||||+||||++++++|+++|++|++++|+... .+++.+.+.+.. +.++.++.+|++|++++++++++
T Consensus 3 ~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~ 79 (260)
T 1x1t_A 3 KG-KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH--GVKVLYDGADLSKGEAVRGLVDNAVR 79 (260)
T ss_dssp TT-CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH--TSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CC-CEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhcc--CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 35 899999999999999999999999999999875432 222223332211 24688999999999999888864
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHH----HHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVL----ESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll----~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..++.+..+++|+.++.+++ +.|++.+.++||++||...+...
T Consensus 80 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 149 (260)
T 1x1t_A 80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVAS---------- 149 (260)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCC----------
Confidence 58999999999765332 22334567889999866654 44556677899999998776432
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHH-hcccccee
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAA-RGIIAGLK 289 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~ 289 (413)
.+..+|+.||++.+.+++.++.+ .|+++++|+||.|.++........... . .+.-........ ..
T Consensus 150 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~------ 218 (260)
T 1x1t_A 150 -ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAE-K---NGVDQETAARELLSE------ 218 (260)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------CHHH------
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhcc-c---cCCchHHHHHHHhhc------
Confidence 23678999999999999999887 589999999999998753210000000 0 000000000000 00
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
......+.+++|+|+++++++.... ...+++|++.+|..
T Consensus 219 ----------~~p~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgG~~ 258 (260)
T 1x1t_A 219 ----------KQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGWT 258 (260)
T ss_dssp ----------HCTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ----------cCCCCCCcCHHHHHHHHHHHhChhhcCCCCCEEEECCCcc
Confidence 0012357899999999999987542 23457999987743
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=212.83 Aligned_cols=229 Identities=16% Similarity=0.097 Sum_probs=160.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+|+||++++++|+++|++|++++|+....+++.+.+... +.++.++.+|++|++++++++++ .+
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA---GGHAVAVKVDVSDRDQVFAAVEQARKTLGG 79 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999999987543333333333322 35788999999999999988864 48
Q ss_pred CcEEEEcCcccCccCC----cCChHHHHHHHHHHHHH----HHHHHHHcC-CCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLV----VLESMARHG-VDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~----ll~~~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
+|+||||||+...... .++.+..+++|+.++.+ +++.+++.+ .++||++||...+... .+
T Consensus 80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------~~ 148 (256)
T 1geg_A 80 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN-----------PE 148 (256)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC-----------TT
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC-----------CC
Confidence 9999999997643322 23345578899998655 555555556 6899999997765321 23
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhc-----cccce
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARG-----IIAGL 288 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i 288 (413)
...|+.||++.+.+++.++.+ .|+++++|+||.|.++. .......... .....
T Consensus 149 ~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~-------------------~~~~~~~~~~~~~~~~~~~~ 209 (256)
T 1geg_A 149 LAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPM-------------------WAEIDRQVSEAAGKPLGYGT 209 (256)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHH-------------------HHHHHHHHHHHHTCCTTHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccch-------------------hhhhhhhccccccCChHHHH
Confidence 568999999999999999877 58999999999998752 1111000000 00000
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
.... .......+.+++|+|+++++++.... ...++++++.+|..
T Consensus 210 ~~~~------~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 254 (256)
T 1geg_A 210 AEFA------KRITLGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGGMV 254 (256)
T ss_dssp HHHH------TTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred HHHH------hcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCCcc
Confidence 0000 00112357899999999999987542 23457999987754
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-27 Score=215.03 Aligned_cols=237 Identities=12% Similarity=0.118 Sum_probs=163.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+....+++.+.+..... +.++.++.+|++|++++++++++
T Consensus 5 l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (260)
T 2z1n_A 5 IQG-KLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVS-GAQVDIVAGDIREPGDIDRLFEKARD 82 (260)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHST-TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 456 8999999999999999999999999999998754333333333332111 13688999999999999888864
Q ss_pred -CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHH----HHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNT----LVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~----~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||+..... ..++.+..+++|+.++ +.+++.|++.+.++||++||...+...
T Consensus 83 ~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 151 (260)
T 2z1n_A 83 LGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPW----------- 151 (260)
T ss_dssp TTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----------
T ss_pred hcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCC-----------
Confidence 24999999999764332 2234456788999996 666677777778899999998876432
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHH-HHHHhccccceeE
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGAC-FDAARGIIAGLKV 290 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~ 290 (413)
.+..+|+.||++.+.+++.++.+ .|+++++|+||.|+++........... . ....... .....
T Consensus 152 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~--~---~~~~~~~~~~~~~-------- 218 (260)
T 2z1n_A 152 QDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERAR--R---SGITVEEALKSMA-------- 218 (260)
T ss_dssp TTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC-----------------------------------
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhc--c---cCCcHHHHHHHHH--------
Confidence 23678999999999999999887 489999999999999853210000000 0 0000000 00000
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
.......+.+++|+|+++++++.... ...++++++.+|.
T Consensus 219 --------~~~p~~r~~~~~dva~~v~~l~s~~~~~~tG~~i~vdGG~ 258 (260)
T 2z1n_A 219 --------SRIPMGRVGKPEELASVVAFLASEKASFITGAVIPVDGGA 258 (260)
T ss_dssp ---------CCTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred --------hcCCCCCccCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 11112347899999999999987532 2345799997764
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=211.75 Aligned_cols=232 Identities=15% Similarity=0.111 Sum_probs=161.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+|+||++++++|+++|++|++++|+... ....+..+++...+.++.++.+|++|++++++++++ .+
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 81 (258)
T 3a28_C 3 KVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQE-EQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG 81 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGH-HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcch-HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999999999875432 002222223322245789999999999999888764 48
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCC-CEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGV-DTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
+|+||||||+..... ..++.+..+++|+.++.++++++ ++.+. ++||++||...+.. ..+
T Consensus 82 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----------~~~ 150 (258)
T 3a28_C 82 FDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQG-----------FPI 150 (258)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSC-----------CTT
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccC-----------CCC
Confidence 999999999865432 22344567889999966655554 44566 89999999876532 223
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHH-h--cc--ccce
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAA-R--GI--IAGL 288 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~--~~~i 288 (413)
...|+.||++.+.+++.++.+ .|+++++++||.|.++. ........ . .. ....
T Consensus 151 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~-------------------~~~~~~~~~~~~~~~~~~~~ 211 (258)
T 3a28_C 151 LSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGM-------------------WEQIDAELSKINGKPIGENF 211 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHH-------------------HHHHHHHHHHHHCCCTTHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChh-------------------hhhhhhhhccccCCchHHHH
Confidence 678999999999999999877 58999999999998752 11100000 0 00 0000
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
.... .......+.+++|+|+++++++.... ...++++++.+|...
T Consensus 212 ~~~~------~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~~ 257 (258)
T 3a28_C 212 KEYS------SSIALGRPSVPEDVAGLVSFLASENSNYVTGQVMLVDGGMLY 257 (258)
T ss_dssp HHHH------TTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSCC
T ss_pred HHHH------hcCCCCCccCHHHHHHHHHHHhCcccCCCCCCEEEECCCEec
Confidence 0000 00112347899999999999987542 234579999877543
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=212.27 Aligned_cols=227 Identities=11% Similarity=0.038 Sum_probs=163.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEec-CCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN-LSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
+.+ |+||||||+|+||++++++|+++|++|++++| .....++..+.+.+ .+.++.++.+|++|++++.+++++
T Consensus 5 l~~-k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (261)
T 1gee_A 5 LEG-KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKK---VGGEAIAVKGDVTVESDVINLVQSAI 80 (261)
T ss_dssp GTT-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---TTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHHHH
Confidence 445 89999999999999999999999999999987 33222222223322 235788999999999999888764
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHH----HHHcC-CCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLES----MARHG-VDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+..... ..++.+..+++|+.++.+++++ +++.+ .++||++||...+.
T Consensus 81 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~---------- 150 (261)
T 1gee_A 81 KEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI---------- 150 (261)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS----------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC----------
Confidence 48999999999765432 2234456788999997665554 44555 67999999977653
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccch--HHHHHHHHhcccc
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRI--SGACFDAARGIIA 286 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 286 (413)
+..+...|+.||++.+.+++.++.+ .|++++++|||.|+++... .. .+..........
T Consensus 151 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~~- 213 (261)
T 1gee_A 151 -PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINA---------------EKFADPEQRADVESMI- 213 (261)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGH---------------HHHHSHHHHHHHHTTC-
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhh---------------hcccChhHHHHHHhcC-
Confidence 2344778999999999999998877 4899999999999987411 11 011111111111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
....+++++|+|++++.++.... ...++++++.+|...
T Consensus 214 ---------------~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~ 252 (261)
T 1gee_A 214 ---------------PMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGMTL 252 (261)
T ss_dssp ---------------TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred ---------------CCCCCcCHHHHHHHHHHHhCccccCCCCcEEEEcCCccc
Confidence 11357899999999999987532 224579999887643
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=217.80 Aligned_cols=234 Identities=12% Similarity=0.051 Sum_probs=167.2
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++.+ |++|||||+|+||++++++|+++|++|++++|..++.+.+.+...++...+.++.++.+|++|++++++++++
T Consensus 8 ~l~~-k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 86 (262)
T 3ksu_A 8 DLKN-KVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAE 86 (262)
T ss_dssp CCTT-CEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 4556 9999999999999999999999999999998866655555555555555457899999999999999988865
Q ss_pred ---CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||+...... .++.+..+++|+.++.++++++... +.++||++||...+....
T Consensus 87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~---------- 156 (262)
T 3ksu_A 87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTG---------- 156 (262)
T ss_dssp HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHHC----------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCCC----------
Confidence 589999999998654432 2334457889999999999988764 457999999987664322
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
+...|+.||++.+.+++.++.+ .|+++++++||.|..+..... ..........
T Consensus 157 -~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~--------------~~~~~~~~~~--------- 212 (262)
T 3ksu_A 157 -FYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQ--------------ETKESTAFHK--------- 212 (262)
T ss_dssp -CCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTC--------------C------------------
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccccc--------------CchHHHHHHH---------
Confidence 2568999999999999999988 489999999999876421000 0000000000
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccH
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSV 341 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~ 341 (413)
.......+..++|+|+++++++.......|+++++.+|.....
T Consensus 213 -------~~~~~~r~~~pedvA~~v~~L~s~~~~itG~~i~vdGg~~~~~ 255 (262)
T 3ksu_A 213 -------SQAMGNQLTKIEDIAPIIKFLTTDGWWINGQTIFANGGYTTRE 255 (262)
T ss_dssp ----------CCCCSCCGGGTHHHHHHHHTTTTTCCSCEEEESTTCCCC-
T ss_pred -------hcCcccCCCCHHHHHHHHHHHcCCCCCccCCEEEECCCccCCC
Confidence 1112235788999999999998763333568999987765443
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=215.29 Aligned_cols=226 Identities=13% Similarity=0.052 Sum_probs=163.1
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCC-chhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN-IGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
++.+ |+||||||+|+||++++++|+++|++|++++|..... +...+.+.+ .+.++.++.+|++|.+++.+++++
T Consensus 26 ~l~~-k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~ 101 (271)
T 4iin_A 26 QFTG-KNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEE---KGYKAAVIKFDAASESDFIEAIQTI 101 (271)
T ss_dssp CCSC-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHHH
Confidence 4556 9999999999999999999999999999998743221 222222222 246799999999999999988865
Q ss_pred ----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+..... ..++.+..+++|+.++.+ +++.+++.+.++||++||...+..
T Consensus 102 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~--------- 172 (271)
T 4iin_A 102 VQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERG--------- 172 (271)
T ss_dssp HHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC---------
T ss_pred HHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCC---------
Confidence 48999999999865433 223445678899999655 555556667789999999776532
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
..+...|+.||++.+.+++.++.+ .|+++++++||.|.++... .+.+.......
T Consensus 173 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~---------------~~~~~~~~~~~------ 229 (271)
T 4iin_A 173 --NMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNA---------------NLKDELKADYV------ 229 (271)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC---------------------------CG------
T ss_pred --CCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchh---------------hhcHHHHHHHH------
Confidence 233678999999999999999888 7899999999999876421 11111111111
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
.......+.+++|+|++++.++.... ...++++++.+|.
T Consensus 230 ----------~~~~~~~~~~p~dvA~~i~~l~s~~~~~itG~~i~vdGG~ 269 (271)
T 4iin_A 230 ----------KNIPLNRLGSAKEVAEAVAFLLSDHSSYITGETLKVNGGL 269 (271)
T ss_dssp ----------GGCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred ----------hcCCcCCCcCHHHHHHHHHHHhCCCcCCCcCCEEEeCCCe
Confidence 11122457899999999999987543 2356899998774
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=214.47 Aligned_cols=227 Identities=15% Similarity=0.136 Sum_probs=162.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhc-CCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELF-PEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
|++|||||+|+||++++++|+++|++|++++|.... ..+.+.+.. ..+.++.++.+|++|++++++++++ .
T Consensus 8 k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 84 (264)
T 3i4f_A 8 RHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTT---AMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFG 84 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChH---HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999998764322 222222221 1235799999999999999988865 4
Q ss_pred CCcEEEEcCccc--CccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVA--YVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 145 ~~dvvi~~Ag~~--~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
++|+||||||+. .... ..++.+..+++|+.++.++++++ ++.+.++||++||...++.. +.
T Consensus 85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~---------~~ 155 (264)
T 3i4f_A 85 KIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAP---------GW 155 (264)
T ss_dssp CCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCC---------CC
T ss_pred CCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccC---------CC
Confidence 899999999942 2221 22334567899999977666665 67777899999997544221 22
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
.+...|+.||++.+.+++.++.+ .|+++++++||.|+++... ...+.......
T Consensus 156 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~--------- 211 (264)
T 3i4f_A 156 IYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKE---------------ATIQEARQLKE--------- 211 (264)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGS---------------CCHHHHHHC-----------
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccch---------------hccHHHHHHHh---------
Confidence 34678999999999999999888 7899999999999987532 22222221111
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCccc
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRS 340 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s 340 (413)
.......+.+++|+|+++++++.... ...++++++.+|....
T Consensus 212 -------~~~p~~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdGG~~~~ 254 (264)
T 3i4f_A 212 -------HNTPIGRSGTGEDIARTISFLCEDDSDMITGTIIEVTGAVDVI 254 (264)
T ss_dssp -------------CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESCSCCCC
T ss_pred -------hcCCCCCCcCHHHHHHHHHHHcCcccCCCCCcEEEEcCceeec
Confidence 11122357899999999999998543 2346899998886543
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-27 Score=215.69 Aligned_cols=232 Identities=16% Similarity=0.085 Sum_probs=167.2
Q ss_pred CCCceEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGas--G~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+ |++|||||+ |+||++++++|+++|++|++++|+.+ .++..+.+.+.. ..+.++.+|++|++++++++++
T Consensus 6 l~~-k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~ 80 (261)
T 2wyu_A 6 LSG-KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEAL---GGALLFRADVTQDEELDALFAGV 80 (261)
T ss_dssp CTT-CEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHT---TCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHHHH
Confidence 446 899999999 99999999999999999999988642 222333333221 2478899999999999888764
Q ss_pred ----CCCcEEEEcCcccCc----c----CCcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYV----G----ESTLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~----~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|+||||||+... . ...++.+..+++|+.++.++++++... +.++||++||...+..
T Consensus 81 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------- 153 (261)
T 2wyu_A 81 KEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKV------- 153 (261)
T ss_dssp HHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSB-------
T ss_pred HHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCC-------
Confidence 489999999997642 1 123345568899999999999998765 2369999999776532
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
..+..+|+.||++.+.+++.++.+ .|+++++|+||.|+++..... ...+..........+
T Consensus 154 ----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-------------~~~~~~~~~~~~~~p 216 (261)
T 2wyu_A 154 ----VPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSI-------------PGFTKMYDRVAQTAP 216 (261)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGC-------------TTHHHHHHHHHHHST
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhc-------------cccHHHHHHHHhcCC
Confidence 223668999999999999999887 489999999999998742110 011222222222112
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcccHHH
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSVKE 343 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~~e 343 (413)
...+.+++|+|+++++++.... ...+++|++.+|...+..+
T Consensus 217 ----------------~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~~~~~ 258 (261)
T 2wyu_A 217 ----------------LRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGME 258 (261)
T ss_dssp ----------------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGBC--
T ss_pred ----------------CCCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCCccccCCC
Confidence 1246789999999999987532 2245799998887665444
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=213.74 Aligned_cols=239 Identities=11% Similarity=0.022 Sum_probs=163.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+....+++.+.+........++.++.+|++|++++++++++
T Consensus 4 l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (280)
T 1xkq_A 4 FSN-KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 82 (280)
T ss_dssp TTT-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHH
Confidence 345 8999999999999999999999999999998754333333333322111011789999999999999888764
Q ss_pred --CCCcEEEEcCcccCccC--------CcCChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE--------STLDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~--------~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++. +.+ ++||++||...+...
T Consensus 83 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~------ 155 (280)
T 1xkq_A 83 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQA------ 155 (280)
T ss_dssp HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSC------
T ss_pred hcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCC------
Confidence 47999999999764322 223345678899999776665554 445 899999998776432
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
..+...|+.||++.+.+++.++.+ +|+++++|+||.|.++...... .+. ..+.-..........
T Consensus 156 ----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~----~~~--~~~~~~~~~~~~~~~--- 222 (280)
T 1xkq_A 156 ----QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMG----MPD--QASQKFYNFMASHKE--- 222 (280)
T ss_dssp ----CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTT----CCH--HHHHHHHHHHHHCTT---
T ss_pred ----CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccc----ccc--ccccchHHHHHHHHc---
Confidence 123678999999999999999876 6999999999999987311000 000 000000011111111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc--CCCCccEEEecCCCcc
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA--QPKKVGIYNVGTGKGR 339 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~--~~~~~~~yni~~~~~~ 339 (413)
......+.+++|+|+++++++... ....++++++.+|...
T Consensus 223 -------------~~p~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdgG~~~ 264 (280)
T 1xkq_A 223 -------------CIPIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTSL 264 (280)
T ss_dssp -------------TCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGG
T ss_pred -------------CCCCCCCCCHHHHHHHHHHhcCcccccCccCCeEEECCCccc
Confidence 111235789999999999998653 2234579999877543
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-26 Score=210.43 Aligned_cols=224 Identities=15% Similarity=0.134 Sum_probs=163.5
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+|+||++++++|+++|++|++++|+....++.. +++ +.++.++.+|++|++++++++++
T Consensus 10 ~~~-k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~---~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (265)
T 2o23_A 10 VKG-LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQA---KKL---GNNCVFAPADVTSEKDVQTALALAKG 82 (265)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHH---HHH---CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHH---HHh---CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 456 89999999999999999999999999999998654433332 222 35789999999999999988864
Q ss_pred --CCCcEEEEcCcccCccC----------CcCChHHHHHHHHHHHHHHHHHHHHc----------CCCEEEEeccceecC
Q 015080 144 --NAFDAVMHFAAVAYVGE----------STLDPLKYYHNITSNTLVVLESMARH----------GVDTLIYSSTCATYG 201 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----------~~~~~~~~~~~n~~~~~~ll~~~~~~----------~~~~iV~~SS~~~~~ 201 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++... +.++||++||...+.
T Consensus 83 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 162 (265)
T 2o23_A 83 KFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE 162 (265)
T ss_dssp HHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred HCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcC
Confidence 48999999999864432 22335567889999988887776654 568999999988764
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHH
Q 015080 202 EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACF 278 (413)
Q Consensus 202 ~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (413)
.. .+...|+.||++.+.+++.++.+ .|+++++|+||.+.++.... +.....
T Consensus 163 ~~-----------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---------------~~~~~~ 216 (265)
T 2o23_A 163 GQ-----------VGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS---------------LPEKVC 216 (265)
T ss_dssp CC-----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-------------------------
T ss_pred CC-----------CCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccc---------------cCHHHH
Confidence 32 23678999999999999998877 58999999999998874210 000001
Q ss_pred HHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcc
Q 015080 279 DAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGR 339 (413)
Q Consensus 279 ~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~ 339 (413)
.......+ . ...+++++|+|++++.++... ...++++++.+|...
T Consensus 217 ~~~~~~~~---~------------~~~~~~~~dva~~~~~l~~~~-~~~G~~i~vdgG~~~ 261 (265)
T 2o23_A 217 NFLASQVP---F------------PSRLGDPAEYAHLVQAIIENP-FLNGEVIRLDGAIRM 261 (265)
T ss_dssp CHHHHTCS---S------------SCSCBCHHHHHHHHHHHHHCT-TCCSCEEEESTTCCC
T ss_pred HHHHHcCC---C------------cCCCCCHHHHHHHHHHHhhcC-ccCceEEEECCCEec
Confidence 11111111 0 024789999999999998743 334579999877544
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-27 Score=212.60 Aligned_cols=222 Identities=12% Similarity=0.064 Sum_probs=159.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEE-ecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIV-DNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
|+||||||+||||++++++|+++|++|+++ +|+....+...+.+... +.++.++.+|++|++++++++++ .
T Consensus 2 k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (244)
T 1edo_A 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY---GGQAITFGGDVSKEADVEAMMKTAIDAWG 78 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH---TCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc---CCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 789999999999999999999999999985 55433222233333322 35788999999999999988864 4
Q ss_pred CCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
++|+||||||+..... ..++.+..+++|+.++.++++++. +.+.++||++||...+... .+
T Consensus 79 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------~~ 147 (244)
T 1edo_A 79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGN-----------IG 147 (244)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC-----------TT
T ss_pred CCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCC-----------CC
Confidence 7999999999865432 223445678999999776665554 4577899999997654321 23
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
...|+.||++.+.+++.++.+ .|+++++++||.++++... .+.+..........+
T Consensus 148 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~------- 205 (244)
T 1edo_A 148 QANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTA---------------KLGEDMEKKILGTIP------- 205 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHH---------------TTCHHHHHHHHTSCT-------
T ss_pred CccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhh---------------hcChHHHHHHhhcCC-------
Confidence 678999999999999999877 6899999999999986321 111122222222111
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhcC--CCCccEEEecCCC
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERAQ--PKKVGIYNVGTGK 337 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~--~~~~~~yni~~~~ 337 (413)
...+++++|+|++++.++..+. ...+++|++.+|.
T Consensus 206 ---------~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG~ 242 (244)
T 1edo_A 206 ---------LGRTGQPENVAGLVEFLALSPAASYITGQAFTIDGGI 242 (244)
T ss_dssp ---------TCSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTTT
T ss_pred ---------CCCCCCHHHHHHHHHHHhCCCccCCcCCCEEEeCCCc
Confidence 1357899999999999985321 2235799998764
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=214.27 Aligned_cols=227 Identities=15% Similarity=0.056 Sum_probs=166.8
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++++++++
T Consensus 32 l~~-k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~ 107 (279)
T 3ctm_A 32 LKG-KVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTY---GVHSKAYKCNISDPKSVEETISQQEK 107 (279)
T ss_dssp CTT-CEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHH---CSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcceEEEeecCCHHHHHHHHHHHHH
Confidence 456 89999999999999999999999999999998765544444444332 35789999999999999888865
Q ss_pred --CCCcEEEEcCcccCc-cCC-----cCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYV-GES-----TLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~-~~~-----~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+... ... .++.+..+++|+.+ ++++++.+++.+.++||++||...+..
T Consensus 108 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~--------- 178 (279)
T 3ctm_A 108 DFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIV--------- 178 (279)
T ss_dssp HHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC---------
T ss_pred HhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccC---------
Confidence 469999999997654 221 22344578899999 678888888888899999999775432
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
.+..+..+|+.||++.+.+++.++.+ .+ ++++++||.+.++... ...+..........+
T Consensus 179 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~p-- 240 (279)
T 3ctm_A 179 NIPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITD---------------FASKDMKAKWWQLTP-- 240 (279)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTS---------------SCCHHHHHHHHHHST--
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCcccccc---------------ccChHHHHHHHHhCC--
Confidence 01234678999999999999999887 46 9999999999887421 001111111111111
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...+++++|+|++++.++.... ...++++++.+|..
T Consensus 241 --------------~~~~~~~~dvA~~~~~l~s~~~~~~tG~~i~vdgG~~ 277 (279)
T 3ctm_A 241 --------------LGREGLTQELVGGYLYLASNASTFTTGSDVVIDGGYT 277 (279)
T ss_dssp --------------TCSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESTTCC
T ss_pred --------------ccCCcCHHHHHHHHHHHhCccccCccCCEEEECCCee
Confidence 1247899999999999987542 23457999987754
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=212.38 Aligned_cols=223 Identities=16% Similarity=0.112 Sum_probs=159.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|. .++..+. + +..+.++.+|++|+++++++++.
T Consensus 6 ~l~~-k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~---~~~~~~~---~---~~~~~~~~~D~~~~~~v~~~~~~~~ 75 (257)
T 3tl3_A 6 EIRD-AVAVVTGGASGLGLATTKRLLDAGAQVVVLDIR---GEDVVAD---L---GDRARFAAADVTDEAAVASALDLAE 75 (257)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESS---CHHHHHH---T---CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred eecC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCc---hHHHHHh---c---CCceEEEECCCCCHHHHHHHHHHHH
Confidence 4556 999999999999999999999999999999872 2222222 2 35799999999999999888754
Q ss_pred --CCCcEEEEcCcccCcc--------CCcCChHHHHHHHHHHHHHHHHHHHH------------cCCCEEEEeccceecC
Q 015080 144 --NAFDAVMHFAAVAYVG--------ESTLDPLKYYHNITSNTLVVLESMAR------------HGVDTLIYSSTCATYG 201 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~--------~~~~~~~~~~~~n~~~~~~ll~~~~~------------~~~~~iV~~SS~~~~~ 201 (413)
.++|+||||||+.... ...++.+..+++|+.++.++++++.. .+.++||++||...+.
T Consensus 76 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 155 (257)
T 3tl3_A 76 TMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFD 155 (257)
T ss_dssp HHSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--C
T ss_pred HhCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcC
Confidence 4899999999975431 23344566889999997777666553 3456999999987653
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHH
Q 015080 202 EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACF 278 (413)
Q Consensus 202 ~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (413)
.. .+...|+.||++.+.+++.++.+ .|+++++|+||.|.++... .+.+...
T Consensus 156 ~~-----------~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~---------------~~~~~~~ 209 (257)
T 3tl3_A 156 GQ-----------IGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLA---------------SLPEEAR 209 (257)
T ss_dssp CH-----------HHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC------------------CHHHH
T ss_pred CC-----------CCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhh---------------hccHHHH
Confidence 22 22568999999999999999887 6899999999999887422 1122222
Q ss_pred HHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCccc
Q 015080 279 DAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRS 340 (413)
Q Consensus 279 ~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s 340 (413)
.......+ . ...+.+++|+|+++++++.. ....++++++.+|..++
T Consensus 210 ~~~~~~~~---~------------~~r~~~p~dva~~v~~l~s~-~~itG~~i~vdGG~~~~ 255 (257)
T 3tl3_A 210 ASLGKQVP---H------------PSRLGNPDEYGALAVHIIEN-PMLNGEVIRLDGAIRMA 255 (257)
T ss_dssp HHHHHTSS---S------------SCSCBCHHHHHHHHHHHHHC-TTCCSCEEEESTTC---
T ss_pred HHHHhcCC---C------------CCCccCHHHHHHHHHHHhcC-CCCCCCEEEECCCccCC
Confidence 22222211 1 02578999999999999986 33456899998876544
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=212.10 Aligned_cols=227 Identities=15% Similarity=0.067 Sum_probs=162.7
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhh-hhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVL-QELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+....++..+.+ ... +.++.++.+|++|++++++++++
T Consensus 18 ~l~~-k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~ 93 (267)
T 1vl8_A 18 DLRG-RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY---GVETMAFRCDVSNYEEVKKLLEAV 93 (267)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH---CCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc---CCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4556 99999999999999999999999999999987543333333333 111 35688999999999999888764
Q ss_pred ----CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccce-ecCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCA-TYGEPEKMPITE 210 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~-~~~~~~~~~~~e 210 (413)
.++|+||||||+...... .++.+..+++|+.++.+++++ |++.+.++||++||.. .+.
T Consensus 94 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~--------- 164 (267)
T 1vl8_A 94 KEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV--------- 164 (267)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC---------
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhcc---------
Confidence 489999999998654322 223455788999997666554 4556678999999976 321
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchH--HHHHHHHhccc
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRIS--GACFDAARGII 285 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 285 (413)
+..+...|+.||++.+.+++.++.+ .|+++++|+||.+.++... .+. +..........
T Consensus 165 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~---------------~~~~~~~~~~~~~~~~ 227 (267)
T 1vl8_A 165 --TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTE---------------AVFSDPEKLDYMLKRI 227 (267)
T ss_dssp --CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTH---------------HHHTCHHHHHHHHHTC
T ss_pred --CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcccccc---------------ccccChHHHHHHHhhC
Confidence 2234678999999999999999887 5899999999999876411 110 11111111111
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
+ ...+++.+|+|+++++++.... ...++++.+.+|..
T Consensus 228 p----------------~~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~~ 265 (267)
T 1vl8_A 228 P----------------LGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGWT 265 (267)
T ss_dssp T----------------TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred C----------------CCCCcCHHHHHHHHHHHcCccccCCcCCeEEECCCCC
Confidence 1 1246889999999999987542 23457999977743
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=210.29 Aligned_cols=213 Identities=15% Similarity=0.120 Sum_probs=161.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----CCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----NAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~~~ 146 (413)
|+||||||+|+||++++++|+++|++|++++|+.. . ..+.++.+|++|++++++++++ .++
T Consensus 3 k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~--------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 67 (242)
T 1uay_A 3 RSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G--------------EDLIYVEGDVTREEDVRRAVARAQEEAPL 67 (242)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S--------------SSSEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c--------------cceEEEeCCCCCHHHHHHHHHHHHhhCCc
Confidence 89999999999999999999999999999988654 1 3458899999999999988864 389
Q ss_pred cEEEEcCcccCccCCc----C----ChHHHHHHHHHHHHHHHHHHHHc----C------CCEEEEeccceecCCCCCCCC
Q 015080 147 DAVMHFAAVAYVGEST----L----DPLKYYHNITSNTLVVLESMARH----G------VDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~----~----~~~~~~~~n~~~~~~ll~~~~~~----~------~~~iV~~SS~~~~~~~~~~~~ 208 (413)
|+||||||........ + +.+..+++|+.++.++++++.+. + .++||++||..++....
T Consensus 68 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---- 143 (242)
T 1uay_A 68 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQI---- 143 (242)
T ss_dssp EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCT----
T ss_pred eEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCC----
Confidence 9999999976543221 1 45678899999998888877653 1 13999999988775322
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
+...|+.||++.+.+++.++.+ .|++++++|||.|+++... .+............
T Consensus 144 -------~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~ 201 (242)
T 1uay_A 144 -------GQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQ---------------GLPEKAKASLAAQV 201 (242)
T ss_dssp -------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHH---------------TSCHHHHHHHHTTC
T ss_pred -------CCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhh---------------ccchhHHHHHHhhC
Confidence 3678999999999999998877 4899999999999987421 11122222222222
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCccc
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRS 340 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s 340 (413)
+ + ...+++++|+|++++.++.. ....+++|++.+|..++
T Consensus 202 ~-~--------------~~~~~~~~dva~~~~~l~~~-~~~~G~~~~v~gG~~~~ 240 (242)
T 1uay_A 202 P-F--------------PPRLGRPEEYAALVLHILEN-PMLNGEVVRLDGALRMA 240 (242)
T ss_dssp C-S--------------SCSCCCHHHHHHHHHHHHHC-TTCCSCEEEESTTCCCC
T ss_pred C-C--------------cccCCCHHHHHHHHHHHhcC-CCCCCcEEEEcCCeecC
Confidence 1 0 02478999999999999986 33345799998886543
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=211.06 Aligned_cols=228 Identities=15% Similarity=0.104 Sum_probs=164.1
Q ss_pred CCCCceEEEEEcCCC-hHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 66 HEEGVTHVLVTGGAG-YIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG-~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
.+.+ |++|||||+| +||++++++|+++|++|++++|+....++..+.+.+. .+.++.++.+|++|.+++++++++
T Consensus 19 ~l~~-k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (266)
T 3o38_A 19 LLKG-KVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADL--GLGRVEAVVCDVTSTEAVDALITQT 95 (266)
T ss_dssp TTTT-CEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--CSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc--CCCceEEEEeCCCCHHHHHHHHHHH
Confidence 3556 9999999987 7999999999999999999987655444444444332 125799999999999999988865
Q ss_pred ----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHH----c-CCCEEEEeccceecCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMAR----H-GVDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++.. . +.++||++||...+..
T Consensus 96 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~-------- 167 (266)
T 3o38_A 96 VEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRA-------- 167 (266)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCC--------
T ss_pred HHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCC--------
Confidence 48999999999865433 2233455788999997776666544 3 5679999999776532
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
..+...|+.||++.+.+++.++.+ .|+++++|+||.|.++..... ..........
T Consensus 168 ---~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--------------~~~~~~~~~~----- 225 (266)
T 3o38_A 168 ---QHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKT--------------SSSELLDRLA----- 225 (266)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-----------------------------------
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhcc--------------CcHHHHHHHH-----
Confidence 234778999999999999999887 689999999999988642110 0001111111
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCC
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGK 337 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~ 337 (413)
.......+.+++|+|+++++++... ....++++++.+|.
T Consensus 226 -----------~~~~~~r~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG~ 265 (266)
T 3o38_A 226 -----------SDEAFGRAAEPWEVAATIAFLASDYSSYMTGEVVSVSSQR 265 (266)
T ss_dssp ------------CCTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESSCC
T ss_pred -----------hcCCcCCCCCHHHHHHHHHHHcCccccCccCCEEEEcCCc
Confidence 1222346789999999999998753 33356899998764
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=214.10 Aligned_cols=230 Identities=12% Similarity=0.049 Sum_probs=165.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|+++++. +.+...+...++...+.++.++.+|++|.+++++++++
T Consensus 23 ~~~-k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 99 (269)
T 3gk3_A 23 QAK-RVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSE--RNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLA 99 (269)
T ss_dssp -CC-CEEEETTTTSHHHHHHHHHHHTTTCEEEEEECS--CHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred hcC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC--chHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 445 899999999999999999999999999998742 22333333333333356799999999999999988865
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++. +++.+.++||++||...+...
T Consensus 100 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 169 (269)
T 3gk3_A 100 DFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGA---------- 169 (269)
T ss_dssp HHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC----------
T ss_pred HcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCC----------
Confidence 48999999999865433 2233455788999996665554 455677899999997765332
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+...|+.||++.+.+++.++.+ .|+++++++||.|.++.... +...... ....
T Consensus 170 -~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~---------------~~~~~~~---~~~~---- 226 (269)
T 3gk3_A 170 -FGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEA---------------VPQDVLE---AKIL---- 226 (269)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC-------------------------CCSG----
T ss_pred -CCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhh---------------hchhHHH---HHhh----
Confidence 23678999999999999999887 58999999999999875321 1110000 0000
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCccc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRS 340 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s 340 (413)
.......+.+++|+|+++++++.... ...++++++.+|..++
T Consensus 227 --------~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~~~s 269 (269)
T 3gk3_A 227 --------PQIPVGRLGRPDEVAALIAFLCSDDAGFVTGADLAINGGMHMS 269 (269)
T ss_dssp --------GGCTTSSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTSCCC
T ss_pred --------hcCCcCCccCHHHHHHHHHHHhCCCcCCeeCcEEEECCCEeCc
Confidence 11122356789999999999987543 2356899998886553
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=213.76 Aligned_cols=235 Identities=12% Similarity=0.124 Sum_probs=168.0
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |+||||||+||||++++++|+++|++|++++|+........+.+.+.. +.++.++.+|++|.+++++++++
T Consensus 11 ~~~~-k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~ 87 (265)
T 1h5q_A 11 SFVN-KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF--GVKTKAYQCDVSNTDIVTKTIQQID 87 (265)
T ss_dssp CCTT-EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCC-CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhc--CCeeEEEEeeCCCHHHHHHHHHHHH
Confidence 3456 899999999999999999999999999999986554433333332221 25789999999999999888765
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHH----HcC-CCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMA----RHG-VDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++. +.+ .++||++||..++..... +.
T Consensus 88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----~~ 163 (265)
T 1h5q_A 88 ADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS----SL 163 (265)
T ss_dssp HHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE----ET
T ss_pred HhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc----cc
Confidence 46999999999865432 223345578899999877777654 333 479999999876532211 01
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
.+..+...|+.||++.+.+++.++.+ .|+++++++||.|+++... .+.+..........+
T Consensus 164 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~-- 226 (265)
T 1h5q_A 164 NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTA---------------HMDKKIRDHQASNIP-- 226 (265)
T ss_dssp TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGG---------------GSCHHHHHHHHHTCT--
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccc---------------ccchhHHHHHHhcCc--
Confidence 22344678999999999999999877 5899999999999987421 111222222221111
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...+++++|+|++++.++.... ...+++|++.+|..
T Consensus 227 --------------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 263 (265)
T 1h5q_A 227 --------------LNRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGGQL 263 (265)
T ss_dssp --------------TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTTGG
T ss_pred --------------ccCCCCHHHHHHHHHhhccCchhcCcCcEEEecCCEe
Confidence 1247899999999999987542 23457999988754
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=213.45 Aligned_cols=224 Identities=16% Similarity=0.147 Sum_probs=155.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+||||||+|+||+++|++|+++|++|+++++ ++.+...+...++...+.++.++.+|++|.+++++++++ .+
T Consensus 27 k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 104 (272)
T 4e3z_A 27 PVVLVTGGSRGIGAAVCRLAARQGWRVGVNYA--ANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFGR 104 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEES--SCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcC--CChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999999988743 222222222222222346899999999999999988865 48
Q ss_pred CcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHHHHHHHHc-------CCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVVLESMARH-------GVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 146 ~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~~~~~-------~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
+|+||||||+... .. ..++.+..+++|+.++.++++++... +.++||++||.+.+....
T Consensus 105 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 175 (272)
T 4e3z_A 105 LDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSA--------- 175 (272)
T ss_dssp CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCT---------
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCC---------
Confidence 9999999998653 21 23345568899999988777666543 357999999977653221
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.|.++.... ...+.......
T Consensus 176 -~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--------------~~~~~~~~~~~-------- 232 (272)
T 4e3z_A 176 -TQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHAS--------------GGLPDRAREMA-------- 232 (272)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC---------------------------------------
T ss_pred -CCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccc--------------cCChHHHHHHh--------
Confidence 12567999999999999999887 48999999999999875221 00111111111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTG 336 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~ 336 (413)
.......+.+++|+|+++++++..... ..+++|++.+|
T Consensus 233 --------~~~~~~~~~~~edvA~~i~~l~s~~~~~~tG~~i~vdgG 271 (272)
T 4e3z_A 233 --------PSVPMQRAGMPEEVADAILYLLSPSASYVTGSILNVSGG 271 (272)
T ss_dssp ---------CCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --------hcCCcCCCcCHHHHHHHHHHHhCCccccccCCEEeecCC
Confidence 111223467899999999999875432 34589999776
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-27 Score=217.76 Aligned_cols=233 Identities=14% Similarity=0.068 Sum_probs=168.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+++ |++|||||+|+||.+++++|+++|++|++++|+....++..+.+.... +.++.++.+|++|++++++++++
T Consensus 24 ~l~~-k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~ 100 (277)
T 4fc7_A 24 LLRD-KVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT--GRRCLPLSMDVRAPPAVMAAVDQAL 100 (277)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHH--SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 3556 999999999999999999999999999999876544333333333221 35789999999999999888865
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++ ++.+.++||++||...+...
T Consensus 101 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 171 (277)
T 4fc7_A 101 KEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQ--------- 171 (277)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHTC---------
T ss_pred HHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCC---------
Confidence 58999999999754432 23345567889999977776665 44556899999998766332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.|.++...... ..............+
T Consensus 172 --~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~------------~~~~~~~~~~~~~~p--- 234 (277)
T 4fc7_A 172 --ALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRL------------GGPQASLSTKVTASP--- 234 (277)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHH------------SCCHHHHHHHHHTST---
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhc------------cCCHHHHHHHhccCC---
Confidence 23678999999999999999888 5899999999999986310000 000111122211111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCccc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKGRS 340 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~~s 340 (413)
...+..++|+|+++++++... ....++++++.+|..++
T Consensus 235 -------------~~r~~~p~dvA~~v~fL~s~~~~~itG~~i~vdGG~~~~ 273 (277)
T 4fc7_A 235 -------------LQRLGNKTEIAHSVLYLASPLASYVTGAVLVADGGAWLT 273 (277)
T ss_dssp -------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTHHHH
T ss_pred -------------CCCCcCHHHHHHHHHHHcCCccCCcCCCEEEECCCcccC
Confidence 234678999999999998753 22356899998876554
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-26 Score=208.80 Aligned_cols=226 Identities=15% Similarity=0.098 Sum_probs=158.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+.. +...+.+.+. +.++.++.+|++|++++++++++
T Consensus 5 l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (249)
T 2ew8_A 5 LKD-KLAVITGGANGIGRAIAERFAVEGADIAIADLVPA--PEAEAAIRNL---GRRVLTVKCDVSQPGDVEAFGKQVIS 78 (249)
T ss_dssp TTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHT---TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCch--hHHHHHHHhc---CCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 446 89999999999999999999999999999987541 2222233322 35789999999999999888754
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHH----HHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTL----VVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~----~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..++.+..+++|+.++. .+++.|++.+.++||++||...+...
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 148 (249)
T 2ew8_A 79 TFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKI---------- 148 (249)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCC----------
Confidence 58999999999865432 22334557889999954 45555777777899999998876432
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.|.++..... ..... ..... . +.
T Consensus 149 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--------------~~~~~-~~~~~--~-~~- 208 (249)
T 2ew8_A 149 -EAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEAS--------------ALSAM-FDVLP--N-ML- 208 (249)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC-----------------------------------C-TT-
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhc--------------cccch-hhHHH--H-hh-
Confidence 23678999999999999999887 589999999999998742100 00000 00000 0 00
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
.....+.+++|+|+++++++.... ...++++++.+|..
T Consensus 209 ----------~~~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdGG~~ 247 (249)
T 2ew8_A 209 ----------QAIPRLQVPLDLTGAAAFLASDDASFITGQTLAVDGGMV 247 (249)
T ss_dssp ----------SSSCSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESSSCC
T ss_pred ----------CccCCCCCHHHHHHHHHHHcCcccCCCCCcEEEECCCcc
Confidence 011347899999999999987532 23457999977643
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-26 Score=210.47 Aligned_cols=228 Identities=13% Similarity=0.088 Sum_probs=167.2
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+....+++.+.+.+. +.++.++.+|++|++++++++++
T Consensus 29 ~l~g-k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~v~~~~~~~~ 104 (276)
T 3r1i_A 29 DLSG-KRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV---GGKALPIRCDVTQPDQVRGMLDQMT 104 (276)
T ss_dssp CCTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 4556 99999999999999999999999999999998655555444444432 45789999999999999988865
Q ss_pred ---CCCcEEEEcCcccCccCCc----CChHHHHHHHHHHHHHHHHH----HHHcC-CCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLVVLES----MARHG-VDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~ll~~----~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+....... ++.+..+++|+.++.+++++ +++.+ .++||++||...+...
T Consensus 105 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~-------- 176 (276)
T 3r1i_A 105 GELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIIN-------- 176 (276)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC--------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccC--------
Confidence 4899999999987554322 23445678999996665555 44554 3799999997765321
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
+..+...|+.||++.+.+++.++.+ .|+++++|+||.|.++... .. +..........+
T Consensus 177 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~---------------~~-~~~~~~~~~~~p-- 237 (276)
T 3r1i_A 177 -IPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVE---------------PL-ADYHALWEPKIP-- 237 (276)
T ss_dssp -CSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTG---------------GG-GGGHHHHGGGST--
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccc---------------cc-hHHHHHHHhcCC--
Confidence 1123678999999999999999988 6899999999999987521 11 111122222111
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...+..++|+|+++++++.... ...++++++.+|..
T Consensus 238 --------------~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~~ 274 (276)
T 3r1i_A 238 --------------LGRMGRPEELTGLYLYLASAASSYMTGSDIVIDGGYT 274 (276)
T ss_dssp --------------TSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred --------------CCCCcCHHHHHHHHHHHcCccccCccCcEEEECcCcc
Confidence 1246789999999999987543 23568999987754
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-26 Score=213.27 Aligned_cols=234 Identities=13% Similarity=0.098 Sum_probs=164.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+... ..+...++...+.++.++.+|++|++++++++++
T Consensus 26 ~~~-k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~---~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (283)
T 3v8b_A 26 QPS-PVALITGAGSGIGRATALALAADGVTVGALGRTRTE---VEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVL 101 (283)
T ss_dssp -CC-CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHH---HHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 445 899999999999999999999999999999875433 3333334434456899999999999999988865
Q ss_pred --CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+... .. ..++.+..+++|+.++.++++++ ++.+.++||++||...+.. .
T Consensus 102 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~---------~ 172 (283)
T 3v8b_A 102 KFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRT---------F 172 (283)
T ss_dssp HHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTB---------C
T ss_pred HhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccC---------C
Confidence 589999999998543 22 22334567899999966655554 6777789999999776531 0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
+..+..+|+.||++.+.+++.++.+ .|+++++|+||.|..+...... .... .... .+ ..
T Consensus 173 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~------------~~~~---~~~~--~~-~~ 234 (283)
T 3v8b_A 173 TTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTK------------LRHE---EETA--IP-VE 234 (283)
T ss_dssp CSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTT------------BCCH---HHHS--CC-CB
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccc------------cccc---hhhh--hh-hh
Confidence 2234678999999999999999988 6899999999999987532110 0000 0000 00 00
Q ss_pred EecccccCCCCcee--eecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCV--RDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~--~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
... ..... ..+..++|+|+++++++.... ...|+++++.+|.
T Consensus 235 ~~~------~~~p~~~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~ 279 (283)
T 3v8b_A 235 WPK------GQVPITDGQPGRSEDVAELIRFLVSERARHVTGSPVWIDGGQ 279 (283)
T ss_dssp CTT------CSCGGGTTCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred hhh------hcCccccCCCCCHHHHHHHHHHHcCccccCCcCCEEEECcCc
Confidence 000 11111 356789999999999987543 2356899997764
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=214.35 Aligned_cols=235 Identities=13% Similarity=0.078 Sum_probs=169.7
Q ss_pred CCCCceEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 66 HEEGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 66 ~~~~~k~vlITGas--G~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
...+ |+||||||+ |+||++++++|+++|++|++++|+.+..+.+ +.+.+. ...+.++.+|++|++++++++++
T Consensus 11 ~~~~-k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~ 85 (271)
T 3ek2_A 11 FLDG-KRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRI-TEFAAE---FGSELVFPCDVADDAQIDALFAS 85 (271)
T ss_dssp TTTT-CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHHHH---TTCCCEEECCTTCHHHHHHHHHH
T ss_pred ccCC-CEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHH-HHHHHH---cCCcEEEECCCCCHHHHHHHHHH
Confidence 4456 999999998 9999999999999999999999864332222 222222 24588999999999999988865
Q ss_pred -----CCCcEEEEcCcccCc----c-----CCcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCC
Q 015080 144 -----NAFDAVMHFAAVAYV----G-----ESTLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMP 207 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~----~-----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~ 207 (413)
.++|+||||||+... . ...++....+++|+.++.++++++... ..++||++||...+..
T Consensus 86 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~----- 160 (271)
T 3ek2_A 86 LKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERA----- 160 (271)
T ss_dssp HHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSB-----
T ss_pred HHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccC-----
Confidence 489999999998653 1 122334567889999999999988764 2469999999876643
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcc
Q 015080 208 ITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGI 284 (413)
Q Consensus 208 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (413)
..+...|+.||++.+.+++.++.+ .|+++++++||.|.++..... ...+.........
T Consensus 161 ------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-------------~~~~~~~~~~~~~ 221 (271)
T 3ek2_A 161 ------IPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGI-------------KSFGKILDFVESN 221 (271)
T ss_dssp ------CTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCC-------------HHHHHHHHHHHHH
T ss_pred ------CCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcc-------------cchHHHHHHHHhc
Confidence 233678999999999999999887 589999999999998753210 1112223332222
Q ss_pred ccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCcccHHHHH
Q 015080 285 IAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKGRSVKEFV 345 (413)
Q Consensus 285 ~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~~s~~e~~ 345 (413)
.+ ...+..++|+|+++++++... ....++++++.+|...++.++.
T Consensus 222 ~~----------------~~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdgG~~~~~~~~~ 267 (271)
T 3ek2_A 222 SP----------------LKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGMA 267 (271)
T ss_dssp ST----------------TSSCCCHHHHHHHHHHHHSGGGTTCCSEEEEESTTGGGBCCCC-
T ss_pred CC----------------cCCCCCHHHHHHHHHHHcCcccCCeeeeEEEECCCeeeehhhhh
Confidence 22 124678999999999998753 3335689999998877765543
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-26 Score=216.24 Aligned_cols=243 Identities=13% Similarity=0.107 Sum_probs=166.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC---------CchhhhhhhhhcCCCCceEEEEccCCCHHH
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG---------NIGAVKVLQELFPEPGRLQFIYADLGDAKA 136 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 136 (413)
.+.+ |++|||||+|+||+++|+.|+++|++|++++|..+. .+.+.+....+...+.++.++.+|++|+++
T Consensus 43 ~l~g-k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~ 121 (317)
T 3oec_A 43 RLQG-KVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLAS 121 (317)
T ss_dssp TTTT-CEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred ccCC-CEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 3556 999999999999999999999999999999875321 222333333333335679999999999999
Q ss_pred HHHHhhc-----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHH----HHHcC-CCEEEEeccceecCC
Q 015080 137 VNKFFSE-----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLES----MARHG-VDTLIYSSTCATYGE 202 (413)
Q Consensus 137 ~~~~~~~-----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~-~~~iV~~SS~~~~~~ 202 (413)
+++++++ .++|+||||||+..... ..++.+..+++|+.++.+++++ +++.+ .++||++||...+..
T Consensus 122 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~~ 201 (317)
T 3oec_A 122 LQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRG 201 (317)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSSC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcCC
Confidence 9988865 58999999999875433 2233455788999997665555 45544 579999999877643
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHH
Q 015080 203 PEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFD 279 (413)
Q Consensus 203 ~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (413)
. .+...|+.||++.+.+++.++.+ .||++++|+||.|.++... ......
T Consensus 202 ~-----------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~-----------------~~~~~~ 253 (317)
T 3oec_A 202 A-----------PGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMAL-----------------NEKLLK 253 (317)
T ss_dssp C-----------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHH-----------------CHHHHH
T ss_pred C-----------CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCcccc-----------------chhhhh
Confidence 2 23678999999999999999988 5899999999999986310 000011
Q ss_pred HHhccccceeE--ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 280 AARGIIAGLKV--KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 280 ~~~~~~~~i~~--~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
........... ....+.. .......|++++|+|+++++++.... ...++++++.+|..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~pedvA~av~fL~s~~a~~itG~~i~vdGG~~ 314 (317)
T 3oec_A 254 MFLPHLENPTREDAAELFSQ-LTLLPIPWVEPEDVSNAVAWLASDEARYIHGAAIPVDGGQL 314 (317)
T ss_dssp HHCTTCSSCCHHHHHHHHTT-TCSSSSSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred hhhhhccccchhHHHHHHhh-hccCCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECcchh
Confidence 11000000000 0000000 01111568899999999999887543 23468999988754
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-26 Score=211.49 Aligned_cols=227 Identities=14% Similarity=0.055 Sum_probs=164.3
Q ss_pred CCCceEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGas--G~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+ |+||||||+ ||||++++++|+++|++|++++|+.. ..+..+.+.+.. ..+.++.+|++|++++++++++
T Consensus 19 l~~-k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~~ 93 (285)
T 2p91_A 19 LEG-KRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGF---GSDLVVKCDVSLDEDIKNLKKFL 93 (285)
T ss_dssp TTT-CEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHH
T ss_pred cCC-CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHH
Confidence 456 899999999 99999999999999999999988652 222333333221 2478899999999999888765
Q ss_pred ----CCCcEEEEcCcccCc----c----CCcCChHHHHHHHHHHHHHHHHHHHHc---CCCEEEEeccceecCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYV----G----ESTLDPLKYYHNITSNTLVVLESMARH---GVDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~----~----~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~iV~~SS~~~~~~~~~~~~ 208 (413)
.++|+||||||+... . ...++.+..+++|+.++.++++++... +.++||++||...+..
T Consensus 94 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~------ 167 (285)
T 2p91_A 94 EENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKV------ 167 (285)
T ss_dssp HHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSB------
T ss_pred HHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccC------
Confidence 489999999998643 1 122345568899999999988888754 2479999999776532
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
..+..+|+.||++.+.+++.++.+ .|+++++|+||.|.++..... ...+..........
T Consensus 168 -----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-------------~~~~~~~~~~~~~~ 229 (285)
T 2p91_A 168 -----VPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSI-------------TGFHLLMEHTTKVN 229 (285)
T ss_dssp -----CTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--C-------------TTHHHHHHHHHHHS
T ss_pred -----CCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcc-------------cchHHHHHHHHhcC
Confidence 223678999999999999999887 589999999999999753210 01122222222211
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
+ ...+.+++|+|+++++++.... ...+++|++.+|..
T Consensus 230 p----------------~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgg~~ 267 (285)
T 2p91_A 230 P----------------FGKPITIEDVGDTAVFLCSDWARAITGEVVHVDNGYH 267 (285)
T ss_dssp T----------------TSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred C----------------CCCCcCHHHHHHHHHHHcCCcccCCCCCEEEECCCcc
Confidence 1 1136789999999999987432 22457999987753
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-26 Score=211.98 Aligned_cols=230 Identities=15% Similarity=0.062 Sum_probs=169.8
Q ss_pred CCCCceEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 66 HEEGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG--~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
.+.+ |++|||||+| +||++++++|+++|++|++++|+.+..+.+.+...+. ..+.++.+|++|++++++++++
T Consensus 27 ~l~~-k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~ 101 (296)
T 3k31_A 27 LMEG-KKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL----GVKLTVPCDVSDAESVDNMFKV 101 (296)
T ss_dssp TTTT-CEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH----TCCEEEECCTTCHHHHHHHHHH
T ss_pred ccCC-CEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHH
Confidence 3556 9999999997 9999999999999999999998643333333333332 3578999999999999988865
Q ss_pred -----CCCcEEEEcCcccCc----c----CCcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCC
Q 015080 144 -----NAFDAVMHFAAVAYV----G----ESTLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~----~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~ 208 (413)
.++|+||||||+... . ...++.+..+++|+.++.++++++... ..++||++||...+...
T Consensus 102 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~~----- 176 (296)
T 3k31_A 102 LAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKVV----- 176 (296)
T ss_dssp HHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCC-----
T ss_pred HHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccCC-----
Confidence 589999999998643 1 223345568899999999999888764 24699999998766332
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.|.++..... .-............
T Consensus 177 ------~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~ 237 (296)
T 3k31_A 177 ------PHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGI-------------SDFHYILTWNKYNS 237 (296)
T ss_dssp ------TTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSC-------------HHHHHHHHHHHHHS
T ss_pred ------CCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcc-------------cchHHHHHHHHhcC
Confidence 23678999999999999999888 589999999999998753210 11112222222222
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCccc
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKGRS 340 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~~s 340 (413)
+ ...+...+|+|+++++++... ....++++++.+|..+.
T Consensus 238 p----------------~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~~~ 277 (296)
T 3k31_A 238 P----------------LRRNTTLDDVGGAALYLLSDLGRGTTGETVHVDCGYHVV 277 (296)
T ss_dssp T----------------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGC
T ss_pred C----------------CCCCCCHHHHHHHHHHHcCCccCCccCCEEEECCCcccc
Confidence 2 124678899999999999853 23356899998886553
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-26 Score=210.06 Aligned_cols=241 Identities=12% Similarity=0.005 Sum_probs=167.0
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+....+++.+.+.+..+ +.++.++.+|++|++++++++++
T Consensus 5 ~l~~-k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (265)
T 3lf2_A 5 DLSE-AVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFP-GARLFASVCDVLDALQVRAFAEACE 82 (265)
T ss_dssp CCTT-CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHST-TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcCC-CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-CceEEEEeCCCCCHHHHHHHHHHHH
Confidence 3556 9999999999999999999999999999998865444444444443222 23589999999999999888765
Q ss_pred ---CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+...... .++.+..+++|+.++.++++++ ++.+.++||++||...+...
T Consensus 83 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 153 (265)
T 3lf2_A 83 RTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPE--------- 153 (265)
T ss_dssp HHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCC---------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCC---------
Confidence 589999999998654332 2334557889999977666655 44557899999998766332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
.+..+|+.||++.+.+++.++.+ .|+++++|+||.|.++........... ...-............
T Consensus 154 --~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---- 222 (265)
T 3lf2_A 154 --PHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREE-----RELDWAQWTAQLARNK---- 222 (265)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC-----------CHHHHHHHHHHHT----
T ss_pred --CCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhh-----hccCHHHHHHHHhhcc----
Confidence 23678999999999999999988 589999999999987531000000000 0000011111111100
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKG 338 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~ 338 (413)
......+..++|+|+++++++... ....++++++.+|..
T Consensus 223 ----------~~p~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~~ 262 (265)
T 3lf2_A 223 ----------QIPLGRLGKPIEAARAILFLASPLSAYTTGSHIDVSGGLS 262 (265)
T ss_dssp ----------TCTTCSCBCHHHHHHHHHHHHSGGGTTCCSEEEEESSSCC
T ss_pred ----------CCCcCCCcCHHHHHHHHHHHhCchhcCcCCCEEEECCCCc
Confidence 011235788999999999998743 233568999987754
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-27 Score=214.44 Aligned_cols=226 Identities=13% Similarity=0.109 Sum_probs=160.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+.. ...+...++ +.++.++.+|++|+++++++++.
T Consensus 4 l~~-k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~---~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (253)
T 1hxh_A 4 LQG-KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA---AGQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQR 76 (253)
T ss_dssp TTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHHHc---CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 446 89999999999999999999999999999986532 233333333 35789999999999999888765
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..++.+..+++|+.+ ++.+++.|++.+ ++||++||...+...
T Consensus 77 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 145 (253)
T 1hxh_A 77 RLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPI---------- 145 (253)
T ss_dssp HHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSCC----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcCCC----------
Confidence 47999999999865432 223345578899887 455666776667 899999998876432
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---C--CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---S--DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~--gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
.+...|+.||++.+.+++.++.+ . |+++++|+||.|+++...... + + ..... ......
T Consensus 146 -~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~---~-~------~~~~~---~~~~~~--- 208 (253)
T 1hxh_A 146 -EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASL---P-K------GVSKE---MVLHDP--- 208 (253)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHS---C-T------TCCHH---HHBCBT---
T ss_pred -CCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhcc---c-h------hhhHH---HHhhhh---
Confidence 23678999999999999999877 3 899999999999986311000 0 0 00000 011100
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
.......+.+++|+|+++++++.... ...++++++.+|.
T Consensus 209 ----------~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 248 (253)
T 1hxh_A 209 ----------KLNRAGRAYMPERIAQLVLFLASDESSVMSGSELHADNSI 248 (253)
T ss_dssp ----------TTBTTCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSSC
T ss_pred ----------ccCccCCCCCHHHHHHHHHHHcCccccCCCCcEEEECCCc
Confidence 01112357899999999999987543 2345799997764
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=209.95 Aligned_cols=227 Identities=13% Similarity=0.076 Sum_probs=159.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-CC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-NA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~ 145 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+..+ ..+.. ++ .++.++.+|++|++++++++++ .+
T Consensus 4 l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~-~~----~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (246)
T 2ag5_A 4 LDG-KVIILTAAAQGIGQAAALAFAREGAKVIATDINESK---LQELE-KY----PGIQTRVLDVTKKKQIDQFANEVER 74 (246)
T ss_dssp TTT-CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HGGGG-GS----TTEEEEECCTTCHHHHHHHHHHCSC
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHH-hc----cCceEEEeeCCCHHHHHHHHHHhCC
Confidence 345 899999999999999999999999999999875322 22111 21 3688999999999999987765 57
Q ss_pred CcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||+...... .++.+..+++|+.++.+++++ |++.+.++||++||...+.... .+.
T Consensus 75 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------~~~ 144 (246)
T 2ag5_A 75 LDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGV----------VNR 144 (246)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCC----------TTB
T ss_pred CCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCCC----------CCC
Confidence 9999999998654322 233455788999996665555 4456778999999977653211 136
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
..|+.||++.+.+++.++.+ .|+++++|+||.+++|....... . ...............+
T Consensus 145 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--------~-~~~~~~~~~~~~~~~~-------- 207 (246)
T 2ag5_A 145 CVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQ--------A-RGNPEEARNDFLKRQK-------- 207 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHH--------H-SSSHHHHHHHHHHTCT--------
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhh--------c-ccCcHHHHHHHHhcCC--------
Confidence 78999999999999999887 58999999999999863100000 0 0000111111111111
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...+++++|+|+++++++.... ...++++++.+|.
T Consensus 208 --------~~~~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdgG~ 243 (246)
T 2ag5_A 208 --------TGRFATAEEIAMLCVYLASDESAYVTGNPVIIDGGW 243 (246)
T ss_dssp --------TSSCEEHHHHHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred --------CCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 1246899999999999987543 2345799997764
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=211.16 Aligned_cols=231 Identities=13% Similarity=0.090 Sum_probs=164.7
Q ss_pred CCCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 65 QHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 65 ~~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
.++++ |++|||||+++||+++|+.|+++|++|++++|+. +.+.+.++++ +.++..+++|++|++++++++++
T Consensus 25 ~rL~g-KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~---~~l~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~ 97 (273)
T 4fgs_A 25 QRLNA-KIAVITGATSGIGLAAAKRFVAEGARVFITGRRK---DVLDAAIAEI---GGGAVGIQADSANLAELDRLYEKV 97 (273)
T ss_dssp CTTTT-CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH---HHHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHH
T ss_pred chhCC-CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHHc---CCCeEEEEecCCCHHHHHHHHHHH
Confidence 35778 9999999999999999999999999999998753 3444444554 45788999999999999988766
Q ss_pred ----CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
+++|+||||||+....+. .++++..+++|+.++..+.+++... +.++||++||...+...+
T Consensus 98 ~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~~--------- 168 (273)
T 4fgs_A 98 KAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGTP--------- 168 (273)
T ss_dssp HHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCCT---------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCCC---------
Confidence 689999999998655443 2344557889999977766665432 246899999977653322
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
...+|+.||++...+++.++.| +||++++|.||.|-.|......+..+ .-...+.+......| +
T Consensus 169 --~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~--------~~~~~~~~~~~~~~P-l-- 235 (273)
T 4fgs_A 169 --AFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDP--------VQQQGLLNALAAQVP-M-- 235 (273)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CH--------HHHHHHHHHHHHHST-T--
T ss_pred --CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCc--------hhhHHHHHHHHhcCC-C--
Confidence 2678999999999999999988 68999999999998764221110000 011122233322222 1
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
..+...+|+|+++++++.... --.|+++.+.+|.
T Consensus 236 -------------gR~g~peeiA~~v~FLaSd~a~~iTG~~i~VDGG~ 270 (273)
T 4fgs_A 236 -------------GRVGRAEEVAAAALFLASDDSSFVTGAELFVDGGS 270 (273)
T ss_dssp -------------SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred -------------CCCcCHHHHHHHHHHHhCchhcCccCCeEeECcCh
Confidence 135678999999999887433 2356788887664
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=215.79 Aligned_cols=230 Identities=14% Similarity=0.090 Sum_probs=167.1
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC--CCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR--GNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|... ..+.+.+.+.+ .+.++.++.+|++|++++++++++
T Consensus 46 ~l~~-k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~ 121 (294)
T 3r3s_A 46 RLKD-RKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEE---CGRKAVLLPGDLSDESFARSLVHK 121 (294)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHH---TTCCEEECCCCTTSHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHH---cCCcEEEEEecCCCHHHHHHHHHH
Confidence 4566 99999999999999999999999999999876422 11122222222 246789999999999999888765
Q ss_pred -----CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHHHHHHHHcC--CCEEEEeccceecCCCCCCCCCCC
Q 015080 144 -----NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVVLESMARHG--VDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+... .. ..++.+..+++|+.++.++++++...- .++||++||...+....
T Consensus 122 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~------- 194 (294)
T 3r3s_A 122 AREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPSP------- 194 (294)
T ss_dssp HHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCCT-------
T ss_pred HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCCC-------
Confidence 589999999997542 21 233456688999999999999987652 35999999988775332
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
+...|+.||++.+.+++.++.+ .|+++++|+||.|.++..... ...... +
T Consensus 195 ----~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~-------------~~~~~~----------~ 247 (294)
T 3r3s_A 195 ----HLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISG-------------GQTQDK----------I 247 (294)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTT-------------TSCGGG----------S
T ss_pred ----CchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCcccccccc-------------CCCHHH----------H
Confidence 3678999999999999999888 489999999999998631000 000000 0
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
.... .......+..++|+|+++++++.... ...++++++.+|..+
T Consensus 248 ~~~~------~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~l 293 (294)
T 3r3s_A 248 PQFG------QQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGEHL 293 (294)
T ss_dssp TTTT------TTSTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTCCC
T ss_pred HHHH------hcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCCccC
Confidence 0000 12223457889999999999887543 234689999888654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-27 Score=216.90 Aligned_cols=235 Identities=21% Similarity=0.176 Sum_probs=164.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+....++..+.+.+.. .+.++.++.+|++|+++++++++.
T Consensus 5 ~~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (267)
T 2gdz_A 5 VNG-KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF-EPQKTLFIQCDVADQQQLRDTFRKVVD 82 (267)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS-CGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCC-CEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhc-CCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 445 899999999999999999999999999999875433222222222211 124688999999999999988765
Q ss_pred --CCCcEEEEcCcccCccCCcCChHHHHHHHHHH----HHHHHHHHHHcC---CCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGESTLDPLKYYHNITSN----TLVVLESMARHG---VDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~----~~~ll~~~~~~~---~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||+.. .++.+..+++|+.+ ++.+++.+++.+ .++||++||...+...
T Consensus 83 ~~g~id~lv~~Ag~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 147 (267)
T 2gdz_A 83 HFGRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV----------- 147 (267)
T ss_dssp HHSCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC-----------
T ss_pred HcCCCCEEEECCCCCC----hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCC-----------
Confidence 57999999999753 35678889999886 566777776653 5799999998876432
Q ss_pred CCCChhHHHHHHHHHHHHHHH--hh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchH-HHHHHHHhccccce
Q 015080 215 APINPYGKAKKMAEDIILDFS--KN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRIS-GACFDAARGIIAGL 288 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~--~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i 288 (413)
.+...|+.||++.+.+++.++ .+ .|+++++|+||.+.++... .+. .............+
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~~~~ 212 (267)
T 2gdz_A 148 AQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILE---------------SIEKEENMGQYIEYKDHI 212 (267)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHH---------------GGGCHHHHGGGGGGHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhh---------------ccccccccchhhhHHHHH
Confidence 235689999999999998752 33 7999999999999875310 000 00000000000000
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHH
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKE 343 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e 343 (413)
. .......+++++|+|++++.++.... ..+++|++.+++..++.|
T Consensus 213 ~---------~~~~~~~~~~~~dvA~~v~~l~s~~~-~~G~~~~v~gg~~~~~~~ 257 (267)
T 2gdz_A 213 K---------DMIKYYGILDPPLIANGLITLIEDDA-LNGAIMKITTSKGIHFQD 257 (267)
T ss_dssp H---------HHHHHHCCBCHHHHHHHHHHHHHCTT-CSSCEEEEETTTEEEECC
T ss_pred H---------HHhccccCCCHHHHHHHHHHHhcCcC-CCCcEEEecCCCcccccC
Confidence 0 00011347899999999999998643 355899999888776644
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=216.54 Aligned_cols=217 Identities=16% Similarity=0.141 Sum_probs=155.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+|+||++++++|+++|++|++++|+....+++.+.+.. .+.++.++.+|++|.+++++++++
T Consensus 29 l~g-k~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (301)
T 3tjr_A 29 FDG-RAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRG---QGFDAHGVVCDVRHLDEMVRLADEAFR 104 (301)
T ss_dssp STT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 456 8999999999999999999999999999998765444444444433 246799999999999999988865
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHH----HHHcC-CCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLES----MARHG-VDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.++.+++++ +++.+ .++||++||...+..
T Consensus 105 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 174 (301)
T 3tjr_A 105 LLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVP---------- 174 (301)
T ss_dssp HHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSC----------
T ss_pred hCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCC----------
Confidence 48999999999865433 2234456788999997766655 45555 679999999877642
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHH-----Hhcc
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDA-----ARGI 284 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 284 (413)
..+...|+.||++.+.+++.++.+ .|+++++|+||.|.++. ....... ....
T Consensus 175 -~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~-------------------~~~~~~~~~~~~~~~~ 234 (301)
T 3tjr_A 175 -NAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKL-------------------VSNSERIRGADYGMSA 234 (301)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSH-------------------HHHHHHHC--------
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCcccccc-------------------ccccccccchhhcccc
Confidence 233678999999999999999887 58999999999998752 1111100 0000
Q ss_pred ccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC
Q 015080 285 IAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ 324 (413)
Q Consensus 285 ~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 324 (413)
.+ ....+ .......+++++|+|++++.+++.+.
T Consensus 235 ~~-~~~~~------~~~~~~~~~~pedvA~~i~~~l~~~~ 267 (301)
T 3tjr_A 235 TP-EGAFG------PLPTQDESVSADDVARLTADAILANR 267 (301)
T ss_dssp ---------------------CCCHHHHHHHHHHHHHHTC
T ss_pred Ch-hhhcc------ccccccCCCCHHHHHHHHHHHHhcCC
Confidence 01 11111 22234568999999999999999754
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=212.40 Aligned_cols=225 Identities=16% Similarity=0.113 Sum_probs=161.1
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |+||||||+||||++++++|+++|++|++++|...... ....+.+|++|.+++.++++.
T Consensus 25 ~l~g-k~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~--------------~~~~~~~Dv~~~~~~~~~~~~~~ 89 (266)
T 3uxy_A 25 GFEG-KVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA--------------ADLHLPGDLREAAYADGLPGAVA 89 (266)
T ss_dssp -CTT-CEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC--------------CSEECCCCTTSHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--------------hhhccCcCCCCHHHHHHHHHHHH
Confidence 3556 99999999999999999999999999999987544322 223457999999998877754
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++ ++.+.++||++||...+..
T Consensus 90 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~---------- 159 (266)
T 3uxy_A 90 AGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRP---------- 159 (266)
T ss_dssp HHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBC----------
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCC----------
Confidence 58999999999875433 22334557889999976666555 6677889999999876632
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
..+..+|+.||++.+.+++.++.+ .|+++++|+||.|.++...... ................
T Consensus 160 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~--------~~~~~~~~~~~~~~~~------ 224 (266)
T 3uxy_A 160 -GPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGF--------AKRGFDPDRAVAELGR------ 224 (266)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHH--------HHTTCCHHHHHHHHHT------
T ss_pred -CCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhh--------hcccccchHHHHHHHh------
Confidence 233678999999999999999888 4899999999999886310000 0000000111111111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCccc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRS 340 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s 340 (413)
......+.+++|+|+++++++.... ...++++++.+|..++
T Consensus 225 ----------~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~s 266 (266)
T 3uxy_A 225 ----------TVPLGRIAEPEDIADVVLFLASDAARYLCGSLVEVNGGKAVA 266 (266)
T ss_dssp ----------TSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTCCCC
T ss_pred ----------cCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECcCEeCC
Confidence 1223467899999999999987543 2346899998886553
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-26 Score=209.80 Aligned_cols=225 Identities=15% Similarity=0.124 Sum_probs=164.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |+||||||+||||++++++|+++|++|+++++ ++.+...+.++++...+.++.++.+|++|++++++++++
T Consensus 23 ~l~~-k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~--r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 99 (267)
T 4iiu_A 23 NAMS-RSVLVTGASKGIGRAIARQLAADGFNIGVHYH--RDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEI 99 (267)
T ss_dssp --CC-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEES--SCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCC-CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC--CchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 4556 89999999999999999999999999977653 223333333333333356899999999999999988865
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHH-----HcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMA-----RHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~-----~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++. +.+.++||++||...+...
T Consensus 100 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 171 (267)
T 4iiu_A 100 AQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGN-------- 171 (267)
T ss_dssp HHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHCC--------
T ss_pred HHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccCC--------
Confidence 48999999999865433 233455678999999888777653 4567899999997765322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
.+...|+.||++.+.+++.++.+ .|+++++++||.|.++... .. +..........+
T Consensus 172 ---~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~-~~~~~~~~~~~p-- 230 (267)
T 4iiu_A 172 ---RGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIE---------------ME-ESALKEAMSMIP-- 230 (267)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCC---------------CC-HHHHHHHHHTCT--
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccc---------------cc-HHHHHHHHhcCC--
Confidence 23678999999999999999887 4899999999999987532 11 222222222222
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCC
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTG 336 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~ 336 (413)
...+.+++|+|+++++++... ....++++++.+|
T Consensus 231 --------------~~~~~~~edva~~~~~L~s~~~~~itG~~i~vdGG 265 (267)
T 4iiu_A 231 --------------MKRMGQAEEVAGLASYLMSDIAGYVTRQVISINGG 265 (267)
T ss_dssp --------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --------------CCCCcCHHHHHHHHHHHhCCcccCccCCEEEeCCC
Confidence 124678999999999988753 2335689999766
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-26 Score=209.58 Aligned_cols=221 Identities=12% Similarity=0.042 Sum_probs=158.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+||||++++++|+++|++|++++|+... +.++.++.+|++|++++++++++
T Consensus 6 l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--------------~~~~~~~~~Dl~~~~~v~~~~~~~~~ 70 (264)
T 2dtx_A 6 LRD-KVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG--------------EAKYDHIECDVTNPDQVKASIDHIFK 70 (264)
T ss_dssp GTT-CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC--------------SCSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc--------------CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 445 899999999999999999999999999999886543 24688999999999999988864
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++ ++.+.++||++||...+...
T Consensus 71 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 140 (264)
T 2dtx_A 71 EYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIIT---------- 140 (264)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCC----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCC----------
Confidence 47999999999865432 22345567889999966655554 44567899999998776432
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhCC--CcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhc-cc----c
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKNSD--MAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARG-II----A 286 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~~g--i~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~ 286 (413)
.+...|+.||++.+.+++.++.+.+ +++++|+||.+.++. ...+...... .. .
T Consensus 141 -~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~-------------------~~~~~~~~~~~~~~~~~~ 200 (264)
T 2dtx_A 141 -KNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPL-------------------VRKAAELEVGSDPMRIEK 200 (264)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHH-------------------HHHHHHHHHCSCHHHHHH
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcc-------------------hhhhhhcccccCchhhHH
Confidence 2367899999999999999988743 999999999998742 1111000000 00 0
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...... .......+++++|+|+++++++.... ...++++++.+|..
T Consensus 201 ~~~~~~------~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 247 (264)
T 2dtx_A 201 KISEWG------HEHPMQRIGKPQEVASAVAFLASREASFITGTCLYVDGGLS 247 (264)
T ss_dssp HHHHHH------HHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHH------hcCCCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCCcc
Confidence 000000 00112357899999999999987542 23457999987753
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-26 Score=209.97 Aligned_cols=229 Identities=14% Similarity=0.099 Sum_probs=167.0
Q ss_pred CCCceEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGas--G~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+ |+||||||+ ||||++++++|+++|++|++++|+. ..++..+.+.+.. ....++.+|++|++++++++++
T Consensus 7 l~~-k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~ 81 (265)
T 1qsg_A 7 LSG-KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQL---GSDIVLQCDVAEDASIDTMFAEL 81 (265)
T ss_dssp TTT-CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHH
T ss_pred cCC-CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhc---CCcEEEEccCCCHHHHHHHHHHH
Confidence 345 899999999 9999999999999999999999865 3333333333321 2347899999999999988865
Q ss_pred ----CCCcEEEEcCcccCc----c-----CCcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYV----G-----ESTLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~----~-----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~ 208 (413)
.++|+||||||+... . ...++.+..+++|+.++.++++++... +.++||++||...+..
T Consensus 82 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------ 155 (265)
T 1qsg_A 82 GKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERA------ 155 (265)
T ss_dssp HTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSB------
T ss_pred HHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccC------
Confidence 379999999997642 1 223345568999999999999998765 2369999999776532
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
..+..+|+.||++.+.+++.++.+ .|+++++|+||.|+++..... ...+..........
T Consensus 156 -----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-------------~~~~~~~~~~~~~~ 217 (265)
T 1qsg_A 156 -----IPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI-------------KDFRKMLAHCEAVT 217 (265)
T ss_dssp -----CTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS-------------TTHHHHHHHHHHHS
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcc-------------cccHHHHHHHHhcC
Confidence 223678999999999999999887 489999999999998752110 01122222222211
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCccc
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRS 340 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s 340 (413)
+ ...+.+++|+|+++++++.... ...+++|++.+|...+
T Consensus 218 p----------------~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~~ 257 (265)
T 1qsg_A 218 P----------------IRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIA 257 (265)
T ss_dssp T----------------TSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGGGB
T ss_pred C----------------CCCCCCHHHHHHHHHHHhCchhcCccCCEEEECCCcCCC
Confidence 1 1246799999999999987533 2245799998886544
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.5e-26 Score=208.00 Aligned_cols=232 Identities=14% Similarity=0.063 Sum_probs=162.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|+++++. ..+...+...++...+.++.++.+|++|++++++++++
T Consensus 5 ~l~~-k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (259)
T 3edm_A 5 RFTN-RTIVVAGAGRDIGRACAIRFAQEGANVVLTYNG--AAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAA 81 (259)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECS--SCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC--CHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 3456 999999999999999999999999999998542 22233333333333356789999999999999988865
Q ss_pred ---CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHHHHHHHHcC--CCEEEEeccceec-CCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVVLESMARHG--VDTLIYSSTCATY-GEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~iV~~SS~~~~-~~~~~~~~~e~~ 212 (413)
.++|+||||||.... .. ..++.+..+++|+.++.++++++...- .++||++||...+ ..
T Consensus 82 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 151 (259)
T 3edm_A 82 DKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGG---------- 151 (259)
T ss_dssp HHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCC----------
T ss_pred HHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCC----------
Confidence 489999999997622 22 222345678999999999999887652 3599999998776 32
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKNS--DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
..+..+|+.||++.+.+++.++.+. ++++++++||.|.++..... ..+.......
T Consensus 152 -~~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~--------------~~~~~~~~~~-------- 208 (259)
T 3edm_A 152 -GPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTF--------------TKPEVRERVA-------- 208 (259)
T ss_dssp -STTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC--------------------------------------
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccccc--------------cChHHHHHHH--------
Confidence 2236789999999999999999883 39999999999987642110 0011111111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcccH
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSV 341 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~ 341 (413)
.......+.+++|+|+++++++.... ...|++|++.+|...+.
T Consensus 209 --------~~~p~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGg~~~~~ 252 (259)
T 3edm_A 209 --------GATSLKREGSSEDVAGLVAFLASDDAAYVTGACYDINGGVLFSE 252 (259)
T ss_dssp --------------CCBCHHHHHHHHHHHHSGGGTTCCSCEEEESBCSSBC-
T ss_pred --------hcCCCCCCcCHHHHHHHHHHHcCccccCccCCEEEECCCcCCCC
Confidence 12233467899999999999887543 23468999987765543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=211.42 Aligned_cols=172 Identities=16% Similarity=0.109 Sum_probs=134.3
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
++ |++|||||+|+||++++++|+++|++|++++|+....+++.+.+.+ .+..+.++.+|++|++++++++++
T Consensus 3 ~~-k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 78 (264)
T 3tfo_A 3 MD-KVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRD---AGGTALAQVLDVTDRHSVAAFAQAAVDT 78 (264)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CC-CEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45 8999999999999999999999999999998765444444444433 246789999999999999888765
Q ss_pred -CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHH----HHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTL----VVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~----~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||+..... ..++.+..+++|+.++. .+++.|++.+.++||++||...+...
T Consensus 79 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~----------- 147 (264)
T 3tfo_A 79 WGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVV----------- 147 (264)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC-----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccC-----------
Confidence 58999999999865433 22334557889999965 45556666777899999998776432
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhC-CCcEEEEeecceecCC
Q 015080 215 APINPYGKAKKMAEDIILDFSKNS-DMAVMILRYFNVIGSD 254 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~~-gi~~~~lrp~~v~G~~ 254 (413)
.+...|+.||++.+.+++.++.+. |+++++|+||.|.++.
T Consensus 148 ~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~ 188 (264)
T 3tfo_A 148 PTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESEL 188 (264)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC----
T ss_pred CCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcc
Confidence 236789999999999999999884 8999999999998764
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=212.56 Aligned_cols=174 Identities=18% Similarity=0.173 Sum_probs=132.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC-CCchhhhhhh-hhcCCCCceEEEEccCCCHHHHHHHhhc-----
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR-GNIGAVKVLQ-ELFPEPGRLQFIYADLGDAKAVNKFFSE----- 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 143 (413)
|++|||||+||||++++++|+++|++|++.+|+.. ......+.+. .....+.++.++.+|++|++++++++++
T Consensus 6 k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~ 85 (324)
T 3u9l_A 6 KIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIGED 85 (324)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999999988532 2222222222 2112245799999999999999988865
Q ss_pred CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 144 NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
+++|+||||||+...... .++.+..+++|+.|+.++++++ ++.+.++||++||.+.+... ..
T Consensus 86 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~----------~~ 155 (324)
T 3u9l_A 86 GRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGT----------PP 155 (324)
T ss_dssp SCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------CS
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCC----------CC
Confidence 489999999998654332 2334557899999977765555 77778899999998776321 12
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
....|+.||++.+.+++.++.+ .|+++++|+||.|.++.
T Consensus 156 ~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~ 197 (324)
T 3u9l_A 156 YLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGT 197 (324)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC----
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCc
Confidence 2568999999999999999988 69999999999998764
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=214.91 Aligned_cols=232 Identities=12% Similarity=0.041 Sum_probs=167.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcC-
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSEN- 144 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 144 (413)
++.+ |+||||||+||||++++++|+++|++|++++|+..+. .+...++ +.++.++.+|++|.+++++++++.
T Consensus 13 ~l~g-k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~---~~~~~~~---~~~~~~~~~Dl~d~~~v~~~~~~~~ 85 (291)
T 3rd5_A 13 SFAQ-RTVVITGANSGLGAVTARELARRGATVIMAVRDTRKG---EAAARTM---AGQVEVRELDLQDLSSVRRFADGVS 85 (291)
T ss_dssp CCTT-CEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHTTS---SSEEEEEECCTTCHHHHHHHHHTCC
T ss_pred CCCC-CEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHH---HHHHHHh---cCCeeEEEcCCCCHHHHHHHHHhcC
Confidence 3557 9999999999999999999999999999998754332 2222222 357999999999999999999763
Q ss_pred CCcEEEEcCcccCcc--CCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCC-CCCCC-CCCCCCCCCChh
Q 015080 145 AFDAVMHFAAVAYVG--ESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEP-EKMPI-TEETPQAPINPY 220 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~-~~~~~-~e~~~~~~~~~Y 220 (413)
++|+||||||+..+. ...++.+..+++|+.++.++++++.....++||++||...+... ..... .+..+..+...|
T Consensus 86 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~~~~~~~~~~Y 165 (291)
T 3rd5_A 86 GADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWRSRRYSPWLAY 165 (291)
T ss_dssp CEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCSSSCCCHHHHH
T ss_pred CCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCcccccccccCCCCcchH
Confidence 799999999986543 24456778999999999999999988866799999998877432 22122 222345567789
Q ss_pred HHHHHHHHHHHHHHHhh---CC--CcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccc
Q 015080 221 GKAKKMAEDIILDFSKN---SD--MAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDY 295 (413)
Q Consensus 221 ~~sK~~~e~~~~~~~~~---~g--i~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 295 (413)
+.||++.+.+++.++.+ .| +++++++||.|..+.... ........... .+
T Consensus 166 ~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~---------------~~~~~~~~~~~----~~------ 220 (291)
T 3rd5_A 166 SQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGA---------------SGRKLGDALMS----AA------ 220 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccc---------------cchHHHHHHHH----HH------
Confidence 99999999999999887 35 999999999998764221 00111111110 00
Q ss_pred cCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCC
Q 015080 296 STADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTG 336 (413)
Q Consensus 296 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~ 336 (413)
..+-..+++|+|+++++++..+ ...++.|++.+|
T Consensus 221 ------~~~~~~~~~~~A~~~~~l~~~~-~~~G~~~~vdgG 254 (291)
T 3rd5_A 221 ------TRVVATDADFGARQTLYAASQD-LPGDSFVGPRFG 254 (291)
T ss_dssp ----------CHHHHHHHHHHHHHHHSC-CCTTCEEEETTS
T ss_pred ------HHHHhCCHHHHHHHHHHHHcCC-CCCCceeCCccc
Confidence 0112346899999999999874 345578888654
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=212.05 Aligned_cols=210 Identities=17% Similarity=0.132 Sum_probs=154.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |++|||||+||||++++++|+++|++|++++|+... +++.. ...+.++.+|++|.+++++++++
T Consensus 14 ~~~-k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~-------~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (266)
T 3p19_A 14 SMK-KLVVITGASSGIGEAIARRFSEEGHPLLLLARRVER-------LKALN--LPNTLCAQVDVTDKYTFDTAITRAEK 83 (266)
T ss_dssp -CC-CEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHH-------HHTTC--CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHH-------HHHhh--cCCceEEEecCCCHHHHHHHHHHHHH
Confidence 456 899999999999999999999999999999874321 11111 24788999999999999988865
Q ss_pred --CCCcEEEEcCcccCccCCc----CChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+....... ++.+..+++|+.++.+ +++.+++.+.++||++||...+...
T Consensus 84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~---------- 153 (266)
T 3p19_A 84 IYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTF---------- 153 (266)
T ss_dssp HHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC----------
T ss_pred HCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCC----------
Confidence 4899999999986543322 2344568899999766 6666667778899999998876432
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.|.++..... ............. .
T Consensus 154 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~--------------~~~~~~~~~~~~~--~-- 214 (266)
T 3p19_A 154 -PDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHT--------------TSQQIKDGYDAWR--V-- 214 (266)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGC--------------SCHHHHHHHHHHH--H--
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcc--------------cchhhhHHHHhhc--c--
Confidence 23678999999999999999888 689999999999998742110 0011111111100 0
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK 326 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~ 326 (413)
....+++++|+|+++++++..+...
T Consensus 215 -----------~~~r~~~pedvA~av~~l~~~~~~~ 239 (266)
T 3p19_A 215 -----------DMGGVLAADDVARAVLFAYQQPQNV 239 (266)
T ss_dssp -----------HTTCCBCHHHHHHHHHHHHHSCTTE
T ss_pred -----------cccCCCCHHHHHHHHHHHHcCCCCc
Confidence 1124789999999999999976553
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=204.44 Aligned_cols=220 Identities=14% Similarity=0.090 Sum_probs=158.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+.. ...+...++ ++.++.+|++|++++++++++
T Consensus 3 l~~-k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~---~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~ 73 (245)
T 1uls_A 3 LKD-KAVLITGAAHGIGRATLELFAKEGARLVACDIEEG---PLREAAEAV-----GAHPVVMDVADPASVERGFAEALA 73 (245)
T ss_dssp TTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHTT-----TCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHHHc-----CCEEEEecCCCHHHHHHHHHHHHH
Confidence 345 89999999999999999999999999999987532 222222222 378899999999999888765
Q ss_pred --CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+...... .++.+..+++|+.++.++++++ ++.+.++||++||...++.
T Consensus 74 ~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~----------- 142 (245)
T 1uls_A 74 HLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGN----------- 142 (245)
T ss_dssp HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCC-----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcCC-----------
Confidence 579999999997644322 2334557889999977765555 4456789999999874332
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.|.++... .+.+..........+
T Consensus 143 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~p---- 202 (245)
T 1uls_A 143 -LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTA---------------KVPEKVREKAIAATP---- 202 (245)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTS---------------SSCHHHHHHHHHTCT----
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchh---------------hcCHHHHHHHHhhCC----
Confidence 22578999999999999999877 5899999999999876421 111111122211111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
. ..+++.+|+|+++++++.... ...++++++.+|..
T Consensus 203 --------~----~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 239 (245)
T 1uls_A 203 --------L----GRAGKPLEVAYAALFLLSDESSFITGQVLFVDGGRT 239 (245)
T ss_dssp --------T----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred --------C----CCCcCHHHHHHHHHHHhCchhcCCcCCEEEECCCcc
Confidence 1 136899999999999987542 23457999977754
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-26 Score=202.73 Aligned_cols=202 Identities=14% Similarity=0.160 Sum_probs=147.9
Q ss_pred eEEEEEcCCChHHHHHHHHHH-HCCCEEEEEecCCC-CCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLL-KDSYRVTIVDNLSR-GNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~-~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+||||||+|+||++++++|+ +.|++|++++|+.. ..+++. . ...++.++.+|++|++++.+++ .++|+
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~---~~~~~~~~~~D~~d~~~~~~~~--~~~d~ 76 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----I---DHERVTVIEGSFQNPGXLEQAV--TNAEV 76 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----H---TSTTEEEEECCTTCHHHHHHHH--TTCSE
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----c---CCCceEEEECCCCCHHHHHHHH--cCCCE
Confidence 679999999999999999999 89999999987543 222111 0 1367999999999999999999 68999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCC-hhHHHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPIN-PYGKAKKMA 227 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~-~Y~~sK~~~ 227 (413)
||||||.. |+. +++++++|++.+.++||++||..+|+..+.. ..+.. ..... +|+.+|.++
T Consensus 77 vv~~ag~~---------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~-~~~~~-~~~~~~~y~~~K~~~ 138 (221)
T 3r6d_A 77 VFVGAMES---------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVA-LEKWT-FDNLPISYVQGERQA 138 (221)
T ss_dssp EEESCCCC---------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHH-HHHHH-HHTSCHHHHHHHHHH
T ss_pred EEEcCCCC---------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCcc-ccccc-ccccccHHHHHHHHH
Confidence 99999853 344 8999999999999999999999888643210 00000 01122 799999999
Q ss_pred HHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecc
Q 015080 228 EDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307 (413)
Q Consensus 228 e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i 307 (413)
|.+++. .|+++++||||.++++..... +..... .......++
T Consensus 139 e~~~~~----~~i~~~~vrpg~v~~~~~~~~-----------------------------~~~~~~-----~~~~~~~~~ 180 (221)
T 3r6d_A 139 RNVLRE----SNLNYTILRLTWLYNDPEXTD-----------------------------YELIPE-----GAQFNDAQV 180 (221)
T ss_dssp HHHHHH----SCSEEEEEEECEEECCTTCCC-----------------------------CEEECT-----TSCCCCCEE
T ss_pred HHHHHh----CCCCEEEEechhhcCCCCCcc-----------------------------eeeccC-----CccCCCcee
Confidence 998875 799999999999998732110 000000 001112479
Q ss_pred cHHHHHHHHHHHH--HhcCCCCccEEEecCCC
Q 015080 308 DVNDLVDAHVKAL--ERAQPKKVGIYNVGTGK 337 (413)
Q Consensus 308 ~v~Dva~a~~~~~--~~~~~~~~~~yni~~~~ 337 (413)
+.+|+|++++.++ ..+....++.+.++++.
T Consensus 181 ~~~dvA~~~~~l~~~~~~~~~~~~~~~i~~~~ 212 (221)
T 3r6d_A 181 SREAVVKAIFDILHAADETPFHRTSIGVGEPG 212 (221)
T ss_dssp EHHHHHHHHHHHHTCSCCGGGTTEEEEEECTT
T ss_pred eHHHHHHHHHHHHHhcChhhhhcceeeecCCC
Confidence 9999999999999 65543344688887554
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=207.03 Aligned_cols=239 Identities=16% Similarity=0.115 Sum_probs=166.5
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|+++++... +...+...++...+.++.++.+|++|++++++++++
T Consensus 15 ~l~~-k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 91 (270)
T 3is3_A 15 RLDG-KVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANST--KDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAV 91 (270)
T ss_dssp CCTT-CEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CcCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 4667 99999999999999999999999999999875322 222222222222346799999999999999988865
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++... ..++||++||.... ..+.
T Consensus 92 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~----------~~~~ 161 (270)
T 3is3_A 92 AHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSK----------DFSV 161 (270)
T ss_dssp HHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTT----------TCCC
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhc----------cCCC
Confidence 58999999999875433 23345567899999998888888765 24599999996521 1123
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCC-CCCCcccccccchHHHHHHHHhccccceeE
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLG-EAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.|.++....... ..+.. ................
T Consensus 162 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----- 232 (270)
T 3is3_A 162 PKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNG----TSYTAEQRQQMAAHAS----- 232 (270)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTG----GGSCHHHHHHHHHHHS-----
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccc----cccchHHHHHHHHhcC-----
Confidence 34678999999999999999988 68999999999999874210000 00000 0001111122221111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
....+.+++|+|+++++++.... ...++++++.+|.
T Consensus 233 -----------p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 269 (270)
T 3is3_A 233 -----------PLHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDGGA 269 (270)
T ss_dssp -----------TTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred -----------CCCCCCCHHHHHHHHHHHcCCccCCccCcEEEeCCCC
Confidence 12346789999999999987542 2345799997764
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-26 Score=209.68 Aligned_cols=227 Identities=19% Similarity=0.096 Sum_probs=159.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++.+ |++|||||+|+||++++++|+++|++|+++++.. .+...+...++...+.++.++.+|++|++++++++++
T Consensus 24 ~~~~-k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 100 (267)
T 3u5t_A 24 METN-KVAIVTGASRGIGAAIAARLASDGFTVVINYAGK--AAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAE 100 (267)
T ss_dssp ---C-CEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSC--SHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCC--HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 3456 8999999999999999999999999999875422 2222222222222246789999999999999988865
Q ss_pred ---CCCcEEEEcCcccCccCCcC----ChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGESTL----DPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~~~----~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||+.......+ +.+..+++|+.++.++++++... ..++||++||...+...
T Consensus 101 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 169 (267)
T 3u5t_A 101 EAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLH----------- 169 (267)
T ss_dssp HHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCC-----------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCC-----------
Confidence 58999999999865443222 24456779999999888887654 24699999997765432
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.|..+.... ..............
T Consensus 170 ~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--------------~~~~~~~~~~~~~~------ 229 (267)
T 3u5t_A 170 PSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLE--------------GKSDEVRDRFAKLA------ 229 (267)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-------------------------CHHHHHTSS------
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccc--------------cCCHHHHHHHHhcC------
Confidence 23678999999999999999988 58999999999998764210 00011111122211
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCC
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTG 336 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~ 336 (413)
....+..++|+|+++++++..... ..++++++.+|
T Consensus 230 ----------p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 265 (267)
T 3u5t_A 230 ----------PLERLGTPQDIAGAVAFLAGPDGAWVNGQVLRANGG 265 (267)
T ss_dssp ----------TTCSCBCHHHHHHHHHHHHSTTTTTCCSEEEEESSS
T ss_pred ----------CCCCCcCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 123578899999999999875432 35579998765
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=211.71 Aligned_cols=224 Identities=17% Similarity=0.149 Sum_probs=163.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+. +...+...++ +.++.++.+|++|++++++++++
T Consensus 3 ~l~g-k~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~---~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~ 75 (247)
T 3rwb_A 3 RLAG-KTALVTGAAQGIGKAIAARLAADGATVIVSDINA---EGAKAAAASI---GKKARAIAADISDPGSVKALFAEIQ 75 (247)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCH---HHHHHHHHHH---CTTEEECCCCTTCHHHHHHHHHHHH
T ss_pred CcCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH---HHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 4556 9999999999999999999999999999987653 3333333333 35789999999999999988865
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHH----HHHcC-CCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLES----MARHG-VDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+..... ..++.+..+++|+.++.+++++ |++.+ .++||++||...+....
T Consensus 76 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------- 148 (247)
T 3rwb_A 76 ALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTP------- 148 (247)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTCT-------
T ss_pred HHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCCC-------
Confidence 58999999999865433 2234456788999996665555 76665 68999999987664322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
+..+|+.||++.+.+++.++.+ +|+++++++||.|.++..... +. .....+.... .
T Consensus 149 ----~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~------~~-----~~~~~~~~~~---~--- 207 (247)
T 3rwb_A 149 ----NMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKAS------PH-----NEAFGFVEML---Q--- 207 (247)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS------GG-----GGGHHHHHHH---S---
T ss_pred ----CchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCcccccc------Ch-----hHHHHHHhcc---c---
Confidence 3678999999999999999988 689999999999987631100 00 0011111110 0
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
....+...+|+|+++++++.... ...++++++.+|.
T Consensus 208 -------------~~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~ 244 (247)
T 3rwb_A 208 -------------AMKGKGQPEHIADVVSFLASDDARWITGQTLNVDAGM 244 (247)
T ss_dssp -------------SSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred -------------ccCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 11245789999999999887543 2356899997764
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-26 Score=210.53 Aligned_cols=217 Identities=14% Similarity=0.127 Sum_probs=150.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+.. .+.+...++ +.++.++.+|++|++++++++++
T Consensus 26 ~~~-k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~---~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~ 98 (272)
T 4dyv_A 26 TGK-KIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLD---ALQETAAEI---GDDALCVPTDVTDPDSVRALFTATVE 98 (272)
T ss_dssp --C-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHHH---TSCCEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH---HHHHHHHHh---CCCeEEEEecCCCHHHHHHHHHHHHH
Confidence 345 89999999999999999999999999999987533 333333333 25789999999999999988865
Q ss_pred --CCCcEEEEcCcccCcc-C----CcCChHHHHHHHHHHHH----HHHHHHHHcC--CCEEEEeccceecCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVG-E----STLDPLKYYHNITSNTL----VVLESMARHG--VDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~-~----~~~~~~~~~~~n~~~~~----~ll~~~~~~~--~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
.++|+||||||+..+. . ..++.+..+++|+.++. .+++.+++.+ .++||++||...+..
T Consensus 99 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~-------- 170 (272)
T 4dyv_A 99 KFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSP-------- 170 (272)
T ss_dssp HHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSC--------
T ss_pred HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCC--------
Confidence 4899999999986431 1 23334567889999944 4555666554 579999999776532
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
..+...|+.||++.+.+++.++.+ .|+++++|+||.|..+... .+ ........
T Consensus 171 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~---------------~~----~~~~~~~~-- 226 (272)
T 4dyv_A 171 ---RPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQ---------------KM----KAGVPQAD-- 226 (272)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC------------------------------------
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhh---------------hh----cccchhhh--
Confidence 233678999999999999999887 6899999999999886421 00 00000000
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEe
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNV 333 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni 333 (413)
.......+++++|+|+++++++..+.......+.+
T Consensus 227 -----------~~~~~~~~~~pedvA~~v~fL~s~~~~~~~~~i~i 261 (272)
T 4dyv_A 227 -----------LSIKVEPVMDVAHVASAVVYMASLPLDANVQFMTI 261 (272)
T ss_dssp --------------------CHHHHHHHHHHHHHSCTTSCCCEEEE
T ss_pred -----------hcccccCCCCHHHHHHHHHHHhCCCCcCccceEEE
Confidence 01122347899999999999999765543333333
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=204.72 Aligned_cols=188 Identities=12% Similarity=0.036 Sum_probs=147.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-CCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-NAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~~dvv 149 (413)
|+||||||+||||++++++|+ +|++|++++|+.. ++.+|++|++++++++++ .++|+|
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~--------------------~~~~D~~~~~~~~~~~~~~~~~d~v 62 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG--------------------DVTVDITNIDSIKKMYEQVGKVDAI 62 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS--------------------SEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc--------------------ceeeecCCHHHHHHHHHHhCCCCEE
Confidence 589999999999999999999 9999999987432 467999999999998865 469999
Q ss_pred EEcCcccCccCCc----CChHHHHHHHHHHHHHHHHHHHHc---CCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHH
Q 015080 150 MHFAAVAYVGEST----LDPLKYYHNITSNTLVVLESMARH---GVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGK 222 (413)
Q Consensus 150 i~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~ll~~~~~~---~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~ 222 (413)
|||||........ ++....+++|+.++.++++++.+. + ++||++||...+.. ..+...|+.
T Consensus 63 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~-----------~~~~~~Y~~ 130 (202)
T 3d7l_A 63 VSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK-GSFTLTTGIMMEDP-----------IVQGASAAM 130 (202)
T ss_dssp EECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE-EEEEEECCGGGTSC-----------CTTCHHHHH
T ss_pred EECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC-CEEEEEcchhhcCC-----------CCccHHHHH
Confidence 9999976433322 223456789999999999998876 4 79999999776532 233678999
Q ss_pred HHHHHHHHHHHHHhh--CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCC
Q 015080 223 AKKMAEDIILDFSKN--SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADG 300 (413)
Q Consensus 223 sK~~~e~~~~~~~~~--~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 300 (413)
+|++.|.+++.++.+ .|++++++|||.++++.. . ... .
T Consensus 131 sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~-----------------------~-~~~----------------~ 170 (202)
T 3d7l_A 131 ANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWD-----------------------K-LEP----------------F 170 (202)
T ss_dssp HHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHH-----------------------H-HGG----------------G
T ss_pred HHHHHHHHHHHHHHHccCCeEEEEEecCccCCchh-----------------------h-hhh----------------h
Confidence 999999999999877 499999999999998630 0 001 1
Q ss_pred ceeeecccHHHHHHHHHHHHHhcCCCCccEEEe
Q 015080 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNV 333 (413)
Q Consensus 301 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni 333 (413)
...+++++++|+|++++.++..... +++||+
T Consensus 171 ~~~~~~~~~~dva~~~~~~~~~~~~--G~~~~v 201 (202)
T 3d7l_A 171 FEGFLPVPAAKVARAFEKSVFGAQT--GESYQV 201 (202)
T ss_dssp STTCCCBCHHHHHHHHHHHHHSCCC--SCEEEE
T ss_pred ccccCCCCHHHHHHHHHHhhhcccc--CceEec
Confidence 1234689999999999988854333 368887
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=210.37 Aligned_cols=228 Identities=13% Similarity=0.055 Sum_probs=164.7
Q ss_pred CCCceEEEEEcCCCh--HHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGAGY--IGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~--IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+ |++|||||+|+ ||++++++|+++|++|++++|+....+.+.+...+. ..+.++.+|++|.+++++++++
T Consensus 29 l~g-k~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~ 103 (293)
T 3grk_A 29 LQG-KRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL----GAFVAGHCDVADAASIDAVFETL 103 (293)
T ss_dssp TTT-CEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH----TCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCC-CEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc----CCceEEECCCCCHHHHHHHHHHH
Confidence 556 99999999977 999999999999999999987532222222222222 4688999999999999988865
Q ss_pred ----CCCcEEEEcCcccCc----c----CCcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYV----G----ESTLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~----~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|+||||||+... . ...++.+..+++|+.++.++++++... ..++||++||...+...
T Consensus 104 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~------ 177 (293)
T 3grk_A 104 EKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVM------ 177 (293)
T ss_dssp HHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBC------
T ss_pred HHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCC------
Confidence 589999999998642 1 123345567899999999888888764 35699999998776432
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
.....|+.||++.+.+++.++.+ .|+++++|+||.|.++..... ..............+
T Consensus 178 -----~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~p 239 (293)
T 3grk_A 178 -----PNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGI-------------GDFRYILKWNEYNAP 239 (293)
T ss_dssp -----TTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-------------------CCHHHHHHHHHHHST
T ss_pred -----CchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcc-------------cchHHHHHHHHhcCC
Confidence 23678999999999999999887 589999999999998742210 011222222222222
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
...+..++|+|+++++++.... ...++++++.+|..+
T Consensus 240 ----------------~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 277 (293)
T 3grk_A 240 ----------------LRRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADSGYHV 277 (293)
T ss_dssp ----------------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred ----------------CCCCCCHHHHHHHHHHHcCccccCCcceEEEECCCccc
Confidence 1246789999999999887532 235689999888654
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=204.84 Aligned_cols=217 Identities=15% Similarity=0.107 Sum_probs=157.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+++ |+||||||+|+||++++++|+++|++|++++|+.... ..+.++.+|++|++++++++++
T Consensus 18 ~l~~-k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~--------------~~~~~~~~Dl~d~~~v~~~~~~~~ 82 (253)
T 2nm0_A 18 SHMS-RSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP--------------EGFLAVKCDITDTEQVEQAYKEIE 82 (253)
T ss_dssp --CC-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC--------------TTSEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh--------------ccceEEEecCCCHHHHHHHHHHHH
Confidence 3456 8999999999999999999999999999998854332 2378899999999999888765
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHH----HHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLE----SMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++ .+++.+.++||++||...+...
T Consensus 83 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~--------- 153 (253)
T 2nm0_A 83 ETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGS--------- 153 (253)
T ss_dssp HHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCCH---------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCC---------
Confidence 57999999999864322 345677899999999766555 4555677899999997665321
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
.+...|+.||++.+.+++.++.+ .|+++++++||.|.++... .+............+
T Consensus 154 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~---------------~~~~~~~~~~~~~~p--- 213 (253)
T 2nm0_A 154 --AGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTK---------------VLTDEQRANIVSQVP--- 213 (253)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC------------------------CHHHHHTTCT---
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchh---------------hcCHHHHHHHHhcCC---
Confidence 12568999999999999999887 6899999999998876421 000000111111111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
...+++.+|+|++++.++.... ...++++.+.+|...
T Consensus 214 -------------~~~~~~p~dvA~~i~~l~s~~~~~~tG~~i~vdGG~~~ 251 (253)
T 2nm0_A 214 -------------LGRYARPEEIAATVRFLASDDASYITGAVIPVDGGLGM 251 (253)
T ss_dssp -------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTC
T ss_pred -------------CCCCcCHHHHHHHHHHHhCccccCCcCcEEEECCcccc
Confidence 1247899999999999987543 234579999877543
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-26 Score=213.80 Aligned_cols=229 Identities=15% Similarity=0.145 Sum_probs=165.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC---EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY---RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
+.+ |++|||||+|+||++++++|+++|+ +|++++|+....+++.+.+....+ +.++.++.+|++|++++++++++
T Consensus 31 l~~-k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~ 108 (287)
T 3rku_A 31 LAK-KTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFP-NAKVHVAQLDITQAEKIKPFIEN 108 (287)
T ss_dssp HTT-CEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCT-TCEEEEEECCTTCGGGHHHHHHT
T ss_pred cCC-CEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCC-CCeEEEEECCCCCHHHHHHHHHH
Confidence 456 9999999999999999999999998 999998765544444444444322 35789999999999999998876
Q ss_pred -----CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCC
Q 015080 144 -----NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|+||||||+... .. ..++.+..+++|+.++.+++++ +++.+.++||++||...+..
T Consensus 109 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~------- 181 (287)
T 3rku_A 109 LPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDA------- 181 (287)
T ss_dssp SCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC-------
T ss_pred HHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCC-------
Confidence 479999999997642 21 2334556788999996665555 46677789999999876532
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
..+..+|+.||++.+.+++.++.+ .|+++++|+||.|.++...... .............
T Consensus 182 ----~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~-----------~~~~~~~~~~~~~--- 243 (287)
T 3rku_A 182 ----YPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRY-----------RGNEEQAKNVYKD--- 243 (287)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHT-----------TTCHHHHHHHHTT---
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccc-----------cCcHHHHHHhhcc---
Confidence 223678999999999999999988 6899999999999876310000 0000111111111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCcc
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGR 339 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~ 339 (413)
..++.++|+|+++++++..... ..++++.+.+++..
T Consensus 244 -----------------~~p~~pedvA~~v~~l~s~~~~~i~g~~i~v~~g~~~ 280 (287)
T 3rku_A 244 -----------------TTPLMADDVADLIVYATSRKQNTVIADTLIFPTNQAS 280 (287)
T ss_dssp -----------------SCCEEHHHHHHHHHHHHTSCTTEEEEEEEEEETTEEE
T ss_pred -----------------cCCCCHHHHHHHHHHHhCCCCCeEecceEEeeCCCCC
Confidence 1234889999999999986543 23468888776543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=206.88 Aligned_cols=231 Identities=13% Similarity=0.059 Sum_probs=168.3
Q ss_pred CCCCceEEEEEcCCCh--HHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 66 HEEGVTHVLVTGGAGY--IGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~--IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
.+.+ |++|||||+|+ ||++++++|+++|++|++++|+.+..+...+...+. . ..++.++.+|++|.+++++++++
T Consensus 4 ~l~~-k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~v~~~~~~ 80 (266)
T 3oig_A 4 SLEG-RNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTL-D-RNDSIILPCDVTNDAEIETCFAS 80 (266)
T ss_dssp CCTT-CEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTS-S-SCCCEEEECCCSSSHHHHHHHHH
T ss_pred ccCC-CEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhc-C-CCCceEEeCCCCCHHHHHHHHHH
Confidence 3556 99999999976 999999999999999999988643333333333222 2 13799999999999999988865
Q ss_pred -----CCCcEEEEcCcccCc----cC----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCC
Q 015080 144 -----NAFDAVMHFAAVAYV----GE----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~----~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~ 208 (413)
.++|+||||||+... .. ..+.....+++|+.++.++++++... +.++||++||...+..
T Consensus 81 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~------ 154 (266)
T 3oig_A 81 IKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELV------ 154 (266)
T ss_dssp HHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSC------
T ss_pred HHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccccccc------
Confidence 589999999998642 11 22334557889999999999888765 2469999999876643
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
..+...|+.||++.+.+++.++.+ .|+++++|+||.|.++..... .-............
T Consensus 155 -----~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~ 216 (266)
T 3oig_A 155 -----MPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGI-------------SDFNSILKDIEERA 216 (266)
T ss_dssp -----CTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTC-------------TTHHHHHHHHHHHS
T ss_pred -----CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccc-------------cchHHHHHHHHhcC
Confidence 223678999999999999999887 589999999999998643211 11122222222222
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
+ ...+.+++|+|+++++++.... ...++++++.+|...
T Consensus 217 ~----------------~~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdGG~~~ 255 (266)
T 3oig_A 217 P----------------LRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFHI 255 (266)
T ss_dssp T----------------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred C----------------CCCCCCHHHHHHHHHHHcCCchhcCcCCEEEECCCeEE
Confidence 1 1246789999999999998532 235689999887654
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-25 Score=204.25 Aligned_cols=226 Identities=19% Similarity=0.157 Sum_probs=165.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|+++++.. .+...+...++...+.++.++.+|++|++++++++++
T Consensus 29 l~g-k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (271)
T 3v2g_A 29 LAG-KTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNA--AERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVE 105 (271)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC--HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 456 9999999999999999999999999999987533 2222222223222346789999999999999988865
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++... +.++||++||...... +..
T Consensus 106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~----------~~~ 175 (271)
T 3v2g_A 106 ALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELV----------PWP 175 (271)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCC----------CST
T ss_pred HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccC----------CCC
Confidence 48999999999865433 23345567889999999988888765 4579999999654311 223
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
+...|+.||++.+.+++.++.+ .|+++++|+||.|.++..... + .... ......+
T Consensus 176 ~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~------~------~~~~----~~~~~~~------ 233 (271)
T 3v2g_A 176 GISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPAD------G------DHAE----AQRERIA------ 233 (271)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSS------C------SSHH----HHHHTCT------
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCccccc------c------hhHH----HHHhcCC------
Confidence 4678999999999999999888 589999999999998753211 0 1111 1111111
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCC
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGK 337 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~ 337 (413)
...+..++|+|+++++++... ....++++++.+|.
T Consensus 234 ----------~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 269 (271)
T 3v2g_A 234 ----------TGSYGEPQDIAGLVAWLAGPQGKFVTGASLTIDGGA 269 (271)
T ss_dssp ----------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred ----------CCCCCCHHHHHHHHHHHhCcccCCccCCEEEeCcCc
Confidence 124678999999999988643 23356899997764
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=206.10 Aligned_cols=224 Identities=13% Similarity=0.114 Sum_probs=161.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccC--CCHHHHHHHhhc
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL--GDAKAVNKFFSE 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~d~~~~~~~~~~ 143 (413)
.+++ |++|||||+|+||++++++|+++|++|++++|+....++..+.+.+.. +..+.++.+|+ +|.+++++++++
T Consensus 9 ~l~~-k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~ 85 (252)
T 3f1l_A 9 LLND-RIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET--GRQPQWFILDLLTCTSENCQQLAQR 85 (252)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--SCCCEEEECCTTTCCHHHHHHHHHH
T ss_pred ccCC-CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc--CCCceEEEEecccCCHHHHHHHHHH
Confidence 4567 999999999999999999999999999999986544444444444332 23688999999 999998888765
Q ss_pred -----CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCC
Q 015080 144 -----NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|+||||||+... .. ..++.+..+++|+.++.++++++ ++.+.++||++||...+...
T Consensus 86 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~------ 159 (252)
T 3f1l_A 86 IAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGR------ 159 (252)
T ss_dssp HHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCC------
T ss_pred HHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccCC------
Confidence 489999999998532 11 22233557889999966655554 66677899999998765322
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhCC--CcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKNSD--MAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g--i~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
.+..+|+.||++.+.+++.++.+.+ +++++|+||.|..+. . ......
T Consensus 160 -----~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~~-------------------~----~~~~~~--- 208 (252)
T 3f1l_A 160 -----ANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAM-------------------R----ASAFPT--- 208 (252)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSHH-------------------H----HHHCTT---
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCch-------------------h----hhhCCc---
Confidence 2367899999999999999998843 999999999987631 1 111111
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcccHH
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSVK 342 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~~ 342 (413)
.....+..++|+|+++++++.... ...++++++.+|...++.
T Consensus 209 -------------~~~~~~~~p~dva~~~~~L~s~~~~~itG~~i~vdgG~~~~~~ 251 (252)
T 3f1l_A 209 -------------EDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGIS 251 (252)
T ss_dssp -------------CCGGGSBCTGGGHHHHHHHHSGGGTTCCSCEEESSCC------
T ss_pred -------------cchhccCCHHHHHHHHHHHcCccccCCCCCEEEeCCCcCCCCC
Confidence 111246788999999999987543 235689999888766654
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-26 Score=206.91 Aligned_cols=209 Identities=16% Similarity=0.072 Sum_probs=153.7
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+++ |++|||||+|+||.+++++|+++|++|++++|+....+++.+.+.+......++.++.+|++|.+++++++++
T Consensus 4 ~~~~-k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (250)
T 3nyw_A 4 EKQK-GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH 82 (250)
T ss_dssp -CCC-CEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHH
Confidence 3456 8999999999999999999999999999999866555555555554433335789999999999999888865
Q ss_pred ---CCCcEEEEcCcccCccCC---cCChHHHHHHHHHHHHHHHH----HHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES---TLDPLKYYHNITSNTLVVLE----SMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~---~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+...... .++.+..+++|+.++..+++ .+++.+.++||++||...+..
T Consensus 83 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 151 (250)
T 3nyw_A 83 QKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYG----------- 151 (250)
T ss_dssp HHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC-----------------
T ss_pred HhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCC-----------
Confidence 589999999998654332 22334578899999655554 456667789999999775531
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
..+...|+.||++.+.+++.++.+ .|+++++++||.|..+. .......
T Consensus 152 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~-----------------------~~~~~~~------ 202 (250)
T 3nyw_A 152 FADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDM-----------------------AKKAGTP------ 202 (250)
T ss_dssp -CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHH-----------------------HHHTTCC------
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCch-----------------------hhhcCCC------
Confidence 223678999999999999999888 58999999999987641 1111111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP 325 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 325 (413)
.....+++.+|+|+++++++..+..
T Consensus 203 ----------~~~~~~~~p~dva~~v~~l~s~~~~ 227 (250)
T 3nyw_A 203 ----------FKDEEMIQPDDLLNTIRCLLNLSEN 227 (250)
T ss_dssp ----------SCGGGSBCHHHHHHHHHHHHTSCTT
T ss_pred ----------cccccCCCHHHHHHHHHHHHcCCCc
Confidence 1123578999999999999985543
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=204.83 Aligned_cols=217 Identities=15% Similarity=0.111 Sum_probs=155.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |+||||||+|+||++++++|+++|++|++++|+....+ .+..+.+|++|++++++++++
T Consensus 12 ~l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--------------~~~~~~~D~~~~~~~~~~~~~~~ 76 (247)
T 1uzm_A 12 PFVS-RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK--------------GLFGVEVDVTDSDAVDRAFTAVE 76 (247)
T ss_dssp CCCC-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT--------------TSEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH--------------HhcCeeccCCCHHHHHHHHHHHH
Confidence 3456 89999999999999999999999999999998654322 122388999999999888765
Q ss_pred ---CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++ ++.+.++||++||...+..
T Consensus 77 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 146 (247)
T 1uzm_A 77 EHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWG---------- 146 (247)
T ss_dssp HHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-------------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccC----------
Confidence 57999999999864322 22345567889999976665554 4566789999999765432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
..+...|+.||++.+.+++.++.+ .|+++++++||.+.++... .+............+
T Consensus 147 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~p--- 207 (247)
T 1uzm_A 147 -IGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTR---------------ALDERIQQGALQFIP--- 207 (247)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH---------------HSCHHHHHHHGGGCT---
T ss_pred -CCCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchh---------------hcCHHHHHHHHhcCC---
Confidence 123678999999999999999887 5899999999999865210 011111111111111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
...+++++|+|+++++++.... ...++++++.+|...
T Consensus 208 -------------~~~~~~~~dvA~~~~~l~s~~~~~~~G~~i~vdgG~~~ 245 (247)
T 1uzm_A 208 -------------AKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGGMGM 245 (247)
T ss_dssp -------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTC
T ss_pred -------------CCCCcCHHHHHHHHHHHcCccccCCcCCEEEECCCccc
Confidence 1247899999999999987532 234579999877543
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=204.88 Aligned_cols=214 Identities=14% Similarity=0.087 Sum_probs=157.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-------EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
|+||||||+|+||++++++|+++|+ +|++++|+....+ +...++...+.++.++.+|++|+++++++++.
T Consensus 3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 79 (244)
T 2bd0_A 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLE---KISLECRAEGALTDTITADISDMADVRRLTTH 79 (244)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHH---HHHHHHHTTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHH---HHHHHHHccCCeeeEEEecCCCHHHHHHHHHH
Confidence 8999999999999999999999999 9999987543222 22222222245789999999999999988864
Q ss_pred -----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCC
Q 015080 144 -----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++ ++.+.++||++||..++..
T Consensus 80 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~-------- 151 (244)
T 2bd0_A 80 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKA-------- 151 (244)
T ss_dssp HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC--------
T ss_pred HHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCC--------
Confidence 47999999999864432 22345567889999977766665 4556789999999887643
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
..+...|+.||++.+.+++.++.+ .|++++++|||.|+++..... . ..
T Consensus 152 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~------------------------~-~~- 202 (244)
T 2bd0_A 152 ---FRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV------------------------D-DE- 202 (244)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC------------------------C-ST-
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhc------------------------c-cc-
Confidence 233678999999999999888765 689999999999999752210 0 00
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCC-CccEEEecCCCc
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK-KVGIYNVGTGKG 338 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~-~~~~yni~~~~~ 338 (413)
. ...+++++|+|++++.++..+... .++++...+++.
T Consensus 203 -----------~---~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~~~~ 240 (244)
T 2bd0_A 203 -----------M---QALMMMPEDIAAPVVQAYLQPSRTVVEEIILRPTSGD 240 (244)
T ss_dssp -----------T---GGGSBCHHHHHHHHHHHHTSCTTEEEEEEEEEETTCC
T ss_pred -----------c---cccCCCHHHHHHHHHHHHhCCccccchheEEeccccc
Confidence 0 125789999999999999854332 234555544443
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=212.21 Aligned_cols=229 Identities=15% Similarity=0.098 Sum_probs=165.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+....+++.+.+.+. +.++.++.+|++|.++++++++.
T Consensus 30 ~l~g-k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~ 105 (275)
T 4imr_A 30 GLRG-RTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIAS---GGTAQELAGDLSEAGAGTDLIERAE 105 (275)
T ss_dssp CCTT-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHT---TCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc---CCeEEEEEecCCCHHHHHHHHHHHH
Confidence 3556 99999999999999999999999999999998776666665555443 46799999999999998887754
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..++.+..+++|+.++.+++++ +++.+.++||++||...+. +
T Consensus 106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~-----------~ 174 (275)
T 4imr_A 106 AIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLR-----------P 174 (275)
T ss_dssp HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------C
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC-----------C
Confidence 58999999999865433 2233455788999996665554 5666778999999987664 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
..+..+|+.||++.+.+++.++.+ .|+++++|+||.|.++..... ....+...........
T Consensus 175 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~------------~~~~~~~~~~~~~~~~---- 238 (275)
T 4imr_A 175 KSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADR------------RAQDPEGWDEYVRTLN---- 238 (275)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHH------------HHHCHHHHHHHHHHHS----
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccc------------cccChHHHHHHHhhcC----
Confidence 233567999999999999999888 489999999999987521000 0000111111111110
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
....+...+|+|+++++++.... -..|+++++.+|
T Consensus 239 -----------p~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG 274 (275)
T 4imr_A 239 -----------WMGRAGRPEEMVGAALFLASEACSFMTGETIFLTGG 274 (275)
T ss_dssp -----------TTCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESSC
T ss_pred -----------ccCCCcCHHHHHHHHHHHcCcccCCCCCCEEEeCCC
Confidence 01235678999999999887543 235579999765
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=211.03 Aligned_cols=235 Identities=14% Similarity=0.093 Sum_probs=166.2
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcC--CCCceEEEEccCCCHHHHHHHhhc
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFP--EPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
.+.+ |+||||||+||||++++++|+++|++|++++|+....+.+.+.+..... .+.++.++.+|++|+++++++++.
T Consensus 15 ~l~~-k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 93 (303)
T 1yxm_A 15 LLQG-QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 93 (303)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence 3556 8999999999999999999999999999998764433333333332111 235789999999999999988865
Q ss_pred -----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHH----cCCCEEEEeccceecCCCCCCCCCC
Q 015080 144 -----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMAR----HGVDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++.. .+.++||++||.. +..
T Consensus 94 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~~-------- 164 (303)
T 1yxm_A 94 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAG-------- 164 (303)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTC--------
T ss_pred HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-ccC--------
Confidence 47999999999754322 2233455789999999988888654 3457999999977 321
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
..+...|+.+|++.+.+++.++.+ .|+++++||||.|+|+....... ...+..........
T Consensus 165 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-----------~~~~~~~~~~~~~~-- 228 (303)
T 1yxm_A 165 ---FPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYG-----------SWGQSFFEGSFQKI-- 228 (303)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSG-----------GGGGGGGTTGGGGS--
T ss_pred ---CCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhcc-----------ccchHHHHHHHhcC--
Confidence 223568999999999999999888 48999999999999983110000 00000011111100
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCccc
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRS 340 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s 340 (413)
....+++++|+|++++.++.... ...+++|++.+|...+
T Consensus 229 --------------p~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~gG~~~~ 268 (303)
T 1yxm_A 229 --------------PAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRSLY 268 (303)
T ss_dssp --------------TTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGC
T ss_pred --------------cccCCCCHHHHHHHHHHHhCcccccCCCcEEEECCCeecc
Confidence 11247899999999999987532 2345799998886543
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=207.09 Aligned_cols=205 Identities=16% Similarity=0.113 Sum_probs=150.5
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+|+||++++++|+++|++|++++|+....+++.+.+.+ .+..+.++.+|++|.+++.++++.
T Consensus 27 l~~-k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~ 102 (262)
T 3rkr_A 27 LSG-QVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVA---AGGEAESHACDLSHSDAIAAFATGVLA 102 (262)
T ss_dssp TTT-CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCC-CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH---hCCceeEEEecCCCHHHHHHHHHHHHH
Confidence 456 8999999999999999999999999999998765444434344333 246799999999999999988765
Q ss_pred --CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+... .. ..++.+..+++|+.++.+++++ +++.+.++||++||...+..
T Consensus 103 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 172 (262)
T 3rkr_A 103 AHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNP---------- 172 (262)
T ss_dssp HHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCC----------
T ss_pred hcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCC----------
Confidence 579999999998322 11 2234456788999996665555 55567789999999876632
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
..+...|+.||++.+.+++.++.+ .|+++++++||.|..+... . ...
T Consensus 173 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~--------~~~------ 222 (262)
T 3rkr_A 173 -VADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGV---------------G--------LSA------ 222 (262)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------------------
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCccc---------------c--------ccc------
Confidence 233678999999999999999877 6899999999998875311 0 000
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP 325 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 325 (413)
......++..+|+|+++++++.....
T Consensus 223 ----------~~~~~~~~~p~dvA~~v~~l~s~~~~ 248 (262)
T 3rkr_A 223 ----------KKSALGAIEPDDIADVVALLATQADQ 248 (262)
T ss_dssp ----------------CCCHHHHHHHHHHHHTCCTT
T ss_pred ----------ccccccCCCHHHHHHHHHHHhcCccc
Confidence 01123467999999999999986443
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-27 Score=209.04 Aligned_cols=194 Identities=16% Similarity=0.151 Sum_probs=151.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-CCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-NAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~~dvv 149 (413)
|+||||||+|+||++++++|+++ +|++++|+.. ...+...++ .. .++.+|++|++++++++++ .++|+|
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~---~~~~~~~~~----~~-~~~~~D~~~~~~~~~~~~~~~~id~v 70 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAG---ALAELAREV----GA-RALPADLADELEAKALLEEAGPLDLL 70 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHH---HHHHHHHHH----TC-EECCCCTTSHHHHHHHHHHHCSEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHH---HHHHHHHhc----cC-cEEEeeCCCHHHHHHHHHhcCCCCEE
Confidence 57999999999999999999999 9999887432 222222222 12 7889999999999999853 479999
Q ss_pred EEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHH
Q 015080 150 MHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKK 225 (413)
Q Consensus 150 i~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~ 225 (413)
|||||...... ..++.+..+++|+.++.++++++++.+.++||++||..+|.. ..+...|+.||+
T Consensus 71 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~~-----------~~~~~~Y~~sK~ 139 (207)
T 2yut_A 71 VHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYVQ-----------VPGFAAYAAAKG 139 (207)
T ss_dssp EECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHS-----------STTBHHHHHHHH
T ss_pred EECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhccC-----------CCCcchHHHHHH
Confidence 99999764432 334566789999999999999997667789999999888743 234678999999
Q ss_pred HHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCce
Q 015080 226 MAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTC 302 (413)
Q Consensus 226 ~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 302 (413)
+.|.+++.++.+ .|++++++|||.++++... . .+..
T Consensus 140 a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~--------------------------~---------------~~~~ 178 (207)
T 2yut_A 140 ALEAYLEAARKELLREGVHLVLVRLPAVATGLWA--------------------------P---------------LGGP 178 (207)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGG--------------------------G---------------GTSC
T ss_pred HHHHHHHHHHHHHhhhCCEEEEEecCcccCCCcc--------------------------c---------------cCCC
Confidence 999999999887 6999999999999986300 0 1122
Q ss_pred eeecccHHHHHHHHHHHHHhcCCC
Q 015080 303 VRDYIDVNDLVDAHVKALERAQPK 326 (413)
Q Consensus 303 ~~~~i~v~Dva~a~~~~~~~~~~~ 326 (413)
.+.+++++|+|++++.++..+..+
T Consensus 179 ~~~~~~~~dva~~~~~~~~~~~~~ 202 (207)
T 2yut_A 179 PKGALSPEEAARKVLEGLFREPVP 202 (207)
T ss_dssp CTTCBCHHHHHHHHHHHHC--CCC
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCc
Confidence 357899999999999999876554
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=206.71 Aligned_cols=227 Identities=12% Similarity=0.033 Sum_probs=166.6
Q ss_pred CCCceEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG--~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+ |+||||||+| +||+++|++|+++|++|++++|.. ..+..+.+.+. ..++.++.+|++|.+++++++++
T Consensus 24 l~~-k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~~~ 97 (280)
T 3nrc_A 24 LAG-KKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAE---FNPAAVLPCDVISDQEIKDLFVEL 97 (280)
T ss_dssp TTT-CEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGG---GCCSEEEECCTTCHHHHHHHHHHH
T ss_pred cCC-CEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHh---cCCceEEEeecCCHHHHHHHHHHH
Confidence 446 8999999995 499999999999999999999865 33333333332 24589999999999999988866
Q ss_pred ----CCCcEEEEcCcccCcc---------CCcCChHHHHHHHHHHHHHHHHHHHHc---CCCEEEEeccceecCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVG---------ESTLDPLKYYHNITSNTLVVLESMARH---GVDTLIYSSTCATYGEPEKMP 207 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~---------~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~iV~~SS~~~~~~~~~~~ 207 (413)
.++|+||||||+.... ...++....+++|+.++.++++++... +.++||++||.+.+..
T Consensus 98 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~----- 172 (280)
T 3nrc_A 98 GKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKA----- 172 (280)
T ss_dssp HHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSC-----
T ss_pred HHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccC-----
Confidence 5799999999986531 223344557899999988877776543 3579999999877643
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcc
Q 015080 208 ITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGI 284 (413)
Q Consensus 208 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (413)
..+...|+.||++.+.+++.++.+ .|+++++++||.|.++..... .............
T Consensus 173 ------~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-------------~~~~~~~~~~~~~ 233 (280)
T 3nrc_A 173 ------MPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGI-------------SNFKKMLDYNAMV 233 (280)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGC-------------TTHHHHHHHHHHH
T ss_pred ------CCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcC-------------cchHHHHHHHHhc
Confidence 233678999999999999999887 689999999999998742210 1112222222222
Q ss_pred ccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCcc
Q 015080 285 IAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKGR 339 (413)
Q Consensus 285 ~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~~ 339 (413)
.+ ...+..++|+|+++++++... ....++++++.+|..+
T Consensus 234 ~p----------------~~~~~~pedvA~~v~~l~s~~~~~~tG~~i~vdgG~~~ 273 (280)
T 3nrc_A 234 SP----------------LKKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAGYHC 273 (280)
T ss_dssp ST----------------TCSCCCHHHHHHHHHHTTSGGGTTCCSCEEEESTTGGG
T ss_pred CC----------------CCCCCCHHHHHHHHHHHhCcccCCcCCcEEEECCCccc
Confidence 11 124678999999999988754 2235689999887654
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=203.40 Aligned_cols=221 Identities=11% Similarity=0.080 Sum_probs=160.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCE-EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH-HHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA-KAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~- 143 (413)
+.+ |+|+||||+||||++++++|+++|++ |++++|+.. .+..+.+.+... +.++.++.+|++|+ +++++++++
T Consensus 3 l~~-k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~--~~~~~~l~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T 1sby_A 3 LTN-KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVEN--PTALAELKAINP-KVNITFHTYDVTVPVAESKKLLKKI 78 (254)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCC--HHHHHHHHHHCT-TSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCC-cEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCch--HHHHHHHHHhCC-CceEEEEEEecCCChHHHHHHHHHH
Confidence 446 89999999999999999999999996 999887543 133334443322 35789999999998 888877754
Q ss_pred ----CCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHH----cC---CCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMAR----HG---VDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~---~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+. ..++.+..+++|+.++.++++++.. .+ .++||++||.+.+...
T Consensus 79 ~~~~g~id~lv~~Ag~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 145 (254)
T 1sby_A 79 FDQLKTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI--------- 145 (254)
T ss_dssp HHHHSCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC---------
T ss_pred HHhcCCCCEEEECCccC----CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCC---------
Confidence 4899999999975 2456788999999998887777653 22 4689999998876432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
.+...|+.||++.+.+++.++.+ .|+++++++||.|.++...... ... ...+... .....
T Consensus 146 --~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~--------~~~~~~~-~~~~~----- 208 (254)
T 1sby_A 146 --HQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFN-SWL--------DVEPRVA-ELLLS----- 208 (254)
T ss_dssp --TTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCC-CGG--------GSCTTHH-HHHTT-----
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccc-hhh--------hhhHHHH-HHHhc-----
Confidence 23678999999999999999877 6899999999999986321000 000 0000000 01110
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~ 337 (413)
..+.+++|+|++++.++..... +++|++.+|.
T Consensus 209 --------------~~~~~~~dvA~~i~~~~~~~~~--G~~~~v~gG~ 240 (254)
T 1sby_A 209 --------------HPTQTSEQCGQNFVKAIEANKN--GAIWKLDLGT 240 (254)
T ss_dssp --------------SCCEEHHHHHHHHHHHHHHCCT--TCEEEEETTE
T ss_pred --------------CCCCCHHHHHHHHHHHHHcCCC--CCEEEEeCCc
Confidence 1234899999999999985544 4799998773
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=203.98 Aligned_cols=172 Identities=15% Similarity=0.142 Sum_probs=134.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |++|||||+|+||++++++|+++|++|++++|+....+++.+.+.. .+.++.++.+|++|++++++++++
T Consensus 5 l~~-k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 80 (247)
T 2jah_A 5 LQG-KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTA---AGAKVHVLELDVADRQGVDAAVASTVE 80 (247)
T ss_dssp TTT-CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 446 8999999999999999999999999999998754333333333332 235789999999999999888764
Q ss_pred --CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+...... .++.+..+++|+.++.+++++ +++.+ ++||++||...+..
T Consensus 81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~----------- 148 (247)
T 2jah_A 81 ALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVN----------- 148 (247)
T ss_dssp HHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTCC-----------
T ss_pred HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcCC-----------
Confidence 589999999998644332 223455788999996665555 44556 89999999876532
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
..+...|+.||++.+.+++.++.+ .|+++++|+||.+.++.
T Consensus 149 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 192 (247)
T 2jah_A 149 VRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTEL 192 (247)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSG
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcc
Confidence 223678999999999999999877 58999999999998764
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=207.02 Aligned_cols=239 Identities=16% Similarity=0.128 Sum_probs=165.1
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC-CchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG-NIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+... .+.+.+.+.+ .+.++.++.+|++|.+++.+++++
T Consensus 26 ~~~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~ 101 (283)
T 1g0o_A 26 SLEG-KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKK---NGSDAACVKANVGVVEDIVRMFEEA 101 (283)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHH---hCCCeEEEEcCCCCHHHHHHHHHHH
Confidence 3456 899999999999999999999999999999875422 1122222322 245789999999999999887764
Q ss_pred ----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++... +.++||++||...+...
T Consensus 102 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~---------- 171 (283)
T 1g0o_A 102 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKA---------- 171 (283)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSS----------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccCC----------
Confidence 58999999999865432 23345567899999999999988876 56899999997764321
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCC-CCCcccccccchHHHHHHHHhcccccee
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGE-APRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
..+...|+.||++.+.+++.++.+ .|+++++|+||.|.++........ .+... ...+..........
T Consensus 172 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---- 242 (283)
T 1g0o_A 172 VPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGE-----NLSNEEVDEYAAVQ---- 242 (283)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCT-----TCCHHHHHHHHHHH----
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhcccccc-----ccCHHHHHHHHhhc----
Confidence 112678999999999999999877 589999999999988631000000 00000 00011111111100
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
......+.+.+|+|+++++++.... ...++++++.+|.
T Consensus 243 ----------~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdgG~ 281 (283)
T 1g0o_A 243 ----------WSPLRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGA 281 (283)
T ss_dssp ----------SCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred ----------CCCCCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCCc
Confidence 0011247899999999999997542 2345799997764
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-25 Score=200.67 Aligned_cols=202 Identities=16% Similarity=0.125 Sum_probs=141.4
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCC-CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
.||+||||||+|+||++++++|+++| ++|++++|+....... ...++.++.+|++|++++.+++ .++|
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~---------~~~~~~~~~~Dl~d~~~~~~~~--~~~D 90 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP---------YPTNSQIIMGDVLNHAALKQAM--QGQD 90 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS---------CCTTEEEEECCTTCHHHHHHHH--TTCS
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc---------ccCCcEEEEecCCCHHHHHHHh--cCCC
Confidence 35899999999999999999999999 8999998865432211 1247899999999999999999 6899
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCC--CCCCCCCCCCChhHHHHH
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMP--ITEETPQAPINPYGKAKK 225 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~--~~e~~~~~~~~~Y~~sK~ 225 (413)
+||||||... . ...+++++++|++.++++||++||..+|+...... ..+..+.. +...|.
T Consensus 91 ~vv~~a~~~~-------~-------~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 152 (236)
T 3qvo_A 91 IVYANLTGED-------L-------DIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAVIGE----PLKPFR 152 (236)
T ss_dssp EEEEECCSTT-------H-------HHHHHHHHHHHHHTTCCEEEEECCCCC----------------CG----GGHHHH
T ss_pred EEEEcCCCCc-------h-------hHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccchhhcccc----hHHHHH
Confidence 9999998521 1 13477899999999999999999999997654322 22222222 333344
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeee
Q 015080 226 MAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRD 305 (413)
Q Consensus 226 ~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 305 (413)
.+|..++ +.|+++++||||.++++.... + . .... .......
T Consensus 153 ~~~~~l~----~~gi~~~~vrPg~i~~~~~~~---------------~------------~-~~~~-------~~~~~~~ 193 (236)
T 3qvo_A 153 RAADAIE----ASGLEYTILRPAWLTDEDIID---------------Y------------E-LTSR-------NEPFKGT 193 (236)
T ss_dssp HHHHHHH----TSCSEEEEEEECEEECCSCCC---------------C------------E-EECT-------TSCCSCS
T ss_pred HHHHHHH----HCCCCEEEEeCCcccCCCCcc---------------e------------E-Eecc-------CCCCCCc
Confidence 4454443 489999999999999874210 0 0 0000 0111135
Q ss_pred cccHHHHHHHHHHHHHhcCCCCccEEEecCCCc
Q 015080 306 YIDVNDLVDAHVKALERAQPKKVGIYNVGTGKG 338 (413)
Q Consensus 306 ~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~ 338 (413)
+++++|+|++++.++..+....+++|++++++.
T Consensus 194 ~i~~~DvA~~i~~ll~~~~~~~g~~~~i~~~~~ 226 (236)
T 3qvo_A 194 IVSRKSVAALITDIIDKPEKHIGENIGINQPGT 226 (236)
T ss_dssp EEEHHHHHHHHHHHHHSTTTTTTEEEEEECSSC
T ss_pred EECHHHHHHHHHHHHcCcccccCeeEEecCCCC
Confidence 899999999999999987644568999988764
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=204.16 Aligned_cols=216 Identities=14% Similarity=0.087 Sum_probs=155.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-C
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-N 144 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~ 144 (413)
.+.+ |+||||||+||||++++++|+++|++|++++|+. + .++++ ..+.++ +|+ .++++++++. .
T Consensus 16 ~~~~-k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~----~---~~~~~----~~~~~~-~D~--~~~~~~~~~~~~ 80 (249)
T 1o5i_A 16 GIRD-KGVLVLAASRGIGRAVADVLSQEGAEVTICARNE----E---LLKRS----GHRYVV-CDL--RKDLDLLFEKVK 80 (249)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH----H---HHHHT----CSEEEE-CCT--TTCHHHHHHHSC
T ss_pred ccCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH----H---HHHhh----CCeEEE-eeH--HHHHHHHHHHhc
Confidence 4567 9999999999999999999999999999998753 1 22222 256677 999 3445555544 3
Q ss_pred CCcEEEEcCcccCccC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
++|+||||||+..... ..++.+..+++|+.+ ++.+++.|++.+.++||++||..++... .+
T Consensus 81 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------~~ 149 (249)
T 1o5i_A 81 EVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPI-----------EN 149 (249)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----------TT
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCCC-----------CC
Confidence 8999999999765432 223345578899988 4456777777788899999998877532 23
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHH-HHhccccceeEec
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFD-AARGIIAGLKVKG 292 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~g 292 (413)
...|+.||++.+.+++.++.+ .|+++++|+||.+.++... ...+.... ......+
T Consensus 150 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~p------ 208 (249)
T 1o5i_A 150 LYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVK---------------ELLSEEKKKQVESQIP------ 208 (249)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHH---------------HHSCHHHHHHHHTTST------
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCccc---------------ccchhhHHHHHHhcCC------
Confidence 678999999999999999887 6899999999999987411 01011111 1111111
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...+++++|+|+++++++.... ...+++|++.+|..
T Consensus 209 ----------~~~~~~~~dvA~~i~~l~s~~~~~~tG~~~~vdgG~~ 245 (249)
T 1o5i_A 209 ----------MRRMAKPEEIASVVAFLCSEKASYLTGQTIVVDGGLS 245 (249)
T ss_dssp ----------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTCC
T ss_pred ----------CCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCcc
Confidence 1357899999999999887532 23457999987753
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=203.73 Aligned_cols=214 Identities=14% Similarity=0.136 Sum_probs=160.7
Q ss_pred ceEEEEEcCCChHHHHHHHHHHH-CCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---CC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---NA 145 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---~~ 145 (413)
||++|||||+||||++++++|++ .|++|++++|..... ...+.++.+|++|+++++++++. .+
T Consensus 4 ~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 70 (244)
T 4e4y_A 4 MANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS-------------AENLKFIKADLTKQQDITNVLDIIKNVS 70 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC-------------CTTEEEEECCTTCHHHHHHHHHHTTTCC
T ss_pred CCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc-------------cccceEEecCcCCHHHHHHHHHHHHhCC
Confidence 38999999999999999999999 789999988754422 14678999999999999988853 37
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHcC--CCEEEEeccceecCCCCCCCCCCCCCCCCCCh
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARHG--VDTLIYSSTCATYGEPEKMPITEETPQAPINP 219 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~ 219 (413)
+|+||||||+..... ..++.+..+++|+.++.++++++...- .++||++||...+... .+..+
T Consensus 71 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-----------~~~~~ 139 (244)
T 4e4y_A 71 FDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAK-----------PNSFA 139 (244)
T ss_dssp EEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCC-----------TTBHH
T ss_pred CCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCC-----------CCCch
Confidence 999999999865433 223345578999999999999887641 2589999998776432 23678
Q ss_pred hHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHH-----------HHHHHhccc
Q 015080 220 YGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGA-----------CFDAARGII 285 (413)
Q Consensus 220 Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 285 (413)
|+.||++.+.+++.++.+ +|+++++|+||.|.++... .+... ......
T Consensus 140 Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~---------------~~~~~~~~~~~~~~~~~~~~~~--- 201 (244)
T 4e4y_A 140 YTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYR---------------NLIQKYANNVGISFDEAQKQEE--- 201 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHH---------------HHHHHHHHHHTCCHHHHHHHHH---
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhH---------------HHHHhhhhhcCCCHHHHHHHHh---
Confidence 999999999999999886 6899999999999875310 11111 111111
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCc
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKG 338 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~ 338 (413)
.......+.+++|+|+++++++..... ..++++++.+|..
T Consensus 202 -------------~~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~~ 242 (244)
T 4e4y_A 202 -------------KEFPLNRIAQPQEIAELVIFLLSDKSKFMTGGLIPIDGGYT 242 (244)
T ss_dssp -------------TTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred -------------hcCCCCCCcCHHHHHHHHHHHhcCccccccCCeEeECCCcc
Confidence 111224578999999999999975432 3458999987754
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-26 Score=207.14 Aligned_cols=229 Identities=13% Similarity=0.081 Sum_probs=159.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----- 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 143 (413)
|++|||||+|+||++++++|+++| +.|++++|+.. ...+...+. +.++.++.+|++|++++++++++
T Consensus 3 k~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~---~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (254)
T 3kzv_A 3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEA---PLKKLKEKY---GDRFFYVVGDITEDSVLKQLVNAAVKGH 76 (254)
T ss_dssp CEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHH---HHHHHHHHH---GGGEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHH---HHHHHHHHh---CCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999985 78888876433 222222222 35789999999999999988865
Q ss_pred CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||+... .. ..++.+..+++|+.++.++++++ ++.+ ++||++||...+.. .
T Consensus 77 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~~-----------~ 144 (254)
T 3kzv_A 77 GKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNMY-----------F 144 (254)
T ss_dssp SCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCCS-----------S
T ss_pred CCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhccC-----------C
Confidence 589999999998543 22 22334557889999976665554 6666 79999999876532 2
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh-CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 215 APINPYGKAKKMAEDIILDFSKN-SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~-~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.|.++.......... + ....+..........+
T Consensus 145 ~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~------- 211 (254)
T 3kzv_A 145 SSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVG-P-----SSMSAEQLKMFRGLKE------- 211 (254)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCC-T-----TTSCHHHHHHHHHHHT-------
T ss_pred CCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccC-c-----cccCHHHHHHHHHHHh-------
Confidence 33678999999999999999988 59999999999999875432111000 0 0111222222222111
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhcC--CCCccEEEecCCCcc
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERAQ--PKKVGIYNVGTGKGR 339 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~--~~~~~~yni~~~~~~ 339 (413)
...+.+++|+|+++++++.... ...++.+++.+++..
T Consensus 212 ---------~~r~~~p~dva~~v~~L~s~~~~~~itG~~i~vdg~~~~ 250 (254)
T 3kzv_A 212 ---------NNQLLDSSVPATVYAKLALHGIPDGVNGQYLSYNDPALA 250 (254)
T ss_dssp ---------TC----CHHHHHHHHHHHHHCCCGGGTTCEEETTCGGGG
T ss_pred ---------cCCcCCcccHHHHHHHHHhhcccCCCCccEEEecCcccc
Confidence 1246788999999999998652 234578988766543
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-26 Score=203.98 Aligned_cols=210 Identities=16% Similarity=0.124 Sum_probs=157.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-CC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-NA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~ 145 (413)
+++ |++|||||+|+||++++++|+++|++|++++|+.. +|++|++++++++++ .+
T Consensus 4 ~~~-k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-----------------------~D~~~~~~v~~~~~~~g~ 59 (223)
T 3uce_A 4 SDK-TVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG-----------------------LDISDEKSVYHYFETIGA 59 (223)
T ss_dssp -CC-EEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT-----------------------CCTTCHHHHHHHHHHHCS
T ss_pred CCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc-----------------------cCCCCHHHHHHHHHHhCC
Confidence 345 89999999999999999999999999999876321 899999999999876 58
Q ss_pred CcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQAPIN 218 (413)
Q Consensus 146 ~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~ 218 (413)
+|+||||||+... .. ..++.+..+++|+.++.++++++... ..++||++||...+.. ..+..
T Consensus 60 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-----------~~~~~ 128 (223)
T 3uce_A 60 FDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKV-----------VANTY 128 (223)
T ss_dssp EEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSC-----------CTTCH
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccC-----------CCCch
Confidence 9999999997632 22 22334557889999999999988764 2359999999877643 23367
Q ss_pred hhHHHHHHHHHHHHHHHhhCC-CcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccC
Q 015080 219 PYGKAKKMAEDIILDFSKNSD-MAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST 297 (413)
Q Consensus 219 ~Y~~sK~~~e~~~~~~~~~~g-i~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 297 (413)
+|+.||++.+.+++.++.+.+ +++++++||.+.++...... ...............+
T Consensus 129 ~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~-----------~~~~~~~~~~~~~~~~----------- 186 (223)
T 3uce_A 129 VKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMN-----------ADDRDAMYQRTQSHLP----------- 186 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSC-----------HHHHHHHHHHHHHHST-----------
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcc-----------hhhHHHHHHHHhhcCC-----------
Confidence 899999999999999999844 99999999999987422100 0111112222222211
Q ss_pred CCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcc
Q 015080 298 ADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGR 339 (413)
Q Consensus 298 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~ 339 (413)
...+.+++|+|+++++++.. ....++++++.+|..+
T Consensus 187 -----~~~~~~~~dvA~~~~~l~~~-~~~tG~~i~vdgG~~~ 222 (223)
T 3uce_A 187 -----VGKVGEASDIAMAYLFAIQN-SYMTGTVIDVDGGALL 222 (223)
T ss_dssp -----TCSCBCHHHHHHHHHHHHHC-TTCCSCEEEESTTGGG
T ss_pred -----CCCccCHHHHHHHHHHHccC-CCCCCcEEEecCCeec
Confidence 23578899999999999984 3334689999887654
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=203.15 Aligned_cols=217 Identities=17% Similarity=0.134 Sum_probs=152.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+|+||++++++|+++|++|++++|+.. ...+...++ +.++.++.+|++|++++++++++ .+
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~---~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 74 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQE---RLQELKDEL---GDNLYIAQLDVRNRAAIEEMLASLPAEWCN 74 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHTSCTTTCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHHHh---cCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 57999999999999999999999999999987532 222333333 24688999999999999998875 37
Q ss_pred CcEEEEcCcccC-ccC----CcCChHHHHHHHHHHHHHH----HHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAY-VGE----STLDPLKYYHNITSNTLVV----LESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~~~-~~~----~~~~~~~~~~~n~~~~~~l----l~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
+|+||||||+.. ... ..++.+..+++|+.++.++ ++.|++.+.++||++||...+.. ..+
T Consensus 75 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~-----------~~~ 143 (248)
T 3asu_A 75 IDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWP-----------YAG 143 (248)
T ss_dssp CCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC-----------CTT
T ss_pred CCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccC-----------CCC
Confidence 999999999753 111 2234556789999996554 45555667789999999876532 233
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceec-CCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIG-SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
...|+.||++.+.+++.++.+ .|+++++|+||.|.| +.... .+... ..... . .
T Consensus 144 ~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~--------------~~~~~-~~~~~---~-~---- 200 (248)
T 3asu_A 144 GNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNV--------------RFKGD-DGKAE---K-T---- 200 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC-----------------------------------------
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhh--------------cccCc-hHHHH---H-H----
Confidence 678999999999999999887 589999999999994 42110 00000 00000 0 0
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecC
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGT 335 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~ 335 (413)
.....++..+|+|+++++++.......+..+.+..
T Consensus 201 --------~~~~~~~~p~dvA~~v~~l~s~~~~~~g~~i~v~~ 235 (248)
T 3asu_A 201 --------YQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMP 235 (248)
T ss_dssp ------------CCBCHHHHHHHHHHHHHSCTTCCCCEEEECC
T ss_pred --------HhccCCCCHHHHHHHHHHHhcCCccceeeEEEEcc
Confidence 00113468999999999999865544556666643
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=206.45 Aligned_cols=172 Identities=17% Similarity=0.157 Sum_probs=132.8
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+....+++.+.+ ...+.++.++.+|++|++++++++++
T Consensus 5 l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (262)
T 1zem_A 5 FNG-KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASV---REKGVEARSYVCDVTSEEAVIGTVDSVVR 80 (262)
T ss_dssp TTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---HTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---HhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 446 89999999999999999999999999999987543333333333 22245789999999999999887764
Q ss_pred --CCCcEEEEcCccc-CccC----CcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVA-YVGE----STLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~-~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+. .... ..++.+..+++|+.++.+++++ +++.+.++||++||...+...
T Consensus 81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 151 (262)
T 1zem_A 81 DFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGP--------- 151 (262)
T ss_dssp HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCC---------
T ss_pred HhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCC---------
Confidence 4899999999976 3222 2233456788999996665555 445567899999998766432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.+..+
T Consensus 152 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~ 193 (262)
T 1zem_A 152 --PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPG 193 (262)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSS
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcc
Confidence 22568999999999999999876 5899999999998765
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=212.83 Aligned_cols=175 Identities=15% Similarity=0.066 Sum_probs=134.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+||||++++++|+++|++|++++|+..+.+++.+.+..... +..+.++.+|++|.++++++++.
T Consensus 6 l~~-k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (319)
T 3ioy_A 6 FAG-RTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGS-GPEVMGVQLDVASREGFKMAADEVEA 83 (319)
T ss_dssp CTT-CEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 445 8999999999999999999999999999999865554444444444321 13789999999999999988865
Q ss_pred --CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHc------CCCEEEEeccceecCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARH------GVDTLIYSSTCATYGEPEKMP 207 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~------~~~~iV~~SS~~~~~~~~~~~ 207 (413)
.++|+||||||+..... ..++.+..+++|+.|+.++++++ .+. +.++||++||.+.+....
T Consensus 84 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~~--- 160 (319)
T 3ioy_A 84 RFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAG--- 160 (319)
T ss_dssp HTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCCS---
T ss_pred hCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCCC---
Confidence 47999999999865433 22345568899999977766554 333 367999999988764332
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 208 ITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 208 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
....|+.||++.+.+++.++.+ .|+++++|+||.|.++.
T Consensus 161 --------~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 202 (319)
T 3ioy_A 161 --------SPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYI 202 (319)
T ss_dssp --------SSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC---
T ss_pred --------CCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCc
Confidence 2578999999999988888766 58999999999999874
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-26 Score=208.40 Aligned_cols=223 Identities=19% Similarity=0.162 Sum_probs=163.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+.. ...+..+++ ..++.++.+|++|++++++++++
T Consensus 4 l~~-k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~---~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (263)
T 2a4k_A 4 LSG-KTILVTGAASGIGRAALDLFAREGASLVAVDREER---LLAEAVAAL---EAEAIAVVADVSDPKAVEAVFAEALE 76 (263)
T ss_dssp TTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHTC---CSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHHHh---cCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 345 89999999999999999999999999999987532 222222222 24688999999999999888765
Q ss_pred --CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHHcC--CCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMARHG--VDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
.++|+||||||+...... .++.+..+++|+.++.++++++...- .++||++||...++ ..
T Consensus 77 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-~~----------- 144 (263)
T 2a4k_A 77 EFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG-AF----------- 144 (263)
T ss_dssp HHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC-HH-----------
T ss_pred HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcC-CC-----------
Confidence 579999999998654322 22335578899999888888876642 57999999987762 11
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
+...|+.||++.+.+++.++.+ .|+++++|+||.|.++... .+.+..........+
T Consensus 145 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~p------ 203 (263)
T 2a4k_A 145 GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTA---------------GLPPWAWEQEVGASP------ 203 (263)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGT---------------TSCHHHHHHHHHTST------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhh---------------hcCHHHHHHHHhcCC------
Confidence 2568999999999999999877 5899999999999987421 111112222222111
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
...+++.+|+|+++++++.... ...++++++.+|...
T Consensus 204 ----------~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdgG~~~ 241 (263)
T 2a4k_A 204 ----------LGRAGRPEEVAQAALFLLSEESAYITGQALYVDGGRSI 241 (263)
T ss_dssp ----------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTT
T ss_pred ----------CCCCcCHHHHHHHHHHHhCccccCCcCCEEEECCCccc
Confidence 1246899999999999987542 234579999877654
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-26 Score=210.53 Aligned_cols=232 Identities=18% Similarity=0.077 Sum_probs=160.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+... ..+...++ .++.++.+|++|++++++++++
T Consensus 7 l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~~ 78 (270)
T 1yde_A 7 YAG-KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESG---GRALEQEL----PGAVFILCDVTQEDDVKTLVSETIR 78 (270)
T ss_dssp TTT-CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHC----TTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHh----cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 446 899999999999999999999999999999875322 22222222 3488999999999999988764
Q ss_pred --CCCcEEEEcCcccCc-cC----CcCChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYV-GE----STLDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+... .. ..++.+..+++|+.++.++++++. +. .++||++||...+...
T Consensus 79 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~~--------- 148 (270)
T 1yde_A 79 RFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS-QGNVINISSLVGAIGQ--------- 148 (270)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCHHHHHCC---------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC-CCEEEEEcCccccCCC---------
Confidence 489999999997542 11 122345678899999777766664 33 5799999997654221
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
.+..+|+.||++.+.+++.++.+ +|+++++|+||.|+++.......... .....+.... ...+
T Consensus 149 --~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~--------~~~~~~~~~~-~~~p--- 214 (270)
T 1yde_A 149 --AQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMP--------DPRASIREGM-LAQP--- 214 (270)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSS--------SHHHHHHHHH-HTST---
T ss_pred --CCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhccc--------chHHHHHHHh-hcCC---
Confidence 12568999999999999999877 68999999999999863100000000 0000011000 0011
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHH
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKE 343 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e 343 (413)
...+...+|+|+++++++.......++++++.+|.......
T Consensus 215 -------------~~r~~~p~dva~~v~~L~s~~~~itG~~i~vdGG~~~~~~~ 255 (270)
T 1yde_A 215 -------------LGRMGQPAEVGAAAVFLASEANFCTGIELLVTGGAELGYGC 255 (270)
T ss_dssp -------------TSSCBCHHHHHHHHHHHHHHCTTCCSCEEEESTTTTSCC--
T ss_pred -------------CCCCcCHHHHHHHHHHHcccCCCcCCCEEEECCCeecccCc
Confidence 12467899999999998876333356799998887665433
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-25 Score=201.95 Aligned_cols=229 Identities=14% Similarity=0.064 Sum_probs=166.8
Q ss_pred CCCCceEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 66 HEEGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG--~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
++++ |++|||||+| +||.++|+.|+++|++|++++|+.+..+++.+.+.+.. +.++.++++|++|++++++++++
T Consensus 3 ~l~g-K~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~ 79 (256)
T 4fs3_A 3 NLEN-KTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN--QPEAHLYQIDVQSDEEVINGFEQ 79 (256)
T ss_dssp CCTT-CEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT--CSSCEEEECCTTCHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCcEEEEEccCCCHHHHHHHHHH
Confidence 5678 9999999876 99999999999999999999987666566666655542 24789999999999999888765
Q ss_pred -----CCCcEEEEcCcccCccC----C-cCCh---HHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCC
Q 015080 144 -----NAFDAVMHFAAVAYVGE----S-TLDP---LKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~~~----~-~~~~---~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~ 208 (413)
.++|++|||||+..... . +... ...+++|+.++..+...+... +.++||++||....-.
T Consensus 80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~------ 153 (256)
T 4fs3_A 80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFA------ 153 (256)
T ss_dssp HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSC------
T ss_pred HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccC------
Confidence 78999999999764322 1 1222 335678888877766666543 3579999999765432
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
.+....|+.||++.+.+++.++.| +||++++|.||.|-.+..... .-.+...+......
T Consensus 154 -----~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~-------------~~~~~~~~~~~~~~ 215 (256)
T 4fs3_A 154 -----VQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGV-------------GGFNTILKEIKERA 215 (256)
T ss_dssp -----CTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTC-------------TTHHHHHHHHHHHS
T ss_pred -----cccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhc-------------cCCHHHHHHHHhcC
Confidence 223678999999999999999988 689999999999887643211 11123333333322
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
| + ..+...+|+|+++++++.... --.++++.+.+|.
T Consensus 216 P-l---------------~R~g~peevA~~v~fL~Sd~a~~iTG~~i~VDGG~ 252 (256)
T 4fs3_A 216 P-L---------------KRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSGF 252 (256)
T ss_dssp T-T---------------SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred C-C---------------CCCcCHHHHHHHHHHHhCchhcCccCCEEEECcCH
Confidence 2 1 135678999999999886433 2356799887764
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-25 Score=204.64 Aligned_cols=227 Identities=12% Similarity=0.036 Sum_probs=164.8
Q ss_pred CCCceEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGas--G~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+ |+||||||+ |+||++++++|+++|++|++++|+.. ..+..+.+.+.. ..+.++.+|++|++++++++++
T Consensus 4 l~~-k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~ 78 (275)
T 2pd4_A 4 LKG-KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQEL---NSPYVYELDVSKEEHFKSLYNSV 78 (275)
T ss_dssp TTT-CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhc---CCcEEEEcCCCCHHHHHHHHHHH
Confidence 345 899999999 99999999999999999999998654 333333333321 2478899999999999888765
Q ss_pred ----CCCcEEEEcCcccCc--------cCCcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYV--------GESTLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~--------~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|+||||||+... ....++.+..+++|+.++.++++++... ..++||++||...+..
T Consensus 79 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------- 151 (275)
T 2pd4_A 79 KKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKY------- 151 (275)
T ss_dssp HHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSB-------
T ss_pred HHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCC-------
Confidence 479999999998643 1123345568899999999999998765 2369999999766532
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
..+..+|+.||++.+.+++.++.+ .|+++++|+||.|.++..... ...+..........+
T Consensus 152 ----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~p 214 (275)
T 2pd4_A 152 ----MAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGI-------------ADFRMILKWNEINAP 214 (275)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGS-------------TTHHHHHHHHHHHST
T ss_pred ----CCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhc-------------cccHHHHHHHHhcCC
Confidence 223678999999999999999887 489999999999998742110 011122222222111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...+.+++|+|+++++++.... ...++++++.++..
T Consensus 215 ----------------~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgg~~ 251 (275)
T 2pd4_A 215 ----------------LRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYH 251 (275)
T ss_dssp ----------------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ----------------cCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 1135789999999999987532 23457899977643
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=209.54 Aligned_cols=214 Identities=15% Similarity=0.128 Sum_probs=153.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |++|||||+|+||.+++++|+++|++|++++|+....+++.+.+.+.. +..+.++.+|++|++++++++++
T Consensus 31 l~g-k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~ 107 (281)
T 4dry_A 31 GEG-RIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT--GNIVRAVVCDVGDPDQVAALFAAVRA 107 (281)
T ss_dssp ----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 456 999999999999999999999999999999986544444444443321 12358999999999999888865
Q ss_pred --CCCcEEEEcCcccCcc-C----CcCChHHHHHHHHHHHH----HHHHHHHHcC--CCEEEEeccceecCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVG-E----STLDPLKYYHNITSNTL----VVLESMARHG--VDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~-~----~~~~~~~~~~~n~~~~~----~ll~~~~~~~--~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
.++|+||||||+.... . ..++.+..+++|+.++. .+++.+++.+ .++||++||...+..
T Consensus 108 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~-------- 179 (281)
T 4dry_A 108 EFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTP-------- 179 (281)
T ss_dssp HHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCC--------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCC--------
Confidence 5899999999985431 1 23344558889999954 4555666654 579999999776532
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
..+...|+.||++.+.+++.++.+ .|+++++|+||.|..+... .......
T Consensus 180 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~-----------------------~~~~~~~- 232 (281)
T 4dry_A 180 ---RPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTA-----------------------RMSTGVL- 232 (281)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC------------------------------CEEE-
T ss_pred ---CCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhh-----------------------hhcchhh-
Confidence 234678999999999999999887 6899999999999876321 0000000
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCC
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK 326 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~ 326 (413)
. .. .......++.++|+|+++++++..+...
T Consensus 233 -~-~~------~~~~~~~~~~pedvA~~v~fL~s~~~~~ 263 (281)
T 4dry_A 233 -Q-AN------GEVAAEPTIPIEHIAEAVVYMASLPLSA 263 (281)
T ss_dssp -C-TT------SCEEECCCBCHHHHHHHHHHHHHSCTTE
T ss_pred -h-hh------hcccccCCCCHHHHHHHHHHHhCCCccC
Confidence 0 00 1112235789999999999999976653
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-25 Score=205.32 Aligned_cols=221 Identities=16% Similarity=0.088 Sum_probs=158.8
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchh----hhhhhhhcCCCCceEEEEccCCCHHHHHHHh
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGA----VKVLQELFPEPGRLQFIYADLGDAKAVNKFF 141 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 141 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+..+.+++ .+...++...+.++.++.+|++|++++++++
T Consensus 6 ~l~~-k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 84 (285)
T 3sc4_A 6 SLRG-KTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAV 84 (285)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHH
T ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 4566 9999999999999999999999999999999876643332 1222222222467999999999999999888
Q ss_pred hc-----CCCcEEEEcCcccCccCCc----CChHHHHHHHHHHHHHHHHHHHH----cCCCEEEEeccceecCCCCCCCC
Q 015080 142 SE-----NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLVVLESMAR----HGVDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 142 ~~-----~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~ll~~~~~----~~~~~iV~~SS~~~~~~~~~~~~ 208 (413)
++ .++|+||||||+....... ++.+..+++|+.++.++++++.. .+.++||++||...+...
T Consensus 85 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~----- 159 (285)
T 3sc4_A 85 AKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPK----- 159 (285)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGG-----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCC-----
Confidence 65 4899999999987544322 23345677999998887777654 366899999997654321
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
..+...|+.||++.+.+++.++.+ .|+++++|+||.+... .+. .......
T Consensus 160 -----~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t------------------~~~----~~~~~~~ 212 (285)
T 3sc4_A 160 -----WLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVAT------------------AAV----QNLLGGD 212 (285)
T ss_dssp -----GSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCC------------------HHH----HHHHTSC
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCcccc------------------HHH----Hhhcccc
Confidence 123578999999999999999988 6899999999953321 111 1111111
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEec
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVG 334 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~ 334 (413)
.....+...+|+|+++++++.......++++.+.
T Consensus 213 ---------------~~~~r~~~pedvA~~~~~l~s~~~~~tG~~i~~d 246 (285)
T 3sc4_A 213 ---------------EAMARSRKPEVYADAAYVVLNKPSSYTGNTLLCE 246 (285)
T ss_dssp ---------------CCCTTCBCTHHHHHHHHHHHTSCTTCCSCEEEHH
T ss_pred ---------------ccccCCCCHHHHHHHHHHHhCCcccccceEEEEc
Confidence 1122467889999999999986553334555443
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-25 Score=201.05 Aligned_cols=215 Identities=18% Similarity=0.174 Sum_probs=155.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+|+||++++++|+++|++|++++|+... .. +++ ++.++.+|++| +++++++++ .+
T Consensus 3 k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~---~~---~~~-----~~~~~~~D~~~-~~~~~~~~~~~~~~g~ 70 (239)
T 2ekp_A 3 RKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE---AA---QSL-----GAVPLPTDLEK-DDPKGLVKRALEALGG 70 (239)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HH---HHH-----TCEEEECCTTT-SCHHHHHHHHHHHHTS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HH---Hhh-----CcEEEecCCch-HHHHHHHHHHHHHcCC
Confidence 799999999999999999999999999999875422 22 222 27889999999 877766543 58
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHH----HHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLE----SMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||+..... ..++.+..+++|+.++.++++ .|++.+.++||++||...+.... ..+.
T Consensus 71 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------~~~~ 141 (239)
T 2ekp_A 71 LHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGG---------PVPI 141 (239)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT---------TSCC
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCC---------CCCC
Confidence 999999999764432 223345678899999655554 45666788999999988764321 1346
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccch--HHHHHHHHhccccceeEec
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRI--SGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~g 292 (413)
..|+.||++.+.+++.++.+ .|+++++|+||.+.++... .. .+..........+
T Consensus 142 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~~p------ 200 (239)
T 2ekp_A 142 PAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTL---------------PLRQNPELYEPITARIP------ 200 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGH---------------HHHTCHHHHHHHHTTCT------
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhh---------------ccccCHHHHHHHHhcCC------
Confidence 78999999999999999887 4899999999999886311 00 0111122221111
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...+.+++|+|+++++++.... ...++++++.+|.
T Consensus 201 ----------~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 236 (239)
T 2ekp_A 201 ----------MGRWARPEEIARVAAVLCGDEAEYLTGQAVAVDGGF 236 (239)
T ss_dssp ----------TSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred ----------CCCCcCHHHHHHHHHHHcCchhcCCCCCEEEECCCc
Confidence 1247899999999999987532 2345789997764
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-25 Score=200.18 Aligned_cols=220 Identities=12% Similarity=0.069 Sum_probs=158.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
+++| |++|||||+++||+++|+.|+++|++|++++|..... .....++++|++|+++++++++.
T Consensus 8 ~L~G-K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~-------------~~~~~~~~~Dv~~~~~v~~~~~~~~ 73 (261)
T 4h15_A 8 NLRG-KRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG-------------LPEELFVEADLTTKEGCAIVAEATR 73 (261)
T ss_dssp CCTT-CEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT-------------SCTTTEEECCTTSHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC-------------CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 5678 9999999999999999999999999999999854321 13345788999999999887765
Q ss_pred ---CCCcEEEEcCcccCcc--C----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVG--E----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~--~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
+++|+||||||+.... . ..++.+..+++|+.+ ++.+++.|++++.++||++||....-..
T Consensus 74 ~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~------- 146 (261)
T 4h15_A 74 QRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPL------- 146 (261)
T ss_dssp HHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCC-------
Confidence 6899999999975431 1 223445578899988 5667788888888899999997654211
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHH--------
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFD-------- 279 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 279 (413)
+.....|+.||++.+.+++.++.| +||++++|.||.|-.|... .+......
T Consensus 147 ---~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~---------------~~~~~~~~~~~~~~~~ 208 (261)
T 4h15_A 147 ---PESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASV---------------RLAERLAKQAGTDLEG 208 (261)
T ss_dssp ---TTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHH---------------HHHHHHHHHTTCCHHH
T ss_pred ---CCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchh---------------hhhHHHHHhhccchhh
Confidence 112567999999999999999988 7899999999998764210 11111000
Q ss_pred ---HHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 280 ---AARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 280 ---~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...... .......+...+|+|+++++++.... --.++++.+.+|-
T Consensus 209 ~~~~~~~~~-------------~~~PlgR~g~peevA~~v~fLaS~~a~~itG~~i~VDGG~ 257 (261)
T 4h15_A 209 GKKIIMDGL-------------GGIPLGRPAKPEEVANLIAFLASDRAASITGAEYTIDGGT 257 (261)
T ss_dssp HHHHHHHHT-------------TCCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred HHHHHHHHh-------------cCCCCCCCcCHHHHHHHHHHHhCchhcCccCcEEEECCcC
Confidence 000000 11112246789999999999886433 2356799997663
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=207.53 Aligned_cols=226 Identities=15% Similarity=0.149 Sum_probs=164.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++.+ |++|||||+|+||++++++|+++|++|++++|+... ..+...++ +.++.++.+|++|.++++++++.
T Consensus 27 ~l~~-k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~---~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~ 99 (281)
T 3ppi_A 27 QFEG-ASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEK---GKALADEL---GNRAEFVSTNVTSEDSVLAAIEAAN 99 (281)
T ss_dssp GGTT-EEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHT
T ss_pred ccCC-CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHH---HHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 4556 999999999999999999999999999999875433 33333333 35799999999999999988865
Q ss_pred --CCCcEEEEc-CcccCccC---------CcCChHHHHHHHHHHHHHHHHHHH----H------cCCCEEEEeccceecC
Q 015080 144 --NAFDAVMHF-AAVAYVGE---------STLDPLKYYHNITSNTLVVLESMA----R------HGVDTLIYSSTCATYG 201 (413)
Q Consensus 144 --~~~dvvi~~-Ag~~~~~~---------~~~~~~~~~~~n~~~~~~ll~~~~----~------~~~~~iV~~SS~~~~~ 201 (413)
.++|+|||| ||+..... ..+..+..+++|+.++.++++++. + .+.++||++||...+.
T Consensus 100 ~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 179 (281)
T 3ppi_A 100 QLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYE 179 (281)
T ss_dssp TSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTS
T ss_pred HhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccC
Confidence 479999999 55443221 112246688899999777766654 2 3456999999988764
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHH
Q 015080 202 EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACF 278 (413)
Q Consensus 202 ~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (413)
.. .+...|+.||++.+.+++.++.+ .|+++++|+||.|..+... .+.+...
T Consensus 180 ~~-----------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~---------------~~~~~~~ 233 (281)
T 3ppi_A 180 GQ-----------IGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIME---------------SVGEEAL 233 (281)
T ss_dssp CC-----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH---------------TTCHHHH
T ss_pred CC-----------CCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhh---------------cccHHHH
Confidence 32 23678999999999999999888 5899999999999875311 1112222
Q ss_pred HHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCccc
Q 015080 279 DAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRS 340 (413)
Q Consensus 279 ~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s 340 (413)
.......+ . ...+++++|+|+++++++... ...++++++.+|..++
T Consensus 234 ~~~~~~~~---~------------~~~~~~pedvA~~v~~l~s~~-~~tG~~i~vdGG~~~~ 279 (281)
T 3ppi_A 234 AKFAANIP---F------------PKRLGTPDEFADAAAFLLTNG-YINGEVMRLDGAQRFT 279 (281)
T ss_dssp HHHHHTCC---S------------SSSCBCHHHHHHHHHHHHHCS-SCCSCEEEESTTCCCC
T ss_pred HHHHhcCC---C------------CCCCCCHHHHHHHHHHHHcCC-CcCCcEEEECCCcccC
Confidence 22222211 1 135789999999999999853 3356899998887653
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=201.12 Aligned_cols=165 Identities=15% Similarity=0.100 Sum_probs=126.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|+||||||+|+||++++++|+++|++|++++|+.. ...+...++ .++.++.+|++|.++++++++. .+
T Consensus 6 k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~---~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (234)
T 2ehd_A 6 GAVLITGASRGIGEATARLLHAKGYRVGLMARDEK---RLQALAAEL----EGALPLPGDVREEGDWARAVAAMEEAFGE 78 (234)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHHS----TTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHH---HHHHHHHHh----hhceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 78999999999999999999999999999987532 222222222 2688999999999999888764 48
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHH----HHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTL----VVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~----~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||+..... ..++.+..+++|+.++. .+++.+++.+.++||++||..++.. ..+.
T Consensus 79 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~-----------~~~~ 147 (234)
T 2ehd_A 79 LSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNP-----------FKGG 147 (234)
T ss_dssp CCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSC-----------CTTC
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCC-----------CCCC
Confidence 999999999764332 22334567889999975 5666677777889999999876642 2336
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
..|+.||++.+.+++.++.+ .|+++++++||.+.++
T Consensus 148 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~ 186 (234)
T 2ehd_A 148 AAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTG 186 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC-----
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCC
Confidence 78999999999999988876 6899999999998765
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=202.93 Aligned_cols=197 Identities=16% Similarity=0.154 Sum_probs=145.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+||||++++++|+++|++|++++|+....+ +...++ +.++.++.+|++|++++++++++ .+
T Consensus 4 k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~---~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 77 (235)
T 3l6e_A 4 GHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQ---QQELLL---GNAVIGIVADLAHHEDVDVAFAAAVEWGGL 77 (235)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH---HHHHHH---GGGEEEEECCTTSHHHHHHHHHHHHHHHCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH---HHHHHh---cCCceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999987543333 222222 23689999999999999988765 58
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||+..... ..++.+..+++|+.++.++++++ ++.+ ++||++||...+... .+.
T Consensus 78 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~iv~isS~~~~~~~-----------~~~ 145 (235)
T 3l6e_A 78 PELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG-GVLANVLSSAAQVGK-----------ANE 145 (235)
T ss_dssp CSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-EEEEEECCEECCSSC-----------SSH
T ss_pred CcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEEeCHHhcCCC-----------CCC
Confidence 999999999864432 23345567899999976655555 4444 499999997765322 235
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
..|+.||++.+.+++.++.+ .|+++++++||.|-.+... .. .. .
T Consensus 146 ~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~-------------------~~----~~-~--------- 192 (235)
T 3l6e_A 146 SLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWD-------------------NT----DH-V--------- 192 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC----------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchh-------------------cc----CC-C---------
Confidence 78999999999999999987 5899999999999775311 00 00 0
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhcCC
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQP 325 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 325 (413)
....++.++|+|+++++++..+..
T Consensus 193 -------~~~~~~~pedvA~~v~~l~~~~~~ 216 (235)
T 3l6e_A 193 -------DPSGFMTPEDAAAYMLDALEARSS 216 (235)
T ss_dssp -----------CBCHHHHHHHHHHHTCCCSS
T ss_pred -------CCcCCCCHHHHHHHHHHHHhCCCC
Confidence 011468999999999999985443
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-25 Score=200.08 Aligned_cols=229 Identities=18% Similarity=0.116 Sum_probs=165.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|+++++ ++.+...+...++...+..+.++.+|++|.++++++++.
T Consensus 5 l~~-k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (255)
T 3icc_A 5 LKG-KVALVTGASRGIGRAIAKRLANDGALVAIHYG--NRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDN 81 (255)
T ss_dssp TTT-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEES--SCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCC-CEEEEECCCChHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHH
Confidence 456 99999999999999999999999999988653 223333333333333356789999999999998887754
Q ss_pred --------CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCC
Q 015080 144 --------NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 --------~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|+||||||+...... .+..+..+++|+.++.++++++... +.++||++||...+...
T Consensus 82 ~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~------ 155 (255)
T 3icc_A 82 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL------ 155 (255)
T ss_dssp HHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCC------
T ss_pred HhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCC------
Confidence 249999999998654332 2234457889999999999988764 35699999998776432
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
.....|+.||++.+.+++.++.+ .|+++++++||.|..+...... -.+..........+
T Consensus 156 -----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-------------~~~~~~~~~~~~~~ 217 (255)
T 3icc_A 156 -----PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELL-------------SDPMMKQYATTISA 217 (255)
T ss_dssp -----TTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTT-------------TSHHHHHHHHHTST
T ss_pred -----CCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhc-------------ccHHHHHhhhccCC
Confidence 23678999999999999999887 5899999999999887532110 00111222221111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCc
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKG 338 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~ 338 (413)
...+.+++|+|+++++++... ....++++++.+|..
T Consensus 218 ----------------~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG~~ 254 (255)
T 3icc_A 218 ----------------FNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGGSC 254 (255)
T ss_dssp ----------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSTT
T ss_pred ----------------cCCCCCHHHHHHHHHHHhCcccCCccCCEEEecCCee
Confidence 235678999999999988643 333568999987753
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=205.65 Aligned_cols=220 Identities=14% Similarity=0.127 Sum_probs=153.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+|+||++++++|+++|++|++++|+... ..+...++... .++.++.+|++|+++++++++. .+
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~---~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 97 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREER---LQALAGELSAK-TRVLPLTLDVRDRAAMSAAVDNLPEEFAT 97 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHHTTT-SCEEEEECCTTCHHHHHHHHHTCCGGGSS
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHhhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 789999999999999999999999999999875432 22333333222 4788999999999999998865 46
Q ss_pred CcEEEEcCcccCc-cC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCC-EEEEeccceecCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYV-GE----STLDPLKYYHNITSN----TLVVLESMARHGVD-TLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 146 ~dvvi~~Ag~~~~-~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~-~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
+|+||||||+... .. ..++.+..+++|+.+ ++.+++.|++.+.+ +||++||...+.. ..
T Consensus 98 iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~-----------~~ 166 (272)
T 2nwq_A 98 LRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWP-----------YP 166 (272)
T ss_dssp CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSC-----------CT
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccC-----------CC
Confidence 8999999997642 22 223445578899999 45566666677777 9999999876632 22
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
+...|+.||++.+.+++.++.+ .|+++++|+||.|.++.... .+... ..... . . .
T Consensus 167 ~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~--------------~~~~~-~~~~~---~-~--~- 224 (272)
T 2nwq_A 167 GSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLV--------------RFGGD-QARYD---K-T--Y- 224 (272)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC-----------------------------------------
T ss_pred CCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhc--------------ccccc-hHHHH---H-h--h-
Confidence 3678999999999999999887 58999999999998864210 00000 00000 0 0 0
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCC
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTG 336 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~ 336 (413)
. ...++..+|+|+++++++.......++.+.+.++
T Consensus 225 ------~---~~~~~~pedvA~~v~~l~s~~~~~~g~~i~v~~~ 259 (272)
T 2nwq_A 225 ------A---GAHPIQPEDIAETIFWIMNQPAHLNINSLEIMPV 259 (272)
T ss_dssp ----------CCCCBCHHHHHHHHHHHHTSCTTEEEEEEEEEET
T ss_pred ------c---cCCCCCHHHHHHHHHHHhCCCccCccceEEEeec
Confidence 0 0124789999999999998654444456666443
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-25 Score=209.49 Aligned_cols=227 Identities=14% Similarity=0.075 Sum_probs=162.5
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEe-cCCCCCchhhhhhhhhcCCCCceEEEEccCCCHH----------
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVD-NLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAK---------- 135 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---------- 135 (413)
+.+ |+||||||+|+||++++++|+++|++|++++ |+....+++.+.+... .+.++.++.+|++|.+
T Consensus 44 l~~-k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~~ 120 (328)
T 2qhx_A 44 PTV-PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNAR--RPNSAITVQADLSNVATAPVSGADGS 120 (328)
T ss_dssp -CC-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH--STTCEEEEECCCSSSCBCC-------
T ss_pred cCC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhh--cCCeEEEEEeeCCCchhccccccccc
Confidence 445 8999999999999999999999999999998 7543333333333211 1357899999999999
Q ss_pred -------HHHHHhhc-----CCCcEEEEcCcccCccCC------------------cCChHHHHHHHHHHHHHHHHH---
Q 015080 136 -------AVNKFFSE-----NAFDAVMHFAAVAYVGES------------------TLDPLKYYHNITSNTLVVLES--- 182 (413)
Q Consensus 136 -------~~~~~~~~-----~~~dvvi~~Ag~~~~~~~------------------~~~~~~~~~~n~~~~~~ll~~--- 182 (413)
++++++++ .++|+||||||+...... .++.+..+++|+.++.+++++
T Consensus 121 ~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~ 200 (328)
T 2qhx_A 121 APVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAH 200 (328)
T ss_dssp CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888764 489999999998654322 222345688999996665555
Q ss_pred -HHHcC------CCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceec
Q 015080 183 -MARHG------VDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIG 252 (413)
Q Consensus 183 -~~~~~------~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G 252 (413)
+++.+ .++||++||...+.. ..+...|+.||++.+.+++.++.+ .|+++++|+||.|.+
T Consensus 201 ~m~~~~~~~~~~~g~IV~isS~~~~~~-----------~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T 269 (328)
T 2qhx_A 201 RVAGTPAKHRGTNYSIINMVDAMTNQP-----------LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVL 269 (328)
T ss_dssp HHHHSCGGGSCSCEEEEEECCTTTTSC-----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSC
T ss_pred HHHhcCCcCCCCCcEEEEECchhhccC-----------CCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccC
Confidence 44555 689999999876532 233678999999999999999887 589999999999998
Q ss_pred CCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEE
Q 015080 253 SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIY 331 (413)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~y 331 (413)
+. . .+ +..........+ -+ ..+..++|+|+++++++... ....++++
T Consensus 270 ~~-~---------------~~-~~~~~~~~~~~p------------~~---~r~~~pedvA~~v~~l~s~~~~~itG~~i 317 (328)
T 2qhx_A 270 VD-D---------------MP-PAVWEGHRSKVP------------LY---QRDSSAAEVSDVVIFLCSSKAKYITGTCV 317 (328)
T ss_dssp CC-C---------------SC-HHHHHHHHTTCT------------TT---TSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred Cc-c---------------cc-HHHHHHHHhhCC------------CC---CCCCCHHHHHHHHHHHhCccccCccCcEE
Confidence 75 1 11 122222222111 01 03678999999999998743 22345799
Q ss_pred EecCCCcc
Q 015080 332 NVGTGKGR 339 (413)
Q Consensus 332 ni~~~~~~ 339 (413)
++.+|..+
T Consensus 318 ~vdGG~~~ 325 (328)
T 2qhx_A 318 KVDGGYSL 325 (328)
T ss_dssp EESTTGGG
T ss_pred EECCCccc
Confidence 99877543
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=206.49 Aligned_cols=226 Identities=15% Similarity=0.111 Sum_probs=160.0
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC-CCCchhhhhhhhhcCCCCceEEEEccCCC----HHHHHHH
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS-RGNIGAVKVLQELFPEPGRLQFIYADLGD----AKAVNKF 140 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d----~~~~~~~ 140 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+. ...+++.+.+... .+.++.++.+|++| +++++++
T Consensus 20 ~l~~-k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~~Dv~~~~~~~~~v~~~ 96 (288)
T 2x9g_A 20 HMEA-PAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKE--RSNTAVVCQADLTNSNVLPASCEEI 96 (288)
T ss_dssp --CC-CEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHH--STTCEEEEECCCSCSTTHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhh--cCCceEEEEeecCCccCCHHHHHHH
Confidence 3556 8999999999999999999999999999998764 3333333333211 23578999999999 9988888
Q ss_pred hhc-----CCCcEEEEcCcccCccCC-----cC---------ChHHHHHHHHHHHHHHHHHHHH----cC------CCEE
Q 015080 141 FSE-----NAFDAVMHFAAVAYVGES-----TL---------DPLKYYHNITSNTLVVLESMAR----HG------VDTL 191 (413)
Q Consensus 141 ~~~-----~~~dvvi~~Ag~~~~~~~-----~~---------~~~~~~~~n~~~~~~ll~~~~~----~~------~~~i 191 (413)
+++ .++|+||||||+...... .+ +.+..+++|+.++..+++++.. .+ .++|
T Consensus 97 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~i 176 (288)
T 2x9g_A 97 INSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSI 176 (288)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEE
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEE
Confidence 764 589999999998654322 11 2344688999997777666543 33 5799
Q ss_pred EEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccc
Q 015080 192 IYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELR 268 (413)
Q Consensus 192 V~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~ 268 (413)
|++||...+.. ..+...|+.||++.+.+++.++.+ .|+++++|+||.|.++. . .
T Consensus 177 v~isS~~~~~~-----------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-~---------- 233 (288)
T 2x9g_A 177 VNLCDAMVDQP-----------CMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-M---------- 233 (288)
T ss_dssp EEECCTTTTSC-----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-S----------
T ss_pred EEEecccccCC-----------CCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-c----------
Confidence 99999876542 233678999999999999999887 58999999999999875 2 0
Q ss_pred cccchHHHHHHHHhccccceeEecccccCCCCceeeec-ccHHHHHHHHHHHHHhc-CCCCccEEEecCCCc
Q 015080 269 EHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY-IDVNDLVDAHVKALERA-QPKKVGIYNVGTGKG 338 (413)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~-i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~ 338 (413)
. +..........+ ...+ ...+|+|+++++++... ....++++++.+|..
T Consensus 234 ---~--~~~~~~~~~~~p----------------~~r~~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~~ 284 (288)
T 2x9g_A 234 ---G--EEEKDKWRRKVP----------------LGRREASAEQIADAVIFLVSGSAQYITGSIIKVDGGLS 284 (288)
T ss_dssp ---C--HHHHHHHHHTCT----------------TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ---C--hHHHHHHHhhCC----------------CCCCCCCHHHHHHHHHHHhCccccCccCCEEEECcchh
Confidence 0 111111111111 0124 68999999999998753 223457899977754
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.8e-25 Score=197.58 Aligned_cols=216 Identities=14% Similarity=0.086 Sum_probs=156.2
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
||++|||||+|+||++++++|+++|++|++++|+..+.++..+.+.+.. +.++.++.+|++|++++++++++ .
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQ--GVEVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--CCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc--CCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 4899999999999999999999999999999876544444444443221 35799999999999999988865 4
Q ss_pred CCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHH---cCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMAR---HGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~---~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
++|+||||||+..... ..++.+..+++|+.++.++++++.. .+.+++|++||...+... ...
T Consensus 80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~-----------~~~ 148 (235)
T 3l77_A 80 DVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARLI-----------PYG 148 (235)
T ss_dssp SCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSCC-----------TTC
T ss_pred CCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcccC-----------CCc
Confidence 8999999999865543 2334556788999997776666543 234678888876554322 225
Q ss_pred ChhHHHHHHHHHHHHHHHhh-CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN-SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYS 296 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~-~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 296 (413)
..|+.||++.+.+++.+..+ .|+++++++||.|..+..... .
T Consensus 149 ~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~---------------------------~---------- 191 (235)
T 3l77_A 149 GGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSK---------------------------P---------- 191 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCC---------------------------S----------
T ss_pred chHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCcccccccccc---------------------------C----------
Confidence 68999999999999998655 699999999999987542100 0
Q ss_pred CCCCceeeecccHHHHHHHHHHHHHhcCCC-CccEEEecCCC
Q 015080 297 TADGTCVRDYIDVNDLVDAHVKALERAQPK-KVGIYNVGTGK 337 (413)
Q Consensus 297 ~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~-~~~~yni~~~~ 337 (413)
.......++.++|+|+++++++..+... .+++....+++
T Consensus 192 --~~~~~~~~~~p~dva~~v~~l~~~~~~~~~~~~~~~~~~~ 231 (235)
T 3l77_A 192 --GKPKEKGYLKPDEIAEAVRCLLKLPKDVRVEELMLRSVYQ 231 (235)
T ss_dssp --CCCGGGTCBCHHHHHHHHHHHHTSCTTCCCCEEEECCTTS
T ss_pred --CcccccCCCCHHHHHHHHHHHHcCCCCCccceEEEeeccc
Confidence 0001125688999999999999976543 23455444443
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=207.39 Aligned_cols=176 Identities=17% Similarity=0.127 Sum_probs=137.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+||||++++++|+++|++|++++|+....+++.+.+.... .+..+.++.+|++|++++++++++
T Consensus 30 l~~-k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 107 (279)
T 1xg5_A 30 WRD-RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG-YPGTLIPYRCDLSNEEDILSMFSAIRS 107 (279)
T ss_dssp GTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcC-CCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 445 899999999999999999999999999999875443333333333321 124688899999999999888764
Q ss_pred --CCCcEEEEcCcccCccCC----cCChHHHHHHHHHH----HHHHHHHHHHcCC--CEEEEeccceecCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSN----TLVVLESMARHGV--DTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~----~~~ll~~~~~~~~--~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+...... .++.+..+++|+.+ ++.+++.+++.+. ++||++||..++..
T Consensus 108 ~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~--------- 178 (279)
T 1xg5_A 108 QHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV--------- 178 (279)
T ss_dssp HHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC---------
T ss_pred hCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhccc---------
Confidence 479999999997654332 23345678899999 8888899988775 89999999887632
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh-----CCCcEEEEeecceecC
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN-----SDMAVMILRYFNVIGS 253 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~lrp~~v~G~ 253 (413)
.+..+...|+.||++.+.+++.++.+ .|+++++|+||.|.++
T Consensus 179 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~ 225 (279)
T 1xg5_A 179 LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQ 225 (279)
T ss_dssp CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSS
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccch
Confidence 12234568999999999999888765 5799999999999875
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=206.95 Aligned_cols=203 Identities=13% Similarity=0.103 Sum_probs=152.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |+||||||+||||++++++|+++|++|++++|+....+++.+.+++. +.++.++.+|++|.+++++++++
T Consensus 29 l~~-k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~~ 104 (272)
T 1yb1_A 29 VTG-EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL---GAKVHTFVVDCSNREDIYSSAKKVKA 104 (272)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCC-CEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhc---CCeEEEEEeeCCCHHHHHHHHHHHHH
Confidence 456 89999999999999999999999999999987544333333333332 35789999999999999888764
Q ss_pred --CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+...... .++.+..+++|+.++.+ +++.+++.+.++||++||..++...
T Consensus 105 ~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------- 174 (272)
T 1yb1_A 105 EIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSV---------- 174 (272)
T ss_dssp HTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCH----------
T ss_pred HCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCC----------
Confidence 479999999998654332 22344678899999544 5555666778899999998776422
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhC------CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKNS------DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~~------gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
.+...|+.||++.+.+++.++.+. |+++++|+||.|.++... . ...
T Consensus 175 -~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~---------------~-----------~~~- 226 (272)
T 1yb1_A 175 -PFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIK---------------N-----------PST- 226 (272)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTT---------------C-----------THH-
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc---------------c-----------ccc-
Confidence 225689999999999999988763 899999999999886411 0 000
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP 325 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 325 (413)
....+++++|+|++++.++..+..
T Consensus 227 --------------~~~~~~~~~dva~~i~~~~~~~~~ 250 (272)
T 1yb1_A 227 --------------SLGPTLEPEEVVNRLMHGILTEQK 250 (272)
T ss_dssp --------------HHCCCCCHHHHHHHHHHHHHTTCS
T ss_pred --------------cccCCCCHHHHHHHHHHHHHcCCC
Confidence 012468999999999999986543
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9.6e-25 Score=201.52 Aligned_cols=230 Identities=13% Similarity=0.030 Sum_probs=166.9
Q ss_pred CCCCceEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEecCCCCC-chhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhh
Q 015080 66 HEEGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGN-IGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFS 142 (413)
Q Consensus 66 ~~~~~k~vlITGas--G~IG~~la~~L~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 142 (413)
.+.+ |++|||||+ |+||.+++++|+++|++|++++|..... ++..+.+.+.. +.++.++.+|++|.++++++++
T Consensus 17 ~l~~-k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~v~~~~~ 93 (267)
T 3gdg_A 17 SLKG-KVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTY--GIKAKAYKCQVDSYESCEKLVK 93 (267)
T ss_dssp CCTT-CEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHH--CCCEECCBCCTTCHHHHHHHHH
T ss_pred CcCC-CEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhc--CCceeEEecCCCCHHHHHHHHH
Confidence 3556 999999999 9999999999999999999988755443 33333333222 3578999999999999998886
Q ss_pred c-----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCC
Q 015080 143 E-----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 143 ~-----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
+ .++|+||||||+..... ..++.+..+++|+.++.++++++ ++.+.++||++||...+...
T Consensus 94 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 167 (267)
T 3gdg_A 94 DVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIAN------ 167 (267)
T ss_dssp HHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC------
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccC------
Confidence 5 48999999999875443 22334557889999966655554 66677899999997765321
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhCC--CcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKNSD--MAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g--i~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
+..+...|+.||++.+.+++.++.+.+ ++++++.||.|..+... .+.+..........
T Consensus 168 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~-- 227 (267)
T 3gdg_A 168 ---FPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSD---------------FVPKETQQLWHSMI-- 227 (267)
T ss_dssp ---SSSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGG---------------GSCHHHHHHHHTTS--
T ss_pred ---CCCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhh---------------hCCHHHHHHHHhcC--
Confidence 112367899999999999999998843 89999999999876421 11222222222222
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
....+.+++|+|+++++++.... ...++++++.+|..
T Consensus 228 --------------~~~r~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG~~ 265 (267)
T 3gdg_A 228 --------------PMGRDGLAKELKGAYVYFASDASTYTTGADLLIDGGYT 265 (267)
T ss_dssp --------------TTSSCEETHHHHHHHHHHHSTTCTTCCSCEEEESTTGG
T ss_pred --------------CCCCCcCHHHHHhHhheeecCccccccCCEEEECCcee
Confidence 22356789999999999887532 23468999987754
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-26 Score=208.35 Aligned_cols=223 Identities=9% Similarity=0.008 Sum_probs=152.5
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--CCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--NAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~~~d 147 (413)
||+||||||+||||++++++|+++|++|++++|+..+.+ . . +.+|++|.+++++++++ .++|
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-------------~--~-~~~Dl~~~~~v~~~~~~~~~~id 64 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVI-------------A--D-LSTAEGRKQAIADVLAKCSKGMD 64 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEE-------------C--C-TTSHHHHHHHHHHHHTTCTTCCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhc-------------c--c-cccCCCCHHHHHHHHHHhCCCCC
Confidence 689999999999999999999999999999998654322 0 1 56999999999999875 3689
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccceecCCCCCCCCCCC------------
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMA----RHGVDTLIYSSTCATYGEPEKMPITEE------------ 211 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~iV~~SS~~~~~~~~~~~~~e~------------ 211 (413)
+||||||+... ....+..+++|+.++.++++++. +.+.++||++||.+.+......+..+.
T Consensus 65 ~lv~~Ag~~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (257)
T 1fjh_A 65 GLVLCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARA 141 (257)
T ss_dssp EEEECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHH
T ss_pred EEEECCCCCCC---cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhh
Confidence 99999997642 23478899999999777666654 556689999999888732111000000
Q ss_pred -----CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhc
Q 015080 212 -----TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARG 283 (413)
Q Consensus 212 -----~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (413)
.+..+...|+.||++.+.+++.++.+ .|+++++|+||.|.++..... +..........
T Consensus 142 ~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--------------~~~~~~~~~~~ 207 (257)
T 1fjh_A 142 IVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAG--------------LQDPRYGESIA 207 (257)
T ss_dssp HHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC----------------------------------
T ss_pred hhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhh--------------ccchhHHHHHH
Confidence 12234668999999999999999877 699999999999998742110 00000000000
Q ss_pred cccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 284 IIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 284 ~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
. + ......+++++|+|++++.++.... ...++.|++.+|...
T Consensus 208 ~---~-----------~~~~~~~~~~~dvA~~~~~l~~~~~~~~tG~~~~vdgG~~~ 250 (257)
T 1fjh_A 208 K---F-----------VPPMGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGGIDA 250 (257)
T ss_dssp ----C-----------CCSTTSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTTHHH
T ss_pred h---c-----------ccccCCCCCHHHHHHHHHHHhCchhcCCcCCEEEECCCccc
Confidence 0 0 0011247899999999999987542 224579999877543
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.8e-25 Score=199.93 Aligned_cols=207 Identities=11% Similarity=0.099 Sum_probs=158.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
.++ |+||||||+|+||++++++|+++|++|++++|+..... ...+.+|++|.+++++++++
T Consensus 20 ~m~-k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~---------------~~~~~~d~~d~~~v~~~~~~~~~ 83 (251)
T 3orf_A 20 HMS-KNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA---------------DHSFTIKDSGEEEIKSVIEKINS 83 (251)
T ss_dssp --C-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS---------------SEEEECSCSSHHHHHHHHHHHHT
T ss_pred ccC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc---------------ccceEEEeCCHHHHHHHHHHHHH
Confidence 345 89999999999999999999999999999998654322 23578999999999988865
Q ss_pred --CCCcEEEEcCcccCccC-----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE-----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++... ..++||++||...+.. .
T Consensus 84 ~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~-----------~ 152 (251)
T 3orf_A 84 KSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNR-----------T 152 (251)
T ss_dssp TTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC-----------C
T ss_pred HcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccC-----------C
Confidence 47999999999764322 22334567889999999999888764 2359999999877632 2
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh-----CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 215 APINPYGKAKKMAEDIILDFSKN-----SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.|.++. .....
T Consensus 153 ~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~-----------------------~~~~~------- 202 (251)
T 3orf_A 153 SGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPT-----------------------NRKYM------- 202 (251)
T ss_dssp TTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHH-----------------------HHHHC-------
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcc-----------------------hhhhc-------
Confidence 33678999999999999999988 57999999999987642 11111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHh-c-CCCCccEEEecCCCcc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALER-A-QPKKVGIYNVGTGKGR 339 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~-~-~~~~~~~yni~~~~~~ 339 (413)
.......+++++|+|++++.++.. . ....++++++.+++..
T Consensus 203 ---------~~~~~~~~~~~~dva~~i~~l~~~~~~~~~tG~~i~v~~g~~~ 245 (251)
T 3orf_A 203 ---------SDANFDDWTPLSEVAEKLFEWSTNSDSRPTNGSLVKFETKSKV 245 (251)
T ss_dssp ---------TTSCGGGSBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEETTE
T ss_pred ---------ccccccccCCHHHHHHHHHHHhcCccccCCcceEEEEecCCcc
Confidence 112234678999999999999986 2 2234679999777654
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=200.12 Aligned_cols=200 Identities=15% Similarity=0.144 Sum_probs=145.3
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--CCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--NAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~~~d 147 (413)
||+||||||+|+||++++++|+++|++|++++|+.. ...+...++ +.++.++.+|++|.+++++++++ ...|
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~---~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~d 74 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSES---KLSTVTNCL---SNNVGYRARDLASHQEVEQLFEQLDSIPS 74 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHH---HHHHHHHTC---SSCCCEEECCTTCHHHHHHHHHSCSSCCS
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHHHH---hhccCeEeecCCCHHHHHHHHHHHhhcCC
Confidence 689999999999999999999999999999987543 223333332 35788999999999999999876 3359
Q ss_pred EEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHHc---CCCEEEEeccceecCCCCCCCCCCCCCCCCCChh
Q 015080 148 AVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMARH---GVDTLIYSSTCATYGEPEKMPITEETPQAPINPY 220 (413)
Q Consensus 148 vvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y 220 (413)
+||||||+...... .++.+..+++|+.++.++++++... ..++||++||...+.. ..+...|
T Consensus 75 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~-----------~~~~~~Y 143 (230)
T 3guy_A 75 TVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQP-----------KAQESTY 143 (230)
T ss_dssp EEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSC-----------CTTCHHH
T ss_pred EEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCC-----------CCCCchh
Confidence 99999998654332 2334557889999988877766543 2239999999877643 2336789
Q ss_pred HHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccC
Q 015080 221 GKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST 297 (413)
Q Consensus 221 ~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 297 (413)
+.||++.+.+++.++.+ .|+++++++||.|..+... ...
T Consensus 144 ~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~-----------------------~~~--------------- 185 (230)
T 3guy_A 144 CAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWE-----------------------TSG--------------- 185 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHH-----------------------hcC---------------
Confidence 99999999999999988 4899999999998875311 000
Q ss_pred CCCceeeecccHHHHHHHHHHHHHhcCC
Q 015080 298 ADGTCVRDYIDVNDLVDAHVKALERAQP 325 (413)
Q Consensus 298 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 325 (413)
.......+++++|+|++++.++..+..
T Consensus 186 -~~~~~~~~~~~~dvA~~i~~l~~~~~~ 212 (230)
T 3guy_A 186 -KSLDTSSFMSAEDAALMIHGALANIGN 212 (230)
T ss_dssp --------CCCHHHHHHHHHHHCCEETT
T ss_pred -CCCCcccCCCHHHHHHHHHHHHhCcCC
Confidence 001123578999999999999886544
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-25 Score=201.25 Aligned_cols=212 Identities=13% Similarity=0.110 Sum_probs=149.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----- 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 143 (413)
|+||||||+|+||++++++|+++| ++|++++|+....+. +.++ .+.++.++.+|++|.+++++++++
T Consensus 4 k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~----l~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (250)
T 1yo6_A 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE----LKSI--KDSRVHVLPLTVTCDKSLDTFVSKVGEIV 77 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHH----HHTC--CCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHH----HHhc--cCCceEEEEeecCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999999 999999986543332 2222 235799999999999999888864
Q ss_pred C--CCcEEEEcCcccC-ccC----CcCChHHHHHHHHHHHHHHHHHHH----Hc------C-----CCEEEEeccceecC
Q 015080 144 N--AFDAVMHFAAVAY-VGE----STLDPLKYYHNITSNTLVVLESMA----RH------G-----VDTLIYSSTCATYG 201 (413)
Q Consensus 144 ~--~~dvvi~~Ag~~~-~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~------~-----~~~iV~~SS~~~~~ 201 (413)
. ++|+||||||+.. ... ..++.+..+++|+.++.++++++. +. + .++||++||...+.
T Consensus 78 g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 157 (250)
T 1yo6_A 78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSI 157 (250)
T ss_dssp GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCS
T ss_pred CCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcccc
Confidence 2 8999999999865 222 223345678899999777665554 33 4 68999999987654
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhC---CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHH
Q 015080 202 EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNS---DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACF 278 (413)
Q Consensus 202 ~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (413)
.... +..+..+...|+.||++.+.+++.++.+. |+++++++||.|.++...
T Consensus 158 ~~~~----~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------------- 211 (250)
T 1yo6_A 158 TDNT----SGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGG---------------------- 211 (250)
T ss_dssp TTCC----STTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC----------------------------
T ss_pred CCcc----cccccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCC----------------------
Confidence 3211 11223456789999999999999998884 899999999998875310
Q ss_pred HHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCC-CccEEEecCCCcc
Q 015080 279 DAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK-KVGIYNVGTGKGR 339 (413)
Q Consensus 279 ~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~-~~~~yni~~~~~~ 339 (413)
. ..+++.+|+|++++.++...... .+..+.+ ++..+
T Consensus 212 --------------------~----~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~-~g~~~ 248 (250)
T 1yo6_A 212 --------------------K----NAALTVEQSTAELISSFNKLDNSHNGRFFMR-NLKPY 248 (250)
T ss_dssp -------------------------------HHHHHHHHHHHTTCCGGGTTCEEET-TEEEC
T ss_pred --------------------C----CCCCCHHHHHHHHHHHHhcccccCCCeEEEE-CCcCC
Confidence 0 12478899999999999865422 2345544 44433
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-25 Score=203.78 Aligned_cols=176 Identities=15% Similarity=0.123 Sum_probs=133.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchh----hhhhhhhcCCCCceEEEEccCCCHHHHHHHh
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGA----VKVLQELFPEPGRLQFIYADLGDAKAVNKFF 141 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 141 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+..+.++. .+...++...+.++.++.+|++|++++++++
T Consensus 3 ~l~~-k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 81 (274)
T 3e03_A 3 TLSG-KTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAV 81 (274)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHH
T ss_pred CCCC-cEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHH
Confidence 4556 9999999999999999999999999999999876553322 1222222222467899999999999999887
Q ss_pred hc-----CCCcEEEEcCcccCccCCc----CChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCC
Q 015080 142 SE-----NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 142 ~~-----~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~ 208 (413)
++ .++|+||||||+....... ++.+..+++|+.++.+++++ |++.+.++||++||...+...
T Consensus 82 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~----- 156 (274)
T 3e03_A 82 AATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPA----- 156 (274)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHH-----
T ss_pred HHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCC-----
Confidence 65 5899999999986543322 23455788999996665555 455667899999997765320
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeeccee
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVI 251 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~ 251 (413)
+..+...|+.||++.+.+++.++.+ .|+++++|+||.+.
T Consensus 157 ----~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v 198 (274)
T 3e03_A 157 ----WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVI 198 (274)
T ss_dssp ----HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCB
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCccc
Confidence 0122567999999999999999888 58999999999544
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-25 Score=205.48 Aligned_cols=232 Identities=12% Similarity=0.094 Sum_probs=159.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |++|||||+|+||.+++++|+++|++|++++|+.. ...+...+. +.++.++.+|++|.+++++++++
T Consensus 3 l~g-k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~---~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (281)
T 3zv4_A 3 LTG-EVALITGGASGLGRALVDRFVAEGARVAVLDKSAE---RLRELEVAH---GGNAVGVVGDVRSLQDQKRAAERCLA 75 (281)
T ss_dssp TTT-CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHHT---BTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCC-CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHH---HHHHHHHHc---CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 456 99999999999999999999999999999987532 222222222 35789999999999999888765
Q ss_pred --CCCcEEEEcCcccCccCC-----cC----ChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES-----TL----DPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~-----~~----~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~ 208 (413)
.++|+||||||+...... .+ ..+..+++|+.++.++++++ ++.+ ++||++||...+..
T Consensus 76 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~------ 148 (281)
T 3zv4_A 76 AFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR-GSVVFTISNAGFYP------ 148 (281)
T ss_dssp HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTSS------
T ss_pred hcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CeEEEEecchhccC------
Confidence 589999999998543211 11 24557889999966655554 4444 79999999876532
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEeecceecCCCCCCCCCCCCcccccccchH-HHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKNS--DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRIS-GACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 285 (413)
..+...|+.||++.+.+++.++.+. .+++++|+||.|..+........... . ... ...........
T Consensus 149 -----~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~ 217 (281)
T 3zv4_A 149 -----NGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSE-Q-----SISSVPLADMLKSVL 217 (281)
T ss_dssp -----SSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------------CCHHHHHHHTC
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCccccccccccc-c-----cccchhHHHHHHhcC
Confidence 2236789999999999999999883 39999999999988742211000000 0 000 00111222211
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHH-hcCC-CCccEEEecCCCcc
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALE-RAQP-KKVGIYNVGTGKGR 339 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~-~~~~-~~~~~yni~~~~~~ 339 (413)
+ ...+...+|+|+++++++. .... ..++++++.+|...
T Consensus 218 p----------------~~r~~~pedvA~~v~fL~s~~~~~~itG~~i~vdGG~~~ 257 (281)
T 3zv4_A 218 P----------------IGRMPALEEYTGAYVFFATRGDSLPATGALLNYDGGMGV 257 (281)
T ss_dssp T----------------TSSCCCGGGGSHHHHHHHSTTTSTTCSSCEEEESSSGGG
T ss_pred C----------------CCCCCCHHHHHHHHHHhhcccccccccCcEEEECCCCcc
Confidence 1 2346788999999999987 3322 35689999877543
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=197.40 Aligned_cols=204 Identities=14% Similarity=0.136 Sum_probs=152.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-------
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE------- 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~------- 143 (413)
|+||||||+|+||++++++|+++|++|++++|+..... ....++.+|++|++++++++++
T Consensus 4 k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 70 (236)
T 1ooe_A 4 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-------------DSNILVDGNKNWTEQEQSILEQTASSLQG 70 (236)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-------------SEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc-------------cccEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999999998654322 2456788999999999888764
Q ss_pred CCCcEEEEcCcccCccCC-----cCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 144 NAFDAVMHFAAVAYVGES-----TLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~~~~-----~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
.++|+||||||+...... .++.+..+++|+.++.++++++... ..++||++||...+.. ..+
T Consensus 71 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~-----------~~~ 139 (236)
T 1ooe_A 71 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGP-----------TPS 139 (236)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC-----------CTT
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccC-----------CCC
Confidence 389999999997653322 2234557889999988888887764 2369999999877632 233
Q ss_pred CChhHHHHHHHHHHHHHHHhhC-----CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 217 INPYGKAKKMAEDIILDFSKNS-----DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~~-----gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
...|+.||++.+.+++.++.+. |+++++++||.+.++. .. ......
T Consensus 140 ~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~-------------------~~----~~~~~~------ 190 (236)
T 1ooe_A 140 MIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM-------------------NR----KWMPNA------ 190 (236)
T ss_dssp BHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH-------------------HH----HHSTTC------
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc-------------------hh----hcCCCc------
Confidence 6789999999999999998875 4999999999998742 11 111100
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhc--CCCCccEEEecCCC
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERA--QPKKVGIYNVGTGK 337 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~--~~~~~~~yni~~~~ 337 (413)
....++..+|+|++++.++..+ ....++.+++.++.
T Consensus 191 ----------~~~~~~~~~dvA~~i~~~l~s~~~~~~~G~~~~v~gg~ 228 (236)
T 1ooe_A 191 ----------DHSSWTPLSFISEHLLKWTTETSSRPSSGALLKITTEN 228 (236)
T ss_dssp ----------CGGGCBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEET
T ss_pred ----------cccccCCHHHHHHHHHHHHcCCCcccccccEEEEecCC
Confidence 1124577899999998766432 22245788886654
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-24 Score=201.27 Aligned_cols=227 Identities=14% Similarity=0.084 Sum_probs=161.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEe-cCCCCCchhhhhhhhhcCCCCceEEEEccCCCHH----------
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVD-NLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAK---------- 135 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---------- 135 (413)
+.+ |++|||||+|+||++++++|+++|++|++++ |+....+++.+.+.+ ..+.++.++.+|++|.+
T Consensus 7 l~~-k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (291)
T 1e7w_A 7 PTV-PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNA--RRPNSAITVQADLSNVATAPVSGADGS 83 (291)
T ss_dssp -CC-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--HSTTCEEEEECCCSSSCBCCCC----C
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhh--hcCCeeEEEEeecCCcccccccccccc
Confidence 345 8999999999999999999999999999998 754333333333321 12357899999999999
Q ss_pred -------HHHHHhhc-----CCCcEEEEcCcccCccCC------------------cCChHHHHHHHHHHHHHHHHHH--
Q 015080 136 -------AVNKFFSE-----NAFDAVMHFAAVAYVGES------------------TLDPLKYYHNITSNTLVVLESM-- 183 (413)
Q Consensus 136 -------~~~~~~~~-----~~~dvvi~~Ag~~~~~~~------------------~~~~~~~~~~n~~~~~~ll~~~-- 183 (413)
++.+++++ .++|+||||||+...... .++.+..+++|+.++.++++++
T Consensus 84 ~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 163 (291)
T 1e7w_A 84 APVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAH 163 (291)
T ss_dssp CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88888765 489999999998654322 2223457889999966655554
Q ss_pred --HHcC------CCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceec
Q 015080 184 --ARHG------VDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIG 252 (413)
Q Consensus 184 --~~~~------~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G 252 (413)
++.+ .++||++||...+.. ..+...|+.||++.+.+++.++.+ .|+++++|+||.|..
T Consensus 164 ~m~~~~~~~~~~~g~Iv~isS~~~~~~-----------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T 232 (291)
T 1e7w_A 164 RVAGTPAKHRGTNYSIINMVDAMTNQP-----------LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVL 232 (291)
T ss_dssp HHHTSCGGGSCSCEEEEEECCTTTTSC-----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCC
T ss_pred HHHhcCCCCCCCCcEEEEEechhhcCC-----------CCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCccC
Confidence 4555 589999999876542 233678999999999999999887 589999999999876
Q ss_pred CCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEE
Q 015080 253 SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIY 331 (413)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~y 331 (413)
+. . . . +..........+ -+ ..+...+|+|+++++++.... ...++++
T Consensus 233 ~~-~--~------------~--~~~~~~~~~~~p------------~~---~r~~~pedvA~~v~~l~s~~~~~itG~~i 280 (291)
T 1e7w_A 233 VD-D--M------------P--PAVWEGHRSKVP------------LY---QRDSSAAEVSDVVIFLCSSKAKYITGTCV 280 (291)
T ss_dssp GG-G--S------------C--HHHHHHHHTTCT------------TT---TSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred Cc-c--C------------C--HHHHHHHHhhCC------------CC---CCCCCHHHHHHHHHHHhCCcccCccCcEE
Confidence 53 1 0 0 111222222111 11 035789999999999987432 2345789
Q ss_pred EecCCCcc
Q 015080 332 NVGTGKGR 339 (413)
Q Consensus 332 ni~~~~~~ 339 (413)
++.+|..+
T Consensus 281 ~vdGG~~~ 288 (291)
T 1e7w_A 281 KVDGGYSL 288 (291)
T ss_dssp EESTTGGG
T ss_pred EECCCccc
Confidence 99777543
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=204.02 Aligned_cols=209 Identities=17% Similarity=0.140 Sum_probs=133.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHH---HHhhc
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVN---KFFSE 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~---~~~~~ 143 (413)
+++ |++|||||+||||++++++|++ |++|++++|+... . +.+.+. .++.++.+|+++.++.. +.+++
T Consensus 3 l~~-k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~---~-~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (245)
T 3e9n_A 3 LKK-KIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEH---L-AALAEI----EGVEPIESDIVKEVLEEGGVDKLKN 72 (245)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHH---H-HHHHTS----TTEEEEECCHHHHHHTSSSCGGGTT
T ss_pred CCC-CEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHH---H-HHHHhh----cCCcceecccchHHHHHHHHHHHHh
Confidence 445 8999999999999999999988 9999999864322 2 222221 46899999999886522 22222
Q ss_pred -CCCcEEEEcCcccCccCCc----CChHHHHHHHHHHHH----HHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSNTL----VVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~----~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||+....... ++.+..+++|+.++. .+++.+++.+ ++||++||...+...
T Consensus 73 ~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~----------- 140 (245)
T 3e9n_A 73 LDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-GCVIYINSGAGNGPH----------- 140 (245)
T ss_dssp CSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC-------------------
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEcCcccccCC-----------
Confidence 4799999999986544322 234457889999954 4555555555 799999998876532
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
.+...|+.||++.+.+++.++.+ .|+++++++||.|.++.... ......
T Consensus 141 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-------------------~~~~~~--------- 192 (245)
T 3e9n_A 141 PGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQG-------------------LMDSQG--------- 192 (245)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------------------------------------
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhh-------------------hhhhhh---------
Confidence 23678999999999999999887 68999999999999864210 000000
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEec
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVG 334 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~ 334 (413)
.......+++++|+|++++.++..+... .+||+.
T Consensus 193 -------~~~~~~~~~~p~dvA~~i~~l~~~~~~~--~~~~i~ 226 (245)
T 3e9n_A 193 -------TNFRPEIYIEPKEIANAIRFVIDAGETT--QITNVD 226 (245)
T ss_dssp ----------CCGGGSCHHHHHHHHHHHHTSCTTE--EEEEEE
T ss_pred -------cccccccCCCHHHHHHHHHHHHcCCCcc--ceeeeE
Confidence 0111235789999999999999876653 688873
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-24 Score=204.29 Aligned_cols=220 Identities=16% Similarity=0.135 Sum_probs=159.2
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchh----hhhhhhhcCCCCceEEEEccCCCHHHHHHHh
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGA----VKVLQELFPEPGRLQFIYADLGDAKAVNKFF 141 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 141 (413)
.+.+ |+||||||+|+||.+++++|+++|++|++++|+..+.+++ .+...++...+.++.++.+|++|++++++++
T Consensus 42 ~l~g-k~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~ 120 (346)
T 3kvo_A 42 RLAG-CTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAV 120 (346)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCC-CEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence 4567 9999999999999999999999999999999876654331 2222222223467999999999999999888
Q ss_pred hc-----CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCC
Q 015080 142 SE-----NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 142 ~~-----~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~ 208 (413)
++ .++|+||||||+...... .++.+..+++|+.++.++++++ ++.+.++||++||...+...
T Consensus 121 ~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~----- 195 (346)
T 3kvo_A 121 EKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPV----- 195 (346)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGG-----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCC-----
Confidence 65 489999999998654332 2334557889999977766665 55567899999997765321
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN--SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~--~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
+..+...|+.||++.+.+++.++.+ .||++++|.||.++.. .+. +.....
T Consensus 196 ----~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T------------------~~~----~~~~~~-- 247 (346)
T 3kvo_A 196 ----WFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHT------------------AAM----DMLGGP-- 247 (346)
T ss_dssp ----GTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCC------------------HHH----HHHCC---
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcccc------------------HHH----Hhhccc--
Confidence 1233678999999999999999988 4899999999964432 111 111111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEec
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVG 334 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~ 334 (413)
.....+..++|+|+++++++.......++++ +.
T Consensus 248 --------------~~~~r~~~pedvA~~v~~L~s~~~~itG~~i-vd 280 (346)
T 3kvo_A 248 --------------GIESQCRKVDIIADAAYSIFQKPKSFTGNFV-ID 280 (346)
T ss_dssp ---------------CGGGCBCTHHHHHHHHHHHTSCTTCCSCEE-EH
T ss_pred --------------cccccCCCHHHHHHHHHHHHhcCCCCCceEE-EC
Confidence 1123467889999999999987322344454 53
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=198.42 Aligned_cols=174 Identities=13% Similarity=0.089 Sum_probs=134.5
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCC---CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDS---YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
+.+ |+||||||+|+||++++++|+++| ++|++++|+....+.+. .+.+. +.++.++.+|++|.++++++++.
T Consensus 19 ~~~-k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~-~l~~~---~~~~~~~~~Dl~~~~~v~~~~~~ 93 (267)
T 1sny_A 19 SHM-NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE-DLAKN---HSNIHILEIDLRNFDAYDKLVAD 93 (267)
T ss_dssp -CC-SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHH-HHHHH---CTTEEEEECCTTCGGGHHHHHHH
T ss_pred CCC-CEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHH-Hhhcc---CCceEEEEecCCChHHHHHHHHH
Confidence 445 899999999999999999999999 99999998766544332 22222 35799999999999999888864
Q ss_pred -----C--CCcEEEEcCcccC-ccC----CcCChHHHHHHHHHHHHHHHHHHHHc----------C-----CCEEEEecc
Q 015080 144 -----N--AFDAVMHFAAVAY-VGE----STLDPLKYYHNITSNTLVVLESMARH----------G-----VDTLIYSST 196 (413)
Q Consensus 144 -----~--~~dvvi~~Ag~~~-~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----------~-----~~~iV~~SS 196 (413)
. ++|+||||||+.. ... ..++.+..+++|+.++.++++++... + .++||++||
T Consensus 94 ~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS 173 (267)
T 1sny_A 94 IEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSS 173 (267)
T ss_dssp HHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECC
T ss_pred HHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEec
Confidence 2 7999999999865 221 22344567889999987777666432 2 579999999
Q ss_pred ceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 197 CATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 197 ~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
...+.... +..+...|+.||++.+.+++.++.+ .|+++++|+||.|..+
T Consensus 174 ~~~~~~~~--------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~ 225 (267)
T 1sny_A 174 ILGSIQGN--------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTD 225 (267)
T ss_dssp GGGCSTTC--------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCST
T ss_pred ccccccCC--------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecC
Confidence 87764321 1234678999999999999999887 6899999999998765
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=196.33 Aligned_cols=206 Identities=14% Similarity=0.135 Sum_probs=154.3
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
++ |+||||||+|+||++++++|+++|++|++++|+..... ....++.+|++|++++++++++
T Consensus 6 ~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~~D~~~~~~v~~~~~~~~~~ 71 (241)
T 1dhr_A 6 EA-RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-------------SASVIVKMTDSFTEQADQVTAEVGKL 71 (241)
T ss_dssp CC-CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-------------SEEEECCCCSCHHHHHHHHHHHHHHH
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc-------------CCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35 89999999999999999999999999999998654322 2456788999999999888864
Q ss_pred ---CCCcEEEEcCcccCccCC-----cCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES-----TLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~-----~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+...... .++.+..+++|+.++.++++++... ..++||++||...+...
T Consensus 72 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 141 (241)
T 1dhr_A 72 LGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGT---------- 141 (241)
T ss_dssp HTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC----------
T ss_pred hCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCC----------
Confidence 489999999997653322 2234557889999998888888764 23699999998876432
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhC-----CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKNS-----DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~~-----gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
.+...|+.||++.+.+++.++.+. |+++++|+||.+-.+. .. ......
T Consensus 142 -~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~-------------------~~----~~~~~~--- 194 (241)
T 1dhr_A 142 -PGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM-------------------NR----KSMPEA--- 194 (241)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH-------------------HH----HHSTTS---
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCcc-------------------cc----ccCcch---
Confidence 236789999999999999998763 5999999999987641 11 111100
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
....++..+|+|++++.++.... ...++.+.+.++.
T Consensus 195 -------------~~~~~~~~~~vA~~v~~l~~~~~~~~~G~~~~v~g~~ 231 (241)
T 1dhr_A 195 -------------DFSSWTPLEFLVETFHDWITGNKRPNSGSLIQVVTTD 231 (241)
T ss_dssp -------------CGGGSEEHHHHHHHHHHHHTTTTCCCTTCEEEEEEET
T ss_pred -------------hhccCCCHHHHHHHHHHHhcCCCcCccceEEEEeCCC
Confidence 11235678999999999887532 2245788886554
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-24 Score=196.45 Aligned_cols=229 Identities=13% Similarity=0.106 Sum_probs=151.4
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHh-hc-CCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFF-SE-NAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~-~~~d 147 (413)
||++|||||+|+||++++++|+++|++|++++|+....+.+.+ +... +.++.++ |..+.+.+.+.+ ++ .++|
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~---~~~~~~~--d~~~v~~~~~~~~~~~g~iD 74 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAET---YPQLKPM--SEQEPAELIEAVTSAYGQVD 74 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHH---CTTSEEC--CCCSHHHHHHHHHHHHSCCC
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhc---CCcEEEE--CHHHHHHHHHHHHHHhCCCC
Confidence 6899999999999999999999999999999886544433333 3332 2344443 555544332222 22 5899
Q ss_pred EEEEcCccc-CccC----CcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCC
Q 015080 148 AVMHFAAVA-YVGE----STLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEETPQAPIN 218 (413)
Q Consensus 148 vvi~~Ag~~-~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~ 218 (413)
+||||||+. .... ..++.+..+++|+.++.+++++ +++.+.++||++||...+.. ..+..
T Consensus 75 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----------~~~~~ 143 (254)
T 1zmt_A 75 VLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGP-----------WKELS 143 (254)
T ss_dssp EEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSC-----------CTTCH
T ss_pred EEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccC-----------CCCch
Confidence 999999986 3322 2233456788999996665544 45666789999999776532 22367
Q ss_pred hhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccc
Q 015080 219 PYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDY 295 (413)
Q Consensus 219 ~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 295 (413)
.|+.||++.+.+++.++.+ .|+++++|+||.|+||...... ..+... . .+..........+
T Consensus 144 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~----~T~~~~--~-~~~~~~~~~~~~p--------- 207 (254)
T 1zmt_A 144 TYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFY----PTEPWK--T-NPEHVAHVKKVTA--------- 207 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSC----BHHHHT--T-CHHHHHHHHHHSS---------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccC----CCcccc--c-ChHHHHHHhccCC---------
Confidence 8999999999999999887 5899999999999988632110 000000 0 0111111111111
Q ss_pred cCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCc
Q 015080 296 STADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKG 338 (413)
Q Consensus 296 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~ 338 (413)
...+.+.+|+|+++++++..... ..++++++.+|..
T Consensus 208 -------~~~~~~p~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 244 (254)
T 1zmt_A 208 -------LQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFP 244 (254)
T ss_dssp -------SSSCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTTCC
T ss_pred -------CCCCcCHHHHHHHHHHHhCcccCCccCCEEEECCCch
Confidence 12467899999999999875432 2457999977753
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-24 Score=196.76 Aligned_cols=174 Identities=13% Similarity=0.071 Sum_probs=133.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHH---CCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLK---DSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
+.+ |++|||||+|+||++++++|++ +|++|++++|+....+++.+.+.+..+ +.++.++.+|++|+++++++++.
T Consensus 4 l~~-k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~ 81 (259)
T 1oaa_A 4 LGC-AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQP-DLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CBS-EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCT-TSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCC-cEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCC-CCeEEEEecCCCCHHHHHHHHHH
Confidence 446 9999999999999999999999 899999998765433333333333211 25789999999999999887754
Q ss_pred -------CCCc--EEEEcCcccCc--c-----CCcCChHHHHHHHHHHHHHHHHHHHHc------CCCEEEEeccceecC
Q 015080 144 -------NAFD--AVMHFAAVAYV--G-----ESTLDPLKYYHNITSNTLVVLESMARH------GVDTLIYSSTCATYG 201 (413)
Q Consensus 144 -------~~~d--vvi~~Ag~~~~--~-----~~~~~~~~~~~~n~~~~~~ll~~~~~~------~~~~iV~~SS~~~~~ 201 (413)
.++| +||||||+... . ...++.+..+++|+.++.++++++... +.++||++||...+.
T Consensus 82 ~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~ 161 (259)
T 1oaa_A 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC
Confidence 2578 99999997532 1 122345568899999988888777643 346899999988764
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhC-CCcEEEEeecceecC
Q 015080 202 EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNS-DMAVMILRYFNVIGS 253 (413)
Q Consensus 202 ~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-gi~~~~lrp~~v~G~ 253 (413)
. ..+...|+.||++.+.+++.++.+. ++++++++||.+-.+
T Consensus 162 ~-----------~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~ 203 (259)
T 1oaa_A 162 P-----------YKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDND 203 (259)
T ss_dssp C-----------CTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSH
T ss_pred C-----------CCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcc
Confidence 2 2336789999999999999999884 499999999988653
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-24 Score=194.43 Aligned_cols=215 Identities=14% Similarity=0.120 Sum_probs=156.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccC--CCHHHHHHHhhc
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL--GDAKAVNKFFSE 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~d~~~~~~~~~~ 143 (413)
.+.+ |++|||||+|+||++++++|+++|++|++++|+..+.+++.+.+.+.. ...+.++.+|+ +|.+++.++++.
T Consensus 11 ~l~~-k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~d~d~~~~~~~~~~~~~ 87 (247)
T 3i1j_A 11 LLKG-RVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG--QPQPLIIALNLENATAQQYRELAAR 87 (247)
T ss_dssp TTTT-CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--SCCCEEEECCTTTCCHHHHHHHHHH
T ss_pred cCCC-CEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--CCCceEEEeccccCCHHHHHHHHHH
Confidence 4556 999999999999999999999999999999986555444555554432 14567777777 999998887765
Q ss_pred -----CCCcEEEEcCcccCccC-----CcCChHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccceecCCCCCCCCC
Q 015080 144 -----NAFDAVMHFAAVAYVGE-----STLDPLKYYHNITSNTLVVLESM----ARHGVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|+||||||+..... ..++.+..+++|+.++.++++++ ++.+.++||++||...+..
T Consensus 88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------- 160 (247)
T 3i1j_A 88 VEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKG------- 160 (247)
T ss_dssp HHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSC-------
T ss_pred HHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCC-------
Confidence 48999999999753321 22345567899999977666665 5556789999999776532
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh----CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN----SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
..+...|+.||++.+.+++.++.+ .|+++++|+||.|..+. . ......
T Consensus 161 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~-------------------~----~~~~~~- 212 (247)
T 3i1j_A 161 ----RANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGM-------------------R----AQAYPD- 212 (247)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHH-------------------H----HHHSTT-
T ss_pred ----CCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCcc-------------------c----hhcccc-
Confidence 233678999999999999999877 47999999999887531 1 111111
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEe
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNV 333 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni 333 (413)
.....+...+|+|+++++++..... -.|+++++
T Consensus 213 ---------------~~~~~~~~p~dva~~~~~l~s~~~~~itG~~i~~ 246 (247)
T 3i1j_A 213 ---------------ENPLNNPAPEDIMPVYLYLMGPDSTGINGQALNA 246 (247)
T ss_dssp ---------------SCGGGSCCGGGGTHHHHHHHSGGGTTCCSCEEEC
T ss_pred ---------------cCccCCCCHHHHHHHHHHHhCchhccccCeeecC
Confidence 1112456789999999999875432 23456554
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.6e-24 Score=199.86 Aligned_cols=270 Identities=16% Similarity=0.113 Sum_probs=175.7
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC------CCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHH
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL------SRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNK 139 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 139 (413)
.+.+ |++|||||+|+||++++++|+++|++|++.++. .++.+...+...++...+.. ..+|++|.+++++
T Consensus 6 ~l~g-k~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~---~~~D~~~~~~~~~ 81 (319)
T 1gz6_A 6 RFDG-RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK---AVANYDSVEAGEK 81 (319)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCE---EEEECCCGGGHHH
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCe---EEEeCCCHHHHHH
Confidence 3556 999999999999999999999999999998763 23333333333333222222 3589999987776
Q ss_pred Hhhc-----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHH----HHHHHHHcCCCEEEEecccee-cCCCCC
Q 015080 140 FFSE-----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLV----VLESMARHGVDTLIYSSTCAT-YGEPEK 205 (413)
Q Consensus 140 ~~~~-----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~iV~~SS~~~-~~~~~~ 205 (413)
++++ .++|+||||||+..... ..++.+..+++|+.|+.+ +++.|++.+.++||++||... ++..
T Consensus 82 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~~-- 159 (319)
T 1gz6_A 82 LVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNF-- 159 (319)
T ss_dssp HHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT--
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCC--
Confidence 6543 57999999999865432 233455688999999555 455556677789999999654 4421
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHh
Q 015080 206 MPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAAR 282 (413)
Q Consensus 206 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (413)
+...|+.||++.+.+++.++.+ .|+++++|+||.+ .+... ...+
T Consensus 160 ----------~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~---------------~~~~------- 206 (319)
T 1gz6_A 160 ----------GQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTE---------------TVMP------- 206 (319)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTG---------------GGSC-------
T ss_pred ----------CCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-ccccc---------------ccCC-------
Confidence 2678999999999999999887 5899999999986 32100 0000
Q ss_pred ccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecC
Q 015080 283 GIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEP 362 (413)
Q Consensus 283 ~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~ 362 (413)
.....++.++|+|+++++++..+....+++|++.+|..... .+....
T Consensus 207 ------------------~~~~~~~~p~dvA~~~~~l~s~~~~~tG~~~~v~GG~~~~~---------------~~~~~~ 253 (319)
T 1gz6_A 207 ------------------EDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKL---------------RWERTL 253 (319)
T ss_dssp ------------------HHHHHHSCGGGTHHHHHHHTSTTCCCCSCEEEEETTEEEEE---------------EEEECC
T ss_pred ------------------hhhhccCCHHHHHHHHHHHhCchhhcCCCEEEECCCeEEEE---------------eeeecc
Confidence 00123467899999999988764433567999977643211 000000
Q ss_pred CCCCCccccccCHHHHH-------HhcCcccccccHHHHHHHHHHHHHhccCC
Q 015080 363 RRPGDYAEVYSDPTKIR-------LELNWTAKYTNLQESLEIAWRWQKSHRGG 408 (413)
Q Consensus 363 ~~~~~~~~~~~d~~k~~-------~~lG~~p~~~~~~e~l~~~~~~~~~~~~~ 408 (413)
...........|.+.++ +..|+.... ++.+.+++.+++..+..+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 305 (319)
T 1gz6_A 254 GAIVRKRNQPMTPEAVRDNWVKICDFSNASKPK-SIQESTGGIIEVLHKIDSE 305 (319)
T ss_dssp CEECCBTTBCCCHHHHHHTHHHHTCCTTCBCCC-CHHHHHHHHHHHHHHHC--
T ss_pred ceeccCCCCCCCHHHHHHHHHHhhccccccCCC-chHHHHHHHHHHHhhcccc
Confidence 00000001122333333 334666555 8899999999988766543
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=195.64 Aligned_cols=207 Identities=14% Similarity=0.062 Sum_probs=150.7
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |+||||||+||||++++++|+++|++|++++|+....+...+.+.+.. ..++.++.+|++|.+++++++++
T Consensus 25 ~~~~-k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~ 101 (286)
T 1xu9_A 25 MLQG-KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG--AASAHYIAGTMEDMTFAEQFVAQAG 101 (286)
T ss_dssp GGTT-CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT--CSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred hcCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3456 899999999999999999999999999999886544333333333321 13688999999999999888764
Q ss_pred ---CCCcEEEEc-CcccCccCC---cCChHHHHHHHHHHHHHHHHHHHHc---CCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHF-AAVAYVGES---TLDPLKYYHNITSNTLVVLESMARH---GVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 ---~~~dvvi~~-Ag~~~~~~~---~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+|||| ||+...... .++.+..+++|+.++.++++++... +.++||++||.+.+...
T Consensus 102 ~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 171 (286)
T 1xu9_A 102 KLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAY---------- 171 (286)
T ss_dssp HHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCC----------
T ss_pred HHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccccCC----------
Confidence 489999999 576533222 2233557889999977766655431 24799999998766432
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh-----CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN-----SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
.+...|+.||++.+.+++.++.+ .|+++++++||.|.++. .. .. ...
T Consensus 172 -~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~-------------------~~---~~-~~~---- 223 (286)
T 1xu9_A 172 -PMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET-------------------AM---KA-VSG---- 223 (286)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH-------------------HH---HH-SCG----
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChh-------------------HH---Hh-ccc----
Confidence 23678999999999999988776 48999999999987642 11 00 010
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP 325 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 325 (413)
.....+++++|+|++++.++.....
T Consensus 224 ------------~~~~~~~~~~~vA~~i~~~~~~~~~ 248 (286)
T 1xu9_A 224 ------------IVHMQAAPKEECALEIIKGGALRQE 248 (286)
T ss_dssp ------------GGGGGCBCHHHHHHHHHHHHHTTCS
T ss_pred ------------cccCCCCCHHHHHHHHHHHHhcCCc
Confidence 0113468999999999999986543
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-24 Score=196.29 Aligned_cols=204 Identities=16% Similarity=0.056 Sum_probs=153.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHH-CCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 71 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
|+||||||+||||++++++|++ .|++|++++|+....++..+.+... +.++.++.+|++|.+++++++++ .
T Consensus 5 k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (276)
T 1wma_A 5 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE---GLSPRFHQLDIDDLQSIRALRDFLRKEYG 81 (276)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc---CCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999 9999999987544333333333322 35789999999999999988864 3
Q ss_pred CCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHHcC--CCEEEEeccceecCCC-C----------CCC
Q 015080 145 AFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMARHG--VDTLIYSSTCATYGEP-E----------KMP 207 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~iV~~SS~~~~~~~-~----------~~~ 207 (413)
++|+||||||+...... .++.+..+++|+.++.++++++.+.- .++||++||..++... . ..+
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~~~ 161 (276)
T 1wma_A 82 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSET 161 (276)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSS
T ss_pred CCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhccccc
Confidence 89999999997644322 13345679999999999999998752 3599999997766320 0 001
Q ss_pred CCCC-------------------CCCCCCChhHHHHHHHHHHHHHHHhh-------CCCcEEEEeecceecCCCCCCCCC
Q 015080 208 ITEE-------------------TPQAPINPYGKAKKMAEDIILDFSKN-------SDMAVMILRYFNVIGSDPEGRLGE 261 (413)
Q Consensus 208 ~~e~-------------------~~~~~~~~Y~~sK~~~e~~~~~~~~~-------~gi~~~~lrp~~v~G~~~~~~~~~ 261 (413)
++|+ .+..|...|+.||++.+.+++.++.+ .|+++++|+||.|.++...
T Consensus 162 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~----- 236 (276)
T 1wma_A 162 ITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAG----- 236 (276)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTC-----
T ss_pred cchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCC-----
Confidence 1111 11234579999999999999998876 4899999999999875310
Q ss_pred CCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc
Q 015080 262 APRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA 323 (413)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 323 (413)
. ..+++++|+|++++.++..+
T Consensus 237 ----------~-------------------------------~~~~~~~~~a~~~~~l~~~~ 257 (276)
T 1wma_A 237 ----------P-------------------------------KATKSPEEGAETPVYLALLP 257 (276)
T ss_dssp ----------T-------------------------------TCSBCHHHHTHHHHHHHSCC
T ss_pred ----------c-------------------------------cccCChhHhhhhHhhhhcCc
Confidence 0 12578999999999999744
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=198.36 Aligned_cols=184 Identities=15% Similarity=0.032 Sum_probs=133.8
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH-HHHHHHhhc--
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA-KAVNKFFSE-- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~-- 143 (413)
..+ |+||||||+||||.++|++|+++|++|++++|+..+.++..+.+.+.. +.++.++.+|++|. ++++++++.
T Consensus 10 ~~~-k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~~v~~~~~~~~ 86 (311)
T 3o26_A 10 TKR-RCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN--HENVVFHQLDVTDPIATMSSLADFIK 86 (311)
T ss_dssp --C-CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCC-cEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CCceEEEEccCCCcHHHHHHHHHHHH
Confidence 445 899999999999999999999999999999986554444444443321 24799999999998 887777653
Q ss_pred ---CCCcEEEEcCcccCcc----------------------------------CCcCChHHHHHHHHHHHHHHHHH----
Q 015080 144 ---NAFDAVMHFAAVAYVG----------------------------------ESTLDPLKYYHNITSNTLVVLES---- 182 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~----------------------------------~~~~~~~~~~~~n~~~~~~ll~~---- 182 (413)
.++|+||||||+.... ...+..+..+++|+.|+..++++
T Consensus 87 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~ 166 (311)
T 3o26_A 87 THFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPL 166 (311)
T ss_dssp HHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHh
Confidence 5899999999986421 11223455689999995555554
Q ss_pred HHHcCCCEEEEeccceecCCCCC--------------------------------CCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 183 MARHGVDTLIYSSTCATYGEPEK--------------------------------MPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 183 ~~~~~~~~iV~~SS~~~~~~~~~--------------------------------~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
+++.+.++||++||...+..... ....+...+.+...|+.||++.+.+
T Consensus 167 l~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~ 246 (311)
T 3o26_A 167 LQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAY 246 (311)
T ss_dssp HTTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHHH
T ss_pred hccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHHH
Confidence 45556789999999775432100 0011111223457899999999999
Q ss_pred HHHHHhhC-CCcEEEEeecceecC
Q 015080 231 ILDFSKNS-DMAVMILRYFNVIGS 253 (413)
Q Consensus 231 ~~~~~~~~-gi~~~~lrp~~v~G~ 253 (413)
++.++.+. ++++++|+||.|..+
T Consensus 247 ~~~la~e~~~i~v~~v~PG~v~T~ 270 (311)
T 3o26_A 247 TRVLANKIPKFQVNCVCPGLVKTE 270 (311)
T ss_dssp HHHHHHHCTTSEEEEECCCSBCSG
T ss_pred HHHHHhhcCCceEEEecCCceecC
Confidence 99999984 699999999999865
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=197.33 Aligned_cols=173 Identities=19% Similarity=0.163 Sum_probs=136.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhc---CCCCceEEEEccCCCHHHHHHHhhc---C
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELF---PEPGRLQFIYADLGDAKAVNKFFSE---N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~---~ 144 (413)
|+||||||+|+||++++++|+++|++|++++|..++.+...+.+.... ..+.++.++.+|++|.+++++++++ .
T Consensus 3 k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~g 82 (327)
T 1jtv_A 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEG 82 (327)
T ss_dssp EEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhcC
Confidence 899999999999999999999999999988876666555544444321 1235789999999999999999875 4
Q ss_pred CCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHH----HHHcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLES----MARHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
++|+||||||+..... ..++.+..+++|+.++.+++++ |++.+.++||++||...+... ..
T Consensus 83 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~-----------~~ 151 (327)
T 1jtv_A 83 RVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGL-----------PF 151 (327)
T ss_dssp CCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCC-----------TT
T ss_pred CCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccCC-----------CC
Confidence 6999999999764332 2233456789999997776665 566677899999998765322 22
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
...|+.||++.+.+++.++.+ .|+++++|+||.|.++.
T Consensus 152 ~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 152 NDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChH
Confidence 568999999999999999886 68999999999998764
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-23 Score=190.61 Aligned_cols=172 Identities=18% Similarity=0.108 Sum_probs=131.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+.+ |++|||||+|+||++++++|+++|++|++++|+....+++.+.+... +.++.++.+|++|+++++++++.
T Consensus 3 l~~-k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (260)
T 2qq5_A 3 MNG-QVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSL---GGQCVPVVCDSSQESEVRSLFEQVDR 78 (260)
T ss_dssp TTT-CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH---SSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc---CCceEEEECCCCCHHHHHHHHHHHHH
Confidence 345 89999999999999999999999999999987644333333333332 35788999999999998877653
Q ss_pred ---CCCcEEEEcCc--cc-----Ccc----CCcCChHHHHHHHHHHH----HHHHHHHHHcCCCEEEEeccceecCCCCC
Q 015080 144 ---NAFDAVMHFAA--VA-----YVG----ESTLDPLKYYHNITSNT----LVVLESMARHGVDTLIYSSTCATYGEPEK 205 (413)
Q Consensus 144 ---~~~dvvi~~Ag--~~-----~~~----~~~~~~~~~~~~n~~~~----~~ll~~~~~~~~~~iV~~SS~~~~~~~~~ 205 (413)
.++|+|||||| +. ... ...+..+..+++|+.++ +.+++.|++.+.++||++||...+..
T Consensus 79 ~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--- 155 (260)
T 2qq5_A 79 EQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQY--- 155 (260)
T ss_dssp HHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSC---
T ss_pred hcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCC---
Confidence 57999999994 32 111 12233456777888775 45556666667789999999876531
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 206 MPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 206 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
.+..+|+.||++.+.+++.++.+ +|+++++|+||.|.++.
T Consensus 156 ---------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 198 (260)
T 2qq5_A 156 ---------MFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTEL 198 (260)
T ss_dssp ---------CSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTT
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHH
Confidence 12468999999999999999876 68999999999998864
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=8.5e-23 Score=188.69 Aligned_cols=236 Identities=12% Similarity=0.047 Sum_probs=157.8
Q ss_pred CCCceEEEEEcC--CChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGG--AGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGa--sG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+ |++||||| +|+||++++++|+++|++|++++|+.. ...+.+.+.. +.++.++.+|++|++++++++++
T Consensus 5 l~~-k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~---~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (269)
T 2h7i_A 5 LDG-KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL---RLIQRITDRL--PAKAPLLELDVQNEEHLASLAGRV 78 (269)
T ss_dssp TTT-CEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCH---HHHHHHHTTS--SSCCCEEECCTTCHHHHHHHHHHH
T ss_pred cCC-CEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChH---HHHHHHHHhc--CCCceEEEccCCCHHHHHHHHHHH
Confidence 446 89999999 999999999999999999999987432 2112222211 34688999999999999988865
Q ss_pred ----C---CCcEEEEcCcccCc-----cC----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCC
Q 015080 144 ----N---AFDAVMHFAAVAYV-----GE----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEK 205 (413)
Q Consensus 144 ----~---~~dvvi~~Ag~~~~-----~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~ 205 (413)
. ++|+||||||+... .. ..++.+..+++|+.++.++++++... ..++||++||...++
T Consensus 79 ~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~---- 154 (269)
T 2h7i_A 79 TEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA---- 154 (269)
T ss_dssp HHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC----
T ss_pred HHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc----
Confidence 3 89999999997641 11 22334557889999999999888753 236999999966432
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHh
Q 015080 206 MPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAAR 282 (413)
Q Consensus 206 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (413)
..+...|+.||++.+.+++.++.+ .|+++++|+||.|..+......... .++. .............
T Consensus 155 --------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~-~~~~--~~~~~~~~~~~~~ 223 (269)
T 2h7i_A 155 --------MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGA-LGEE--AGAQIQLLEEGWD 223 (269)
T ss_dssp --------CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTT-TCHH--HHHHHHHHHHHHH
T ss_pred --------cCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhcccccc-chhh--HHHHHHHHHHhhh
Confidence 223678999999999999999887 5899999999998764200000000 0000 0000000011111
Q ss_pred ccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 283 GIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 283 ~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...+ -+ +.+...+|+|+++++++.... ...++++.+.+|..
T Consensus 224 ~~~p------------~~---rr~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 265 (269)
T 2h7i_A 224 QRAP------------IG---WNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAH 265 (269)
T ss_dssp HHCT------------TC---CCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTGG
T ss_pred ccCC------------cc---cCCCCHHHHHHHHHHHhCchhccCcceEEEecCCee
Confidence 1111 00 136678999999999997432 23457888877643
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=200.12 Aligned_cols=223 Identities=14% Similarity=0.023 Sum_probs=159.8
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+.+ |++|||||+|+||.++++.|+++|++|++++|.. ..+...+...+. ++.++.+|++|.+++++++++
T Consensus 210 ~l~g-k~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~-~~~~l~~~~~~~-----~~~~~~~Dvtd~~~v~~~~~~~~ 282 (454)
T 3u0b_A 210 PLDG-KVAVVTGAARGIGATIAEVFARDGATVVAIDVDG-AAEDLKRVADKV-----GGTALTLDVTADDAVDKITAHVT 282 (454)
T ss_dssp TTTT-CEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGG-GHHHHHHHHHHH-----TCEEEECCTTSTTHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCc-cHHHHHHHHHHc-----CCeEEEEecCCHHHHHHHHHHHH
Confidence 3466 9999999999999999999999999999998742 122233333332 467899999999999888765
Q ss_pred ---C-CCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHc----CCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---N-AFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARH----GVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~-~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
. ++|+||||||+..... ..+..+..+++|+.++.++.+++... +.++||++||...+....
T Consensus 283 ~~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~~------- 355 (454)
T 3u0b_A 283 EHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNR------- 355 (454)
T ss_dssp HHSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCCT-------
T ss_pred HHcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCCC-------
Confidence 2 4999999999875433 22334557889999999999988765 678999999977653322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
....|+.+|++.+.+++.++.+ .|+++++|+||.|.++.... +............
T Consensus 356 ----g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~---------------~~~~~~~~~~~~~--- 413 (454)
T 3u0b_A 356 ----GQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEA---------------IPLATREVGRRLN--- 413 (454)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC-------------------------CHHHHHSB---
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhh---------------cchhhHHHHHhhc---
Confidence 2678999999999999999877 69999999999998764211 0000000111101
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
....+...+|+|+++++++.... ...++++++.++.
T Consensus 414 -------------~l~r~g~pedvA~~v~fL~s~~a~~itG~~i~vdGG~ 450 (454)
T 3u0b_A 414 -------------SLFQGGQPVDVAELIAYFASPASNAVTGNTIRVCGQA 450 (454)
T ss_dssp -------------TTSSCBCHHHHHHHHHHHHCGGGTTCCSCEEEESSSB
T ss_pred -------------cccCCCCHHHHHHHHHHHhCCccCCCCCcEEEECCcc
Confidence 11234678999999999887432 2355799997664
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-23 Score=188.40 Aligned_cols=219 Identities=11% Similarity=0.062 Sum_probs=143.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEE-e--cCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHH-HHHhhc-CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIV-D--NLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAV-NKFFSE-NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~-~~~~~~-~~ 145 (413)
|++|||||+|+||++++++|+++|++|+++ + |+.. ...+...++ . +..+. |..+.+.+ +++.++ .+
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~---~~~~~~~~~--~--~~~~~--~~~~v~~~~~~~~~~~g~ 72 (244)
T 1zmo_A 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAA---ERQRFESEN--P--GTIAL--AEQKPERLVDATLQHGEA 72 (244)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHH---HHHHHHHHS--T--TEEEC--CCCCGGGHHHHHGGGSSC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHH---HHHHHHHHh--C--CCccc--CHHHHHHHHHHHHHHcCC
Confidence 899999999999999999999999999998 4 6432 222222222 1 22221 44333332 223322 57
Q ss_pred CcEEEEcCcccCc---cCC----cCChHHHHHHHHHHHHHHHH----HHHHcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYV---GES----TLDPLKYYHNITSNTLVVLE----SMARHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 146 ~dvvi~~Ag~~~~---~~~----~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
+|+||||||+... ... .++.+..+++|+.++.++++ .|++.+.++||++||...+...
T Consensus 73 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~----------- 141 (244)
T 1zmo_A 73 IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPL----------- 141 (244)
T ss_dssp EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC-----------
T ss_pred CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCC-----------
Confidence 9999999998654 222 23345578899999666554 4556667899999998776432
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchH-HHHHHHHhc-ccccee
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRIS-GACFDAARG-IIAGLK 289 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~i~ 289 (413)
.+...|+.||++.+.+++.++.+ .|+++++|+||.|..+.... . ..+. +........ ..+
T Consensus 142 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~---------~---~~~~~~~~~~~~~~~~~p--- 206 (244)
T 1zmo_A 142 AYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFP---------T---SDWENNPELRERVDRDVP--- 206 (244)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBC---------H---HHHHHCHHHHHHHHHHCT---
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccc---------c---ccccchHHHHHHHhcCCC---
Confidence 23678999999999999999887 58999999999988763100 0 0100 001111111 111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
...+...+|+|+++++++..... ..++++.+.+|.
T Consensus 207 -------------~~r~~~pe~vA~~v~~l~s~~~~~~tG~~i~vdgG~ 242 (244)
T 1zmo_A 207 -------------LGRLGRPDEMGALITFLASRRAAPIVGQFFAFTGGY 242 (244)
T ss_dssp -------------TCSCBCHHHHHHHHHHHHTTTTGGGTTCEEEESTTC
T ss_pred -------------CCCCcCHHHHHHHHHHHcCccccCccCCEEEeCCCC
Confidence 12367899999999999875332 235788886653
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-22 Score=197.44 Aligned_cols=224 Identities=17% Similarity=0.120 Sum_probs=160.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCE-EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~~ 145 (413)
+++|||||+|+||.++++.|+++|++ |++++|+........+...++...+.++.++.||++|.+++.++++. .+
T Consensus 227 ~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~~g~ 306 (486)
T 2fr1_A 227 GTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDVP 306 (486)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999994 99998865433333333333333356799999999999999999865 36
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhH
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYG 221 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~ 221 (413)
+|+||||||+..... ..+.....+++|+.|+.++.+++.+.+.++||++||.+.+....+ ...|+
T Consensus 307 ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g~~g-----------~~~Ya 375 (486)
T 2fr1_A 307 LSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAPG-----------LGGYA 375 (486)
T ss_dssp EEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCTT-----------CTTTH
T ss_pred CcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCCCCC-----------CHHHH
Confidence 799999999865432 223344577889999999999999888899999999765422222 57899
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCc
Q 015080 222 KAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGT 301 (413)
Q Consensus 222 ~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 301 (413)
.+|...+.+.+.+.. .|+++++|+||.+.+++.. ... .... + ..
T Consensus 376 aaka~l~~la~~~~~-~gi~v~~i~pG~~~~~gm~------------------~~~---~~~~---~-----------~~ 419 (486)
T 2fr1_A 376 PGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMA------------------EGP---VADR---F-----------RR 419 (486)
T ss_dssp HHHHHHHHHHHHHHH-TTCCCEEEEECCBC------------------------------------C-----------TT
T ss_pred HHHHHHHHHHHHHHh-cCCeEEEEECCeeCCCccc------------------chh---HHHH---H-----------Hh
Confidence 999999999887765 6999999999998875310 000 0000 0 00
Q ss_pred eeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHH
Q 015080 302 CVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEAC 348 (413)
Q Consensus 302 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i 348 (413)
....+++.+|+++++..++..+... +.+. .+.|..+...+
T Consensus 420 ~g~~~i~~e~~a~~l~~~l~~~~~~----~~v~---~~d~~~~~~~~ 459 (486)
T 2fr1_A 420 HGVIEMPPETACRALQNALDRAEVC----PIVI---DVRWDRFLLAY 459 (486)
T ss_dssp TTEECBCHHHHHHHHHHHHHTTCSS----CEEC---EECHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCCe----EEEE---eCCHHHHhhhh
Confidence 1246799999999999999865542 2232 25676665543
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=182.84 Aligned_cols=231 Identities=10% Similarity=-0.031 Sum_probs=150.5
Q ss_pred CCCCceEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEecCCC--------CCchhhhhhhhhcCCC--CceEEEEcc---
Q 015080 66 HEEGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSR--------GNIGAVKVLQELFPEP--GRLQFIYAD--- 130 (413)
Q Consensus 66 ~~~~~k~vlITGas--G~IG~~la~~L~~~G~~V~~~~r~~~--------~~~~~~~~~~~~~~~~--~~~~~~~~D--- 130 (413)
.+.+ |++|||||+ |+||++++++|+++|++|++++|+.. +.+... .+.++.... .....+.+|
T Consensus 5 ~l~~-k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 82 (297)
T 1d7o_A 5 DLRG-KRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFD-QSRVLPDGSLMEIKKVYPLDAVF 82 (297)
T ss_dssp CCTT-CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTT-GGGBCTTSSBCCEEEEEEECTTC
T ss_pred ccCC-CEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhh-hhhhhccccccccccccccceec
Confidence 3456 899999999 99999999999999999999875310 001111 111111000 112333343
Q ss_pred -----CC----C--------HHHHHHHhhc-----CCCcEEEEcCcccC--ccC----CcCChHHHHHHHHHHHHHHHHH
Q 015080 131 -----LG----D--------AKAVNKFFSE-----NAFDAVMHFAAVAY--VGE----STLDPLKYYHNITSNTLVVLES 182 (413)
Q Consensus 131 -----l~----d--------~~~~~~~~~~-----~~~dvvi~~Ag~~~--~~~----~~~~~~~~~~~n~~~~~~ll~~ 182 (413)
++ | ++++++++++ .++|+||||||+.. ... ..++.+..+++|+.++.+++++
T Consensus 83 ~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ 162 (297)
T 1d7o_A 83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSH 162 (297)
T ss_dssp CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred cchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHH
Confidence 22 2 3445554433 57999999999642 111 2234556789999999999988
Q ss_pred HHHc--CCCEEEEeccceecCCCCCCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHHhh----CCCcEEEEeecceecCCC
Q 015080 183 MARH--GVDTLIYSSTCATYGEPEKMPITEETPQAPI-NPYGKAKKMAEDIILDFSKN----SDMAVMILRYFNVIGSDP 255 (413)
Q Consensus 183 ~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~-~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~G~~~ 255 (413)
+... ..++||++||...+.... .. ..|+.||++.+.+++.++.+ +|+++++|+||.|.++..
T Consensus 163 ~~~~m~~~g~iv~isS~~~~~~~~-----------~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T~~~ 231 (297)
T 1d7o_A 163 FLPIMNPGGASISLTYIASERIIP-----------GYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAA 231 (297)
T ss_dssp HGGGEEEEEEEEEEECGGGTSCCT-----------TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCS
T ss_pred HHHHhccCceEEEEeccccccCCC-----------CcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccccchh
Confidence 8764 236999999977653221 23 57999999999999999876 589999999999998753
Q ss_pred CCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEec
Q 015080 256 EGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVG 334 (413)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~ 334 (413)
... ...+..........+ ...+..++|+|+++++++.... ...++++++.
T Consensus 232 ~~~-------------~~~~~~~~~~~~~~p----------------~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vd 282 (297)
T 1d7o_A 232 KAI-------------GFIDTMIEYSYNNAP----------------IQKTLTADEVGNAAAFLVSPLASAITGATIYVD 282 (297)
T ss_dssp SCC-------------SHHHHHHHHHHHHSS----------------SCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEES
T ss_pred hhc-------------cccHHHHHHhhccCC----------------CCCCCCHHHHHHHHHHHhCccccCCCCCEEEEC
Confidence 210 112222222222111 1135789999999999887432 2345799998
Q ss_pred CCCc
Q 015080 335 TGKG 338 (413)
Q Consensus 335 ~~~~ 338 (413)
+|..
T Consensus 283 gG~~ 286 (297)
T 1d7o_A 283 NGLN 286 (297)
T ss_dssp TTGG
T ss_pred CCce
Confidence 7743
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=194.97 Aligned_cols=225 Identities=17% Similarity=0.166 Sum_probs=164.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
++||||||+|+||.+++++|+++|+ +|++++|+........+...++...+.++.++.||++|.+++.++++..++|+|
T Consensus 260 ~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld~V 339 (511)
T 2z5l_A 260 GTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPPNAV 339 (511)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCcEE
Confidence 8999999999999999999999999 688988865433334444444444456799999999999999999987779999
Q ss_pred EEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEecccee-cCCCCCCCCCCCCCCCCCChhHHH
Q 015080 150 MHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMARH-GVDTLIYSSTCAT-YGEPEKMPITEETPQAPINPYGKA 223 (413)
Q Consensus 150 i~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~iV~~SS~~~-~~~~~~~~~~e~~~~~~~~~Y~~s 223 (413)
|||||+...... .+..+..+++|+.++.++.+++... +.++||++||... +|.. +...|+.+
T Consensus 340 Vh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~~------------g~~~Yaaa 407 (511)
T 2z5l_A 340 FHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGNA------------GQGAYAAA 407 (511)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCCT------------TBHHHHHH
T ss_pred EECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCCC------------CCHHHHHH
Confidence 999998654322 2234457889999999999998776 6789999999754 4322 25789999
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCcee
Q 015080 224 KKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCV 303 (413)
Q Consensus 224 K~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 303 (413)
|+..+.+++.+.. .|+++++|+||.+-+.+... ... ...+.. ..
T Consensus 408 Ka~ld~la~~~~~-~gi~v~sv~pG~~~~tgm~~--------------~~~---~~~~~~------------------~g 451 (511)
T 2z5l_A 408 NAALDALAERRRA-AGLPATSVAWGLWGGGGMAA--------------GAG---EESLSR------------------RG 451 (511)
T ss_dssp HHHHHHHHHHHHT-TTCCCEEEEECCBCSTTCCC--------------CHH---HHHHHH------------------HT
T ss_pred HHHHHHHHHHHHH-cCCcEEEEECCcccCCcccc--------------ccc---HHHHHh------------------cC
Confidence 9999999988754 79999999999884322100 110 111110 00
Q ss_pred eecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHH
Q 015080 304 RDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKK 350 (413)
Q Consensus 304 ~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~ 350 (413)
..+++.+|+++++..++..+.. .+.+. .+.|..+...+..
T Consensus 452 ~~~l~~e~~a~~l~~al~~~~~----~v~v~---~~d~~~~~~~~~~ 491 (511)
T 2z5l_A 452 LRAMDPDAAVDALLGAMGRNDV----CVTVV---DVDWERFAPATNA 491 (511)
T ss_dssp BCCBCHHHHHHHHHHHHHHTCS----EEEEC---CBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCC----EEEEE---eCCHHHHHhhhcc
Confidence 2458999999999999987654 33343 3567666665543
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-21 Score=190.34 Aligned_cols=172 Identities=20% Similarity=0.161 Sum_probs=138.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~~ 145 (413)
+++|||||+|+||.++++.|+++|+ +|++++|.....+...+...++...+.++.++.||++|.+++.+++++ .+
T Consensus 240 ~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g~ 319 (496)
T 3mje_A 240 GSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDAP 319 (496)
T ss_dssp SEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTSC
T ss_pred CEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 7999999999999999999999999 788888865444444444444444467899999999999999999875 46
Q ss_pred CcEEEEcCccc-CccC----CcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChh
Q 015080 146 FDAVMHFAAVA-YVGE----STLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPY 220 (413)
Q Consensus 146 ~dvvi~~Ag~~-~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y 220 (413)
+|+||||||+. .... ..+..+..+++|+.++.++.+.+.+.+.++||++||.+.+-... ....|
T Consensus 320 ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~g~~-----------g~~~Y 388 (496)
T 3mje_A 320 LTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVWGSG-----------GQPGY 388 (496)
T ss_dssp EEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHTTCT-----------TCHHH
T ss_pred CeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcCCCC-----------CcHHH
Confidence 99999999986 3322 22234557889999999999999988889999999976543222 26789
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 221 GKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 221 ~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
+.+|+..+.+++.+.. .|+++++|.||.+.+++
T Consensus 389 aAaKa~ldala~~~~~-~Gi~v~sV~pG~w~~~g 421 (496)
T 3mje_A 389 AAANAYLDALAEHRRS-LGLTASSVAWGTWGEVG 421 (496)
T ss_dssp HHHHHHHHHHHHHHHH-TTCCCEEEEECEESSSC
T ss_pred HHHHHHHHHHHHHHHh-cCCeEEEEECCcccCCc
Confidence 9999999999987765 79999999999987754
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=191.03 Aligned_cols=213 Identities=12% Similarity=0.095 Sum_probs=149.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccC-CCHHHH-HHHhhc
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL-GDAKAV-NKFFSE 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-~d~~~~-~~~~~~ 143 (413)
.+++ |++|||||+++||.++|++|+++|++|++.++ +..+++.+.+.+. +..+..+.+|+ ++.+.+ +++.++
T Consensus 319 ~l~g-kvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~--~~~~~~~~~i~~~---g~~~~~~~~Dv~~~~~~~~~~~~~~ 392 (604)
T 2et6_A 319 SLKD-KVVLITGAGAGLGKEYAKWFAKYGAKVVVNDF--KDATKTVDEIKAA---GGEAWPDQHDVAKDSEAIIKNVIDK 392 (604)
T ss_dssp CCTT-CEEEESSCSSHHHHHHHHHHHHTTCEEEEECS--SCCHHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHH
T ss_pred ccCC-CeEEEECcchHHHHHHHHHHHHCCCEEEEEeC--ccHHHHHHHHHhc---CCeEEEEEcChHHHHHHHHHHHHHh
Confidence 4567 99999999999999999999999999999875 2334444444432 35677788999 665543 333332
Q ss_pred -CCCcEEEEcCcccCccC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
+++|+||||||+..... ..++.+..+++|+.| ++.+++.|++.+.++||++||.+.+-...
T Consensus 393 ~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~~~---------- 462 (604)
T 2et6_A 393 YGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNF---------- 462 (604)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCT----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCC----------
Confidence 68999999999865433 223345578899998 55667777777778999999976542222
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEe
Q 015080 215 APINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVK 291 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 291 (413)
....|+.||++...+++.++.| +||++++|.||. -.+ +...... ..
T Consensus 463 -~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~-------------------m~~~~~~-----~~----- 511 (604)
T 2et6_A 463 -GQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETA-------------------MTLSIMR-----EQ----- 511 (604)
T ss_dssp -TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCC-------------------C------------------
T ss_pred -CChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCc-------------------cccccCc-----hh-----
Confidence 2568999999999999999988 689999999983 221 1110000 00
Q ss_pred cccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCC
Q 015080 292 GTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTG 336 (413)
Q Consensus 292 g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~ 336 (413)
..+....+|+|.++++++.......++++.+.+|
T Consensus 512 -----------~~~~~~pe~vA~~v~~L~s~~~~itG~~~~vdGG 545 (604)
T 2et6_A 512 -----------DKNLYHADQVAPLLVYLGTDDVPVTGETFEIGGG 545 (604)
T ss_dssp ------------CCSSCGGGTHHHHHHTTSTTCCCCSCEEEEETT
T ss_pred -----------hccCCCHHHHHHHHHHHhCCccCCCCcEEEECCC
Confidence 0123577999999998887543345678888766
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=199.81 Aligned_cols=214 Identities=13% Similarity=0.051 Sum_probs=144.1
Q ss_pred CCCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEec---------CCCCCchhhhhhhhhcCCCCceEEEEccCCCHH
Q 015080 65 QHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN---------LSRGNIGAVKVLQELFPEPGRLQFIYADLGDAK 135 (413)
Q Consensus 65 ~~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r---------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 135 (413)
.++++ |++|||||+|+||+++|++|+++|++|++++| +....+.+.+.+.. .+.. ..+|++|.+
T Consensus 15 ~~l~g-k~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~---~~~~---~~~D~~d~~ 87 (613)
T 3oml_A 15 LRYDG-RVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRK---AGGE---AVADYNSVI 87 (613)
T ss_dssp CCCTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHH---TTCC---EEECCCCGG
T ss_pred cCCCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHH---hCCe---EEEEeCCHH
Confidence 35677 99999999999999999999999999999887 22222223333332 2222 248999998
Q ss_pred HHHHHhhc-----CCCcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHH----HHHHHcCCCEEEEeccceecCC
Q 015080 136 AVNKFFSE-----NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVL----ESMARHGVDTLIYSSTCATYGE 202 (413)
Q Consensus 136 ~~~~~~~~-----~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll----~~~~~~~~~~iV~~SS~~~~~~ 202 (413)
++++++++ .++|+||||||+..... ..++.+..+++|+.|+.+++ +.|++.+.++||++||.+.+..
T Consensus 88 ~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~ 167 (613)
T 3oml_A 88 DGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYG 167 (613)
T ss_dssp GHHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHC
T ss_pred HHHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCC
Confidence 88887764 47999999999875433 23345567889999965554 4556677789999999765432
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHH
Q 015080 203 PEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFD 279 (413)
Q Consensus 203 ~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (413)
. .+...|+.||++.+.+++.++.+ .||++++|.||.+- +... ...
T Consensus 168 ~-----------~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t-~~~~---------------~~~----- 215 (613)
T 3oml_A 168 N-----------FGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAAS-RMTE---------------GIL----- 215 (613)
T ss_dssp C-----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------C---------------CCC-----
T ss_pred C-----------CCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC-hhhh---------------hcc-----
Confidence 2 22678999999999999999888 58999999998642 1100 000
Q ss_pred HHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCC
Q 015080 280 AARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGK 337 (413)
Q Consensus 280 ~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~ 337 (413)
.......+..+|+|+++++++.......++++++.+|.
T Consensus 216 --------------------~~~~~~~~~pedvA~~v~~L~s~~~~~tG~~i~vdGG~ 253 (613)
T 3oml_A 216 --------------------PDILFNELKPKLIAPVVAYLCHESCEDNGSYIESAAGW 253 (613)
T ss_dssp --------------------CHHHHTTCCGGGTHHHHHHTTSTTCCCCSCEEEEETTE
T ss_pred --------------------chhhhhcCCHHHHHHHHHHhcCCCcCCCceEEEECCCe
Confidence 00112335779999999998876543456788887653
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=8.6e-21 Score=180.30 Aligned_cols=172 Identities=10% Similarity=-0.012 Sum_probs=124.1
Q ss_pred eEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEecCC---------CCCchhhhhhhhhcCCCCceEEEEccCCCH--H--
Q 015080 71 THVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLS---------RGNIGAVKVLQELFPEPGRLQFIYADLGDA--K-- 135 (413)
Q Consensus 71 k~vlITGasG--~IG~~la~~L~~~G~~V~~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~--~-- 135 (413)
|++|||||++ +||.++|++|+++|++|++.++.. .+.....+...........+.++.+|+++. +
T Consensus 3 k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~ 82 (329)
T 3lt0_A 3 DICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTANDI 82 (329)
T ss_dssp CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGGGC
T ss_pred cEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchhhh
Confidence 8999999875 999999999999999999776432 111111221111111123578889999887 6
Q ss_pred ----------------HHHHHhhc-----CCCcEEEEcCcccC--ccC----CcCChHHHHHHHHHHHHHHHHHHHHc--
Q 015080 136 ----------------AVNKFFSE-----NAFDAVMHFAAVAY--VGE----STLDPLKYYHNITSNTLVVLESMARH-- 186 (413)
Q Consensus 136 ----------------~~~~~~~~-----~~~dvvi~~Ag~~~--~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~-- 186 (413)
++.++++. .++|+||||||+.. ... ..++.+..+++|+.++..+++++...
T Consensus 83 ~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~ 162 (329)
T 3lt0_A 83 DEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIMK 162 (329)
T ss_dssp CHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEE
T ss_pred hhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 66666654 57999999999742 211 22334567889999988887777643
Q ss_pred CCCEEEEeccceecCCCCCCCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhh----CCCcEEEEeecceecC
Q 015080 187 GVDTLIYSSTCATYGEPEKMPITEETPQAPIN-PYGKAKKMAEDIILDFSKN----SDMAVMILRYFNVIGS 253 (413)
Q Consensus 187 ~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~-~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~G~ 253 (413)
..++||++||...+.... ... .|+.||++.+.+++.++.+ .|+++++|.||.|..+
T Consensus 163 ~~g~Iv~isS~~~~~~~~-----------~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 163 PQSSIISLTYHASQKVVP-----------GYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp EEEEEEEEECGGGTSCCT-----------TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred hCCeEEEEeCccccCCCC-----------cchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeech
Confidence 126999999977653222 243 8999999999999998877 4899999999998865
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=187.19 Aligned_cols=225 Identities=16% Similarity=0.163 Sum_probs=157.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCE-EEEE-ecCCCC----------CchhhhhhhhhcCCCCceEEEEccCCCHHHHH
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYR-VTIV-DNLSRG----------NIGAVKVLQELFPEPGRLQFIYADLGDAKAVN 138 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~-V~~~-~r~~~~----------~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 138 (413)
+++|||||+|+||.++++.|+++|++ |+++ +|+... .+...+.+.++...+.++.++.||++|.+++.
T Consensus 252 ~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~~v~ 331 (525)
T 3qp9_A 252 GTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAEAAA 331 (525)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHHHHH
Confidence 89999999999999999999999997 6666 776432 22333333333333568999999999999999
Q ss_pred HHhhc----CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHHcC-----CCEEEEeccceecCCCCC
Q 015080 139 KFFSE----NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMARHG-----VDTLIYSSTCATYGEPEK 205 (413)
Q Consensus 139 ~~~~~----~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~~-----~~~iV~~SS~~~~~~~~~ 205 (413)
+++++ .++|+||||||+...... .+..+..+++|+.|+.++.+++.... .++||++||.+.+-...+
T Consensus 332 ~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g~~g 411 (525)
T 3qp9_A 332 RLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWGGAG 411 (525)
T ss_dssp HHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTCCTT
T ss_pred HHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCCCCC
Confidence 99976 478999999998654332 23345578899999999999988765 789999999776533222
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 206 MPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 206 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
...|+.+|+..+.+++.+.. .|+++++|.||.+-++... -......+...
T Consensus 412 -----------~~~YaaaKa~l~~lA~~~~~-~gi~v~sI~pG~~~tgm~~-----------------~~~~~~~~~~~- 461 (525)
T 3qp9_A 412 -----------QGAYAAGTAFLDALAGQHRA-DGPTVTSVAWSPWEGSRVT-----------------EGATGERLRRL- 461 (525)
T ss_dssp -----------CHHHHHHHHHHHHHHTSCCS-SCCEEEEEEECCBTTSGGG-----------------SSHHHHHHHHT-
T ss_pred -----------CHHHHHHHHHHHHHHHHHHh-CCCCEEEEECCcccccccc-----------------chhhHHHHHhc-
Confidence 67899999999998876654 6999999999998221100 00111111110
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHH
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACK 349 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~ 349 (413)
| ...+..+++++++..++..+... + .+. .+.|..+...+.
T Consensus 462 ------g-----------~~~l~pee~a~~l~~~l~~~~~~---v-~v~---~~dw~~~~~~~~ 501 (525)
T 3qp9_A 462 ------G-----------LRPLAPATALTALDTALGHGDTA---V-TIA---DVDWSSFAPGFT 501 (525)
T ss_dssp ------T-----------BCCBCHHHHHHHHHHHHHHTCSE---E-EEC---CBCHHHHHHHHH
T ss_pred ------C-----------CCCCCHHHHHHHHHHHHhCCCCe---E-EEE---eCCHHHHHhhcc
Confidence 0 13478999999999999976542 2 232 345665555443
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=184.87 Aligned_cols=231 Identities=12% Similarity=0.106 Sum_probs=153.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC------CCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHH
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS------RGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKF 140 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 140 (413)
+++ |+++||||+++||+++|+.|+++|++|++.++.. ++.+.+.+..+++...+..+. +|++|.++++++
T Consensus 6 l~g-kvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~---~d~~d~~~~~~~ 81 (604)
T 2et6_A 6 FKD-KVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAV---ADYNNVLDGDKI 81 (604)
T ss_dssp CTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEE---EECCCTTCHHHH
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEE---EEcCCHHHHHHH
Confidence 456 9999999999999999999999999999988754 111222222333322223333 466655433333
Q ss_pred h----hc-CCCcEEEEcCcccCccC----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCC
Q 015080 141 F----SE-NAFDAVMHFAAVAYVGE----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMP 207 (413)
Q Consensus 141 ~----~~-~~~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~ 207 (413)
+ ++ +++|+||||||+..... ..++.+..+++|+.| ++.+++.|++.+.++||++||.+.+-...
T Consensus 82 v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~~~--- 158 (604)
T 2et6_A 82 VETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNF--- 158 (604)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT---
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCC---
Confidence 3 22 68999999999864432 223345578899999 55677777777778999999976542222
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcc
Q 015080 208 ITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGI 284 (413)
Q Consensus 208 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (413)
....|+.||++...+++.++.| +||++++|.|+. .. .+... .
T Consensus 159 --------~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg~-~T-------------------~m~~~----~--- 203 (604)
T 2et6_A 159 --------GQANYASAKSALLGFAETLAKEGAKYNIKANAIAPLA-RS-------------------RMTES----I--- 203 (604)
T ss_dssp --------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CC-------------------HHHHT----T---
T ss_pred --------CchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccCC-cC-------------------ccccc----c---
Confidence 2568999999999999999988 689999999962 11 11110 0
Q ss_pred ccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCC------------------CcccHHHHHH
Q 015080 285 IAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTG------------------KGRSVKEFVE 346 (413)
Q Consensus 285 ~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~------------------~~~s~~e~~~ 346 (413)
.+ .........+|+|.++++++.......++++.+.+| ..++..++.+
T Consensus 204 ~~--------------~~~~~~~~pe~vA~~v~~L~s~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 269 (604)
T 2et6_A 204 MP--------------PPMLEKLGPEKVAPLVLYLSSAENELTGQFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAK 269 (604)
T ss_dssp SC--------------HHHHTTCSHHHHHHHHHHHTSSSCCCCSCEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHH
T ss_pred CC--------------hhhhccCCHHHHHHHHHHHhCCcccCCCCEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHH
Confidence 00 000123578999999999887553334567777554 2356678887
Q ss_pred HHHHHcC
Q 015080 347 ACKKATS 353 (413)
Q Consensus 347 ~i~~~~g 353 (413)
...+...
T Consensus 270 ~~~~~~~ 276 (604)
T 2et6_A 270 RFSEILD 276 (604)
T ss_dssp HHHHHTC
T ss_pred HHHHhhc
Confidence 7776654
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-20 Score=175.50 Aligned_cols=238 Identities=13% Similarity=0.032 Sum_probs=130.2
Q ss_pred CCCCceEEEEEcC--CChHHHHHHHHHHHCCCEEEEEecCC--------CCCchhh-----------hhhhhhcCCCC--
Q 015080 66 HEEGVTHVLVTGG--AGYIGSHAALRLLKDSYRVTIVDNLS--------RGNIGAV-----------KVLQELFPEPG-- 122 (413)
Q Consensus 66 ~~~~~k~vlITGa--sG~IG~~la~~L~~~G~~V~~~~r~~--------~~~~~~~-----------~~~~~~~~~~~-- 122 (413)
.+.+ |++||||| +|+||.+++++|+++|++|++++|+. ++.+... +..+++...+.
T Consensus 6 ~l~~-k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (319)
T 2ptg_A 6 DLRG-KTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDL 84 (319)
T ss_dssp CCTT-CEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------
T ss_pred ccCC-CEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccc
Confidence 3456 89999999 89999999999999999999998631 1111100 01111111110
Q ss_pred -ceEEEEcc------------CCC--------HHHHHHHhhc-----CCCcEEEEcCcccC--ccC----CcCChHHHHH
Q 015080 123 -RLQFIYAD------------LGD--------AKAVNKFFSE-----NAFDAVMHFAAVAY--VGE----STLDPLKYYH 170 (413)
Q Consensus 123 -~~~~~~~D------------l~d--------~~~~~~~~~~-----~~~dvvi~~Ag~~~--~~~----~~~~~~~~~~ 170 (413)
...++.+| ++| ++++++++++ .++|+||||||+.. ... ..++.+..++
T Consensus 85 ~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~ 164 (319)
T 2ptg_A 85 VFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVS 164 (319)
T ss_dssp CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHH
T ss_pred cccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHh
Confidence 13444444 332 2345544433 58999999999752 111 2233456788
Q ss_pred HHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHHhh----CCCcEE
Q 015080 171 NITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQAPI-NPYGKAKKMAEDIILDFSKN----SDMAVM 243 (413)
Q Consensus 171 ~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~-~~Y~~sK~~~e~~~~~~~~~----~gi~~~ 243 (413)
+|+.++.++++++... ..++||++||...+... ... ..|+.||++.+.+++.++.+ +||+++
T Consensus 165 vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~-----------~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn 233 (319)
T 2ptg_A 165 SSSYSFVSLLQHFLPLMKEGGSALALSYIASEKVI-----------PGYGGGMSSAKAALESDCRTLAFEAGRARAVRVN 233 (319)
T ss_dssp HHTHHHHHHHHHHGGGEEEEEEEEEEEECC-----------------------------THHHHHHHHHHHHHHHCCEEE
T ss_pred HhhHHHHHHHHHHHHHHhcCceEEEEecccccccc-----------CccchhhHHHHHHHHHHHHHHHHHhccccCeeEE
Confidence 9999999988888754 12799999997765321 123 57999999999999998876 489999
Q ss_pred EEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc
Q 015080 244 ILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA 323 (413)
Q Consensus 244 ~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 323 (413)
+|+||.|..+..... ..... . .+......... .......+...+|+|+++++++...
T Consensus 234 ~v~PG~v~T~~~~~~-~~~~~-~-----~~~~~~~~~~~----------------~~~p~~r~~~peevA~~v~~L~s~~ 290 (319)
T 2ptg_A 234 CISAGPLKSRAASAI-GKAGD-K-----TFIDLAIDYSE----------------ANAPLQKELESDDVGRAALFLLSPL 290 (319)
T ss_dssp EEEECCCC------------------------------------------------------CCCHHHHHHHHHHHTSGG
T ss_pred EEeeCCccChhhhhc-ccccc-h-----hhHHHHHHHHh----------------ccCCCCCCCCHHHHHHHHHHHhCcc
Confidence 999999987642100 00000 0 00000000000 0011124678999999999998753
Q ss_pred -CCCCccEEEecCCCc
Q 015080 324 -QPKKVGIYNVGTGKG 338 (413)
Q Consensus 324 -~~~~~~~yni~~~~~ 338 (413)
....++++.+.+|..
T Consensus 291 ~~~itG~~i~vdGG~~ 306 (319)
T 2ptg_A 291 ARAVTGATLYVDNGLH 306 (319)
T ss_dssp GTTCCSCEEEESTTCT
T ss_pred cCCccCCEEEECCCce
Confidence 223457899977754
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-20 Score=174.67 Aligned_cols=235 Identities=14% Similarity=0.023 Sum_probs=147.5
Q ss_pred CCCceEEEEEcC--CChHHHHHHHHHHHCCCEEEEEecCCC--------CCchhhhhhhhhcCCCC---ceEEEEcc---
Q 015080 67 EEGVTHVLVTGG--AGYIGSHAALRLLKDSYRVTIVDNLSR--------GNIGAVKVLQELFPEPG---RLQFIYAD--- 130 (413)
Q Consensus 67 ~~~~k~vlITGa--sG~IG~~la~~L~~~G~~V~~~~r~~~--------~~~~~~~~~~~~~~~~~---~~~~~~~D--- 130 (413)
+.+ |++||||| +|+||++++++|+++|++|++++|+.. ..... +.+.++. .+. .+.++.+|
T Consensus 7 l~g-k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~d~~~ 83 (315)
T 2o2s_A 7 LRG-QTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRL-DEDRKLP-DGSLIEFAGVYPLDAAF 83 (315)
T ss_dssp CTT-CEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTT-HHHHBCT-TSCBCCCSCEEECCTTC
T ss_pred CCC-CEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhh-hhhhhhh-ccccccccccccccccc
Confidence 456 89999999 899999999999999999999886420 00011 1112211 111 12444444
Q ss_pred ---------CCC--------HHHHHHHhhc-----CCCcEEEEcCcccC--ccC----CcCChHHHHHHHHHHHHHHHHH
Q 015080 131 ---------LGD--------AKAVNKFFSE-----NAFDAVMHFAAVAY--VGE----STLDPLKYYHNITSNTLVVLES 182 (413)
Q Consensus 131 ---------l~d--------~~~~~~~~~~-----~~~dvvi~~Ag~~~--~~~----~~~~~~~~~~~n~~~~~~ll~~ 182 (413)
++| ++++++++++ .++|+||||||+.. ... ..++.+..+++|+.++.+++++
T Consensus 84 ~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~ 163 (315)
T 2o2s_A 84 DKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQH 163 (315)
T ss_dssp SSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred cccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHH
Confidence 332 3455555443 57999999999752 111 2233456788999999998888
Q ss_pred HHHc--CCCEEEEeccceecCCCCCCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHHhh----CCCcEEEEeecceecCCC
Q 015080 183 MARH--GVDTLIYSSTCATYGEPEKMPITEETPQAPI-NPYGKAKKMAEDIILDFSKN----SDMAVMILRYFNVIGSDP 255 (413)
Q Consensus 183 ~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~-~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~G~~~ 255 (413)
+... ..++||++||...+.... .. ..|+.||++.+.+++.++.+ +|+++++|+||.|..+..
T Consensus 164 ~~~~m~~~g~Iv~isS~~~~~~~~-----------~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~ 232 (315)
T 2o2s_A 164 FGPIMNEGGSAVTLSYLAAERVVP-----------GYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAA 232 (315)
T ss_dssp HSTTEEEEEEEEEEEEGGGTSCCT-----------TCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCCHHH
T ss_pred HHHHHhcCCEEEEEecccccccCC-----------CccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccchhh
Confidence 8653 126999999977653221 13 47999999999999998876 589999999999876421
Q ss_pred CCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEec
Q 015080 256 EGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVG 334 (413)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~ 334 (413)
.. ...... ..+............+ ...+...+|+|+++++++.... ...++++.+.
T Consensus 233 ~~-~~~~~~------~~~~~~~~~~~~~~~p----------------~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vd 289 (315)
T 2o2s_A 233 SA-IGKSGE------KSFIDYAIDYSYNNAP----------------LRRDLHSDDVGGAALFLLSPLARAVSGVTLYVD 289 (315)
T ss_dssp HH-TTCSSS------SCHHHHHHHHHHHHSS----------------SCCCCCHHHHHHHHHHHTSGGGTTCCSCEEEES
T ss_pred hh-cccccc------chhHHHHHHHHhccCC----------------CCCCCCHHHHHHHHHHHhCchhccCcCCEEEEC
Confidence 00 000000 0111111111111111 1135688999999999887432 2345788887
Q ss_pred CCCc
Q 015080 335 TGKG 338 (413)
Q Consensus 335 ~~~~ 338 (413)
+|..
T Consensus 290 GG~~ 293 (315)
T 2o2s_A 290 NGLH 293 (315)
T ss_dssp TTGG
T ss_pred CCee
Confidence 7643
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.8e-19 Score=167.12 Aligned_cols=172 Identities=12% Similarity=-0.018 Sum_probs=124.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHH-CCCEEEEEecCCCCCchh------------hhhhhhhcCCCCceEEEEccCCCHHHH
Q 015080 71 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNIGA------------VKVLQELFPEPGRLQFIYADLGDAKAV 137 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~-~G~~V~~~~r~~~~~~~~------------~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 137 (413)
|++|||||+++||.++++.|++ .|++|+++++......+. .+.+.+ .+..+..+.+|++|++++
T Consensus 48 KvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~---~G~~a~~i~~Dvtd~~~v 124 (405)
T 3zu3_A 48 KRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQ---KGLYAKSINGDAFSDEIK 124 (405)
T ss_dssp SEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHH---TTCCEEEEESCTTSHHHH
T ss_pred CEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHh---cCCceEEEECCCCCHHHH
Confidence 9999999999999999999999 999999998765443221 222222 245788999999999999
Q ss_pred HHHhhc-----CCCcEEEEcCcccC-------------ccC-------------------------CcCChHHHHHHHHH
Q 015080 138 NKFFSE-----NAFDAVMHFAAVAY-------------VGE-------------------------STLDPLKYYHNITS 174 (413)
Q Consensus 138 ~~~~~~-----~~~dvvi~~Ag~~~-------------~~~-------------------------~~~~~~~~~~~n~~ 174 (413)
+++++. +++|+||||||+.. ... ..++.+..+++|..
T Consensus 125 ~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~~ 204 (405)
T 3zu3_A 125 QLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGG 204 (405)
T ss_dssp HHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhch
Confidence 888765 68999999999741 111 11223345666666
Q ss_pred HHH-HHHHHHHHc----CCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---C-CCcEEEE
Q 015080 175 NTL-VVLESMARH----GVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---S-DMAVMIL 245 (413)
Q Consensus 175 ~~~-~ll~~~~~~----~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~-gi~~~~l 245 (413)
+.. .++.++... +.++||++||....-..+ .....+|++||.+.+.+++.++.+ . |++++++
T Consensus 205 ~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~p---------~~~~~aY~AaKaal~~ltrsLA~Ela~~~GIRVNaV 275 (405)
T 3zu3_A 205 EDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITHD---------IYWNGSIGAAKKDLDQKVLAIRESLAAHGGGDARVS 275 (405)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGTT---------TTTTSHHHHHHHHHHHHHHHHHHHHHTTTSCEEEEE
T ss_pred hHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcCC---------CccchHHHHHHHHHHHHHHHHHHHhCcccCeEEEEE
Confidence 554 445544322 236999999976532111 111278999999999999999988 6 9999999
Q ss_pred eecceecCC
Q 015080 246 RYFNVIGSD 254 (413)
Q Consensus 246 rp~~v~G~~ 254 (413)
.||.|-.+.
T Consensus 276 aPG~i~T~~ 284 (405)
T 3zu3_A 276 VLKAVVSQA 284 (405)
T ss_dssp ECCCCCCHH
T ss_pred EeCCCcCch
Confidence 999987653
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-19 Score=170.68 Aligned_cols=172 Identities=13% Similarity=-0.045 Sum_probs=123.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHH-CCCEEEEEecCCCCCchh------------hhhhhhhcCCCCceEEEEccCCCHHHH
Q 015080 71 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNIGA------------VKVLQELFPEPGRLQFIYADLGDAKAV 137 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~-~G~~V~~~~r~~~~~~~~------------~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 137 (413)
|++|||||+++||.++++.|++ .|++|++++|.....++. .+.+.+ .+..+..+.+|++|++++
T Consensus 62 KvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~---~G~~a~~i~~Dvtd~~~v 138 (422)
T 3s8m_A 62 KKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKA---AGLYSKSINGDAFSDAAR 138 (422)
T ss_dssp SEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHH---TTCCEEEEESCTTSHHHH
T ss_pred CEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHh---cCCcEEEEEecCCCHHHH
Confidence 9999999999999999999999 999999999866544331 123332 245788999999999998
Q ss_pred HHHhhc------CCCcEEEEcCccc-------------CccC-------------------------CcCChHHHHHHHH
Q 015080 138 NKFFSE------NAFDAVMHFAAVA-------------YVGE-------------------------STLDPLKYYHNIT 173 (413)
Q Consensus 138 ~~~~~~------~~~dvvi~~Ag~~-------------~~~~-------------------------~~~~~~~~~~~n~ 173 (413)
+++++. +++|+||||||+. .... ..++.+..+++|.
T Consensus 139 ~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~ 218 (422)
T 3s8m_A 139 AQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMG 218 (422)
T ss_dssp HHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhc
Confidence 877754 4799999999872 1111 1112223444554
Q ss_pred HHHH-HHHHHHHHc----CCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEE
Q 015080 174 SNTL-VVLESMARH----GVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMIL 245 (413)
Q Consensus 174 ~~~~-~ll~~~~~~----~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~l 245 (413)
.+.. .++.++... +.++||++||....-..+ .....+|++||++.+.+++.++.| .||++++|
T Consensus 219 ~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~p---------~~~~~aY~ASKaAl~~lTrsLA~Ela~~GIRVNaV 289 (422)
T 3s8m_A 219 GQDWELWIDALEGAGVLADGARSVAFSYIGTEITWP---------IYWHGALGKAKVDLDRTAQRLNARLAKHGGGANVA 289 (422)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGHH---------HHTSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred hhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccCC---------CccchHHHHHHHHHHHHHHHHHHHhCccCEEEEEE
Confidence 4443 455555432 236999999976432111 001268999999999999999988 69999999
Q ss_pred eecceecCC
Q 015080 246 RYFNVIGSD 254 (413)
Q Consensus 246 rp~~v~G~~ 254 (413)
.||.|-.+.
T Consensus 290 aPG~i~T~~ 298 (422)
T 3s8m_A 290 VLKSVVTQA 298 (422)
T ss_dssp EECCCCCTT
T ss_pred EcCCCcChh
Confidence 999998764
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-17 Score=159.38 Aligned_cols=174 Identities=12% Similarity=-0.029 Sum_probs=121.3
Q ss_pred eEEEEEcCCChHHHH--HHHHHHHCCCEEEEEecCCCCCchh--------hhhhhh-hcCCCCceEEEEccCCCHHHHHH
Q 015080 71 THVLVTGGAGYIGSH--AALRLLKDSYRVTIVDNLSRGNIGA--------VKVLQE-LFPEPGRLQFIYADLGDAKAVNK 139 (413)
Q Consensus 71 k~vlITGasG~IG~~--la~~L~~~G~~V~~~~r~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~ 139 (413)
|++|||||+++||.+ +++.|++.|++|++++|........ .+.+.+ ....+..+.++.+|++|.+++++
T Consensus 61 K~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~v~~ 140 (418)
T 4eue_A 61 KKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNETKDK 140 (418)
T ss_dssp SEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHHHHH
Confidence 999999999999999 9999999999999999865543211 111111 11124578899999999999988
Q ss_pred Hhhc-----CCCcEEEEcCccc-------------CccC-------------------------CcCChHHHHHHHHHHH
Q 015080 140 FFSE-----NAFDAVMHFAAVA-------------YVGE-------------------------STLDPLKYYHNITSNT 176 (413)
Q Consensus 140 ~~~~-----~~~dvvi~~Ag~~-------------~~~~-------------------------~~~~~~~~~~~n~~~~ 176 (413)
+++. +++|+||||||.. .... ..++.+..+++|..+.
T Consensus 141 ~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn~~~~ 220 (418)
T 4eue_A 141 VIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVMGGED 220 (418)
T ss_dssp HHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhhHHH
Confidence 7765 5799999999974 1111 1111223444554433
Q ss_pred H-HHHHHHHHc----CCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh----CCCcEEEEee
Q 015080 177 L-VVLESMARH----GVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN----SDMAVMILRY 247 (413)
Q Consensus 177 ~-~ll~~~~~~----~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp 247 (413)
. .++.++... +.+++|++||....-.. |......|++||++.+.+++.++.+ .|++++++.|
T Consensus 221 ~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~---------p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~GIrVN~V~P 291 (418)
T 4eue_A 221 WQEWCEELLYEDCFSDKATTIAYSYIGSPRTY---------KIYREGTIGIAKKDLEDKAKLINEKLNRVIGGRAFVSVN 291 (418)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEECCCCGGGT---------TTTTTSHHHHHHHHHHHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred HHHHHHHHHHHhhhcCCcEEEEEeCchhcCCC---------CccccHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEEC
Confidence 3 445554432 24689999996643211 1111278999999999999999887 4899999999
Q ss_pred cceecC
Q 015080 248 FNVIGS 253 (413)
Q Consensus 248 ~~v~G~ 253 (413)
|.|-.+
T Consensus 292 G~v~T~ 297 (418)
T 4eue_A 292 KALVTK 297 (418)
T ss_dssp CCCCCH
T ss_pred CcCcCh
Confidence 998875
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7e-19 Score=166.85 Aligned_cols=172 Identities=17% Similarity=0.139 Sum_probs=125.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-------EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
|+|+||||+||||++++..|++.|+ +|+++|+... ..........+.. ..+.++ .|+.+.+++.+++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~-~~~~~g~~~dl~~--~~~~~~-~di~~~~~~~~a~-- 78 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQA-MKALEGVVMELED--CAFPLL-AGLEATDDPKVAF-- 78 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGG-HHHHHHHHHHHHT--TTCTTE-EEEEEESCHHHHT--
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCc-hhhccchhhhhhc--cccccc-CCeEeccChHHHh--
Confidence 7899999999999999999999986 8999886421 0111111111111 111223 5776666667777
Q ss_pred CCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-CC-EEEEeccce-ecCCCCCCCCC-CCC-CCCCCC
Q 015080 144 NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VD-TLIYSSTCA-TYGEPEKMPIT-EET-PQAPIN 218 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~-~iV~~SS~~-~~~~~~~~~~~-e~~-~~~~~~ 218 (413)
.++|+|||+||....+ ..++...++.|+.+++++++++++.+ .+ +++++|+.. +.. ++. |.. ..+|.+
T Consensus 79 ~~~D~Vih~Ag~~~~~--~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~-----~~~~~~~~~~~p~~ 151 (327)
T 1y7t_A 79 KDADYALLVGAAPRKA--GMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNA-----LIAYKNAPGLNPRN 151 (327)
T ss_dssp TTCSEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-----HHHHHTCTTSCGGG
T ss_pred CCCCEEEECCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhH-----HHHHHHcCCCChhh
Confidence 6899999999976432 35678899999999999999999985 54 788887743 110 111 112 245667
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCC
Q 015080 219 PYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDP 255 (413)
Q Consensus 219 ~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~ 255 (413)
.|+.||...|.+...+++.+|++++++||++||||+.
T Consensus 152 ~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~ 188 (327)
T 1y7t_A 152 FTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHS 188 (327)
T ss_dssp EEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSS
T ss_pred eeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCC
Confidence 8999999999999999888999999999999999864
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=175.85 Aligned_cols=169 Identities=19% Similarity=0.227 Sum_probs=134.4
Q ss_pred eEEEEEcCCChHHHHHHHHHH-HCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----C
Q 015080 71 THVLVTGGAGYIGSHAALRLL-KDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~-~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~ 144 (413)
+++|||||+|+||.++++.|+ ++|+ +|++++|+....+...+.++++...+.++.++.||++|.+++++++++ .
T Consensus 531 ~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~~~~ 610 (795)
T 3slk_A 531 GTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIPDEH 610 (795)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTS
T ss_pred cceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHhC
Confidence 899999999999999999999 7999 589998875555555555555544567899999999999999999876 3
Q ss_pred CCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChh
Q 015080 145 AFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPY 220 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y 220 (413)
++|+||||||+...... .++.+..+++|+.|+.++.+++.. .. +||++||.+.+-...+ ...|
T Consensus 611 ~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~-~l-~iV~~SS~ag~~g~~g-----------~~~Y 677 (795)
T 3slk_A 611 PLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDP-DV-ALVLFSSVSGVLGSGG-----------QGNY 677 (795)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCT-TS-EEEEEEETHHHHTCSS-----------CHHH
T ss_pred CCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhh-CC-EEEEEccHHhcCCCCC-----------CHHH
Confidence 68999999998754332 233445677899999999998833 34 9999999776533222 6789
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeecceecC
Q 015080 221 GKAKKMAEDIILDFSKNSDMAVMILRYFNVIGS 253 (413)
Q Consensus 221 ~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~ 253 (413)
+++|...+.+.+.+.. .|+++++|.||.+-.+
T Consensus 678 aAaka~~~alA~~~~~-~Gi~v~sI~pG~v~t~ 709 (795)
T 3slk_A 678 AAANSFLDALAQQRQS-RGLPTRSLAWGPWAEH 709 (795)
T ss_dssp HHHHHHHHHHHHHHHH-TTCCEEEEEECCCSCC
T ss_pred HHHHHHHHHHHHHHHH-cCCeEEEEECCeECcc
Confidence 9999988888887765 6999999999988754
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-17 Score=178.82 Aligned_cols=171 Identities=16% Similarity=0.116 Sum_probs=125.6
Q ss_pred CCCceEEEEEcCCCh-HHHHHHHHHHHCCCEEEEEec-CCCCCchhhhhh-hhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 67 EEGVTHVLVTGGAGY-IGSHAALRLLKDSYRVTIVDN-LSRGNIGAVKVL-QELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~-IG~~la~~L~~~G~~V~~~~r-~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
+.+ |++|||||+|+ ||.++|+.|+++|++|+++++ +.....+..+.+ .++...+..+.++.||++|.++++++++.
T Consensus 650 L~g-KvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~ 728 (1878)
T 2uv9_A 650 FQG-KHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNY 728 (1878)
T ss_dssp CTT-CEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHH
Confidence 446 89999999999 999999999999999999863 222222222233 33333346789999999999999988763
Q ss_pred ---C------CCcEEEEcCcccCcc-CCc------CChHHHHHHHHHHHHHHHHHHH------HcCCCEEEEeccceecC
Q 015080 144 ---N------AFDAVMHFAAVAYVG-EST------LDPLKYYHNITSNTLVVLESMA------RHGVDTLIYSSTCATYG 201 (413)
Q Consensus 144 ---~------~~dvvi~~Ag~~~~~-~~~------~~~~~~~~~n~~~~~~ll~~~~------~~~~~~iV~~SS~~~~~ 201 (413)
. ++|+||||||+.... ... +..+..+++|+.++.+++..++ +.+.++||++||.+.+.
T Consensus 729 i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~ 808 (1878)
T 2uv9_A 729 IYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTF 808 (1878)
T ss_dssp HHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSS
T ss_pred HHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhcc
Confidence 2 699999999986543 222 2335678899999887776532 22346999999976532
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeeccee
Q 015080 202 EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVI 251 (413)
Q Consensus 202 ~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~ 251 (413)
. ....|+.||++.+.++..+..+ .+|++++|.||.+-
T Consensus 809 g-------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~ 848 (1878)
T 2uv9_A 809 G-------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTR 848 (1878)
T ss_dssp S-------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBC
T ss_pred C-------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccee
Confidence 1 1467999999999998766544 23999999999987
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-17 Score=180.94 Aligned_cols=172 Identities=16% Similarity=0.092 Sum_probs=129.0
Q ss_pred CCCceEEEEEcCCCh-HHHHHHHHHHHCCCEEEEEe-cCCCCCchhhhhhh-hhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 67 EEGVTHVLVTGGAGY-IGSHAALRLLKDSYRVTIVD-NLSRGNIGAVKVLQ-ELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~-IG~~la~~L~~~G~~V~~~~-r~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
+.+ |++|||||+|+ ||.++++.|++.|++|++++ |+....+++.+.+. +....+..+.++.+|++|.++++++++.
T Consensus 673 l~g-KvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~ 751 (1887)
T 2uv8_A 673 FKD-KYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF 751 (1887)
T ss_dssp CTT-CEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHH
Confidence 446 89999999998 99999999999999999984 43322222333332 2222345789999999999999988753
Q ss_pred ---C--------CCcEEEEcCcccCcc-CCc------CChHHHHHHHHHHHHHHHHHHHHc------CCCEEEEecccee
Q 015080 144 ---N--------AFDAVMHFAAVAYVG-EST------LDPLKYYHNITSNTLVVLESMARH------GVDTLIYSSTCAT 199 (413)
Q Consensus 144 ---~--------~~dvvi~~Ag~~~~~-~~~------~~~~~~~~~n~~~~~~ll~~~~~~------~~~~iV~~SS~~~ 199 (413)
. ++|+||||||+.... ... +..+..+++|+.++..++..++.. +.++||++||...
T Consensus 752 i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag 831 (1887)
T 2uv8_A 752 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHG 831 (1887)
T ss_dssp HHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTT
T ss_pred HHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHh
Confidence 2 699999999986543 222 234567889999998888877432 2369999999664
Q ss_pred cCCCCCCCCCCCCCCCCCChhHHHHHHHHHH-HHHHHhhCC--CcEEEEeecceec
Q 015080 200 YGEPEKMPITEETPQAPINPYGKAKKMAEDI-ILDFSKNSD--MAVMILRYFNVIG 252 (413)
Q Consensus 200 ~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~-~~~~~~~~g--i~~~~lrp~~v~G 252 (413)
+.. ....|+.||++.+.+ .+.++.+.+ |++++|+||.|-|
T Consensus 832 ~~g-------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~t 874 (1887)
T 2uv8_A 832 TFG-------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRG 874 (1887)
T ss_dssp CSS-------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEEC
T ss_pred ccC-------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEeccccc
Confidence 421 246899999999998 777777643 9999999999985
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.2e-18 Score=179.22 Aligned_cols=172 Identities=16% Similarity=0.090 Sum_probs=127.0
Q ss_pred CCCceEEEEEcCCCh-HHHHHHHHHHHCCCEEEEE-ecCCCCCchhhhhhhhh-cCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 67 EEGVTHVLVTGGAGY-IGSHAALRLLKDSYRVTIV-DNLSRGNIGAVKVLQEL-FPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~-IG~~la~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
+.+ |++|||||+|+ ||.++|+.|+++|++|+++ +|+....++..+.+.+. ...+.++.++.+|++|.++++++++.
T Consensus 474 L~G-KvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~ 552 (1688)
T 2pff_A 474 FKD-KYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF 552 (1688)
T ss_dssp CCS-CCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHH
T ss_pred cCC-CEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 456 89999999998 9999999999999999988 45444444443433222 22245788999999999999888753
Q ss_pred ---C--------CCcEEEEcCcccCcc-CCc------CChHHHHHHHHHHHHHHHHHHHH------cCCCEEEEecccee
Q 015080 144 ---N--------AFDAVMHFAAVAYVG-EST------LDPLKYYHNITSNTLVVLESMAR------HGVDTLIYSSTCAT 199 (413)
Q Consensus 144 ---~--------~~dvvi~~Ag~~~~~-~~~------~~~~~~~~~n~~~~~~ll~~~~~------~~~~~iV~~SS~~~ 199 (413)
. ++|+||||||+.... ... +..+..+++|+.++..++.+++. .+.++||++||.+.
T Consensus 553 I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG 632 (1688)
T 2pff_A 553 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHG 632 (1688)
T ss_dssp HHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTT
T ss_pred HHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHh
Confidence 2 699999999986543 222 22355788999998888877632 22369999999654
Q ss_pred cCCCCCCCCCCCCCCCCCChhHHHHHHHHHH-HHHHHhhCC--CcEEEEeecceec
Q 015080 200 YGEPEKMPITEETPQAPINPYGKAKKMAEDI-ILDFSKNSD--MAVMILRYFNVIG 252 (413)
Q Consensus 200 ~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~-~~~~~~~~g--i~~~~lrp~~v~G 252 (413)
... ....|+.||++.+.+ .+.++.+.+ |++++|.||.|-|
T Consensus 633 ~~G-------------g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~T 675 (1688)
T 2pff_A 633 TFG-------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRG 675 (1688)
T ss_dssp TSS-------------CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCC
T ss_pred ccC-------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcC
Confidence 321 246899999999998 555555533 8999999999885
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=168.51 Aligned_cols=171 Identities=12% Similarity=0.056 Sum_probs=126.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCE-EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~~ 145 (413)
|++|||||+|+||.++++.|+++|++ |++++|+..+.+...+.++++...+.++.++.||++|.+++++++++ .+
T Consensus 1885 k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~~g~ 1964 (2512)
T 2vz8_A 1885 KSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQLGP 1964 (2512)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHHHSC
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999997 77888766555444444444433346788999999999999887764 57
Q ss_pred CcEEEEcCcccCccC----CcCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCCCCCCh
Q 015080 146 FDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQAPINP 219 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~ 219 (413)
+|+||||||+..... ..++.+..+++|+.|+.++.+++... ..++||++||.+..-... ....
T Consensus 1965 id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~~-----------g~~~ 2033 (2512)
T 2vz8_A 1965 VGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGNA-----------GQAN 2033 (2512)
T ss_dssp EEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTCT-----------TCHH
T ss_pred CcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCCC-----------CcHH
Confidence 999999999764322 23344556789999999987777654 347999999976543222 2578
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEeecceecC
Q 015080 220 YGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGS 253 (413)
Q Consensus 220 Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~ 253 (413)
|+++|++.+.+++..+. .|++...+..+.+-+.
T Consensus 2034 Y~aaKaal~~l~~~rr~-~Gl~~~a~~~g~~~~~ 2066 (2512)
T 2vz8_A 2034 YGFANSAMERICEKRRH-DGLPGLAVQWGAIGDV 2066 (2512)
T ss_dssp HHHHHHHHHHHHHHHHH-TTSCCCEEEECCBCTT
T ss_pred HHHHHHHHHHHHHHHHH-CCCcEEEEEccCcCCc
Confidence 99999999999998766 5899888888765443
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=159.93 Aligned_cols=174 Identities=11% Similarity=0.069 Sum_probs=119.0
Q ss_pred CCCceEEEEEcCCCh-HHHHHHHHHHHCCCEEEEEecCCCCC-ch-hhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 67 EEGVTHVLVTGGAGY-IGSHAALRLLKDSYRVTIVDNLSRGN-IG-AVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~-IG~~la~~L~~~G~~V~~~~r~~~~~-~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
+.+ |++|||||+++ ||.++|+.|++.|++|++++|+.... .+ +.+...++...+..+..+.+|++|+++++++++.
T Consensus 2134 l~g-KvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~ 2212 (3089)
T 3zen_D 2134 XXD-EVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEW 2212 (3089)
T ss_dssp CCC-CEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCC-CEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHH
Confidence 456 99999999999 99999999999999999998754331 01 2333334444456788999999999999887643
Q ss_pred ---------CCCcEEEEcCcc----cCcc-C----CcCCh----HHHHHHHHHHHHHHHHH----HHHcCCC---EEEEe
Q 015080 144 ---------NAFDAVMHFAAV----AYVG-E----STLDP----LKYYHNITSNTLVVLES----MARHGVD---TLIYS 194 (413)
Q Consensus 144 ---------~~~dvvi~~Ag~----~~~~-~----~~~~~----~~~~~~n~~~~~~ll~~----~~~~~~~---~iV~~ 194 (413)
+++|+||||||+ .... . ..++. +..+++|+.++..++.. +.+.+.+ .+|..
T Consensus 2213 i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~ 2292 (3089)
T 3zen_D 2213 VGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLP 2292 (3089)
T ss_dssp HTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred HHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEE
Confidence 469999999997 2111 0 11222 33477888886555544 4444322 22222
Q ss_pred ccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh----CCCcEEEEeecceecC
Q 015080 195 STCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN----SDMAVMILRYFNVIGS 253 (413)
Q Consensus 195 SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~G~ 253 (413)
+|. ..+. .....+|+.||++.+.+++.++.| .+++++.+.||.|-+.
T Consensus 2293 ~ss-~~g~-----------~g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT 2343 (3089)
T 3zen_D 2293 GSP-NRGM-----------FGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGT 2343 (3089)
T ss_dssp ECS-STTS-----------CSSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECS
T ss_pred CCc-cccc-----------CCCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCC
Confidence 221 1111 112457999999999999999998 3589999999998754
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-11 Score=114.99 Aligned_cols=172 Identities=12% Similarity=0.004 Sum_probs=112.4
Q ss_pred eEEEEEcCCChHHHHHHHHHH-HCCCEEEEEecCCCCCch------------hhhhhhhhcCCCCceEEEEccCCCHHHH
Q 015080 71 THVLVTGGAGYIGSHAALRLL-KDSYRVTIVDNLSRGNIG------------AVKVLQELFPEPGRLQFIYADLGDAKAV 137 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~-~~G~~V~~~~r~~~~~~~------------~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 137 (413)
|++||||||++||.+.+..|+ +.|+.|+++.+.....++ ..+.+.+. +..+..+.||+++.+++
T Consensus 51 K~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~---G~~a~~i~~Dv~d~e~i 127 (401)
T 4ggo_A 51 KNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKRE---GLYSVTIDGDAFSDEIK 127 (401)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHH---TCCEEEEESCTTSHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHc---CCCceeEeCCCCCHHHH
Confidence 999999999999999999998 679999999875544332 12233333 57899999999999999
Q ss_pred HHHhhc-----CCCcEEEEcCcccCccCC-----------------------------------cCChHHHHH-HHHHH-
Q 015080 138 NKFFSE-----NAFDAVMHFAAVAYVGES-----------------------------------TLDPLKYYH-NITSN- 175 (413)
Q Consensus 138 ~~~~~~-----~~~dvvi~~Ag~~~~~~~-----------------------------------~~~~~~~~~-~n~~~- 175 (413)
+++++. +++|+|||++|....... ....++.-. +.+++
T Consensus 128 ~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg~ 207 (401)
T 4ggo_A 128 AQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMGG 207 (401)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHhh
Confidence 988876 789999999996521000 001111111 11222
Q ss_pred -H-HHHHHHHHHcC----CCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh-CCCcEEEEeec
Q 015080 176 -T-LVVLESMARHG----VDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN-SDMAVMILRYF 248 (413)
Q Consensus 176 -~-~~ll~~~~~~~----~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~-~gi~~~~lrp~ 248 (413)
. .....++...+ ..++|.+|+...- .. .|......++.+|++.|..++.++.+ .++++.++.++
T Consensus 208 s~~s~w~~al~~a~lla~G~siva~SYiGse---~t------~P~Y~~G~mG~AKaaLEa~~r~La~eL~~~~a~v~v~~ 278 (401)
T 4ggo_A 208 EDWERWIKQLSKEGLLEEGCITLAYSYIGPE---AT------QALYRKGTIGKAKEHLEATAHRLNKENPSIRAFVSVNK 278 (401)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEECCCCG---GG------HHHHTTSHHHHHHHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred hHHHHHHHHHHhhhcccCCceEEEEeccCcc---ee------ecCCCccHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcC
Confidence 1 12333344332 3578888874321 00 01111347899999999999999988 45777777777
Q ss_pred ceecCC
Q 015080 249 NVIGSD 254 (413)
Q Consensus 249 ~v~G~~ 254 (413)
.+-...
T Consensus 279 a~vT~A 284 (401)
T 4ggo_A 279 GLVTRA 284 (401)
T ss_dssp CCCCTT
T ss_pred ccccch
Confidence 666543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-10 Score=92.14 Aligned_cols=93 Identities=26% Similarity=0.273 Sum_probs=72.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC-CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
|+|+|+|+ |++|+++++.|.+.| ++|++++|+..+ . +.+. ..++.++.+|+++.+++.+++ .++|+|
T Consensus 6 ~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~---~-~~~~-----~~~~~~~~~d~~~~~~~~~~~--~~~d~v 73 (118)
T 3ic5_A 6 WNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAA---L-AVLN-----RMGVATKQVDAKDEAGLAKAL--GGFDAV 73 (118)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHH---H-HHHH-----TTTCEEEECCTTCHHHHHHHT--TTCSEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHH---H-HHHH-----hCCCcEEEecCCCHHHHHHHH--cCCCEE
Confidence 89999999 999999999999999 899999874322 1 1221 146788999999999999998 689999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIY 193 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~ 193 (413)
||+++.. .+..+++.+.+.++.++..
T Consensus 74 i~~~~~~------------------~~~~~~~~~~~~g~~~~~~ 99 (118)
T 3ic5_A 74 ISAAPFF------------------LTPIIAKAAKAAGAHYFDL 99 (118)
T ss_dssp EECSCGG------------------GHHHHHHHHHHTTCEEECC
T ss_pred EECCCch------------------hhHHHHHHHHHhCCCEEEe
Confidence 9999632 1356788888888754443
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-11 Score=114.30 Aligned_cols=167 Identities=13% Similarity=0.095 Sum_probs=111.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-------EEEEEecC----CCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHH
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNL----SRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNK 139 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-------~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 139 (413)
++|+||||+|+||++++..|+..|. +|+++|+. ..+.+.....+.+.. ..+ ..|+....+..+
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~---~~~---~~~i~~~~~~~~ 79 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCA---FPL---LAGMTAHADPMT 79 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTT---CTT---EEEEEEESSHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhc---ccc---cCcEEEecCcHH
Confidence 7899999999999999999999885 89998764 111111111222210 011 134444445666
Q ss_pred HhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-CC-EEEEeccce-e--cCCCCCCCCCCCC-C
Q 015080 140 FFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VD-TLIYSSTCA-T--YGEPEKMPITEET-P 213 (413)
Q Consensus 140 ~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~-~iV~~SS~~-~--~~~~~~~~~~e~~-~ 213 (413)
++ .++|+|||+||.... ...+..+.+..|+.+++++++.+.+.+ .. +||++|+-. + |-. .+.. -
T Consensus 80 al--~~aD~Vi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~------~~~~~~ 149 (329)
T 1b8p_A 80 AF--KDADVALLVGARPRG--PGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIA------MKSAPS 149 (329)
T ss_dssp HT--TTCSEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH------HHTCTT
T ss_pred Hh--CCCCEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHH------HHHcCC
Confidence 67 689999999997532 234567789999999999999999984 55 899998711 1 100 0001 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecC
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGS 253 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~ 253 (413)
.++...|+.++....++...+++..|++...++..+|+|.
T Consensus 150 ~p~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~ 189 (329)
T 1b8p_A 150 LPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGN 189 (329)
T ss_dssp SCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBC
T ss_pred CCHHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEec
Confidence 1223457888888888888888888887777777778884
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.8e-10 Score=105.49 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=65.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
+.+ |+++||||+|+||+++++.|++.|++|++++|+..+.+++.+.+... .++.++.+|++|.+++.+++ ..+
T Consensus 117 l~g-k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~----~~~~~~~~D~~~~~~~~~~~--~~~ 189 (287)
T 1lu9_A 117 VKG-KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR----FKVNVTAAETADDASRAEAV--KGA 189 (287)
T ss_dssp CTT-CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH----HTCCCEEEECCSHHHHHHHT--TTC
T ss_pred CCC-CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEecCCCHHHHHHHH--HhC
Confidence 346 89999999999999999999999999999987544333333333221 24667889999999999998 568
Q ss_pred cEEEEcCccc
Q 015080 147 DAVMHFAAVA 156 (413)
Q Consensus 147 dvvi~~Ag~~ 156 (413)
|+||||||+.
T Consensus 190 DvlVn~ag~g 199 (287)
T 1lu9_A 190 HFVFTAGAIG 199 (287)
T ss_dssp SEEEECCCTT
T ss_pred CEEEECCCcc
Confidence 9999999864
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.95 E-value=6.4e-09 Score=97.89 Aligned_cols=115 Identities=12% Similarity=0.135 Sum_probs=82.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|+||||+|++|+.++..|++.| .+|+++|+... ......+.+... ...+. . +.+.+++.+++ .++|+
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~-~~~v~---~-~~~t~d~~~al--~gaDv 79 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDT-GAVVR---G-FLGQQQLEAAL--TGMDL 79 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCS-SCEEE---E-EESHHHHHHHH--TTCSE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccc-cceEE---E-EeCCCCHHHHc--CCCCE
Confidence 789999999999999999999998 78999986443 212222222111 11222 1 33456677777 78999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
|||+||....+ .....+.+..|+.+++++++.+.+.+...+|+++|
T Consensus 80 Vi~~ag~~~~~--g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S 125 (326)
T 1smk_A 80 IIVPAGVPRKP--GMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS 125 (326)
T ss_dssp EEECCCCCCCS--SCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred EEEcCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence 99999964321 22345678999999999999999988777777776
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=8.3e-09 Score=96.61 Aligned_cols=170 Identities=14% Similarity=0.126 Sum_probs=102.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEec--CCCCCchhhhhhhhhcCC-CCceEEEEccCCCHHHHHHHhhcCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDN--LSRGNIGAVKVLQELFPE-PGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r--~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
|+|+||||+|+||++++..|+..|. ++.++|+ ...+.+.....+.+.... +..+.+...| +++.+++ .+
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~~al--~g 74 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DENLRII--DE 74 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGGGG--TT
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----cchHHHh--CC
Confidence 4799999999999999999999875 6888876 221111111122221111 1223333222 1133445 68
Q ss_pred CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHH-HH
Q 015080 146 FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGK-AK 224 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~-sK 224 (413)
+|+|||+||+... ........+..|+.+++++++++++.+ ..+|+++|--+.-... -.......++...++. +.
T Consensus 75 aD~Vi~~Ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~~~t~--~~~k~~~~p~~rviG~gt~ 149 (313)
T 1hye_A 75 SDVVIITSGVPRK--EGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVDVMTY--KALVDSKFERNQVFGLGTH 149 (313)
T ss_dssp CSEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHHHHHH--HHHHHHCCCTTSEEECTTH
T ss_pred CCEEEECCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHHHHHH--HHHHhhCcChhcEEEeCcc
Confidence 9999999997532 233566789999999999999999998 7777777722110000 0000011233455666 66
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeecceec
Q 015080 225 KMAEDIILDFSKNSDMAVMILRYFNVIG 252 (413)
Q Consensus 225 ~~~e~~~~~~~~~~gi~~~~lrp~~v~G 252 (413)
....++...+++..|++...++. .++|
T Consensus 150 LD~~r~~~~la~~lgv~~~~v~~-~v~G 176 (313)
T 1hye_A 150 LDSLRFKVAIAKFFGVHIDEVRT-RIIG 176 (313)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEC-CEEE
T ss_pred HHHHHHHHHHHHHhCcCHHHeEE-EEee
Confidence 66666666666666776555553 5666
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-08 Score=98.97 Aligned_cols=105 Identities=16% Similarity=0.231 Sum_probs=76.4
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCC---CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDS---YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
|++|+|+|| |+||+++++.|++.| .+|++++|+..+.++..+.+.... +.++..+.+|++|.+++.+++++.++
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~--~~~~~~~~~D~~d~~~l~~~l~~~~~ 77 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG--YGEIDITTVDADSIEELVALINEVKP 77 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT--CCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc--CCceEEEEecCCCHHHHHHHHHhhCC
Confidence 689999998 999999999999998 389999876544443433333211 13688999999999999999976569
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
|+|||||+... ...+++++.+.++ +++-+++
T Consensus 78 DvVin~ag~~~------------------~~~v~~a~l~~g~-~vvD~a~ 108 (405)
T 4ina_A 78 QIVLNIALPYQ------------------DLTIMEACLRTGV-PYLDTAN 108 (405)
T ss_dssp SEEEECSCGGG------------------HHHHHHHHHHHTC-CEEESSC
T ss_pred CEEEECCCccc------------------ChHHHHHHHHhCC-CEEEecC
Confidence 99999998421 1346677777776 4444433
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.2e-08 Score=93.23 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=78.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEec--CCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDN--LSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
|+|+||||+|++|++++..|+..|. +++++|+ ...+.+.....+.+.......+.+.. | + .+++ .++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~----~~a~--~~a 71 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--G----YEDT--AGS 71 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--C----GGGG--TTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--C----HHHh--CCC
Confidence 4799999999999999999999876 6888876 32111111222222211112334333 2 2 2234 689
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
|+|||+||.... ......+.+..|+.+++++++++.+.+...+|+++|
T Consensus 72 DvVi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~S 119 (303)
T 1o6z_A 72 DVVVITAGIPRQ--PGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (303)
T ss_dssp SEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred CEEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 999999997532 223456789999999999999999998777777777
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.1e-08 Score=88.31 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=58.4
Q ss_pred CCCceEEEEEcC----------------CChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEcc
Q 015080 67 EEGVTHVLVTGG----------------AGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD 130 (413)
Q Consensus 67 ~~~~k~vlITGa----------------sG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D 130 (413)
+.+ |+|||||| ||+||.++|+.|+++|++|+++++... .. . +.++. .+|
T Consensus 6 l~g-k~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~----------~-~~g~~--~~d 70 (226)
T 1u7z_A 6 LKH-LNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LP----------T-PPFVK--RVD 70 (226)
T ss_dssp TTT-CEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CC----------C-CTTEE--EEE
T ss_pred CCC-CEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-cc----------c-CCCCe--EEc
Confidence 457 99999999 699999999999999999999886441 11 0 12333 478
Q ss_pred CCCHHHHHHHhhc--CCCcEEEEcCcccCc
Q 015080 131 LGDAKAVNKFFSE--NAFDAVMHFAAVAYV 158 (413)
Q Consensus 131 l~d~~~~~~~~~~--~~~dvvi~~Ag~~~~ 158 (413)
+++.+++.+.+.+ .++|++|||||+..+
T Consensus 71 v~~~~~~~~~v~~~~~~~Dili~~Aav~d~ 100 (226)
T 1u7z_A 71 VMTALEMEAAVNASVQQQNIFIGCAAVADY 100 (226)
T ss_dssp CCSHHHHHHHHHHHGGGCSEEEECCBCCSE
T ss_pred cCcHHHHHHHHHHhcCCCCEEEECCcccCC
Confidence 8888776655433 579999999998643
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.68 E-value=7e-08 Score=85.17 Aligned_cols=78 Identities=21% Similarity=0.304 Sum_probs=56.5
Q ss_pred CceEEEEEcC----------------CChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCC
Q 015080 69 GVTHVLVTGG----------------AGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132 (413)
Q Consensus 69 ~~k~vlITGa----------------sG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 132 (413)
| |+|||||| ||++|.++|+.|+++|++|++++|...-.. ..+.++.. .|+.
T Consensus 3 g-k~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~----------~~~~~~~~--~~v~ 69 (232)
T 2gk4_A 3 A-MKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKP----------EPHPNLSI--REIT 69 (232)
T ss_dssp C-CEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCC----------CCCTTEEE--EECC
T ss_pred C-CEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccc----------cCCCCeEE--EEHh
Confidence 5 89999999 999999999999999999999987542111 00134544 4555
Q ss_pred CHHHHHHHhhc--CCCcEEEEcCcccCcc
Q 015080 133 DAKAVNKFFSE--NAFDAVMHFAAVAYVG 159 (413)
Q Consensus 133 d~~~~~~~~~~--~~~dvvi~~Ag~~~~~ 159 (413)
..+++.+.+.. .++|++|||||+..+.
T Consensus 70 s~~em~~~v~~~~~~~Dili~aAAvsD~~ 98 (232)
T 2gk4_A 70 NTKDLLIEMQERVQDYQVLIHSMAVSDYT 98 (232)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECSBCCSEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCcccccc
Confidence 66555444433 5799999999986543
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-07 Score=77.80 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=69.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHH-hhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKF-FSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~dvv 149 (413)
++|+|+|+ |.+|+.+++.|.+.|++|++++++.. ..+.+.+ .....+.+|.++.+.+.++ + .++|+|
T Consensus 7 ~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~----~~~~~~~-----~~~~~~~~d~~~~~~l~~~~~--~~~d~v 74 (144)
T 2hmt_A 7 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEE----KVNAYAS-----YATHAVIANATEENELLSLGI--RNFEYV 74 (144)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHH----HHHTTTT-----TCSEEEECCTTCHHHHHTTTG--GGCSEE
T ss_pred CcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHH-----hCCEEEEeCCCCHHHHHhcCC--CCCCEE
Confidence 78999997 99999999999999999999986421 1111111 2356788999998877765 4 579999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
|++++.. .+.|. .++..+++.+.+++|..++
T Consensus 75 i~~~~~~------------~~~~~----~~~~~~~~~~~~~ii~~~~ 105 (144)
T 2hmt_A 75 IVAIGAN------------IQAST----LTTLLLKELDIPNIWVKAQ 105 (144)
T ss_dssp EECCCSC------------HHHHH----HHHHHHHHTTCSEEEEECC
T ss_pred EECCCCc------------hHHHH----HHHHHHHHcCCCeEEEEeC
Confidence 9998631 11222 3555666777777777666
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.6e-07 Score=75.68 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=57.3
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
|++|+|+|+ |.+|+++++.|.+.|++|++++++.. ..+.+.+ .++.++.+|.++++.+.++- -.++|+|
T Consensus 6 ~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~----~~~~~~~-----~~~~~~~gd~~~~~~l~~~~-~~~~d~v 74 (141)
T 3llv_A 6 RYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKE----KIELLED-----EGFDAVIADPTDESFYRSLD-LEGVSAV 74 (141)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHH----HHHHHHH-----TTCEEEECCTTCHHHHHHSC-CTTCSEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHH----HHHHHHH-----CCCcEEECCCCCHHHHHhCC-cccCCEE
Confidence 478999997 99999999999999999999986432 2222222 35778899999999888762 2578999
Q ss_pred EEcCc
Q 015080 150 MHFAA 154 (413)
Q Consensus 150 i~~Ag 154 (413)
|.+.+
T Consensus 75 i~~~~ 79 (141)
T 3llv_A 75 LITGS 79 (141)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 97765
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-07 Score=93.37 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=72.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|+||| +|++|+++++.|++.|++|++++|+.. .+.+.... -..+..+.+|++|.+++.+++ .++|+||
T Consensus 4 k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~---~a~~la~~----~~~~~~~~~Dv~d~~~l~~~l--~~~DvVI 73 (450)
T 1ff9_A 4 KSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLE---SAKKLSAG----VQHSTPISLDVNDDAALDAEV--AKHDLVI 73 (450)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHH---HHHHTTTT----CTTEEEEECCTTCHHHHHHHH--TTSSEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHH---HHHHHHHh----cCCceEEEeecCCHHHHHHHH--cCCcEEE
Confidence 7899998 799999999999999999999887432 22111111 124778899999999999988 5899999
Q ss_pred EcCcccCccCCcCChHHHHHH--H-------HHHHHHHHHHHHHcCC
Q 015080 151 HFAAVAYVGESTLDPLKYYHN--I-------TSNTLVVLESMARHGV 188 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~--n-------~~~~~~ll~~~~~~~~ 188 (413)
||++...... -....++. | ...+..++++++++++
T Consensus 74 n~a~~~~~~~---i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv 117 (450)
T 1ff9_A 74 SLIPYTFHAT---VIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGI 117 (450)
T ss_dssp ECCC--CHHH---HHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTC
T ss_pred ECCccccchH---HHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCC
Confidence 9998632110 01111221 1 1246788888988876
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-06 Score=71.57 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=67.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHH-hhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKF-FSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~dvv 149 (413)
|+|+|+|+ |.+|..+++.|.+.|++|++++++.. ..+.+.+. .++.++.+|.++.+.+.+. + .++|+|
T Consensus 5 m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~----~~~~~~~~----~~~~~~~~d~~~~~~l~~~~~--~~~d~v 73 (140)
T 1lss_A 5 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKD----ICKKASAE----IDALVINGDCTKIKTLEDAGI--EDADMY 73 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHH----CSSEEEESCTTSHHHHHHTTT--TTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHH----HHHHHHHh----cCcEEEEcCCCCHHHHHHcCc--ccCCEE
Confidence 68999986 99999999999999999999986432 22222221 2466788999998877654 3 578999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
|++.+. . ..|. .+...+++.+.+++|..++
T Consensus 74 i~~~~~---------~----~~~~----~~~~~~~~~~~~~ii~~~~ 103 (140)
T 1lss_A 74 IAVTGK---------E----EVNL----MSSLLAKSYGINKTIARIS 103 (140)
T ss_dssp EECCSC---------H----HHHH----HHHHHHHHTTCCCEEEECS
T ss_pred EEeeCC---------c----hHHH----HHHHHHHHcCCCEEEEEec
Confidence 998642 1 1222 3445566666667776443
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.45 E-value=6.5e-07 Score=85.66 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=70.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|+|.|| |++|+.+++.|.+ .++|.+.+++.++.+ .+ ...+..+.+|++|.+++.+++ .+.|+||
T Consensus 17 mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~----~~------~~~~~~~~~d~~d~~~l~~~~--~~~DvVi 82 (365)
T 3abi_A 17 MKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLE----KV------KEFATPLKVDASNFDKLVEVM--KEFELVI 82 (365)
T ss_dssp CEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHH----HH------TTTSEEEECCTTCHHHHHHHH--TTCSEEE
T ss_pred cEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHH----HH------hccCCcEEEecCCHHHHHHHH--hCCCEEE
Confidence 67999998 9999999999865 589999886533222 11 135677889999999999999 6889999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSS 195 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~S 195 (413)
++++... ...++++|.++++ ++|-+|
T Consensus 83 ~~~p~~~------------------~~~v~~~~~~~g~-~yvD~s 108 (365)
T 3abi_A 83 GALPGFL------------------GFKSIKAAIKSKV-DMVDVS 108 (365)
T ss_dssp ECCCGGG------------------HHHHHHHHHHHTC-EEEECC
T ss_pred EecCCcc------------------cchHHHHHHhcCc-ceEeee
Confidence 9986421 1357888888875 777765
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.8e-06 Score=80.62 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=77.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|.|+||+|++|..++..|+..| .+|+++|++. .+.....+.+.. .+..+....+ ..+.++++ .+.|+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~-~~~~l~~~~~----t~d~~~a~--~~aDv 71 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIE-TRATVKGYLG----PEQLPDCL--KGCDV 71 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSS-SSCEEEEEES----GGGHHHHH--TTCSE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccC-cCceEEEecC----CCCHHHHh--CCCCE
Confidence 479999999999999999999988 7999999854 222222222211 1112222211 12345556 78999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC-CEEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV-DTLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~iV~~SS 196 (413)
||++||....+ .....+.+..|+..++.+++.+.+... .++|++|.
T Consensus 72 Vvi~ag~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 72 VVIPAGVPRKP--GMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp EEECCSCCCCT--TCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EEECCCcCCCC--CCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 99999975321 233445688999999999999998753 47777765
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=5.2e-06 Score=69.04 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=56.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHH-hhcCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKF-FSENA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~ 145 (413)
..+ ++|+|+|+ |.+|..+++.|.+.|++|++++++....+ .+.. ..++..+.+|.++.+.+.++ + .+
T Consensus 17 ~~~-~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~----~~~~----~~g~~~~~~d~~~~~~l~~~~~--~~ 84 (155)
T 2g1u_A 17 QKS-KYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFH----RLNS----EFSGFTVVGDAAEFETLKECGM--EK 84 (155)
T ss_dssp CCC-CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGG----GSCT----TCCSEEEESCTTSHHHHHTTTG--GG
T ss_pred cCC-CcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHH----HHHh----cCCCcEEEecCCCHHHHHHcCc--cc
Confidence 345 78999995 99999999999999999999987543222 1110 13456778999998777654 4 57
Q ss_pred CcEEEEcCc
Q 015080 146 FDAVMHFAA 154 (413)
Q Consensus 146 ~dvvi~~Ag 154 (413)
+|+||.+.+
T Consensus 85 ad~Vi~~~~ 93 (155)
T 2g1u_A 85 ADMVFAFTN 93 (155)
T ss_dssp CSEEEECSS
T ss_pred CCEEEEEeC
Confidence 899998865
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.9e-07 Score=87.90 Aligned_cols=75 Identities=20% Similarity=0.277 Sum_probs=59.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
++|+|+|+ |++|+++++.|++. |++|++++|+.. ++.+.... .++..+.+|++|.+++.+++ .++|+|
T Consensus 24 k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~---ka~~la~~-----~~~~~~~~D~~d~~~l~~~l--~~~DvV 92 (467)
T 2axq_A 24 KNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLA---NAQALAKP-----SGSKAISLDVTDDSALDKVL--ADNDVV 92 (467)
T ss_dssp EEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHH---HHHHHHGG-----GTCEEEECCTTCHHHHHHHH--HTSSEE
T ss_pred CEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHH---HHHHHHHh-----cCCcEEEEecCCHHHHHHHH--cCCCEE
Confidence 89999997 99999999999998 789999887532 22222111 24667789999999999888 579999
Q ss_pred EEcCccc
Q 015080 150 MHFAAVA 156 (413)
Q Consensus 150 i~~Ag~~ 156 (413)
||+++..
T Consensus 93 In~tp~~ 99 (467)
T 2axq_A 93 ISLIPYT 99 (467)
T ss_dssp EECSCGG
T ss_pred EECCchh
Confidence 9999864
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.2e-06 Score=80.47 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=76.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--E-----EEEEecCCC--CCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHh
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--R-----VTIVDNLSR--GNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFF 141 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~-----V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 141 (413)
++|+||||+|+||++++..|+..|. + ++++|+... ..+.....+.+... .-..-+.. .....+.+
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~--~~~~~~~~----~~~~~~~~ 77 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL--PLLKDVIA----TDKEEIAF 77 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCC--TTEEEEEE----ESCHHHHT
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhh--cccCCEEE----cCCcHHHh
Confidence 7899999999999999999998875 5 888876321 11122222333210 11111111 11233445
Q ss_pred hcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC--EEEEecc
Q 015080 142 SENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD--TLIYSST 196 (413)
Q Consensus 142 ~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~iV~~SS 196 (413)
.+.|+||+.||.... ...+..+.++.|+..++.+++.+.+.+.+ +++.+|.
T Consensus 78 --~daDvVvitAg~prk--pG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 78 --KDLDVAILVGSMPRR--DGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp --TTCSEEEECCSCCCC--TTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred --CCCCEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 689999999996532 22356678899999999999999998754 5777776
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=2e-06 Score=74.69 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=63.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHH---hhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKF---FSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~---~~~~~~d 147 (413)
++||||||+|+||..+++.+...|++|++++++.. ..+.++++ +.. . ..|.++.+..+++ ....++|
T Consensus 40 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~----~~~~~~~~---g~~--~-~~d~~~~~~~~~~~~~~~~~~~D 109 (198)
T 1pqw_A 40 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA----KREMLSRL---GVE--Y-VGDSRSVDFADEILELTDGYGVD 109 (198)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH----HHHHHHTT---CCS--E-EEETTCSTHHHHHHHHTTTCCEE
T ss_pred CEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHc---CCC--E-EeeCCcHHHHHHHHHHhCCCCCe
Confidence 89999999999999999999999999999886422 22222322 121 1 2466665433333 3224699
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
+||+|+|.. .....++.++. .+++|.+++..
T Consensus 110 ~vi~~~g~~------------------~~~~~~~~l~~--~G~~v~~g~~~ 140 (198)
T 1pqw_A 110 VVLNSLAGE------------------AIQRGVQILAP--GGRFIELGKKD 140 (198)
T ss_dssp EEEECCCTH------------------HHHHHHHTEEE--EEEEEECSCGG
T ss_pred EEEECCchH------------------HHHHHHHHhcc--CCEEEEEcCCC
Confidence 999999721 12234444443 35999988744
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-05 Score=65.75 Aligned_cols=76 Identities=21% Similarity=0.353 Sum_probs=57.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHH-hhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKF-FSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~dvv 149 (413)
++|+|+|+ |.+|+.+++.|.+.|++|++++++. .+..+.+.... ..++.++.+|.++++.+.++ + .+.|+|
T Consensus 4 ~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~---~~~~~~~~~~~--~~~~~~i~gd~~~~~~l~~a~i--~~ad~v 75 (153)
T 1id1_A 4 DHFIVCGH-SILAINTILQLNQRGQNVTVISNLP---EDDIKQLEQRL--GDNADVIPGDSNDSSVLKKAGI--DRCRAI 75 (153)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCC---HHHHHHHHHHH--CTTCEEEESCTTSHHHHHHHTT--TTCSEE
T ss_pred CcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCC---hHHHHHHHHhh--cCCCeEEEcCCCCHHHHHHcCh--hhCCEE
Confidence 67999995 9999999999999999999998642 11112222211 24688999999999998876 5 678999
Q ss_pred EEcCc
Q 015080 150 MHFAA 154 (413)
Q Consensus 150 i~~Ag 154 (413)
|-+.+
T Consensus 76 i~~~~ 80 (153)
T 1id1_A 76 LALSD 80 (153)
T ss_dssp EECSS
T ss_pred EEecC
Confidence 97754
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.3e-05 Score=75.37 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=74.8
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
+++|.|+|++|++|+.++..|+..| .+|+++|.+....+.....+.+......++.+ . + +..+.+ .+.|
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t---~---d~~~al--~dAD 78 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-T---S---DIKEAL--TDAK 78 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-E---S---CHHHHH--TTEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-c---C---CHHHHh--CCCC
Confidence 3789999999999999999999998 48999986433222222223332111112221 1 1 233445 6889
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCE--EEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT--LIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~--iV~~SS 196 (413)
+||.+||.... ...+..+.+..|....+.+.+.+.+....- ++.+|.
T Consensus 79 vVvitaG~p~k--pG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN 127 (343)
T 3fi9_A 79 YIVSSGGAPRK--EGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127 (343)
T ss_dssp EEEECCC---------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred EEEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence 99999996422 234566788999999999999999886443 456654
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=3.1e-06 Score=70.64 Aligned_cols=74 Identities=18% Similarity=0.164 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHHCCCEEEEEecCCCCCch---hhhhhhhhcCCCCceEEEEccCCCH--HHHHHHhhc-----CCCcE
Q 015080 79 AGYIGSHAALRLLKDSYRVTIVDNLSRGNIG---AVKVLQELFPEPGRLQFIYADLGDA--KAVNKFFSE-----NAFDA 148 (413)
Q Consensus 79 sG~IG~~la~~L~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~d~--~~~~~~~~~-----~~~dv 148 (413)
+|.++.++++.|++.|++|++..|....... ..+.+.+. +..+..+.+|++++ ++++++++. ++ |+
T Consensus 25 s~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~---G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-dV 100 (157)
T 3gxh_A 25 SGLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQA---GMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-DV 100 (157)
T ss_dssp EBCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHT---TCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-CE
T ss_pred cCCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHc---CCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-CE
Confidence 3678999999999999999988765443222 23333332 45677889999999 888776653 45 99
Q ss_pred EEEcCccc
Q 015080 149 VMHFAAVA 156 (413)
Q Consensus 149 vi~~Ag~~ 156 (413)
+|||||..
T Consensus 101 LVnnAgg~ 108 (157)
T 3gxh_A 101 LVHCLANY 108 (157)
T ss_dssp EEECSBSH
T ss_pred EEECCCCC
Confidence 99999963
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.2e-05 Score=74.65 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=59.5
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
+.+ |+++|+|+ |++|++++..|++.|+ +|++++|+.+..+++.+...++... ..+.+...++.+.+++.+.+ ..
T Consensus 152 l~g-k~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~-~~~~~~~~~~~~~~~l~~~l--~~ 226 (315)
T 3tnl_A 152 IIG-KKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSK-TDCKAQLFDIEDHEQLRKEI--AE 226 (315)
T ss_dssp CTT-SEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHH--HT
T ss_pred ccC-CEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhh-cCCceEEeccchHHHHHhhh--cC
Confidence 346 89999996 8999999999999999 8999988633233333333222111 12344456777877787777 57
Q ss_pred CcEEEEcCccc
Q 015080 146 FDAVMHFAAVA 156 (413)
Q Consensus 146 ~dvvi~~Ag~~ 156 (413)
+|+|||+..+.
T Consensus 227 aDiIINaTp~G 237 (315)
T 3tnl_A 227 SVIFTNATGVG 237 (315)
T ss_dssp CSEEEECSSTT
T ss_pred CCEEEECccCC
Confidence 89999987653
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.9e-05 Score=67.49 Aligned_cols=75 Identities=17% Similarity=0.116 Sum_probs=56.8
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHH--hhc
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKF--FSE 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~--~~~ 143 (413)
..+ ++|+|.| .|.+|..+++.|.+. |++|++++++.. ..+.+.+ .++..+.+|.++.+.+.++ +
T Consensus 37 ~~~-~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~----~~~~~~~-----~g~~~~~gd~~~~~~l~~~~~~-- 103 (183)
T 3c85_A 37 PGH-AQVLILG-MGRIGTGAYDELRARYGKISLGIEIREE----AAQQHRS-----EGRNVISGDATDPDFWERILDT-- 103 (183)
T ss_dssp CTT-CSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHH----HHHHHHH-----TTCCEEECCTTCHHHHHTBCSC--
T ss_pred CCC-CcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHH----HHHHHHH-----CCCCEEEcCCCCHHHHHhccCC--
Confidence 345 6899999 599999999999999 999999986432 2222222 3466788999999887766 5
Q ss_pred CCCcEEEEcCc
Q 015080 144 NAFDAVMHFAA 154 (413)
Q Consensus 144 ~~~dvvi~~Ag 154 (413)
.++|+||.+.+
T Consensus 104 ~~ad~vi~~~~ 114 (183)
T 3c85_A 104 GHVKLVLLAMP 114 (183)
T ss_dssp CCCCEEEECCS
T ss_pred CCCCEEEEeCC
Confidence 57899997754
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.5e-05 Score=68.75 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=55.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHH-hhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKF-FSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~dvv 149 (413)
|+|+|+|+ |.+|+++++.|.+.|++|++++++.. ..+.+.+. .++.++.+|.++++.+.++ + .++|+|
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~----~~~~l~~~----~~~~~i~gd~~~~~~l~~a~i--~~ad~v 69 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRE----LCEEFAKK----LKATIIHGDGSHKEILRDAEV--SKNDVV 69 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHH----HHHHHHHH----SSSEEEESCTTSHHHHHHHTC--CTTCEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHH----HHHHHHHH----cCCeEEEcCCCCHHHHHhcCc--ccCCEE
Confidence 46999996 99999999999999999999986432 22222221 3577899999999988876 4 578999
Q ss_pred EEcCc
Q 015080 150 MHFAA 154 (413)
Q Consensus 150 i~~Ag 154 (413)
|-+.+
T Consensus 70 i~~~~ 74 (218)
T 3l4b_C 70 VILTP 74 (218)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 96543
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=8.6e-05 Score=69.36 Aligned_cols=114 Identities=17% Similarity=0.218 Sum_probs=76.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCC-CCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPE-PGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
++|.|+|+ |.+|+.++..|+..|. +|+++|++....+..+..+.+..+. +..+.....| . +.+ .+.|
T Consensus 6 ~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~---~----~a~--~~aD 75 (326)
T 3pqe_A 6 NKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT---Y----EDC--KDAD 75 (326)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC---G----GGG--TTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc---H----HHh--CCCC
Confidence 78999996 9999999999999987 8999986433222222223332211 1234444333 2 234 6889
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
+||.+||... ....+..+.+..|....+.+.+.+.+.... .++.+|.
T Consensus 76 vVvi~ag~p~--kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 76 IVCICAGANQ--KPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp EEEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred EEEEecccCC--CCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 9999999642 223456778899999999999999987543 5565554
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.83 E-value=8e-05 Score=66.97 Aligned_cols=79 Identities=22% Similarity=0.263 Sum_probs=56.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC-------------------CCCchhhhhhhhhcCCCCceEEEEcc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-------------------RGNIGAVKVLQELFPEPGRLQFIYAD 130 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~D 130 (413)
++|+|.| .|++|+++++.|+..|. +|+++|+.. .+.+.+.+.+.++.+. -.+..+..+
T Consensus 32 ~~VlVvG-~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-~~v~~~~~~ 109 (249)
T 1jw9_B 32 SRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPH-IAITPVNAL 109 (249)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT-SEEEEECSC
T ss_pred CeEEEEe-eCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCC-cEEEEEecc
Confidence 7899999 59999999999999997 899998765 2333344445554332 346666666
Q ss_pred CCCHHHHHHHhhcCCCcEEEEcCc
Q 015080 131 LGDAKAVNKFFSENAFDAVMHFAA 154 (413)
Q Consensus 131 l~d~~~~~~~~~~~~~dvvi~~Ag 154 (413)
+++ +.+.+++ .++|+||.+..
T Consensus 110 ~~~-~~~~~~~--~~~DvVi~~~d 130 (249)
T 1jw9_B 110 LDD-AELAALI--AEHDLVLDCTD 130 (249)
T ss_dssp CCH-HHHHHHH--HTSSEEEECCS
T ss_pred CCH-hHHHHHH--hCCCEEEEeCC
Confidence 763 5566677 57899998753
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.7e-05 Score=75.80 Aligned_cols=106 Identities=22% Similarity=0.250 Sum_probs=68.7
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
.+.+ ++|+|+|+ |.||..+++.|...|++|++++++..+ .+.+.+..+ .. +.+|.++.+++.+++ .+
T Consensus 163 ~l~~-~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~----~~~~~~~~g--~~---~~~~~~~~~~l~~~~--~~ 229 (369)
T 2eez_A 163 GVAP-ASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKR----LQYLDDVFG--GR---VITLTATEANIKKSV--QH 229 (369)
T ss_dssp BBCC-CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHTT--TS---EEEEECCHHHHHHHH--HH
T ss_pred CCCC-CEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHH----HHHHHHhcC--ce---EEEecCCHHHHHHHH--hC
Confidence 3556 89999998 999999999999999999999864322 122222111 22 456788888888888 57
Q ss_pred CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc
Q 015080 146 FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTC 197 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~ 197 (413)
+|+||++++...... + ...++..++.|+. .+.||.+|+.
T Consensus 230 ~DvVi~~~g~~~~~~----~-------~li~~~~l~~mk~--gg~iV~v~~~ 268 (369)
T 2eez_A 230 ADLLIGAVLVPGAKA----P-------KLVTRDMLSLMKE--GAVIVDVAVD 268 (369)
T ss_dssp CSEEEECCC------------------CCSCHHHHTTSCT--TCEEEECC--
T ss_pred CCEEEECCCCCcccc----c-------hhHHHHHHHhhcC--CCEEEEEecC
Confidence 899999998542100 0 0012334555542 3689999974
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=3.3e-05 Score=72.71 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=50.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhh---cCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFS---ENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~~~d 147 (413)
++||||||+|+||..+++.+...|++|++++++.. ..+.++++ +.. ..+|.++.+++.+.+. ..++|
T Consensus 147 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~----~~~~~~~~---g~~---~~~d~~~~~~~~~~~~~~~~~~~d 216 (333)
T 1v3u_A 147 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDE----KIAYLKQI---GFD---AAFNYKTVNSLEEALKKASPDGYD 216 (333)
T ss_dssp CEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHT---TCS---EEEETTSCSCHHHHHHHHCTTCEE
T ss_pred CEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHhc---CCc---EEEecCCHHHHHHHHHHHhCCCCe
Confidence 89999999999999999999999999999886432 22222333 111 2247665222322222 14799
Q ss_pred EEEEcCc
Q 015080 148 AVMHFAA 154 (413)
Q Consensus 148 vvi~~Ag 154 (413)
+||+|+|
T Consensus 217 ~vi~~~g 223 (333)
T 1v3u_A 217 CYFDNVG 223 (333)
T ss_dssp EEEESSC
T ss_pred EEEECCC
Confidence 9999998
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=97.80 E-value=5.6e-05 Score=71.11 Aligned_cols=75 Identities=13% Similarity=0.074 Sum_probs=51.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHH---HHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAK---AVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~~d 147 (413)
++||||||+|+||..+++.+...|++|++++++.. ..+.++++ +.. . ..|.++.+ .+.+.....++|
T Consensus 147 ~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~----~~~~~~~~---g~~-~--~~d~~~~~~~~~i~~~~~~~~~d 216 (333)
T 1wly_A 147 DYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEE----KAETARKL---GCH-H--TINYSTQDFAEVVREITGGKGVD 216 (333)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHH---TCS-E--EEETTTSCHHHHHHHHHTTCCEE
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHc---CCC-E--EEECCCHHHHHHHHHHhCCCCCe
Confidence 79999999999999999999999999999886432 22233333 112 1 23655543 333433335799
Q ss_pred EEEEcCcc
Q 015080 148 AVMHFAAV 155 (413)
Q Consensus 148 vvi~~Ag~ 155 (413)
+||+|+|.
T Consensus 217 ~vi~~~g~ 224 (333)
T 1wly_A 217 VVYDSIGK 224 (333)
T ss_dssp EEEECSCT
T ss_pred EEEECCcH
Confidence 99999984
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=5e-05 Score=71.21 Aligned_cols=74 Identities=11% Similarity=0.043 Sum_probs=51.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHH---HHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVN---KFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~---~~~~~~~~d 147 (413)
++||||||+|+||..+++.+...|++|++++++.. ..+.++++ +.. . ..|.++.+..+ +.....++|
T Consensus 142 ~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~----~~~~~~~~---g~~-~--~~~~~~~~~~~~~~~~~~~~~~D 211 (327)
T 1qor_A 142 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ----KAQSALKA---GAW-Q--VINYREEDLVERLKEITGGKKVR 211 (327)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH----HHHHHHHH---TCS-E--EEETTTSCHHHHHHHHTTTCCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHc---CCC-E--EEECCCccHHHHHHHHhCCCCce
Confidence 89999999999999999999999999999886432 22233333 112 1 23655544333 333234799
Q ss_pred EEEEcCc
Q 015080 148 AVMHFAA 154 (413)
Q Consensus 148 vvi~~Ag 154 (413)
+||+|+|
T Consensus 212 ~vi~~~g 218 (327)
T 1qor_A 212 VVYDSVG 218 (327)
T ss_dssp EEEECSC
T ss_pred EEEECCc
Confidence 9999998
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.8e-05 Score=73.63 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=51.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHH----HHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAV----NKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~----~~~~~~~~~ 146 (413)
++|||+||+|+||..+++.+...|++|++++++..+. +.++++ +.. ...|+++.+++ .++.. .++
T Consensus 171 ~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~----~~~~~~---g~~---~~~d~~~~~~~~~~~~~~~~-~~~ 239 (347)
T 2hcy_A 171 HWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKE----ELFRSI---GGE---VFIDFTKEKDIVGAVLKATD-GGA 239 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHH----HHHHHT---TCC---EEEETTTCSCHHHHHHHHHT-SCE
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHH----HHHHHc---CCc---eEEecCccHhHHHHHHHHhC-CCC
Confidence 8999999999999999999999999999998644322 233332 111 12376643333 33332 279
Q ss_pred cEEEEcCcc
Q 015080 147 DAVMHFAAV 155 (413)
Q Consensus 147 dvvi~~Ag~ 155 (413)
|+||+++|.
T Consensus 240 D~vi~~~g~ 248 (347)
T 2hcy_A 240 HGVINVSVS 248 (347)
T ss_dssp EEEEECSSC
T ss_pred CEEEECCCc
Confidence 999999983
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=3.2e-05 Score=73.51 Aligned_cols=75 Identities=11% Similarity=0.082 Sum_probs=51.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHH---HHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKA---VNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~---~~~~~~~~~~d 147 (413)
++||||||+|+||..+++.+...|++|++++++..+ .+.++++ +.. ..+|..+.+. +.+.....++|
T Consensus 164 ~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~----~~~~~~~---g~~---~~~~~~~~~~~~~~~~~~~~~~~d 233 (354)
T 2j8z_A 164 DYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKK----LQMAEKL---GAA---AGFNYKKEDFSEATLKFTKGAGVN 233 (354)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHH---TCS---EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHc---CCc---EEEecCChHHHHHHHHHhcCCCce
Confidence 799999999999999999999999999998864322 2223333 112 1245555433 33333234799
Q ss_pred EEEEcCcc
Q 015080 148 AVMHFAAV 155 (413)
Q Consensus 148 vvi~~Ag~ 155 (413)
+||+|+|.
T Consensus 234 ~vi~~~G~ 241 (354)
T 2j8z_A 234 LILDCIGG 241 (354)
T ss_dssp EEEESSCG
T ss_pred EEEECCCc
Confidence 99999984
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.73 E-value=6.1e-05 Score=61.31 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=56.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
++|+|.|+ |.+|+.+++.|.+.|++|++++++.. ..+.+.+ .++.++.+|.++++.+.++-- .+.|+||
T Consensus 8 ~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~----~~~~~~~-----~g~~~i~gd~~~~~~l~~a~i-~~ad~vi 76 (140)
T 3fwz_A 8 NHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRT----RVDELRE-----RGVRAVLGNAANEEIMQLAHL-ECAKWLI 76 (140)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHH----HHHHHHH-----TTCEEEESCTTSHHHHHHTTG-GGCSEEE
T ss_pred CCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHH----HHHHHHH-----cCCCEEECCCCCHHHHHhcCc-ccCCEEE
Confidence 68999995 99999999999999999999986432 2222222 367889999999998876521 4789998
Q ss_pred EcCc
Q 015080 151 HFAA 154 (413)
Q Consensus 151 ~~Ag 154 (413)
-+.+
T Consensus 77 ~~~~ 80 (140)
T 3fwz_A 77 LTIP 80 (140)
T ss_dssp ECCS
T ss_pred EECC
Confidence 6654
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=4.9e-05 Score=70.92 Aligned_cols=114 Identities=16% Similarity=0.199 Sum_probs=65.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
++|.|+|+ |.+|+.++..|+..|. +|+++|++....+.....+.+..+....+.+...| . +.+ .+.|+
T Consensus 10 ~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~---~----~a~--~~aDi 79 (326)
T 3vku_A 10 QKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE---Y----SDA--KDADL 79 (326)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC---G----GGG--TTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc---H----HHh--cCCCE
Confidence 78999996 9999999999999887 89999864332222222333221111234443333 2 234 68999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC-CEEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV-DTLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~iV~~SS 196 (413)
||.+||.... .-.+..+.++.|..-.+.+.+.+.+... ..++.+|.
T Consensus 80 Vvi~ag~~~k--pG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN 126 (326)
T 3vku_A 80 VVITAGAPQK--PGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp EEECCCCC------------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred EEECCCCCCC--CCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence 9999996432 1234556788899989999999988753 35555554
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.72 E-value=2e-05 Score=71.94 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=48.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+++|+|+ |++|++++..|++.|++|++++|+..+.+++.+.+.. . ..+. ..|+ +++ .+ .++|+||
T Consensus 120 k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~---~-~~~~--~~~~---~~~---~~-~~~DivV 185 (271)
T 1nyt_A 120 LRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAH---T-GSIQ--ALSM---DEL---EG-HEFDLII 185 (271)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGG---G-SSEE--ECCS---GGG---TT-CCCSEEE
T ss_pred CEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhc---c-CCee--EecH---HHh---cc-CCCCEEE
Confidence 89999997 8999999999999999999987654332223222211 1 1222 2333 222 11 4799999
Q ss_pred EcCcccC
Q 015080 151 HFAAVAY 157 (413)
Q Consensus 151 ~~Ag~~~ 157 (413)
|+++...
T Consensus 186 n~t~~~~ 192 (271)
T 1nyt_A 186 NATSSGI 192 (271)
T ss_dssp ECCSCGG
T ss_pred ECCCCCC
Confidence 9998754
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=4e-05 Score=72.69 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=50.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHH---HHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAV---NKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~---~~~~~~~~~d 147 (413)
++|||+||+|+||..+++.+...|++|++++++..+ .+.++++ +.. ...|..+.+.. .+.....++|
T Consensus 172 ~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~----~~~~~~~---ga~---~~~d~~~~~~~~~~~~~~~~~~~D 241 (351)
T 1yb5_A 172 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEG----QKIVLQN---GAH---EVFNHREVNYIDKIKKYVGEKGID 241 (351)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHT---TCS---EEEETTSTTHHHHHHHHHCTTCEE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhH----HHHHHHc---CCC---EEEeCCCchHHHHHHHHcCCCCcE
Confidence 799999999999999999999999999998864322 2233333 111 12455554433 3333224799
Q ss_pred EEEEcCc
Q 015080 148 AVMHFAA 154 (413)
Q Consensus 148 vvi~~Ag 154 (413)
+||+|+|
T Consensus 242 ~vi~~~G 248 (351)
T 1yb5_A 242 IIIEMLA 248 (351)
T ss_dssp EEEESCH
T ss_pred EEEECCC
Confidence 9999998
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00035 Score=65.15 Aligned_cols=114 Identities=16% Similarity=0.220 Sum_probs=72.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
++|.|+|+ |.+|..++..|+..|. +|+++|.+..+.+.....+.+.......+.+.. .+. +.+ .+.|+
T Consensus 8 ~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~---~~~----~a~--~~aDv 77 (318)
T 1y6j_A 8 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA---GDY----SDV--KDCDV 77 (318)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----CG----GGG--TTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE---CCH----HHh--CCCCE
Confidence 67999997 9999999999999987 999999876555543333333211112333221 232 234 68999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
||.++|...- ......+....|+...+.+.+.+.+.+..-+|.+.|
T Consensus 78 Vii~~g~p~k--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (318)
T 1y6j_A 78 IVVTAGANRK--PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 123 (318)
T ss_dssp EEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred EEEcCCCCCC--CCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence 9999986431 123455678889999999999999875444444444
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00017 Score=67.78 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=51.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC---HHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD---AKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d---~~~~~~~~~~~~~d 147 (413)
++|||+||+|.||..++..+...|++|++++++.. ..+.++++ +.. .. .|..+ .+.+.+.....++|
T Consensus 150 ~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~~~~---ga~-~~--~~~~~~~~~~~~~~~~~~~g~D 219 (334)
T 3qwb_A 150 DYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDE----KLKIAKEY---GAE-YL--INASKEDILRQVLKFTNGKGVD 219 (334)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHT---TCS-EE--EETTTSCHHHHHHHHTTTSCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHc---CCc-EE--EeCCCchHHHHHHHHhCCCCce
Confidence 79999999999999999999999999999886432 22233333 122 12 23333 33444444335799
Q ss_pred EEEEcCcc
Q 015080 148 AVMHFAAV 155 (413)
Q Consensus 148 vvi~~Ag~ 155 (413)
+||+|+|.
T Consensus 220 ~vid~~g~ 227 (334)
T 3qwb_A 220 ASFDSVGK 227 (334)
T ss_dssp EEEECCGG
T ss_pred EEEECCCh
Confidence 99999984
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.62 E-value=9.4e-05 Score=69.79 Aligned_cols=75 Identities=19% Similarity=0.107 Sum_probs=51.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH---HHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA---KAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~~d 147 (413)
++|||+||+|.||..++..+...|++|++++++..+.+ .++++ +... . .|..+. +.+.+.....++|
T Consensus 146 ~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~----~~~~l---ga~~-~--~~~~~~~~~~~~~~~~~~~g~D 215 (340)
T 3gms_A 146 DVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTE----ELLRL---GAAY-V--IDTSTAPLYETVMELTNGIGAD 215 (340)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHH----HHHHH---TCSE-E--EETTTSCHHHHHHHHTTTSCEE
T ss_pred CEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HHHhC---CCcE-E--EeCCcccHHHHHHHHhCCCCCc
Confidence 79999999999999999999889999999987554433 22333 1222 2 243332 3344444335799
Q ss_pred EEEEcCcc
Q 015080 148 AVMHFAAV 155 (413)
Q Consensus 148 vvi~~Ag~ 155 (413)
+||+|+|.
T Consensus 216 vvid~~g~ 223 (340)
T 3gms_A 216 AAIDSIGG 223 (340)
T ss_dssp EEEESSCH
T ss_pred EEEECCCC
Confidence 99999984
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00036 Score=63.87 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=62.8
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC------------------CCCchhhhhhhhhcCCCCceEE
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS------------------RGNIGAVKVLQELFPEPGRLQF 126 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~ 126 (413)
.+.+ ++|+|.| .|++|+++++.|+..|. +++++|... .+.+.+++.++++.+. -.++.
T Consensus 33 kL~~-~~VlVvG-aGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~-v~v~~ 109 (292)
T 3h8v_A 33 KIRT-FAVAIVG-VGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPD-VLFEV 109 (292)
T ss_dssp GGGG-CEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTT-SEEEE
T ss_pred HHhC-CeEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCC-cEEEE
Confidence 3455 8999999 59999999999999997 788888654 2333455666666554 56777
Q ss_pred EEccCCCHHHHHHHhhc---------CCCcEEEEcC
Q 015080 127 IYADLGDAKAVNKFFSE---------NAFDAVMHFA 153 (413)
Q Consensus 127 ~~~Dl~d~~~~~~~~~~---------~~~dvvi~~A 153 (413)
+..++++.+.+.++++. .++|+||.+.
T Consensus 110 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~ 145 (292)
T 3h8v_A 110 HNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCV 145 (292)
T ss_dssp ECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECC
T ss_pred ecccCCcHHHHHHHhhhhcccccccCCCCCEEEECC
Confidence 78888887777766531 4799999775
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00011 Score=67.99 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=55.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
+.+ |++||+|+ |++|++++..|++.|+ +|++++|+..+.+++.+..+++... ........++.+.+.+.+.+ .+
T Consensus 146 l~g-k~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~-~~~~v~~~~~~~l~~~~~~l--~~ 220 (312)
T 3t4e_A 146 MRG-KTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNEN-TDCVVTVTDLADQHAFTEAL--AS 220 (312)
T ss_dssp CTT-CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHH--HH
T ss_pred cCC-CEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhc-cCcceEEechHhhhhhHhhc--cC
Confidence 345 89999996 9999999999999998 8999988633233333322222111 12333445666654445555 45
Q ss_pred CcEEEEcCccc
Q 015080 146 FDAVMHFAAVA 156 (413)
Q Consensus 146 ~dvvi~~Ag~~ 156 (413)
.|+|||+-...
T Consensus 221 ~DiIINaTp~G 231 (312)
T 3t4e_A 221 ADILTNGTKVG 231 (312)
T ss_dssp CSEEEECSSTT
T ss_pred ceEEEECCcCC
Confidence 79999987653
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=6.1e-05 Score=70.92 Aligned_cols=98 Identities=17% Similarity=0.174 Sum_probs=61.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhh-hhhcCCCCceEEEEccCCCHH---HHHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVL-QELFPEPGRLQFIYADLGDAK---AVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~~ 146 (413)
++|||+||+|+||..+++.+...|++|++++++..+ .+.+ +++ +.. .. .|..+.+ .+.+.. ..++
T Consensus 151 ~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~----~~~~~~~~---g~~-~~--~~~~~~~~~~~~~~~~-~~~~ 219 (336)
T 4b7c_A 151 ETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEK----CRFLVEEL---GFD-GA--IDYKNEDLAAGLKREC-PKGI 219 (336)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHTT---CCS-EE--EETTTSCHHHHHHHHC-TTCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHc---CCC-EE--EECCCHHHHHHHHHhc-CCCc
Confidence 899999999999999999999999999998764322 2222 332 121 11 3444433 233332 2479
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccee
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCAT 199 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~ 199 (413)
|+||+|+|.. .....++.++. .+++|.+++...
T Consensus 220 d~vi~~~g~~------------------~~~~~~~~l~~--~G~iv~~G~~~~ 252 (336)
T 4b7c_A 220 DVFFDNVGGE------------------ILDTVLTRIAF--KARIVLCGAISQ 252 (336)
T ss_dssp EEEEESSCHH------------------HHHHHHTTEEE--EEEEEECCCGGG
T ss_pred eEEEECCCcc------------------hHHHHHHHHhh--CCEEEEEeeccc
Confidence 9999999831 12223333333 368999887543
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00074 Score=62.58 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=75.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-C--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEc-cCCCHHHHHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-S--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYA-DLGDAKAVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dl~d~~~~~~~~~~~~~ 146 (413)
|+|.|+||+|.+|+.++..|... + .+++++|... ........+.+. ...+.+... .-.+.+ .+ .+.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~---~~~~~v~~~~~~~~~~----~~--~~a 70 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHI---PTAVKIKGFSGEDATP----AL--EGA 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTS---CSSEEEEEECSSCCHH----HH--TTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCC---CCCceEEEecCCCcHH----Hh--CCC
Confidence 46899999999999999999875 4 5899998754 222222223322 122222211 112333 33 688
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC-CEEEEecc
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV-DTLIYSST 196 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~iV~~SS 196 (413)
|+||..||... ..-.+..+.++.|..-.+.+.+.+.+... ..++.+|.
T Consensus 71 Divii~ag~~r--kpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN 119 (312)
T 3hhp_A 71 DVVLISAGVAR--KPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (312)
T ss_dssp SEEEECCSCSC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CEEEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 99999999643 22346778899999999999999988753 36666654
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00015 Score=68.68 Aligned_cols=97 Identities=7% Similarity=0.084 Sum_probs=62.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH---HHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA---KAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~~d 147 (413)
++++|+||+|.||..++..+...|++|++++++..+. +.++++ +.. .. .|..+. +.+.++....++|
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~----~~~~~~---Ga~-~~--~~~~~~~~~~~v~~~~~~~g~D 235 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQI----ALLKDI---GAA-HV--LNEKAPDFEATLREVMKAEQPR 235 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGH----HHHHHH---TCS-EE--EETTSTTHHHHHHHHHHHHCCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHc---CCC-EE--EECCcHHHHHHHHHHhcCCCCc
Confidence 6899999999999999999999999999998644332 233333 111 22 233332 2344444335899
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTC 197 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~ 197 (413)
+||+++|.. .....++.++. .+++|.+++.
T Consensus 236 ~vid~~g~~------------------~~~~~~~~l~~--~G~iv~~G~~ 265 (349)
T 3pi7_A 236 IFLDAVTGP------------------LASAIFNAMPK--RARWIIYGRL 265 (349)
T ss_dssp EEEESSCHH------------------HHHHHHHHSCT--TCEEEECCCS
T ss_pred EEEECCCCh------------------hHHHHHhhhcC--CCEEEEEecc
Confidence 999999831 01234444433 4699998763
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=5.8e-05 Score=71.73 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=49.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhh-hcCCCCceEEEEccCCCHH---HHHHHhhcCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQE-LFPEPGRLQFIYADLGDAK---AVNKFFSENA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~ 145 (413)
++||||||+|+||..+++.+...|+ +|++++++.. ..+.+.+ + +.. ..+|..+.+ .+.+... .+
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~----~~~~~~~~~---g~~---~~~d~~~~~~~~~~~~~~~-~~ 230 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHE----KCILLTSEL---GFD---AAINYKKDNVAEQLRESCP-AG 230 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHH----HHHHHHHTS---CCS---EEEETTTSCHHHHHHHHCT-TC
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHH----HHHHHHHHc---CCc---eEEecCchHHHHHHHHhcC-CC
Confidence 6899999999999999999999999 9999886422 2222222 2 111 124665533 3333332 27
Q ss_pred CcEEEEcCc
Q 015080 146 FDAVMHFAA 154 (413)
Q Consensus 146 ~dvvi~~Ag 154 (413)
+|+||+|+|
T Consensus 231 ~d~vi~~~G 239 (357)
T 2zb4_A 231 VDVYFDNVG 239 (357)
T ss_dssp EEEEEESCC
T ss_pred CCEEEECCC
Confidence 999999998
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00025 Score=66.29 Aligned_cols=115 Identities=15% Similarity=0.112 Sum_probs=76.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
++|.|+|+ |.+|..++..|+..|. +|+++|++....+.....+.+..........+.. .|.+ .+ .+.|+
T Consensus 20 ~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~--~d~~----~~--~~aDi 90 (331)
T 4aj2_A 20 NKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS--KDYS----VT--ANSKL 90 (331)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEEC--SSGG----GG--TTEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEc--CCHH----Hh--CCCCE
Confidence 78999997 9999999999999987 8999986433223333333332111112223322 1322 24 68899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC-CEEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV-DTLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~iV~~SS 196 (413)
||.+||.... .-.+..+.++.|..-.+.+.+.+.+... ..++.+|.
T Consensus 91 Vvi~aG~~~k--pG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 91 VIITAGARQQ--EGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp EEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEEccCCCCC--CCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999997532 2345667899999999999999998854 35666664
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00013 Score=68.84 Aligned_cols=76 Identities=22% Similarity=0.168 Sum_probs=50.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH-HHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA-KAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~~~dvv 149 (413)
++|||+||+|.||..++..+...|++|++++++..+. +.++++ +.. ..+..+ .+. +.+.+.....++|+|
T Consensus 161 ~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~----~~~~~~---ga~-~v~~~~-~~~~~~v~~~~~~~g~Dvv 231 (342)
T 4eye_A 161 ETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAAT----EFVKSV---GAD-IVLPLE-EGWAKAVREATGGAGVDMV 231 (342)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGH----HHHHHH---TCS-EEEESS-TTHHHHHHHHTTTSCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH----HHHHhc---CCc-EEecCc-hhHHHHHHHHhCCCCceEE
Confidence 7999999999999999999999999999988644332 233333 111 223233 222 234444433479999
Q ss_pred EEcCcc
Q 015080 150 MHFAAV 155 (413)
Q Consensus 150 i~~Ag~ 155 (413)
|+|+|.
T Consensus 232 id~~g~ 237 (342)
T 4eye_A 232 VDPIGG 237 (342)
T ss_dssp EESCC-
T ss_pred EECCch
Confidence 999984
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00019 Score=67.25 Aligned_cols=75 Identities=15% Similarity=0.045 Sum_probs=51.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH---HHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA---KAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~~d 147 (413)
++|||+||+|.||..+++.+...|++|++++++..+ .+.++++ +.. .. .|..+. +.+.+.....++|
T Consensus 142 ~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~----~~~~~~~---Ga~-~~--~~~~~~~~~~~~~~~~~~~g~D 211 (325)
T 3jyn_A 142 EIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEK----AAHAKAL---GAW-ET--IDYSHEDVAKRVLELTDGKKCP 211 (325)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHH----HHHHHHH---TCS-EE--EETTTSCHHHHHHHHTTTCCEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHc---CCC-EE--EeCCCccHHHHHHHHhCCCCce
Confidence 799999999999999999999999999998864322 2233333 112 22 244333 3344444335799
Q ss_pred EEEEcCcc
Q 015080 148 AVMHFAAV 155 (413)
Q Consensus 148 vvi~~Ag~ 155 (413)
+||+|+|.
T Consensus 212 vvid~~g~ 219 (325)
T 3jyn_A 212 VVYDGVGQ 219 (325)
T ss_dssp EEEESSCG
T ss_pred EEEECCCh
Confidence 99999984
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.56 E-value=3.1e-05 Score=71.34 Aligned_cols=79 Identities=11% Similarity=0.202 Sum_probs=49.7
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
.+ |+++|||++ ++|+++++.|++.| +|++++|+..+.+++.+.+...... .. .+.+|+.+. .+.+ .++|
T Consensus 127 ~~-k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~--~~-~~~~d~~~~---~~~~--~~~D 195 (287)
T 1nvt_A 127 KD-KNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNK--KF-GEEVKFSGL---DVDL--DGVD 195 (287)
T ss_dssp CS-CEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTC--CH-HHHEEEECT---TCCC--TTCC
T ss_pred CC-CEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhccc--cc-ceeEEEeeH---HHhh--CCCC
Confidence 35 899999985 99999999999999 9999876543333333333221000 00 112333331 2223 6799
Q ss_pred EEEEcCcccC
Q 015080 148 AVMHFAAVAY 157 (413)
Q Consensus 148 vvi~~Ag~~~ 157 (413)
+||||+|...
T Consensus 196 ilVn~ag~~~ 205 (287)
T 1nvt_A 196 IIINATPIGM 205 (287)
T ss_dssp EEEECSCTTC
T ss_pred EEEECCCCCC
Confidence 9999999754
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00044 Score=64.21 Aligned_cols=114 Identities=13% Similarity=0.091 Sum_probs=69.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhc-CCCCceEEEE-ccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELF-PEPGRLQFIY-ADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~-~Dl~d~~~~~~~~~~~~~d 147 (413)
++|.|+|| |.+|..++..|+..|+ +|+++|++....+.....+.+.. .......+.. .|. +.+ .+.|
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-------~a~--~~aD 72 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-------ADT--ANSD 72 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-------GGG--TTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-------HHH--CCCC
Confidence 68999998 9999999999999997 99999875433322222222110 0011222222 332 224 6889
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
+||.++|....+ .....+....|....+.+.+.+.+.....+|.+.|
T Consensus 73 ~Vi~a~g~p~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 119 (309)
T 1ur5_A 73 VIVVTSGAPRKP--GMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 119 (309)
T ss_dssp EEEECCCC----------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence 999999864321 11223456788888899999998876555555555
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0001 Score=69.98 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=51.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH---HHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA---KAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~~d 147 (413)
++|||+||+|.||..+++.+...|++|++++++..+ .+.++++ +.. .. .|..+. +.+.+.. ..++|
T Consensus 169 ~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~----~~~~~~l---Ga~-~~--~~~~~~~~~~~~~~~~-~~g~D 237 (353)
T 4dup_A 169 ESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGK----CEACERL---GAK-RG--INYRSEDFAAVIKAET-GQGVD 237 (353)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHH---TCS-EE--EETTTSCHHHHHHHHH-SSCEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHhc---CCC-EE--EeCCchHHHHHHHHHh-CCCce
Confidence 799999999999999999999999999998864332 2233333 122 12 233332 3344443 46799
Q ss_pred EEEEcCcc
Q 015080 148 AVMHFAAV 155 (413)
Q Consensus 148 vvi~~Ag~ 155 (413)
+||+|+|.
T Consensus 238 vvid~~g~ 245 (353)
T 4dup_A 238 IILDMIGA 245 (353)
T ss_dssp EEEESCCG
T ss_pred EEEECCCH
Confidence 99999984
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00058 Score=63.62 Aligned_cols=115 Identities=19% Similarity=0.116 Sum_probs=76.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcC-CCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
++|.|+| +|.+|..++..|+..|. +|+++|++....+.....+.+... .+....+... +|. +.+ .+.|+
T Consensus 6 ~kI~iiG-aG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t--~d~----~a~--~~aDv 76 (321)
T 3p7m_A 6 KKITLVG-AGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGT--NDY----KDL--ENSDV 76 (321)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SCG----GGG--TTCSE
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEc--CCH----HHH--CCCCE
Confidence 7899999 59999999999999988 999998765433322323332110 0112222211 122 234 68899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
||.+||.... .-....+.+..|....+.+.+.+.+.... .++.+|.
T Consensus 77 VIi~ag~p~k--~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 123 (321)
T 3p7m_A 77 VIVTAGVPRK--PGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN 123 (321)
T ss_dssp EEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEEcCCcCCC--CCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 9999996432 22456678889999999999999988644 5666654
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00011 Score=69.54 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=50.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHH---HHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKA---VNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~---~~~~~~~~~~ 146 (413)
++||||||+|+||..+++.+... |++|++++++.. ..+.++++ +... . .|.++.+. +.++....++
T Consensus 172 ~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~----~~~~~~~~---g~~~-~--~~~~~~~~~~~~~~~~~~~~~ 241 (347)
T 1jvb_A 172 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE----AVEAAKRA---GADY-V--INASMQDPLAEIRRITESKGV 241 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH----HHHHHHHH---TCSE-E--EETTTSCHHHHHHHHTTTSCE
T ss_pred CEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHHHHh---CCCE-E--ecCCCccHHHHHHHHhcCCCc
Confidence 79999999999999999999999 999999876432 22233333 1221 1 34444333 4444321379
Q ss_pred cEEEEcCcc
Q 015080 147 DAVMHFAAV 155 (413)
Q Consensus 147 dvvi~~Ag~ 155 (413)
|+||+++|.
T Consensus 242 d~vi~~~g~ 250 (347)
T 1jvb_A 242 DAVIDLNNS 250 (347)
T ss_dssp EEEEESCCC
T ss_pred eEEEECCCC
Confidence 999999983
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00021 Score=65.87 Aligned_cols=37 Identities=35% Similarity=0.493 Sum_probs=30.6
Q ss_pred CCceEEEEE-cCC-----------------ChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 68 EGVTHVLVT-GGA-----------------GYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 68 ~~~k~vlIT-Gas-----------------G~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
.|.++|||| ||| |-.|.++|++++++|++|+++.+..
T Consensus 35 ~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~ 89 (313)
T 1p9o_A 35 QGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRAR 89 (313)
T ss_dssp TTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred cCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCC
Confidence 452449999 557 8899999999999999999998743
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00026 Score=62.83 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=54.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHH-hhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKF-FSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~dvv 149 (413)
++++|.|+ |.+|+.+++.|.+.|+ |++++++. +. .+.+. .++.++.+|.+|++.+.++ + .++|.|
T Consensus 10 ~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~---~~-~~~~~------~~~~~i~gd~~~~~~l~~a~i--~~ad~v 75 (234)
T 2aef_A 10 RHVVICGW-SESTLECLRELRGSEV-FVLAEDEN---VR-KKVLR------SGANFVHGDPTRVSDLEKANV--RGARAV 75 (234)
T ss_dssp CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGG---GH-HHHHH------TTCEEEESCTTCHHHHHHTTC--TTCSEE
T ss_pred CEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCH---HH-HHHHh------cCCeEEEcCCCCHHHHHhcCc--chhcEE
Confidence 68999996 9999999999999999 99886532 22 12221 2478899999999988876 5 578999
Q ss_pred EEcCc
Q 015080 150 MHFAA 154 (413)
Q Consensus 150 i~~Ag 154 (413)
|.+.+
T Consensus 76 i~~~~ 80 (234)
T 2aef_A 76 IVDLE 80 (234)
T ss_dssp EECCS
T ss_pred EEcCC
Confidence 97653
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0011 Score=62.11 Aligned_cols=116 Identities=14% Similarity=0.049 Sum_probs=72.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhh---cCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQEL---FPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
++|.|+|| |.+|..++..|+..|+ +|+++|++....+.....+.+. .....++.. . +|. ++.+ .+.
T Consensus 10 ~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t---~d~---~ea~--~~a 79 (331)
T 1pzg_A 10 KKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-E---YSY---EAAL--TGA 79 (331)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-E---CSH---HHHH--TTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-e---CCH---HHHh--CCC
Confidence 68999997 9999999999999998 9999987654333322222211 111122221 1 233 3345 688
Q ss_pred cEEEEcCcccCccCCcC---ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 147 DAVMHFAAVAYVGESTL---DPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~---~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
|+||-++|...-+.... ........|....+.+.+.+.+....-++.+.|
T Consensus 80 DiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 132 (331)
T 1pzg_A 80 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 132 (331)
T ss_dssp SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 99999998643211100 344557788888889999998875444443333
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00038 Score=63.86 Aligned_cols=115 Identities=13% Similarity=0.163 Sum_probs=75.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcC-CCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
|+|.|+|| |+||+.++..|+.++. ++.++|......+..+..+.+... .+........+ |.+ .+ .+.|
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~--d~~----~~--~~aD 71 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA--DYS----LL--KGSE 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEES--CGG----GG--TTCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCC--CHH----Hh--CCCC
Confidence 46888895 9999999999988865 899998643222222333333111 11223333221 222 23 6889
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
+||-.||...- .-.+..+.++.|..-.+.+.+.+.+.... .++.+|.
T Consensus 72 vVvitAG~prk--pGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 72 IIVVTAGLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp EEEECCCCCCC--SSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred EEEEecCCCCC--CCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 99999997542 33567889999999999999999988644 4555554
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00066 Score=63.25 Aligned_cols=114 Identities=16% Similarity=0.079 Sum_probs=73.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcC-CCCceEEE-EccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFI-YADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~-~~Dl~d~~~~~~~~~~~~~d 147 (413)
++|.|+|| |.+|..++..|+..|. +|+++|++....+.....+.+... ......+. ..| . +.+ .+.|
T Consensus 8 ~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d---~----~a~--~~aD 77 (324)
T 3gvi_A 8 NKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGAND---Y----AAI--EGAD 77 (324)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESS---G----GGG--TTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCC---H----HHH--CCCC
Confidence 78999997 9999999999999998 999998765433322223332210 00122222 233 2 234 6889
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
+||.+||...- .-....+.+..|....+.+.+.+.+.+.. .++.+|.
T Consensus 78 iVIiaag~p~k--~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 78 VVIVTAGVPRK--PGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp EEEECCSCCCC-------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEEEccCcCCC--CCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 99999986432 12234457788999999999999888643 5666654
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00012 Score=69.05 Aligned_cols=97 Identities=13% Similarity=0.092 Sum_probs=62.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHH---HHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAK---AVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~~d 147 (413)
++|||+||+|+||..+++.+...|++|++++++..+ .+.++++ +.. .. .|.++.+ .+.+.....++|
T Consensus 168 ~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~----~~~~~~~---ga~-~~--~d~~~~~~~~~~~~~~~~~~~d 237 (343)
T 2eih_A 168 DDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDK----LRRAKAL---GAD-ET--VNYTHPDWPKEVRRLTGGKGAD 237 (343)
T ss_dssp CEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHH---TCS-EE--EETTSTTHHHHHHHHTTTTCEE
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHhc---CCC-EE--EcCCcccHHHHHHHHhCCCCce
Confidence 799999999999999999999999999998764322 2233333 111 12 4665543 333333224799
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTC 197 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~ 197 (413)
+||+++| ... ....++.++. .+++|.+++.
T Consensus 238 ~vi~~~g-~~~-----------------~~~~~~~l~~--~G~~v~~g~~ 267 (343)
T 2eih_A 238 KVVDHTG-ALY-----------------FEGVIKATAN--GGRIAIAGAS 267 (343)
T ss_dssp EEEESSC-SSS-----------------HHHHHHHEEE--EEEEEESSCC
T ss_pred EEEECCC-HHH-----------------HHHHHHhhcc--CCEEEEEecC
Confidence 9999998 210 2234444443 3589988873
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=4.3e-05 Score=66.85 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=30.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
|+|+|+||+|.+|+++++.|++.|++|++++|+.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~ 34 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999998753
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00013 Score=68.84 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=49.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhh-hhcCCCCceEEEEccCCCH----HHHHHHhhcCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQ-ELFPEPGRLQFIYADLGDA----KAVNKFFSENA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~----~~~~~~~~~~~ 145 (413)
++|||+||+|+||..+++.+...|++|++++++.. ..+.++ ++ +.. . ..|.++. +.+.+.. ..+
T Consensus 157 ~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~----~~~~~~~~~---g~~-~--~~d~~~~~~~~~~~~~~~-~~~ 225 (345)
T 2j3h_A 157 ETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKE----KVDLLKTKF---GFD-D--AFNYKEESDLTAALKRCF-PNG 225 (345)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHTS---CCS-E--EEETTSCSCSHHHHHHHC-TTC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHc---CCc-e--EEecCCHHHHHHHHHHHh-CCC
Confidence 89999999999999999999999999999876432 222232 22 111 1 2355543 2333333 257
Q ss_pred CcEEEEcCc
Q 015080 146 FDAVMHFAA 154 (413)
Q Consensus 146 ~dvvi~~Ag 154 (413)
+|+||+|+|
T Consensus 226 ~d~vi~~~g 234 (345)
T 2j3h_A 226 IDIYFENVG 234 (345)
T ss_dssp EEEEEESSC
T ss_pred CcEEEECCC
Confidence 999999997
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00047 Score=63.35 Aligned_cols=115 Identities=13% Similarity=0.159 Sum_probs=75.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcC-CCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
|+|.|+|+ |.+|..++..|+..|. +|+++|++....+.....+.+... .+....+... +|. +++ .+.|
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d~----~a~--~~aD 71 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADY----SLL--KGSE 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SCG----GGG--TTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe--CCH----HHh--CCCC
Confidence 46899998 9999999999999998 999998754332211222222111 1122233222 122 234 6889
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC-CEEEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV-DTLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~iV~~SS 196 (413)
+||.+||.... .-.+..+.+..|..-.+.+.+.+.+.+. ..++.+|.
T Consensus 72 iVViaag~~~k--pG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 72 IIVVTAGLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp EEEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred EEEECCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 99999997432 2245677889999999999999998864 35666664
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00027 Score=64.68 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=53.7
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
.+ |+++|+|+ |++|++++..|++.|+ +|++++|+..+.+++.+.+..... .+.+...++.+ +.+.+ .+.
T Consensus 126 ~~-k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~---~~~i~~~~~~~---l~~~l--~~~ 195 (283)
T 3jyo_A 126 KL-DSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVG---REAVVGVDARG---IEDVI--AAA 195 (283)
T ss_dssp CC-SEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHT---SCCEEEECSTT---HHHHH--HHS
T ss_pred CC-CEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcC---CceEEEcCHHH---HHHHH--hcC
Confidence 35 89999997 9999999999999999 799988765544444444443321 22333344433 34445 457
Q ss_pred cEEEEcCccc
Q 015080 147 DAVMHFAAVA 156 (413)
Q Consensus 147 dvvi~~Ag~~ 156 (413)
|+|||+....
T Consensus 196 DiVInaTp~G 205 (283)
T 3jyo_A 196 DGVVNATPMG 205 (283)
T ss_dssp SEEEECSSTT
T ss_pred CEEEECCCCC
Confidence 9999987653
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00091 Score=62.30 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=73.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCC-CCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPE-PGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
++|.|+|| |.+|..++..|+..|. +|+++|++..+.+.....+.+..+. +..+.+.. | +. +++ .+.|
T Consensus 7 ~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~~----~a~--~~aD 76 (317)
T 3d0o_A 7 NKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G--EY----SDC--HDAD 76 (317)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C--CG----GGG--TTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C--CH----HHh--CCCC
Confidence 68999998 9999999999998884 8999986532222222222221111 12333332 2 22 234 6899
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSS 195 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~S 195 (413)
+||..||...- ........+..|....+.+.+.+.+.+.. .+|.+|
T Consensus 77 vVvi~ag~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 77 LVVICAGAAQK--PGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp EEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEEECCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 99999987432 22345667888999999999999888544 455544
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00047 Score=61.95 Aligned_cols=78 Identities=23% Similarity=0.291 Sum_probs=52.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC-------------------CCCchhhhhhhhhcCCCCceEEEEcc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-------------------RGNIGAVKVLQELFPEPGRLQFIYAD 130 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~D 130 (413)
++|+|.|+ |++|+++++.|+..|. +++++|... .+.+.+++.++++.+. -.++.+..+
T Consensus 29 ~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-~~v~~~~~~ 106 (251)
T 1zud_1 29 SQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPD-IQLTALQQR 106 (251)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTT-SEEEEECSC
T ss_pred CcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCC-CEEEEEecc
Confidence 78999995 8899999999999998 788886542 1112233444444332 345555555
Q ss_pred CCCHHHHHHHhhcCCCcEEEEcC
Q 015080 131 LGDAKAVNKFFSENAFDAVMHFA 153 (413)
Q Consensus 131 l~d~~~~~~~~~~~~~dvvi~~A 153 (413)
++ .+.+.+++ .++|+||++.
T Consensus 107 ~~-~~~~~~~~--~~~DvVi~~~ 126 (251)
T 1zud_1 107 LT-GEALKDAV--ARADVVLDCT 126 (251)
T ss_dssp CC-HHHHHHHH--HHCSEEEECC
T ss_pred CC-HHHHHHHH--hcCCEEEECC
Confidence 54 35666777 4689999874
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0025 Score=59.73 Aligned_cols=170 Identities=14% Similarity=0.105 Sum_probs=98.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-------EEEEEecCCCCC--chhhhhhhhhcCCCCceEEEEccCCCHHHHHHHh
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRGN--IGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFF 141 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-------~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 141 (413)
.+|.|+||+|+||+.|+..|++... ++.++|...... +.....+... ..+.....+..+ | ..+.+
T Consensus 25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~-~~~~~~~~~~~~--~---~~~a~ 98 (345)
T 4h7p_A 25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDC-AFPLLDKVVVTA--D---PRVAF 98 (345)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHT-TCTTEEEEEEES--C---HHHHT
T ss_pred CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhc-CccCCCcEEEcC--C---hHHHh
Confidence 6899999999999999999987642 788887532110 1112223332 111222333222 2 23445
Q ss_pred hcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-CC-EEEEeccce---ecCCCCCCCCCCCCCCCC
Q 015080 142 SENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VD-TLIYSSTCA---TYGEPEKMPITEETPQAP 216 (413)
Q Consensus 142 ~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~-~iV~~SS~~---~~~~~~~~~~~e~~~~~~ 216 (413)
.+.|+||-.||...- .-.+.++.++.|..-.+.+.+.+.+.. .. .++.+|.-. +|-.... -...+.+
T Consensus 99 --~~advVvi~aG~prk--pGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~~~----~~g~~~~ 170 (345)
T 4h7p_A 99 --DGVAIAIMCGAFPRK--AGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKS----AQGKLNP 170 (345)
T ss_dssp --TTCSEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHH----TTTCSCG
T ss_pred --CCCCEEEECCCCCCC--CCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHHHH----ccCCCCc
Confidence 689999999997532 335678899999999999999998753 33 556666411 1100000 0001122
Q ss_pred CChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 217 INPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
...-+.+-+..-++-..++++.|++...++-..|.|..
T Consensus 171 r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~H 208 (345)
T 4h7p_A 171 RHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNH 208 (345)
T ss_dssp GGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCS
T ss_pred ceeeeccchhHHHHHHHHHHHHCcChhheecceeecCC
Confidence 33334444555555555666677776666655566754
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00075 Score=62.85 Aligned_cols=114 Identities=14% Similarity=0.095 Sum_probs=75.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEE-EccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFI-YADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~d 147 (413)
++|.|+|+ |.+|+.++..|+..|. +|+++|++....+.....+.+.........+. ..|..+ + .+.|
T Consensus 22 ~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-------~--~daD 91 (330)
T 3ldh_A 22 NKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-------S--AGSK 91 (330)
T ss_dssp CEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-------C--SSCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-------h--CCCC
Confidence 78999998 9999999999999987 89999874332222222233221111122222 345432 3 6899
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
+||-+||.... .-.+..+.+..|..-.+.+.+.+.+.+.. .++.+|.
T Consensus 92 iVIitaG~p~k--pG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 92 LVVITAGARQQ--EGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE 139 (330)
T ss_dssp EEEECCSCCCC--SSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence 99999997532 22345567788999899999999887543 5555554
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00098 Score=61.80 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=73.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcC-CCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
|+|.|+|+ |.+|+.++..|+..|. +|+++|++....+.....+.+... ......+...| +. +.+ .+.|
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~~----~a~--~~aD 71 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN--DY----GPT--EDSD 71 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES--SS----GGG--TTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC--CH----HHh--CCCC
Confidence 46899996 9999999999999887 899998765433322223332110 01223333222 22 234 6899
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC-CEEEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV-DTLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~iV~~SS 196 (413)
+||.+||.... .-.+..+.+..|..-.+.+.+.+.+.+. ..++.+|.
T Consensus 72 vVii~ag~~~k--pG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 72 VCIITAGLPRS--PGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp EEEECCCC---------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred EEEECCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 99999997432 2234567888999999999999998754 35555554
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00072 Score=62.79 Aligned_cols=115 Identities=18% Similarity=0.174 Sum_probs=74.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC--CCCchhhhhhhhhcCC-CCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS--RGNIGAVKVLQELFPE-PGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~--~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
++|.|+|+ |.+|..++..|+..|. +|+++|++. ...+.....+.+..+. .....+... +|. +.+ .+.
T Consensus 9 ~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t--~d~----~a~--~~a 79 (315)
T 3tl2_A 9 KKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT--SDY----ADT--ADS 79 (315)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE--SCG----GGG--TTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc--CCH----HHh--CCC
Confidence 78999996 9999999999999999 999998752 1111111122211100 011122211 122 234 689
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
|+||-+||.... .-.+..+.+..|....+.+.+.+.+.+.. .++.+|.
T Consensus 80 DvVIiaag~p~k--pg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 80 DVVVITAGIARK--PGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp SEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 999999997432 23456778999999999999999887543 5566654
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00076 Score=62.46 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=65.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|.|+|| |.+|..++..|+..|+ +|+++|++....+.....+.+.........+... +.+ .+ .+.|+
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~---~~~----a~--~~aDv 70 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG---GHS----EL--ADAQV 70 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEE---CGG----GG--TTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEEC---CHH----Hh--CCCCE
Confidence 47899997 9999999999999999 9999987532211111111111110112222222 222 34 68899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
||.+++....+ .....+.+..|....+.+++.+.+.... .+|.+|.
T Consensus 71 VIi~~~~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tN 117 (304)
T 2v6b_A 71 VILTAGANQKP--GESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSN 117 (304)
T ss_dssp EEECC--------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSS
T ss_pred EEEcCCCCCCC--CCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 99999864211 1223445678888889999988876543 4455443
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00021 Score=66.02 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=50.8
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
.+ ++|+|+|+ |++|++++..|++.|+ +|++++|+.. ++.+...+.... .. ++.+.+++.+.+ .++
T Consensus 140 ~~-~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~---ka~~la~~~~~~-~~------~~~~~~~~~~~~--~~a 205 (297)
T 2egg_A 140 DG-KRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVE---KAERLVREGDER-RS------AYFSLAEAETRL--AEY 205 (297)
T ss_dssp TT-CEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHH---HHHHHHHHSCSS-SC------CEECHHHHHHTG--GGC
T ss_pred CC-CEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHH---HHHHHHHHhhhc-cC------ceeeHHHHHhhh--ccC
Confidence 35 89999996 8999999999999998 8999876432 222222222111 00 122334566666 578
Q ss_pred cEEEEcCcccC
Q 015080 147 DAVMHFAAVAY 157 (413)
Q Consensus 147 dvvi~~Ag~~~ 157 (413)
|+||++.+...
T Consensus 206 DivIn~t~~~~ 216 (297)
T 2egg_A 206 DIIINTTSVGM 216 (297)
T ss_dssp SEEEECSCTTC
T ss_pred CEEEECCCCCC
Confidence 99999998643
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0001 Score=73.79 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=44.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
+.+ |+++|||| |++|++++..|++.|++|++++|+..+ +.+...++ + ..+. ++.| +.++ ....+
T Consensus 362 l~~-k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~---a~~la~~~-~--~~~~----~~~d---l~~~-~~~~~ 425 (523)
T 2o7s_A 362 LAS-KTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYER---ALELAEAI-G--GKAL----SLTD---LDNY-HPEDG 425 (523)
T ss_dssp -----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHH---HHHHHHHT-T--C-CE----ETTT---TTTC---CCS
T ss_pred cCC-CEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHc-C--Ccee----eHHH---hhhc-cccCc
Confidence 345 88999998 799999999999999999998875332 22222222 1 1221 1212 1111 01358
Q ss_pred cEEEEcCccc
Q 015080 147 DAVMHFAAVA 156 (413)
Q Consensus 147 dvvi~~Ag~~ 156 (413)
|+||||+|+.
T Consensus 426 DilVN~agvg 435 (523)
T 2o7s_A 426 MVLANTTSMG 435 (523)
T ss_dssp EEEEECSSTT
T ss_pred eEEEECCCCC
Confidence 9999999974
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00033 Score=66.68 Aligned_cols=97 Identities=19% Similarity=0.126 Sum_probs=61.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH---HHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA---KAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~~d 147 (413)
++|||+||+|+||..+++.+...|++|++++++. +..+.++++ +.. .. .|..+. +.+.+.. ..++|
T Consensus 165 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~----~~~~~~~~~---Ga~-~~--~~~~~~~~~~~~~~~~-~~g~D 233 (362)
T 2c0c_A 165 KKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSD----EKSAFLKSL---GCD-RP--INYKTEPVGTVLKQEY-PEGVD 233 (362)
T ss_dssp CEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHT---TCS-EE--EETTTSCHHHHHHHHC-TTCEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCH----HHHHHHHHc---CCc-EE--EecCChhHHHHHHHhc-CCCCC
Confidence 7999999999999999999999999999987642 222333333 122 12 233332 2222222 24799
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
+||+|+|.. .....++.++. .+++|.+++..
T Consensus 234 ~vid~~g~~------------------~~~~~~~~l~~--~G~iv~~g~~~ 264 (362)
T 2c0c_A 234 VVYESVGGA------------------MFDLAVDALAT--KGRLIVIGFIS 264 (362)
T ss_dssp EEEECSCTH------------------HHHHHHHHEEE--EEEEEECCCGG
T ss_pred EEEECCCHH------------------HHHHHHHHHhc--CCEEEEEeCCC
Confidence 999999720 12234444443 35899988754
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00067 Score=63.94 Aligned_cols=100 Identities=18% Similarity=0.186 Sum_probs=60.0
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCC-----C-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhh
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDS-----Y-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFS 142 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G-----~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 142 (413)
.|++|.|.||||.+|++|++.|.+++ . +|+.+.+..............+... ..+.+ .|+ +.++ +
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~-~~~~~--~~~-~~~~----~- 78 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPL-AHRVV--EPT-EAAV----L- 78 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGG-TTCBC--EEC-CHHH----H-
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhccccccc-ceeee--ccC-CHHH----h-
Confidence 35799999999999999999999988 4 6776653221111111111111000 12222 222 2322 3
Q ss_pred cCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 143 ENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 143 ~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
.++|+||.|+|... +..+++.+ +.|. ++|-+|+..
T Consensus 79 -~~~DvVf~alg~~~------------------s~~~~~~~-~~G~-~vIDlSa~~ 113 (352)
T 2nqt_A 79 -GGHDAVFLALPHGH------------------SAVLAQQL-SPET-LIIDCGADF 113 (352)
T ss_dssp -TTCSEEEECCTTSC------------------CHHHHHHS-CTTS-EEEECSSTT
T ss_pred -cCCCEEEECCCCcc------------------hHHHHHHH-hCCC-EEEEECCCc
Confidence 47899999987431 34577777 6664 899999864
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0009 Score=62.31 Aligned_cols=114 Identities=14% Similarity=0.154 Sum_probs=70.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
++|.|+|| |.+|..++..|+..+. +|+++|+...+.+.....+.+..+....+.+.. | +. +.+ .+.|+
T Consensus 6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~--~~----~a~--~~aDv 75 (318)
T 1ez4_A 6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G--EY----SDC--KDADL 75 (318)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C--CG----GGG--TTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C--CH----HHh--CCCCE
Confidence 68999998 9999999999998876 899998743333322223332211112333332 2 22 234 68999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC-CEEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV-DTLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~iV~~SS 196 (413)
||..||...-+ -....+.+..|+...+.+.+.+.+.+. ..+|.+|.
T Consensus 76 Vii~ag~~~~~--g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 122 (318)
T 1ez4_A 76 VVITAGAPQKP--GESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (318)
T ss_dssp EEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred EEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 99999874321 123345678899999999999988753 45666544
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0016 Score=60.45 Aligned_cols=114 Identities=17% Similarity=0.082 Sum_probs=74.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|.|+|| |.+|..++..|+..+ .+|+++|++..+.+.....+.+.......+.+.. | +.+ .+ .+.|+
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~--~~~----a~--~~aD~ 70 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-G--SYG----DL--EGARA 70 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-C--CGG----GG--TTEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-C--CHH----Hh--CCCCE
Confidence 47999997 999999999999987 5899998753222222222222111112333333 2 332 24 68899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC-CEEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV-DTLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~iV~~SS 196 (413)
||..||...- .-.........|....+.+.+.+.+.+. ..+|.+|.
T Consensus 71 Vii~ag~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (310)
T 2xxj_A 71 VVLAAGVAQR--PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN 117 (310)
T ss_dssp EEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEECCCCCCC--CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 9999987432 2234566788899999999999988753 45666544
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0014 Score=61.19 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=73.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
++|.|+|| |.+|..++..|+..+. +|+++|+...+.+.....+.+..+....+.+.. | +.+ .+ .+.|+
T Consensus 10 ~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~--~~~----a~--~~aDv 79 (326)
T 2zqz_A 10 QKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A--EYS----DA--KDADL 79 (326)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C--CGG----GG--GGCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C--CHH----Hh--CCCCE
Confidence 68999998 9999999999998876 899998743322222222222211112333332 2 222 24 67899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VDTLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~iV~~SS 196 (413)
||..||...- .-......+..|+...+.+.+.+.+.+ -..+|.+|.
T Consensus 80 Vii~ag~~~k--~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 126 (326)
T 2zqz_A 80 VVITAGAPQK--PGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp EEECCCCC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred EEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 9999986432 223455678889999999999998875 346666644
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00025 Score=67.43 Aligned_cols=77 Identities=21% Similarity=0.237 Sum_probs=53.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
+.+ ++|+|+|+ |.+|..+++.|...|++|++++|+..+.+. +.+... ..+. .+..+.+++.+.+ .++
T Consensus 165 l~~-~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~----~~~~~~--~~~~---~~~~~~~~~~~~~--~~~ 231 (361)
T 1pjc_A 165 VKP-GKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSY----LETLFG--SRVE---LLYSNSAEIETAV--AEA 231 (361)
T ss_dssp BCC-CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH----HHHHHG--GGSE---EEECCHHHHHHHH--HTC
T ss_pred CCC-CEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHH----HHHhhC--ceeE---eeeCCHHHHHHHH--cCC
Confidence 445 89999998 999999999999999999999875433222 222211 1121 1223556666666 478
Q ss_pred cEEEEcCccc
Q 015080 147 DAVMHFAAVA 156 (413)
Q Consensus 147 dvvi~~Ag~~ 156 (413)
|+||++++..
T Consensus 232 DvVI~~~~~~ 241 (361)
T 1pjc_A 232 DLLIGAVLVP 241 (361)
T ss_dssp SEEEECCCCT
T ss_pred CEEEECCCcC
Confidence 9999999864
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00091 Score=64.64 Aligned_cols=72 Identities=14% Similarity=0.261 Sum_probs=56.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHH-hhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKF-FSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~dvv 149 (413)
++|+|.|. |-+|+.+++.|.+.|++|++++++.. ..+.+.. .++.++.+|.++++.+.++ + .++|+|
T Consensus 5 ~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~----~v~~~~~-----~g~~vi~GDat~~~~L~~agi--~~A~~v 72 (413)
T 3l9w_A 5 MRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPD----HIETLRK-----FGMKVFYGDATRMDLLESAGA--AKAEVL 72 (413)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHH----HHHHHHH-----TTCCCEESCTTCHHHHHHTTT--TTCSEE
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHH----HHHHHHh-----CCCeEEEcCCCCHHHHHhcCC--CccCEE
Confidence 67999995 99999999999999999999986432 2222222 3577889999999988877 4 578999
Q ss_pred EEcCc
Q 015080 150 MHFAA 154 (413)
Q Consensus 150 i~~Ag 154 (413)
|-+.+
T Consensus 73 iv~~~ 77 (413)
T 3l9w_A 73 INAID 77 (413)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 86653
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0028 Score=59.25 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=60.8
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCC---CCCchhhhhhhhhcCCCCceEEEEc-cCCCHHHHHHHhhcC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLS---RGNIGAVKVLQELFPEPGRLQFIYA-DLGDAKAVNKFFSEN 144 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~~-Dl~d~~~~~~~~~~~ 144 (413)
|++|.|.||||.+|.+|++.|.++ .+++..+.... .......+....+... .+..+... |. + +++ .
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~-~~~~v~~~~~~---~---~~~--~ 74 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGI-VELPLQPMSDI---S---EFS--P 74 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTT-CCCBEEEESSG---G---GTC--T
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCc-cceeEeccCCH---H---HHh--c
Confidence 589999999999999999999985 55777665433 1112222222222111 12333222 21 1 222 4
Q ss_pred CCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 145 AFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
++|+||.|.+.. .++.+++.+.+.|. ++|-.|+..
T Consensus 75 ~~Dvvf~a~p~~------------------~s~~~~~~~~~~g~-~vIDlSa~f 109 (337)
T 3dr3_A 75 GVDVVFLATAHE------------------VSHDLAPQFLEAGC-VVFDLSGAF 109 (337)
T ss_dssp TCSEEEECSCHH------------------HHHHHHHHHHHTTC-EEEECSSTT
T ss_pred CCCEEEECCChH------------------HHHHHHHHHHHCCC-EEEEcCCcc
Confidence 789999887621 24556667777776 788888854
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00057 Score=63.15 Aligned_cols=72 Identities=19% Similarity=0.158 Sum_probs=49.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
++|||+||+|.+|..++..+...|++|++++++..+.+ .++++ +.. . ..|..+.+++.+.+ .++|+||
T Consensus 127 ~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~----~~~~~---ga~--~-~~~~~~~~~~~~~~--~~~d~vi 194 (302)
T 1iz0_A 127 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA----LPLAL---GAE--E-AATYAEVPERAKAW--GGLDLVL 194 (302)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH----HHHHT---TCS--E-EEEGGGHHHHHHHT--TSEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHHhc---CCC--E-EEECCcchhHHHHh--cCceEEE
Confidence 79999999999999999999999999999987543332 22232 111 1 13555513343444 6899999
Q ss_pred EcCcc
Q 015080 151 HFAAV 155 (413)
Q Consensus 151 ~~Ag~ 155 (413)
+ +|.
T Consensus 195 d-~g~ 198 (302)
T 1iz0_A 195 E-VRG 198 (302)
T ss_dssp E-CSC
T ss_pred E-CCH
Confidence 9 873
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00061 Score=64.30 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=49.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC--HHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD--AKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~dv 148 (413)
++|||+||+|.||...+..+...|++|++++++. +..+.++++. .. ..+ |..+ .+.+.+. ...++|+
T Consensus 152 ~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~----~~~~~~~~lG---a~-~vi--~~~~~~~~~~~~~-~~~g~Dv 220 (346)
T 3fbg_A 152 KTLLIINGAGGVGSIATQIAKAYGLRVITTASRN----ETIEWTKKMG---AD-IVL--NHKESLLNQFKTQ-GIELVDY 220 (346)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSH----HHHHHHHHHT---CS-EEE--CTTSCHHHHHHHH-TCCCEEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCH----HHHHHHHhcC---Cc-EEE--ECCccHHHHHHHh-CCCCccE
Confidence 7999999999999999999999999999987532 2233344431 11 122 2222 2334443 3357999
Q ss_pred EEEcCc
Q 015080 149 VMHFAA 154 (413)
Q Consensus 149 vi~~Ag 154 (413)
||+++|
T Consensus 221 v~d~~g 226 (346)
T 3fbg_A 221 VFCTFN 226 (346)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 999987
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00076 Score=61.39 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=48.7
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
.+ |+++|+|+ |++|++++..|++.|++|++++|+..+.+++.+.+... ..+.. .|+ ++ +.+ .++|
T Consensus 118 ~~-~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~----~~~~~--~~~---~~---~~~-~~~D 182 (272)
T 1p77_A 118 PN-QHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY----GNIQA--VSM---DS---IPL-QTYD 182 (272)
T ss_dssp TT-CEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG----SCEEE--EEG---GG---CCC-SCCS
T ss_pred CC-CEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcccc----CCeEE--eeH---HH---hcc-CCCC
Confidence 35 89999997 89999999999999999999987544333333332211 12222 333 11 111 3789
Q ss_pred EEEEcCccc
Q 015080 148 AVMHFAAVA 156 (413)
Q Consensus 148 vvi~~Ag~~ 156 (413)
+|||+++..
T Consensus 183 ivIn~t~~~ 191 (272)
T 1p77_A 183 LVINATSAG 191 (272)
T ss_dssp EEEECCCC-
T ss_pred EEEECCCCC
Confidence 999999864
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00049 Score=67.39 Aligned_cols=32 Identities=25% Similarity=0.160 Sum_probs=30.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEec
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 102 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r 102 (413)
++|||+||+|.||..++..+...|++|+++++
T Consensus 222 ~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~ 253 (447)
T 4a0s_A 222 DIVLIWGASGGLGSYAIQFVKNGGGIPVAVVS 253 (447)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence 89999999999999999999999999998875
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0023 Score=59.48 Aligned_cols=114 Identities=16% Similarity=0.214 Sum_probs=71.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcC-CCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
++|.|+|+ |.+|..++..|+..|. +|+++|++....+.....+.+... .+..+.+.. | +. +.+ .+.|
T Consensus 7 ~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~--~~----~al--~~aD 76 (316)
T 1ldn_A 7 ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G--DY----DDC--RDAD 76 (316)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C--CG----GGT--TTCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C--cH----HHh--CCCC
Confidence 78999998 9999999999988774 899998754322222222222211 111344332 2 22 234 6899
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
+||.++++...+. ....+.+..|....+.+.+.+.+.... .++.+|.
T Consensus 77 vViia~~~~~~~g--~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN 124 (316)
T 1ldn_A 77 LVVICAGANQKPG--ETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN 124 (316)
T ss_dssp EEEECCSCCCCTT--TCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred EEEEcCCCCCCCC--CCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 9999998754322 123445677888888899988887543 4444443
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0029 Score=57.48 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=26.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-CCEEE-EEec
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-SYRVT-IVDN 102 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G~~V~-~~~r 102 (413)
++|.|+|++|.+|+.+++.+.+. |++|+ ++++
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~ 39 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALER 39 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECC
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 78999999999999999998754 77877 4444
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00072 Score=63.76 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=49.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC-HHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD-AKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~dvv 149 (413)
++|||+||+|.||..++..+...|++|+++ ++.. ..+.++++ + +..+. +-.+ .+.+.+.....++|++
T Consensus 152 ~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~----~~~~~~~l---G--a~~i~-~~~~~~~~~~~~~~~~g~D~v 220 (343)
T 3gaz_A 152 QTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGS----DLEYVRDL---G--ATPID-ASREPEDYAAEHTAGQGFDLV 220 (343)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHH----HHHHHHHH---T--SEEEE-TTSCHHHHHHHHHTTSCEEEE
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHH----HHHHHHHc---C--CCEec-cCCCHHHHHHHHhcCCCceEE
Confidence 799999999999999999999999999887 3222 23334443 2 22222 2222 2334444433579999
Q ss_pred EEcCc
Q 015080 150 MHFAA 154 (413)
Q Consensus 150 i~~Ag 154 (413)
|+++|
T Consensus 221 id~~g 225 (343)
T 3gaz_A 221 YDTLG 225 (343)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 99998
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00063 Score=64.76 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=51.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC--HHHHHHHhhcC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD--AKAVNKFFSEN 144 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~ 144 (413)
+.+ ++|||+|| |+||..+++.+...|++|++++++... .+..+.++++ ++..+ | .+ .+.+.+ .. .
T Consensus 179 ~~g-~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~-~~~~~~~~~~-----ga~~v--~-~~~~~~~~~~-~~-~ 245 (366)
T 2cdc_A 179 LNC-RKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPT-EVEQTVIEET-----KTNYY--N-SSNGYDKLKD-SV-G 245 (366)
T ss_dssp STT-CEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCC-HHHHHHHHHH-----TCEEE--E-CTTCSHHHHH-HH-C
T ss_pred CCC-CEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccc-hHHHHHHHHh-----CCcee--c-hHHHHHHHHH-hC-C
Confidence 346 89999999 999999999999999999999865411 1122333333 23333 4 44 233444 22 6
Q ss_pred CCcEEEEcCcc
Q 015080 145 AFDAVMHFAAV 155 (413)
Q Consensus 145 ~~dvvi~~Ag~ 155 (413)
++|+||+++|.
T Consensus 246 ~~d~vid~~g~ 256 (366)
T 2cdc_A 246 KFDVIIDATGA 256 (366)
T ss_dssp CEEEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999984
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0012 Score=63.04 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=49.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
++|||+||+|.||..++..+...|++|+++++ .. ..+.++++ +.. .. .|..+.+..+++.+..++|+||
T Consensus 185 ~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~----~~~~~~~l---Ga~-~v--~~~~~~~~~~~~~~~~g~D~vi 253 (375)
T 2vn8_A 185 KRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QD----ASELVRKL---GAD-DV--IDYKSGSVEEQLKSLKPFDFIL 253 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GG----GHHHHHHT---TCS-EE--EETTSSCHHHHHHTSCCBSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hH----HHHHHHHc---CCC-EE--EECCchHHHHHHhhcCCCCEEE
Confidence 79999999999999999999999999988763 21 22333333 111 12 2444433333443335799999
Q ss_pred EcCcc
Q 015080 151 HFAAV 155 (413)
Q Consensus 151 ~~Ag~ 155 (413)
+++|.
T Consensus 254 d~~g~ 258 (375)
T 2vn8_A 254 DNVGG 258 (375)
T ss_dssp ESSCT
T ss_pred ECCCC
Confidence 99983
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00013 Score=59.56 Aligned_cols=70 Identities=14% Similarity=0.312 Sum_probs=46.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
++|+|.|+ |.+|+.+++.|.+.|++|++++|+..+ ..+...+. +.... +..+ +.+++ .++|+||
T Consensus 22 ~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~---~~~~a~~~-----~~~~~--~~~~---~~~~~--~~~Divi 85 (144)
T 3oj0_A 22 NKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDH---VRAFAEKY-----EYEYV--LIND---IDSLI--KNNDVII 85 (144)
T ss_dssp CEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHH---HHHHHHHH-----TCEEE--ECSC---HHHHH--HTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHH---HHHHHHHh-----CCceE--eecC---HHHHh--cCCCEEE
Confidence 79999995 999999999999999998888765332 22222222 12222 2223 34455 4689999
Q ss_pred EcCccc
Q 015080 151 HFAAVA 156 (413)
Q Consensus 151 ~~Ag~~ 156 (413)
.+.+..
T Consensus 86 ~at~~~ 91 (144)
T 3oj0_A 86 TATSSK 91 (144)
T ss_dssp ECSCCS
T ss_pred EeCCCC
Confidence 988754
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00041 Score=63.15 Aligned_cols=70 Identities=14% Similarity=0.123 Sum_probs=48.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
+.+ |+++|+|+ |++|++++..|++.|+ +|++++|+..+.+++. ..+.. ...+++.+++ .+
T Consensus 115 l~~-k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la----------~~~~~-----~~~~~~~~~~--~~ 175 (277)
T 3don_A 115 IED-AYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNWS----------LNINK-----INLSHAESHL--DE 175 (277)
T ss_dssp GGG-CCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCC----------SCCEE-----ECHHHHHHTG--GG
T ss_pred cCC-CEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH----------Hhccc-----ccHhhHHHHh--cC
Confidence 345 89999996 9999999999999999 8999877544332221 11221 1345566656 56
Q ss_pred CcEEEEcCcc
Q 015080 146 FDAVMHFAAV 155 (413)
Q Consensus 146 ~dvvi~~Ag~ 155 (413)
.|+|||+...
T Consensus 176 aDiVInaTp~ 185 (277)
T 3don_A 176 FDIIINTTPA 185 (277)
T ss_dssp CSEEEECCC-
T ss_pred CCEEEECccC
Confidence 8999998654
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00079 Score=64.34 Aligned_cols=78 Identities=24% Similarity=0.211 Sum_probs=54.7
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
.+.+ ++|+|+|+ |.||..+++.+...|++|++++++..+ .+.+.+..+ ..+ ..+..+.+++.+++ .+
T Consensus 165 ~l~g-~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~----l~~~~~~~g--~~~---~~~~~~~~~l~~~l--~~ 231 (377)
T 2vhw_A 165 GVEP-ADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDK----LRQLDAEFC--GRI---HTRYSSAYELEGAV--KR 231 (377)
T ss_dssp TBCC-CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHTT--TSS---EEEECCHHHHHHHH--HH
T ss_pred CCCC-CEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHH----HHHHHHhcC--Cee---EeccCCHHHHHHHH--cC
Confidence 3556 89999997 999999999999999999999864322 222222111 122 23445666777777 46
Q ss_pred CcEEEEcCccc
Q 015080 146 FDAVMHFAAVA 156 (413)
Q Consensus 146 ~dvvi~~Ag~~ 156 (413)
+|+||++++..
T Consensus 232 aDvVi~~~~~p 242 (377)
T 2vhw_A 232 ADLVIGAVLVP 242 (377)
T ss_dssp CSEEEECCCCT
T ss_pred CCEEEECCCcC
Confidence 89999998753
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0053 Score=57.19 Aligned_cols=116 Identities=10% Similarity=0.070 Sum_probs=70.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcC-CCCceEEEE-ccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIY-ADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~-~Dl~d~~~~~~~~~~~~~d 147 (413)
++|.|+|| |.+|..++..|+..|. +|+++|++....+.....+.+... ......+.. .|+ +.+ .+.|
T Consensus 5 ~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-------~al--~~aD 74 (322)
T 1t2d_A 5 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-------DDL--AGAD 74 (322)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-------GGG--TTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-------HHh--CCCC
Confidence 68999997 9999999999999998 999998764433322222222100 011222222 332 234 6899
Q ss_pred EEEEcCcccCccCCc---CChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 148 AVMHFAAVAYVGEST---LDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~---~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
+||.++|...-+... ....+....|....+.+.+.+.+.... .+|.+|.
T Consensus 75 ~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 127 (322)
T 1t2d_A 75 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 127 (322)
T ss_dssp EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999864211100 003345677888888888888877533 4555543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0013 Score=62.66 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=62.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
++|||+|+ |.||..+++.+...|++|++++++..+.+ ...+++ +.. . ..|..+.+.+.++. .++|+||
T Consensus 189 ~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~---~~~~~l---Ga~-~--v~~~~~~~~~~~~~--~~~D~vi 256 (366)
T 1yqd_A 189 KHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKE---EALKNF---GAD-S--FLVSRDQEQMQAAA--GTLDGII 256 (366)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHH---HHHHTS---CCS-E--EEETTCHHHHHHTT--TCEEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHhc---CCc-e--EEeccCHHHHHHhh--CCCCEEE
Confidence 79999996 99999999999999999999876433221 111122 111 1 24666777776665 5899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
+++|.... ....++.++. .+++|.+++
T Consensus 257 d~~g~~~~-----------------~~~~~~~l~~--~G~iv~~g~ 283 (366)
T 1yqd_A 257 DTVSAVHP-----------------LLPLFGLLKS--HGKLILVGA 283 (366)
T ss_dssp ECCSSCCC-----------------SHHHHHHEEE--EEEEEECCC
T ss_pred ECCCcHHH-----------------HHHHHHHHhc--CCEEEEEcc
Confidence 99984210 1123444433 358999887
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0045 Score=57.59 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=70.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|.|.|+ |.+|..++..|++.|+ +|++++++....+.....+.+.........+.. +|.+ .+ .++|+
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~d~~----~~--~~aDv 70 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA---GDYA----DL--KGSDV 70 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE---CCGG----GG--TTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe---CCHH----Hh--CCCCE
Confidence 46899997 9999999999999999 999998753322222222221110001122222 2322 24 67899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
||-+++.... ......+....|....+.+++.+.+.... .+|.+|.
T Consensus 71 Viiav~~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tN 117 (319)
T 1a5z_A 71 VIVAAGVPQK--PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN 117 (319)
T ss_dssp EEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 9999875431 11235566778888888999998876433 5555543
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0098 Score=55.06 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=71.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC--CCEEEEEecCCCCCchhhhhhhhhcC-CCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
|+|.|+|+ |.+|..++..|++. |++|++++++....+.....+.+... ......+... +|.+ + + .+.|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t--~d~~---~-l--~~aD 71 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDYA---D-T--ANSD 71 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCGG---G-G--TTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEEC--CCHH---H-H--CCCC
Confidence 46889997 99999999999985 78999999865433322211111100 0011122111 2222 2 3 6889
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC-CEEEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV-DTLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~iV~~SS 196 (413)
+||-+++... .......+.+..|....+.+.+.+.+... ..+|.+|.
T Consensus 72 vViiav~~p~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN 119 (310)
T 1guz_A 72 IVIITAGLPR--KPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN 119 (310)
T ss_dssp EEEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred EEEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 9999987532 11223566788899999999999887753 35555543
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0055 Score=56.95 Aligned_cols=114 Identities=13% Similarity=0.084 Sum_probs=69.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|.|.|+ |.+|..++..|+..|+ +|++++++....+.....+.+.........+... ++.+ .+ .++|+
T Consensus 8 mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~----~~--~~aD~ 78 (319)
T 1lld_A 8 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDPE----IC--RDADM 78 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCGG----GG--TTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeC--CCHH----Hh--CCCCE
Confidence 78999997 9999999999999999 9999987532211101111111100012222221 1222 23 57899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSS 195 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~S 195 (413)
||-+++.... ...........|....+.+++.+.+.+.. .+|.++
T Consensus 79 Vii~v~~~~~--~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~ 124 (319)
T 1lld_A 79 VVITAGPRQK--PGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 124 (319)
T ss_dssp EEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred EEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence 9999875322 12345667788888888888888776433 444443
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0047 Score=58.10 Aligned_cols=98 Identities=14% Similarity=0.081 Sum_probs=59.1
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|++|.|.||+|.||+.+++.|.++.. +++.+.+..............+... .. ..+.+.+ + + .++|+
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~-~~-----~~~~~~~---~-~--~~vDv 71 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGR-TN-----LKFVPPE---K-L--EPADI 71 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTT-CC-----CBCBCGG---G-C--CCCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCc-cc-----ccccchh---H-h--cCCCE
Confidence 47899999999999999999998765 7777654222221111111111110 11 1122222 2 3 47999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
||.+++... +..+++.+.+.|. ++|-.|+..
T Consensus 72 V~~a~g~~~------------------s~~~a~~~~~aG~-~VId~Sa~~ 102 (345)
T 2ozp_A 72 LVLALPHGV------------------FAREFDRYSALAP-VLVDLSADF 102 (345)
T ss_dssp EEECCCTTH------------------HHHTHHHHHTTCS-EEEECSSTT
T ss_pred EEEcCCcHH------------------HHHHHHHHHHCCC-EEEEcCccc
Confidence 999987421 3456666777775 788888843
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0094 Score=56.34 Aligned_cols=170 Identities=11% Similarity=0.022 Sum_probs=95.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-----EEEEEecCCCCCch-hhhhhhhhcC-CCCceEEEEccCCCHHHHHHHhhc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-----RVTIVDNLSRGNIG-AVKVLQELFP-EPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-----~V~~~~r~~~~~~~-~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
.+|.|+||+|.||++++-.|+..+. .|.+.+......+. +.....++.. ...-..-+..- ++ -.+.+
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~-~~---~y~~~-- 106 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG-ID---PYEVF-- 106 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE-SC---HHHHT--
T ss_pred CEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEe-cC---CHHHh--
Confidence 7899999999999999999998854 26665543333221 2222222211 10111111111 11 12334
Q ss_pred CCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-C-CCEEEEeccce---ecCCCCCCCCCCCCC-CCCC
Q 015080 144 NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-G-VDTLIYSSTCA---TYGEPEKMPITEETP-QAPI 217 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~-~~~iV~~SS~~---~~~~~~~~~~~e~~~-~~~~ 217 (413)
.+.|+||-.||... ..-.+..+.++.|..-.+.+.+.+.+. + -..++.+|.-. +|-.. ...+ +++.
T Consensus 107 ~daDvVVitag~pr--kpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia~------k~sg~~~~r 178 (375)
T 7mdh_A 107 EDVDWALLIGAKPR--GPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICL------KNAPDIPAK 178 (375)
T ss_dssp TTCSEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHH------HTCTTSCGG
T ss_pred CCCCEEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH------HHcCCCCcc
Confidence 68999999999643 223567789999999999999999875 3 34666666511 11000 0000 1111
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCC
Q 015080 218 NPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~ 254 (413)
..-+.+-+..-++-..++++.|++...++--+|.|..
T Consensus 179 vig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeH 215 (375)
T 7mdh_A 179 NFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNH 215 (375)
T ss_dssp GEEECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCS
T ss_pred EEEeeehHHHHHHHHHHHHHhCcChhhcccceEEecC
Confidence 2223333444555555666677766555533677754
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0017 Score=59.32 Aligned_cols=74 Identities=12% Similarity=0.231 Sum_probs=49.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
+.+ |+++|+|+ |++|++++..|++.|+ +|++++|+..+.+++.+.+... ..+.....+ + +. .+
T Consensus 124 l~~-k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~----~~~~~~~~~--~------l~--~~ 187 (281)
T 3o8q_A 124 LKG-ATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAY----GEVKAQAFE--Q------LK--QS 187 (281)
T ss_dssp CTT-CEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGG----SCEEEEEGG--G------CC--SC
T ss_pred ccC-CEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhcc----CCeeEeeHH--H------hc--CC
Confidence 345 89999996 8999999999999996 9999987654434344333321 124443221 1 11 46
Q ss_pred CcEEEEcCccc
Q 015080 146 FDAVMHFAAVA 156 (413)
Q Consensus 146 ~dvvi~~Ag~~ 156 (413)
.|+|||+-...
T Consensus 188 aDiIInaTp~g 198 (281)
T 3o8q_A 188 YDVIINSTSAS 198 (281)
T ss_dssp EEEEEECSCCC
T ss_pred CCEEEEcCcCC
Confidence 89999987643
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0017 Score=61.42 Aligned_cols=78 Identities=21% Similarity=0.203 Sum_probs=57.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCC-------------------CCchhhhhhhhhcCCCCceEEEEcc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSR-------------------GNIGAVKVLQELFPEPGRLQFIYAD 130 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 130 (413)
++|+|.|+ |++|+++++.|+..|. +++++|...- +.+.+.+.+.++.+. -.++.+..+
T Consensus 119 ~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-v~v~~~~~~ 196 (353)
T 3h5n_A 119 AKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSE-ISVSEIALN 196 (353)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT-SEEEEEECC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCC-CeEEEeecc
Confidence 78999995 9999999999999998 7899886531 122344455555443 467778888
Q ss_pred CCCHHHHHHHhhcCCCcEEEEcC
Q 015080 131 LGDAKAVNKFFSENAFDAVMHFA 153 (413)
Q Consensus 131 l~d~~~~~~~~~~~~~dvvi~~A 153 (413)
+++..++.+ + .++|+||.+.
T Consensus 197 i~~~~~~~~-~--~~~DlVvd~~ 216 (353)
T 3h5n_A 197 INDYTDLHK-V--PEADIWVVSA 216 (353)
T ss_dssp CCSGGGGGG-S--CCCSEEEECC
T ss_pred cCchhhhhH-h--ccCCEEEEec
Confidence 877664555 5 6899999875
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0015 Score=64.15 Aligned_cols=32 Identities=28% Similarity=0.267 Sum_probs=29.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEec
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 102 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r 102 (413)
.+|||+||+|.||...+..+...|++|+++++
T Consensus 230 ~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~ 261 (456)
T 3krt_A 230 DNVLIWGASGGLGSYATQFALAGGANPICVVS 261 (456)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 79999999999999999999999999998875
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0016 Score=60.78 Aligned_cols=73 Identities=23% Similarity=0.278 Sum_probs=46.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH--HHHHHHhhcCCCcEE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA--KAVNKFFSENAFDAV 149 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~--~~~~~~~~~~~~dvv 149 (413)
+|||+||+|.+|..++..+...|++|++++++..+.+ .++++ +.. .. .|..+. +.+.+ +...++|+|
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~----~~~~l---Ga~-~~--i~~~~~~~~~~~~-~~~~~~d~v 220 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHD----YLRVL---GAK-EV--LAREDVMAERIRP-LDKQRWAAA 220 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHH----HHHHT---TCS-EE--EECC----------CCSCCEEEE
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH----HHHHc---CCc-EE--EecCCcHHHHHHH-hcCCcccEE
Confidence 7999999999999999999999999999887544322 22332 111 12 244433 12222 222479999
Q ss_pred EEcCcc
Q 015080 150 MHFAAV 155 (413)
Q Consensus 150 i~~Ag~ 155 (413)
|+++|.
T Consensus 221 id~~g~ 226 (328)
T 1xa0_A 221 VDPVGG 226 (328)
T ss_dssp EECSTT
T ss_pred EECCcH
Confidence 999983
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.015 Score=53.62 Aligned_cols=111 Identities=16% Similarity=0.166 Sum_probs=72.0
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
.|++|.|+|| |.+|..++..|+..|. +|+++|++.. .......+..... .++.. ..|+ + .+ .+.
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~-~~g~a~dl~~~~~--~~i~~-t~d~---~----~l--~~a 78 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEG-TKGATMDLEIFNL--PNVEI-SKDL---S----AS--AHS 78 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC------CHHHHHHHTC--TTEEE-ESCG---G----GG--TTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcc-hHHHHHHHhhhcC--CCeEE-eCCH---H----HH--CCC
Confidence 3478999995 9999999999999998 9999998654 2222222223211 24443 2332 2 24 689
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
|+||-.+|...+ -....+....|..-.+.+.+.+.+.... .++.+|.
T Consensus 79 D~Vi~aag~~~p---G~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN 126 (303)
T 2i6t_A 79 KVVIFTVNSLGS---SQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126 (303)
T ss_dssp SEEEECCCC-------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred CEEEEcCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 999999997422 2345667888888899999999886543 4455554
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0035 Score=59.03 Aligned_cols=107 Identities=19% Similarity=0.249 Sum_probs=67.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC-------------------CCCchhhhhhhhhcCCCCceEEEEcc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-------------------RGNIGAVKVLQELFPEPGRLQFIYAD 130 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~D 130 (413)
.+|+|.| .|++|.++++.|+..|. +++++|... .+.+.+.+.++++.+. -.+..+..+
T Consensus 37 ~~VlivG-~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~-v~v~~~~~~ 114 (346)
T 1y8q_A 37 SRVLLVG-LKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPM-VDVKVDTED 114 (346)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTT-SEEEEECSC
T ss_pred CeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCC-eEEEEEecc
Confidence 7899999 59999999999999998 788886432 1122234445555433 456666666
Q ss_pred CCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecC
Q 015080 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYG 201 (413)
Q Consensus 131 l~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~ 201 (413)
+++ ...+++ .++|+||.+.. +. ..-..+-+.|.+.++ .+|..++.+.+|
T Consensus 115 ~~~--~~~~~~--~~~dvVv~~~d---------~~--------~~r~~ln~~~~~~~i-p~i~~~~~G~~G 163 (346)
T 1y8q_A 115 IEK--KPESFF--TQFDAVCLTCC---------SR--------DVIVKVDQICHKNSI-KFFTGDVFGYHG 163 (346)
T ss_dssp GGG--CCHHHH--TTCSEEEEESC---------CH--------HHHHHHHHHHHHTTC-EEEEEEEEBTEE
T ss_pred cCc--chHHHh--cCCCEEEEcCC---------CH--------HHHHHHHHHHHHcCC-CEEEEeecccEE
Confidence 643 234556 67899997642 11 122335556667664 677776655444
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0017 Score=63.80 Aligned_cols=72 Identities=18% Similarity=0.306 Sum_probs=55.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|+|.|+ |-+|+++|+.|.++|++|++++.+.. ..+.+.+. -++..+.+|-++++.++++=- .++|.+|
T Consensus 4 M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~----~~~~~~~~----~~~~~i~Gd~~~~~~L~~Agi-~~ad~~i 73 (461)
T 4g65_A 4 MKIIILGA-GQVGGTLAENLVGENNDITIVDKDGD----RLRELQDK----YDLRVVNGHASHPDVLHEAGA-QDADMLV 73 (461)
T ss_dssp EEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHH----HHHHHHHH----SSCEEEESCTTCHHHHHHHTT-TTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHH----HHHHHHHh----cCcEEEEEcCCCHHHHHhcCC-CcCCEEE
Confidence 88999995 99999999999999999999985432 22333221 367889999999999887732 5789988
Q ss_pred Ec
Q 015080 151 HF 152 (413)
Q Consensus 151 ~~ 152 (413)
-+
T Consensus 74 a~ 75 (461)
T 4g65_A 74 AV 75 (461)
T ss_dssp EC
T ss_pred EE
Confidence 43
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0028 Score=59.50 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=54.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHH-hhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKF-FSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~dvv 149 (413)
++++|.|+ |.+|+.++++|.+.|+ |+++++++. . .+ +++ .++.++.+|.+|++.++++ + .++|.|
T Consensus 116 ~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~---~-~~-~~~-----~~~~~i~gd~~~~~~L~~a~i--~~a~~v 181 (336)
T 1lnq_A 116 RHVVICGW-SESTLECLRELRGSEV-FVLAEDENV---R-KK-VLR-----SGANFVHGDPTRVSDLEKANV--RGARAV 181 (336)
T ss_dssp CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGG---H-HH-HHH-----TTCEEEESCTTSHHHHHHTCS--TTEEEE
T ss_pred CCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChh---h-hh-HHh-----CCcEEEEeCCCCHHHHHhcCh--hhccEE
Confidence 68999995 9999999999999999 998865332 2 22 322 4688999999999999877 5 578888
Q ss_pred EEcC
Q 015080 150 MHFA 153 (413)
Q Consensus 150 i~~A 153 (413)
|-+.
T Consensus 182 i~~~ 185 (336)
T 1lnq_A 182 IVDL 185 (336)
T ss_dssp EECC
T ss_pred EEcC
Confidence 8654
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0014 Score=61.21 Aligned_cols=113 Identities=18% Similarity=0.176 Sum_probs=70.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhc---CCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELF---PEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
++|.|+|| |.+|..++..|+..|+ +|+++|++....+.....+.+.. ....++.. ..|+ +.+ .+.
T Consensus 15 ~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~-t~d~-------~al--~~a 83 (328)
T 2hjr_A 15 KKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG-ENNY-------EYL--QNS 83 (328)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE-ESCG-------GGG--TTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE-CCCH-------HHH--CCC
Confidence 68999997 9999999999999999 99999876543332222222211 11122222 1332 234 688
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
|+||-++|...-+. ....+....|..-.+.+.+.+.+.... .+|.+|.
T Consensus 84 D~VI~avg~p~k~g--~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 132 (328)
T 2hjr_A 84 DVVIITAGVPRKPN--MTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132 (328)
T ss_dssp SEEEECCSCCCCTT--CCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CEEEEcCCCCCCCC--CchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999998643111 122245567888888888888876544 4444443
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0016 Score=61.15 Aligned_cols=94 Identities=16% Similarity=0.093 Sum_probs=59.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH---HHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA---KAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~~d 147 (413)
++|||+|| |+||..+++.+...|++|++++++.. ..+.++++ +.. . ..|.++. +.+.+.. .++|
T Consensus 166 ~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~~~l---Ga~--~-~~d~~~~~~~~~~~~~~--~~~d 232 (339)
T 1rjw_A 166 EWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDE----KLELAKEL---GAD--L-VVNPLKEDAAKFMKEKV--GGVH 232 (339)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHT---TCS--E-EECTTTSCHHHHHHHHH--SSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHC---CCC--E-EecCCCccHHHHHHHHh--CCCC
Confidence 78999999 77999999999999999999875432 22233333 111 1 2465543 2333333 5899
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
+||+++|.. ......++.++. .+++|.+++
T Consensus 233 ~vid~~g~~-----------------~~~~~~~~~l~~--~G~~v~~g~ 262 (339)
T 1rjw_A 233 AAVVTAVSK-----------------PAFQSAYNSIRR--GGACVLVGL 262 (339)
T ss_dssp EEEESSCCH-----------------HHHHHHHHHEEE--EEEEEECCC
T ss_pred EEEECCCCH-----------------HHHHHHHHHhhc--CCEEEEecc
Confidence 999999831 012334444443 358988876
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0046 Score=57.27 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=69.0
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhc-CCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELF-PEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
||+|.|.| +|.+|..++..|++.| ++|++++++....+.....+.+.. ..+..+.....| . +.+ .+.
T Consensus 1 m~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d---~----~~~--~~a 70 (309)
T 1hyh_A 1 ARKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND---W----AAL--ADA 70 (309)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC---G----GGG--TTC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCC---H----HHh--CCC
Confidence 57899999 7999999999999999 799999875433222222222111 011123332233 2 234 578
Q ss_pred cEEEEcCcccCc-cC-CcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 147 DAVMHFAAVAYV-GE-STLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 147 dvvi~~Ag~~~~-~~-~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
|+||-+++.... .. ......+....|....+.+++.+.+.... .+|.+|.
T Consensus 71 DvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tN 123 (309)
T 1hyh_A 71 DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN 123 (309)
T ss_dssp SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred CEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 999998875331 00 00112235667887788888888775433 4555443
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0015 Score=61.70 Aligned_cols=96 Identities=13% Similarity=0.111 Sum_probs=60.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHH---HHHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAK---AVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~~ 146 (413)
++|||+|| |.||..+++.+...|+ +|++++++. +..+.++++. .. .. .|..+.+ .+.++....++
T Consensus 169 ~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~----~~~~~~~~~G---a~-~~--~~~~~~~~~~~v~~~~~g~g~ 237 (348)
T 2d8a_A 169 KSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSD----FRRELAKKVG---AD-YV--INPFEEDVVKEVMDITDGNGV 237 (348)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCH----HHHHHHHHHT---CS-EE--ECTTTSCHHHHHHHHTTTSCE
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH----HHHHHHHHhC---CC-EE--ECCCCcCHHHHHHHHcCCCCC
Confidence 78999999 9999999999999999 999987542 2223333331 11 12 3444322 33333322479
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
|+||+++|.. ......++.++. .+++|.+++
T Consensus 238 D~vid~~g~~-----------------~~~~~~~~~l~~--~G~iv~~g~ 268 (348)
T 2d8a_A 238 DVFLEFSGAP-----------------KALEQGLQAVTP--AGRVSLLGL 268 (348)
T ss_dssp EEEEECSCCH-----------------HHHHHHHHHEEE--EEEEEECCC
T ss_pred CEEEECCCCH-----------------HHHHHHHHHHhc--CCEEEEEcc
Confidence 9999999831 112334444433 358998876
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0029 Score=58.98 Aligned_cols=83 Identities=22% Similarity=0.274 Sum_probs=54.8
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC-------------------CCCchhhhhhhhhcCCCCceEE
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-------------------RGNIGAVKVLQELFPEPGRLQF 126 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 126 (413)
+.+ ++|+|.| .|++|+++++.|+..|. +++++|... .+.+.+++.++++.+. -.+..
T Consensus 32 L~~-~~VlIvG-aGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~-v~v~~ 108 (340)
T 3rui_A 32 IKN-TKVLLLG-AGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPL-MDATG 108 (340)
T ss_dssp HHT-CEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTT-CEEEE
T ss_pred HhC-CEEEEEC-CCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCC-CEEEE
Confidence 445 8999999 59999999999999998 788887643 1122244445555432 34455
Q ss_pred EEccCC--------------CHHHHHHHhhcCCCcEEEEcCc
Q 015080 127 IYADLG--------------DAKAVNKFFSENAFDAVMHFAA 154 (413)
Q Consensus 127 ~~~Dl~--------------d~~~~~~~~~~~~~dvvi~~Ag 154 (413)
+..++. +.+.+.+++ .++|+||++.-
T Consensus 109 ~~~~i~~~g~~~~~~~~~~~~~~~l~~~l--~~~DlVvd~tD 148 (340)
T 3rui_A 109 VKLSIPMIGHKLVNEEAQHKDFDRLRALI--KEHDIIFLLVD 148 (340)
T ss_dssp ECCCCCCTTSCCSCHHHHHHHHHHHHHHH--HHCSEEEECCS
T ss_pred EeccccccCcccchhhhhcCCHHHHHhhh--ccCCEEEecCC
Confidence 554441 234455666 56899998753
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0047 Score=58.29 Aligned_cols=76 Identities=17% Similarity=0.156 Sum_probs=49.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEcc--CCCHHHHHHHhh---cCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD--LGDAKAVNKFFS---ENA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D--l~d~~~~~~~~~---~~~ 145 (413)
++|||+|+ |.+|...+..+...|++|++++++.. ..+.++++ +.. ..+..+ -...+.+.+... ..+
T Consensus 170 ~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~----~~~~~~~l---Ga~-~~~~~~~~~~~~~~i~~~~~~~~g~g 240 (352)
T 1e3j_A 170 TTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPR----RLEVAKNC---GAD-VTLVVDPAKEEESSIIERIRSAIGDL 240 (352)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHT---TCS-EEEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHH----HHHHHHHh---CCC-EEEcCcccccHHHHHHHHhccccCCC
Confidence 79999996 99999999998889999988875322 22333333 122 222111 222445555543 357
Q ss_pred CcEEEEcCcc
Q 015080 146 FDAVMHFAAV 155 (413)
Q Consensus 146 ~dvvi~~Ag~ 155 (413)
+|+||+++|.
T Consensus 241 ~D~vid~~g~ 250 (352)
T 1e3j_A 241 PNVTIDCSGN 250 (352)
T ss_dssp CSEEEECSCC
T ss_pred CCEEEECCCC
Confidence 9999999973
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0017 Score=58.95 Aligned_cols=73 Identities=22% Similarity=0.243 Sum_probs=47.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
+.+ |+++|+|+ |++|++++..|++.|+ +|++++|+..+ +.+...++.. ..+..+ ++.+.. ..+
T Consensus 118 l~~-k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~---a~~la~~~~~--~~~~~~--~~~~l~-------~~~ 181 (272)
T 3pwz_A 118 LRN-RRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAK---ALALRNELDH--SRLRIS--RYEALE-------GQS 181 (272)
T ss_dssp CTT-SEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHH---HHHHHHHHCC--TTEEEE--CSGGGT-------TCC
T ss_pred ccC-CEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHH---HHHHHHHhcc--CCeeEe--eHHHhc-------ccC
Confidence 345 89999996 8999999999999996 89998765433 3333333221 123433 222211 147
Q ss_pred CcEEEEcCcc
Q 015080 146 FDAVMHFAAV 155 (413)
Q Consensus 146 ~dvvi~~Ag~ 155 (413)
.|+|||+-..
T Consensus 182 ~DivInaTp~ 191 (272)
T 3pwz_A 182 FDIVVNATSA 191 (272)
T ss_dssp CSEEEECSSG
T ss_pred CCEEEECCCC
Confidence 8999998754
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.018 Score=53.15 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=74.0
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhc-CCCCceEEEE-ccCCCHHHHHHHhhcCCCcE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELF-PEPGRLQFIY-ADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~-~Dl~d~~~~~~~~~~~~~dv 148 (413)
+|.|+|| |.+|..++..|+..|. +|+++|++....+.....+.+.. .......+.. .| .+ .+ .+.|+
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d---~~----a~--~~aD~ 70 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNS---YE----DM--RGSDI 70 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESC---GG----GG--TTCSE
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCC---HH----Hh--CCCCE
Confidence 4889998 9999999999998887 79999976443333223332210 0011223332 33 22 34 68999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
||..||...- .-....+....|..-.+.+++.+.+.... .+|.+|.
T Consensus 71 Vi~~ag~~~k--~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (308)
T 2d4a_B 71 VLVTAGIGRK--PGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117 (308)
T ss_dssp EEECCSCCCC--SSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 9999987432 22345667888999999999999886533 6666654
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0035 Score=59.49 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=49.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC-HHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD-AKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~dvv 149 (413)
++|||+| +|.||...+..+...|++|++++++.. ..+.++++ +.. ..+.-+-.+ .+.+.++....++|+|
T Consensus 191 ~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~----~~~~~~~l---Ga~-~vi~~~~~~~~~~v~~~~~g~g~D~v 261 (363)
T 3uog_A 191 DRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSRE----KLDRAFAL---GAD-HGINRLEEDWVERVYALTGDRGADHI 261 (363)
T ss_dssp CEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHH---TCS-EEEETTTSCHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCch----hHHHHHHc---CCC-EEEcCCcccHHHHHHHHhCCCCceEE
Confidence 7999999 899999999999999999999875432 22233443 121 222222122 2344455443589999
Q ss_pred EEcCc
Q 015080 150 MHFAA 154 (413)
Q Consensus 150 i~~Ag 154 (413)
|+++|
T Consensus 262 id~~g 266 (363)
T 3uog_A 262 LEIAG 266 (363)
T ss_dssp EEETT
T ss_pred EECCC
Confidence 99998
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.01 Score=55.71 Aligned_cols=93 Identities=17% Similarity=0.164 Sum_probs=55.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC---EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY---RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
++|+|.||+|.+|+.+++.|.++++ +++.+... ++..+... + .+..+.+...| ++ .+ .++|
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~-~~~g~~~~----~--~g~~i~~~~~~---~~----~~--~~~D 70 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA-ESAGQRMG----F--AESSLRVGDVD---SF----DF--SSVG 70 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT-TTTTCEEE----E--TTEEEECEEGG---GC----CG--GGCS
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecC-CCCCCccc----c--CCcceEEecCC---HH----Hh--cCCC
Confidence 6799999999999999999997755 45554311 11111000 0 01112222222 11 13 4789
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
+||.+.|.. .+..+++.+.+.|. ++|-+|+..
T Consensus 71 vV~~a~g~~------------------~s~~~a~~~~~aG~-kvId~Sa~~ 102 (340)
T 2hjs_A 71 LAFFAAAAE------------------VSRAHAERARAAGC-SVIDLSGAL 102 (340)
T ss_dssp EEEECSCHH------------------HHHHHHHHHHHTTC-EEEETTCTT
T ss_pred EEEEcCCcH------------------HHHHHHHHHHHCCC-EEEEeCCCC
Confidence 999988732 24567777788876 578888754
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.021 Score=53.94 Aligned_cols=93 Identities=14% Similarity=0.212 Sum_probs=56.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC---EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY---RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
++|.|.||||++|.+|++.|.++++ ++..+.- .++..+... . .+....+...|.. .+ .++|
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as-~~saG~~~~----~--~~~~~~~~~~~~~-------~~--~~~D 66 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS-ARSAGKSLK----F--KDQDITIEETTET-------AF--EGVD 66 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEEC-TTTTTCEEE----E--TTEEEEEEECCTT-------TT--TTCS
T ss_pred cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEc-cccCCCcce----e--cCCCceEeeCCHH-------Hh--cCCC
Confidence 7899999999999999999999766 3444431 222211111 0 0112223223311 12 5789
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
+||.|++.. .++...+.+.+.|. ++|-.|+..
T Consensus 67 vvf~a~~~~------------------~s~~~a~~~~~~G~-~vIDlSa~~ 98 (366)
T 3pwk_A 67 IALFSAGSS------------------TSAKYAPYAVKAGV-VVVDNTSYF 98 (366)
T ss_dssp EEEECSCHH------------------HHHHHHHHHHHTTC-EEEECSSTT
T ss_pred EEEECCChH------------------hHHHHHHHHHHCCC-EEEEcCCcc
Confidence 999988631 24556677777776 788888854
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0055 Score=57.91 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=58.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
++|.|.||+|.+|+.+++.|.++.. +|+.+................+. ..+ ..|+.-.+ .+.+ .++|+|
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~---~~v---~~dl~~~~--~~~~--~~vDvV 86 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLR---AQK---LPTLVSVK--DADF--STVDAV 86 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGT---TSC---CCCCBCGG--GCCG--GGCSEE
T ss_pred cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhc---Ccc---cccceecc--hhHh--cCCCEE
Confidence 6899999999999999999998864 77777542222111111111111 111 13333222 2233 478999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
|.|++... +....+.+ +.|. ++|-.|+..
T Consensus 87 f~atp~~~------------------s~~~a~~~-~aG~-~VId~sa~~ 115 (359)
T 1xyg_A 87 FCCLPHGT------------------TQEIIKEL-PTAL-KIVDLSADF 115 (359)
T ss_dssp EECCCTTT------------------HHHHHHTS-CTTC-EEEECSSTT
T ss_pred EEcCCchh------------------HHHHHHHH-hCCC-EEEECCccc
Confidence 99986431 34456666 6665 788888843
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.007 Score=61.15 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=53.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCC-------------------chhhhhhhhhcCCCCceEEEEcc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGN-------------------IGAVKVLQELFPEPGRLQFIYAD 130 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~D 130 (413)
.+|+|.|+ |++|.++++.|+..|. +++++|...=.. +.+++.++++.+. -.+..+..+
T Consensus 18 s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~-v~V~a~~~~ 95 (640)
T 1y8q_B 18 GRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPK-ANIVAYHDS 95 (640)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTT-CEEEEEESC
T ss_pred CeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCC-CeEEEEecc
Confidence 78999995 9999999999999998 788888643111 1123334444332 466777778
Q ss_pred CCCHHHHHHHhhcCCCcEEEEcC
Q 015080 131 LGDAKAVNKFFSENAFDAVMHFA 153 (413)
Q Consensus 131 l~d~~~~~~~~~~~~~dvvi~~A 153 (413)
+++.....+++ .++|+||.+.
T Consensus 96 i~~~~~~~~~~--~~~DlVvda~ 116 (640)
T 1y8q_B 96 IMNPDYNVEFF--RQFILVMNAL 116 (640)
T ss_dssp TTSTTSCHHHH--TTCSEEEECC
T ss_pred cchhhhhHhhh--cCCCEEEECC
Confidence 76533223455 6789999874
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0022 Score=61.81 Aligned_cols=72 Identities=21% Similarity=0.270 Sum_probs=48.8
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
..+ ++|+|.|+ |.+|..+++.|...|+ +|++++|... .+.+...++ ++.. .+. +++.+.+ .+
T Consensus 165 l~g-~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~---ra~~la~~~-----g~~~--~~~---~~l~~~l--~~ 227 (404)
T 1gpj_A 165 LHD-KTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYE---RAVELARDL-----GGEA--VRF---DELVDHL--AR 227 (404)
T ss_dssp CTT-CEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHH---HHHHHHHHH-----TCEE--CCG---GGHHHHH--HT
T ss_pred ccC-CEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHH---HHHHHHHHc-----CCce--ecH---HhHHHHh--cC
Confidence 456 89999997 9999999999999998 8999876432 222222222 1222 222 2455555 57
Q ss_pred CcEEEEcCcc
Q 015080 146 FDAVMHFAAV 155 (413)
Q Consensus 146 ~dvvi~~Ag~ 155 (413)
+|+||.+.+.
T Consensus 228 aDvVi~at~~ 237 (404)
T 1gpj_A 228 SDVVVSATAA 237 (404)
T ss_dssp CSEEEECCSS
T ss_pred CCEEEEccCC
Confidence 8999999764
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0051 Score=58.31 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=48.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEcc-C--CC-HHHHHHHh--hcC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD-L--GD-AKAVNKFF--SEN 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D-l--~d-~~~~~~~~--~~~ 144 (413)
.+|||+||+|.+|...+..+...|++|+++++...+..+..+.++++. .. .++..+ . .+ .+.+.++. ...
T Consensus 169 ~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lG---a~-~vi~~~~~~~~~~~~~i~~~t~~~~~ 244 (364)
T 1gu7_A 169 DWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG---AT-QVITEDQNNSREFGPTIKEWIKQSGG 244 (364)
T ss_dssp CEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHT---CS-EEEEHHHHHCGGGHHHHHHHHHHHTC
T ss_pred cEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcC---Ce-EEEecCccchHHHHHHHHHHhhccCC
Confidence 589999999999999998888889999888754332112223334431 11 122111 0 11 22344443 235
Q ss_pred CCcEEEEcCc
Q 015080 145 AFDAVMHFAA 154 (413)
Q Consensus 145 ~~dvvi~~Ag 154 (413)
++|+||+++|
T Consensus 245 g~Dvvid~~G 254 (364)
T 1gu7_A 245 EAKLALNCVG 254 (364)
T ss_dssp CEEEEEESSC
T ss_pred CceEEEECCC
Confidence 7999999987
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0023 Score=59.51 Aligned_cols=113 Identities=18% Similarity=0.118 Sum_probs=68.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhh---cCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQEL---FPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
++|.|.|+ |.+|..++..|++.|+ +|++++++....+.....+... .....++.. ..|+ +.+ .++
T Consensus 5 ~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d~-------~a~--~~a 73 (317)
T 2ewd_A 5 RKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG-TDDY-------ADI--SGS 73 (317)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESCG-------GGG--TTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE-CCCH-------HHh--CCC
Confidence 68999997 9999999999999998 9999987643322211111111 011112221 1232 234 688
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
|+||-++|....+ .....+....|....+.+++.+.+.... .+|.+|.
T Consensus 74 DiVi~avg~p~~~--g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 74 DVVIITASIPGRP--KDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp SEEEECCCCSSCC--SSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 9999999864322 1223334556777777788887766433 4555554
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0065 Score=57.54 Aligned_cols=77 Identities=18% Similarity=0.095 Sum_probs=51.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCE-EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhh----cCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFS----ENA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----~~~ 145 (413)
.+|||+|+ |.+|...+..+...|++ |++++++.. ..+.++++ . ..+..+..|-.+.+++.+.+. ..+
T Consensus 181 ~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~----~~~~a~~l-~--~~~~~~~~~~~~~~~~~~~v~~~t~g~g 252 (363)
T 3m6i_A 181 DPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEG----RLKFAKEI-C--PEVVTHKVERLSAEESAKKIVESFGGIE 252 (363)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHH----HHHHHHHH-C--TTCEEEECCSCCHHHHHHHHHHHTSSCC
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH----HHHHHHHh-c--hhcccccccccchHHHHHHHHHHhCCCC
Confidence 78999998 99999999998889997 888765332 23334444 2 233334445445554443332 257
Q ss_pred CcEEEEcCcc
Q 015080 146 FDAVMHFAAV 155 (413)
Q Consensus 146 ~dvvi~~Ag~ 155 (413)
+|+||+++|.
T Consensus 253 ~Dvvid~~g~ 262 (363)
T 3m6i_A 253 PAVALECTGV 262 (363)
T ss_dssp CSEEEECSCC
T ss_pred CCEEEECCCC
Confidence 9999999883
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.016 Score=54.28 Aligned_cols=94 Identities=12% Similarity=0.078 Sum_probs=57.8
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCC---CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDS---YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
|++|.|.||+|.||+.+++.|.+++ .+|+.+... ++...... + .+..+.+...|. + .+ .++
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~-~~~G~~~~----~--~~~~i~~~~~~~---~----~~--~~v 66 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASE-RSEGKTYR----F--NGKTVRVQNVEE---F----DW--SQV 66 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECT-TTTTCEEE----E--TTEEEEEEEGGG---C----CG--GGC
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECC-CCCCCcee----e--cCceeEEecCCh---H----Hh--cCC
Confidence 4889999999999999999999874 366666421 11111000 0 012233322221 1 22 468
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
|+||-|.|.. .+....+.+.+.|. ++|-.|+.+
T Consensus 67 DvVf~a~g~~------------------~s~~~a~~~~~~G~-~vId~s~~~ 99 (336)
T 2r00_A 67 HIALFSAGGE------------------LSAKWAPIAAEAGV-VVIDNTSHF 99 (336)
T ss_dssp SEEEECSCHH------------------HHHHHHHHHHHTTC-EEEECSSTT
T ss_pred CEEEECCCch------------------HHHHHHHHHHHcCC-EEEEcCCcc
Confidence 9999888632 14556777777776 788888763
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.015 Score=55.28 Aligned_cols=73 Identities=12% Similarity=0.112 Sum_probs=48.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHH---HHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAK---AVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~~d 147 (413)
.+|||+||+|.+|...+..+...|++|+++. +. +..+.++++ +.. .+ .|..+.+ .+.++.. .++|
T Consensus 166 ~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~----~~~~~~~~l---Ga~-~v--i~~~~~~~~~~v~~~t~-g~~d 233 (371)
T 3gqv_A 166 VYVLVYGGSTATATVTMQMLRLSGYIPIATC-SP----HNFDLAKSR---GAE-EV--FDYRAPNLAQTIRTYTK-NNLR 233 (371)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CG----GGHHHHHHT---TCS-EE--EETTSTTHHHHHHHHTT-TCCC
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CH----HHHHHHHHc---CCc-EE--EECCCchHHHHHHHHcc-CCcc
Confidence 8999999999999999999999999998875 22 223334443 111 22 2333332 3333332 4599
Q ss_pred EEEEcCcc
Q 015080 148 AVMHFAAV 155 (413)
Q Consensus 148 vvi~~Ag~ 155 (413)
++|.++|.
T Consensus 234 ~v~d~~g~ 241 (371)
T 3gqv_A 234 YALDCITN 241 (371)
T ss_dssp EEEESSCS
T ss_pred EEEECCCc
Confidence 99999983
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.017 Score=56.12 Aligned_cols=94 Identities=13% Similarity=0.230 Sum_probs=60.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC-C---EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccC--CCHHH-HHHHhhc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS-Y---RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL--GDAKA-VNKFFSE 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G-~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~d~~~-~~~~~~~ 143 (413)
++|+|.| .|+||+.+++.|+++. . +|++++...... ++.+. . ++.+...++ .|.++ +.+++++
T Consensus 14 ~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~-~~~~~---~-----g~~~~~~~Vdadnv~~~l~aLl~~ 83 (480)
T 2ph5_A 14 NRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV-DVAQQ---Y-----GVSFKLQQITPQNYLEVIGSTLEE 83 (480)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC-CHHHH---H-----TCEEEECCCCTTTHHHHTGGGCCT
T ss_pred CCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhh-hHHhh---c-----CCceeEEeccchhHHHHHHHHhcC
Confidence 6799999 7999999999999974 4 688887533322 22211 1 234554554 55544 5567753
Q ss_pred CCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Q 015080 144 NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSS 195 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~S 195 (413)
.|+|||++- .. ....++++|.+.|+ ++|-++
T Consensus 84 --~DvVIN~s~-~~-----------------~~l~Im~acleaGv-~YlDTa 114 (480)
T 2ph5_A 84 --NDFLIDVSI-GI-----------------SSLALIILCNQKGA-LYINAA 114 (480)
T ss_dssp --TCEEEECCS-SS-----------------CHHHHHHHHHHHTC-EEEESS
T ss_pred --CCEEEECCc-cc-----------------cCHHHHHHHHHcCC-CEEECC
Confidence 499998552 11 13458899999986 566555
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.014 Score=56.22 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=48.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC---HHHHHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD---AKAVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d---~~~~~~~~~~~~~ 146 (413)
.+|||+|+ |.+|...+..+...|+ +|++++++. +..+.++++. .. .+ .|..+ .+.+.++....++
T Consensus 215 ~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~----~~~~~~~~lG---a~-~v--i~~~~~~~~~~i~~~t~g~g~ 283 (404)
T 3ip1_A 215 DNVVILGG-GPIGLAAVAILKHAGASKVILSEPSE----VRRNLAKELG---AD-HV--IDPTKENFVEAVLDYTNGLGA 283 (404)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCH----HHHHHHHHHT---CS-EE--ECTTTSCHHHHHHHHTTTCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH----HHHHHHHHcC---CC-EE--EcCCCCCHHHHHHHHhCCCCC
Confidence 78999998 9999999999888999 898876432 2233344441 11 12 23333 2344444433579
Q ss_pred cEEEEcCcc
Q 015080 147 DAVMHFAAV 155 (413)
Q Consensus 147 dvvi~~Ag~ 155 (413)
|+||.++|.
T Consensus 284 D~vid~~g~ 292 (404)
T 3ip1_A 284 KLFLEATGV 292 (404)
T ss_dssp SEEEECSSC
T ss_pred CEEEECCCC
Confidence 999999884
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.013 Score=55.19 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=27.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC-CEEEEEec
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVDN 102 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G-~~V~~~~r 102 (413)
++|.|.||+|.+|+.+++.|.+++ .+|+.+.+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~ 41 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAA 41 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 689999999999999999998875 47877754
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.018 Score=54.79 Aligned_cols=67 Identities=25% Similarity=0.324 Sum_probs=51.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|+|.| +|.+|+.+++.+.+.|++|++++....... ... .-.++..|..|.+.+.++++ .+|+|.
T Consensus 13 ~~IlIlG-~G~lg~~la~aa~~lG~~viv~d~~~~~p~--~~~---------ad~~~~~~~~d~~~l~~~~~--~~dvi~ 78 (377)
T 3orq_A 13 ATIGIIG-GGQLGKMMAQSAQKMGYKVVVLDPSEDCPC--RYV---------AHEFIQAKYDDEKALNQLGQ--KCDVIT 78 (377)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCTTCTT--GGG---------SSEEEECCTTCHHHHHHHHH--HCSEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCCCChh--hhh---------CCEEEECCCCCHHHHHHHHH--hCCcce
Confidence 8999999 599999999999999999999986433221 111 12456789999999999984 478874
Q ss_pred E
Q 015080 151 H 151 (413)
Q Consensus 151 ~ 151 (413)
.
T Consensus 79 ~ 79 (377)
T 3orq_A 79 Y 79 (377)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.014 Score=52.76 Aligned_cols=58 Identities=17% Similarity=0.293 Sum_probs=45.8
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
.+.| |+++|.|+++.+|+.++..|+..|++|+++.+..+ .+.+.+ ..
T Consensus 157 ~l~G-k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~------------------------------~L~~~~--~~ 203 (285)
T 3p2o_A 157 DLEG-KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTK------------------------------DLSLYT--RQ 203 (285)
T ss_dssp CCTT-CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS------------------------------CHHHHH--TT
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCch------------------------------hHHHHh--hc
Confidence 3557 99999999999999999999999999999864211 133445 67
Q ss_pred CcEEEEcCccc
Q 015080 146 FDAVMHFAAVA 156 (413)
Q Consensus 146 ~dvvi~~Ag~~ 156 (413)
.|+||...|..
T Consensus 204 ADIVI~Avg~p 214 (285)
T 3p2o_A 204 ADLIIVAAGCV 214 (285)
T ss_dssp CSEEEECSSCT
T ss_pred CCEEEECCCCC
Confidence 89999988853
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0047 Score=58.47 Aligned_cols=72 Identities=19% Similarity=0.217 Sum_probs=48.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH-HHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA-KAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~~~dvv 149 (413)
.+|||+|+ |.||..++..+...|++|++++++..+.+ .++++ +.. .+ .|..+. +..+++. .++|+|
T Consensus 181 ~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~----~~~~l---Ga~-~v--~~~~~~~~~~~~~~--~~~D~v 247 (360)
T 1piw_A 181 KKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKRE----DAMKM---GAD-HY--IATLEEGDWGEKYF--DTFDLI 247 (360)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHH----HHHHH---TCS-EE--EEGGGTSCHHHHSC--SCEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHH----HHHHc---CCC-EE--EcCcCchHHHHHhh--cCCCEE
Confidence 79999999 99999999988888999999987544432 22233 111 12 233333 2233332 589999
Q ss_pred EEcCcc
Q 015080 150 MHFAAV 155 (413)
Q Consensus 150 i~~Ag~ 155 (413)
|+++|.
T Consensus 248 id~~g~ 253 (360)
T 1piw_A 248 VVCASS 253 (360)
T ss_dssp EECCSC
T ss_pred EECCCC
Confidence 999985
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0076 Score=54.40 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=46.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
++++|+|+ |+.|++++..|++.|.+|++++|+..+.+++. +. ++... ++.+ + .+.|+||
T Consensus 119 k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la----~~-----~~~~~--~~~~-------l--~~~DiVI 177 (269)
T 3phh_A 119 QNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ----RL-----GCDCF--MEPP-------K--SAFDLII 177 (269)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH----HH-----TCEEE--SSCC-------S--SCCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----HC-----CCeEe--cHHH-------h--ccCCEEE
Confidence 89999995 99999999999999999999987655444333 22 12222 2222 1 2689999
Q ss_pred EcCccc
Q 015080 151 HFAAVA 156 (413)
Q Consensus 151 ~~Ag~~ 156 (413)
|+....
T Consensus 178 naTp~G 183 (269)
T 3phh_A 178 NATSAS 183 (269)
T ss_dssp ECCTTC
T ss_pred EcccCC
Confidence 987653
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0081 Score=57.07 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=50.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
.+|||+|+ |.||...+..+...|++|++++++..+. +.++++ +.. .+ .|..+.+.++++. .++|+||
T Consensus 196 ~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~----~~a~~l---Ga~-~v--i~~~~~~~~~~~~--~g~Dvvi 262 (369)
T 1uuf_A 196 KKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKR----EAAKAL---GAD-EV--VNSRNADEMAAHL--KSFDFIL 262 (369)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGH----HHHHHH---TCS-EE--EETTCHHHHHTTT--TCEEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHc---CCc-EE--eccccHHHHHHhh--cCCCEEE
Confidence 78999997 8899999998888999999987643322 233333 111 11 3556665454444 5899999
Q ss_pred EcCcc
Q 015080 151 HFAAV 155 (413)
Q Consensus 151 ~~Ag~ 155 (413)
+++|.
T Consensus 263 d~~g~ 267 (369)
T 1uuf_A 263 NTVAA 267 (369)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 99984
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.005 Score=58.23 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=49.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhh-hhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQ-ELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
.+|||+|+ |.||...+..+...|++|++++++..+. +.+. ++ +.. .+ .|..+.+.+.++. .++|+|
T Consensus 182 ~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~----~~~~~~l---Ga~-~v--i~~~~~~~~~~~~--~g~D~v 248 (357)
T 2cf5_A 182 LRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKR----EEALQDL---GAD-DY--VIGSDQAKMSELA--DSLDYV 248 (357)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHH----HHHHTTS---CCS-CE--EETTCHHHHHHST--TTEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHH----HHHHHHc---CCc-ee--eccccHHHHHHhc--CCCCEE
Confidence 78999995 9999999998888899999988643322 1222 22 111 11 3455666666554 579999
Q ss_pred EEcCcc
Q 015080 150 MHFAAV 155 (413)
Q Consensus 150 i~~Ag~ 155 (413)
|+++|.
T Consensus 249 id~~g~ 254 (357)
T 2cf5_A 249 IDTVPV 254 (357)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999984
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0049 Score=61.53 Aligned_cols=84 Identities=21% Similarity=0.264 Sum_probs=55.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC-------------------CCCchhhhhhhhhcCCCCceE
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-------------------RGNIGAVKVLQELFPEPGRLQ 125 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~ 125 (413)
.+.+ ++|+|.| .|++|.++++.|+..|. +++++|... .+.+.+++.++++.+. -.++
T Consensus 324 kL~~-~kVLIVG-aGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~-v~v~ 400 (598)
T 3vh1_A 324 IIKN-TKVLLLG-AGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPL-MDAT 400 (598)
T ss_dssp HHHT-CEEEEEC-CSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTT-CEEE
T ss_pred HHhC-CeEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCC-cEEE
Confidence 3445 8999999 59999999999999998 788886541 1222344555555433 3455
Q ss_pred EEEccC--------------CCHHHHHHHhhcCCCcEEEEcCc
Q 015080 126 FIYADL--------------GDAKAVNKFFSENAFDAVMHFAA 154 (413)
Q Consensus 126 ~~~~Dl--------------~d~~~~~~~~~~~~~dvvi~~Ag 154 (413)
.+..++ .+.+.+.+++ .++|+||++..
T Consensus 401 ~~~~~I~~pgh~i~~~~~~~l~~~~l~~li--~~~DvVvdatD 441 (598)
T 3vh1_A 401 GVKLSIPMIGHKLVNEEAQHKDFDRLRALI--KEHDIIFLLVD 441 (598)
T ss_dssp EECCCCCCSSCCCCSHHHHHHHHHHHHHHH--HHCSEEEECCS
T ss_pred EEeccccccCcccccccccccCHHHHHHHH--hcCCEEEECCC
Confidence 555544 1234556666 46899998753
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.017 Score=54.62 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=51.0
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccC----------------
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL---------------- 131 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl---------------- 131 (413)
.+ ++|+|+|+ |-+|..+++.+...|++|++++++..+.+ .+.++ +..++..|+
T Consensus 183 ~~-~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~----~~~~l-----Ga~~~~l~~~~~~~~gya~~~~~~~ 251 (381)
T 3p2y_A 183 KP-ASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAE----QVRSV-----GAQWLDLGIDAAGEGGYARELSEAE 251 (381)
T ss_dssp CC-CEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHH----HHHHT-----TCEECCCC-------------CHHH
T ss_pred CC-CEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHHHc-----CCeEEeccccccccccchhhhhHHH
Confidence 45 78999996 99999999999999999999986543222 22222 223332221
Q ss_pred --CCHHHHHHHhhcCCCcEEEEcCccc
Q 015080 132 --GDAKAVNKFFSENAFDAVMHFAAVA 156 (413)
Q Consensus 132 --~d~~~~~~~~~~~~~dvvi~~Ag~~ 156 (413)
.+.+.+.+++ .+.|+||.++.+.
T Consensus 252 ~~~~~~~l~e~l--~~aDIVI~tv~iP 276 (381)
T 3p2y_A 252 RAQQQQALEDAI--TKFDIVITTALVP 276 (381)
T ss_dssp HHHHHHHHHHHH--TTCSEEEECCCCT
T ss_pred HhhhHHHHHHHH--hcCCEEEECCCCC
Confidence 1234566666 7899999887543
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0051 Score=61.49 Aligned_cols=84 Identities=21% Similarity=0.255 Sum_probs=56.2
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC-------------------CCCchhhhhhhhhcCCCCceE
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-------------------RGNIGAVKVLQELFPEPGRLQ 125 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~ 125 (413)
.+.+ .+|+|.| .|++|.++++.|+..|. +++++|... .+.+.+++.++++.+. -.++
T Consensus 323 kL~~-arVLIVG-aGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~-V~v~ 399 (615)
T 4gsl_A 323 IIKN-TKVLLLG-AGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPL-MDAT 399 (615)
T ss_dssp HHHT-CEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTT-CEEE
T ss_pred HHhC-CeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCC-cEEE
Confidence 3455 8999999 59999999999999998 788888653 1222344555555443 3455
Q ss_pred EEEccC-------C-------CHHHHHHHhhcCCCcEEEEcCc
Q 015080 126 FIYADL-------G-------DAKAVNKFFSENAFDAVMHFAA 154 (413)
Q Consensus 126 ~~~~Dl-------~-------d~~~~~~~~~~~~~dvvi~~Ag 154 (413)
.+..++ + +.+.+.+++ .++|+||++..
T Consensus 400 ~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll--~~~DlVvd~tD 440 (615)
T 4gsl_A 400 GVKLSIPMIGHKLVNEEAQHKDFDRLRALI--KEHDIIFLLVD 440 (615)
T ss_dssp EECCCCCCTTCCCSCHHHHHHHHHHHHHHH--HHCSEEEECCS
T ss_pred EeeccccccCccccchhhhcCCHHHHHHHh--hcCCEEEecCC
Confidence 555444 1 233455666 56899998754
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.018 Score=54.81 Aligned_cols=69 Identities=19% Similarity=0.270 Sum_probs=52.2
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
||+|+|+|+ |.+|+.+++.|.+.|++|++++....... .. + . -.++..|..|.+.+.+++ .++|.|
T Consensus 1 M~~Ililg~-g~~g~~~~~a~~~~G~~v~~~~~~~~~~~--~~-~-------~-~~~~~~~~~d~~~l~~~~--~~~d~v 66 (380)
T 3ax6_A 1 MKKIGIIGG-GQLGKMMTLEAKKMGFYVIVLDPTPRSPA--GQ-V-------A-DEQIVAGFFDSERIEDLV--KGSDVT 66 (380)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTT--GG-G-------S-SEEEECCTTCHHHHHHHH--HTCSEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCch--hh-h-------C-ceEEECCCCCHHHHHHHH--hcCCEE
Confidence 689999996 89999999999999999999875433211 11 0 1 135668999999999988 578998
Q ss_pred EEc
Q 015080 150 MHF 152 (413)
Q Consensus 150 i~~ 152 (413)
+..
T Consensus 67 ~~~ 69 (380)
T 3ax6_A 67 TYD 69 (380)
T ss_dssp EES
T ss_pred Eec
Confidence 753
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.003 Score=60.32 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=49.9
Q ss_pred eEEEEEc-CCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC---HHHHHHHhhcCCC
Q 015080 71 THVLVTG-GAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD---AKAVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITG-asG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d---~~~~~~~~~~~~~ 146 (413)
.+|||.| |+|.+|...+..+...|++|++++++.. ..+.++++ +.. ..+ |..+ .+.+.++....++
T Consensus 172 ~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~----~~~~~~~l---Ga~-~~~--~~~~~~~~~~v~~~t~~~g~ 241 (379)
T 3iup_A 172 HSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQE----QADLLKAQ---GAV-HVC--NAASPTFMQDLTEALVSTGA 241 (379)
T ss_dssp CSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHH----HHHHHHHT---TCS-CEE--ETTSTTHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHhC---CCc-EEE--eCCChHHHHHHHHHhcCCCc
Confidence 6799997 8999999999988888999999875332 23333443 121 122 3333 2344455444579
Q ss_pred cEEEEcCcc
Q 015080 147 DAVMHFAAV 155 (413)
Q Consensus 147 dvvi~~Ag~ 155 (413)
|++|++.|.
T Consensus 242 d~v~d~~g~ 250 (379)
T 3iup_A 242 TIAFDATGG 250 (379)
T ss_dssp CEEEESCEE
T ss_pred eEEEECCCc
Confidence 999999984
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0036 Score=58.85 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=48.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC--CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC-HHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD-AKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d 147 (413)
.+|||+|| |.||...+..+... |++|++++++.. ..+.++++. .. .+ .|..+ .+.+.++....++|
T Consensus 172 ~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~----~~~~~~~lG---a~-~v--i~~~~~~~~~~~~~~g~g~D 240 (344)
T 2h6e_A 172 PVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKK----HRDFALELG---AD-YV--SEMKDAESLINKLTDGLGAS 240 (344)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHH----HHHHHHHHT---CS-EE--ECHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHH----HHHHHHHhC---CC-EE--eccccchHHHHHhhcCCCcc
Confidence 79999999 99999999988888 999998865322 223333331 11 11 23333 33344433223799
Q ss_pred EEEEcCcc
Q 015080 148 AVMHFAAV 155 (413)
Q Consensus 148 vvi~~Ag~ 155 (413)
+||+++|.
T Consensus 241 ~vid~~g~ 248 (344)
T 2h6e_A 241 IAIDLVGT 248 (344)
T ss_dssp EEEESSCC
T ss_pred EEEECCCC
Confidence 99999883
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0043 Score=58.84 Aligned_cols=73 Identities=21% Similarity=0.213 Sum_probs=46.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHH-CCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC--HHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD--AKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~d 147 (413)
.+|||+||+|.+|...+..+.. .|++|++++++. +..+.++++ +.. .+ .|..+ .+.+.++ ...++|
T Consensus 173 ~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~----~~~~~~~~l---Gad-~v--i~~~~~~~~~v~~~-~~~g~D 241 (363)
T 4dvj_A 173 PAILIVGGAGGVGSIAVQIARQRTDLTVIATASRP----ETQEWVKSL---GAH-HV--IDHSKPLAAEVAAL-GLGAPA 241 (363)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSH----HHHHHHHHT---TCS-EE--ECTTSCHHHHHHTT-CSCCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCH----HHHHHHHHc---CCC-EE--EeCCCCHHHHHHHh-cCCCce
Confidence 8999999999999888877765 589999987532 223333443 111 12 23332 1222222 225799
Q ss_pred EEEEcCc
Q 015080 148 AVMHFAA 154 (413)
Q Consensus 148 vvi~~Ag 154 (413)
+||.++|
T Consensus 242 vvid~~g 248 (363)
T 4dvj_A 242 FVFSTTH 248 (363)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9999987
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0016 Score=60.96 Aligned_cols=34 Identities=35% Similarity=0.403 Sum_probs=30.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~ 105 (413)
+|||+||+|.+|..++..+...|++|++++++..
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~ 186 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNRE 186 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSS
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 7999999999999999999889999999887543
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0053 Score=58.11 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=48.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH--HHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA--KAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~--~~~~~~~~~~~~d 147 (413)
.+|||+|| |.+|...+..+... |++|++++++.. ..+.++++ +.. .+ .|..+. +.+.++....++|
T Consensus 188 ~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~----~~~~~~~l---Ga~-~v--i~~~~~~~~~v~~~~~g~g~D 256 (359)
T 1h2b_A 188 AYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEE----KLKLAERL---GAD-HV--VDARRDPVKQVMELTRGRGVN 256 (359)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHH----HHHHHHHT---TCS-EE--EETTSCHHHHHHHHTTTCCEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHH----HHHHHHHh---CCC-EE--EeccchHHHHHHHHhCCCCCc
Confidence 79999999 99999999888888 999999875332 22333333 111 12 244443 3344443223799
Q ss_pred EEEEcCcc
Q 015080 148 AVMHFAAV 155 (413)
Q Consensus 148 vvi~~Ag~ 155 (413)
++|+++|.
T Consensus 257 vvid~~G~ 264 (359)
T 1h2b_A 257 VAMDFVGS 264 (359)
T ss_dssp EEEESSCC
T ss_pred EEEECCCC
Confidence 99999983
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.014 Score=55.84 Aligned_cols=38 Identities=24% Similarity=0.116 Sum_probs=32.5
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG 106 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~ 106 (413)
+.+ ++|+|+|+ |.+|..+++.+...|++|+++++...+
T Consensus 170 l~g-~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~~ 207 (384)
T 1l7d_A 170 VPP-ARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAAT 207 (384)
T ss_dssp ECC-CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred CCC-CEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 346 89999995 999999999999999999998875443
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0034 Score=59.39 Aligned_cols=78 Identities=12% Similarity=0.068 Sum_probs=47.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH--HHHHHHhhcC-CCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA--KAVNKFFSEN-AFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~--~~~~~~~~~~-~~d 147 (413)
.+|||+||+|.+|...+..+...|++|+++.+...+..+..+.++++ +.. .++ |..+. +.+.+..... ++|
T Consensus 169 ~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~l---Ga~-~vi--~~~~~~~~~~~~~~~~~~~~D 242 (357)
T 1zsy_A 169 DSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSL---GAE-HVI--TEEELRRPEMKNFFKDMPQPR 242 (357)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHT---TCS-EEE--EHHHHHSGGGGGTTSSSCCCS
T ss_pred CEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhc---CCc-EEE--ecCcchHHHHHHHHhCCCCce
Confidence 79999999999999999888888999888765433222233344443 111 122 21111 1222322221 599
Q ss_pred EEEEcCc
Q 015080 148 AVMHFAA 154 (413)
Q Consensus 148 vvi~~Ag 154 (413)
+||+++|
T Consensus 243 vvid~~g 249 (357)
T 1zsy_A 243 LALNCVG 249 (357)
T ss_dssp EEEESSC
T ss_pred EEEECCC
Confidence 9999987
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0027 Score=57.84 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=30.7
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS 104 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~ 104 (413)
.+ ++++|+|+ |+.|++++..|.+.|+ +|++++|+.
T Consensus 121 ~~-k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~ 156 (282)
T 3fbt_A 121 KN-NICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNP 156 (282)
T ss_dssp TT-SEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred cC-CEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 35 89999995 8999999999999998 899987654
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.011 Score=56.45 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=47.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC-CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCC--CHHHHH----HHhhc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG--DAKAVN----KFFSE 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d~~~~~----~~~~~ 143 (413)
.+|||+| +|.+|...+..+...| .+|++++++.. ..+.++++ +.. .+ .|.. +.+++. ++...
T Consensus 197 ~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~----~~~~~~~l---Ga~-~v--i~~~~~~~~~~~~~v~~~~~g 265 (380)
T 1vj0_A 197 KTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPN----RLKLAEEI---GAD-LT--LNRRETSVEERRKAIMDITHG 265 (380)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHH----HHHHHHHT---TCS-EE--EETTTSCHHHHHHHHHHHTTT
T ss_pred CEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHH----HHHHHHHc---CCc-EE--EeccccCcchHHHHHHHHhCC
Confidence 7999999 8999999999999999 59999886432 22333333 111 22 2333 133333 33222
Q ss_pred CCCcEEEEcCcc
Q 015080 144 NAFDAVMHFAAV 155 (413)
Q Consensus 144 ~~~dvvi~~Ag~ 155 (413)
.++|+||+++|.
T Consensus 266 ~g~Dvvid~~g~ 277 (380)
T 1vj0_A 266 RGADFILEATGD 277 (380)
T ss_dssp SCEEEEEECSSC
T ss_pred CCCcEEEECCCC
Confidence 379999999983
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0026 Score=62.10 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=31.0
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
+.+ |+|+|||+ |.||..+++.|.+.|++|++++++
T Consensus 263 L~G-KtVvVtGa-GgIG~aiA~~Laa~GA~Viv~D~~ 297 (488)
T 3ond_A 263 IAG-KVAVVAGY-GDVGKGCAAALKQAGARVIVTEID 297 (488)
T ss_dssp CTT-CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC
T ss_pred ccC-CEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC
Confidence 457 99999997 599999999999999999998753
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0041 Score=57.88 Aligned_cols=72 Identities=21% Similarity=0.261 Sum_probs=46.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEEE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMH 151 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi~ 151 (413)
+|||+||+|.+|...+..+...|++|++++++..+ .+.++++ +....+ |..+.+.+++ +...++|++|+
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~----~~~~~~l---Ga~~vi---~~~~~~~~~~-~~~~~~d~v~d 217 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGREST----HGYLKSL---GANRIL---SRDEFAESRP-LEKQLWAGAID 217 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG----HHHHHHH---TCSEEE---EGGGSSCCCS-SCCCCEEEEEE
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHhc---CCCEEE---ecCCHHHHHh-hcCCCccEEEE
Confidence 39999999999999999999999999998864432 2333333 122111 2222111111 22257999999
Q ss_pred cCc
Q 015080 152 FAA 154 (413)
Q Consensus 152 ~Ag 154 (413)
++|
T Consensus 218 ~~g 220 (324)
T 3nx4_A 218 TVG 220 (324)
T ss_dssp SSC
T ss_pred CCC
Confidence 987
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.036 Score=51.16 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=32.4
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG 106 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~ 106 (413)
.||+|.|.| .|.+|..+++.|++.|++|++++|+...
T Consensus 20 ~m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~ 56 (310)
T 3doj_A 20 HMMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRTLSK 56 (310)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGG
T ss_pred cCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 458899998 6999999999999999999999876543
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.015 Score=52.98 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=32.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEec
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 102 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r 102 (413)
.+.| |+++|.|+++-+|..++..|++.|++|+++.+
T Consensus 162 ~l~G-k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~ 197 (300)
T 4a26_A 162 EMAG-KRAVVLGRSNIVGAPVAALLMKENATVTIVHS 197 (300)
T ss_dssp CCTT-CEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 3557 99999999999999999999999999999864
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.022 Score=52.36 Aligned_cols=102 Identities=16% Similarity=0.297 Sum_probs=66.8
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhh-------hhhhcCCCCceEEEEccCCCHHHHHHHhh
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKV-------LQELFPEPGRLQFIYADLGDAKAVNKFFS 142 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 142 (413)
||+|-+.| .|-+|..+|+.|++.|++|++.+|+..+.+.+.+. ..+. -...+++..=|.|.+++++++.
T Consensus 3 M~kIgfIG-lG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~---~~~~dvv~~~l~~~~~v~~V~~ 78 (300)
T 3obb_A 3 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDA---VQGADVVISMLPASQHVEGLYL 78 (300)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHH---HTTCSEEEECCSCHHHHHHHHH
T ss_pred cCEEEEee-ehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHH---HhcCCceeecCCchHHHHHHHh
Confidence 68999999 79999999999999999999998754333222111 1111 1345667777888888888774
Q ss_pred c--------CCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEE
Q 015080 143 E--------NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192 (413)
Q Consensus 143 ~--------~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV 192 (413)
. ..=+++|.+.-+ .++ .++.+.+.+.+.++ ++|
T Consensus 79 ~~~g~~~~~~~g~iiId~sT~--------~p~--------~~~~~a~~~~~~G~-~~l 119 (300)
T 3obb_A 79 DDDGLLAHIAPGTLVLECSTI--------APT--------SARKIHAAARERGL-AML 119 (300)
T ss_dssp SSSSSTTSCCC-CEEEECSCC--------CHH--------HHHHHHHHHHTTTC-EEE
T ss_pred chhhhhhcCCCCCEEEECCCC--------CHH--------HHHHHHHHHHHcCC-EEE
Confidence 3 112567766543 232 25567777777765 454
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0072 Score=55.79 Aligned_cols=83 Identities=16% Similarity=0.040 Sum_probs=53.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
.+.+ ++++|.|++.-+|..+++.|+..|++|++++|+........+.+. . ..........++++++.+.+ ..
T Consensus 174 ~l~g-k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la---~--~~~~~t~~~~t~~~~L~e~l--~~ 245 (320)
T 1edz_A 174 RLYG-KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLK---L--NKHHVEDLGEYSEDLLKKCS--LD 245 (320)
T ss_dssp TTTT-CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSS---C--CCCEEEEEEECCHHHHHHHH--HH
T ss_pred CCCC-CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHh---h--hcccccccccccHhHHHHHh--cc
Confidence 3557 999999988788999999999999999998764221111111111 0 00111111124457788888 56
Q ss_pred CcEEEEcCccc
Q 015080 146 FDAVMHFAAVA 156 (413)
Q Consensus 146 ~dvvi~~Ag~~ 156 (413)
.|+||.+.|..
T Consensus 246 ADIVIsAtg~p 256 (320)
T 1edz_A 246 SDVVITGVPSE 256 (320)
T ss_dssp CSEEEECCCCT
T ss_pred CCEEEECCCCC
Confidence 89999988864
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0053 Score=53.59 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=44.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|.|+| +|.+|..+++.|.+.|++|++++|+.. . .+.+.+ .++... +..+++ .++|+||
T Consensus 29 ~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~---~-~~~~~~-----~g~~~~--------~~~~~~--~~~DvVi 88 (215)
T 2vns_A 29 PKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPK---R-TARLFP-----SAAQVT--------FQEEAV--SSPEVIF 88 (215)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHH---H-HHHHSB-----TTSEEE--------EHHHHT--TSCSEEE
T ss_pred CEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHH---H-HHHHHH-----cCCcee--------cHHHHH--hCCCEEE
Confidence 7899999 899999999999999999999886432 1 122211 123321 234455 5789999
Q ss_pred EcCc
Q 015080 151 HFAA 154 (413)
Q Consensus 151 ~~Ag 154 (413)
.+..
T Consensus 89 ~av~ 92 (215)
T 2vns_A 89 VAVF 92 (215)
T ss_dssp ECSC
T ss_pred ECCC
Confidence 8764
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0062 Score=57.36 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=46.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
.+|||+|+ |.||...+..+...|++|++++++..+.+ .++++ +... .+ ++.+.+ . .++|+||
T Consensus 178 ~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~----~~~~l---Ga~~-v~----~~~~~~----~-~~~D~vi 239 (348)
T 3two_A 178 TKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQ----DALSM---GVKH-FY----TDPKQC----K-EELDFII 239 (348)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHH----HHHHT---TCSE-EE----SSGGGC----C-SCEEEEE
T ss_pred CEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHH----HHHhc---CCCe-ec----CCHHHH----h-cCCCEEE
Confidence 79999997 99999999999999999999876544332 23333 2222 22 333322 2 2899999
Q ss_pred EcCcc
Q 015080 151 HFAAV 155 (413)
Q Consensus 151 ~~Ag~ 155 (413)
+++|.
T Consensus 240 d~~g~ 244 (348)
T 3two_A 240 STIPT 244 (348)
T ss_dssp ECCCS
T ss_pred ECCCc
Confidence 99884
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.048 Score=51.53 Aligned_cols=95 Identities=16% Similarity=0.116 Sum_probs=55.7
Q ss_pred ceEEEEEcCCChHHHHHHHH-HHHCCC---EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 70 VTHVLVTGGAGYIGSHAALR-LLKDSY---RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~-L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
|++|.|.||+|.+|+.+++. |.++++ +++.+... +... .+.... +.. ....|..+++.+ .+
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~--s~G~---~v~~~~--g~~--i~~~~~~~~~~~------~~ 65 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS--QLGQ---AAPSFG--GTT--GTLQDAFDLEAL------KA 65 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS--STTS---BCCGGG--TCC--CBCEETTCHHHH------HT
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC--CCCC---CccccC--CCc--eEEEecCChHHh------cC
Confidence 57899999999999999994 554543 55555432 1111 111110 112 222344455442 37
Q ss_pred CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccc
Q 015080 146 FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSSTC 197 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS~ 197 (413)
+|+||.|.|. ..++...+.+.+.|.+ .+|=.||.
T Consensus 66 ~DvVf~a~g~------------------~~s~~~a~~~~~~G~k~vVID~ss~ 100 (367)
T 1t4b_A 66 LDIIVTCQGG------------------DYTNEIYPKLRESGWQGYWIDAASS 100 (367)
T ss_dssp CSEEEECSCH------------------HHHHHHHHHHHHTTCCCEEEECSST
T ss_pred CCEEEECCCc------------------hhHHHHHHHHHHCCCCEEEEcCChh
Confidence 8999999873 2255677777788764 45555553
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.032 Score=52.71 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=48.8
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccC-CCHHHHHHHhhcCCCcE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL-GDAKAVNKFFSENAFDA 148 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-~d~~~~~~~~~~~~~dv 148 (413)
||+|+|+| +|..|..+++.+.+.|++|++++.++..... . ---+++..|. .|.+.+.... .++|.
T Consensus 1 MK~I~ilG-gg~~g~~~~~~Ak~~G~~vv~vd~~~~~~~~---~--------~aD~~~~~~~~~d~~~~~~~~--~~~D~ 66 (363)
T 4ffl_A 1 MKTICLVG-GKLQGFEAAYLSKKAGMKVVLVDKNPQALIR---N--------YADEFYCFDVIKEPEKLLELS--KRVDA 66 (363)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCTTCTTT---T--------TSSEEEECCTTTCHHHHHHHH--TSSSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCChhH---h--------hCCEEEECCCCcCHHHHHHHh--cCCCE
Confidence 79999999 5899999999999999999999865432210 0 0113444554 4566666555 67998
Q ss_pred EEEcC
Q 015080 149 VMHFA 153 (413)
Q Consensus 149 vi~~A 153 (413)
|+-..
T Consensus 67 v~~~~ 71 (363)
T 4ffl_A 67 VLPVN 71 (363)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 87543
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.011 Score=55.03 Aligned_cols=71 Identities=20% Similarity=0.192 Sum_probs=49.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
.+|||+||+|.+|...+..+...|++|+++++. ++ .+.++++. .. .. .|..+.+.+.+.+ .++|++|
T Consensus 154 ~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~----~~-~~~~~~lG---a~-~~--i~~~~~~~~~~~~--~g~D~v~ 220 (321)
T 3tqh_A 154 DVVLIHAGAGGVGHLAIQLAKQKGTTVITTASK----RN-HAFLKALG---AE-QC--INYHEEDFLLAIS--TPVDAVI 220 (321)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEECH----HH-HHHHHHHT---CS-EE--EETTTSCHHHHCC--SCEEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHcCCEEEEEecc----ch-HHHHHHcC---CC-EE--EeCCCcchhhhhc--cCCCEEE
Confidence 789999999999999999999999999887632 11 33344442 11 12 3444444344444 6899999
Q ss_pred EcCc
Q 015080 151 HFAA 154 (413)
Q Consensus 151 ~~Ag 154 (413)
++.|
T Consensus 221 d~~g 224 (321)
T 3tqh_A 221 DLVG 224 (321)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9987
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.024 Score=51.18 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=28.5
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHC-CCEEEEE-ecC
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKD-SYRVTIV-DNL 103 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~-G~~V~~~-~r~ 103 (413)
.|++|.|+|++|.+|+.+++.+.+. +.+++.+ ++.
T Consensus 6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~ 42 (272)
T 4f3y_A 6 SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRT 42 (272)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCT
T ss_pred cccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 3589999999999999999999876 6677664 443
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0086 Score=57.06 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=47.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCC----C-HHHHHHHhhcC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG----D-AKAVNKFFSEN 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~----d-~~~~~~~~~~~ 144 (413)
.+|||+|+ |.||...+..+...|+ +|++++++..+. +.++++ +.. .. .|.. + .+.+.++.. .
T Consensus 195 ~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~----~~a~~l---Ga~-~v--i~~~~~~~~~~~~i~~~~~-g 262 (378)
T 3uko_A 195 SNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKY----ETAKKF---GVN-EF--VNPKDHDKPIQEVIVDLTD-G 262 (378)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHH----HHHHTT---TCC-EE--ECGGGCSSCHHHHHHHHTT-S
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHH----HHHHHc---CCc-EE--EccccCchhHHHHHHHhcC-C
Confidence 78999998 9999999988888899 799987544332 233333 111 12 2332 2 234444443 4
Q ss_pred CCcEEEEcCcc
Q 015080 145 AFDAVMHFAAV 155 (413)
Q Consensus 145 ~~dvvi~~Ag~ 155 (413)
++|+||.++|.
T Consensus 263 g~D~vid~~g~ 273 (378)
T 3uko_A 263 GVDYSFECIGN 273 (378)
T ss_dssp CBSEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 89999999883
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.036 Score=52.83 Aligned_cols=101 Identities=19% Similarity=0.185 Sum_probs=62.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEcc----------------CCCH
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD----------------LGDA 134 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D----------------l~d~ 134 (413)
.+|+|+|+ |-+|...++.+...|++|+++|+.....+ .+.++ +..++..+ +++.
T Consensus 191 ~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~----~~~~~-----G~~~~~~~~~~~~d~~~~~~ya~e~s~~ 260 (405)
T 4dio_A 191 AKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKE----QVASL-----GAKFIAVEDEEFKAAETAGGYAKEMSGE 260 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHH----HHHHT-----TCEECCCCC-----------------CH
T ss_pred CEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHH----HHHHc-----CCceeecccccccccccccchhhhcchh
Confidence 78999996 99999999999999999999987543322 22222 12222222 2333
Q ss_pred ------HHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 135 ------KAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 135 ------~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
+.+.+++ .+.|+||+++.+..... +. ..++..++.|+. ..-||-+|.
T Consensus 261 ~~~~~~~~l~e~l--~~aDVVI~tvlipg~~a----p~-------Lvt~emv~~Mk~--GsVIVDvA~ 313 (405)
T 4dio_A 261 YQVKQAALVAEHI--AKQDIVITTALIPGRPA----PR-------LVTREMLDSMKP--GSVVVDLAV 313 (405)
T ss_dssp HHHHHHHHHHHHH--HTCSEEEECCCCSSSCC----CC-------CBCHHHHTTSCT--TCEEEETTG
T ss_pred hhhhhHhHHHHHh--cCCCEEEECCcCCCCCC----CE-------EecHHHHhcCCC--CCEEEEEeC
Confidence 4667777 68999999886542111 00 002345555653 346777776
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.32 Score=44.18 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=56.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
++|+|.|+||-.|+.+++.|.+.|++++... ++..... + . .++.. ..++.++.++.++|++|
T Consensus 8 ~~VaVvGasG~~G~~~~~~l~~~g~~~v~~V-nP~~~g~--~----i----~G~~v-------y~sl~el~~~~~~Dv~I 69 (288)
T 1oi7_A 8 TRVLVQGITGREGQFHTKQMLTYGTKIVAGV-TPGKGGM--E----V----LGVPV-------YDTVKEAVAHHEVDASI 69 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEE-CTTCTTC--E----E----TTEEE-------ESSHHHHHHHSCCSEEE
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCeEEEEE-CCCCCCc--e----E----CCEEe-------eCCHHHHhhcCCCCEEE
Confidence 7899999999999999999999999865332 2221100 0 0 11221 12234444334789998
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
-+.- + ..+..+++.+.+.+++.+|.+++
T Consensus 70 i~vp----------~--------~~~~~~~~ea~~~Gi~~vVi~t~ 97 (288)
T 1oi7_A 70 IFVP----------A--------PAAADAALEAAHAGIPLIVLITE 97 (288)
T ss_dssp ECCC----------H--------HHHHHHHHHHHHTTCSEEEECCS
T ss_pred EecC----------H--------HHHHHHHHHHHHCCCCEEEEECC
Confidence 5532 1 22456777788889887887776
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.026 Score=50.99 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=45.5
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
.+.| |+++|.|+++-+|..++..|+..|++|+++.+..+ .+.+.+ ..
T Consensus 158 ~l~G-k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~------------------------------~L~~~~--~~ 204 (285)
T 3l07_A 158 KTEG-AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT------------------------------DLKSHT--TK 204 (285)
T ss_dssp CCTT-CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS------------------------------SHHHHH--TT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch------------------------------hHHHhc--cc
Confidence 3557 99999999999999999999999999998753211 233445 67
Q ss_pred CcEEEEcCccc
Q 015080 146 FDAVMHFAAVA 156 (413)
Q Consensus 146 ~dvvi~~Ag~~ 156 (413)
.|+||...|..
T Consensus 205 ADIVI~Avg~p 215 (285)
T 3l07_A 205 ADILIVAVGKP 215 (285)
T ss_dssp CSEEEECCCCT
T ss_pred CCEEEECCCCC
Confidence 89999998853
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.011 Score=56.75 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=49.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC----HHHHHHHhhcCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD----AKAVNKFFSENA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d----~~~~~~~~~~~~ 145 (413)
.+|||+|+ |.||...+..+...|+ +|++++++..+ .+.++++ ++..+ |..+ .+.+.++....+
T Consensus 187 ~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~----~~~a~~l-----Ga~~i--~~~~~~~~~~~~~~~~~g~g 254 (398)
T 2dph_A 187 SHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPER----LKLLSDA-----GFETI--DLRNSAPLRDQIDQILGKPE 254 (398)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHH----HHHHHTT-----TCEEE--ETTSSSCHHHHHHHHHSSSC
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHH----HHHHHHc-----CCcEE--cCCCcchHHHHHHHHhCCCC
Confidence 79999996 9999999988888899 89998754322 2233332 23333 4333 345555543347
Q ss_pred CcEEEEcCcc
Q 015080 146 FDAVMHFAAV 155 (413)
Q Consensus 146 ~dvvi~~Ag~ 155 (413)
+|+||.++|.
T Consensus 255 ~Dvvid~~g~ 264 (398)
T 2dph_A 255 VDCGVDAVGF 264 (398)
T ss_dssp EEEEEECSCT
T ss_pred CCEEEECCCC
Confidence 9999999984
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.068 Score=47.44 Aligned_cols=158 Identities=13% Similarity=0.116 Sum_probs=86.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHh---hcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFF---SENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~---~~~~~ 146 (413)
++|.|.|++|.+|+.+++.+.+. +++|+.+.....+. .+.+. ..+. +..|.+.++.+.+.+ .+.+.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl---~~~~~------~~~D-vvIDfT~p~a~~~~~~~a~~~g~ 70 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPL---SLLTD------GNTE-VVIDFTHPDVVMGNLEFLIDNGI 70 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCT---HHHHH------TTCC-EEEECSCTTTHHHHHHHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCH---HHHhc------cCCc-EEEEccChHHHHHHHHHHHHcCC
Confidence 36999999999999999999876 89987654322221 12211 0122 456888877666544 23678
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceec-----------CCC-CCCCCCCCCCC
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATY-----------GEP-EKMPITEETPQ 214 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~-----------~~~-~~~~~~e~~~~ 214 (413)
++|+-..|.. .+. ...+.+++++.....+++.++.+.- ... +...+-|....
T Consensus 71 ~~VigTTG~~--------~e~--------~~~l~~aa~~~~~~~vv~a~N~siGv~ll~~l~~~aa~~~~dieIiE~HH~ 134 (245)
T 1p9l_A 71 HAVVGTTGFT--------AER--------FQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHP 134 (245)
T ss_dssp EEEECCCCCC--------HHH--------HHHHHHHHHTSTTCEEEECSCCCHHHHHHHHHHHHHGGGCSEEEEEEEECT
T ss_pred CEEEcCCCCC--------HHH--------HHHHHHHHHhCCCCCEEEECCccHHHHHHHHHHHHHHhhcCCEEEEECccc
Confidence 8888655521 111 1234444544412356776664430 000 11112222222
Q ss_pred CC-CChhHHHHHHHHHHHHHHHh-------------------hCCCcEEEEeecceecCC
Q 015080 215 AP-INPYGKAKKMAEDIILDFSK-------------------NSDMAVMILRYFNVIGSD 254 (413)
Q Consensus 215 ~~-~~~Y~~sK~~~e~~~~~~~~-------------------~~gi~~~~lrp~~v~G~~ 254 (413)
.. -.|-+.++..+|........ ..++.+.++|-|.+.|..
T Consensus 135 ~K~DaPSGTA~~lae~i~~~~~~~~~~~~~~~~~~~g~r~~~~~~i~i~s~R~g~ivg~h 194 (245)
T 1p9l_A 135 HKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQ 194 (245)
T ss_dssp TCCSSSCHHHHHHHHHHHHHTTTSCCCCCCCCSCCTTTTCEEETTEEEEEEECTTCCEEE
T ss_pred CCCCCCCHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCcceEEEEECCCCCeEE
Confidence 11 11236666677766543210 026788899999988864
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.058 Score=49.48 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=59.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhh-------hhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKV-------LQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
++|-+.| .|.+|..+|+.|++.|++|++.+|+..+.+.+.+. ..+. -....++..=+.+...+++.+..
T Consensus 6 ~kIgfIG-LG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~---~~~~dvvi~~l~~~~~~~~v~~~ 81 (297)
T 4gbj_A 6 EKIAFLG-LGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDA---ITPGGIVFSVLADDAAVEELFSM 81 (297)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGG---CCTTCEEEECCSSHHHHHHHSCH
T ss_pred CcEEEEe-cHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHH---HhcCCceeeeccchhhHHHHHHH
Confidence 5799998 79999999999999999999999876655543321 1111 12344555556666665544321
Q ss_pred ------CCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Q 015080 144 ------NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIY 193 (413)
Q Consensus 144 ------~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~ 193 (413)
.+-+++|.+..+. +. .++.+.+.+.+.++ +++-
T Consensus 82 ~~~~~~~~~~iiid~sT~~--------p~--------~~~~~~~~~~~~g~-~~ld 120 (297)
T 4gbj_A 82 ELVEKLGKDGVHVSMSTIS--------PE--------TSRQLAQVHEWYGA-HYVG 120 (297)
T ss_dssp HHHHHHCTTCEEEECSCCC--------HH--------HHHHHHHHHHHTTC-EEEE
T ss_pred HHHhhcCCCeEEEECCCCC--------hH--------HHHHHHHHHHhcCC-ceec
Confidence 3445777665432 22 24556677777765 4543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.01 Score=55.65 Aligned_cols=71 Identities=20% Similarity=0.167 Sum_probs=46.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH---HHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA---KAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~~d 147 (413)
.+|||+|+ |.+|...+..+...|++|++++++.. ..+.++++ +.. .. .|..+. +.+.+.. .++|
T Consensus 168 ~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~----~~~~~~~l---Ga~-~~--i~~~~~~~~~~~~~~~--g~~d 234 (340)
T 3s2e_A 168 QWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDA----KLNLARRL---GAE-VA--VNARDTDPAAWLQKEI--GGAH 234 (340)
T ss_dssp SEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHT---TCS-EE--EETTTSCHHHHHHHHH--SSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHH----HHHHHHHc---CCC-EE--EeCCCcCHHHHHHHhC--CCCC
Confidence 78999997 88999999999999999999876432 22333333 122 12 233332 2333322 5899
Q ss_pred EEEEcCc
Q 015080 148 AVMHFAA 154 (413)
Q Consensus 148 vvi~~Ag 154 (413)
++|.++|
T Consensus 235 ~vid~~g 241 (340)
T 3s2e_A 235 GVLVTAV 241 (340)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 9999987
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.034 Score=53.01 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=54.3
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
+|+|||+|+ |.+|..+++.+.+.|++|++++...... .... .-..+..|..|.+.+.+++++.++|.|
T Consensus 11 ~~~ili~g~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~--~~~~---------~d~~~~~~~~d~~~l~~~~~~~~~d~v 78 (391)
T 1kjq_A 11 ATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAP--AMHV---------AHRSHVINMLDGDALRRVVELEKPHYI 78 (391)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCG--GGGG---------SSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECCCCCc--hhhh---------ccceEECCCCCHHHHHHHHHHcCCCEE
Confidence 389999986 7899999999999999999988543321 1110 113456788999999998877789999
Q ss_pred EEcC
Q 015080 150 MHFA 153 (413)
Q Consensus 150 i~~A 153 (413)
+...
T Consensus 79 ~~~~ 82 (391)
T 1kjq_A 79 VPEI 82 (391)
T ss_dssp EECS
T ss_pred EECC
Confidence 8643
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.023 Score=54.95 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=50.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
++|+|.| +|.+|+.+++.+.+.|++|++++...... .. .+ .-..+..|..|.+.+.+++ .++|+|+
T Consensus 36 ~~IlIlG-~G~lg~~~~~aa~~lG~~v~v~d~~~~~p--~~-~~--------ad~~~~~~~~d~~~l~~~a--~~~D~V~ 101 (419)
T 4e4t_A 36 AWLGMVG-GGQLGRMFCFAAQSMGYRVAVLDPDPASP--AG-AV--------ADRHLRAAYDDEAALAELA--GLCEAVS 101 (419)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCTTCH--HH-HH--------SSEEECCCTTCHHHHHHHH--HHCSEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCCcCc--hh-hh--------CCEEEECCcCCHHHHHHHH--hcCCEEE
Confidence 8999999 58999999999999999999987432211 11 11 1235568999999999999 5789988
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.026 Score=50.91 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=32.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEec
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 102 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r 102 (413)
.+.| |+++|.|+++-+|+.++..|+..|++|+++.+
T Consensus 158 ~l~G-k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs 193 (286)
T 4a5o_A 158 DLYG-MDAVVVGASNIVGRPMALELLLGGCTVTVTHR 193 (286)
T ss_dssp CCTT-CEEEEECTTSTTHHHHHHHHHHTTCEEEEECT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHCCCeEEEEeC
Confidence 3557 99999999999999999999999999998753
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.013 Score=56.25 Aligned_cols=36 Identities=22% Similarity=0.112 Sum_probs=31.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
+.+ ++|+|+|+ |.+|..+++.+...|++|++++++.
T Consensus 170 l~g-~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~ 205 (401)
T 1x13_A 170 VPP-AKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRP 205 (401)
T ss_dssp ECC-CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred cCC-CEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 345 89999995 9999999999999999999987643
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.014 Score=55.18 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=46.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCC--C-HHHHHHHhhc--C
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG--D-AKAVNKFFSE--N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d-~~~~~~~~~~--~ 144 (413)
.+|||+|+ |.+|...+..+...|+ +|++++++.. ..+.++++ +.. .. .|.. + .+..+++.+. .
T Consensus 173 ~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~----~~~~a~~l---Ga~-~v--i~~~~~~~~~~~~~i~~~~~~ 241 (356)
T 1pl8_A 173 HKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSAT----RLSKAKEI---GAD-LV--LQISKESPQEIARKVEGQLGC 241 (356)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH----HHHHHHHT---TCS-EE--EECSSCCHHHHHHHHHHHHTS
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH----HHHHHHHh---CCC-EE--EcCcccccchHHHHHHHHhCC
Confidence 78999996 9999999988888999 8999875332 22333333 111 22 2433 2 3222222211 5
Q ss_pred CCcEEEEcCc
Q 015080 145 AFDAVMHFAA 154 (413)
Q Consensus 145 ~~dvvi~~Ag 154 (413)
++|+||+++|
T Consensus 242 g~D~vid~~g 251 (356)
T 1pl8_A 242 KPEVTIECTG 251 (356)
T ss_dssp CCSEEEECSC
T ss_pred CCCEEEECCC
Confidence 7999999987
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.72 E-value=0.028 Score=53.37 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=47.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC-----HHHHHHHhhcC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD-----AKAVNKFFSEN 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-----~~~~~~~~~~~ 144 (413)
.+|||+|+ |.||..++..+...|+ +|++++++..+ .+.++++ +.. .. .|..+ .+.+.++.. .
T Consensus 193 ~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~----~~~~~~l---Ga~-~v--i~~~~~~~~~~~~~~~~~~-~ 260 (374)
T 2jhf_A 193 STCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDK----FAKAKEV---GAT-EC--VNPQDYKKPIQEVLTEMSN-G 260 (374)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGG----HHHHHHT---TCS-EE--ECGGGCSSCHHHHHHHHTT-S
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHH----HHHHHHh---CCc-eE--ecccccchhHHHHHHHHhC-C
Confidence 78999995 9999999999999999 79888754332 2233333 111 12 23332 223444332 4
Q ss_pred CCcEEEEcCcc
Q 015080 145 AFDAVMHFAAV 155 (413)
Q Consensus 145 ~~dvvi~~Ag~ 155 (413)
++|+||+++|.
T Consensus 261 g~D~vid~~g~ 271 (374)
T 2jhf_A 261 GVDFSFEVIGR 271 (374)
T ss_dssp CBSEEEECSCC
T ss_pred CCcEEEECCCC
Confidence 79999999973
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.022 Score=55.08 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=53.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC-------C------------CCchhhhhhhhhcCCCCceEEEEcc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-------R------------GNIGAVKVLQELFPEPGRLQFIYAD 130 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~-------~------------~~~~~~~~~~~~~~~~~~~~~~~~D 130 (413)
.+|+|.|+ |++|.++++.|+..|. +++++|... | +.+.+++.++++.+. -.++.+..+
T Consensus 41 ~~VlvvG~-GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~-v~v~~~~~~ 118 (434)
T 1tt5_B 41 CKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN-CNVVPHFNK 118 (434)
T ss_dssp CCEEEECS-STHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTT-CCCEEEESC
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCC-CEEEEEecc
Confidence 78999995 9999999999999998 788887432 1 122234455555443 457777777
Q ss_pred CCCHHHHHHHhhcCCCcEEEEcC
Q 015080 131 LGDAKAVNKFFSENAFDAVMHFA 153 (413)
Q Consensus 131 l~d~~~~~~~~~~~~~dvvi~~A 153 (413)
+++.. .+++ .++|+||.+.
T Consensus 119 i~~~~--~~~~--~~~DlVi~~~ 137 (434)
T 1tt5_B 119 IQDFN--DTFY--RQFHIIVCGL 137 (434)
T ss_dssp GGGBC--HHHH--TTCSEEEECC
T ss_pred cchhh--HHHh--cCCCEEEECC
Confidence 66533 3556 6789999874
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0082 Score=56.57 Aligned_cols=74 Identities=15% Similarity=0.092 Sum_probs=47.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC---HHHHHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD---AKAVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d---~~~~~~~~~~~~~ 146 (413)
.+|||+|+ |.||...+..+...|+ +|++++++. +..+.++++. .. .+ .|..+ .+.+.++....++
T Consensus 168 ~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~----~~~~~~~~lG---a~-~v--i~~~~~~~~~~v~~~t~g~g~ 236 (352)
T 3fpc_A 168 DTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRK----HCCDIALEYG---AT-DI--INYKNGDIVEQILKATDGKGV 236 (352)
T ss_dssp CCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCH----HHHHHHHHHT---CC-EE--ECGGGSCHHHHHHHHTTTCCE
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCH----HHHHHHHHhC---Cc-eE--EcCCCcCHHHHHHHHcCCCCC
Confidence 78999995 9999999988888899 799876432 2233444442 11 22 23222 2344444433579
Q ss_pred cEEEEcCcc
Q 015080 147 DAVMHFAAV 155 (413)
Q Consensus 147 dvvi~~Ag~ 155 (413)
|+||+++|.
T Consensus 237 D~v~d~~g~ 245 (352)
T 3fpc_A 237 DKVVIAGGD 245 (352)
T ss_dssp EEEEECSSC
T ss_pred CEEEECCCC
Confidence 999999874
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.015 Score=54.86 Aligned_cols=74 Identities=16% Similarity=0.321 Sum_probs=47.4
Q ss_pred eEEEEEcCCChHHHHH-HHHH-HHCCCE-EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH--HHHHHHhhcCC
Q 015080 71 THVLVTGGAGYIGSHA-ALRL-LKDSYR-VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA--KAVNKFFSENA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~l-a~~L-~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~--~~~~~~~~~~~ 145 (413)
.+|||+|| |.||... +..+ ...|++ |++++++.... ...+.++++ ++..+ |..+. .++.++ . .+
T Consensus 174 ~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~-~~~~~~~~l-----Ga~~v--~~~~~~~~~i~~~-~-gg 242 (357)
T 2b5w_A 174 SSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPD-PTIDIIEEL-----DATYV--DSRQTPVEDVPDV-Y-EQ 242 (357)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSC-HHHHHHHHT-----TCEEE--ETTTSCGGGHHHH-S-CC
T ss_pred CEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccH-HHHHHHHHc-----CCccc--CCCccCHHHHHHh-C-CC
Confidence 68999999 9999999 7777 677997 99988644310 012233332 23443 44432 224444 3 48
Q ss_pred CcEEEEcCcc
Q 015080 146 FDAVMHFAAV 155 (413)
Q Consensus 146 ~dvvi~~Ag~ 155 (413)
+|+||+++|.
T Consensus 243 ~Dvvid~~g~ 252 (357)
T 2b5w_A 243 MDFIYEATGF 252 (357)
T ss_dssp EEEEEECSCC
T ss_pred CCEEEECCCC
Confidence 9999999873
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.029 Score=53.23 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=47.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC-----HHHHHHHhhcC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD-----AKAVNKFFSEN 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-----~~~~~~~~~~~ 144 (413)
.+|||+|+ |.||...+..+...|+ +|++++++..+ .+.++++ +.. .. .|..+ .+.+.++.. .
T Consensus 194 ~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~----~~~~~~l---Ga~-~v--i~~~~~~~~~~~~~~~~~~-~ 261 (374)
T 1cdo_A 194 STCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDK----FEKAKVF---GAT-DF--VNPNDHSEPISQVLSKMTN-G 261 (374)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGG----HHHHHHT---TCC-EE--ECGGGCSSCHHHHHHHHHT-S
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHH----HHHHHHh---CCc-eE--EeccccchhHHHHHHHHhC-C
Confidence 78999995 9999999999989999 79888654322 2233333 111 12 23332 223444433 4
Q ss_pred CCcEEEEcCcc
Q 015080 145 AFDAVMHFAAV 155 (413)
Q Consensus 145 ~~dvvi~~Ag~ 155 (413)
++|+||+++|.
T Consensus 262 g~D~vid~~g~ 272 (374)
T 1cdo_A 262 GVDFSLECVGN 272 (374)
T ss_dssp CBSEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 79999999973
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.014 Score=53.76 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=49.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
.+.+ ++|+|.|+ |.||+.+++.|...|++|++++|...+ .+.+.+. ++..+. .+++.+++ ..
T Consensus 154 ~l~g-~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~----~~~~~~~-----g~~~~~-----~~~l~~~l--~~ 215 (300)
T 2rir_A 154 TIHG-SQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAH----LARITEM-----GLVPFH-----TDELKEHV--KD 215 (300)
T ss_dssp CSTT-SEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHT-----TCEEEE-----GGGHHHHS--TT
T ss_pred CCCC-CEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHC-----CCeEEc-----hhhHHHHh--hC
Confidence 3556 89999995 999999999999999999999864321 1112221 222221 23456666 67
Q ss_pred CcEEEEcCcc
Q 015080 146 FDAVMHFAAV 155 (413)
Q Consensus 146 ~dvvi~~Ag~ 155 (413)
.|+|+.+...
T Consensus 216 aDvVi~~~p~ 225 (300)
T 2rir_A 216 IDICINTIPS 225 (300)
T ss_dssp CSEEEECCSS
T ss_pred CCEEEECCCh
Confidence 8999988763
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0092 Score=56.01 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=58.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH---HHHHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA---KAVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~~ 146 (413)
.+|||+|| |.+|..++..+...|+ +|++++++..+ .+.++++ . . . ..|..+. +.+.++. ..++
T Consensus 166 ~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~----~~~~~~l-a--~--~--v~~~~~~~~~~~~~~~~-~~g~ 232 (343)
T 2dq4_A 166 KSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYR----LAFARPY-A--D--R--LVNPLEEDLLEVVRRVT-GSGV 232 (343)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHH----HGGGTTT-C--S--E--EECTTTSCHHHHHHHHH-SSCE
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHH----HHHHHHh-H--H--h--ccCcCccCHHHHHHHhc-CCCC
Confidence 78999999 9999999999999999 89998754222 2222222 1 1 1 1344332 2333333 3579
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
|+||+++|.. ......++.++. .+++|.+++
T Consensus 233 D~vid~~g~~-----------------~~~~~~~~~l~~--~G~iv~~g~ 263 (343)
T 2dq4_A 233 EVLLEFSGNE-----------------AAIHQGLMALIP--GGEARILGI 263 (343)
T ss_dssp EEEEECSCCH-----------------HHHHHHHHHEEE--EEEEEECCC
T ss_pred CEEEECCCCH-----------------HHHHHHHHHHhc--CCEEEEEec
Confidence 9999999831 112334444443 358988876
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.014 Score=53.45 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=48.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
.+.+ ++|+|.| .|.||+.+++.|...|++|++++|...+ .+.+.+. ++..+ + .+++.+++ ..
T Consensus 152 ~l~g-~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~dr~~~~----~~~~~~~-----g~~~~--~---~~~l~~~l--~~ 213 (293)
T 3d4o_A 152 TIHG-ANVAVLG-LGRVGMSVARKFAALGAKVKVGARESDL----LARIAEM-----GMEPF--H---ISKAAQEL--RD 213 (293)
T ss_dssp CSTT-CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHT-----TSEEE--E---GGGHHHHT--TT
T ss_pred CCCC-CEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECCHHH----HHHHHHC-----CCeec--C---hhhHHHHh--cC
Confidence 3456 8999999 6999999999999999999999864321 1112221 23332 1 23456666 67
Q ss_pred CcEEEEcCc
Q 015080 146 FDAVMHFAA 154 (413)
Q Consensus 146 ~dvvi~~Ag 154 (413)
.|+|+.+..
T Consensus 214 aDvVi~~~p 222 (293)
T 3d4o_A 214 VDVCINTIP 222 (293)
T ss_dssp CSEEEECCS
T ss_pred CCEEEECCC
Confidence 899998874
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.015 Score=54.50 Aligned_cols=76 Identities=21% Similarity=0.245 Sum_probs=48.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
.+|+|+|+ |.+|...+..+... |.+|++++++.. ..+.++++ +.. ..+..+-...+.+.++....++|++
T Consensus 173 ~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~----~~~~~~~l---Ga~-~~i~~~~~~~~~v~~~t~g~g~d~v 243 (345)
T 3jv7_A 173 STAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDD----RLALAREV---GAD-AAVKSGAGAADAIRELTGGQGATAV 243 (345)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHH----HHHHHHHT---TCS-EEEECSTTHHHHHHHHHGGGCEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHH----HHHHHHHc---CCC-EEEcCCCcHHHHHHHHhCCCCCeEE
Confidence 78999997 99999988877776 789999875432 23333443 122 2222221223445555544589999
Q ss_pred EEcCcc
Q 015080 150 MHFAAV 155 (413)
Q Consensus 150 i~~Ag~ 155 (413)
|.++|.
T Consensus 244 ~d~~G~ 249 (345)
T 3jv7_A 244 FDFVGA 249 (345)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 999883
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 413 | ||||
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-78 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 2e-75 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 3e-73 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 7e-71 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 1e-70 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 6e-68 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-64 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 4e-64 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 1e-60 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-58 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 5e-57 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-56 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 7e-56 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 4e-51 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 2e-48 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 2e-45 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 3e-30 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 1e-28 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 8e-25 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 3e-24 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 1e-20 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 1e-17 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 1e-16 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 1e-16 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 2e-16 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 3e-15 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 1e-11 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 2e-11 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 2e-07 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 2e-07 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 2e-07 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 2e-07 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 4e-07 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 4e-07 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 4e-07 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 4e-07 | |
| d1gega_ | 255 | c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl | 5e-07 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 6e-07 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 7e-07 | |
| d2rhca1 | 257 | c.2.1.2 (A:5-261) beta-keto acyl carrier protein r | 9e-07 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 1e-06 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 1e-06 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 1e-06 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 1e-06 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 1e-06 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 1e-06 | |
| d1ae1a_ | 258 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 1e-06 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 2e-06 | |
| d1iy8a_ | 258 | c.2.1.2 (A:) Levodione reductase {Corynebacterium | 2e-06 | |
| d1ja9a_ | 259 | c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc | 2e-06 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 2e-06 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 2e-06 | |
| d1geea_ | 261 | c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat | 2e-06 | |
| d1edoa_ | 244 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 3e-06 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 3e-06 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 3e-06 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 4e-06 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 4e-06 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 6e-06 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 7e-06 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 7e-06 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 2e-05 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 2e-05 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 2e-05 | |
| d1nffa_ | 244 | c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob | 2e-05 | |
| d2bd0a1 | 240 | c.2.1.2 (A:2-241) Bacterial sepiapterin reductase | 3e-05 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 5e-05 | |
| d1uzma1 | 237 | c.2.1.2 (A:9-245) beta-keto acyl carrier protein r | 6e-05 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 7e-05 | |
| d1ulsa_ | 242 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 1e-04 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 1e-04 | |
| d1gz6a_ | 302 | c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do | 2e-04 | |
| d1zmta1 | 252 | c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag | 2e-04 | |
| d1jtva_ | 285 | c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi | 3e-04 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 4e-04 | |
| d1wmaa1 | 275 | c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox | 4e-04 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 5e-04 | |
| d1mxha_ | 266 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 0.001 | |
| d1oaaa_ | 259 | c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus | 0.002 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 0.002 | |
| d1fjha_ | 257 | c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase | 0.003 | |
| d1uaya_ | 241 | c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena | 0.004 | |
| d1q7ba_ | 243 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 0.004 |
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 243 bits (621), Expect = 2e-78
Identities = 127/340 (37%), Positives = 177/340 (52%), Gaps = 9/340 (2%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ + + ++A D V+HFA + VGES PL+YY N + TL ++ +M V I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 193 YSSTCATYGEPEKMPITEET-PQAPINPYGKAKKMAEDIILD-FSKNSDMAVMILRYFNV 250
+SS+ YG+ K+P E P +PYGK+K M E I+ D D ++ +LRYFN
Sbjct: 121 FSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 251 IGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310
+G+ P G +GE P+ + A G L + G DY T DGT VRDYI V
Sbjct: 181 VGAHPSGDMGEDPQGIPN---NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237
Query: 311 DLVDAHV-KALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 369
DL D HV + A V IYN+G G G SV + V A KA + + PRR GD
Sbjct: 238 DLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLP 297
Query: 370 EVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
++D +K ELNW T L E + W WQ H GY
Sbjct: 298 AYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 235 bits (601), Expect = 2e-75
Identities = 84/338 (24%), Positives = 137/338 (40%), Gaps = 39/338 (11%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+TGGAG++GSH +L+ D + VT+VDN G V+ + +L
Sbjct: 4 ILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW---------IGHENFELI 54
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ V + E D + H A+ A +P+K T TL +L R G L+
Sbjct: 55 NHDVVEPLYIE--VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLL 111
Query: 193 YSSTCATYGEPEKMPITEE-----TPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRY 247
+ST YG+PE P +E+ P P Y + K++AE + + K + V + R
Sbjct: 112 LASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARI 171
Query: 248 FNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307
FN G PR + + +S A +G L V G G+ R +
Sbjct: 172 FNTFG----------PRMHMNDGRVVSNFILQALQGEP--LTVYG------SGSQTRAFQ 213
Query: 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 367
V+DLV+ V + N+G + ++ EF + K + ++ + D
Sbjct: 214 YVSDLVNGLVALMNSNVS---SPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDD 270
Query: 368 YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
+ D K +L L W L+E L A + +
Sbjct: 271 PQKRKPDIKKAKLMLGWEPVVP-LEEGLNKAIHYFRKE 307
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 231 bits (590), Expect = 3e-73
Identities = 77/371 (20%), Positives = 135/371 (36%), Gaps = 58/371 (15%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTI-VDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
+L+TGGAG+IGS ++K++ + +D L+ G ++ L ++ R F +AD+
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYA--GNLESLSDISESN-RYNFEHADI 59
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT- 190
D+ + + F + DAVMH AA ++V S P + T +LE ++
Sbjct: 60 CDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALG 119
Query: 191 --------LIYSSTCATYGEPEKMPI----------TEETPQAPINPYGKAKKMAEDIIL 232
+ ST YG+ TE T AP +PY +K ++ ++
Sbjct: 120 EDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 233 DFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG--LKV 290
+ + + ++ N G + + G L +
Sbjct: 180 AWRRTYGLPTIVTNCSNNYG----------------PYHFPEKLIPLVILNALEGKPLPI 223
Query: 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEA--- 347
G G +RD++ V D A + + K YN+G + + V
Sbjct: 224 YG------KGDQIRDWLYVEDHARALHMVVT--EGKAGETYNIGGHNEKKNLDVVFTICD 275
Query: 348 -----CKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQ 402
KATS ++ Y RPG D KI EL W T + + W
Sbjct: 276 LLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLET-FESGIRKTVEWY 334
Query: 403 KSHRGGYASII 413
++ ++
Sbjct: 335 LANTQWVNNVK 345
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 224 bits (572), Expect = 7e-71
Identities = 127/348 (36%), Positives = 177/348 (50%), Gaps = 17/348 (4%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGGAGYIGSH + L+++ Y + DNLS +V L+ L + F DL
Sbjct: 4 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKH--HIPFYEVDLC 61
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D K + K F E D+V+HFA + VGEST PL+YYHN T+V+LE M ++ V +
Sbjct: 62 DRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFV 121
Query: 193 YSSTCATYGE----PEKMPITEETPQAPINPYGKAKKMAEDIILDF--SKNSDMAVMILR 246
+SS+ YG+ P +PI EE P P NPYG K E+I+ D S ILR
Sbjct: 122 FSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILR 181
Query: 247 YFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306
YFN IG+ P G +GE P + A G L + G DY + DGT +RDY
Sbjct: 182 YFNPIGAHPSGLIGEDPL---GIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDY 238
Query: 307 IDVNDLVDAHVKALERA-----QPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYE 361
I V DL H+ AL+ +N+G+GKG +V E A KA+ ++
Sbjct: 239 IHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVT 298
Query: 362 PRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
RR GD + + P + + EL W + +++S + W+W + GY
Sbjct: 299 GRRAGDVLNLTAKPDRAKRELKWQTEL-QVEDSCKDLWKWTTENPFGY 345
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 224 bits (572), Expect = 1e-70
Identities = 84/372 (22%), Positives = 130/372 (34%), Gaps = 58/372 (15%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNL-SRGNIGAVKVL-QELFPEPGRLQFIYAD 130
L+TG G GS+ A LL+ Y V + S N V + Q+ + Y D
Sbjct: 4 ALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGD 63
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
L D + + E D V + A+++V S P TL +LE++ G++
Sbjct: 64 LSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEK 123
Query: 191 ---LIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRY 247
+ST YG +++P E TP P +PY AK A I +++ ++ M
Sbjct: 124 KTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGIL 183
Query: 248 FNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307
FN PR R ++ A I GL+ + +RD+
Sbjct: 184 FNHES----------PR---RGETFVTRKITRAIANIAQGLESC---LYLGNMDSLRDWG 227
Query: 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSAN------------ 355
D V L++ QP + + TG SV++FVE
Sbjct: 228 HAKDYVKMQWMMLQQEQP---EDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKG 284
Query: 356 -------------------IKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYT---NLQE 393
I V RP + + DPTK +L W + T + E
Sbjct: 285 IVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSE 344
Query: 394 SLEIAWRWQKSH 405
+ K H
Sbjct: 345 MVANDLEAAKKH 356
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 216 bits (550), Expect = 6e-68
Identities = 79/347 (22%), Positives = 138/347 (39%), Gaps = 35/347 (10%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSY------RVTIVDNLSRGNIGAVKVLQELFPEPGRLQF 126
+LVTGGAG+IGSH +LL +Y V ++D+L+ G L + +P RL+F
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYA--GNRANLAPVDADP-RLRF 59
Query: 127 IYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH 186
++ D+ DA DA++HFAA ++V S + T +L+
Sbjct: 60 VHGDIRDAG--LLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA 117
Query: 187 GVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILR 246
GV +++ ST YG + TE +P P +PY +K ++ + + + + V I R
Sbjct: 118 GVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRITR 177
Query: 247 YFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306
N G + ++ G + DG VR++
Sbjct: 178 CCNNYG----------------PYQHPEKLIPLFVTNLLDGGTLP----LYGDGANVREW 217
Query: 307 IDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYE-PRRP 365
+ +D L + IY++G G + +E + A+ + + R
Sbjct: 218 VHTDDHCRGIALVLA--GGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRK 275
Query: 366 GDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYASI 412
G D KI EL + + + + L RW + +RG + +
Sbjct: 276 GHDLRYSLDGGKIERELGYRPQV-SFADGLARTVRWYRENRGWWEPL 321
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 208 bits (530), Expect = 1e-64
Identities = 131/346 (37%), Positives = 180/346 (52%), Gaps = 11/346 (3%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFP----EPGRLQFIY 128
VLVTGGAGYIGSH L LL+ Y ++DN G + + L ++F
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV 188
D+ D A+ + F + +F AV+HFA + VGES PL YY + T+ +LE M HGV
Sbjct: 65 MDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGV 124
Query: 189 DTLIYSSTCATYGEPEKMPITEETPQ-APINPYGKAKKMAEDIILDFSK-NSDMAVMILR 246
L++SS+ YG P+ +P+ E P NPYGK+K E++I D + + ++LR
Sbjct: 125 KNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLR 184
Query: 247 YFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306
YFN G+ G +GE P+ + A G L V G DY T DGT VRDY
Sbjct: 185 YFNPTGAHASGCIGEDPQGIPN---NLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 241
Query: 307 IDVNDLVDAHVKALERA-QPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRP 365
I V DL H+ AL + + IYN+GTG G SV + V+A +KA+ I RR
Sbjct: 242 IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARRE 301
Query: 366 GDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
GD A Y++P+ + EL WTA L E WRWQK + G+ +
Sbjct: 302 GDVAACYANPSLAQEELGWTAAL-GLDRMCEDLWRWQKQNPSGFGT 346
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 207 bits (526), Expect = 4e-64
Identities = 79/338 (23%), Positives = 135/338 (39%), Gaps = 22/338 (6%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
L+TG AG+IGS+ LLK +V +DN + G+ + ++ L E F +
Sbjct: 19 WLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGD 78
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ + D V+H AA+ V S DP+ L +L + V +
Sbjct: 79 IRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFT 138
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIG 252
Y+++ +TYG+ +P E+T P++PY K + E FS+ + + LRYFNV
Sbjct: 139 YAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVF- 197
Query: 253 SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDL 312
+G + +I G V Y DG RD+ + +
Sbjct: 198 -----------GRRQDPNGAYAAVIPKWTSSMIQGDDV----YINGDGETSRDFCYIENT 242
Query: 313 VDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSAN-----IKVIYEPRRPGD 367
V A++ A + +YN+ G S+ + A + + N + +Y R GD
Sbjct: 243 VQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGD 302
Query: 368 YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
+D +K L + KY ++ + +A W
Sbjct: 303 VRHSLADISKAAKLLGYAPKY-DVSAGVALAMPWYIMF 339
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 197 bits (501), Expect = 1e-60
Identities = 56/347 (16%), Positives = 120/347 (34%), Gaps = 49/347 (14%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V + G G +GS +L + ++ +L
Sbjct: 5 VFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL-----------------------NLL 41
Query: 133 DAKAVNKFFSENAFDAVMHFA-AVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
D++AV+ FF+ D V A V + + P + + ++ + ++ V+ L
Sbjct: 42 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKL 101
Query: 192 IYSSTCATYGEPEKMPITEE-----TPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILR 246
++ + Y + K P+ E T + PY AK + +++ +
Sbjct: 102 LFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVM 161
Query: 247 YFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306
N+ G + A ++ G GT +R++
Sbjct: 162 PTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWG-----------SGTPMREF 210
Query: 307 IDVNDLVDAHVKALERAQ-------PKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVI 359
+ V+D+ A + +E A + NVGTG +++E + K +V+
Sbjct: 211 LHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVV 270
Query: 360 YEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHR 406
++ +P D T++ +L W + +L+ L ++W ++
Sbjct: 271 FDASKPDGTPRKLLDVTRLH-QLGWYHEI-SLEAGLASTYQWFLENQ 315
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 193 bits (491), Expect = 2e-58
Identities = 123/379 (32%), Positives = 179/379 (47%), Gaps = 41/379 (10%)
Query: 73 VLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKV--------------LQEL 117
VLV GGAGYIGSH LL+D+ + V IVD+L + + V +
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKP 64
Query: 118 FPEPGRLQFIYADLGDAKAVNK-FFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNT 176
D+ + +N F DAV+H A VGES DPLKYY N
Sbjct: 65 PWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGI 124
Query: 177 LVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ-------APINPYGKAKKMAED 229
L +L++M H D +I+SS+ A +G P ++ +P +PYG++K +AE
Sbjct: 125 LRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAER 184
Query: 230 IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG-- 287
+I D ++ + + LRYFN G+ +G +GE + I G
Sbjct: 185 MIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTI 244
Query: 288 ---------LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-------KKVGIY 331
+ + GTDY T DGTCVRDY+ V DL AH+ AL+ + K ++
Sbjct: 245 HEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVF 304
Query: 332 NVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNL 391
N+GT +G SV+E +E +K T I V RR GD A + + K R L W KY L
Sbjct: 305 NLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTL 364
Query: 392 QESLEIAWRWQKSHRGGYA 410
+ +E +W++Q++H GYA
Sbjct: 365 EAIMETSWKFQRTHPNGYA 383
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 188 bits (478), Expect = 5e-57
Identities = 70/342 (20%), Positives = 123/342 (35%), Gaps = 29/342 (8%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNL-SRGNIGAVKVLQELFPE--PGRLQFIYA 129
L+TG G GS+ A LL+ Y V + S N G ++ L + G ++ Y
Sbjct: 4 ALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYG 63
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD 189
DL D+ + K +E + + A ++V S TL +L+++ G+
Sbjct: 64 DLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLI 123
Query: 190 ---TLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILR 246
+ST YG+ +++P E TP P +PYG AK A I+++F + ++ +
Sbjct: 124 NSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGI 183
Query: 247 YFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDY 306
FN PR R G + D +DY
Sbjct: 184 LFNHES----------PRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDY 233
Query: 307 IDVNDLVDAHVKA------------LERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSA 354
++ L+ + + + K + V CK+
Sbjct: 234 VEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKV 293
Query: 355 NIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLE 396
++ V + RP + + D TK + +LNW + E +
Sbjct: 294 HVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVA-FDELVR 334
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 187 bits (475), Expect = 2e-56
Identities = 78/356 (21%), Positives = 142/356 (39%), Gaps = 44/356 (12%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYA 129
+++VTGGAG+IGS+ + + VT++D L+ G L+ + + R++ +
Sbjct: 4 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYA--GNKANLEAILGD--RVELVVG 59
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD 189
D+ DA+ V+K ++ +H+AA ++ S DP + H T +LE+ ++ +
Sbjct: 60 DIADAELVDKLAAKADAI--VHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIR 117
Query: 190 TLIYSSTCATYGE------------PEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN 237
+ ST YG+ T ET P +PY K ++ I+ + ++
Sbjct: 118 F-HHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRS 176
Query: 238 SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST 297
+ I N G + I I+AG+K K
Sbjct: 177 FGVKATISNCSNNYG----------------PYQHIEKFIPRQITNILAGIKPK----LY 216
Query: 298 ADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSAN-I 356
+G VRD+I ND + + Y +G ++ KE +E +
Sbjct: 217 GEGKNVRDWIHTNDHSTGVWAI--LTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKD 274
Query: 357 KVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYASI 412
+ R G D +K+R EL WT ++T+ E LE +W ++ + +
Sbjct: 275 AYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQDWWKAE 330
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 185 bits (470), Expect = 7e-56
Identities = 72/351 (20%), Positives = 140/351 (39%), Gaps = 35/351 (9%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+TGG G++GS+ A L + + DNLSR GA L L G +F++ D+
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRK--GATDNLHWL-SSLGNFEFVHGDIR 59
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT-L 191
+ V + ++ D+ H A + S +P + TL +LE++ ++ + +
Sbjct: 60 NKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNI 119
Query: 192 IYSSTCATYGEPEKMP----------------ITEETPQAPINPYGKAKKMAEDIILDFS 235
IYSST YG+ E+ E T +PYG +K A+ +LD++
Sbjct: 120 IYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYA 179
Query: 236 KNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDY 295
+ + ++ R+ ++ G + + + GI + G
Sbjct: 180 RIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQK------AVEIKNGINKPFTISG--- 230
Query: 296 STADGTCVRDYIDVNDLVDAHVKALERAQPKK--VGIYNVGTGKGRSVKEFVEACKKATS 353
+G VRD + D++ + AL + S+ E + + +
Sbjct: 231 ---NGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCN 287
Query: 354 ANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKS 404
+++ P R D +D KI ++W+ K + ++ ++ + W S
Sbjct: 288 IDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKVS-AKDGVQKMYDWTSS 337
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 173 bits (440), Expect = 4e-51
Identities = 59/340 (17%), Positives = 116/340 (34%), Gaps = 37/340 (10%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+ +TG G+I SH A RL + + V D + + + +F DL
Sbjct: 18 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEH---------MTEDMFCDEFHLVDLR 68
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ K + + + Y+N + ++E+ +G+
Sbjct: 69 VMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTM-ISFNMIEAARINGIKRFF 127
Query: 193 YSSTCATYGEPEKMPIT-------EETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMIL 245
Y+S+ Y E +++ T + P P + +G K E++ ++K+ + I
Sbjct: 128 YASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIG 187
Query: 246 RYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRD 305
R+ N+ G + G P + G DG R
Sbjct: 188 RFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWG---------------DGLQTRS 232
Query: 306 YIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRP 365
+ +++ V+ ++ + N+G+ + S+ E E + + + P
Sbjct: 233 FTFIDECVEGVLRLTKS---DFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE 289
Query: 366 GDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
G SD I+ +L W L+E L I + W K
Sbjct: 290 GVRG-RNSDNNLIKEKLGWAPNM-RLKEGLRITYFWIKEQ 327
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 165 bits (418), Expect = 2e-48
Identities = 71/334 (21%), Positives = 127/334 (38%), Gaps = 28/334 (8%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTG G G++ A LL+ YRV + + L+EL E +Q+ D+
Sbjct: 3 ALVTGITGQDGAYLAKLLLEKGYRVHGLVARR--SSDTRWRLRELGIEG-DIQYEDGDMA 59
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
DA +V + + V + AA ++VG S P+ +LE++ + +T
Sbjct: 60 DACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRF 119
Query: 193 Y-SSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVI 251
Y +ST +G + E TP P +PYG AK I +++ ++ + FN
Sbjct: 120 YQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHE 179
Query: 252 GSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVND 311
+++ A G K + + RD+ D
Sbjct: 180 SPLRGIEF---------VTRKVTDAVARIKLG-------KQQELRLGNVDAKRDWGFAGD 223
Query: 312 LVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSAN----IKVIYEPRRPGD 367
V+A L++ K Y V TG +V++ + + + +K+ RP +
Sbjct: 224 YVEAMWLMLQQ---DKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAE 280
Query: 368 YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
+ +P K + L W + + L E + +
Sbjct: 281 VDVLLGNPAKAQRVLGWKPRTS-LDELIRMMVEA 313
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 158 bits (399), Expect = 2e-45
Identities = 67/353 (18%), Positives = 118/353 (33%), Gaps = 33/353 (9%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNL-SRGNIGAVKVLQEL--FPEPGRLQFIYA 129
L+TG G GS+ LL Y V + S N + + ++ YA
Sbjct: 4 ALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYA 63
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESM----AR 185
DL DA ++ ++ D V + AA ++V S P + + L +LE++
Sbjct: 64 DLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTID 123
Query: 186 HGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMIL 245
G Y + + P +E TP P +PY +K A +++ + +
Sbjct: 124 SGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNG 183
Query: 246 RYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRD 305
FN P R R GRI + G + RD
Sbjct: 184 ILFNHES--PRRGENFVTRKITRALGRIKVGLQTK---LFLG-----------NLQASRD 227
Query: 306 YIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSAN-IKVIYEPRR 364
+ D V+A L++ +P + + + +++ R
Sbjct: 228 WGFAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFR 287
Query: 365 PGDYAEVYSDPTKIRLELNWTAKYTNLQES--------LEIAWRWQKSHRGGY 409
P + + D +K + L W + ++ LE+A R + GY
Sbjct: 288 PAEVDNLQGDASKAKEVLGWKPQV-GFEKLVKMMVDEDLELAKREKVLVDAGY 339
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 118 bits (295), Expect = 3e-30
Identities = 72/371 (19%), Positives = 110/371 (29%), Gaps = 43/371 (11%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG---------- 122
V+V GG GY G AL L K +Y V IVDNL R L+ L P
Sbjct: 4 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 63
Query: 123 ----RLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN--- 175
++ D+ D + + + F D+V+HF S +D + + +N
Sbjct: 64 LTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIG 123
Query: 176 TLVVLESMARHGVDTLIYSSTCATYGEPEKMPI--------------TEETPQAPINPYG 221
TL VL ++ G + + + I T P+ + Y
Sbjct: 124 TLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYH 183
Query: 222 KAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPE-GRLGEAPRPELREHGRISGACFDA 280
+K I K + L V G + + E R L A
Sbjct: 184 LSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRF 243
Query: 281 ARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRS 340
G + R Y+D+ D V A+ + S
Sbjct: 244 CVQAAVGHPLTVYGKG----GQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFS 299
Query: 341 VKEFVEACKKATSA-----NIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESL 395
V E KA S + PR + + TK+ EL Y L
Sbjct: 300 VNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHY-LSDSLL 357
Query: 396 EIAWRWQKSHR 406
+ + +
Sbjct: 358 DSLLNFAVQFK 368
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 113 bits (282), Expect = 1e-28
Identities = 52/336 (15%), Positives = 101/336 (30%), Gaps = 14/336 (4%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V VTG G+ G +L L V + L E +Q D+
Sbjct: 11 VFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTV----PSLFETARVADGMQSEIGDIR 66
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D + + E + V H AA V S +P++ Y T+ +LE++ G +
Sbjct: 67 DQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAV 126
Query: 193 YSSTCATYGEPEKMPITEETPQ--APINPYGKAKKMAEDIILDFSKNSDMAVMILRYF-N 249
+ T + ++ + +PY +K AE + + + ++
Sbjct: 127 VNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTA 186
Query: 250 VIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309
V +G RI A + ++ V + +
Sbjct: 187 VATVRAGNVIGGGDWAL----DRIVPDILRAFEQSQ--PVIIRNPHAIRPWQHVLEPLSG 240
Query: 310 NDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 369
L+ + + + K + P +
Sbjct: 241 YLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAH 300
Query: 370 EVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
+ D +K +++L W ++ NL +LE W K+
Sbjct: 301 YLKLDCSKAKMQLGWHPRW-NLNTTLEYIVGWHKNW 335
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 102 bits (253), Expect = 8e-25
Identities = 48/345 (13%), Positives = 92/345 (26%), Gaps = 45/345 (13%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTG G++ SH +LL+ Y+V S + ++ + + D+
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTAR-SASKLANLQKRWDAKYPGRFETAVVEDML 72
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
A ++ A A + V S I + + A V +
Sbjct: 73 KQGAYDEVIKGAAGVAHIAS----VVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFV 128
Query: 193 YSSTCATYGEPEK--------------------MPITEETPQAPINPYGKAKKMAEDIIL 232
+S+ + P+ + E PQ + Y +K AE
Sbjct: 129 LTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAW 188
Query: 233 DFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292
F + + +G PE + G
Sbjct: 189 KFMDENKPHFTLNAVLPNY------TIGTIFDPETQSGSTSGWMMS----------LFNG 232
Query: 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKAT 352
+ Y+ D+ H+ P+ GT + +K
Sbjct: 233 EVSPALALMPPQYYVSAVDIGLLHLGC--LVLPQIERRRVYGTAGTFDWNTVLATFRKLY 290
Query: 353 -SANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLE 396
S + + + +I L + ++ES++
Sbjct: 291 PSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRS-IEESIK 334
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 100 bits (248), Expect = 3e-24
Identities = 59/357 (16%), Positives = 121/357 (33%), Gaps = 46/357 (12%)
Query: 73 VLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
VL+ G G+IG+H RLL++ Y V +D S + P F+ D+
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA-------ISRFLNHP-HFHFVEGDI 54
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
++ + D V+ A+A E T +PL+ + L ++ ++ +
Sbjct: 55 SIHSEWIEYHVKK-CDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 113
Query: 192 IYSSTCATYGEPEKMPITEETPQ------APINPYGKAKKMAEDIILDFSKNSDMAVMIL 245
S++ +K + + P Y +K++ + +I + + + +
Sbjct: 114 FPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLF 173
Query: 246 RYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRD 305
R FN +G S A ++ G G R
Sbjct: 174 RPFNWMGPR--------LDNLNAARIGSSRAITQLILNLVEGSP----IKLIDGGKQKRC 221
Query: 306 YIDVNDLVDAHVKALERAQPKKVG-IYNVGTGKGRS-VKEFVEACKKATSANIKVIYEP- 362
+ D+ D ++A + +E A + G I N+G + + ++E E + + + P
Sbjct: 222 FTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPP 281
Query: 363 --------------RRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
+ D L+W K ++QE+++ +
Sbjct: 282 FAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKI-DMQETIDETLDFFLRT 337
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 89.7 bits (220), Expect = 1e-20
Identities = 61/331 (18%), Positives = 104/331 (31%), Gaps = 29/331 (8%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
++VTGGAG+IGS+ L + +VDNL G + AD
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT-----------KFVNLVDLNIADY 50
Query: 132 GDAKAV-NKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
D + + + F V +T KY + L
Sbjct: 51 MDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIP 110
Query: 191 LIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNV 250
+Y+S+ ATYG I + P+N YG +K + ++ + ++ ++ RYFNV
Sbjct: 111 FLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNV 170
Query: 251 IGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310
G + A +G G RD++ V
Sbjct: 171 YGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSE---------------NFKRDFVYVG 215
Query: 311 DLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAE 370
D+ D ++ LE + ++V + A K + + A
Sbjct: 216 DVADVNLWFLENGVSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAF 275
Query: 371 VYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
+D T +R + E + W
Sbjct: 276 TQADLTNLRAAGYDKPF-KTVAEGVTEYMAW 305
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 81.0 bits (198), Expect = 1e-17
Identities = 40/329 (12%), Positives = 89/329 (27%), Gaps = 51/329 (15%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VL+ GG GYIG + + ++ + + F + G + I A L
Sbjct: 6 VLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLG-AKLIEASLD 64
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D + + + + L ++E++ G
Sbjct: 65 DHQRLVDALKQVDVVISALAG-------------GVLSHHILEQLKLVEAIKEAGNIKRF 111
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIG 252
S + + + G + + + + + + + G
Sbjct: 112 LPSEFGMDPDIMEHAL----------QPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAG 161
Query: 253 SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDL 312
A+ + + DG ++D +D+
Sbjct: 162 YFAGS----------------------LAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDV 199
Query: 313 VDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVY 372
+K+++ Q +Y S KE ++ ++ + N+ IY D+
Sbjct: 200 GTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS--SQDFLADM 257
Query: 373 SD---PTKIRLELNWTAKYTNLQESLEIA 398
D KI + + + EI
Sbjct: 258 KDKSYEEKIVRCHLYQIFFRGDLYNFEIG 286
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 77.2 bits (188), Expect = 1e-16
Identities = 53/332 (15%), Positives = 93/332 (28%), Gaps = 70/332 (21%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+TG G +G +L + V D D+
Sbjct: 4 ILITGANGQLGREIQKQLKGKNVEVIPTD------------------------VQDLDIT 39
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ AVNKFF+E + V++ AA V + Y + + G + +
Sbjct: 40 NVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQ 99
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIG 252
S+ K PITE P + YGK K E+ + + + R + G
Sbjct: 100 ISTDYVFD-GEAKEPITEFDEVNPQSAYGKTKLEGENFVKALNPKYYIV----RTAWLYG 154
Query: 253 SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDL 312
+ + ++ V DL
Sbjct: 155 DGNNFVKTMINLGKTHDELKV-------------------------VHDQVGTPTSTVDL 189
Query: 313 VDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEP--------RR 364
+K ++ K G ++ S +F + T ++KV +R
Sbjct: 190 ARVVLKVIDE---KNYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKR 246
Query: 365 PGDYAEVYSDPTKIRLELNWTAKYTNLQESLE 396
P + L +ESL+
Sbjct: 247 PKYSV---LRNYMLELTTGD--ITREWKESLK 273
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 76.8 bits (187), Expect = 1e-16
Identities = 36/288 (12%), Positives = 73/288 (25%), Gaps = 50/288 (17%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTG +G G +L + S + + G D+
Sbjct: 6 VLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ--------GKEKIGGEADVFIGDIT 57
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITS--NTLVVLESMARHGVDT 190
DA + + DA++ + + DP K + + +
Sbjct: 58 DAD--SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQ 115
Query: 191 LIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMI-LRYFN 249
+ + + P P+N G + + +R
Sbjct: 116 IDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGG 175
Query: 250 VIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309
++ G + L V D +
Sbjct: 176 LLDK----------------------------EGGVRELLVGKDDELLQTD---TKTVPR 204
Query: 310 NDLVDAHVKALERAQPKKVG-IYNVGT---GKGRSVKEFVEACKKATS 353
D+ + ++AL + +++G+ G K+F + TS
Sbjct: 205 ADVAEVCIQALLF--EEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTS 250
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 77.1 bits (188), Expect = 2e-16
Identities = 31/290 (10%), Positives = 74/290 (25%), Gaps = 51/290 (17%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+ G GYIG H A L + ++ S + + K + ++ +
Sbjct: 6 ILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSID 65
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D ++ + D V+ + + +++++ G
Sbjct: 66 DHASLVEAVKN--VDVVIST---------------VGSLQIESQVNIIKAIKEVGTVKRF 108
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIG 252
+ S + K+ + + + + + G
Sbjct: 109 FPSEFGNDVDNVHAV-----------EPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAG 157
Query: 253 SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDL 312
R+ I G ++ D+
Sbjct: 158 YFLRSLAQAGLTAPPRDKVVILGDGN-----------------------ARVVFVKEEDI 194
Query: 313 VDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEP 362
+KA++ + +Y S+ E V +K ++ Y P
Sbjct: 195 GTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 244
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 73.8 bits (179), Expect = 3e-15
Identities = 43/328 (13%), Positives = 86/328 (26%), Gaps = 47/328 (14%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+ G G +G R L + +D S+ D
Sbjct: 3 ILLFGKTGQVGWELQ-RSLAPVGNLIALDVHSK--------------------EFCGDFS 41
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ K V + + D +++ AA V ++ +P ++ + ++ G +
Sbjct: 42 NPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVH 101
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRY----F 248
YS+ G +P E +P+N YGK K E + D + Y
Sbjct: 102 YSTDYVFPG-TGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYAGKGN 160
Query: 249 NVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308
N + + + A ++V
Sbjct: 161 NFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRV--------ALNKPEVAGL 212
Query: 309 VNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDY 368
+ + + A G + V T A RPG+
Sbjct: 213 YHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPA--------SRPGNS 264
Query: 369 AEVYSDPTKIRLELNWTAKYTNLQESLE 396
+ K + + + ++
Sbjct: 265 R---LNTEKFQRNFDL--ILPQWELGVK 287
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.6 bits (148), Expect = 1e-11
Identities = 31/250 (12%), Positives = 65/250 (26%), Gaps = 64/250 (25%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+ + G G G + ++ Y VT++ R + AD+
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVLV---RDSSRLPSEGPRPAHVVVGDVLQAADVD 62
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
A DAV+ + L ++ ++ +M HGVD ++
Sbjct: 63 KTVA--------GQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDKVV 107
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIG 252
++ +P K+P + ++ + S + + + ++
Sbjct: 108 ACTSAFLLWDPTKVPP-------RLQAVTDDHIRMHKVL----RESGLKYVAVMPPHIGD 156
Query: 253 SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDL 312
G T DG I +DL
Sbjct: 157 QPLTGAY-----------------------------------TVTLDGRGPSRVISKHDL 181
Query: 313 VDAHVKALER 322
++ L
Sbjct: 182 GHFMLRCLTT 191
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 62.7 bits (151), Expect = 2e-11
Identities = 26/291 (8%), Positives = 67/291 (23%), Gaps = 51/291 (17%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+ V G G G+ + V G + +EL P + L
Sbjct: 6 IAVVGATGRQGASLIRVAAAVGHHVRA---QVHSLKGLIA--EELQAIPN-VTLFQGPLL 59
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ + D + A +A++ ++ + + + ++ R G
Sbjct: 60 NNVPL--------MDTLFEGAHLAFINTTS-----QAGDEIAIGKDLADAAKRAGTIQHY 106
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIG 252
S+ + P + +
Sbjct: 107 IYSSMPD-----------HSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAGIY---- 151
Query: 253 SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDL 312
+ + + + + + +D+
Sbjct: 152 -----------------NNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDV 194
Query: 313 VDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR 363
A ++ + K G T + S + A +A + + + P+
Sbjct: 195 GPALLQIFKDGPQKWNGHRIALTFETLSPVQVCAAFSRALNRRVTYVQVPK 245
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (118), Expect = 2e-07
Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 10/140 (7%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTG A IG A LL +V +VD + L E F EP + FI D+
Sbjct: 6 ALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF-EPQKTLFIQCDVA 64
Query: 133 DAKAVNKFFSE--NAFDAVMHFAAVAYVGESTLDPLKYYHNITSN---TLVVLESMARHG 187
D + + F + + F + A V N+ S T + L+ M++
Sbjct: 65 DQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQN 124
Query: 188 VDT----LIYSSTCATYGEP 203
+ SS
Sbjct: 125 GGEGGIIINMSSLAGLMPVA 144
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 49.6 bits (118), Expect = 2e-07
Identities = 12/71 (16%), Positives = 29/71 (40%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V++TG + IG A+ ++ VTI S +++ + ++ + AD+
Sbjct: 8 VIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVT 67
Query: 133 DAKAVNKFFSE 143
++ +
Sbjct: 68 TEDGQDQIINS 78
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (118), Expect = 2e-07
Identities = 31/167 (18%), Positives = 49/167 (29%), Gaps = 5/167 (2%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEP--GRLQFIYAD 130
+VTGGA IG LL+ V I A LQ P R+ I +
Sbjct: 15 AIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCN 74
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ + + VN V G L P +I+S + G
Sbjct: 75 IRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPA---EHISSKGWHAVLETNLTGTFY 131
Query: 191 LIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN 237
+ + + E + P P A + + +K+
Sbjct: 132 MCKAVYSSWMKEHGGSIVNIIVPTKAGFPLAVHSGAARAGVYNLTKS 178
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 49.7 bits (118), Expect = 2e-07
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 53 QSPTFSSPSPFSQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVK 112
P P S EG LVTG IG A+ L + +V + + A +
Sbjct: 4 AIPGPLGPQSASL--EGKV-ALVTGAGRGIGREMAMELGRRGCKVIVNY--ANSTESAEE 58
Query: 113 VLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143
V+ + + A++G + + + F E
Sbjct: 59 VVAAIKKNGSDAACVKANVGVVEDIVRMFEE 89
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 48.9 bits (116), Expect = 4e-07
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG-RLQFIYADL 131
++VTGG IG + V ++ R AV+V +++ E G + + D+
Sbjct: 12 IIVTGGNRGIGLAFTRAVAAAGANVAVIY---RSAADAVEVTEKVGKEFGVKTKAYQCDV 68
Query: 132 GDAKAVNKFFSE 143
+ V K +
Sbjct: 69 SNTDIVTKTIQQ 80
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 48.5 bits (115), Expect = 4e-07
Identities = 29/161 (18%), Positives = 47/161 (29%), Gaps = 12/161 (7%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG-RLQFIYADL 131
LVTGG+ +G A L + V + R A + Q+L + G D+
Sbjct: 8 ALVTGGSRGLGFGIAQGLAEAGCSVVVAS---RNLEEASEAAQKLTEKYGVETMAFRCDV 64
Query: 132 GDAKAVNKFFSE-----NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH 186
+ + V K D V++ A + + PL + + L + R
Sbjct: 65 SNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCRE 124
Query: 187 GVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMA 227
+T E P A K
Sbjct: 125 ---AFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGG 162
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 48.9 bits (116), Expect = 4e-07
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
++TGGAG IG A ++ +V I D + + P + F++ D+
Sbjct: 9 AIITGGAGGIGETTAKLFVRYGAKVVIADI----ADDHGQKVCNNIGSPDVISFVHCDVT 64
Query: 133 DAKAVNKFFSENA-----FDAVMHFAAVAYVGESTLD 164
+ V D + V ++
Sbjct: 65 KDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSIL 101
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 48.5 bits (115), Expect = 4e-07
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 9/121 (7%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
++TGG IG A + +++ +V I + + + P ++QF D
Sbjct: 9 AIITGGTLGIGLAIATKFVEEGAKVMITGR----HSDVGEKAAKSVGTPDQIQFFQHDSS 64
Query: 133 DAKAVNKFFSE-----NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG 187
D K F +++ A +A + + + L + R G
Sbjct: 65 DEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLG 124
Query: 188 V 188
+
Sbjct: 125 I 125
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Score = 48.3 bits (114), Expect = 5e-07
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTG IG ALRL+KD + V I D + A V E+ G + D+
Sbjct: 4 ALVTGAGQGIGKAIALRLVKDGFAVAIAD---YNDATAKAVASEINQAGGHAVAVKVDVS 60
Query: 133 DAKAVNKFFSE 143
D V +
Sbjct: 61 DRDQVFAAVEQ 71
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.0 bits (114), Expect = 6e-07
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
++TG + IG A+ ++ +VTI + + + + + AD+
Sbjct: 8 AIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVT 67
Query: 133 DAKAVNKFFSE-----NAFDAVMHFAAVAYVG 159
++ S D +++ A A
Sbjct: 68 TDAGQDEILSTTLGKFGKLDILVNNAGAAIPD 99
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 47.7 bits (113), Expect = 7e-07
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTGG+ IG L V R L + + +++ DL
Sbjct: 11 ALVTGGSRGIGYGIVEELASLGASVYTCS---RNQKELNDCLTQWRSKGFKVEASVCDLS 67
Query: 133 DAKAVNKFFSE 143
+ +
Sbjct: 68 SRSERQELMNT 78
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Score = 47.4 bits (112), Expect = 9e-07
Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTG IG A RL K+ RV + RG G L+EL D+
Sbjct: 5 ALVTGATSGIGLEIARRLGKEGLRVFVCA---RGEEGLRTTLKELREAGVEADGRTCDVR 61
Query: 133 DAKAVNKFFSE 143
+ +
Sbjct: 62 SVPEIEALVAA 72
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 47.5 bits (112), Expect = 1e-06
Identities = 27/155 (17%), Positives = 48/155 (30%), Gaps = 6/155 (3%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTG G IG ALRL ++ + ++D K + + + D+
Sbjct: 8 CLVTGAGGNIGLATALRLAEEGTAIALLD---MNREALEKAEASVREKGVEARSYVCDVT 64
Query: 133 DAKAVNKFFSE--NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+AV F + A + Y + + L + + A H +
Sbjct: 65 SEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKA 124
Query: 191 LIYSSTCATYGEPEKMP-ITEETPQAPINPYGKAK 224
+ YG + + YG +K
Sbjct: 125 VSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSK 159
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 47.7 bits (113), Expect = 1e-06
Identities = 14/71 (19%), Positives = 30/71 (42%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V++TG + IG AA+ K+ +VTI + + + ++ + AD+
Sbjct: 7 VIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVT 66
Query: 133 DAKAVNKFFSE 143
+A + +
Sbjct: 67 EASGQDDIINT 77
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.9 bits (111), Expect = 1e-06
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTG IG L +V V R N V + +E ++ + DLG
Sbjct: 8 ALVTGAGKGIGRDTVKALHASGAKVVAVT---RTNSDLVSLAKEC----PGIEPVCVDLG 60
Query: 133 DAKAVNKFFSE-NAFDAVMHFAAVAYVG 159
D A K D +++ AA+ +
Sbjct: 61 DWDATEKALGGIGPVDLLVNNAALVIMQ 88
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 47.4 bits (112), Expect = 1e-06
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 4/100 (4%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG-RLQFIYADL 131
+TGG +G L + I R +++ + G ++ I D+
Sbjct: 28 AFITGGGTGLGKGMTTLLSSLGAQCVIAS---RKMDVLKATAEQISSQTGNKVHAIQCDV 84
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHN 171
D V SE A + + + P +
Sbjct: 85 RDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSP 124
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (109), Expect = 1e-06
Identities = 28/259 (10%), Positives = 58/259 (22%), Gaps = 54/259 (20%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V + G +G G +L+ + R + + + E + +
Sbjct: 17 VFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYAS 76
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ + F A + L E G
Sbjct: 77 AFQGHDVGFCCLGTTRGKAGAE------------GFVRVDRDYVLKSAELAKAGGCKHFN 124
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIG 252
S+ ++ Y + K E + + R ++
Sbjct: 125 LLSSKGAD-------------KSSNFLYLQVKGEVEA---KVEELKFDRYSVFRPGVLLC 168
Query: 253 SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDL 312
E R GE R L + + V +
Sbjct: 169 DRQESRPGEW-----------------LVRKFFGSLPDSWASGHS---------VPVVTV 202
Query: 313 VDAHVKALERAQPKKVGIY 331
V A + + R + K++ +
Sbjct: 203 VRAMLNNVVRPRDKQMELL 221
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 46.9 bits (111), Expect = 1e-06
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTG IG A L K V + R V+ E+ D+
Sbjct: 13 ALVTGAGRGIGREIAKMLAKSVSHVICIS---RTQKSCDSVVDEIKSFGYESSGYAGDVS 69
Query: 133 DAKAVNKFF 141
+ +++
Sbjct: 70 KKEEISEVI 78
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Score = 47.0 bits (111), Expect = 1e-06
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTGG+ IG L RV R + L+ + ++ DL
Sbjct: 9 ALVTGGSKGIGYAIVEELAGLGARVYTCS---RNEKELDECLEIWREKGLNVEGSVCDLL 65
Query: 133 DAKAVNKFFSE 143
+K
Sbjct: 66 SRTERDKLMQT 76
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 46.6 bits (110), Expect = 2e-06
Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 8/98 (8%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
++TG IG A+ V + D A V+ E+ G+ D+
Sbjct: 14 AIITGAGAGIGKEIAITFATAGASVVVSD---INADAANHVVDEIQQLGGQAFACRCDIT 70
Query: 133 DAKAVNKFFSE-----NAFDAVMHFAAVAYVGESTLDP 165
+ ++ D +++ A +
Sbjct: 71 SEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPM 108
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Score = 46.7 bits (110), Expect = 2e-06
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VL+TGG +G A+RL + ++++VD S G + + E P+ + AD+
Sbjct: 7 VLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPD-AEVLTTVADVS 65
Query: 133 DAKAVNKFFSE 143
D V + +
Sbjct: 66 DEAQVEAYVTA 76
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 46.7 bits (110), Expect = 2e-06
Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 15/144 (10%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
L TG IG A+ L + V + S A +V+ EL + I AD+
Sbjct: 9 ALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSK--AAEEVVAELKKLGAQGVAIQADIS 66
Query: 133 DAKAVNKFFSE-----NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLV--------V 179
V F + D VM + + + + + + +
Sbjct: 67 KPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQG 126
Query: 180 LESMARHGVDTLIYSSTCATYGEP 203
L+ R G L S G P
Sbjct: 127 LKHCRRGGRIILTSSIAAVMTGIP 150
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.5 bits (110), Expect = 2e-06
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTG IG L RV V L L E ++ + DLG
Sbjct: 10 VLVTGAGKGIGRGTVQALHATGARVVAVSR-------TQADLDSLVRECPGIEPVCVDLG 62
Query: 133 DAKAVNKFFSE-NAFDAVMHFAAVAYVG 159
D +A + D +++ AAVA +
Sbjct: 63 DWEATERALGSVGPVDLLVNNAAVALLQ 90
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 46.5 bits (110), Expect = 2e-06
Identities = 22/150 (14%), Positives = 46/150 (30%), Gaps = 19/150 (12%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTGGA +G LL + +V D ++ EL R F+ D+
Sbjct: 9 ALVTGGASGVGLEVVKLLLGEGAKVAFSD---INEAAGQQLAAEL---GERSMFVRHDVS 62
Query: 133 DAKAVNKFFSE-----NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTL--------VV 179
+ + +++ A + G+ L+ + +
Sbjct: 63 SEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQG 122
Query: 180 LESMARHGVDTLIYSSTCATYGEPEKMPIT 209
+ +M G + +S + + +
Sbjct: 123 IAAMKETGGSIINMASVSSWLPIEQYAGYS 152
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Score = 46.3 bits (109), Expect = 2e-06
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V++TG + +G A+R + +V + A VL+E+ G + D+
Sbjct: 10 VVITGSSTGLGKSMAIRFATEKAKVVVNYR--SKEDEANSVLEEIKKVGGEAIAVKGDVT 67
Query: 133 DAKAVNKFFSE 143
V
Sbjct: 68 VESDVINLVQS 78
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 45.9 bits (108), Expect = 3e-06
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V+VTG + IG AL L K +V + +R A +V +++ G+ D+
Sbjct: 4 VVVTGASRGIGKAIALSLGKAGCKVLVNY--ARSAKAAEEVSKQIEAYGGQAITFGGDVS 61
Query: 133 DAKAVNKFF 141
V
Sbjct: 62 KEADVEAMM 70
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 45.9 bits (108), Expect = 3e-06
Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 11/130 (8%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+LVTG A IG A ++ + VD R + + L + AD+
Sbjct: 8 ILVTGAASGIGRAALDLFAREGASLVAVD---REERLLAEAVAAL---EAEAIAVVADVS 61
Query: 133 DAKAVNKFFSE-----NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG 187
D KAV F+E V HFA VA+ S PL+ + + L +AR
Sbjct: 62 DPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKA 121
Query: 188 VDTLIYSSTC 197
+ L +
Sbjct: 122 GEVLEEGGSL 131
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (109), Expect = 3e-06
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTG +G IG+ A L++ +V + GNI + + PG L DL
Sbjct: 13 ALVTGASGGIGAAVARALVQQGLKVVGCA-RTVGNIEELAAECKSAGYPGTLIPYRCDLS 71
Query: 133 DAKAVNKFFSE-----NAFDAVMHFAAVAYVG 159
+ + + FS + D ++ A +A
Sbjct: 72 NEEDILSMFSAIRSQHSGVDICINNAGLARPD 103
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 45.7 bits (108), Expect = 4e-06
Identities = 17/119 (14%), Positives = 46/119 (38%), Gaps = 11/119 (9%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V++TGGA +G+ AA + + RV + D + +EL ++ + D+
Sbjct: 8 VIITGGARGLGAEAARQAVAAGARVVLAD---VLDEEGAATAREL---GDAARYQHLDVT 61
Query: 133 DAKAVNKFFSE-----NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH 186
+ + + + D +++ A ++ + ++ + + L + +
Sbjct: 62 IEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKT 120
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 45.4 bits (107), Expect = 4e-06
Identities = 12/71 (16%), Positives = 18/71 (25%), Gaps = 3/71 (4%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGG IG + R + L + + ++ D
Sbjct: 11 VLVTGGTKGIGHAIVEEFAGFGAVIHTCA---RNEYELNECLSKWQKKGFQVTGSVCDAS 67
Query: 133 DAKAVNKFFSE 143
K
Sbjct: 68 LRPEREKLMQT 78
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.9 bits (106), Expect = 6e-06
Identities = 28/143 (19%), Positives = 43/143 (30%), Gaps = 21/143 (14%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V+VTGG IG+ + RV I D + L E FI D+
Sbjct: 9 VVVTGGGRGIGAGIVRAFVNSGARVVICDK-------DESGGRALEQELPGAVFILCDVT 61
Query: 133 DAKAVNKFFSE-----NAFDAVMHFAAVAYVGEST--LDPLKYYHNITSN-------TLV 178
V SE D V++ A + + + N T +
Sbjct: 62 QEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKL 121
Query: 179 VLESMARHGVDTLIYSSTCATYG 201
L + + + + SS G
Sbjct: 122 ALPYLRKSQGNVINISSLVGAIG 144
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 44.9 bits (106), Expect = 7e-06
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
++TGGA IG A R + + I D + A ++ L R+ + D+
Sbjct: 8 AVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNL---GRRVLTVKCDVS 62
Query: 133 DAKAVNKFFSE 143
V F +
Sbjct: 63 QPGDVEAFGKQ 73
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 45.0 bits (106), Expect = 7e-06
Identities = 19/149 (12%), Positives = 47/149 (31%), Gaps = 24/149 (16%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VL+TGGA +G R + + +V ++D + ++ + + I D+
Sbjct: 8 VLITGGASGLGRALVDRFVAEGAKVAVLD---KSAERLAELETDH---GDNVLGIVGDVR 61
Query: 133 DAKAVNKFFSE-----NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLV--------- 178
+ + S D ++ A + + +D + + + +
Sbjct: 62 SLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIH 121
Query: 179 ----VLESMARHGVDTLIYSSTCATYGEP 203
L ++ + + S Y
Sbjct: 122 AVKACLPALVASRGNVIFTISNAGFYPNG 150
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (102), Expect = 2e-05
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 8/92 (8%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VL+TG IG A K ++ + D G + + ++ D
Sbjct: 10 VLITGAGHGIGRLTAYEFAKLKSKLVLWD---INKHGLEETAAKCKGLGAKVHTFVVDCS 66
Query: 133 DAKAVNKFFSENA-----FDAVMHFAAVAYVG 159
+ + + + +++ A V Y
Sbjct: 67 NREDIYSSAKKVKAEIGDVSILVNNAGVVYTS 98
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 43.6 bits (102), Expect = 2e-05
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
L+TG A IG A +++ RV I D A E+ I D+
Sbjct: 8 ALITGSARGIGRAFAEAYVREGARVAIAD---INLEAARATAAEI---GPAACAIALDVT 61
Query: 133 DAKAVNKFFSE 143
D ++++ +E
Sbjct: 62 DQASIDRCVAE 72
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 43.3 bits (101), Expect = 2e-05
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG-RLQFIYADL 131
+VTG IG A L + + KV L + G ++ + ADL
Sbjct: 7 AVVTGSTSGIGLGIATALAAQGADIVLNGF--GDAAEIEKVRAGLAAQHGVKVLYDGADL 64
Query: 132 GDAKAVNKFFSE 143
+AV
Sbjct: 65 SKGEAVRGLVDN 76
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.1 bits (101), Expect = 2e-05
Identities = 15/105 (14%), Positives = 35/105 (33%), Gaps = 11/105 (10%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LV+GGA +G+ ++ + +V D + + EL ++++ D+
Sbjct: 9 ALVSGGARGMGASHVRAMVAEGAKVVFGD---ILDEEGKAMAAEL---ADAARYVHLDVT 62
Query: 133 DAKAVNKFFSE-----NAFDAVMHFAAVAYVGESTLDPLKYYHNI 172
+++ A + +G L + I
Sbjct: 63 QPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRI 107
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Score = 42.8 bits (100), Expect = 3e-05
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRV----TIVDNLSRGNIGAVKVLQELFPEPGRLQFIY 128
+L+TG IG AL + + ++ SR K+ E E I
Sbjct: 4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTIT 63
Query: 129 ADLGDAKAVNKFFSE 143
AD+ D V + +
Sbjct: 64 ADISDMADVRRLTTH 78
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 42.1 bits (99), Expect = 5e-05
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 14/92 (15%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGGA IG A ++ V + D +V + + F DL
Sbjct: 8 VLVTGGARGIGRAIAQAFAREGALVALCDL----RPEGKEVAEAI-----GGAFFQVDLE 58
Query: 133 DAKAVNKFFSE-----NAFDAVMHFAAVAYVG 159
D + +F E D +++ AA+A G
Sbjct: 59 DERERVRFVEEAAYALGRVDVLVNNAAIAAPG 90
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 42.0 bits (98), Expect = 6e-05
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 14/71 (19%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGG IG A RL D ++V + S P L + D+
Sbjct: 10 VLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS--------------GAPKGLFGVEVDVT 55
Query: 133 DAKAVNKFFSE 143
D+ AV++ F+
Sbjct: 56 DSDAVDRAFTA 66
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.7 bits (96), Expect = 7e-05
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIV 100
VL+ G G G H R+L + ++
Sbjct: 4 RVLLAGATGLTGEHLLDRILSEPTLAKVI 32
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Score = 41.2 bits (96), Expect = 1e-04
Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 21/142 (14%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VL+TG A IG K+ R+ D + + + + D+
Sbjct: 8 VLITGAAHGIGRATLELFAKEGARLVACD---IEEGPLREAAEAV-----GAHPVVMDVA 59
Query: 133 DAKAVNKFFSE-----NAFDAVMHFAAVAYVG---ESTLDPLKYYHNITSN-----TLVV 179
D +V + F+E D V+H+A + + L+ + +
Sbjct: 60 DPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAA 119
Query: 180 LESMARHGVDTLIYSSTCATYG 201
E+M +++ +++ G
Sbjct: 120 SEAMREKNPGSIVLTASRVYLG 141
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 41.0 bits (95), Expect = 1e-04
Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V+VTG IG +L+KD I+ +R ++ L+ + + R+ + +
Sbjct: 6 VVVTGANRGIGLGLVQQLVKDKNIRHIIA-TAR-DVEKATELKSI--KDSRVHVLPLTVT 61
Query: 133 DAKAVNKF-------FSENAFDAVMHFAAVAYVGESTLDP 165
K+++ F + +++ A V + +P
Sbjct: 62 CDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEP 101
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.7 bits (95), Expect = 2e-04
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVD------NLSRGNIGAVKVLQELFPEPGRLQF 126
VLVTG G +G AL + V + D + +G+ A KV++E+ G+
Sbjct: 10 VLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVA 69
Query: 127 IYADLGDAKAVNKFFSEN--AFDAVMHFAAVAYVG 159
Y + + + K + D V++ A +
Sbjct: 70 NYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDR 104
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Score = 40.0 bits (93), Expect = 2e-04
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 14/97 (14%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+VT + G +ALRL + + V D + K EL E +
Sbjct: 3 AIVTNVKHFGGMGSALRLSEAGHTVACHDE-------SFKQKDEL--EAFAETYPQLKPM 53
Query: 133 DAKAVNKFFSE--NAF---DAVMHFAAVAYVGESTLD 164
+ + +A+ D ++ A +
Sbjct: 54 SEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDK 90
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 3e-04
Identities = 32/146 (21%), Positives = 48/146 (32%), Gaps = 15/146 (10%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR---GNIGAVKVLQELFPEPGRLQFIYA 129
VL+TG + IG H A+RL D + V R + + L PG L+ +
Sbjct: 5 VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQL 64
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYY--------HNITSNTLV--- 178
D+ D+K+V V A +G N+ +
Sbjct: 65 DVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQA 124
Query: 179 VLESMARHGVDTLIY-SSTCATYGEP 203
L M R G ++ S G P
Sbjct: 125 FLPDMKRRGSGRVLVTGSVGGLMGLP 150
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 39.2 bits (91), Expect = 4e-04
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
+V+ G IG + L+K + + ++ + N A+ L+ + P+ Y
Sbjct: 7 NVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE-NPTALAELKAINPKVNITFHTYDVT 65
Query: 132 GDAKAVNKFFSE 143
K +
Sbjct: 66 VPVAESKKLLKK 77
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 4e-04
Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 18/181 (9%)
Query: 73 VLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
LVTGG IG L + V + R +Q+L E +F D+
Sbjct: 6 ALVTGGNKGIGLAIVRDLCRLFSGDVVLTA---RDVTRGQAAVQQLQAEGLSPRFHQLDI 62
Query: 132 GDAKAVNKFFS-----ENAFDAVMHFAAVAYVGES-TLDPLKYYHNITSN-------TLV 178
D +++ D +++ A +A+ T ++ + +N
Sbjct: 63 DDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTE 122
Query: 179 VLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNS 238
+L + G + SS + P ++ ++ + + + D K
Sbjct: 123 LLPLIKPQGRVVNV-SSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGV 181
Query: 239 D 239
Sbjct: 182 H 182
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.0 bits (90), Expect = 5e-04
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLV GG G +GS ++ V +D + A +++ + + A
Sbjct: 5 VLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTA--- 61
Query: 133 DAKAVNKFFSENAFDAVMHFA 153
V K + DA++ A
Sbjct: 62 ---EVGKLLGDQKVDAILCVA 79
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Score = 38.3 bits (88), Expect = 0.001
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE-PGRLQFIYADL 131
++TGGA IG A+RL + +RV + S G A +++ EL G DL
Sbjct: 4 AVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEG--AAQRLVAELNAARAGSAVLCKGDL 61
Query: 132 GDAKAVNKFFSENAFDAVM 150
+ ++ E+ D
Sbjct: 62 SLSSSLLDCC-EDIIDCSF 79
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.5 bits (86), Expect = 0.002
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEP--GRLQFIYAD 130
++TG + G A +L + +++ +R ++ +EL + ++ AD
Sbjct: 9 CVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAAD 68
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYV 158
LG V + S +
Sbjct: 69 LGTEAGVQRLLSAVRELPRPEGLQRLLL 96
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.5 bits (86), Expect = 0.002
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVD 101
V+V GG G +GS K+ Y V +D
Sbjct: 5 VIVYGGKGALGSAILEFFKKNGYTVLNID 33
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 36.4 bits (83), Expect = 0.003
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 14/88 (15%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
++++G A IG+ L +++ +D I +V+ +L GR Q I
Sbjct: 4 IVISGCATGIGAATRKVLEAAGHQIVGID------IRDAEVIADLSTAEGRKQAI----- 52
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGE 160
A + K D ++ A + +
Sbjct: 53 -ADVLAKCS--KGMDGLVLCAGLGPQTK 77
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 36.3 bits (83), Expect = 0.004
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 15/80 (18%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTGGA +G AAL L YRV ++D L E L ++ D+
Sbjct: 4 ALVTGGASGLGRAAALALKARGYRVVVLD---------------LRREGEDLIYVEGDVT 48
Query: 133 DAKAVNKFFSENAFDAVMHF 152
+ V + + +A +
Sbjct: 49 REEDVRRAVARAQEEAPLFA 68
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Score = 36.3 bits (83), Expect = 0.004
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 6/69 (8%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTG + IG A L +V GA + L + + ++
Sbjct: 7 ALVTGASRGIGRAIAETLAARGAKVIGTA---TSENGAQAISDYL---GANGKGLMLNVT 60
Query: 133 DAKAVNKFF 141
D ++
Sbjct: 61 DPASIESVL 69
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 413 | |||
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 100.0 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.96 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.96 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.95 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.95 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.95 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.95 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.95 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.95 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.95 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.95 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.95 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.95 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.95 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.95 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.95 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.95 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.95 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.95 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.95 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.95 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.95 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.95 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.95 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.95 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.95 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.95 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.94 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.94 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.94 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.94 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.94 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.94 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.94 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.94 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.94 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.94 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.94 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.94 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.93 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.93 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.93 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.93 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.93 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.93 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.92 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.92 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.92 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.92 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.92 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.92 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.91 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.91 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.91 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.9 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.9 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.9 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.9 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.89 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.89 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.89 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.88 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.87 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.87 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.87 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.86 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.85 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.83 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.83 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.82 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.79 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.77 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.74 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.73 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.45 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.31 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.29 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.24 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.19 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.16 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 98.05 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.03 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.01 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.97 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.96 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.96 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.91 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.86 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.85 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.83 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.76 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.74 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.74 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.72 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.71 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.68 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.67 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.57 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.57 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.56 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.55 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.52 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.51 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.49 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.49 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.45 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.42 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.4 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.37 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.37 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.37 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.29 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.29 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.29 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.21 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.09 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.09 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.06 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 97.03 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.02 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.0 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.95 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.92 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.9 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.9 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.83 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.79 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.78 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.73 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.7 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.67 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.67 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.66 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.66 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.66 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 96.63 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 96.63 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.45 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.4 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 96.39 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 96.39 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.38 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 96.36 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.35 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.32 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.27 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.27 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.18 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 96.15 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.1 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.1 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.05 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.04 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 96.01 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.96 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 95.95 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.9 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 95.87 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 95.85 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 95.83 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.76 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 95.75 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.73 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.67 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.64 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.48 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 95.45 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.43 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 95.42 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.32 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 95.29 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.25 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.21 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.18 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.17 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.15 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.09 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 95.08 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.08 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.05 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 95.0 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 94.94 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 94.89 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 94.8 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 94.66 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.63 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.63 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 94.6 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 94.56 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 94.55 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 94.54 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 94.52 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 94.47 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.41 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 94.4 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 94.39 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 94.34 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.32 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 94.32 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 94.3 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 94.26 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 94.23 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.18 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 94.05 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.02 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 93.97 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 93.96 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 93.92 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 93.75 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 93.73 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.68 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 93.67 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 93.37 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 93.25 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 93.23 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 93.02 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 92.84 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 92.84 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 92.82 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 92.66 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 92.55 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 92.41 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 92.4 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 92.32 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 92.19 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 91.71 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 91.5 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 91.35 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 91.34 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 91.24 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 91.09 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 91.06 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 91.04 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 91.03 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 90.98 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 90.76 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 90.72 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 90.42 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 90.28 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 89.94 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 89.9 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 89.63 | |
| d1jyea_ | 271 | Lac-repressor (lacR) core (C-terminal domain) {Esc | 88.95 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 88.92 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 88.5 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 88.33 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 88.3 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 88.21 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 88.02 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 87.62 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 87.48 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 87.39 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 86.99 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 86.88 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 86.53 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 86.49 | |
| d2csua3 | 163 | Acetate-CoA ligase alpha chain, AcdA, domains 2 an | 86.3 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 85.75 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 85.61 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 85.32 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 85.19 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 85.17 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 85.03 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 84.41 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 84.26 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 84.19 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 84.11 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 84.03 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 83.93 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 83.83 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 83.36 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 83.3 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 83.11 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 82.87 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 82.05 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 81.79 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 81.23 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 81.21 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 81.1 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 81.01 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 80.96 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 80.9 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 80.84 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 80.81 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 80.57 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 80.18 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 80.04 |
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-50 Score=385.12 Aligned_cols=334 Identities=38% Similarity=0.669 Sum_probs=285.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++|++.|+++|++|++++|..+............. ..++.++++|++|.+.+.++++..++|+||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vi 78 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH--TSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc--CCCCEEEEeecCCHHHHHHHHhccCCCEEE
Confidence 459999999999999999999999999999987666555444443332 257999999999999999999878999999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC-CCCCCChhHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET-PQAPINPYGKAKKMAED 229 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~-~~~~~~~Y~~sK~~~e~ 229 (413)
|+|+....+.+..++...+++|+.||.++|+++++.+++++|++||.++|+.....+..|+. +..|.++|+.+|.++|.
T Consensus 79 HlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~~~~~p~~~Y~~sK~~~e~ 158 (338)
T d1udca_ 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQ 158 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHHH
T ss_pred ECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEccccccccccccccCCCcchHHHHHhhhhH
Confidence 99998766666678889999999999999999999999999999999999877665555554 55789999999999999
Q ss_pred HHHHHHhh-CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeeccc
Q 015080 230 IILDFSKN-SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308 (413)
Q Consensus 230 ~~~~~~~~-~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~ 308 (413)
++.++..+ .+++++++||+.+|||++.+..+..+.... ..+++.++..+......+.++|......++.+.+||+|
T Consensus 159 ~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~ 235 (338)
T d1udca_ 159 ILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIP---NNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235 (338)
T ss_dssp HHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSC---CSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEE
T ss_pred HHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccH---HHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEE
Confidence 99876665 689999999999999998777665544322 25778888887776655999987777778899999999
Q ss_pred HHHHHHHHHHHHHhcCC-CCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCcccc
Q 015080 309 VNDLVDAHVKALERAQP-KKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAK 387 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 387 (413)
++|+++++..+...... ..+++||+++++++|+.|+++.+.+.+|.+.++.+.+..+.+.....+|++|+++.|||+|+
T Consensus 236 v~D~~~~~~~~~~~~~~~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgwkp~ 315 (338)
T d1udca_ 236 VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVT 315 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECCCTTCCSBCCBCCHHHHHHHCCCCC
T ss_pred EeehhhhccccccccccccCcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCCCCCCCCEeeECHHHHHHHHCCCcC
Confidence 99999998887775333 23479999999999999999999999999999888888777777788999999999999999
Q ss_pred cccHHHHHHHHHHHHHhccCCCc
Q 015080 388 YTNLQESLEIAWRWQKSHRGGYA 410 (413)
Q Consensus 388 ~~~~~e~l~~~~~~~~~~~~~~~ 410 (413)
+ +++|+|+++++|+++|++||-
T Consensus 316 ~-~l~egi~~ti~w~~~~~~~~~ 337 (338)
T d1udca_ 316 R-TLDEMAQDTWHWQSRHPQGYP 337 (338)
T ss_dssp C-CHHHHHHHHHHHHHHCTTCSC
T ss_pred C-CHHHHHHHHHHHHHhchhhCC
Confidence 9 999999999999999999984
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=1.6e-49 Score=375.82 Aligned_cols=314 Identities=25% Similarity=0.369 Sum_probs=270.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCE------EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYR------VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSEN 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 144 (413)
|+|||||||||||++|+++|+++|++ |+.++........ ..+..... ..++.++.+|+++........ .
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~--~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~--~ 75 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR--ANLAPVDA-DPRLRFVHGDIRDAGLLAREL--R 75 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG--GGGGGGTT-CTTEEEEECCTTCHHHHHHHT--T
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH--hHhhhhhc-CCCeEEEEeccccchhhhccc--c
Confidence 46999999999999999999999974 5555544332221 11222222 368999999999999888877 7
Q ss_pred CCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHH
Q 015080 145 AFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAK 224 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK 224 (413)
.+|+|+|+|+.........++...+++|+.++.++++++++.+++++|++||+++||.....+++|+.+..|.+.|+.||
T Consensus 76 ~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~~~~~p~~~Y~~sK 155 (322)
T d1r6da_ 76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASK 155 (322)
T ss_dssp TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTSCCCCCSHHHHHH
T ss_pred ccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCCCCCCCCCCCHHHHHH
Confidence 89999999998766666677888999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceee
Q 015080 225 KMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304 (413)
Q Consensus 225 ~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 304 (413)
.++|.+++.++++++++++++||+.||||+.... .+++.++..+..+.+ +.++| ++.+.+
T Consensus 156 ~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~-------------~~i~~~i~~~~~~~~-i~v~~------~g~~~r 215 (322)
T d1r6da_ 156 AGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPE-------------KLIPLFVTNLLDGGT-LPLYG------DGANVR 215 (322)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT-------------SHHHHHHHHHHTTCC-EEEET------TSCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcC-------------cHHHHHHHHHHcCCC-cEEec------CCCeEE
Confidence 9999999999999999999999999999975432 678888888888887 88888 899999
Q ss_pred ecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCcee-EecCCCCCCccccccCHHHHHHhcC
Q 015080 305 DYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKV-IYEPRRPGDYAEVYSDPTKIRLELN 383 (413)
Q Consensus 305 ~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~-~~~~~~~~~~~~~~~d~~k~~~~lG 383 (413)
+|+|++|+|+++..++++...+ ++||+++++++++.|+++.+.+.+|.+.+. ...+..+.......+|++|+++.||
T Consensus 216 ~~i~v~D~a~ai~~~~~~~~~~--~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 293 (322)
T d1r6da_ 216 EWVHTDDHCRGIALVLAGGRAG--EIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELG 293 (322)
T ss_dssp EEEEHHHHHHHHHHHHHHCCTT--CEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHC
T ss_pred ccEEHHHHHHHHHHHHhCCCCC--CeeEEeecccchhHHHHHHHHHHhCCCccceeecCCCCCCCceeeeCHHHHHHHHC
Confidence 9999999999999999987764 699999999999999999999999988764 3444455556667899999999999
Q ss_pred cccccccHHHHHHHHHHHHHhccCCCccC
Q 015080 384 WTAKYTNLQESLEIAWRWQKSHRGGYASI 412 (413)
Q Consensus 384 ~~p~~~~~~e~l~~~~~~~~~~~~~~~~~ 412 (413)
|+|++ +++|+|+++++||++|+++|+.+
T Consensus 294 ~~p~~-~~eegI~~~i~w~~~n~~~~~~~ 321 (322)
T d1r6da_ 294 YRPQV-SFADGLARTVRWYRENRGWWEPL 321 (322)
T ss_dssp CCCCS-CHHHHHHHHHHHHHHCHHHHGGG
T ss_pred CCCCC-CHHHHHHHHHHHHHHhHHhHhhC
Confidence 99998 89999999999999998877643
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-48 Score=373.35 Aligned_cols=334 Identities=37% Similarity=0.629 Sum_probs=271.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|.|||||||||||++|+++|+++|++|+++++..++............ ..+++++++|++|.++++.++...++|+||
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 79 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT--KHHIPFYEVDLCDRKGLEKVFKEYKIDSVI 79 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH--TSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhc--ccCCeEEEeecCCHHHHHHHHhccCCCEEE
Confidence 679999999999999999999999999999987666544433333332 257899999999999999999888999999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCC----CCCCCCCCCCCCCChhHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPE----KMPITEETPQAPINPYGKAKKM 226 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~----~~~~~e~~~~~~~~~Y~~sK~~ 226 (413)
|+|+...+....+.+...+.+|+.++.++++++++.+++++|++||.++||... ..+++|+.+..|.++|+.||.+
T Consensus 80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~ 159 (347)
T d1z45a2 80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYA 159 (347)
T ss_dssp ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHHHHHH
T ss_pred EccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccccCCCCCChhHhHHHH
Confidence 999987666666778889999999999999999999999999999999998653 3567888888999999999999
Q ss_pred HHHHHHHHHhh--CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceee
Q 015080 227 AEDIILDFSKN--SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304 (413)
Q Consensus 227 ~e~~~~~~~~~--~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 304 (413)
+|.+++.+.+. .+++++++||+.+||+.+.+.+|+.+... .+.+++.+...+.....++.++|......++...+
T Consensus 160 ~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~ 236 (347)
T d1z45a2 160 IENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGI---PNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIR 236 (347)
T ss_dssp HHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSS---CCSHHHHHHHHHTTSSSCCCCC------CCSSCEE
T ss_pred HHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCcccc---HHHHHHHHHHHHhcCCCCeEEeCCCccccCCceee
Confidence 99999998764 68999999999999998877666544322 22577777777766555488888666666778889
Q ss_pred ecccHHHHHHHHHHHHHhc-----CCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHH
Q 015080 305 DYIDVNDLVDAHVKALERA-----QPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIR 379 (413)
Q Consensus 305 ~~i~v~Dva~a~~~~~~~~-----~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~ 379 (413)
|++++.|++.+++.+++.. ....+++||+++++++|+.|+++.+.+.+|.+.++...+..+.+.....+|++|++
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~sk~~ 316 (347)
T d1z45a2 237 DYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAK 316 (347)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------CCCCCBCCHHHH
T ss_pred eeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCCCCCCCCEeeECHHHHH
Confidence 9999999999999988742 12234799999999999999999999999999988877776666677788999999
Q ss_pred HhcCcccccccHHHHHHHHHHHHHhccCCCc
Q 015080 380 LELNWTAKYTNLQESLEIAWRWQKSHRGGYA 410 (413)
Q Consensus 380 ~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~~ 410 (413)
++|||+|++ +++|+|+++++|+++|+++|+
T Consensus 317 ~~lGw~p~~-~lee~i~~ti~w~~~np~~~~ 346 (347)
T d1z45a2 317 RELKWQTEL-QVEDSCKDLWKWTTENPFGYQ 346 (347)
T ss_dssp HHTCCCCCC-CHHHHHHHHHHHHHHCTTCSC
T ss_pred HHHCCCCCC-CHHHHHHHHHHHHHhChhcCc
Confidence 999999998 999999999999999999997
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-49 Score=379.43 Aligned_cols=315 Identities=23% Similarity=0.279 Sum_probs=247.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCC--chhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN--IGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|||||||||||++|+++|+++|++|++++|..... ...............+++++++|++|.+++++++++..+|+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 7999999999999999999999999999999854321 11111112222224689999999999999999998878999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC---CEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV---DTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKK 225 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~---~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~ 225 (413)
|||+|+..+.+.+.+++...+++|+.||.+|++++++.++ .+|||+||+++||.....+++|+++..|.++|+.||.
T Consensus 82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~~P~~~Y~~sK~ 161 (357)
T d1db3a_ 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKL 161 (357)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHHHH
T ss_pred EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCCCCCCCChHHHHHH
Confidence 9999999887778889999999999999999999998754 4899999999999888889999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeee
Q 015080 226 MAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRD 305 (413)
Q Consensus 226 ~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 305 (413)
++|.+++.++++++++++++||++||||+..... ..+.+...+...+.+... ....| ++++.++
T Consensus 162 ~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~---------~~~~i~~~~~~~~~~~~~-~~~~g------~~~~~r~ 225 (357)
T d1db3a_ 162 YAYWITVNYRESYGMYACNGILFNHESPRRGETF---------VTRKITRAIANIAQGLES-CLYLG------NMDSLRD 225 (357)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTS---------HHHHHHHHHHHHHTTSCC-CEEES------CTTCEEC
T ss_pred HHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCC---------CchHHHHHHHHHHhCCCc-eEEEC------CCCeeec
Confidence 9999999999999999999999999999643210 001233333333333333 45566 8899999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCC----------------------
Q 015080 306 YIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR---------------------- 363 (413)
Q Consensus 306 ~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~---------------------- 363 (413)
|+|++|+|++++.++++.. +++||+++++++|+.|+++.+.+.+|...+....+.
T Consensus 226 ~~~v~D~~~a~~~~~~~~~---~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (357)
T d1db3a_ 226 WGHAKDYVKMQWMMLQQEQ---PEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDV 302 (357)
T ss_dssp CEEHHHHHHHHHHTTSSSS---CCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCE
T ss_pred ceeechHHHHHHHHHhCCC---CCeEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhcccccccccCce
Confidence 9999999999999988643 369999999999999999999999985544321000
Q ss_pred ---------CCCCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhc
Q 015080 364 ---------RPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 364 ---------~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
.+.+.....+|++|++++|||+|++ +++|+|+++++++++.
T Consensus 303 ~~~~~~~~~r~~~~~~~~~d~skakk~LGw~P~~-sl~egI~~~I~~~l~~ 352 (357)
T d1db3a_ 303 IIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEI-TLREMVSEMVANDLEA 352 (357)
T ss_dssp EEEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCS-CHHHHHHHHHHHHHHH
T ss_pred eEeeccccCCCccccccccCHHHHHHHHCCCcCC-CHHHHHHHHHHHHHHH
Confidence 1122234467999999999999999 9999999998766553
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-48 Score=367.51 Aligned_cols=303 Identities=27% Similarity=0.413 Sum_probs=255.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++|+++|+++|++|+++++.......... .... ...+++...|+.+. ++ .++|+||
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~---~~~~-~~~~d~~~~~~~~~-----~~--~~~d~Vi 70 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVE---HWIG-HENFELINHDVVEP-----LY--IEVDQIY 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTG---GGTT-CTTEEEEECCTTSC-----CC--CCCSEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHH---HhcC-CCceEEEehHHHHH-----HH--cCCCEEE
Confidence 899999999999999999999999999999875443322221 1111 24566666666443 33 5799999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCC-----CCCCCCChhHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEE-----TPQAPINPYGKAKK 225 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~-----~~~~~~~~Y~~sK~ 225 (413)
|+|+....+.+..++...+++|+.|+.++++++++.++ ++||+||+++||.....+++|+ .|..|.++|+.||.
T Consensus 71 hlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~-k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK~ 149 (312)
T d2b69a1 71 HLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKR 149 (312)
T ss_dssp ECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHH
T ss_pred ECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHHHH
Confidence 99998766666678889999999999999999999886 8999999999997765555554 46678899999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeee
Q 015080 226 MAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRD 305 (413)
Q Consensus 226 ~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 305 (413)
++|.+++.+++++|++++++||+.||||+..... +.+++.++..+..+++ +.++| ++.+.++
T Consensus 150 ~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~-----------~~~i~~~i~~~~~g~~-i~i~~------~g~~~r~ 211 (312)
T d2b69a1 150 VAETMCYAYMKQEGVEVRVARIFNTFGPRMHMND-----------GRVVSNFILQALQGEP-LTVYG------SGSQTRA 211 (312)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTC-----------CCHHHHHHHHHHHTCC-EEEES------SSCCEEE
T ss_pred HHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCC-----------ccHHHHHHHHHHcCCC-eEEeC------CCCeeEc
Confidence 9999999999999999999999999999754321 2678888888888877 88888 8999999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCcc
Q 015080 306 YIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWT 385 (413)
Q Consensus 306 ~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 385 (413)
|+|++|+|++++.+++.... ++||++++++.++.++++.+.+.+|.+.++.+.+....+.....+|++|++++|||+
T Consensus 212 ~i~v~D~~~~~~~~~~~~~~---~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~ 288 (312)
T d2b69a1 212 FQYVSDLVNGLVALMNSNVS---SPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWE 288 (312)
T ss_dssp CEEHHHHHHHHHHHHTSSCC---SCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCCC
T ss_pred cEEHHHHHHHHHHHHhhccC---CceEecCCcccchhhHHHHHHHHhCCCCceEECCCCCCCCCeeeECHHHHHHHHCCC
Confidence 99999999999999876543 589999999999999999999999999998888877777778889999999999999
Q ss_pred cccccHHHHHHHHHHHHHhccC
Q 015080 386 AKYTNLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 386 p~~~~~~e~l~~~~~~~~~~~~ 407 (413)
|++ +++++|+++++||+++.+
T Consensus 289 p~~-~l~~~I~~~i~w~~~~~~ 309 (312)
T d2b69a1 289 PVV-PLEEGLNKAIHYFRKELE 309 (312)
T ss_dssp CCS-CHHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHHHHh
Confidence 999 999999999999988754
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=7e-49 Score=377.09 Aligned_cols=314 Identities=22% Similarity=0.325 Sum_probs=261.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEE-EEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
|+|||||||||||++|+++|+++|++| +++++..... ..+.+..+.. ..+++++++|++|.+.+.++++..++|+|
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~--~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~~~~d~V 77 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAG--NLESLSDISE-SNRYNFEHADICDSAEITRIFEQYQPDAV 77 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTC--CGGGGTTTTT-CTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccc--cHHHHHhhhh-cCCcEEEEccCCCHHHHHHHHHhCCCCEE
Confidence 469999999999999999999999975 5555433322 1223333333 36899999999999999999987789999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC---------CCEEEEeccceecCCCCCCC----------CCC
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG---------VDTLIYSSTCATYGEPEKMP----------ITE 210 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---------~~~iV~~SS~~~~~~~~~~~----------~~e 210 (413)
||+|+...++.+..++...+++|+.|+.+++++|++.+ +++||++||+++||.....+ ..|
T Consensus 78 ihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e 157 (361)
T d1kewa_ 78 MHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTE 157 (361)
T ss_dssp EECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCT
T ss_pred EECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCccc
Confidence 99999876666667888999999999999999998753 45999999999998654322 235
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
..+..|.+.|+.||.++|.++..+++++++++++|||+.||||+...+ .+++.++..+.++++ +.+
T Consensus 158 ~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~-------------~~i~~~i~~~~~g~~-~~v 223 (361)
T d1kewa_ 158 TTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE-------------KLIPLVILNALEGKP-LPI 223 (361)
T ss_dssp TSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-------------SHHHHHHHHHHHTCC-EEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcC-------------cHHHHHHHHHHcCCC-cEE
Confidence 556778999999999999999999999999999999999999975322 678888888888887 888
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcC--------CCceeEecC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATS--------ANIKVIYEP 362 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g--------~~~~~~~~~ 362 (413)
+| ++++.++|+|++|+|+++..++++...+ ++|||+++++.++.|+++.+.+.++ .+..+...+
T Consensus 224 ~g------~g~~~r~~i~v~D~a~ai~~~~~~~~~~--~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 295 (361)
T d1kewa_ 224 YG------KGDQIRDWLYVEDHARALHMVVTEGKAG--ETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVA 295 (361)
T ss_dssp ET------TSCCEEEEEEHHHHHHHHHHHHHHCCTT--CEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEEC
T ss_pred eC------CCCeEEeCEEHHHHHHHHHHHHhcCCCC--CeEEECCCCCcchHHHHhHhhhhcccccccccCcccceeecC
Confidence 88 8999999999999999999999987664 6999999999999999999998764 333455555
Q ss_pred CCCCCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccCCCc
Q 015080 363 RRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYA 410 (413)
Q Consensus 363 ~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~~ 410 (413)
..+.......+|++|++++|||+|++ +++|+|+++++||++++++.+
T Consensus 296 ~~~~~~~~~~~d~~k~~~~lgw~P~~-~l~e~i~~ti~w~~~n~~~~~ 342 (361)
T d1kewa_ 296 DRPGHDRRYAIDAGKISRELGWKPLE-TFESGIRKTVEWYLANTQWVN 342 (361)
T ss_dssp CCTTCCCBCCBCCHHHHHHHCCCCSC-CHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCCCCceeeeCHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHhHHHHH
Confidence 56666677889999999999999998 999999999999999866554
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-47 Score=364.68 Aligned_cols=334 Identities=39% Similarity=0.651 Sum_probs=280.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCC------chhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN------IGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSEN 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 144 (413)
|+|||||||||||++|+++|+++|++|+++++..+.. ....+.++... ..++.++.+|++|.+.+.+++...
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~l~~~~~~~ 80 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT--GRSVEFEEMDILDQGALQRLFKKY 80 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH--TCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhc--CCCcEEEEeecccccccccccccc
Confidence 7899999999999999999999999999998643322 22223333322 367999999999999999999888
Q ss_pred CCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCC-CCCCCCChhHHH
Q 015080 145 AFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEE-TPQAPINPYGKA 223 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~-~~~~~~~~Y~~s 223 (413)
++|+++|+||......+..++...+++|+.++.++++++++.+++++|++||+.+|+........++ ....+.++|+.+
T Consensus 81 ~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~Y~~~ 160 (346)
T d1ek6a_ 81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKS 160 (346)
T ss_dssp CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHHH
T ss_pred ccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccccccccccccccCChHHHH
Confidence 8999999999877666677888999999999999999999999999999999999987754443333 345678899999
Q ss_pred HHHHHHHHHHHHhh-CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCce
Q 015080 224 KKMAEDIILDFSKN-SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTC 302 (413)
Q Consensus 224 K~~~e~~~~~~~~~-~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 302 (413)
|..+|..+..+++. .+++.+++||+.+|||.....+++...... ..+++.+...+......+.++|......++.+
T Consensus 161 k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~ 237 (346)
T d1ek6a_ 161 KFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIP---NNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237 (346)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSC---CSHHHHHHHHHHTSSSCEEEECSCSSSSSSSC
T ss_pred HHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccH---HHHHHHHHHHHHcCCCcEEEcCCcccCCCCCe
Confidence 99999999988765 689999999999999987766665544322 25677777766665555888888888888999
Q ss_pred eeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHh
Q 015080 303 VRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLE 381 (413)
Q Consensus 303 ~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 381 (413)
.+||+|++|+|.++..++.... ...+++||+++++.+++.|+++.+.+.+|.+.++.+.+.++.+.....+|++|++++
T Consensus 238 ~Rdfi~v~D~a~~~~~~~~~~~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~~~~e~~~~~~d~~k~~~~ 317 (346)
T d1ek6a_ 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEE 317 (346)
T ss_dssp EECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHHT
T ss_pred eEeEEEEEeccchhhhhccccccccCceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCCCCCCCCEeeECHHHHHHH
Confidence 9999999999999998876533 234579999999999999999999999999999988888888878888999999999
Q ss_pred cCcccccccHHHHHHHHHHHHHhccCCCc
Q 015080 382 LNWTAKYTNLQESLEIAWRWQKSHRGGYA 410 (413)
Q Consensus 382 lG~~p~~~~~~e~l~~~~~~~~~~~~~~~ 410 (413)
|||+|++ +++|+|+++++||++|+++|.
T Consensus 318 lgw~p~~-slee~I~~~i~w~~~n~~~~~ 345 (346)
T d1ek6a_ 318 LGWTAAL-GLDRMCEDLWRWQKQNPSGFG 345 (346)
T ss_dssp TCCCCCC-CHHHHHHHHHHHHHHCTTCSC
T ss_pred HCCCcCC-CHHHHHHHHHHHHHhCHhhcC
Confidence 9999999 899999999999999999985
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=7.4e-48 Score=367.26 Aligned_cols=317 Identities=25% Similarity=0.360 Sum_probs=269.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCC--CCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE--PGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|||||||||||++|+++|.++|++|++++|..+........+..+... ...+.++.+|+.|...+.... ..+++
T Consensus 17 k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~--~~~~~ 94 (341)
T d1sb8a_ 17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNAC--AGVDY 94 (341)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHH--TTCSE
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccccccc--ccccc
Confidence 89999999999999999999999999999998666555444333333221 257899999999999988877 78899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
++|+++......+..++...+++|+.|+.+++++|.+.+++++|++||+++||.....+++|+++..|.+.|+.+|.++|
T Consensus 95 v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E 174 (341)
T d1sb8a_ 95 VLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNE 174 (341)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHHHH
T ss_pred cccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccCCCCCCCCCcchHHHHHHH
Confidence 99999877666667788889999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeeccc
Q 015080 229 DIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308 (413)
Q Consensus 229 ~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~ 308 (413)
.+++.+.++++++++++||+.||||+..+... .+.+++.++..+..+++ +.++| ++.+.++|+|
T Consensus 175 ~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~---------~~~~i~~~~~~~~~g~~-i~~~g------~g~~~r~~i~ 238 (341)
T d1sb8a_ 175 LYADVFSRCYGFSTIGLRYFNVFGRRQDPNGA---------YAAVIPKWTSSMIQGDD-VYING------DGETSRDFCY 238 (341)
T ss_dssp HHHHHHHHHHCCCCEEEEECCEECTTCCCCST---------TCCHHHHHHHHHHHTCC-CEEES------SSCCEECCEE
T ss_pred HHHHHHHHHhCCCeEEEEeceeeccCcCCCCc---------hhhhHHHHHHHHHcCCc-eEEcC------CCCEEEEEEE
Confidence 99999999899999999999999997543311 12577777888888877 88888 8999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCc-----eeEecCCCCCCccccccCHHHHHHhcC
Q 015080 309 VNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANI-----KVIYEPRRPGDYAEVYSDPTKIRLELN 383 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~-----~~~~~~~~~~~~~~~~~d~~k~~~~lG 383 (413)
++|+|.++..++.......+++||+++++..|+.|+++.|.+.++.+. .....+....+......|++|+++.||
T Consensus 239 v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG 318 (341)
T d1sb8a_ 239 IENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLG 318 (341)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTC
T ss_pred EeccchhhhhhhhccccccceeeeecccccchHHHHHHHHHHHhccccccccccccccCCCCCCcCeeeeCHHHHHHHHC
Confidence 999999999999865444457999999999999999999999987442 233334445555667789999999999
Q ss_pred cccccccHHHHHHHHHHHHHhcc
Q 015080 384 WTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 384 ~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
|+|++ +++++|+++++||+++.
T Consensus 319 w~p~~-sl~~gi~~ti~wy~~~~ 340 (341)
T d1sb8a_ 319 YAPKY-DVSAGVALAMPWYIMFL 340 (341)
T ss_dssp CCCCC-CHHHHHHHHHHHHHHHT
T ss_pred CCcCC-CHHHHHHHHHHHHHHhc
Confidence 99999 89999999999999863
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=3.6e-47 Score=363.25 Aligned_cols=312 Identities=24% Similarity=0.352 Sum_probs=257.1
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEE--EEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVT--IVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
||+|||||||||||++|+++|+++|++|. ++++...... ...+.... ..+++++.+|++|.+.+.+++ ...|
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~--~~~~~~~~--~~~i~~~~~Di~d~~~~~~~~--~~~~ 75 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN--KANLEAIL--GDRVELVVGDIADAELVDKLA--AKAD 75 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC--GGGTGGGC--SSSEEEEECCTTCHHHHHHHH--TTCS
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCcccc--HHHHHHhh--cCCeEEEEccCCCHHHHHHHH--hhhh
Confidence 69999999999999999999999998654 4443322221 12222221 368999999999999999999 6789
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCC------------CCCCCCCCCCCC
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEP------------EKMPITEETPQA 215 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~------------~~~~~~e~~~~~ 215 (413)
.|+|+|+......+..++...+++|+.|+.++++++.+.+. ++|++||+.+||.. ....++|..+..
T Consensus 76 ~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~-k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~ 154 (346)
T d1oc2a_ 76 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYN 154 (346)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCC
T ss_pred hhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccccc-cccccccceEecccCccccccccccCcccccccCCCCC
Confidence 99999998766656677888999999999999999999875 89999999999742 123456677788
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccc
Q 015080 216 PINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDY 295 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 295 (413)
|.+.|+.+|.++|.+++.++++++++++++||+.||||..... ..+...+..+..+.+ +.++|
T Consensus 155 p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~-------------~~~~~~i~~~~~~~~-~~i~~--- 217 (346)
T d1oc2a_ 155 PSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE-------------KFIPRQITNILAGIK-PKLYG--- 217 (346)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT-------------SHHHHHHHHHHHTCC-CEEET---
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCcc-------------chhHHHHHHHHcCCc-eeEeC---
Confidence 8999999999999999999998999999999999999874322 455555666666665 77777
Q ss_pred cCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCc-eeEecCCCCCCccccccC
Q 015080 296 STADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANI-KVIYEPRRPGDYAEVYSD 374 (413)
Q Consensus 296 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~-~~~~~~~~~~~~~~~~~d 374 (413)
++.+.++|+|++|+|++++.++.+...+ +.||+++++..++.++++.+.+.++.+. .+...+..+.......+|
T Consensus 218 ---~g~~~r~~i~v~D~a~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d 292 (346)
T d1oc2a_ 218 ---EGKNVRDWIHTNDHSTGVWAILTKGRMG--ETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAID 292 (346)
T ss_dssp ---TSCCEEECEEHHHHHHHHHHHHHHCCTT--CEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBC
T ss_pred ---CCCccccccchhhHHHHHHHHHhhcccC--ccccccccccccchHHHHHHHHHhCCCCcceEECCCCCCCCceeeeC
Confidence 8999999999999999999999987765 6999999999999999999999999754 355555555666667789
Q ss_pred HHHHHHhcCcccccccHHHHHHHHHHHHHhccCCCc
Q 015080 375 PTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYA 410 (413)
Q Consensus 375 ~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~~ 410 (413)
++|++++|||+|++++|+|+|+++++||++|.++|+
T Consensus 293 ~~k~~~~LGw~P~~t~l~e~i~~ti~w~~~n~~~~~ 328 (346)
T d1oc2a_ 293 ASKLRDELGWTPQFTDFSEGLEETIQWYTDNQDWWK 328 (346)
T ss_dssp CHHHHHHHCCCCSCCCHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHCCCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999975799999999999999988764
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=8.4e-45 Score=351.51 Aligned_cols=334 Identities=37% Similarity=0.585 Sum_probs=269.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHH-CCCEEEEEecCCCCCch---------hhhhhhhhcC-----CCCceEEEEccCCCHH
Q 015080 71 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNIG---------AVKVLQELFP-----EPGRLQFIYADLGDAK 135 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~-~G~~V~~~~r~~~~~~~---------~~~~~~~~~~-----~~~~~~~~~~Dl~d~~ 135 (413)
|+|||||||||||++|+++|++ .|++|+++|+..+.... ....+..... ....+.++.+|++|.+
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~ 82 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNED 82 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCHH
Confidence 6899999999999999999986 69999999864432211 1111211111 1246889999999999
Q ss_pred HHHHHhhc-CCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCC-------CCC
Q 015080 136 AVNKFFSE-NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPE-------KMP 207 (413)
Q Consensus 136 ~~~~~~~~-~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~-------~~~ 207 (413)
.++++++. .++|+|||+|+..........+...+++|+.++.+++.++++.++++++++||..+|+... ..+
T Consensus 83 ~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 162 (383)
T d1gy8a_ 83 FLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEP 162 (383)
T ss_dssp HHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCCC
T ss_pred HhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccccccccccccccccccccccccc
Confidence 99999876 4679999999987666566677888999999999999999999999999999999987543 235
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHh-----
Q 015080 208 ITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAAR----- 282 (413)
Q Consensus 208 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 282 (413)
+.|+.+..|.++|+.+|.++|.+++.+.+.+|++++++||+.+|||+........... ...+++.++..+.
T Consensus 163 ~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~----~~~~ip~ii~~~~~~~~~ 238 (383)
T d1gy8a_ 163 IDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQG----STHLIPIILGRVMSDIAP 238 (383)
T ss_dssp BCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTT----CCSHHHHHHHHHHHHHSC
T ss_pred cccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccc----cchhHHHHHHHHHhhccc
Confidence 6777888899999999999999999999989999999999999999865433211111 1144555544332
Q ss_pred -----------ccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-------CCccEEEecCCCcccHHHH
Q 015080 283 -----------GIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-------KKVGIYNVGTGKGRSVKEF 344 (413)
Q Consensus 283 -----------~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-------~~~~~yni~~~~~~s~~e~ 344 (413)
.+.+ +.++|.....++|.+.++|+|++|+|++++.+++.... ..+++||+++++++++.|+
T Consensus 239 ~~~~~~~~~~~~~~~-~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el 317 (383)
T d1gy8a_ 239 DQRLTIHEDASTDKR-MPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREV 317 (383)
T ss_dssp C-----------CCC-EEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHH
T ss_pred cccchhhhhhhcCCc-eEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCceeHHHH
Confidence 1223 77888777788899999999999999999999885211 1246999999999999999
Q ss_pred HHHHHHHcCCCceeEecCCCCCCccccccCHHHHHHhcCcccccccHHHHHHHH-HHHHHhccCCCc
Q 015080 345 VEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIA-WRWQKSHRGGYA 410 (413)
Q Consensus 345 ~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~-~~~~~~~~~~~~ 410 (413)
++.+.+.+|.+.++...+.++.+......|++|++++|||+|++ +++|+|+++ +.|++.++++|+
T Consensus 318 ~~~i~~~~~~~~~~~~~~~~~~d~~~~~~d~~k~~k~LGw~P~~-~l~e~i~~t~~~w~~~~~~~~~ 383 (383)
T d1gy8a_ 318 IEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKY-DTLEAIMETSWKFQRTHPNGYA 383 (383)
T ss_dssp HHHHHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSC-CSHHHHHHHHHHHHHTCTTTTC
T ss_pred HHHHHHHhCCCCceEECCCCCCCcCEeeeCHHHHHHHHCCccCC-CHHHHHHHHHHHHHHhCcccCC
Confidence 99999999999998888877777778888999999999999999 899999887 599999999995
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=7.3e-45 Score=343.33 Aligned_cols=312 Identities=22% Similarity=0.245 Sum_probs=256.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++|+++|+++|++|++++|...... ...+..+... .++.++.+|++|.+.+.+.+....+++++
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~--~~~l~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~ 77 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDT--RWRLRELGIE-GDIQYEDGDMADACSVQRAVIKAQPQEVY 77 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCC--CHHHHHTTCG-GGEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCccc--HHHHHHhccc-CCcEEEEccccChHHhhhhhccccccccc
Confidence 68999999999999999999999999999998644322 2333333222 57999999999999999999888899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC-CEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV-DTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAED 229 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 229 (413)
|+|+.........++...++.|+.|+.++++++++.+. .++++.||..+|+.......+|+.+..|.++|+.+|.++|.
T Consensus 78 ~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~ 157 (321)
T d1rpna_ 78 NLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHW 157 (321)
T ss_dssp ECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHH
T ss_pred cccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCCCCccccChhHHHHHHHHH
Confidence 99987766666677888999999999999999999874 48888899999988888888999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccH
Q 015080 230 IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 230 ~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
++..++++++++++++||+.+|||...... ..+.+...+.+...+..+ ....| ++++.++|+|+
T Consensus 158 ~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~---------~~~~i~~~~~~~~~~~~~-~i~~g------~g~~~r~~i~v 221 (321)
T d1rpna_ 158 ITVNYRESFGLHASSGILFNHESPLRGIEF---------VTRKVTDAVARIKLGKQQ-ELRLG------NVDAKRDWGFA 221 (321)
T ss_dssp HHHHHHHHHCCCEEEEEECCEECTTSCTTS---------HHHHHHHHHHHHHTTSCS-CEEES------CTTCEEECEEH
T ss_pred HHHHHHhhcCCcEEEEEEecccCCCccccc---------cHHHHHHHHHHHHhCCCC-cEEEC------CCCeEEccEEe
Confidence 999999999999999999999999632210 011233444444444444 44556 89999999999
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCcee--EecC--CCCCCccccccCHHHHHHhcCcc
Q 015080 310 NDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKV--IYEP--RRPGDYAEVYSDPTKIRLELNWT 385 (413)
Q Consensus 310 ~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~--~~~~--~~~~~~~~~~~d~~k~~~~lG~~ 385 (413)
+|+|++++.+++++.. +.||+++++..++.++++.+.+.+|.+.+. ...+ .++.+......|++|++++|||+
T Consensus 222 ~D~~~~~~~~~~~~~~---~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~ 298 (321)
T d1rpna_ 222 GDYVEAMWLMLQQDKA---DDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWK 298 (321)
T ss_dssp HHHHHHHHHHHHSSSC---CCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCc---CCceecccccceehhhhHHHHHHhCCCccceeecCCCCCCCCccCCccCCHHHHHHHHCCC
Confidence 9999999999997654 489999999999999999999999977542 2222 23344556778999999999999
Q ss_pred cccccHHHHHHHHHHHHHhc
Q 015080 386 AKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 386 p~~~~~~e~l~~~~~~~~~~ 405 (413)
|++ +++|+|++|++|+++.
T Consensus 299 P~~-~l~e~i~~tv~~~l~~ 317 (321)
T d1rpna_ 299 PRT-SLDELIRMMVEADLRR 317 (321)
T ss_dssp CCS-CHHHHHHHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHHHHHHH
Confidence 998 9999999999999874
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=2.5e-44 Score=345.64 Aligned_cols=308 Identities=21% Similarity=0.274 Sum_probs=250.0
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
++ |+|||||||||||++|+++|+++|++|+++++...... ... .....+..+|+.+.+.+.+++ .++|
T Consensus 14 ~n-MKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~--~~~-------~~~~~~~~~D~~~~~~~~~~~--~~~d 81 (363)
T d2c5aa1 14 EN-LKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM--TED-------MFCDEFHLVDLRVMENCLKVT--EGVD 81 (363)
T ss_dssp SC-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSS--CGG-------GTCSEEEECCTTSHHHHHHHH--TTCS
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccch--hhh-------cccCcEEEeechhHHHHHHHh--hcCC
Confidence 56 77999999999999999999999999999987543321 111 145678889999999999988 6899
Q ss_pred EEEEcCcccCccC-CcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCC-------CCCCCCCCCh
Q 015080 148 AVMHFAAVAYVGE-STLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPIT-------EETPQAPINP 219 (413)
Q Consensus 148 vvi~~Ag~~~~~~-~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~-------e~~~~~~~~~ 219 (413)
+|||+|+...... ....+...+..|+.++.+++.++++.+++++|++||+++|+.....+.+ |..+..|.++
T Consensus 82 ~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~ 161 (363)
T d2c5aa1 82 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDA 161 (363)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSH
T ss_pred eEeecccccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCH
Confidence 9999998754422 3466778899999999999999999999999999999999866544433 4446788999
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCC
Q 015080 220 YGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTAD 299 (413)
Q Consensus 220 Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 299 (413)
|+.||.++|.+++.+.+++|++++++||+.+|||+........ ...............+ ...+| +
T Consensus 162 Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~g------~ 226 (363)
T d2c5aa1 162 FGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGRE--------KAPAAFCRKAQTSTDR-FEMWG------D 226 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCC--------CHHHHHHHHHHHCSSC-EEEES------C
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCccccccc--------cccccccccccccccc-ccccC------C
Confidence 9999999999999999989999999999999999754332111 0222333333333333 66666 8
Q ss_pred CceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHHHH
Q 015080 300 GTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIR 379 (413)
Q Consensus 300 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~ 379 (413)
+.+.++|+|++|+++++..+++.... ++||+++++.+++.|+++.+.+.+|.+.++...+... ......+|++|++
T Consensus 227 g~~~rd~i~v~D~~~~~~~~~~~~~~---~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~~~-~~~~~~~d~ska~ 302 (363)
T d2c5aa1 227 GLQTRSFTFIDECVEGVLRLTKSDFR---EPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIK 302 (363)
T ss_dssp SCCEECCEEHHHHHHHHHHHHHSSCC---SCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCC-CCSBCEECCHHHH
T ss_pred CCeEEEEeehhHHHHHHHHHHhCCCC---CeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCCCC-CccccccCHHHHH
Confidence 89999999999999999999886532 5999999999999999999999999998888776544 3445668999999
Q ss_pred HhcCcccccccHHHHHHHHHHHHHhccC
Q 015080 380 LELNWTAKYTNLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 380 ~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 407 (413)
++|||+|++ +++|+|+++++||+++.+
T Consensus 303 ~~LGw~p~~-sleegi~~ti~w~~~~~~ 329 (363)
T d2c5aa1 303 EKLGWAPNM-RLKEGLRITYFWIKEQIE 329 (363)
T ss_dssp HHHSCCCCC-CHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCC-CHHHHHHHHHHHHHHHHH
Confidence 999999998 999999999999988744
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.4e-45 Score=346.06 Aligned_cols=314 Identities=19% Similarity=0.236 Sum_probs=249.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
|+|||||||||||++|+++|+++|+ +|+++++......... . ..+++++.+|+++.+++.+.+. .++|+|
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~-------~-~~~~~~i~~Di~~~~~~~~~~~-~~~d~V 71 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-------N-HPHFHFVEGDISIHSEWIEYHV-KKCDVV 71 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-------T-CTTEEEEECCTTTCSHHHHHHH-HHCSEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhc-------c-CCCeEEEECccCChHHHHHHHH-hCCCcc
Confidence 4699999999999999999999995 8999986443222111 1 2689999999999877766443 479999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC-------CCCCCChhHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET-------PQAPINPYGK 222 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~-------~~~~~~~Y~~ 222 (413)
||+|+.........++...+.+|+.|+.++++++.+.+. +++++||+.+|+.......+|.. ...|.+.|+.
T Consensus 72 ih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~-~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~ 150 (342)
T d2blla1 72 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSV 150 (342)
T ss_dssp EECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC-EEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHH
T ss_pred ccccccccccccccCCccccccccccccccccccccccc-cccccccccccccccccccccccccccccccCCCcchhhh
Confidence 999998776666677888999999999999999999876 77899999999876554444332 3356778999
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCce
Q 015080 223 AKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTC 302 (413)
Q Consensus 223 sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 302 (413)
||.++|.++..+++++|++++++||+.+|||......+.... .......++..++.+.+ +.+.| ++++
T Consensus 151 sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~-~~~~~------~g~~ 218 (342)
T d2blla1 151 SKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIG-----SSRAITQLILNLVEGSP-IKLID------GGKQ 218 (342)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSC-----BCHHHHHHHHHHHHTCC-EEEGG------GSCC
T ss_pred cccchhhhhhhhhcccCceeEEeecccccccccccccccccc-----ccccchHHHHHHHhCCC-ccccC------CCCe
Confidence 999999999999999999999999999999976554433222 22567777777777777 88888 8999
Q ss_pred eeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc-ccHHHHHHHHHHHcCCCceeEecCCCC---------------
Q 015080 303 VRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG-RSVKEFVEACKKATSANIKVIYEPRRP--------------- 365 (413)
Q Consensus 303 ~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~-~s~~e~~~~i~~~~g~~~~~~~~~~~~--------------- 365 (413)
.++|+|++|+|+++..+++++. ...+++||+++++. +|+.|+++.+.+.+|........+...
T Consensus 219 ~r~~i~v~D~~~a~~~~~~~~~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (342)
T d2blla1 219 KRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGY 298 (342)
T ss_dssp EEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC----------
T ss_pred eeeecccccccceeeeehhhccccCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccceecccccccccc
Confidence 9999999999999999999643 22357999987764 799999999999998665543333211
Q ss_pred CCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccC
Q 015080 366 GDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRG 407 (413)
Q Consensus 366 ~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 407 (413)
.+.....+|++|++++|||+|++ +++|+|+++++||+++.+
T Consensus 299 ~~~~~~~~d~~k~~~~lgw~P~~-sleegl~~ti~~y~~~~~ 339 (342)
T d2blla1 299 QDVEHRKPSIRNAHRCLDWEPKI-DMQETIDETLDFFLRTVD 339 (342)
T ss_dssp --CCCCCBCCHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHSC
T ss_pred ccccccccCHHHHHHHHCCCcCC-CHHHHHHHHHHHHHhCcC
Confidence 12234457999999999999998 999999999999999876
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-44 Score=342.77 Aligned_cols=315 Identities=24% Similarity=0.250 Sum_probs=252.0
Q ss_pred eEE-EEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCC--chhhhhhhhhc-CCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 71 THV-LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN--IGAVKVLQELF-PEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 71 k~v-lITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~--~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
|+| ||||||||||++|+++|+++|++|++++|..... ........... ....+++++.+|++|.+.+.+++.+.++
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 80 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence 355 9999999999999999999999999999854321 11111111110 1125789999999999999999988899
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCC---CEEEEeccceecCCCCCCCCCCCCCCCCCChhHHH
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV---DTLIYSSTCATYGEPEKMPITEETPQAPINPYGKA 223 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~---~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~s 223 (413)
++++|+|+..........+...+++|+.||.++++++++.+. .++|++||+++||.....+++|+.+..|.++|+.|
T Consensus 81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~P~~~Yg~s 160 (347)
T d1t2aa_ 81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAA 160 (347)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCCCSHHHHH
T ss_pred ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCCCCCCCCHHHHH
Confidence 999999998766556677788899999999999999998764 48999999999998888899999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCcee
Q 015080 224 KKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCV 303 (413)
Q Consensus 224 K~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 303 (413)
|.++|.++..++++++++++++||+.+|||...... ..+.+...+.....+..+ +...| ++++.
T Consensus 161 K~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~---------~~~~~~~~i~~~~~~~~~-~~~~g------~g~~~ 224 (347)
T d1t2aa_ 161 KLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANF---------VTRKISRSVAKIYLGQLE-CFSLG------NLDAK 224 (347)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTS---------HHHHHHHHHHHHHHTSCS-CEEES------CTTCE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCc---------cccccceeeehhhcCCcc-eeecC------CCcce
Confidence 999999999998889999999999999999643211 111344455556666655 66677 89999
Q ss_pred eecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCC--------------------
Q 015080 304 RDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR-------------------- 363 (413)
Q Consensus 304 ~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-------------------- 363 (413)
++|+|++|+|+++..++++... +.|+++.+...++.+..+.+...++........+.
T Consensus 225 r~~i~v~D~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (347)
T d1t2aa_ 225 RDWGHAKDYVEAMWLMLQNDEP---EDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKY 301 (347)
T ss_dssp ECCEEHHHHHHHHHHHHHSSSC---CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGG
T ss_pred eeeeEecHHHHHHHHHhhcCCC---ccceeccccccccchhhhhhhhhhcceeeecccchhhhhhhhhcCCceeeecccC
Confidence 9999999999999999997654 47999999999999999999999997764332111
Q ss_pred -CCCCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhc
Q 015080 364 -RPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 364 -~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
.+.+.....+|++|++++|||+|++ +++|+|+++++|.++.
T Consensus 302 ~rp~~~~~~~~d~skak~~Lgw~P~~-sl~e~i~~~I~~~~~~ 343 (347)
T d1t2aa_ 302 YRPTEVDFLQGDCTKAKQKLNWKPRV-AFDELVREMVHADVEL 343 (347)
T ss_dssp SCSSCCCBCCBCCHHHHHHHCCCCCS-CHHHHHHHHHHHHHHH
T ss_pred CCCCCcCEeeECHHHHHHHHCCCcCC-CHHHHHHHHHHHHHHH
Confidence 1122334567999999999999999 9999999999876543
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-43 Score=330.45 Aligned_cols=300 Identities=19% Similarity=0.290 Sum_probs=241.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++|+++|+++|+.|+++++.. .+|+.|.+.+.++++...+|+|+
T Consensus 3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~d~v~ 59 (315)
T d1e6ua_ 3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------------ELNLLDSRAVHDFFASERIDQVY 59 (315)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-----------------------TCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch-----------------------hccccCHHHHHHHHhhcCCCEEE
Confidence 8999999999999999999999999988764211 16999999999999888899999
Q ss_pred EcCcccCc-cCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCC-----CCCChhHHHH
Q 015080 151 HFAAVAYV-GESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ-----APINPYGKAK 224 (413)
Q Consensus 151 ~~Ag~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~-----~~~~~Y~~sK 224 (413)
|+|+.... ......+...+++|+.+|.++++++++.+++++||+||+++||.....+++|+.+. .+.++|+.||
T Consensus 60 ~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK 139 (315)
T d1e6ua_ 60 LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAK 139 (315)
T ss_dssp ECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHH
T ss_pred EcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHHHH
Confidence 99976432 12345567788999999999999999999999999999999998877777776543 2345799999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceee
Q 015080 225 KMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304 (413)
Q Consensus 225 ~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 304 (413)
.++|.+++.+.+++|++++++||++||||+............ ............+..+ +.+.| ++.+.+
T Consensus 140 ~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~g------~g~~~~ 208 (315)
T d1e6ua_ 140 IAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIP----ALLRRFHEATAQKAPD-VVVWG------SGTPMR 208 (315)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHH----HHHHHHHHHHHHTCSE-EEEES------CSCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccce----eeeccchhhhhccCCc-eEEcC------CCceEE
Confidence 999999999999999999999999999997543221110000 0111122233334444 77777 889999
Q ss_pred ecccHHHHHHHHHHHHHhc-------CCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCCCccccccCHHH
Q 015080 305 DYIDVNDLVDAHVKALERA-------QPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTK 377 (413)
Q Consensus 305 ~~i~v~Dva~a~~~~~~~~-------~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k 377 (413)
+|+|++|+++++..++... .......++++.+.+.++.++++.+.+.+|.+..+.+.+.++.......+|++|
T Consensus 209 ~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~d~sk 288 (315)
T d1e6ua_ 209 EFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTR 288 (315)
T ss_dssp CEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCHH
T ss_pred EEEEeehhHHHHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCCCCCCCceeccCHHH
Confidence 9999999999999988642 122236899999999999999999999999999888877766666667789999
Q ss_pred HHHhcCcccccccHHHHHHHHHHHHHhcc
Q 015080 378 IRLELNWTAKYTNLQESLEIAWRWQKSHR 406 (413)
Q Consensus 378 ~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 406 (413)
++ +|||+|++ +++|+|+++++||++++
T Consensus 289 ~k-~Lg~~p~~-~l~e~i~~ti~w~~~N~ 315 (315)
T d1e6ua_ 289 LH-QLGWYHEI-SLEAGLASTYQWFLENQ 315 (315)
T ss_dssp HH-HTTCCCCC-CHHHHHHHHHHHHHHTC
T ss_pred HH-HcCCCCCC-CHHHHHHHHHHHHHHcC
Confidence 97 69999998 99999999999999874
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=9.9e-43 Score=331.01 Aligned_cols=314 Identities=21% Similarity=0.223 Sum_probs=245.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCC--chhhhhhhhh-cCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN--IGAVKVLQEL-FPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~--~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
|+|||||||||||++|+++|+++|++|++++|..... .......... ......+.++.+|+++.+++.+.++..++|
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~D 81 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 81 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhccc
Confidence 8999999999999999999999999999999854321 1111111000 011256889999999999999999888999
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-----CCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHH
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-----GVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGK 222 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~ 222 (413)
+|||+|+........+++...++.|+.++.+++.++++. ...++++.||+.+|+... .+++|+.|..|.+.|+.
T Consensus 82 ~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~-~~~~E~~~~~p~~~Y~~ 160 (339)
T d1n7ha_ 82 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTP-PPQSETTPFHPRSPYAA 160 (339)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSC-SSBCTTSCCCCCSHHHH
T ss_pred hhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCC-CCCCCCCCCCCcchhhH
Confidence 999999987665556778889999999999999998754 244788888888876654 46899999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCce
Q 015080 223 AKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTC 302 (413)
Q Consensus 223 sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 302 (413)
+|.++|.++..++++++++++++||+.||||...... ..+.+...+.....+..+ ..+.| ++.+
T Consensus 161 sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~---------~~~~i~~~~~~~~~~~~~-~~~~g------~~~~ 224 (339)
T d1n7ha_ 161 SKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENF---------VTRKITRALGRIKVGLQT-KLFLG------NLQA 224 (339)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTS---------HHHHHHHHHHHHHHTSCC-CEEES------CTTC
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCC---------CcchhhHHHHHHhcCCCC-eEEeC------CCCc
Confidence 9999999999999999999999999999999643210 011223333333444444 45556 8899
Q ss_pred eeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCcee--E--ecCCCCCCccccccCHHHH
Q 015080 303 VRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKV--I--YEPRRPGDYAEVYSDPTKI 378 (413)
Q Consensus 303 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~--~--~~~~~~~~~~~~~~d~~k~ 378 (413)
.++|+|++|+|+++..+++++.. ..+++..+...+..++++.+.+.+|...+. . .....+.+......|++|+
T Consensus 225 ~rd~~~v~D~a~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~~Ka 301 (339)
T d1n7ha_ 225 SRDWGFAGDYVEAMWLMLQQEKP---DDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKA 301 (339)
T ss_dssp EEECEEHHHHHHHHHHHHTSSSC---CEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHH
T ss_pred cccceeeehHHHHHHHHHhcCCC---CccccccccccccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeeeECHHHH
Confidence 99999999999999999997654 367777888999999999999999976542 1 1222344455667899999
Q ss_pred HHhcCcccccccHHHHHHHHHHHHHhc
Q 015080 379 RLELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 379 ~~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
+++|||+|++ +++|+|++|++|+++.
T Consensus 302 k~~LGw~P~~-~le~gi~~ti~~~~~~ 327 (339)
T d1n7ha_ 302 KEVLGWKPQV-GFEKLVKMMVDEDLEL 327 (339)
T ss_dssp HHHHCCCCCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHCCCcCC-CHHHHHHHHHHHHHHH
Confidence 9999999998 9999999999999765
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=4.9e-42 Score=325.59 Aligned_cols=313 Identities=22% Similarity=0.362 Sum_probs=249.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEEE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMH 151 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi~ 151 (413)
+|||||||||||++|+++|+++|++|+++++..+.... ..+..+.. ..+++++.+|++|.+++.++++..++|+|||
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~--~~~~~~~~-~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih 78 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGAT--DNLHWLSS-LGNFEFVHGDIRNKNDVTRLITKYMPDSCFH 78 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHH--HHHHHHHT-TCCCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccch--hHHHHhhc-cCCcEEEEcccCCHHHHHHHHHhcCCceEEe
Confidence 69999999999999999999999999999865444322 22222222 2689999999999999999998778999999
Q ss_pred cCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceec-CCCCCC----------------CCCCCCCC
Q 015080 152 FAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATY-GEPEKM----------------PITEETPQ 214 (413)
Q Consensus 152 ~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~-~~~~~~----------------~~~e~~~~ 214 (413)
+|+.........++...+++|+.||.+|++++.+.++.++|+.||+.++ +..... ...+..+.
T Consensus 79 ~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T d1orra_ 79 LAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQL 158 (338)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCC
T ss_pred ecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCcc
Confidence 9998766555667889999999999999999999988777776665544 433221 12334456
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHH----hccccceeE
Q 015080 215 APINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAA----RGIIAGLKV 290 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~ 290 (413)
.|.+.|+.+|...|.+.....+.+++....++++.+||+...+... ...++.++..+ ......+.+
T Consensus 159 ~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 228 (338)
T d1orra_ 159 DFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYD----------QGWVGWFCQKAVEIKNGINKPFTI 228 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTT----------BCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred ccccccccccchhhhhhhhhhhccCcccccccccceeecccccccc----------ccccchhhHHHHHHHhccCCceEE
Confidence 6788999999999999999998899999999999999876432211 13334343333 222233888
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecC--CCcccHHHHHHHHHHHcCCCceeEecCCCCCCc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGT--GKGRSVKEFVEACKKATSANIKVIYEPRRPGDY 368 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~--~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~ 368 (413)
+| ++.+.++|+|++|+|++++.++++.....+++||+.. +..+++.|+++.+.+.+|.+.++...+..+.+.
T Consensus 229 ~g------~g~~~r~~~~v~D~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~ 302 (338)
T d1orra_ 229 SG------NGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQ 302 (338)
T ss_dssp ES------SSCCEEECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCCSSCC
T ss_pred eC------CCceeEeeecccchhhHHHHHHhccccccCccccccccccccccHHHHHHHHHHHHCCCceeEeCCCCCCCc
Confidence 88 8999999999999999999999865433447999944 456899999999999999999988888777777
Q ss_pred cccccCHHHHHHhcCcccccccHHHHHHHHHHHHHh
Q 015080 369 AEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKS 404 (413)
Q Consensus 369 ~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~ 404 (413)
.....|++|++++|||+|++ +++|+|+++++|+++
T Consensus 303 ~~~~~d~~k~~~~Lg~~p~~-sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 303 RVFVADIKKITNAIDWSPKV-SAKDGVQKMYDWTSS 337 (338)
T ss_dssp SEECBCCHHHHHHHCCCCCS-CHHHHHHHHHHHHHH
T ss_pred CeeeECHHHHHHHHCCCcCC-CHHHHHHHHHHHHHc
Confidence 77788999999999999998 999999999999986
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=2.4e-41 Score=328.16 Aligned_cols=324 Identities=24% Similarity=0.242 Sum_probs=243.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC-------------Cchhh---hhhhhhcCCCCceEEEEccCCCH
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG-------------NIGAV---KVLQELFPEPGRLQFIYADLGDA 134 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~Dl~d~ 134 (413)
|+|||||||||||++|+++|+++|++|+++|...++ ..... +....+. +.+++++.+||+|.
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT--GKSIELYVGDICDF 79 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH--CCCCEEEESCTTSH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhc--CCCcEEEEccCCCH
Confidence 789999999999999999999999999999743211 11111 1111111 25799999999999
Q ss_pred HHHHHHhhcCCCcEEEEcCcccCccCCcCC---hHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccceecCCCCCCCCC-
Q 015080 135 KAVNKFFSENAFDAVMHFAAVAYVGESTLD---PLKYYHNITSNTLVVLESMARHGVD-TLIYSSTCATYGEPEKMPIT- 209 (413)
Q Consensus 135 ~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~---~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS~~~~~~~~~~~~~- 209 (413)
+.++++++..++|+|||+||....+.+..+ +...+++|+.||.++++++++.+.. ++++.||..+|+.... +..
T Consensus 80 ~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~-~~~~ 158 (393)
T d1i24a_ 80 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DIEE 158 (393)
T ss_dssp HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSS-CBCS
T ss_pred HHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccc-cccc
Confidence 999999988789999999997655443333 4457889999999999999998755 6777787878865432 111
Q ss_pred -------------CCCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCC-CCC---Ccccccccc
Q 015080 210 -------------EETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLG-EAP---RPELREHGR 272 (413)
Q Consensus 210 -------------e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~-~~~---~~~~~~~~~ 272 (413)
+..+..|.+.|+.||.++|.++..++++++++++++||+.||||+...... +.. .....-.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 238 (393)
T d1i24a_ 159 GYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGT 238 (393)
T ss_dssp SEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCC
T ss_pred ccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCcccccccccccccccccccccc
Confidence 123567888999999999999999999999999999999999997542210 000 000001124
Q ss_pred hHHHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEe--cCCCcccHHHHHHHHHH
Q 015080 273 ISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNV--GTGKGRSVKEFVEACKK 350 (413)
Q Consensus 273 ~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni--~~~~~~s~~e~~~~i~~ 350 (413)
++..++..+..+.+ +.++| ++.+.+||+|++|+|++++.++++..... .|++ ++++.+|+.|+++.+.+
T Consensus 239 ~i~~~~~~~~~~~~-~~i~g------~~~~~rd~v~v~D~~~a~~~~~~~~~~~g--~~~~~~~~~~~~si~el~~~i~~ 309 (393)
T d1i24a_ 239 ALNRFCVQAAVGHP-LTVYG------KGGQTRGYLDIRDTVQCVEIAIANPAKAG--EFRVFNQFTEQFSVNELASLVTK 309 (393)
T ss_dssp HHHHHHHHHHHTCC-EEEET------TSCCEEEEEEHHHHHHHHHHHHHSCCCTT--CEEEEEECSEEEEHHHHHHHHHH
T ss_pred chhhhhHHhhcCCe-eEEee------ecccccccccccchHHHHHHHHHhhcccc--eeeeecCCCCeeEHHHHHHHHHH
Confidence 66777777777777 99988 89999999999999999999999765532 2322 35677899999999988
Q ss_pred Hc---CCCceeEecC--CCCCCccccccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccCC
Q 015080 351 AT---SANIKVIYEP--RRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGG 408 (413)
Q Consensus 351 ~~---g~~~~~~~~~--~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~ 408 (413)
.. +.+.+....+ ...........|++|++ +|||+|++ +++++++++++|++++.+.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~LGw~P~~-~~~~~i~~~~~~~~~~k~~ 370 (393)
T d1i24a_ 310 AGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHY-LSDSLLDSLLNFAVQFKDR 370 (393)
T ss_dssp HHHTTTCCCCEEEECCSSCSCSSCCCCBCCCHHH-HTTCCCCC-CCHHHHHHHHHHHHHTGGG
T ss_pred HHHhhCCCcceeeccCCCCCCCccEecCCHHHHH-HcCCcccc-CHHHHHHHHHHHHHHHHHh
Confidence 75 4454544333 23344556678899997 59999999 9999999999999988653
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=8.9e-40 Score=312.59 Aligned_cols=314 Identities=20% Similarity=0.245 Sum_probs=248.0
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
+ |+|||||||||||++|+++|+++|++|++++|...+.....+..+. ...++++.+|++|++.+.++++...+|+
T Consensus 8 ~-KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~----~~~i~~~~~Dl~d~~~l~~~~~~~~~~~ 82 (356)
T d1rkxa_ 8 G-KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARV----ADGMQSEIGDIRDQNKLLESIREFQPEI 82 (356)
T ss_dssp T-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTT----TTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred C-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhc----ccCCeEEEeeccChHhhhhhhhhchhhh
Confidence 5 9999999999999999999999999999999877665544333221 2579999999999999999998888999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccceecCCC-CCCCCCCCCCCCCCChhHHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-VDTLIYSSTCATYGEP-EKMPITEETPQAPINPYGKAKKM 226 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~iV~~SS~~~~~~~-~~~~~~e~~~~~~~~~Y~~sK~~ 226 (413)
|+|+|+......+...+...+++|+.++.++++++++.+ ...+++.||..++... ...+..|+.+..|.++|+.+|..
T Consensus 83 v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~y~~~k~~ 162 (356)
T d1rkxa_ 83 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGC 162 (356)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHHH
T ss_pred hhhhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccccccCCCCcccccccc
Confidence 999999876666667888999999999999999999875 4455666655555433 44566777788899999999999
Q ss_pred HHHHHHHHHhh---------CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccC
Q 015080 227 AEDIILDFSKN---------SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST 297 (413)
Q Consensus 227 ~e~~~~~~~~~---------~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 297 (413)
.|..+..+..+ +++.++++||+.+|||++... ..+++.++..+.++.+ + +.+
T Consensus 163 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~------------~~~i~~~~~~~~~~~~-~-~~~----- 223 (356)
T d1rkxa_ 163 AELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWAL------------DRIVPDILRAFEQSQP-V-IIR----- 223 (356)
T ss_dssp HHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCS------------SCHHHHHHHHHHTTCC-E-ECS-----
T ss_pred chhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchh------------hHHHHHHHHHHhCCCc-e-EEe-----
Confidence 99998877653 578999999999999974321 1577778888776654 3 344
Q ss_pred CCCceeeecccHHHHHHHHHHHHHhcCCC-----CccEEEecCCCcccHHHHHHHHHHHcCCCceeEecC-CCCCCcccc
Q 015080 298 ADGTCVRDYIDVNDLVDAHVKALERAQPK-----KVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEP-RRPGDYAEV 371 (413)
Q Consensus 298 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~-----~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-~~~~~~~~~ 371 (413)
.+.+.++++|++|+|+++..++...... .+..++...+...++.++++.+.+.++...++.... ..+.+....
T Consensus 224 -~~~~~~~~~~v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 302 (356)
T d1rkxa_ 224 -NPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYL 302 (356)
T ss_dssp -CTTCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCC
T ss_pred -eccccccccccccccchhhhhhhhhcccccccccccccccccccccccchhhhhhHHHhCCCccEEEcCCCCCCCcCee
Confidence 7889999999999999999998864321 112333444567899999999999999887766433 234445566
Q ss_pred ccCHHHHHHhcCcccccccHHHHHHHHHHHHHhccCC
Q 015080 372 YSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGG 408 (413)
Q Consensus 372 ~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~ 408 (413)
.+|++|++++|||+|++ +++++|+++++||+...++
T Consensus 303 ~~d~skak~~LGw~P~~-~l~egi~~ti~wyk~~~~~ 338 (356)
T d1rkxa_ 303 KLDCSKAKMQLGWHPRW-NLNTTLEYIVGWHKNWLSG 338 (356)
T ss_dssp CBCCHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHTT
T ss_pred eEcHHHHHHHHCCCcCC-CHHHHHHHHHHHHHHHHcC
Confidence 78999999999999999 8999999999999986543
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=2.6e-38 Score=292.19 Aligned_cols=274 Identities=20% Similarity=0.173 Sum_probs=234.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++|+++|.++|++|++++|.. +|++|.++++++++..++|+||
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~------------------------~D~~d~~~~~~~l~~~~~d~vi 57 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD------------------------LDITNVLAVNKFFNEKKPNVVI 57 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT------------------------CCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh------------------------ccCCCHHHHHHHHHHcCCCEEE
Confidence 5699999999999999999999999999987521 6999999999999888899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
|+|+......+...+......|+..+..++..+.... ..++++||..+|+.....+..|.++..|...|+.+|...|.+
T Consensus 58 h~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~~~ss~~v~~~~~~~~~~e~~~~~~~~~~~~~k~~~e~~ 136 (281)
T d1vl0a_ 58 NCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG-AEIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGENF 136 (281)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT-CEEEEEEEGGGSCSCCSSCBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred eeccccccccccccchhhccccccccccccccccccc-ccccccccceeeeccccccccccccccchhhhhhhhhHHHHH
Confidence 9999876655666778888999999999999888875 489999999999988888899999999999999999999998
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHH
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~ 310 (413)
+++ .+.+++++||+.+|||+. .+...++..+....+ +.+.+ ++.++++|++
T Consensus 137 ~~~----~~~~~~i~R~~~vyG~~~----------------~~~~~~~~~~~~~~~-~~~~~--------~~~~~~i~v~ 187 (281)
T d1vl0a_ 137 VKA----LNPKYYIVRTAWLYGDGN----------------NFVKTMINLGKTHDE-LKVVH--------DQVGTPTSTV 187 (281)
T ss_dssp HHH----HCSSEEEEEECSEESSSS----------------CHHHHHHHHHHHCSE-EEEES--------SCEECCEEHH
T ss_pred HHH----hCCCccccceeEEeCCCc----------------ccccchhhhhccCCc-eeecC--------Cceeccchhh
Confidence 876 678999999999999973 556667777766655 55543 4789999999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCCCC-----CccccccCHHHHHHhcCcc
Q 015080 311 DLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPG-----DYAEVYSDPTKIRLELNWT 385 (413)
Q Consensus 311 Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~-----~~~~~~~d~~k~~~~lG~~ 385 (413)
|+|+++..++++... ++||+++++.+|+.|+++.+.+.+|.+.++...+.... .+....+|++|+++.+||+
T Consensus 188 D~~~~~~~~~~~~~~---g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~~~~~a~rp~~~~ld~~k~~~~~g~~ 264 (281)
T d1vl0a_ 188 DLARVVLKVIDEKNY---GTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDI 264 (281)
T ss_dssp HHHHHHHHHHHHTCC---EEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCC
T ss_pred hhhhhhhhhhhhccc---CceeEeCCCccchHHHHHHHHHHhCCCceEEeccHHHcCCcCCCccccccCHHHHHHHhCCC
Confidence 999999999998664 49999999999999999999999999988876553321 1223457999999999999
Q ss_pred cccccHHHHHHHHHHHHH
Q 015080 386 AKYTNLQESLEIAWRWQK 403 (413)
Q Consensus 386 p~~~~~~e~l~~~~~~~~ 403 (413)
|+ +|+|+|+++++|++
T Consensus 265 ~~--~~~~~l~~~l~~l~ 280 (281)
T d1vl0a_ 265 TR--EWKESLKEYIDLLQ 280 (281)
T ss_dssp CC--BHHHHHHHHHHHHT
T ss_pred CC--CHHHHHHHHHHHhc
Confidence 87 79999999999986
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=7.1e-37 Score=291.02 Aligned_cols=305 Identities=17% Similarity=0.134 Sum_probs=218.0
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
.| |+|||||||||||++|+++|+++|++|+++.|+..+.....+..... ........+.+|++|.+++.+++ .++|
T Consensus 10 ~g-k~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~--~~~~ 85 (342)
T d1y1pa1 10 EG-SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAK-YPGRFETAVVEDMLKQGAYDEVI--KGAA 85 (342)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH-STTTEEEEECSCTTSTTTTTTTT--TTCS
T ss_pred Cc-CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhcc-ccccccEEEeccccchhhhhhhc--ccch
Confidence 36 99999999999999999999999999999887543322222222211 22244556789999999999988 7899
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccceecCCCC--C--C----------------
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-GVDTLIYSSTCATYGEPE--K--M---------------- 206 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~iV~~SS~~~~~~~~--~--~---------------- 206 (413)
+|+|+|+.... ...+...+..|+.||.++++++.+. +++++|++||+++++... . .
T Consensus 86 ~v~~~a~~~~~---~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 162 (342)
T d1y1pa1 86 GVAHIASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAK 162 (342)
T ss_dssp EEEECCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHH
T ss_pred hhhhhcccccc---cccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCccccccccccccccccc
Confidence 99999997542 3457778899999999999999987 689999999976543221 1 1
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcc
Q 015080 207 PITEETPQAPINPYGKAKKMAEDIILDFSKNS--DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGI 284 (413)
Q Consensus 207 ~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (413)
...|+.+..|.++|+.||..+|.+++.+.+++ +++++++||+.+|||...+... ......++..+.++
T Consensus 163 ~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~----------~~~~~~~~~~l~~g 232 (342)
T d1y1pa1 163 TLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQ----------SGSTSGWMMSLFNG 232 (342)
T ss_dssp HSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTC----------CCHHHHHHHHHHTT
T ss_pred cccccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCcccc----------ccchHHHHHHHHcC
Confidence 12344456667789999999999999988774 5788999999999986432210 13445555555555
Q ss_pred ccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcC-CCceeEecCC
Q 015080 285 IAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATS-ANIKVIYEPR 363 (413)
Q Consensus 285 ~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~ 363 (413)
.. .... .+.+.++|+|++|+|++++.+++++... +.|++++++.+++.|+++.|.+.++ ...+... +.
T Consensus 233 ~~-~~~~-------~~~~~~~~v~v~Dva~~~i~~l~~~~~~--g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~-~~ 301 (342)
T d1y1pa1 233 EV-SPAL-------ALMPPQYYVSAVDIGLLHLGCLVLPQIE--RRRVYGTAGTFDWNTVLATFRKLYPSKTFPADF-PD 301 (342)
T ss_dssp CC-CHHH-------HTCCSEEEEEHHHHHHHHHHHHHCTTCC--SCEEEECCEEECHHHHHHHHHHHCTTSCCCCCC-CC
T ss_pred Cc-Cccc-------CCccceeeeeHHHHHHHHHHhhcCcccc--ceEEEEcCCceEHHHHHHHHHHHcCCCcCCccC-Cc
Confidence 43 2221 3456689999999999999999976654 4677888999999999999999984 3333222 11
Q ss_pred CCCCcccc-ccCHHHHHHhcCcccccccHHHHHHHHHHH
Q 015080 364 RPGDYAEV-YSDPTKIRLELNWTAKYTNLQESLEIAWRW 401 (413)
Q Consensus 364 ~~~~~~~~-~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~ 401 (413)
........ ...+.+..+.|||.+.+ +++|+|+++++.
T Consensus 302 ~~~~~~~~~~~~s~~~~k~lg~~~~~-~lee~i~d~I~s 339 (342)
T d1y1pa1 302 QGQDLSKFDTAPSLEILKSLGRPGWR-SIEESIKDLVGS 339 (342)
T ss_dssp CCCCCCEECCHHHHHHHHHTTCCSCC-CHHHHHHHHHCC
T ss_pred cCcccccccchHHHHHHHHcCCCCCc-CHHHHHHHHHHh
Confidence 11111111 11233444579999877 899999999853
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.6e-35 Score=272.05 Aligned_cols=296 Identities=23% Similarity=0.312 Sum_probs=207.5
Q ss_pred EEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHH-Hhhc---CCCc
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNK-FFSE---NAFD 147 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~---~~~d 147 (413)
|||||||||||++|+++|+++|+ +|+++++..+... ... +.+. ..+|..+.+.+.. .... ..++
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~-~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-FVN-LVDL---------NIADYMDKEDFLIQIMAGEEFGDVE 70 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG-GHH-HHTS---------CCSEEEEHHHHHHHHHTTCCCSSCC
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcch-hhc-cccc---------chhhhccchHHHHHHhhhhcccchh
Confidence 89999999999999999999996 6888875443221 111 1111 1133333333332 2211 5689
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHH
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMA 227 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~ 227 (413)
+|+|+|+.... .........+.|+.++.+++++++..++ ++|+.||+.+++........++.+..|.+.|+.+|.++
T Consensus 71 ~i~~~aa~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~i-~~v~~ss~~~~~~~~~~~~~~~~~~~~~~~Y~~~K~~~ 147 (307)
T d1eq2a_ 71 AIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLF 147 (307)
T ss_dssp EEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHHHHH
T ss_pred hhhhhcccccc--cccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccchh
Confidence 99999986543 3346677888999999999999999987 47777777777766666677777788899999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecc
Q 015080 228 EDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307 (413)
Q Consensus 228 e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i 307 (413)
|.+++.+.++++++++++||+.+|||..... ...+.+...+...+..+.......| ++...++|+
T Consensus 148 e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~r~~~ 212 (307)
T d1eq2a_ 148 DEYVRQILPEANSQIVGFRYFNVYGPREGHK---------GSMASVAFHLNTQLNNGESPKLFEG------SENFKRDFV 212 (307)
T ss_dssp HHHHHHHGGGCSSCEEEEEECEEESSSCGGG---------GGGSCHHHHHHHHHHC-------------------CBCEE
T ss_pred hhhccccccccccccccccceeEeecccccc---------ccccccccccccccccccceeeecC------ccceeeeee
Confidence 9999999999999999999999999974321 1122556667777777665344445 778889999
Q ss_pred cHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCCC----CCCccccccCHHHHHHhcC
Q 015080 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRR----PGDYAEVYSDPTKIRLELN 383 (413)
Q Consensus 308 ~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~----~~~~~~~~~d~~k~~~~lG 383 (413)
|++|+++++..++++... +.||+++++..++.|+++++.+..+. .++.+.+.. .........|++|+++.+|
T Consensus 213 ~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~si~~i~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~~ 288 (307)
T d1eq2a_ 213 YVGDVADVNLWFLENGVS---GIFNLGTGRAESFQAVADATLAYHKK-GQIEYIPFPDKLKGRYQAFTQADLTNLRAAGY 288 (307)
T ss_dssp EHHHHHHHHHHHHHHCCC---EEEEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHHTTC
T ss_pred ecccHHHHHHHHhhhccc---cccccccccchhHHHHHHHHHHhcCC-CCeeEeeCCccCCCCCceeeecCHHHHHHHHC
Confidence 999999999999997653 59999999999999999999877652 222222211 1122234569999999999
Q ss_pred cccccccHHHHHHHHHHHH
Q 015080 384 WTAKYTNLQESLEIAWRWQ 402 (413)
Q Consensus 384 ~~p~~~~~~e~l~~~~~~~ 402 (413)
|+|++ +++|+|+++++|+
T Consensus 289 ~~p~~-sl~egi~~~i~w~ 306 (307)
T d1eq2a_ 289 DKPFK-TVAEGVTEYMAWL 306 (307)
T ss_dssp CCCCC-CHHHHHHHHHHHT
T ss_pred CCCCC-CHHHHHHHHHHhC
Confidence 99998 9999999999996
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.2e-34 Score=264.40 Aligned_cols=283 Identities=16% Similarity=0.180 Sum_probs=216.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|||||||||||++|+++|.+.|+.| .+++.... +.+|++|.+.+++++++.++|+||
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v-~~~~~~~~--------------------~~~Dl~~~~~~~~~i~~~~~D~Vi 59 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLI-ALDVHSKE--------------------FCGDFSNPKGVAETVRKLRPDVIV 59 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEE-EECTTCSS--------------------SCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEE-EEECCCcc--------------------ccCcCCCHHHHHHHHHHcCCCEEE
Confidence 459999999999999999999998754 44432211 237999999999999887899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDI 230 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 230 (413)
|+||...+..+...+...++.|+.++.++++++++.+. +++++||+.+|+.....+.+|+.+..|.+.|+.+|.++|.+
T Consensus 60 h~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~~ss~~~~~~~~~~~~~E~~~~~p~~~y~~~k~~~e~~ 138 (298)
T d1n2sa_ 60 NAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKA 138 (298)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTTSCCCCSSHHHHHHHHHHHH
T ss_pred EecccccccccccCccccccccccccccchhhhhcccc-ccccccccccccCCCCCCCccccccCCCchHhhhhhhhhhh
Confidence 99998877667788999999999999999999988874 89999999999888888999999999999999999999998
Q ss_pred HHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHH
Q 015080 231 ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVN 310 (413)
Q Consensus 231 ~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~ 310 (413)
+.... ....++|++..|+.... .....+...+....+ +.+. +....+++|+.
T Consensus 139 ~~~~~----~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~ 190 (298)
T d1n2sa_ 139 LQDNC----PKHLIFRTSWVYAGKGN---------------NFAKTMLRLAKERQT-LSVI--------NDQYGAPTGAE 190 (298)
T ss_dssp HHHHC----SSEEEEEECSEECSSSC---------------CHHHHHHHHHHHCSE-EEEE--------CSCEECCEEHH
T ss_pred HHhhh----cccccccccceeeccCC---------------ccchhhhhhhcccce-eecc--------cceeecccccc
Confidence 87743 34566666665543211 333344454554443 5443 45678999999
Q ss_pred HHHHHHHHHHHhc--CCCCccEEEecCCCcccHHHHHHHHHHHcCC---Ccee---EecCCC-----CCCccccccCHHH
Q 015080 311 DLVDAHVKALERA--QPKKVGIYNVGTGKGRSVKEFVEACKKATSA---NIKV---IYEPRR-----PGDYAEVYSDPTK 377 (413)
Q Consensus 311 Dva~a~~~~~~~~--~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~---~~~~---~~~~~~-----~~~~~~~~~d~~k 377 (413)
|+++++..++... .....++||+++++..++.++++.+.+..+. ..+. ...+.. ...+....+|++|
T Consensus 191 d~~~~~~~~i~~~~~~~~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K 270 (298)
T d1n2sa_ 191 LLADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEK 270 (298)
T ss_dssp HHHHHHHHHHHHHHHCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHH
T ss_pred hHHHHHHHHHhhhhccccccccccccCCCceecHHHHHHHHhhhhccCccccccceeeeehhhcCccCCCccccccCHHH
Confidence 9999998887631 2223479999999999999999999877542 2211 111111 1112344689999
Q ss_pred HHHhcCcccccccHHHHHHHHHHHHHhc
Q 015080 378 IRLELNWTAKYTNLQESLEIAWRWQKSH 405 (413)
Q Consensus 378 ~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 405 (413)
+++.|||+|+ +|+++|+++++++++.
T Consensus 271 ~~~~~~~~~~--~~~~gl~~~i~~~~~~ 296 (298)
T d1n2sa_ 271 FQRNFDLILP--QWELGVKRMLTEMFTT 296 (298)
T ss_dssp HHHHHTCCCC--BHHHHHHHHHHHHHSC
T ss_pred HHHHHCCCCC--cHHHHHHHHHHHHHhh
Confidence 9999999987 7999999999998764
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.96 E-value=4e-28 Score=219.39 Aligned_cols=226 Identities=12% Similarity=0.048 Sum_probs=169.2
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+++ |++|||||+++||+++|+.|+++|++|++++|+....+++.+.++ ..+.++.++.+|++|++++++++++
T Consensus 7 ~len-KvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~---~~g~~~~~~~~Dvt~~~~v~~~~~~~~ 82 (251)
T d2c07a1 7 CGEN-KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK---SFGYESSGYAGDVSKKEEISEVINKIL 82 (251)
T ss_dssp CCSS-CEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHH---TTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4667 999999999999999999999999999999875544444444443 3356799999999999999988876
Q ss_pred ---CCCcEEEEcCcccCccCCc----CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
+++|++|||||........ ++.+..+++|+.+ ++.+++.|++++.++||++||...+....
T Consensus 83 ~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~-------- 154 (251)
T d2c07a1 83 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNV-------- 154 (251)
T ss_dssp HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT--------
T ss_pred HhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCCC--------
Confidence 6899999999986554432 3345567788888 56677778888889999999977653222
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
...+|+.||++.+.+++.++.| +||++++|.||.|-.+... .+.+..........|
T Consensus 155 ---~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~---------------~~~~~~~~~~~~~~p--- 213 (251)
T d2c07a1 155 ---GQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTD---------------KISEQIKKNIISNIP--- 213 (251)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC--------------------CCHHHHHHHHTTCT---
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEeccccc---------------ccCHHHHHHHHhcCC---
Confidence 2678999999999999999988 6899999999999876422 222334444443322
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...+...+|+|+++++++.... --.|+++.+.+|-
T Consensus 214 -------------l~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 249 (251)
T d2c07a1 214 -------------AGRMGTPEEVANLACFLSSDKSGYINGRVFVIDGGL 249 (251)
T ss_dssp -------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred -------------CCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECCCc
Confidence 1236788999999999886433 2355789887763
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.96 E-value=9.8e-29 Score=230.39 Aligned_cols=245 Identities=16% Similarity=0.118 Sum_probs=179.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchh-hhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGA-VKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
++|||||||||||++++++|+++|++|++++|+....... .+.+.... ..+++++++|++|.+.+.+.+ .+.+++
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~--~~~v~~v~~d~~d~~~~~~~~--~~~~~~ 79 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK--QLGAKLIEASLDDHQRLVDAL--KQVDVV 79 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH--TTTCEEECCCSSCHHHHHHHH--TTCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhc--cCCcEEEEeecccchhhhhhc--cCcchh
Confidence 6799999999999999999999999999998865443322 22222221 257999999999999999999 788999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAED 229 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 229 (413)
+++++..... .|..++.+++.++.+.+..++++.||.+++... +..+..+...|..+|..++.
T Consensus 80 ~~~~~~~~~~-----------~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~~------~~~~~~~~~~~~~~~~~~~~ 142 (312)
T d1qyda_ 80 ISALAGGVLS-----------HHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDI------MEHALQPGSITFIDKRKVRR 142 (312)
T ss_dssp EECCCCSSSS-----------TTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTS------CCCCCSSTTHHHHHHHHHHH
T ss_pred hhhhhhcccc-----------cchhhhhHHHHHHHHhcCCcEEEEeeccccCCC------cccccchhhhhhHHHHHHHH
Confidence 9998754321 244556778888888877788888886654322 23344556667777777766
Q ss_pred HHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccH
Q 015080 230 IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 230 ~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
+... .+++++++||+.+||+....... ........... +.+++ ++++.++|+|+
T Consensus 143 ~~~~----~~~~~~i~r~~~~~g~~~~~~~~---------------~~~~~~~~~~~-~~~~~------~g~~~~~~i~v 196 (312)
T d1qyda_ 143 AIEA----ASIPYTYVSSNMFAGYFAGSLAQ---------------LDGHMMPPRDK-VLIYG------DGNVKGIWVDE 196 (312)
T ss_dssp HHHH----TTCCBCEEECCEEHHHHTTTSSC---------------TTCCSSCCSSE-ECCBT------TSCSEEEEECH
T ss_pred hhcc----cccceEEeccceeecCCccchhh---------------HHHHhhhcccc-ccccc------ccccccceeeH
Confidence 5544 89999999999999975322110 00111112222 55555 88899999999
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecC
Q 015080 310 NDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEP 362 (413)
Q Consensus 310 ~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~ 362 (413)
+|+|++++.++.++.......|++++++.+|+.|+++.+.+.+|.+.+....+
T Consensus 197 ~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~ 249 (312)
T d1qyda_ 197 DDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 249 (312)
T ss_dssp HHHHHHHHHHTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred HHHHHHHHHHhcCccccCceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECC
Confidence 99999999999876654434577777788999999999999999998876655
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=3.5e-28 Score=218.57 Aligned_cols=223 Identities=13% Similarity=0.052 Sum_probs=166.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |++|||||+++||+++|+.|+++|++|++++|+.... .+..+++ +.++.++.+|++|++++++++++
T Consensus 2 l~g-K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l---~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 74 (243)
T d1q7ba_ 2 FEG-KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGA---QAISDYL---GANGKGLMLNVTDPASIESVLEKIRA 74 (243)
T ss_dssp CTT-CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHH---HHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH---HHHHHHh---CCCCcEEEEEecCHHHhhhhhhhhhc
Confidence 567 9999999999999999999999999999998754333 3333333 24688899999999999888866
Q ss_pred --CCCcEEEEcCcccCccCCc----CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
+++|+||||||........ ++.+..+++|+.+ ++.+++.|++++.++||++||...+....
T Consensus 75 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~--------- 145 (243)
T d1q7ba_ 75 EFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNG--------- 145 (243)
T ss_dssp HTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT---------
T ss_pred ccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCCC---------
Confidence 6899999999987655432 3344568889988 56677777888888999999977653222
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
...+|+.||++.+.+++.++.| +||++++|.||.|-.+... .+.+..........|
T Consensus 146 --~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~---------------~~~~~~~~~~~~~~p---- 204 (243)
T d1q7ba_ 146 --GQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTR---------------ALSDDQRAGILAQVP---- 204 (243)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH---------------TSCHHHHHHHHTTCT----
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhh---------------hhhhhHHHHHHhcCC----
Confidence 2678999999999999999988 7899999999998754211 112222233332222
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...+...+|+|+++.+++.... .-.|+++.+.+|-.
T Consensus 205 ------------l~R~~~pedvA~~v~fL~S~~s~~itGq~i~vdGG~~ 241 (243)
T d1q7ba_ 205 ------------AGRLGGAQEIANAVAFLASDEAAYITGETLHVNGGMY 241 (243)
T ss_dssp ------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred ------------CCCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCeE
Confidence 1246789999999999886433 23568999977643
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.1e-27 Score=216.84 Aligned_cols=227 Identities=15% Similarity=0.135 Sum_probs=170.7
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
+++| |++|||||+++||+++|++|+++|++|++++|+..+.+++.+.+++. +.++.++++|++|++++++++++
T Consensus 8 ~L~g-K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~---g~~~~~~~~Dvs~~~~~~~~~~~~~ 83 (255)
T d1fmca_ 8 RLDG-KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL---GGQAFACRCDITSEQELSALADFAI 83 (255)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc---CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 5678 99999999999999999999999999999997655545555555443 56799999999999999888765
Q ss_pred ---CCCcEEEEcCcccCccCC---cCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES---TLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~---~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|++|||||+...... .++.+..+++|+.+ ++.+++.+++.+.++||++||.+.+....
T Consensus 84 ~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~~--------- 154 (255)
T d1fmca_ 84 SKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNI--------- 154 (255)
T ss_dssp HHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCT---------
T ss_pred HHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhcccc---------
Confidence 689999999998655433 23344568889888 55567777888888999999977653322
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
...+|+.||++.+.+++.++.| +||++++|.||.|-.+.... .+.+.......+..|
T Consensus 155 --~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~--------------~~~~e~~~~~~~~~p---- 214 (255)
T d1fmca_ 155 --NMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS--------------VITPEIEQKMLQHTP---- 214 (255)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT--------------TCCHHHHHHHHHTCS----
T ss_pred --ccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhc--------------cCCHHHHHHHHhcCC----
Confidence 3678999999999999999988 78999999999987653110 112233333333222
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...+...+|+|+++++++.... --.|+++.+.+|.
T Consensus 215 ------------l~R~g~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 250 (255)
T d1fmca_ 215 ------------IRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGG 250 (255)
T ss_dssp ------------SCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred ------------CCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECcCc
Confidence 1245788999999999986432 2355799997764
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.95 E-value=3.3e-27 Score=212.84 Aligned_cols=226 Identities=16% Similarity=0.129 Sum_probs=162.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |++|||||+++||+++|+.|+++|++|++++|+.. +...+.+++. +.++.++.+|++|++++++++++
T Consensus 2 rL~g-KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~--~~~~~~~~~~---g~~~~~~~~Dvs~~~~v~~~~~~~~ 75 (247)
T d2ew8a1 2 RLKD-KLAVITGGANGIGRAIAERFAVEGADIAIADLVPA--PEAEAAIRNL---GRRVLTVKCDVSQPGDVEAFGKQVI 75 (247)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHT---TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch--HHHHHHHHHc---CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 4668 99999999999999999999999999999997543 3344444443 46799999999999999988765
Q ss_pred ---CCCcEEEEcCcccCccCC----cCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
+++|++|||||+...... .++.+..+++|+.+ ++.+++.|++++.++||++||.......
T Consensus 76 ~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~--------- 146 (247)
T d2ew8a1 76 STFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKI--------- 146 (247)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC---------
T ss_pred HHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcccC---------
Confidence 689999999998655432 33455678899988 6667778888888899999997765322
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
....+|+.||++.+.+++.++.| +||++++|.||.|-.+..... ......+......
T Consensus 147 --~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~--------------~~~~~~~~~~~~~---- 206 (247)
T d2ew8a1 147 --EAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEAS--------------ALSAMFDVLPNML---- 206 (247)
T ss_dssp --SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC--------------------------------CTT----
T ss_pred --cccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCcccccc--------------ccchhHHHHHHHh----
Confidence 22678999999999999999988 689999999999887642210 0011111111100
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
.....+...+|+|+++++++.... --.|+++.+.+|.
T Consensus 207 -----------~~l~r~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 244 (247)
T d2ew8a1 207 -----------QAIPRLQVPLDLTGAAAFLASDDASFITGQTLAVDGGM 244 (247)
T ss_dssp -----------SSSCSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESSSC
T ss_pred -----------ccCCCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCE
Confidence 111235678999999999886433 2356799997764
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.6e-27 Score=207.02 Aligned_cols=202 Identities=16% Similarity=0.166 Sum_probs=156.1
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
+||+|+||||||+||++++++|+++|++|++++|+..+.... ...+++++.+|++|.+++.+++ .++|+
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~---------~~~~~~~~~gD~~d~~~l~~al--~~~d~ 70 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE---------GPRPAHVVVGDVLQAADVDKTV--AGQDA 70 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS---------SCCCSEEEESCTTSHHHHHHHH--TTCSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc---------cccccccccccccchhhHHHHh--cCCCE
Confidence 468999999999999999999999999999999865432211 1357899999999999999999 78999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
|||++|...... ..+++..+++++++++++++++|+|++||..+++.... .+.....|...|..+|
T Consensus 71 vi~~~g~~~~~~-------~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~-------~~~~~~~~~~~~~~~e 136 (205)
T d1hdoa_ 71 VIVLLGTRNDLS-------PTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK-------VPPRLQAVTDDHIRMH 136 (205)
T ss_dssp EEECCCCTTCCS-------CCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTC-------SCGGGHHHHHHHHHHH
T ss_pred EEEEeccCCchh-------hhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCcc-------ccccccccchHHHHHH
Confidence 999998643211 12356788999999999999999999999888765432 1223457888999999
Q ss_pred HHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeeccc
Q 015080 229 DIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308 (413)
Q Consensus 229 ~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~ 308 (413)
.++++ .|+++++|||+.+++....+. ..+.. ++.....+|+
T Consensus 137 ~~l~~----~~~~~tiirp~~~~~~~~~~~-----------------------------~~~~~------~~~~~~~~i~ 177 (205)
T d1hdoa_ 137 KVLRE----SGLKYVAVMPPHIGDQPLTGA-----------------------------YTVTL------DGRGPSRVIS 177 (205)
T ss_dssp HHHHH----TCSEEEEECCSEEECCCCCSC-----------------------------CEEES------SSCSSCSEEE
T ss_pred HHHHh----cCCceEEEecceecCCCCccc-----------------------------EEEee------CCCCCCCcCC
Confidence 87765 899999999999986432110 11121 4555668899
Q ss_pred HHHHHHHHHHHHHhcCCCCccEEEecC
Q 015080 309 VNDLVDAHVKALERAQPKKVGIYNVGT 335 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~~~~~~~yni~~ 335 (413)
++|+|++++.+++++... ++.+.++.
T Consensus 178 ~~DvA~~~~~~l~~~~~~-g~~~~~s~ 203 (205)
T d1hdoa_ 178 KHDLGHFMLRCLTTDEYD-GHSTYPSH 203 (205)
T ss_dssp HHHHHHHHHHTTSCSTTT-TCEEEEEC
T ss_pred HHHHHHHHHHHhCCCCCC-CEEEecCC
Confidence 999999999999977643 46777753
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.95 E-value=2.1e-27 Score=215.39 Aligned_cols=237 Identities=14% Similarity=0.135 Sum_probs=169.4
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |++|||||+++||+++|+.|+++|++|++++|+....+++.+.+.+... +.++.++.+|++|++++++++++
T Consensus 2 l~g-K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~-~~~~~~~~~Dvt~~~~v~~~~~~~~~ 79 (258)
T d1iy8a_ 2 FTD-RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP-DAEVLTTVADVSDEAQVEAYVTATTE 79 (258)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCT-TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCC-CCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 567 9999999999999999999999999999999866555555555554433 35788999999999999888766
Q ss_pred --CCCcEEEEcCcccCcc-C----CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVG-E----STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~-~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
+++|+||||||+..+. . ..++.+..+++|+.+ ++.+++.|++.+.++||++||.+.+-..
T Consensus 80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~--------- 150 (258)
T d1iy8a_ 80 RFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGI--------- 150 (258)
T ss_dssp HHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBC---------
T ss_pred HhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccCC---------
Confidence 6899999999975432 2 223445578899998 4556667777788899999997764322
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
....+|+.||++.+.+++.++.| +||+++.|.||.|..|......... ................
T Consensus 151 --~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~-------~~~~~~~~~~~~~~~~---- 217 (258)
T d1iy8a_ 151 --GNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQL-------DPENPRKAAEEFIQVN---- 217 (258)
T ss_dssp --SSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHH-------CTTCHHHHHHHHHTTC----
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhc-------CcccHHHHHHHHHhcC----
Confidence 22678999999999999999988 6899999999998764210000000 0000111112222211
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCcc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKGR 339 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~~ 339 (413)
....+...+|+|+++++++... .--.|+++.+.+|.+.
T Consensus 218 ------------pl~R~~~p~dvA~~v~fL~S~~s~~itG~~i~VDGG~sa 256 (258)
T d1iy8a_ 218 ------------PSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQSA 256 (258)
T ss_dssp ------------TTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTTT
T ss_pred ------------CCCCCcCHHHHHHHHHHHhCchhcCCcCceEEcCcchhc
Confidence 1224678999999999988643 2235679999887653
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=2.6e-27 Score=212.71 Aligned_cols=221 Identities=14% Similarity=0.086 Sum_probs=163.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |++|||||+++||.++|++|+++|++|++++|+.. .+.+..++ .++.++.||++|++++++++++
T Consensus 2 ~L~g-K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~---~l~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~ 72 (242)
T d1ulsa_ 2 RLKD-KAVLITGAAHGIGRATLELFAKEGARLVACDIEEG---PLREAAEA-----VGAHPVVMDVADPASVERGFAEAL 72 (242)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHT-----TTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH---HHHHHHHH-----cCCeEEEEecCCHHHHHHHHHHHH
Confidence 5678 99999999999999999999999999999987532 33333222 3577899999999999988766
Q ss_pred ---CCCcEEEEcCcccCccCC----cCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..+... .++.+..+++|+.+ ++.+++.+++.+.+.++++||....+.
T Consensus 73 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~~---------- 142 (242)
T d1ulsa_ 73 AHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGN---------- 142 (242)
T ss_dssp HHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCC----------
T ss_pred HhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccccccCC----------
Confidence 689999999998765443 23445578899998 445666666667778888888654332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
.+..+|+.||++.+.+++.++.| +||+++.|.||.|-.+... ..............|
T Consensus 143 --~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~---------------~~~~~~~~~~~~~~p--- 202 (242)
T d1ulsa_ 143 --LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTA---------------KVPEKVREKAIAATP--- 202 (242)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTS---------------SSCHHHHHHHHHTCT---
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhh---------------cCCHHHHHHHHhcCC---
Confidence 23678999999999999999888 6899999999999876422 122233333333222
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...+...+|+|+++++++.... --.|+++.+.+|.+
T Consensus 203 -------------l~R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~t 239 (242)
T d1ulsa_ 203 -------------LGRAGKPLEVAYAALFLLSDESSFITGQVLFVDGGRT 239 (242)
T ss_dssp -------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred -------------CCCCCCHHHHHHHHHHHhchhhCCCCCcEEEECCCcc
Confidence 1235688999999999886433 23568999977754
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.95 E-value=2.4e-27 Score=212.12 Aligned_cols=215 Identities=15% Similarity=0.097 Sum_probs=160.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+++ |++|||||+++||+++|+.|+++|++|++++|+.... .++..+++|++|++++++++++
T Consensus 4 sl~g-K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~--------------~~~~~~~~Dv~~~~~v~~~~~~~~ 68 (237)
T d1uzma1 4 PFVS-RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP--------------KGLFGVEVDVTDSDAVDRAFTAVE 68 (237)
T ss_dssp CCCC-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC--------------TTSEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh--------------cCceEEEEecCCHHHHHHHHHHHH
Confidence 4667 9999999999999999999999999999999865432 4677899999999999888766
Q ss_pred ---CCCcEEEEcCcccCccCC----cCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|++|||||+...... .++.+..+++|+.+ ++.+++.+++.+.++||++||.+.....
T Consensus 69 ~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~--------- 139 (237)
T d1uzma1 69 EHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGI--------- 139 (237)
T ss_dssp HHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-------------
T ss_pred HhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCC---------
Confidence 689999999998655442 23445578899998 5567788888888899999997765322
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
....+|+.||++.+.+++.++.| +||++++|.||.|..+... .+.+...+...+..|
T Consensus 140 --~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~---------------~~~~~~~~~~~~~~p--- 199 (237)
T d1uzma1 140 --GNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTR---------------ALDERIQQGALQFIP--- 199 (237)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH---------------HSCHHHHHHHGGGCT---
T ss_pred --cccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhh---------------ccCHHHHHHHHhcCC---
Confidence 22678999999999999999988 7899999999998764210 112222333332222
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...+...+|+|+++++++.... --.|+++.+.+|-
T Consensus 200 -------------l~R~~~pedvA~~v~fL~S~~s~~itG~~i~vdGG~ 235 (237)
T d1uzma1 200 -------------AKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGGM 235 (237)
T ss_dssp -------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred -------------CCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECCCC
Confidence 1246789999999999886432 2356799997663
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.95 E-value=2.9e-27 Score=212.30 Aligned_cols=219 Identities=14% Similarity=0.112 Sum_probs=164.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+++ |++|||||+++||+++|+.|+++|++|++++|+.. ++.+..+++ +..+.++++|++|++++++++++
T Consensus 3 ~L~g-K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~---~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~ 75 (244)
T d1nffa_ 3 RLTG-KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE---EGKAMAAEL---ADAARYVHLDVTQPAQWKAAVDTAV 75 (244)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHHT---GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH---HHHHHHHHh---hCcceEEEeecCCHHHHHHHHHHHH
Confidence 4667 99999999999999999999999999999987543 333333333 35788999999999999888766
Q ss_pred ---CCCcEEEEcCcccCccCCc----CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|++|||||+....... ++.+..+++|+.+ ++.+++.|++.+.++||++||...+....
T Consensus 76 ~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~-------- 147 (244)
T d1nffa_ 76 TAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTV-------- 147 (244)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT--------
T ss_pred HHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccccccc--------
Confidence 6899999999987654433 3345578889998 45566777777778999999977653322
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
...+|+.||++.+.+++.++.| +||+++.|.||.|-.|.... .....
T Consensus 148 ---~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~-----------------------~~~~~---- 197 (244)
T d1nffa_ 148 ---ACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDW-----------------------VPEDI---- 197 (244)
T ss_dssp ---TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTT-----------------------SCTTC----
T ss_pred ---cccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhh-----------------------hhHHH----
Confidence 2678999999999999999988 78999999999987653210 00000
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
.......+...+|+|+++++++.... --.++++.+.+|..
T Consensus 198 ---------~~~pl~R~~~p~diA~~v~fL~s~~s~~itG~~i~vDGG~~ 238 (244)
T d1nffa_ 198 ---------FQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTV 238 (244)
T ss_dssp ---------SCCSSSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ---------HhccccCCCCHHHHHHHHHHHhChhhCCCcCCEEEECCCee
Confidence 01112246889999999999886432 23568999977754
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=2.8e-27 Score=213.23 Aligned_cols=228 Identities=16% Similarity=0.129 Sum_probs=162.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
++| |++|||||+++||+++|+.|+++|++|++++|+... .+..++. +..++++|++|++++++++++
T Consensus 3 l~G-K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~----~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~ 72 (248)
T d2d1ya1 3 FAG-KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG----KEVAEAI-----GGAFFQVDLEDERERVRFVEEAAY 72 (248)
T ss_dssp TTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH----HHHHHHH-----TCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHc-----CCeEEEEeCCCHHHHHHHHHHHHH
Confidence 567 999999999999999999999999999999975432 2233332 456789999999999888766
Q ss_pred --CCCcEEEEcCcccCccCCc----CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+..+.... ++.+..+++|+.+ ++.+++.|++++.++||++||...+...
T Consensus 73 ~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~---------- 142 (248)
T d2d1ya1 73 ALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAE---------- 142 (248)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBC----------
T ss_pred hcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccccc----------
Confidence 6899999999987654432 3344578899988 5567777777778899999997765322
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
....+|+.||++.+.+++.++.| +||+++.|.||.|-.|......... .-.........+
T Consensus 143 -~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~---------~~~~~~~~~~~~------- 205 (248)
T d2d1ya1 143 -QENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALS---------PDPERTRRDWED------- 205 (248)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC-----------------CHHHHT-------
T ss_pred -cccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcC---------CCHHHHHHHHHh-------
Confidence 23678999999999999999988 6899999999998764200000000 000001111111
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCccc
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRS 340 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s 340 (413)
......+...+|+|+++++++.... --.|+++.+.+|-+.+
T Consensus 206 ---------~~pl~R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~tas 247 (248)
T d2d1ya1 206 ---------LHALRRLGKPEEVAEAVLFLASEKASFITGAILPVDGGMTAS 247 (248)
T ss_dssp ---------TSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGB
T ss_pred ---------cCCCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEcCcCcccc
Confidence 1112346789999999999886432 2356899998776544
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.95 E-value=2e-28 Score=227.04 Aligned_cols=239 Identities=14% Similarity=0.172 Sum_probs=174.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhh--hhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAV--KVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|||||||||||++++++|+++|++|++++|......... ..+..+. ..+++++.+|+.+...+.+.+ .+.+.
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~--~~~~~ 79 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK--ASGANIVHGSIDDHASLVEAV--KNVDV 79 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH--TTTCEEECCCTTCHHHHHHHH--HTCSE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhc--cCCcEEEEeecccchhhhhhh--hhcee
Confidence 88999999999999999999999999999998766543322 2222222 257899999999999999988 57899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
+||+++... ..++.+++++++..+..++++.||...... +.....+...+...+...+
T Consensus 80 vi~~~~~~~---------------~~~~~~~~~a~~~~~~~~~~~~s~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 137 (307)
T d1qyca_ 80 VISTVGSLQ---------------IESQVNIIKAIKEVGTVKRFFPSEFGNDVD-------NVHAVEPAKSVFEVKAKVR 137 (307)
T ss_dssp EEECCCGGG---------------SGGGHHHHHHHHHHCCCSEEECSCCSSCTT-------SCCCCTTHHHHHHHHHHHH
T ss_pred eeecccccc---------------cchhhHHHHHHHHhccccceeeeccccccc-------ccccccccccccccccccc
Confidence 999997542 234556778888888888898888543321 1222223334555555555
Q ss_pred HHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeeccc
Q 015080 229 DIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308 (413)
Q Consensus 229 ~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~ 308 (413)
.++. +.+++++++||+.+||+..... .. +.....+... +.+.+ .+++.++|+|
T Consensus 138 ~~~~----~~~~~~~i~r~~~v~g~~~~~~---------------~~-~~~~~~~~~~-~~~~~------~~~~~~~~i~ 190 (307)
T d1qyca_ 138 RAIE----AEGIPYTYVSSNCFAGYFLRSL---------------AQ-AGLTAPPRDK-VVILG------DGNARVVFVK 190 (307)
T ss_dssp HHHH----HHTCCBEEEECCEEHHHHTTTT---------------TC-TTCSSCCSSE-EEEET------TSCCEEEEEC
T ss_pred chhh----ccCCCceecccceecCCCccch---------------hh-hhhhhhhccc-ceeee------cccccccCCc
Confidence 5444 4789999999999999753211 10 1111222222 55555 7889999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecC
Q 015080 309 VNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEP 362 (413)
Q Consensus 309 v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~ 362 (413)
++|+|++++.++..+.......|++++++.+|+.|+++.+.+.+|.+.++..+|
T Consensus 191 v~Dva~~~~~~l~~~~~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~~~ 244 (307)
T d1qyca_ 191 EEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 244 (307)
T ss_dssp HHHHHHHHHTTSSCGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred HHHHHHHHHHHhcChhhcCceeEEeCCCCccCHHHHHHHHHHHHCCCCcEEECC
Confidence 999999999999876554434677788899999999999999999998877655
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.95 E-value=5.8e-27 Score=212.74 Aligned_cols=230 Identities=11% Similarity=0.035 Sum_probs=166.8
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC-CCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR-GNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
++++ |++|||||+++||.++|++|+++|++|++++|+.. ..+++.+.+++ .+.++.++++|++|++++++++++
T Consensus 4 dL~g-K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~---~g~~~~~~~~Dvt~~~~v~~~~~~~ 79 (261)
T d1geea_ 4 DLEG-KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKK---VGGEAIAVKGDVTVESDVINLVQSA 79 (261)
T ss_dssp GGTT-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---TTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 5778 99999999999999999999999999999987542 12223333333 356789999999999999888865
Q ss_pred ----CCCcEEEEcCcccCccCC----cCChHHHHHHHHHH----HHHHHHHHHHcCC-CEEEEeccceecCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSN----TLVVLESMARHGV-DTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~----~~~ll~~~~~~~~-~~iV~~SS~~~~~~~~~~~~~e 210 (413)
.++|++|||||+..+... .++.+..+++|+.+ ++.+++.|++++. ++||++||.+.....
T Consensus 80 ~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~------- 152 (261)
T d1geea_ 80 IKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPW------- 152 (261)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC-------
T ss_pred HHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccC-------
Confidence 689999999998765442 23345578889888 5566777777764 469999997764322
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
....+|+.||++.+.+++.++.+ +||++++|.||.|..|..... ...+..........|
T Consensus 153 ----~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~p- 214 (261)
T d1geea_ 153 ----PLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEK-------------FADPEQRADVESMIP- 214 (261)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHH-------------HHSHHHHHHHHTTCT-
T ss_pred ----ccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhh-------------cCCHHHHHHHHhcCC-
Confidence 22678999999999999999988 689999999999976531000 001112222222211
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
...+...+|+|+++++++.... --.++++.+.+|.++
T Consensus 215 ---------------l~R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~sl 252 (261)
T d1geea_ 215 ---------------MGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGMTL 252 (261)
T ss_dssp ---------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred ---------------CCCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCeeC
Confidence 1246788999999999886433 235689999887654
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.95 E-value=3.4e-27 Score=213.14 Aligned_cols=225 Identities=16% Similarity=0.091 Sum_probs=164.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |++|||||+++||+++|++|+++|++|++++|+. +++.+..+++ +.++.++++|++|++++++++++
T Consensus 2 dL~g-K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~---~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~ 74 (254)
T d1hdca_ 2 DLSG-KTVIITGGARGLGAEAARQAVAAGARVVLADVLD---EEGAATAREL---GDAARYQHLDVTIEEDWQRVVAYAR 74 (254)
T ss_dssp CCCC-SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH---HHHHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHHh---CCceEEEEcccCCHHHHHHHHHHHH
Confidence 4678 9999999999999999999999999999998754 3444444444 35789999999999999988866
Q ss_pred ---CCCcEEEEcCcccCccCCc----CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|++|||||+....... ++.+..+++|+.+ ++.+++.|++++.++||++||...+....
T Consensus 75 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~~-------- 146 (254)
T d1hdca_ 75 EEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLA-------- 146 (254)
T ss_dssp HHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT--------
T ss_pred HHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhccccc--------
Confidence 6899999999987654422 3344578889988 55667777777888999999977653322
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
...+|+.||++.+.+++.++.| +||++++|.||.|..+. .. ...........
T Consensus 147 ---~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~-------------------~~---~~~~~~~~~~~ 201 (254)
T d1hdca_ 147 ---LTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM-------------------TA---ETGIRQGEGNY 201 (254)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH-------------------HH---HHTCCCSTTSC
T ss_pred ---chhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCcc-------------------ch---hcCHHHHHHHH
Confidence 3678999999999999999988 68999999999987531 11 11100000000
Q ss_pred EecccccCCCCceeeec-ccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 290 VKGTDYSTADGTCVRDY-IDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~-i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
.......+ ...+|+|+++++++.... --.++++.+.+|.+.
T Consensus 202 ---------~~~pl~R~g~~PedvA~~v~fL~S~~a~~itG~~i~vDGG~t~ 244 (254)
T d1hdca_ 202 ---------PNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGGWTT 244 (254)
T ss_dssp ---------TTSTTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTT
T ss_pred ---------hCCCCCCCCCCHHHHHHHHHHHhchhhCCCCCceEEeCCCccC
Confidence 01111123 357999999999886432 235689999877543
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.95 E-value=2.5e-27 Score=215.07 Aligned_cols=229 Identities=10% Similarity=-0.011 Sum_probs=153.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |++|||||+++||.++|+.|+++|++|++++|+..+.+++.+.+.+ .+.++.++.+|++|++++++++++
T Consensus 5 ~Lkg-K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (259)
T d1xq1a_ 5 SLKA-KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK---KGFQVTGSVCDASLRPEREKLMQTVS 80 (259)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCceEEEeccCCCHHHHHHHHHHHH
Confidence 4567 9999999999999999999999999999998765444444444433 346799999999999998887754
Q ss_pred ----CCCcEEEEcCcccCccCC----cCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
..+|++|||||+...... .++.+..+++|+.+ ++.+++.|++.+.++||++||.......
T Consensus 81 ~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~-------- 152 (259)
T d1xq1a_ 81 SMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSA-------- 152 (259)
T ss_dssp HHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----------------
T ss_pred HHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccccccc--------
Confidence 469999999998765443 23445578899998 5566777788888899999997754322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
....+|+.||++.+.+++.++.| +||++++|.||.|-.|.... .+.+......... +
T Consensus 153 ---~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~--------------~~~~~~~~~~~~~---~ 212 (259)
T d1xq1a_ 153 ---SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEA--------------VYDDEFKKVVISR---K 212 (259)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-------------------------------------
T ss_pred ---cccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhh--------------hchHHHHHHHHhC---C
Confidence 23678999999999999999988 78999999999997764211 0111111111111 1
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
....+...+|+|+++++++.... --.|+++.+.+|.++
T Consensus 213 -------------pl~R~~~pedvA~~v~fL~S~~s~~iTG~~i~vDGG~s~ 251 (259)
T d1xq1a_ 213 -------------PLGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGGLTV 251 (259)
T ss_dssp ------------------CCGGGGHHHHHHHTSGGGTTCCSCEEECCCCEEE
T ss_pred -------------CCCCCcCHHHHHHHHHHHhCchhcCCcCcEEEeCCCEEC
Confidence 12245678999999999886432 234578888777544
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=3.9e-27 Score=212.76 Aligned_cols=231 Identities=15% Similarity=0.052 Sum_probs=167.0
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |++|||||+++||+++|+.|+++|++|++++|+....+++.+.+.+.. +.++.++.+|++|++++++++++
T Consensus 2 ~l~g-K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (251)
T d1vl8a_ 2 DLRG-RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY--GVETMAFRCDVSNYEEVKKLLEAVK 78 (251)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--CCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 3567 999999999999999999999999999999976554444444443322 35788999999999999888866
Q ss_pred ---CCCcEEEEcCcccCccCC----cCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
+++|+||||||+...... .++.+..+++|+.+ ++.+++.|++++.++||++||......
T Consensus 79 ~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~---------- 148 (251)
T d1vl8a_ 79 EKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV---------- 148 (251)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC----------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccc----------
Confidence 689999999998655442 33445578889988 556677777777889999999654211
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
+.....+|+.||++.+.+++.++.| +||++++|.||.|-.+..... .--+...+......|
T Consensus 149 ~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~-------------~~~~~~~~~~~~~~p--- 212 (251)
T d1vl8a_ 149 TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAV-------------FSDPEKLDYMLKRIP--- 212 (251)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHH-------------HTCHHHHHHHHHTCT---
T ss_pred cCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhc-------------cCCHHHHHHHHhcCC---
Confidence 1122568999999999999999988 689999999999977642100 000122222222222
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...+...+|+|+++++++.... --.|+++.+.+|.+
T Consensus 213 -------------l~R~~~pedvA~~v~fL~S~~a~~itG~~i~vDGG~t 249 (251)
T d1vl8a_ 213 -------------LGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGWT 249 (251)
T ss_dssp -------------TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred -------------CCCCCCHHHHHHHHHHHhCchhCCCcCcEEEeCcCee
Confidence 1235678999999999886433 23567999977653
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.95 E-value=2.7e-27 Score=215.32 Aligned_cols=238 Identities=14% Similarity=0.018 Sum_probs=163.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC-CCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR-GNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
+++ |++|||||+++||+++|++|+++|++|++++|+.. ..+++.+.+.+.. +.++.++.+|++|++++++++++
T Consensus 2 L~g-K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (260)
T d1x1ta1 2 LKG-KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH--GVKVLYDGADLSKGEAVRGLVDNAV 78 (260)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH--TSCEEEECCCTTSHHHHHHHHHHHH
T ss_pred CCc-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHH
Confidence 457 99999999999999999999999999999987432 2223333333222 35789999999999999988866
Q ss_pred ---CCCcEEEEcCcccCccCCc----CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
+++|+||||||+....... ++.+..+++|+.+ ++.+++.|++++.++||++||.+.....
T Consensus 79 ~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~--------- 149 (260)
T d1x1ta1 79 RQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVAS--------- 149 (260)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---------
T ss_pred HHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceecc---------
Confidence 6899999999987654432 3345578889888 5667888888888899999997765332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
....+|+.||++.+.+++.++.| +||+++.|.||.|-.|.............. ..........+...
T Consensus 150 --~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----- 219 (260)
T d1x1ta1 150 --ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNG---VDQETAARELLSEK----- 219 (260)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC---------------------------CHHHH-----
T ss_pred --CCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcC---CChHHHHHHHHHhc-----
Confidence 23678999999999999999988 789999999999977642211000000000 00000000000000
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~ 337 (413)
.....+...+|+|+++++++... .--.|+++.+.+|.
T Consensus 220 -----------~Pl~R~g~pediA~~v~fL~S~~a~~itG~~i~vDGG~ 257 (260)
T d1x1ta1 220 -----------QPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGW 257 (260)
T ss_dssp -----------CTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred -----------CCCCCCcCHHHHHHHHHHHhChhhCCCcCCEEEECcch
Confidence 11224678999999999988643 22356799997764
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.95 E-value=2e-27 Score=215.54 Aligned_cols=236 Identities=19% Similarity=0.116 Sum_probs=165.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |++|||||+++||+++|+.|+++|++|++++|+. +.+.+..+++ +.++.++.+|++|++++++++++
T Consensus 2 ~L~g-K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~---~~l~~~~~~~---~~~~~~~~~Dvt~~~~v~~~~~~~~ 74 (256)
T d1k2wa_ 2 RLDG-KTALITGSARGIGRAFAEAYVREGARVAIADINL---EAARATAAEI---GPAACAIALDVTDQASIDRCVAELL 74 (256)
T ss_dssp TTTT-EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH---HHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHHh---CCceEEEEeeCCCHHHHHHHHHHHH
Confidence 4678 9999999999999999999999999999998753 3444444454 45789999999999999988876
Q ss_pred ---CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHH----HHHHHHHc-CCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLV----VLESMARH-GVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~----ll~~~~~~-~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
+++|++|||||+...... .++.+..+++|+.++.. +++.+.+. ..++||++||.+.+-..
T Consensus 75 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~-------- 146 (256)
T d1k2wa_ 75 DRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGE-------- 146 (256)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC--------
T ss_pred HHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcccc--------
Confidence 689999999998655442 23345578899988544 45544444 46799999997765322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc-
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG- 287 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 287 (413)
....+|+.||++.+.+++.++.| +||+++.|.||.+-.|... .+.....+........
T Consensus 147 ---~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~---------------~~~~~~~~~~~~~~~~~ 208 (256)
T d1k2wa_ 147 ---ALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWD---------------GVDAKFADYENLPRGEK 208 (256)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHH---------------HHHHHHHHHHTCCTTHH
T ss_pred ---ccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhh---------------hhhhhhhhhccCChHHH
Confidence 23678999999999999999988 6899999999998876311 1111111100000000
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCccc
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRS 340 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s 340 (413)
..... .......+...+|+|+++++++.... --.|+++.+.+|..+|
T Consensus 209 ~~~~~------~~~PlgR~~~p~evA~~v~fL~S~~a~~iTG~~i~vDGG~~ms 256 (256)
T d1k2wa_ 209 KRQVG------AAVPFGRMGRAEDLTGMAIFLATPEADYIVAQTYNVDGGNWMS 256 (256)
T ss_dssp HHHHH------HHSTTSSCBCHHHHHHHHHHTTSGGGTTCCSCEEEESTTSSCC
T ss_pred HHHHH------hcCCCCCCcCHHHHHHHHHHHhCchhCCccCceEEECcchhhC
Confidence 00000 00011246788999999999876432 2356899998776553
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.4e-27 Score=213.78 Aligned_cols=229 Identities=18% Similarity=0.092 Sum_probs=161.8
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
+++| |++|||||+++||.++|+.|+++|++|++++|+. +.+.+..+++ .++.++.+|++|++++++++++
T Consensus 3 rl~G-K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~---~~~~~~~~~~----~~~~~~~~Dvs~~~~v~~~~~~~~ 74 (250)
T d1ydea1 3 RYAG-KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE---SGGRALEQEL----PGAVFILCDVTQEDDVKTLVSETI 74 (250)
T ss_dssp TTTT-CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH---HHHHHHHHHC----TTEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHhc----CCCeEEEccCCCHHHHHHHHHHHH
Confidence 4678 9999999999999999999999999999998743 2222222222 5688999999999999988866
Q ss_pred ---CCCcEEEEcCcccCcc-CC----cCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVG-ES----TLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~-~~----~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|+||||||+.... .. .++.+..+++|+.+ ++.+++.|++.+ ++||++||........
T Consensus 75 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G~Ii~isS~~~~~~~~------- 146 (250)
T d1ydea1 75 RRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ-GNVINISSLVGAIGQA------- 146 (250)
T ss_dssp HHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCHHHHHCCT-------
T ss_pred HhcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC-CCCccccccccccccc-------
Confidence 6899999999975432 22 23345578899998 555667777665 7999999977653222
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
...+|+.+|++.+.+++.++.| +||+++.|.||.|-.|.........+ . ....+.......|
T Consensus 147 ----~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~--------~-~~~~~~~~~~~~p-- 211 (250)
T d1ydea1 147 ----QAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMP--------D-PRASIREGMLAQP-- 211 (250)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSS--------S-HHHHHHHHHHTST--
T ss_pred ----CcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCC--------C-HHHHHHHHHhcCC--
Confidence 2678999999999999999988 68999999999986542100000000 0 0011111111111
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGR 339 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~ 339 (413)
...+...+|+|+++++++....--.++++.+.+|.++
T Consensus 212 --------------l~R~g~p~eva~~v~fL~Sda~~itG~~i~vDGG~~l 248 (250)
T d1ydea1 212 --------------LGRMGQPAEVGAAAVFLASEANFCTGIELLVTGGAEL 248 (250)
T ss_dssp --------------TSSCBCHHHHHHHHHHHHHHCTTCCSCEEEESTTTTS
T ss_pred --------------CCCCCCHHHHHHHHHHHhCccCCCcCCeEEECCCccc
Confidence 1246789999999999886433335689999777543
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.7e-27 Score=211.87 Aligned_cols=206 Identities=13% Similarity=0.069 Sum_probs=158.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|||||||||||++++++|+++|. +|++++|...+..... ...+....+|+.+.+++.+++ .++|+
T Consensus 15 k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~---------~~~i~~~~~D~~~~~~~~~~~--~~~d~ 83 (232)
T d2bkaa1 15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA---------YKNVNQEVVDFEKLDDYASAF--QGHDV 83 (232)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG---------GGGCEEEECCGGGGGGGGGGG--SSCSE
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc---------cceeeeeeecccccccccccc--ccccc
Confidence 8899999999999999999999995 8999998654432211 146788889999999888888 78999
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
+||+||.... .......+++|+.++.++++++.+.++++||++||..++.. +.+.|+.+|..+|
T Consensus 84 vi~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~~-------------~~~~Y~~~K~~~E 147 (232)
T d2bkaa1 84 GFCCLGTTRG---KAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS-------------SNFLYLQVKGEVE 147 (232)
T ss_dssp EEECCCCCHH---HHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT-------------CSSHHHHHHHHHH
T ss_pred cccccccccc---ccchhhhhhhcccccceeeecccccCccccccCCccccccC-------------ccchhHHHHHHhh
Confidence 9999986422 22355678899999999999999999999999999877532 2467999999999
Q ss_pred HHHHHHHhhCCC-cEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecc
Q 015080 229 DIILDFSKNSDM-AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307 (413)
Q Consensus 229 ~~~~~~~~~~gi-~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i 307 (413)
..+.+ .++ ++++|||+.+||+.... .+...+........+ ........|
T Consensus 148 ~~l~~----~~~~~~~IlRP~~i~G~~~~~--------------~~~~~~~~~~~~~~~------------~~~~~~~~I 197 (232)
T d2bkaa1 148 AKVEE----LKFDRYSVFRPGVLLCDRQES--------------RPGEWLVRKFFGSLP------------DSWASGHSV 197 (232)
T ss_dssp HHHHT----TCCSEEEEEECCEEECTTGGG--------------SHHHHHHHHHHCSCC------------TTGGGGTEE
T ss_pred hcccc----ccccceEEecCceeecCCCcC--------------cHHHHHHHHHhhccC------------CcccCCCeE
Confidence 98866 565 48999999999986321 333444444443322 333334569
Q ss_pred cHHHHHHHHHHHHHhcCCCCccEEEecC
Q 015080 308 DVNDLVDAHVKALERAQPKKVGIYNVGT 335 (413)
Q Consensus 308 ~v~Dva~a~~~~~~~~~~~~~~~yni~~ 335 (413)
+++|+|++++.++..+... +.+.+.+
T Consensus 198 ~~~dvA~a~i~~~~~~~~~--~~~i~~~ 223 (232)
T d2bkaa1 198 PVVTVVRAMLNNVVRPRDK--QMELLEN 223 (232)
T ss_dssp EHHHHHHHHHHHHTSCCCS--SEEEEEH
T ss_pred EHHHHHHHHHHHHhcCccC--CeEEEcH
Confidence 9999999999998876654 5777753
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.95 E-value=8.6e-27 Score=211.55 Aligned_cols=232 Identities=13% Similarity=0.038 Sum_probs=167.1
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |++|||||+++||+++|+.|+++|++|++++|+..+.+++.+.+. ..+..+.++.+|++|++++++++++
T Consensus 5 ~L~G-K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~---~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (259)
T d2ae2a_ 5 NLEG-CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWR---SKGFKVEASVCDLSSRSERQELMNTVA 80 (259)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCCceEEEeeCCCHHHHHHHHHHHH
Confidence 5778 999999999999999999999999999999875444444444443 3356789999999999998877754
Q ss_pred ---C-CCcEEEEcCcccCccCC----cCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---N-AFDAVMHFAAVAYVGES----TLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~-~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
. ++|++|||||+...... .++.+..+++|+.+ ++.+++.+++.+.++||++||.......
T Consensus 81 ~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~-------- 152 (259)
T d2ae2a_ 81 NHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAV-------- 152 (259)
T ss_dssp HHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCC--------
T ss_pred HHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccccccc--------
Confidence 3 69999999998655442 23345578899988 4556777788778899999997764322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
....+|+.||++.+.+++.++.| +||++++|.||.|-.+...... .. .-............|
T Consensus 153 ---~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~---~~-------~~~~~~~~~~~~~~p-- 217 (259)
T d2ae2a_ 153 ---PYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTI---QD-------PEQKENLNKLIDRCA-- 217 (259)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHT---TS-------HHHHHHHHHHHHTST--
T ss_pred ---ccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhh---hc-------hhhHHHHHHHHhcCC--
Confidence 23678999999999999999988 6899999999998764210000 00 001112222222211
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...+...+|+|+++++++.... --.|+++.+.+|-.
T Consensus 218 --------------l~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG~~ 254 (259)
T d2ae2a_ 218 --------------LRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGGLM 254 (259)
T ss_dssp --------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred --------------CCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECCCeE
Confidence 1246788999999999887433 23557998977643
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.95 E-value=8.7e-27 Score=211.75 Aligned_cols=240 Identities=15% Similarity=0.101 Sum_probs=165.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |++|||||+++||.++|+.|+++|++|++++|+....+++.+.++ ..+.++.++.||++|+++++++++.
T Consensus 2 rL~g-K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~---~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (260)
T d1zema1 2 KFNG-KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVR---EKGVEARSYVCDVTSEEAVIGTVDSVV 77 (260)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---TTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4668 999999999999999999999999999999976544444444443 3456899999999999999888866
Q ss_pred ---CCCcEEEEcCcccCc-cCC----cCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYV-GES----TLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~-~~~----~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|++|||||+... ... .++.+..+++|+.+ ++.+++.|++++.++||++||.+.+...+
T Consensus 78 ~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~------- 150 (260)
T d1zema1 78 RDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPP------- 150 (260)
T ss_dssp HHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCT-------
T ss_pred HHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCCc-------
Confidence 689999999997543 222 23344567889888 55677777777888999999977654322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCC-CCcccccccchHHHHHHHHhccccc
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEA-PRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
...+|+.||++.+.+++.++.| +||+++.|.||.|-.+.......+. ................+.+....|
T Consensus 151 ----~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P- 225 (260)
T d1zema1 151 ----NMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVP- 225 (260)
T ss_dssp ----TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTST-
T ss_pred ----chHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcCC-
Confidence 2678999999999999999988 6899999999998765200000000 000000000111122222222211
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
...+...+|+|+++++++.... --.|+++.+.+|
T Consensus 226 ---------------l~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG 260 (260)
T d1zema1 226 ---------------MRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 260 (260)
T ss_dssp ---------------TSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESCC
T ss_pred ---------------CCCCcCHHHHHHHHHHHhCchhcCccCCeEEeCCC
Confidence 1235678999999999887433 234578887553
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.95 E-value=5.9e-27 Score=210.63 Aligned_cols=223 Identities=13% Similarity=0.051 Sum_probs=164.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC-CCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----C
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL-SRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 144 (413)
+.||||||+++||+++|++|+++|++|++.++. .+..+++.+.+++. +.++.++++|++|++++++++++ +
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 78 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY---GGQAITFGGDVSKEADVEAMMKTAIDAWG 78 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH---TCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc---CCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 589999999999999999999999999887642 22233333444333 56889999999999999888765 6
Q ss_pred CCcEEEEcCcccCccCC----cCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGES----TLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
++|++|||||+...... .++.+..+++|+.+ ++.+++.|++++.++||++||.+.+-... .
T Consensus 79 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~-----------~ 147 (244)
T d1edoa_ 79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNI-----------G 147 (244)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT-----------T
T ss_pred CCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCCC-----------C
Confidence 89999999998755432 33455578889988 66677888888888999999977653222 2
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
..+|+.||++.+.+++.++.| +||++++|.||.+-.+... .+.+...+......|
T Consensus 148 ~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~---------------~~~~~~~~~~~~~~p------- 205 (244)
T d1edoa_ 148 QANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTA---------------KLGEDMEKKILGTIP------- 205 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHH---------------TTCHHHHHHHHTSCT-------
T ss_pred CHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHH---------------HhhHHHHHHHHhcCC-------
Confidence 678999999999999999988 6999999999998754211 122233333333222
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhc--CCCCccEEEecCCCc
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERA--QPKKVGIYNVGTGKG 338 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~--~~~~~~~yni~~~~~ 338 (413)
...+...+|+|+++++++..+ .--.|+++.+.+|-+
T Consensus 206 ---------l~R~~~p~dvA~~v~fLa~S~~a~~itG~~i~vdGG~s 243 (244)
T d1edoa_ 206 ---------LGRTGQPENVAGLVEFLALSPAASYITGQAFTIDGGIA 243 (244)
T ss_dssp ---------TCSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTTTT
T ss_pred ---------CCCCcCHHHHHHHHHHHHCCchhcCCcCCeEEeCCCee
Confidence 124678899999999986432 223457898877643
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.95 E-value=5.5e-27 Score=211.87 Aligned_cols=226 Identities=16% Similarity=0.149 Sum_probs=162.1
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |++|||||+++||+++|+.|+++|++|++++|+.. .+.+..+++. .+.++.++.+|++|++++++++++
T Consensus 3 rL~g-K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~---~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (251)
T d1zk4a1 3 RLDG-KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD---VGEKAAKSVG-TPDQIQFFQHDSSDEDGWTKLFDATE 77 (251)
T ss_dssp TTTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHHHC-CTTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH---HHHHHHHHhC-CCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4678 99999999999999999999999999999987543 3333333332 346899999999999999888766
Q ss_pred ---CCCcEEEEcCcccCccCCc----CChHHHHHHHHHH----HHHHHHHHHHcCC-CEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSN----TLVVLESMARHGV-DTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~-~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
+++|++|||||+....... ++.+..+++|+.+ ++.+++.|++.+. ++||++||...+-..
T Consensus 78 ~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~-------- 149 (251)
T d1zk4a1 78 KAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD-------- 149 (251)
T ss_dssp HHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC--------
T ss_pred HHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccC--------
Confidence 7899999999987654433 3344578899998 4556666666664 489999997764322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh-----CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN-----SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
+...+|+.||++.+.+++.++.+ +||+++.|.||.|-.+.... ..-.. ......
T Consensus 150 ---~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~--------------~~~~~---~~~~~~- 208 (251)
T d1zk4a1 150 ---PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDD--------------LPGAE---EAMSQR- 208 (251)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHT--------------STTHH---HHHTST-
T ss_pred ---CCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHh--------------cCCHH---HHHHHH-
Confidence 22678999999999999988764 58999999999987642110 00011 111111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
.......+...+|+|+++++++.... --.|+++.+.+|.
T Consensus 209 ------------~~~pl~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 248 (251)
T d1zk4a1 209 ------------TKTPMGHIGEPNDIAYICVYLASNESKFATGSEFVVDGGY 248 (251)
T ss_dssp ------------TTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ------------hCCCCCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECccc
Confidence 11112246789999999999886433 2356799997764
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.95 E-value=2.8e-26 Score=209.43 Aligned_cols=235 Identities=14% Similarity=0.137 Sum_probs=168.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |++|||||+++||.++|++|+++|++|++++|+.. .+.+..+++.. ...+.++.||++|++++++++++
T Consensus 3 rL~g-KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~---~~~~~~~~l~~-~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (268)
T d2bgka1 3 RLQD-KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD---HGQKVCNNIGS-PDVISFVHCDVTKDEDVRNLVDTTI 77 (268)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH---HHHHHHHHhcC-CCceEEEEccCCCHHHHHHHHHHHH
Confidence 4678 99999999999999999999999999999987543 34444444433 35688999999999999988865
Q ss_pred ---CCCcEEEEcCcccCccC--C----cCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE--S----TLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~--~----~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
.++|++|||||+..... . .++.+..+++|+.+ ++.+++.|++++.+++|++||...+.....
T Consensus 78 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~~----- 152 (268)
T d2bgka1 78 AKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEG----- 152 (268)
T ss_dssp HHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTT-----
T ss_pred HHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccccccccccc-----
Confidence 68999999999754321 1 22345578889888 556677777777789999999765422111
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
....|+.||++.+.+++.++.+ +||+++.|.||.|-.|.....++. -.............
T Consensus 153 -----~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~-----------~~~~~~~~~~~~~~- 215 (268)
T d2bgka1 153 -----VSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGV-----------DSSRVEELAHQAAN- 215 (268)
T ss_dssp -----SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSC-----------CHHHHHHHHHHTCS-
T ss_pred -----cccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcC-----------CHHHHHHHHHhccc-
Confidence 1347999999999999999988 689999999999988754322111 01111111111111
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCcccH
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKGRSV 341 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~~s~ 341 (413)
....+...+|+|+++++++... .--.|+++.+.+|.+.+.
T Consensus 216 --------------~~gr~~~pedvA~~v~fL~S~~s~~itGq~i~VDGG~t~~~ 256 (268)
T d2bgka1 216 --------------LKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYTRTN 256 (268)
T ss_dssp --------------SCSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCC
T ss_pred --------------cCCCCcCHHHHHHHHHHHhChhhCCccCceEEECcCcccCC
Confidence 1123678899999999988643 233568999988865543
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.95 E-value=7.7e-27 Score=211.57 Aligned_cols=234 Identities=16% Similarity=0.089 Sum_probs=162.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 145 (413)
|++|||||+++||+++|++|+++|++|++++|+....+++.+.+++. +.++.+++||++|++++++++++ ++
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA---GGHAVAVKVDVSDRDQVFAAVEQARKTLGG 78 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 77899999999999999999999999999998655544455555443 56799999999999999988766 68
Q ss_pred CcEEEEcCcccCccCC----cCChHHHHHHHHHHHH----HHHHHHHHcC-CCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGES----TLDPLKYYHNITSNTL----VVLESMARHG-VDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~----~ll~~~~~~~-~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
+|+||||||+...... .++.+..+++|+.++. .+++.+.+.+ .++||++||.+.+...+ .
T Consensus 79 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~-----------~ 147 (255)
T d1gega_ 79 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNP-----------E 147 (255)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT-----------T
T ss_pred ccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccCc-----------c
Confidence 9999999998655442 2334557889999854 4555555554 56899999977653222 2
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
..+|+.||++.+.+++.++.| +||+++.|.||.|-.|. ...+......... ......
T Consensus 148 ~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~-------------------~~~~~~~~~~~~~-~~~~~~ 207 (255)
T d1gega_ 148 LAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPM-------------------WAEIDRQVSEAAG-KPLGYG 207 (255)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHH-------------------HHHHHHHHHHHHT-CCTTHH
T ss_pred cccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChH-------------------HhhhhhhhHhhhc-ccchhH
Confidence 678999999999999999988 68999999999986542 1111111110000 000000
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...+.+......+...+|+|+++++++.... --.|+++.+.+|-.
T Consensus 208 ~~~~~~~~pl~R~~~peevA~~v~fL~S~~a~~itG~~i~vDGG~~ 253 (255)
T d1gega_ 208 TAEFAKRITLGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGGMV 253 (255)
T ss_dssp HHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCccCcEEEecCCEE
Confidence 0000011112346789999999999886433 23567999977743
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.2e-26 Score=208.61 Aligned_cols=224 Identities=17% Similarity=0.135 Sum_probs=163.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-C
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-N 144 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~ 144 (413)
.++| |++|||||+++||+++|+.|+++|++|++++|+. +++.+..+++ .++..+.+|++|++++++++++ .
T Consensus 4 ~L~G-K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~---~~l~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~g 75 (244)
T d1pr9a_ 4 FLAG-RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ---ADLDSLVREC----PGIEPVCVDLGDWEATERALGSVG 75 (244)
T ss_dssp CCTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH---HHHHHHHHHS----TTCEEEECCTTCHHHHHHHHTTCC
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH---HHHHHHHHhc----CCCeEEEEeCCCHHHHHHHHHHhC
Confidence 5678 9999999999999999999999999999998753 3333333333 4688899999999999999977 6
Q ss_pred CCcEEEEcCcccCccCC----cCChHHHHHHHHHH----HHHHHHHHH-HcCCCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGES----TLDPLKYYHNITSN----TLVVLESMA-RHGVDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~----~~~ll~~~~-~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
++|+||||||+...... .++.+..+++|+.+ ++.+++.+. +.+.++||++||.......+
T Consensus 76 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~----------- 144 (244)
T d1pr9a_ 76 PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVT----------- 144 (244)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT-----------
T ss_pred CceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccccccccccc-----------
Confidence 79999999998765442 33445578888888 455666543 34568999999977653322
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
...+|+.||++.+.+++.++.+ +||+++.|.||.|..+..... .--+.......+..|
T Consensus 145 ~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~p------ 205 (244)
T d1pr9a_ 145 NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQAT-------------WSDPHKAKTMLNRIP------ 205 (244)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTT-------------SCSHHHHHHHHTTCT------
T ss_pred chhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhh-------------ccChHHHHHHHhcCC------
Confidence 2678999999999999999988 689999999999886531110 000112222222222
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...+...+|+|+++++++.... --.|+++.+.+|.
T Consensus 206 ----------l~R~~~peevA~~v~fL~S~~a~~itG~~i~vDGG~ 241 (244)
T d1pr9a_ 206 ----------LGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGF 241 (244)
T ss_dssp ----------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ----------CCCCcCHHHHHHHHHHHhCchhCCcCCcEEEECccH
Confidence 1246789999999999886432 2356789887664
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=5.9e-27 Score=210.40 Aligned_cols=225 Identities=16% Similarity=0.129 Sum_probs=163.2
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-C
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-N 144 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~ 144 (413)
+++| |++|||||+++||+++|++|+++|++|++++|+. +++.+..++. .++.++.+|++|++++++++++ +
T Consensus 2 dl~G-K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~---~~l~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~g 73 (242)
T d1cyda_ 2 NFSG-LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN---SDLVSLAKEC----PGIEPVCVDLGDWDATEKALGGIG 73 (242)
T ss_dssp CCTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH---HHHHHHHHHS----TTCEEEECCTTCHHHHHHHHTTCC
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHhc----CCCeEEEEeCCCHHHHHHHHHHcC
Confidence 5678 9999999999999999999999999999998753 3333333333 4688999999999999999987 6
Q ss_pred CCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHH----HHHHHHHc-CCCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLV----VLESMARH-GVDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~----ll~~~~~~-~~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
++|+||||||+...... .++.+..+++|+.++.. +++.+.+. +.+++|++||...+...+
T Consensus 74 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~----------- 142 (242)
T d1cyda_ 74 PVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFP----------- 142 (242)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT-----------
T ss_pred CCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccCC-----------
Confidence 79999999998665443 23344568889988554 45554443 467999999977654322
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
...+|+.+|++.+.+++.++.| +||++++|.||.+-.+..... .-.+..........|
T Consensus 143 ~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~-------------~~~~~~~~~~~~~~p------ 203 (242)
T d1cyda_ 143 NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKV-------------SADPEFARKLKERHP------ 203 (242)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHH-------------TCCHHHHHHHHHHST------
T ss_pred ccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhh-------------cCCHHHHHHHHhcCC------
Confidence 2678999999999999999988 689999999999876421000 000122222222222
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...+...+|+|+++++++.... --.|+++.+.+|..
T Consensus 204 ----------l~R~~~peeva~~v~fL~S~~s~~itG~~i~vDGG~~ 240 (242)
T d1cyda_ 204 ----------LRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAGYL 240 (242)
T ss_dssp ----------TSSCBCHHHHHHHHHHHHSGGGTTCCSSEEEESTTGG
T ss_pred ----------CCCCcCHHHHHHHHHHHhCchhcCcCCceEEeCcchh
Confidence 1246788999999999886432 23567999977643
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=2.3e-26 Score=209.61 Aligned_cols=238 Identities=11% Similarity=0.024 Sum_probs=161.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |++|||||+++||+++|++|+++|++|++++|+....+++.+.+.+......++.++.+|++|++++++++++
T Consensus 2 rl~g-KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (264)
T d1spxa_ 2 RFAE-KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL 80 (264)
T ss_dssp TTTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHH
Confidence 3567 9999999999999999999999999999999876655666666665543345799999999999999988866
Q ss_pred ---CCCcEEEEcCcccCccC--------CcCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccc-eecCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE--------STLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTC-ATYGEPEKMP 207 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~--------~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~-~~~~~~~~~~ 207 (413)
.++|++|||||+..+.. ..++.+..+++|+.+ ++.+++.|++.+. .+|+++|+ +.+..
T Consensus 81 ~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g-~iI~~~S~~~~~~~----- 154 (264)
T d1spxa_ 81 GKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKG-EIVNISSIASGLHA----- 154 (264)
T ss_dssp HHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEECCTTSSSSC-----
T ss_pred HHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccC-cceeeeeecccccc-----
Confidence 68999999999754321 123345578889998 5667777777654 56655553 33322
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcc
Q 015080 208 ITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGI 284 (413)
Q Consensus 208 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (413)
.+...+|+.||++.+.+++.++.| +||+++.|.||.|-.+.......+... ..-.........+.
T Consensus 155 ------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~------~~~~~~~~~~~~~~ 222 (264)
T d1spxa_ 155 ------TPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEET------SKKFYSTMATMKEC 222 (264)
T ss_dssp ------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------------HHHHHHHHHH
T ss_pred ------CCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHH------HHHHHHHHHHHHhc
Confidence 222567999999999999999988 689999999999976642211000000 00111111222221
Q ss_pred ccceeEecccccCCCCceeeecccHHHHHHHHHHHHHh--cCCCCccEEEecCCCc
Q 015080 285 IAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALER--AQPKKVGIYNVGTGKG 338 (413)
Q Consensus 285 ~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~--~~~~~~~~yni~~~~~ 338 (413)
.| ...+...+|+|+++++++.. ..--.|+++.+.+|.+
T Consensus 223 ~P----------------l~R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG~s 262 (264)
T d1spxa_ 223 VP----------------AGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSS 262 (264)
T ss_dssp CT----------------TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred CC----------------CCCCcCHHHHHHHHHHHhCCcccCCccCceEEeCCChh
Confidence 11 12357889999999998853 2323568999977754
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.94 E-value=7.3e-27 Score=212.06 Aligned_cols=233 Identities=15% Similarity=0.110 Sum_probs=164.9
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----- 143 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 143 (413)
| |++|||||+++||.++|+.|+++|++|++++|+....+++.+.+++ .+.++.++++|++|++++++++++
T Consensus 2 g-KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~---~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (257)
T d2rhca1 2 S-EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE---AGVEADGRTCDVRSVPEIEALVAAVVERY 77 (257)
T ss_dssp C-CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred C-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeecCCHHHHHHHHHHHHHHh
Confidence 5 8999999999999999999999999999999765444444444443 356799999999999999988766
Q ss_pred CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHH------HHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 144 NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESM------ARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~------~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
.++|+||||||+...... .++.+..+++|+.++..+.+++ .+.+.++||++||...+...+
T Consensus 78 g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~~--------- 148 (257)
T d2rhca1 78 GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVV--------- 148 (257)
T ss_dssp CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCCT---------
T ss_pred CCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccccc---------
Confidence 679999999998655442 3344567889999977766654 345667999999977653322
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
...+|+.||++.+.+++.++.| +||++++|.||.|-.|...... .......+...+...+......|
T Consensus 149 --~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~P---- 218 (257)
T d2rhca1 149 --HAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVR----EHYSDIWEVSTEEAFDRITARVP---- 218 (257)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHH----HHHHHHTTCCHHHHHHHHHTTST----
T ss_pred --cchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHH----hhhhhhcccChHHHHHHHHhcCC----
Confidence 2678999999999999999988 6899999999998654200000 00000000011122222222221
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCC
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTG 336 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~ 336 (413)
...+...+|+|+++++++... ..-.|+++.+.+|
T Consensus 219 ------------lgR~~~pedia~~v~fL~S~~s~~itG~~i~vDGG 253 (257)
T d2rhca1 219 ------------IGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG 253 (257)
T ss_dssp ------------TSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ------------CCCCcCHHHHHHHHHHHhCchhcCCcCceEEECcC
Confidence 124678999999999998643 3335678988765
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.94 E-value=4.7e-26 Score=208.33 Aligned_cols=240 Identities=13% Similarity=0.027 Sum_probs=165.5
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.+++ |++|||||+++||+++|+.|+++|++|++++|+..+.+++.+.+.+......++.++.||++|++++++++++
T Consensus 2 rL~g-K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 80 (272)
T d1xkqa_ 2 RFSN-KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 80 (272)
T ss_dssp TTTT-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence 4668 9999999999999999999999999999999876555556666655433345789999999999999888766
Q ss_pred ---CCCcEEEEcCcccCccCC----cC----ChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES----TL----DPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~----~~----~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~ 208 (413)
.++|++|||||+..+... .+ ..+..+++|+.+ ++.+++.|++.+.+.|+++||.+....
T Consensus 81 ~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~~------ 154 (272)
T d1xkqa_ 81 KQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQA------ 154 (272)
T ss_dssp HHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSC------
T ss_pred HHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccccC------
Confidence 689999999998654321 12 244567889988 555666777665444444454443322
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
.....+|+.||++.+.+++.++.| +||+++.|.||.|-.+...... .++ ..............
T Consensus 155 -----~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~----~~~-----~~~~~~~~~~~~~~ 220 (272)
T d1xkqa_ 155 -----QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMG----MPD-----QASQKFYNFMASHK 220 (272)
T ss_dssp -----CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTT----CCH-----HHHHHHHHHHHHCT
T ss_pred -----CCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccC----Cch-----HHHHHHHHHHHHHh
Confidence 222678999999999999999988 7899999999998765311000 000 11111111111111
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc--CCCCccEEEecCCCcc
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA--QPKKVGIYNVGTGKGR 339 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~--~~~~~~~yni~~~~~~ 339 (413)
..++ ...+...+|+|+++++++..+ .--.|+++.+.+|.++
T Consensus 221 ~~~P-------------lgR~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG~~l 263 (272)
T d1xkqa_ 221 ECIP-------------IGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTSL 263 (272)
T ss_dssp TTCT-------------TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGG
T ss_pred cCCC-------------CCCCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcCHHH
Confidence 1011 224678999999999998532 2235689999887654
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.94 E-value=5.8e-26 Score=207.83 Aligned_cols=239 Identities=15% Similarity=0.050 Sum_probs=169.6
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
++| |++|||||+++||+++|++|+++|++|++++|+..+.+++.+.+.+......++.++.+|++|++++++++++
T Consensus 2 L~g-K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 2 FSG-KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 567 9999999999999999999999999999999866555556666655543345789999999999999888766
Q ss_pred --CCCcEEEEcCcccCccC--C----cCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGE--S----TLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~--~----~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
+++|++|||||...... . .++.+..+++|+.+ ++.+++.|++.+.++|+++||.+.....
T Consensus 81 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~-------- 152 (274)
T d1xhla_ 81 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAH-------- 152 (274)
T ss_dssp HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCC--------
T ss_pred HcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccccC--------
Confidence 68999999999754322 1 12345578889988 5567777777777789988886654322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
....+|+.||++.+.+++.++.+ +||+++.|.||.|-.|...... ... ................+
T Consensus 153 ---~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~----~~~-----~~~~~~~~~~~~~~~~i 220 (274)
T d1xhla_ 153 ---SGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMG----LPE-----TASDKLYSFIGSRKECI 220 (274)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTT----CCH-----HHHHHHHHHHHHCTTTC
T ss_pred ---CCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhc----ccc-----hhhHHHHHHHHHHHcCC
Confidence 22678999999999999999988 6899999999999765211000 000 11111112221111111
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHh--cCCCCccEEEecCCCcc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALER--AQPKKVGIYNVGTGKGR 339 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~--~~~~~~~~yni~~~~~~ 339 (413)
| ...+...+|+|+++++++.. ..--.|+++.+.+|.++
T Consensus 221 P-------------lgR~g~pediA~~v~fL~S~d~s~~itG~~i~vDGG~~l 260 (274)
T d1xhla_ 221 P-------------VGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGSTL 260 (274)
T ss_dssp T-------------TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGG
T ss_pred C-------------CCCCcCHHHHHHHHHHHcCCccccCccCcEEEeCcCHHH
Confidence 1 12467899999999998853 33345689999887653
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.94 E-value=2.6e-26 Score=205.85 Aligned_cols=170 Identities=16% Similarity=0.143 Sum_probs=136.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCE-------EEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYR-------VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~-------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
+.||||||+++||+++|++|+++|++ |++++|+... +.+..+++...+.++.++.+|++|++++++++++
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~---l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~ 78 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAAD---LEKISLECRAEGALTDTITADISDMADVRRLTTH 78 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHH---HHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHH---HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 67999999999999999999999997 7888765433 3333334444456889999999999999888766
Q ss_pred -----CCCcEEEEcCcccCccCCc----CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCC
Q 015080 144 -----NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
+++|+||||||+....... ++.+..+++|+.+ ++.+++.|++++.++||++||.+.+...+
T Consensus 79 ~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~------ 152 (240)
T d2bd0a1 79 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFR------ 152 (240)
T ss_dssp HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT------
T ss_pred HHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCCC------
Confidence 6899999999987654432 3445578899998 66678888888888999999987653322
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
...+|+.||++.+.+++.++.| +||+++.|.||.|-.+.
T Consensus 153 -----~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~ 194 (240)
T d2bd0a1 153 -----HSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPM 194 (240)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTT
T ss_pred -----CChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCch
Confidence 3678999999999999999888 78999999999987653
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.94 E-value=7.9e-26 Score=204.91 Aligned_cols=233 Identities=13% Similarity=0.045 Sum_probs=166.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |+||||||+++||.++|++|+++|++|++++|+..+.+++.+.+++ .+..+.++.+|+++.+++++++++
T Consensus 3 ~L~g-K~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~---~~~~~~~~~~D~s~~~~~~~~~~~~~ 78 (258)
T d1ae1a_ 3 SLKG-TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE---KGLNVEGSVCDLLSRTERDKLMQTVA 78 (258)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCCceEEEeecCCHHHHHHHHHHHH
Confidence 4568 9999999999999999999999999999999865544444444444 356788999999999999887654
Q ss_pred ----CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHH----HHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNT----LVVLESMARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~----~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
..+|+||||||....... .++....+++|+.++ +.+++.+.+.+.+++|++||.+.....+
T Consensus 79 ~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~~~------- 151 (258)
T d1ae1a_ 79 HVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALP------- 151 (258)
T ss_dssp HHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCT-------
T ss_pred HHhCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccccccccccccccccccc-------
Confidence 459999999998655432 234455778888884 4556677777889999999987754322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
...+|+.+|.+.+.+++.++.+ .||++.+|.||.+..+......... .........+....|
T Consensus 152 ----~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~---------~~~~~~~~~~~~~~p-- 216 (258)
T d1ae1a_ 152 ----SVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKN---------PHQKEEIDNFIVKTP-- 216 (258)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC----------------------CHHHHHHHHHHST--
T ss_pred ----cchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhh---------hhhHHHHHHHHhcCC--
Confidence 3678999999999999999988 6899999999999877532211110 011122222222222
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...+...+|+|+++++++.... --.|+.+.+.+|.+
T Consensus 217 --------------lgR~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~s 253 (258)
T d1ae1a_ 217 --------------MGRAGKPQEVSALIAFLCFPAASYITGQIIWADGGFT 253 (258)
T ss_dssp --------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred --------------CCCCcCHHHHHHHHHHHhChhhCCCcCcEEEeCCCee
Confidence 1236899999999999996433 23557898977654
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=5.2e-27 Score=212.55 Aligned_cols=234 Identities=21% Similarity=0.193 Sum_probs=164.7
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
+| |++|||||+++||.++|+.|+++|++|++++|+..+.+++.+.+.+... +.++.++.+|++|++++++++++
T Consensus 2 ~G-KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NG-KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFE-PQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSC-GGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC-CCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 46 9999999999999999999999999999999765554444444443222 35789999999999999988765
Q ss_pred -CCCcEEEEcCcccCccCCcCChHHHHHHHHHH----HHHHHHHHHHcC---CCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 144 -NAFDAVMHFAAVAYVGESTLDPLKYYHNITSN----TLVVLESMARHG---VDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~----~~~ll~~~~~~~---~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
+++|+||||||+... .+.+..+++|+.+ ++.+++.|.+.+ .++||++||.+.+-. ..
T Consensus 80 ~G~iDilVnnAg~~~~----~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~-----------~~ 144 (254)
T d2gdza1 80 FGRLDILVNNAGVNNE----KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP-----------VA 144 (254)
T ss_dssp HSCCCEEEECCCCCCS----SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC-----------CT
T ss_pred cCCcCeeccccccccc----ccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccC-----------CC
Confidence 689999999998643 4577888888887 556677776553 368999999776532 22
Q ss_pred CCChhHHHHHHHHHHHHH--HHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeE
Q 015080 216 PINPYGKAKKMAEDIILD--FSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKV 290 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~--~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 290 (413)
...+|+.||++.+.+++. ++.+ +||++++|.||.|-.+..... .. ....+.. ....+.+... ++
T Consensus 145 ~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~----~~--~~~~~~~-~~~~~~~~~~---~p- 213 (254)
T d2gdza1 145 QQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESI----EK--EENMGQY-IEYKDHIKDM---IK- 213 (254)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGG----GC--HHHHGGG-GGGHHHHHHH---HH-
T ss_pred CccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhc----cc--ccccccc-HHHHHHHHhc---CC-
Confidence 367899999999999985 4544 789999999999865421000 00 0000000 0001111111 11
Q ss_pred ecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCcccHH
Q 015080 291 KGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVK 342 (413)
Q Consensus 291 ~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~~s~~ 342 (413)
...+...+|+|+++++++..+. -.|+++.|.+|..+.++
T Consensus 214 ------------~~r~~~pedvA~~v~fL~s~~~-itG~~i~VdGG~~~~~~ 252 (254)
T d2gdza1 214 ------------YYGILDPPLIANGLITLIEDDA-LNGAIMKITTSKGIHFQ 252 (254)
T ss_dssp ------------HHCCBCHHHHHHHHHHHHHCTT-CSSCEEEEETTTEEEEC
T ss_pred ------------CCCCcCHHHHHHHHHHHHcCCC-CCCCEEEECCCCeeecc
Confidence 1235678999999999998644 46789999888766544
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.1e-26 Score=205.54 Aligned_cols=174 Identities=14% Similarity=0.105 Sum_probs=140.2
Q ss_pred CCCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 65 QHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 65 ~~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+++.| |+||||||+++||+++|++|+++|++|++++|+..+.+++.+.+.+ .+.++.++.||++|+++++++++.
T Consensus 3 ~~l~G-kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~---~~~~~~~~~~Dvs~~~~v~~~~~~i 78 (244)
T d1yb1a_ 3 KSVTG-EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG---LGAKVHTFVVDCSNREDIYSSAKKV 78 (244)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 35778 9999999999999999999999999999999865555555555544 356899999999999999887764
Q ss_pred ----CCCcEEEEcCcccCccCCcC----ChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGESTL----DPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~~~~----~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
+++|++|||||........+ ..+..+++|+.+ ++.+++.|++++.++||++||...+-..
T Consensus 79 ~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~-------- 150 (244)
T d1yb1a_ 79 KAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSV-------- 150 (244)
T ss_dssp HHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCH--------
T ss_pred HHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcCCC--------
Confidence 67999999999876544332 334578899998 5567788888888999999997765322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh------CCCcEEEEeecceecC
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN------SDMAVMILRYFNVIGS 253 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~------~gi~~~~lrp~~v~G~ 253 (413)
....+|+.||++.+.+++.++.| .|+++++|.||.|-.+
T Consensus 151 ---~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~ 195 (244)
T d1yb1a_ 151 ---PFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTG 195 (244)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHC
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCCh
Confidence 22668999999999999999876 4799999999988654
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3e-26 Score=211.77 Aligned_cols=234 Identities=14% Similarity=0.106 Sum_probs=168.5
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcC--CCCceEEEEccCCCHHHHHHHhhc
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFP--EPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
.++| |++|||||+++||.++|++|+++|++|++++|+..+.+++.+.+..... .+.++.++.+|++|++++++++++
T Consensus 9 ~L~g-KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 87 (297)
T d1yxma1 9 LLQG-QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 87 (297)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence 5778 9999999999999999999999999999999876665666666554332 245789999999999999988765
Q ss_pred -----CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHH----HHHHHHHHHcCCCEEEEeccceecCCCCCCCCCC
Q 015080 144 -----NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNT----LVVLESMARHGVDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~----~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
.++|+||||||+...... .++.+..+++|+.++ +.+++.|++.+.++||++||....+
T Consensus 88 ~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~~--------- 158 (297)
T d1yxma1 88 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAG--------- 158 (297)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTTC---------
T ss_pred HHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccccccccccccccccc---------
Confidence 689999999998655433 234455788898884 4566666677778899887744322
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
.+....|+.||++.+.+++.++.+ +||++++|.||.|..+......+ ...+.........
T Consensus 159 ---~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~-----------~~~~~~~~~~~~~--- 221 (297)
T d1yxma1 159 ---FPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYG-----------SWGQSFFEGSFQK--- 221 (297)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSG-----------GGGGGGGTTGGGG---
T ss_pred ---ccccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhcc-----------ccCHHHHHHHHhc---
Confidence 122678999999999999999988 68999999999998764211110 1111111111111
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
+ ....+...+|+|+++++++.... --.|+++.+.+|.++
T Consensus 222 ~-------------plgR~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDGG~sl 261 (297)
T d1yxma1 222 I-------------PAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRSL 261 (297)
T ss_dssp S-------------TTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred C-------------CCCCCcCHHHHHHHHHHHhCchhcCcCCcEEEeCcChhh
Confidence 1 11246678999999999986432 235689999877543
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.94 E-value=4.5e-26 Score=205.96 Aligned_cols=226 Identities=13% Similarity=0.101 Sum_probs=159.7
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |++|||||+++||.++|+.|+++|++|++++|+. +.+.+..+++ +.+..++++|++|+++++++++.
T Consensus 3 rL~g-K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~---~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~ 75 (253)
T d1hxha_ 3 RLQG-KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE---AAGQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQ 75 (253)
T ss_dssp TTTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH---HHHHHHHHHH---CTTEEEECCCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHHh---CCCeEEEEeecCCHHHHHHHHHHHH
Confidence 4678 9999999999999999999999999999998643 3333444444 35788999999999999888766
Q ss_pred ---CCCcEEEEcCcccCccCC----cCChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||+..+... .++.+..+++|+.+ ++.+++.|++.+ ++||++||.+.+-.
T Consensus 76 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-G~Iv~isS~~~~~~---------- 144 (253)
T d1hxha_ 76 RRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLP---------- 144 (253)
T ss_dssp HHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSC----------
T ss_pred HHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-CceecccchhhhcC----------
Confidence 689999999998655432 23345578899888 555666676554 89999999776432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh-----CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccc
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN-----SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG 287 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (413)
.....+|+.||++.+.+++.++.+ ++|++++|.||.|..+....... . ... ........
T Consensus 145 -~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~---~-------~~~---~~~~~~~~-- 208 (253)
T d1hxha_ 145 -IEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLP---K-------GVS---KEMVLHDP-- 208 (253)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSC---T-------TCC---HHHHBCBT--
T ss_pred -ccccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCc---c-------hhh---HHHHHhCc--
Confidence 223678999999999999988876 45999999999987642100000 0 000 00111110
Q ss_pred eeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 288 LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 288 i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
.....-.+...+|+|+++++++.... --.++++.+.+|
T Consensus 209 -----------~~~~~gr~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG 247 (253)
T d1hxha_ 209 -----------KLNRAGRAYMPERIAQLVLFLASDESSVMSGSELHADNS 247 (253)
T ss_dssp -----------TTBTTCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred -----------cccccCCCCCHHHHHHHHHHHhChhhCCCcCcEEEECcc
Confidence 11112246788999999999886432 235578988665
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.93 E-value=2.2e-25 Score=202.55 Aligned_cols=236 Identities=13% Similarity=0.124 Sum_probs=168.7
Q ss_pred CCCCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 64 SQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 64 ~~~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
++++++ |++|||||+++||.++|+.|+++|++|++++|+..+..++.+.+.+.. +.++.++.+|++|++++++++++
T Consensus 4 ~m~l~g-K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~ 80 (260)
T d1h5qa_ 4 TISFVN-KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF--GVKTKAYQCDVSNTDIVTKTIQQ 80 (260)
T ss_dssp EECCTT-EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH--TCCEEEEECCTTCHHHHHHHHHH
T ss_pred cccCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHH
Confidence 346788 999999999999999999999999999999987766665555554332 35789999999999999888865
Q ss_pred -----CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHH----HHHHHHHHHc-CCCEEEEeccceecCCCCCCCCC
Q 015080 144 -----NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNT----LVVLESMARH-GVDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~----~~ll~~~~~~-~~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|++|||||+...... .++.+..+++|+.++ +.+++.|.+. ..+.++.+||...+......
T Consensus 81 ~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~--- 157 (260)
T d1h5qa_ 81 IDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS--- 157 (260)
T ss_dssp HHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE---
T ss_pred HHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccccc---
Confidence 689999999998655432 233455778999884 4566666544 45577777775543221100
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
-.+.....+|+.||++.+.+++.++.| +||++++|.||.|-.+... .+.+...+......|
T Consensus 158 -~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~---------------~~~~~~~~~~~~~~p 221 (260)
T d1h5qa_ 158 -LNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTA---------------HMDKKIRDHQASNIP 221 (260)
T ss_dssp -TTEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGG---------------GSCHHHHHHHHHTCT
T ss_pred -cccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchh---------------ccCHHHHHHHHhcCC
Confidence 001123568999999999999999887 7899999999998765321 223334444433322
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
+ ..+...+|+|+++++++..... -.|+++.+.+|.
T Consensus 222 -l---------------~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG~ 257 (260)
T d1h5qa_ 222 -L---------------NRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGGQ 257 (260)
T ss_dssp -T---------------SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred -C---------------CCCcCHHHHHHHHHHHhcchhCCCcCceEEECCCe
Confidence 1 2356789999999998864332 356799997775
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.93 E-value=2.2e-25 Score=201.53 Aligned_cols=223 Identities=10% Similarity=0.095 Sum_probs=160.5
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCC-CHHHHHHHhhc-
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG-DAKAVNKFFSE- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-d~~~~~~~~~~- 143 (413)
++++ |+||||||+++||.++|++|+++|++|++++|...+.++ .+.+..... ..++.++.+|++ +.+++++++++
T Consensus 2 ~l~g-K~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~-~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~ 78 (254)
T d1sbya1 2 DLTN-KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTA-LAELKAINP-KVNITFHTYDVTVPVAESKKLLKKI 78 (254)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHH-HHHHHHHCT-TSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCC-CEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHH-HHHHHhhCC-CCCEEEEEeecCCCHHHHHHHHHHH
Confidence 5678 999999999999999999999999999999876655433 333344333 368999999998 66677776655
Q ss_pred ----CCCcEEEEcCcccCccCCcCChHHHHHHHHHHHH----HHHHHHHHc---CCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTL----VVLESMARH---GVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~----~ll~~~~~~---~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|+||||||... .+..+..+++|+.|+. .+++.|.+. ..++||++||.+.+...
T Consensus 79 ~~~~g~iDilvnnAG~~~----~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~--------- 145 (254)
T d1sbya1 79 FDQLKTVDILINGAGILD----DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI--------- 145 (254)
T ss_dssp HHHHSCCCEEEECCCCCC----TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC---------
T ss_pred HHHcCCCCEEEeCCCCCC----HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCC---------
Confidence 78999999999753 4668889999999854 455566544 24789999998775332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
....+|+.||++...+++.++.+ +||++++|.||.|..+.... ..... ..-..+.....
T Consensus 146 --~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~-~~~~~--------~~~~~~~~~~~------- 207 (254)
T d1sbya1 146 --HQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHT-FNSWL--------DVEPRVAELLL------- 207 (254)
T ss_dssp --TTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHS-CCCGG--------GSCTTHHHHHT-------
T ss_pred --CCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccc-cccch--------hHHHHHHhccc-------
Confidence 23678999999999999999988 68999999999998752100 00000 00000001000
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGK 337 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~ 337 (413)
.+.....+++|++++.+++....+ +++.+.+|.
T Consensus 208 -------------~~~~~~~e~va~~~~~~~~~~~tG--~vi~vdgG~ 240 (254)
T d1sbya1 208 -------------SHPTQTSEQCGQNFVKAIEANKNG--AIWKLDLGT 240 (254)
T ss_dssp -------------TSCCEEHHHHHHHHHHHHHHCCTT--CEEEEETTE
T ss_pred -------------cCCCCCHHHHHHHHHHhhhCCCCC--CEEEECCCE
Confidence 012346899999999999876644 789887763
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.93 E-value=1.1e-25 Score=208.28 Aligned_cols=216 Identities=16% Similarity=0.109 Sum_probs=156.2
Q ss_pred CCCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC------CCchhhhhhhhhcCCCCceEEEEccCCCHHHHH
Q 015080 65 QHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR------GNIGAVKVLQELFPEPGRLQFIYADLGDAKAVN 138 (413)
Q Consensus 65 ~~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 138 (413)
+++++ |++|||||+++||+++|+.|+++|++|++.++... ..+.+.+...++. .......+|++|.++++
T Consensus 3 m~l~g-KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~ 78 (302)
T d1gz6a_ 3 LRFDG-RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIR---RRGGKAVANYDSVEAGE 78 (302)
T ss_dssp CCCTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHH---HTTCEEEEECCCGGGHH
T ss_pred cCcCC-CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHh---hcccccccccchHHHHH
Confidence 46778 99999999999999999999999999999987543 2223333333332 23345668888877766
Q ss_pred HHhhc-----CCCcEEEEcCcccCccCCc----CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCC
Q 015080 139 KFFSE-----NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEK 205 (413)
Q Consensus 139 ~~~~~-----~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~ 205 (413)
++++. +++|+||||||+....... ++.+..+++|+.+ ++.+++.|++++.++||++||...+-...
T Consensus 79 ~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~~~- 157 (302)
T d1gz6a_ 79 KLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNF- 157 (302)
T ss_dssp HHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT-
T ss_pred HHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCCCC-
Confidence 65544 6899999999987655433 3345578899998 56677778888888999999977543222
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHh
Q 015080 206 MPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAAR 282 (413)
Q Consensus 206 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (413)
...+|+.||++.+.+++.++.| +||++++|.||.+-.+.. ...+
T Consensus 158 ----------~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~----------------~~~~------- 204 (302)
T d1gz6a_ 158 ----------GQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTE----------------TVMP------- 204 (302)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTG----------------GGSC-------
T ss_pred ----------CcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchh----------------hcCc-------
Confidence 2678999999999999999988 689999999997632210 0000
Q ss_pred ccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCC
Q 015080 283 GIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTG 336 (413)
Q Consensus 283 ~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~ 336 (413)
+....++..+|+|+++++++.......++++.+.+|
T Consensus 205 ------------------~~~~~~~~PedvA~~v~fL~S~~a~itG~~i~vdGG 240 (302)
T d1gz6a_ 205 ------------------EDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAG 240 (302)
T ss_dssp ------------------HHHHHHSCGGGTHHHHHHHTSTTCCCCSCEEEEETT
T ss_pred ------------------HhhHhcCCHHHHHHHHHHHcCCCcCCCCcEEEeCCC
Confidence 011223456899999999886444456678888665
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.2e-25 Score=205.04 Aligned_cols=173 Identities=18% Similarity=0.141 Sum_probs=137.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC---CCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---C
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS---RGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---N 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---~ 144 (413)
|.||||||+++||+++|+.|+++|++|+.+++.. +..+++.+..+++...+.++..+.||++|.+++.+++++ +
T Consensus 3 kVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g 82 (285)
T d1jtva_ 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEG 82 (285)
T ss_dssp EEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTS
T ss_pred CEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcccc
Confidence 7899999999999999999999999866554433 333444555555555567899999999999999988866 6
Q ss_pred CCcEEEEcCcccCccCCc----CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 145 AFDAVMHFAAVAYVGEST----LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 145 ~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
.+|+||||||........ ++.+..+++|+.| ++.+++.|++++.++||++||.+..-.. +.
T Consensus 83 ~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~-----------~~ 151 (285)
T d1jtva_ 83 RVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGL-----------PF 151 (285)
T ss_dssp CCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCC-----------TT
T ss_pred chhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCC-----------CC
Confidence 799999999987654432 3344578899998 6667888888888999999997765322 23
Q ss_pred CChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCC
Q 015080 217 INPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSD 254 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~ 254 (413)
..+|+.||++.+.+++.++.| +|+++++|.||.|-.+.
T Consensus 152 ~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~ 192 (285)
T d1jtva_ 152 NDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 192 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred chHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCChH
Confidence 678999999999999999988 69999999999987654
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.93 E-value=6.6e-25 Score=200.95 Aligned_cols=233 Identities=14% Similarity=0.124 Sum_probs=161.7
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |+||||||+++||+++|++|+++|++|++++|+. +.+.+..++. +.++.++.+|+++++++++++++
T Consensus 2 ~L~g-K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~---~~l~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~ 74 (276)
T d1bdba_ 2 KLKG-EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA---ERLAELETDH---GDNVLGIVGDVRSLEDQKQAASRCV 74 (276)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH---HHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHHc---CCCeeEEecccccHHHHHHHHHHHH
Confidence 5678 9999999999999999999999999999998753 3344443333 35789999999999999888765
Q ss_pred ---CCCcEEEEcCcccCccC-----CcCC----hHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGE-----STLD----PLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMP 207 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~-----~~~~----~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~ 207 (413)
.++|++|||||+..... ..+. .+..+++|+.+ ++.+++.|++.+ +++|++||...+-..
T Consensus 75 ~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S~~~~~~~---- 149 (276)
T d1bdba_ 75 ARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTISNAGFYPN---- 149 (276)
T ss_dssp HHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTSTT----
T ss_pred HHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeeechhccCC----
Confidence 68999999999754322 1222 45678899888 556677777765 689998886654222
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 208 ITEETPQAPINPYGKAKKMAEDIILDFSKN--SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 208 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~--~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
....+|+.||++.+.+++.++.| .+|+++.|.||.|-.+........... .........+.+....
T Consensus 150 -------~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 217 (276)
T d1bdba_ 150 -------GGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGS-----KAISTVPLADMLKSVL 217 (276)
T ss_dssp -------SSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC--------------CHHHHHTTTC
T ss_pred -------CCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhh-----hccCcHHHHHHHHhcC
Confidence 22678999999999999999988 459999999999876532111000000 0001111222232222
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHH--hcCCCCccEEEecCCCc
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALE--RAQPKKVGIYNVGTGKG 338 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~--~~~~~~~~~yni~~~~~ 338 (413)
| ...+...+|+|+++++++. ...--.|+++++.+|-+
T Consensus 218 P----------------lgR~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG~~ 256 (276)
T d1bdba_ 218 P----------------IGRMPEVEEYTGAYVFFATRGDAAPATGALLNYDGGLG 256 (276)
T ss_dssp T----------------TSSCCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSSGG
T ss_pred C----------------CCCCcCHHHHHHHHHHHcCCcccCCeeCcEEEECcChh
Confidence 2 1235678999999998874 23334568999977744
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=4e-25 Score=200.19 Aligned_cols=177 Identities=15% Similarity=0.098 Sum_probs=136.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
++++ |++|||||+++||.++|+.|+++|++|++++|+..+.+++.+.+++... +.++.++.||++|+++++++++.
T Consensus 7 ~lk~-Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~~~Dls~~~~v~~~v~~~~ 84 (257)
T d1xg5a_ 7 RWRD-RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY-PGTLIPYRCDLSNEEDILSMFSAIR 84 (257)
T ss_dssp GGTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEEccCCCHHHHHHHHHHHH
Confidence 3667 9999999999999999999999999999999866555555555555433 25789999999999999887766
Q ss_pred ---CCCcEEEEcCcccCccCCc----CChHHHHHHHHHHH----HHHHHHHHHcC--CCEEEEeccceecCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSNT----LVVLESMARHG--VDTLIYSSTCATYGEPEKMPITE 210 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~----~~ll~~~~~~~--~~~iV~~SS~~~~~~~~~~~~~e 210 (413)
+++|+||||||...+.... +..+..+++|+.+. +.+++.+++.+ .++||++||.+.+...
T Consensus 85 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~------- 157 (257)
T d1xg5a_ 85 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL------- 157 (257)
T ss_dssp HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC-------
T ss_pred HhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCC-------
Confidence 6899999999987654433 33445677888774 45666666654 5799999997764221
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh-----CCCcEEEEeecceecC
Q 015080 211 ETPQAPINPYGKAKKMAEDIILDFSKN-----SDMAVMILRYFNVIGS 253 (413)
Q Consensus 211 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~lrp~~v~G~ 253 (413)
|......|+.+|++.+.+++.++.+ +||++++|.||.+-.+
T Consensus 158 --p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~ 203 (257)
T d1xg5a_ 158 --PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQ 203 (257)
T ss_dssp --SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSS
T ss_pred --CCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCCh
Confidence 1122456999999999999988865 6899999999987653
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=1.1e-24 Score=197.66 Aligned_cols=229 Identities=16% Similarity=0.079 Sum_probs=159.3
Q ss_pred CCCCceEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 66 HEEGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG--~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
++++ |++|||||+| +||.++|++|+++|++|++.+|+.+..+.+.+.... .....++++|++|+++++++++.
T Consensus 5 ~L~g-K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~ 79 (256)
T d1ulua_ 5 DLSG-KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEA----LGGALLFRADVTQDEELDALFAG 79 (256)
T ss_dssp CCTT-CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH----TTCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhc----cCcccccccccCCHHHHHHHHHH
Confidence 5678 9999999987 899999999999999999988753322222222222 35678899999999999888765
Q ss_pred -----CCCcEEEEcCcccCcc----CC----cCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCC
Q 015080 144 -----NAFDAVMHFAAVAYVG----ES----TLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~~----~~----~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~ 208 (413)
.++|++|||||+.... .. .++....+++|+.++..+++++... +.++||++||.......
T Consensus 80 ~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~~----- 154 (256)
T d1ulua_ 80 VKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVV----- 154 (256)
T ss_dssp HHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBC-----
T ss_pred HHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCCC-----
Confidence 7899999999975321 11 1223446788998887777766532 24689999997765322
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
+...+|+.||++.+.+++.++.| +||++++|.||.+..+..... .......+...+..
T Consensus 155 ------~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~-------------~~~~~~~~~~~~~~ 215 (256)
T d1ulua_ 155 ------PKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSI-------------PGFTKMYDRVAQTA 215 (256)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------------------CHHHHHHHHHHS
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccch-------------hhhHHHHHHHHhcC
Confidence 23678999999999999999988 689999999999887643211 11122333333222
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCcc
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGR 339 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~ 339 (413)
| + ..+...+|+|+++++++..... -.|+++.+.+|.++
T Consensus 216 p-l---------------~R~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG~~~ 254 (256)
T d1ulua_ 216 P-L---------------RRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHI 254 (256)
T ss_dssp T-T---------------SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred C-C---------------CCCcCHHHHHHHHHHHhCchhCCccCCeEEECcCEeC
Confidence 2 1 2356789999999998875432 35679999877553
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.92 E-value=1.3e-24 Score=195.00 Aligned_cols=222 Identities=18% Similarity=0.162 Sum_probs=161.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
+++ |++|||||+++||.++|+.|+++|++|++.+|+. +.+.+.++++ +.++.++++|+++++++++++++
T Consensus 3 l~g-K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~---~~~~~~~~~~---~~~~~~~~~Dls~~~~i~~~~~~i~~ 75 (241)
T d2a4ka1 3 LSG-KTILVTGAASGIGRAALDLFAREGASLVAVDREE---RLLAEAVAAL---EAEAIAVVADVSDPKAVEAVFAEALE 75 (241)
T ss_dssp TTT-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH---HHHHHHHHTC---CSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHHc---CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 567 9999999999999999999999999999998654 3444444444 46789999999999999888766
Q ss_pred --CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQA 215 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~ 215 (413)
.++|++|||||....... .++.+..+++|+.++..+.+++... +.+.++++||.+... .+
T Consensus 76 ~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~------------~~ 143 (241)
T d2a4ka1 76 EFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG------------AF 143 (241)
T ss_dssp HHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC------------HH
T ss_pred HhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccccc------------cc
Confidence 689999999998655442 2334456889999977777666543 334666666644321 12
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEec
Q 015080 216 PINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292 (413)
Q Consensus 216 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 292 (413)
....|+.+|++.+.+++.++.| +|+++++|.||.+-.+... .+.+.......+..|
T Consensus 144 ~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~---------------~~~~~~~~~~~~~~p------ 202 (241)
T d2a4ka1 144 GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTA---------------GLPPWAWEQEVGASP------ 202 (241)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGT---------------TSCHHHHHHHHHTST------
T ss_pred CccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHH---------------hhhHhHHHHHHhCCC------
Confidence 2567999999999999999988 6799999999998654311 122333333333222
Q ss_pred ccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCc
Q 015080 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKG 338 (413)
Q Consensus 293 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~ 338 (413)
...+...+|+|+++++++... ..-.|+++.+.+|.+
T Consensus 203 ----------~~r~~~p~dva~~v~fL~S~~s~~itG~~i~vDGG~s 239 (241)
T d2a4ka1 203 ----------LGRAGRPEEVAQAALFLLSEESAYITGQALYVDGGRS 239 (241)
T ss_dssp ----------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred ----------CCCCcCHHHHHHHHHHHhcchhCCCcCceEEeCCCcc
Confidence 124678999999999998743 233557898987754
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=1.3e-24 Score=194.17 Aligned_cols=215 Identities=14% Similarity=0.082 Sum_probs=154.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-CC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-NA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~ 145 (413)
+++ |++|||||+++||+++|+.|+++|++|++++|+. +.+++ ....++.+|+++. ++.++++ .+
T Consensus 2 Lkg-K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~-------~~l~~-----~~~~~~~~Dv~~~--~~~~~~~~g~ 66 (234)
T d1o5ia_ 2 IRD-KGVLVLAASRGIGRAVADVLSQEGAEVTICARNE-------ELLKR-----SGHRYVVCDLRKD--LDLLFEKVKE 66 (234)
T ss_dssp CTT-CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-------HHHHH-----TCSEEEECCTTTC--HHHHHHHSCC
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH-------HHHHh-----cCCcEEEcchHHH--HHHHHHHhCC
Confidence 346 9999999999999999999999999999998742 12222 2456788999874 3444444 78
Q ss_pred CcEEEEcCcccCccCCc----CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGEST----LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|++|||||+....... ++.+..+++|+.+ ++.+++.|++.+.+++|++||....... ...
T Consensus 67 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~-----------~~~ 135 (234)
T d1o5ia_ 67 VDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPI-----------ENL 135 (234)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----------TTB
T ss_pred CcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccccc-----------ccc
Confidence 99999999976554432 3344567788887 5667777888888899999997765332 236
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
..|+.+|++.+.+++.++.| +||++++|.||.+-.+.... .+-+..........|
T Consensus 136 ~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~--------------~~~~~~~~~~~~~~p-------- 193 (234)
T d1o5ia_ 136 YTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKE--------------LLSEEKKKQVESQIP-------- 193 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHH--------------HSCHHHHHHHHTTST--------
T ss_pred ccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhh--------------hcCHHHHHHHHhcCC--------
Confidence 78999999999999999988 68999999999987653110 111222223322222
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCC
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGK 337 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~ 337 (413)
...+...+|+|+++++++.... --.|+++.+.+|.
T Consensus 194 --------l~R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~ 229 (234)
T d1o5ia_ 194 --------MRRMAKPEEIASVVAFLCSEKASYLTGQTIVVDGGL 229 (234)
T ss_dssp --------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred --------CCCCcCHHHHHHHHHHHhChhhcCCcCcEEEECccc
Confidence 2246789999999999886433 2356899997764
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=3.6e-25 Score=201.20 Aligned_cols=175 Identities=13% Similarity=0.038 Sum_probs=135.1
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHH---CCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhh
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLK---DSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFS 142 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 142 (413)
.+.+ |+++||||+++||.++|++|++ +|++|++++|+....+++.+.+..... +.++.++.||++|+++++++++
T Consensus 3 ~L~g-KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~~~Dvs~~~~v~~l~~ 80 (259)
T d1oaaa_ 3 GLGC-AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQP-DLKVVLAAADLGTEAGVQRLLS 80 (259)
T ss_dssp CCBS-EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCT-TSEEEEEECCTTSHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcC-CceEEEEEccCCCHHHHHHHHH
Confidence 4667 9999999999999999999986 799999999866555555555554433 2578999999999999988764
Q ss_pred c---------CCCcEEEEcCcccCccC---C-c---CChHHHHHHHHHHHHHHHHHHH----HcC--CCEEEEeccceec
Q 015080 143 E---------NAFDAVMHFAAVAYVGE---S-T---LDPLKYYHNITSNTLVVLESMA----RHG--VDTLIYSSTCATY 200 (413)
Q Consensus 143 ~---------~~~dvvi~~Ag~~~~~~---~-~---~~~~~~~~~n~~~~~~ll~~~~----~~~--~~~iV~~SS~~~~ 200 (413)
. ..+|++|||||...+.. . . ++.+..+++|+.++..+.+++. +.+ .++||++||.+.+
T Consensus 81 ~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~ 160 (259)
T d1oaaa_ 81 AVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL 160 (259)
T ss_dssp HHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT
T ss_pred HHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 3 35789999999753211 1 2 2344578899999666655554 333 3689999997765
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh-CCCcEEEEeecceecC
Q 015080 201 GEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN-SDMAVMILRYFNVIGS 253 (413)
Q Consensus 201 ~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~-~gi~~~~lrp~~v~G~ 253 (413)
.. .....+|+.||++.+.+++.++.| .||++++|.||.|-.+
T Consensus 161 ~~-----------~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~ 203 (259)
T d1oaaa_ 161 QP-----------YKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDND 203 (259)
T ss_dssp SC-----------CTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSH
T ss_pred CC-----------CccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCH
Confidence 32 223678999999999999999888 7899999999998764
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.92 E-value=5.1e-25 Score=197.38 Aligned_cols=230 Identities=16% Similarity=0.144 Sum_probs=158.4
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCCCEE--EEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDSYRV--TIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G~~V--~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
+|++|||||||||||++++++|+++|++| +.+.|+. +... .+ ..+++++.+|+++.+++.+++ .++
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~---~~~~----~~---~~~~~~~~~d~~~~~~~~~~~--~~~ 69 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA---QGKE----KI---GGEADVFIGDITDADSINPAF--QGI 69 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCH---HHHH----HT---TCCTTEEECCTTSHHHHHHHH--TTC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCH---HHHH----hc---cCCcEEEEeeecccccccccc--ccc
Confidence 36899999999999999999999999764 4444432 2111 11 257889999999999999999 689
Q ss_pred cEEEEcCcccCccC-------------CcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCC
Q 015080 147 DAVMHFAAVAYVGE-------------STLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP 213 (413)
Q Consensus 147 dvvi~~Ag~~~~~~-------------~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~ 213 (413)
|+|||+|+...... ..........+|+.++++++..+.....++..+.|+...+..... ..
T Consensus 70 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~------~~ 143 (252)
T d2q46a1 70 DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHP------LN 143 (252)
T ss_dssp SEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTCG------GG
T ss_pred eeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCCCcc------cc
Confidence 99999998654321 112344467789999999999999998899999998665432110 01
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecc
Q 015080 214 QAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGT 293 (413)
Q Consensus 214 ~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 293 (413)
..+...|...+.+.+.+ ..+.|++++++||+.+||+..... .+ +..... .
T Consensus 144 ~~~~~~~~~~~~~~~~~----~~~~~~~~~ilRp~~v~g~~~~~~-------------~~-------~~~~~~--~---- 193 (252)
T d2q46a1 144 KLGNGNILVWKRKAEQY----LADSGTPYTIIRAGGLLDKEGGVR-------------EL-------LVGKDD--E---- 193 (252)
T ss_dssp GGGGCCHHHHHHHHHHH----HHHSSSCEEEEEECEEECSCTTSS-------------CE-------EEESTT--G----
T ss_pred cccccchhhhhhhhhhh----hhcccccceeecceEEECCCcchh-------------hh-------hhccCc--c----
Confidence 11233455555554444 344899999999999999863210 00 000000 0
Q ss_pred cccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCC---cccHHHHHHHHHHHc
Q 015080 294 DYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGK---GRSVKEFVEACKKAT 352 (413)
Q Consensus 294 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~---~~s~~e~~~~i~~~~ 352 (413)
......++||++|+|++++.+++++... +++|||+++. ..++.++.+.+.+..
T Consensus 194 -----~~~~~~~~i~~~Dva~a~~~~l~~~~~~-g~~~~i~~~~~~~~~~~~~~~~lf~~i~ 249 (252)
T d2q46a1 194 -----LLQTDTKTVPRADVAEVCIQALLFEEAK-NKAFDLGSKPEGTSTPTKDFKALFSQVT 249 (252)
T ss_dssp -----GGGSSCCEEEHHHHHHHHHHHTTCGGGT-TEEEEEEECCTTTSCCCCCHHHHHTTCC
T ss_pred -----cccCCCCeEEHHHHHHHHHHHhCCcccc-CcEEEEeeCCCCCChhHHHHHHHHHHHH
Confidence 1123357899999999999999876653 4799998654 346677776665543
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.92 E-value=7.9e-24 Score=192.09 Aligned_cols=238 Identities=16% Similarity=0.070 Sum_probs=158.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC-CchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG-NIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
.+.| |+||||||+++||.++|+.|+++|++|++.++.... .+++.+.+++ .+.++.++.+|++|++++++++++
T Consensus 3 ~L~G-K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~---~g~~~~~~~~D~~~~~~v~~~~~~~ 78 (259)
T d1ja9a_ 3 PLAG-KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKK---LGAQGVAIQADISKPSEVVALFDKA 78 (259)
T ss_dssp TTTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHH---cCCCceEecCCCCCHHHHHHHHHHH
Confidence 3678 999999999999999999999999999987643221 2333333433 356799999999999999887765
Q ss_pred ----CCCcEEEEcCcccCccCC----cCChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccc-eecCCCCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGES----TLDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTC-ATYGEPEKMPITEET 212 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~-~~~~~~~~~~~~e~~ 212 (413)
.++|++|||||....... .+..+..+++|+.+...+++.+... ..+++++++|. +.+..
T Consensus 79 ~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~~---------- 148 (259)
T d1ja9a_ 79 VSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTG---------- 148 (259)
T ss_dssp HHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCS----------
T ss_pred HHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccccC----------
Confidence 689999999998655442 2334557888998865555554432 22466666653 33321
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
......|+.||++.+.+++.++.+ +||++++|.||.+-.+.......... .....+.....+...+.+..|
T Consensus 149 -~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p--- 222 (259)
T d1ja9a_ 149 -IPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYA--PGGYKGMPQEKIDEGLANMNP--- 222 (259)
T ss_dssp -CCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTS--TTCCTTCCHHHHHHHHHHTST---
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhh--hhhcccCCHHHHHHHHHhCCC---
Confidence 122678999999999999999988 68999999999986531000000000 000000112233333333322
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCC
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTG 336 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~ 336 (413)
...+...+|+|+++++++..... -.|+++.+.+|
T Consensus 223 -------------l~R~g~p~eVa~~v~fL~S~~a~~itG~~i~vDGG 257 (259)
T d1ja9a_ 223 -------------LKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 257 (259)
T ss_dssp -------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -------------CCCCcCHHHHHHHHHHHhCchhcCCcCceEEeCCC
Confidence 22467899999999999975442 35578888665
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4.3e-24 Score=191.99 Aligned_cols=228 Identities=14% Similarity=0.062 Sum_probs=161.2
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-CC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-NA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~ 145 (413)
+.+ |++|||||+++||+++++.|+++|++|++++|+..+ +. .+.+ ...+....+|+.+.+.++...+. .+
T Consensus 4 l~g-K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~---l~-~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~ 74 (245)
T d2ag5a1 4 LDG-KVIILTAAAQGIGQAAALAFAREGAKVIATDINESK---LQ-ELEK----YPGIQTRVLDVTKKKQIDQFANEVER 74 (245)
T ss_dssp TTT-CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HG-GGGG----STTEEEEECCTTCHHHHHHHHHHCSC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHH---HH-HHHh----ccCCceeeeecccccccccccccccc
Confidence 667 999999999999999999999999999999875322 22 2222 25688899999999888877766 68
Q ss_pred CcEEEEcCcccCccCCc----CChHHHHHHHHHHH----HHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 146 FDAVMHFAAVAYVGEST----LDPLKYYHNITSNT----LVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~----~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
+|+||||||........ ++.+..+++|+.++ +.+++.+.+.+.++||++||...- ..+....
T Consensus 75 id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~----------~~~~~~~ 144 (245)
T d2ag5a1 75 LDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASS----------VKGVVNR 144 (245)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTT----------TBCCTTB
T ss_pred ceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhc----------cCCccch
Confidence 99999999987654432 33455778898884 455666677777899999985431 0122346
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
.+|+.+|++.+.+++.++.| +||+++.|.||.|-.|..... ...........+......|
T Consensus 145 ~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~---------~~~~~~~~~~~~~~~~~~p-------- 207 (245)
T d2ag5a1 145 CVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQER---------IQARGNPEEARNDFLKRQK-------- 207 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHH---------HHHSSSHHHHHHHHHHTCT--------
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhh---------hhhhhhhHHHHHHHHhcCC--------
Confidence 78999999999999999988 689999999999987531000 0000001111222222111
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...+...+|+|+++.+++.... .-.|+++.|.+|.+
T Consensus 208 --------l~R~~~pedva~~v~fL~s~~s~~iTG~~i~VDGG~s 244 (245)
T d2ag5a1 208 --------TGRFATAEEIAMLCVYLASDESAYVTGNPVIIDGGWS 244 (245)
T ss_dssp --------TSSCEEHHHHHHHHHHHHSGGGTTCCSCEEEECTTGG
T ss_pred --------CCCCcCHHHHHHHHHHHhChhhCCCcCceEEeCCCcC
Confidence 2246788999999999997533 33567999987754
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.91 E-value=2.4e-24 Score=194.67 Aligned_cols=224 Identities=12% Similarity=0.073 Sum_probs=156.8
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----CCC
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-----NAF 146 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~~ 146 (413)
++|||||+++||+++|+.|+++|++|++.+|+.+..+++..... .+..+|++|.+++++++++ +++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~---------~~~~~dv~~~~~~~~~~~~~~~~~G~i 72 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAE---------TYPQLKPMSEQEPAELIEAVTSAYGQV 72 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHH---------HCTTSEECCCCSHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhC---------cEEEeccCCHHHHHHHHHHHHHHcCCC
Confidence 69999999999999999999999999998876554443332221 2235888888777766654 689
Q ss_pred cEEEEcCcccCc-cCCc----CChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCC
Q 015080 147 DAVMHFAAVAYV-GEST----LDPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI 217 (413)
Q Consensus 147 dvvi~~Ag~~~~-~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~ 217 (413)
|++|||||+... .... ++.+..+++|+.+ ++.+++.|++++.++||++||.+.+.... ..
T Consensus 73 DiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~~-----------~~ 141 (252)
T d1zmta1 73 DVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWK-----------EL 141 (252)
T ss_dssp CEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCT-----------TC
T ss_pred CEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeecccccccccccc-----------cc
Confidence 999999997532 2222 2344567788887 56677778888888999999977654322 26
Q ss_pred ChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEeccc
Q 015080 218 NPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD 294 (413)
Q Consensus 218 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 294 (413)
.+|+.||++.+.+++.++.| +||++++|.||.|-.+....... . ......+.....+.+..|
T Consensus 142 ~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~---~----~~~~~~~e~~~~~~~~~p-------- 206 (252)
T d1zmta1 142 STYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYP---T----EPWKTNPEHVAHVKKVTA-------- 206 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCB---H----HHHTTCHHHHHHHHHHSS--------
T ss_pred cccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhh---c----ccccCCHHHHHHHHhcCC--------
Confidence 78999999999999999988 68999999999998764321100 0 000111222333332222
Q ss_pred ccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCc
Q 015080 295 YSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKG 338 (413)
Q Consensus 295 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~ 338 (413)
...+...+|+|+++++++..... -.|+++.+.+|.+
T Consensus 207 --------l~R~g~pedvA~~v~fL~S~~s~~iTG~~i~vdGG~~ 243 (252)
T d1zmta1 207 --------LQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFP 243 (252)
T ss_dssp --------SSSCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTTCC
T ss_pred --------CCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECCCce
Confidence 11367899999999999875432 2457999987754
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.91 E-value=2.3e-23 Score=187.84 Aligned_cols=172 Identities=13% Similarity=0.126 Sum_probs=130.9
Q ss_pred ceEEEEEcCCChHHHHHHHHHH---HCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---
Q 015080 70 VTHVLVTGGAGYIGSHAALRLL---KDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~---~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
||+|||||||++||.++|++|+ ++|++|++++|+..+.+++.+..+. +.++.++.||++|+++++++++.
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~i~~ 77 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN----HSNIHILEIDLRNFDAYDKLVADIEG 77 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH----CTTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhc----CCcEEEEEEEeccHHHHHHHHhhhHH
Confidence 6999999999999999999996 4799999999987766555433332 46899999999999988877653
Q ss_pred ----CCCcEEEEcCcccCccC-C-c---CChHHHHHHHHHH----HHHHHHHHHHc-----------CCCEEEEecccee
Q 015080 144 ----NAFDAVMHFAAVAYVGE-S-T---LDPLKYYHNITSN----TLVVLESMARH-----------GVDTLIYSSTCAT 199 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~-~-~---~~~~~~~~~n~~~----~~~ll~~~~~~-----------~~~~iV~~SS~~~ 199 (413)
.++|+||||||+..... . . ++.+..+++|+.+ ++.+++.|++. +.+++|++||...
T Consensus 78 ~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g 157 (248)
T d1snya_ 78 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILG 157 (248)
T ss_dssp HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGG
T ss_pred HhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccccccccccccccc
Confidence 57999999999865432 2 1 2244578899999 44556666653 3579999999654
Q ss_pred cCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecC
Q 015080 200 YGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGS 253 (413)
Q Consensus 200 ~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~ 253 (413)
.-. ..+.....+|+.||++...+++.++.+ .|++++.|.||.|-.+
T Consensus 158 ~~~--------~~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~ 206 (248)
T d1snya_ 158 SIQ--------GNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTD 206 (248)
T ss_dssp CST--------TCCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCST
T ss_pred ccC--------CCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCC
Confidence 311 012233568999999999999999877 6899999999998764
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.90 E-value=2.9e-24 Score=189.24 Aligned_cols=190 Identities=15% Similarity=0.125 Sum_probs=135.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|||||||||||++|+++|+++|+ +|+++.|...... .. +..+..|..++.+.+. ..+|+
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~-------------~~---~~~~~~d~~~~~~~~~-~~~d~ 65 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH-------------PR---LDNPVGPLAELLPQLD-GSIDT 65 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC-------------TT---EECCBSCHHHHGGGCC-SCCSE
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc-------------cc---ccccccchhhhhhccc-cchhe
Confidence 8999999999999999999999998 5666554322211 22 3345556555544432 56899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAE 228 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e 228 (413)
|||++|.... .......+.+.|+.++.++++++++.+++++|++||..+++. +.+.|..+|..+|
T Consensus 66 vi~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~~-------------~~~~y~~~K~~~E 130 (212)
T d2a35a1 66 AFCCLGTTIK--EAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK-------------SSIFYNRVKGELE 130 (212)
T ss_dssp EEECCCCCHH--HHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT-------------CSSHHHHHHHHHH
T ss_pred eeeeeeeecc--ccccccccccchhhhhhhcccccccccccccccccccccccc-------------cccchhHHHHHHh
Confidence 9999986532 223456788999999999999999999999999999877643 2467999999999
Q ss_pred HHHHHHHhhCCC-cEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecc
Q 015080 229 DIILDFSKNSDM-AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307 (413)
Q Consensus 229 ~~~~~~~~~~gi-~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i 307 (413)
..+++ .+. +++++||+.|||+.... .+... +.... ..+ ....+++|
T Consensus 131 ~~l~~----~~~~~~~I~Rp~~v~G~~~~~--------------~~~~~----~~~~~--~~~---------~~~~~~~i 177 (212)
T d2a35a1 131 QALQE----QGWPQLTIARPSLLFGPREEF--------------RLAEI----LAAPI--ARI---------LPGKYHGI 177 (212)
T ss_dssp HHHTT----SCCSEEEEEECCSEESTTSCE--------------EGGGG----TTCCC--C-------------CHHHHH
T ss_pred hhccc----cccccceeeCCcceeCCcccc--------------cHHHH----HHHHH--hhc---------cCCCCcEE
Confidence 88765 565 59999999999986431 11110 11100 000 01224679
Q ss_pred cHHHHHHHHHHHHHhcCC
Q 015080 308 DVNDLVDAHVKALERAQP 325 (413)
Q Consensus 308 ~v~Dva~a~~~~~~~~~~ 325 (413)
|++|+|++++.+++++..
T Consensus 178 ~v~DvA~ai~~~~~~~~~ 195 (212)
T d2a35a1 178 EACDLARALWRLALEEGK 195 (212)
T ss_dssp HHHHHHHHHHHHHTCCCS
T ss_pred EHHHHHHHHHHHHcCCCC
Confidence 999999999999987665
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.90 E-value=8.7e-23 Score=186.54 Aligned_cols=242 Identities=16% Similarity=0.097 Sum_probs=161.2
Q ss_pred CCCCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 64 SQHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 64 ~~~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
+..++| |++|||||+++||.++++.|+++|++|++++++.. +.+.+...++...+..+.++.+|++|++++.+++++
T Consensus 13 ~~sL~g-K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~--~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~ 89 (272)
T d1g0oa_ 13 SASLEG-KVALVTGAGRGIGREMAMELGRRGCKVIVNYANST--ESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEE 89 (272)
T ss_dssp GGCCTT-CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CcCCCC-CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch--HHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHH
Confidence 345788 99999999999999999999999999999886432 223333333333356899999999999999988766
Q ss_pred -----CCCcEEEEcCcccCccCCc----CChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 -----NAFDAVMHFAAVAYVGEST----LDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 -----~~~dvvi~~Ag~~~~~~~~----~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
.++|++|||||........ +.....+++|+.++..+++++... ..+++++++|......
T Consensus 90 ~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~~---------- 159 (272)
T d1g0oa_ 90 AVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAK---------- 159 (272)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCS----------
T ss_pred HHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccccc----------
Confidence 7899999999986554322 234446778999976666665543 2358888877543211
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHH-HHhccccce
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFD-AARGIIAGL 288 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i 288 (413)
+......|+.+|++.+.+++.++.+ +||+++.|.||.|-.+............ ........... ......|
T Consensus 160 ~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~P-- 234 (272)
T d1g0oa_ 160 AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPN---GENLSNEEVDEYAAVQWSP-- 234 (272)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTT---CTTCCHHHHHHHHHHHSCT--
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhc---ccccchHHHHHHHHHccCC--
Confidence 2223567999999999999999988 6899999999998754200000000000 00000011111 1111111
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCC
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGK 337 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~ 337 (413)
...+...+|+|+++++++..... -.|+++.+.+|.
T Consensus 235 --------------lgR~~~peevA~~v~fL~s~~s~~itG~~i~vDGG~ 270 (272)
T d1g0oa_ 235 --------------LRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGA 270 (272)
T ss_dssp --------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred --------------CCCCcCHHHHHHHHHHHhCchhcCccCceEeECCCC
Confidence 12468899999999999874432 355788887764
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.90 E-value=5.8e-23 Score=190.01 Aligned_cols=232 Identities=14% Similarity=0.086 Sum_probs=160.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.++| |++|||||+|+||.++|++|+++|++|++++|+..+.+++.+.+.... +..+.++.+|++|.++++++++.
T Consensus 22 ~l~g-K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~--g~~~~~~~~D~~~~~~v~~~~~~~~ 98 (294)
T d1w6ua_ 22 SFQG-KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT--GNKVHAIQCDVRDPDMVQNTVSELI 98 (294)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc--CCceEEEEecccChHHHHHHhhhhh
Confidence 6788 999999999999999999999999999999986655555555444332 35788999999999999877655
Q ss_pred ---CCCcEEEEcCcccCccCCcCC----hHHHHHHHHHHHHHHH----HHHHH-cCCCEEEEeccceecCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGESTLD----PLKYYHNITSNTLVVL----ESMAR-HGVDTLIYSSTCATYGEPEKMPITEE 211 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~~~~----~~~~~~~n~~~~~~ll----~~~~~-~~~~~iV~~SS~~~~~~~~~~~~~e~ 211 (413)
.++|++|||||.......... ....+.+|..+...+. ..+.. .+.+.++.+||........
T Consensus 99 ~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~~------- 171 (294)
T d1w6ua_ 99 KVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSG------- 171 (294)
T ss_dssp HHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCT-------
T ss_pred hhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhccc-------
Confidence 689999999998655443222 3335566766644433 33333 3455777777765443222
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccce
Q 015080 212 TPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL 288 (413)
Q Consensus 212 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 288 (413)
...+|+.+|++.+.+++.++.+ +||++++|.||.|-.+.......+ .+..........|
T Consensus 172 ----~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~------------~~~~~~~~~~~~p-- 233 (294)
T d1w6ua_ 172 ----FVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDP------------TGTFEKEMIGRIP-- 233 (294)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCT------------TSHHHHHHHTTCT--
T ss_pred ----ccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCC------------cHHHHHHHhhcCC--
Confidence 2568999999999999999988 689999999999987653211100 1112222222222
Q ss_pred eEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCcc
Q 015080 289 KVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGR 339 (413)
Q Consensus 289 ~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~ 339 (413)
...+...+|+|+++.+++.... --.|+++.+.+|.++
T Consensus 234 --------------l~R~~~pediA~~v~fL~sd~s~~itG~~i~vDGG~~l 271 (294)
T d1w6ua_ 234 --------------CGRLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEV 271 (294)
T ss_dssp --------------TSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHHH
T ss_pred --------------CCCCCCHHHHHHHHHHHhCchhcCCCCcEEEECCChhh
Confidence 1246788999999999987543 235689999887654
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.90 E-value=5.9e-23 Score=186.48 Aligned_cols=208 Identities=19% Similarity=0.179 Sum_probs=156.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----CC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----NA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~~ 145 (413)
+++|||||+|+||.+++++|+++|+ +|++++|+..+.+...+.++++...+.++.++.||++|+++++++++. .+
T Consensus 10 gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~~~ 89 (259)
T d2fr1a1 10 GTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDVP 89 (259)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTSC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccccccc
Confidence 6999999999999999999999999 688888876566666666665554567899999999999999988865 46
Q ss_pred CcEEEEcCcccCccCCcCC----hHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhH
Q 015080 146 FDAVMHFAAVAYVGESTLD----PLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYG 221 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~----~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~ 221 (413)
+|.||||||+.......+. ....+++|+.++.++.+++...+.++||++||....-...+ ...|+
T Consensus 90 i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~g~~~-----------~~~Ya 158 (259)
T d2fr1a1 90 LSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAPG-----------LGGYA 158 (259)
T ss_dssp EEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCTT-----------CTTTH
T ss_pred ccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhccCCcc-----------cHHHH
Confidence 9999999998765443322 33467789999999999988888889999999776533222 67899
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCc
Q 015080 222 KAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGT 301 (413)
Q Consensus 222 ~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 301 (413)
++|...+.+++.++. .|+++++|.||.+.+++.. -....+.+.. .+
T Consensus 159 Aaka~l~~la~~~~~-~Gi~v~~I~pg~~~~~g~~-----------------~~~~~~~~~~---------------~G- 204 (259)
T d2fr1a1 159 PGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMA-----------------EGPVADRFRR---------------HG- 204 (259)
T ss_dssp HHHHHHHHHHHHHHH-TTCCCEEEEECCBC-----------------------------CTT---------------TT-
T ss_pred HHHHhHHHHHHHHHh-CCCCEEECCCCcccCCccc-----------------cchHHHHHHh---------------cC-
Confidence 999999999988876 6999999999998876411 0111111110 11
Q ss_pred eeeecccHHHHHHHHHHHHHhcCC
Q 015080 302 CVRDYIDVNDLVDAHVKALERAQP 325 (413)
Q Consensus 302 ~~~~~i~v~Dva~a~~~~~~~~~~ 325 (413)
...+..+++++++..++.....
T Consensus 205 --~~~~~~~~~~~~l~~~l~~~~~ 226 (259)
T d2fr1a1 205 --VIEMPPETACRALQNALDRAEV 226 (259)
T ss_dssp --EECBCHHHHHHHHHHHHHTTCS
T ss_pred --CCCCCHHHHHHHHHHHHhCCCc
Confidence 2457899999999999987654
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.89 E-value=2.9e-22 Score=189.91 Aligned_cols=239 Identities=11% Similarity=0.013 Sum_probs=168.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHH-HHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKA-VNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~-~~~~~~~~~~dvv 149 (413)
|+|+|||||||||++++++|+++|++|+++.|+..+.. .+.+.. ..+++++++|++|..+ ++.++ .++|++
T Consensus 4 ktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~--~~~~~~----~~~v~~~~gD~~d~~~~~~~a~--~~~~~~ 75 (350)
T d1xgka_ 4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI--AEELQA----IPNVTLFQGPLLNNVPLMDTLF--EGAHLA 75 (350)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH--HHHHHT----STTEEEEESCCTTCHHHHHHHH--TTCSEE
T ss_pred CEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhh--hhhhcc----cCCCEEEEeeCCCcHHHHHHHh--cCCceE
Confidence 89999999999999999999999999999998654422 222222 2579999999998554 56676 678888
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAED 229 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 229 (413)
+++..... ..++..+.++++++++.++.++|+.||...... ....+..+|..+|...+.
T Consensus 76 ~~~~~~~~------------~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~---------~~~~~~~~~~~~k~~~~~ 134 (350)
T d1xgka_ 76 FINTTSQA------------GDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSL---------YGPWPAVPMWAPKFTVEN 134 (350)
T ss_dssp EECCCSTT------------SCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGG---------TSSCCCCTTTHHHHHHHH
T ss_pred Eeeccccc------------chhhhhhhHHHHHHHHhCCCceEEEeecccccc---------CCcccchhhhhhHHHHHH
Confidence 87654211 125666788999999999888888888654322 122334568889988888
Q ss_pred HHHHHHhhCCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccH
Q 015080 230 IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309 (413)
Q Consensus 230 ~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v 309 (413)
+..+ .+++++++||+..++........... ......+........ +++..+.++++
T Consensus 135 ~~~~----~~~~~~~vr~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~------~~~~~~~~i~~ 190 (350)
T d1xgka_ 135 YVRQ----LGLPSTFVYAGIYNNNFTSLPYPLFQ--------------MELMPDGTFEWHAPF------DPDIPLPWLDA 190 (350)
T ss_dssp HHHT----SSSCEEEEEECEEGGGCBSSSCSSCB--------------EEECTTSCEEEEESS------CTTSCEEEECH
T ss_pred HHHh----hccCceeeeeceeecccccccccccc--------------ccccccccceeeecc------cCCCcceEEEe
Confidence 7665 68999999999988753221110000 000111111123333 56677888886
Q ss_pred -HHHHHHHHHHHHhcC-CCCccEEEecCCCcccHHHHHHHHHHHcCCCceeEecCC
Q 015080 310 -NDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR 363 (413)
Q Consensus 310 -~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~ 363 (413)
+|+++++..++.... ...+++|++++ +.+|+.|+++.+.+.+|++.++..+|.
T Consensus 191 ~~Dva~~v~~~l~~~~~~~~G~~~~~~g-~~~T~~eia~~l~~~~G~~v~~~~vp~ 245 (350)
T d1xgka_ 191 EHDVGPALLQIFKDGPQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPK 245 (350)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSS
T ss_pred HHHHHHHHHHHHhCChhhcCCeEEEEeC-CcCCHHHHHHHHHHHHCCcceEEECCH
Confidence 899999999987532 21347999975 679999999999999999998877764
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=8.2e-22 Score=177.62 Aligned_cols=219 Identities=15% Similarity=0.140 Sum_probs=151.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.++| |++|||||+++||.++|++|+++|++|++++|+....++. .+++ ........+|+.+.+.+++....
T Consensus 2 slkG-KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~---~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (248)
T d2o23a1 2 SVKG-LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQ---AKKL---GNNCVFAPADVTSEKDVQTALALAK 74 (248)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHH---HHHH---CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHH---HHHh---CCCcccccccccccccccccccccc
Confidence 4668 9999999999999999999999999999999865544433 3333 35788899999998877665543
Q ss_pred ---CCCcEEEEcCcccCccC----------CcCChHHHHHHHHHHHHHHHHHHHH----c------CCCEEEEeccceec
Q 015080 144 ---NAFDAVMHFAAVAYVGE----------STLDPLKYYHNITSNTLVVLESMAR----H------GVDTLIYSSTCATY 200 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~----------~~~~~~~~~~~n~~~~~~ll~~~~~----~------~~~~iV~~SS~~~~ 200 (413)
...|.+++++++..... ..+..+..+++|+.++.++.+++.. . +.++||++||...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~ 154 (248)
T d2o23a1 75 GKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAF 154 (248)
T ss_dssp HHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH
T ss_pred cccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhc
Confidence 67899999987654322 1123445688999886666655533 2 35689999998765
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHH
Q 015080 201 GEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGAC 277 (413)
Q Consensus 201 ~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (413)
... ....+|+.||++.+.+++.++.| +||++++|.||.+..+... .+....
T Consensus 155 ~~~-----------~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~---------------~~~~~~ 208 (248)
T d2o23a1 155 EGQ-----------VGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLT---------------SLPEKV 208 (248)
T ss_dssp HCC-----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC------------------------
T ss_pred cCC-----------CCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhh---------------cCCHHH
Confidence 322 23678999999999999999988 6899999999998765421 111122
Q ss_pred HHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEe
Q 015080 278 FDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNV 333 (413)
Q Consensus 278 ~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni 333 (413)
.+...+. +++. ..+...+|+|+++++++.. .--.|++.+|
T Consensus 209 ~~~~~~~---~pl~------------~R~g~peevA~~v~fL~s~-~~itGq~I~v 248 (248)
T d2o23a1 209 CNFLASQ---VPFP------------SRLGDPAEYAHLVQAIIEN-PFLNGEVIRL 248 (248)
T ss_dssp -CHHHHT---CSSS------------CSCBCHHHHHHHHHHHHHC-TTCCSCEEEE
T ss_pred HHHHHhc---CCCC------------CCCcCHHHHHHHHHHHHhC-CCCCceEeEC
Confidence 2222221 1111 1356889999999998863 2223455543
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.89 E-value=1.8e-22 Score=182.23 Aligned_cols=172 Identities=16% Similarity=0.135 Sum_probs=123.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----- 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 143 (413)
|+||||||+++||.++|++|+++|+ +|++.+|+..+.++ +++.. +.++.++.+|++|.++++++++.
T Consensus 4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~----l~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 77 (250)
T d1yo6a1 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE----LKSIK--DSRVHVLPLTVTCDKSLDTFVSKVGEIV 77 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHH----HHTCC--CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHH----HHHhh--CCceEEEEEecCCHHHHHHHHHHHHHHh
Confidence 8999999999999999999999996 67777765433322 22221 35799999999999998877754
Q ss_pred --CCCcEEEEcCcccCc-cC-Cc---CChHHHHHHHHHHHH----HHHHHHHHcC-----------CCEEEEeccceecC
Q 015080 144 --NAFDAVMHFAAVAYV-GE-ST---LDPLKYYHNITSNTL----VVLESMARHG-----------VDTLIYSSTCATYG 201 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~-~~-~~---~~~~~~~~~n~~~~~----~ll~~~~~~~-----------~~~iV~~SS~~~~~ 201 (413)
.++|+||||||+... .. .. ++.+..+++|+.|+. .+++.|++.+ .++++++||...+-
T Consensus 78 ~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~ 157 (250)
T d1yo6a1 78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSI 157 (250)
T ss_dssp GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCS
T ss_pred CCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccc
Confidence 359999999998643 22 12 234457889999954 4566665531 35788888865442
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceec
Q 015080 202 EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIG 252 (413)
Q Consensus 202 ~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G 252 (413)
.... ...+..+..+|+.||++...+++.++.+ .||++++|.||.|-.
T Consensus 158 ~~~~----~~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T 207 (250)
T d1yo6a1 158 TDNT----SGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQT 207 (250)
T ss_dssp TTCC----STTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC--
T ss_pred cCCc----ccccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCC
Confidence 1111 1122334557999999999999999987 689999999998764
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=7.6e-22 Score=179.87 Aligned_cols=172 Identities=15% Similarity=0.125 Sum_probs=133.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc--
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE-- 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 143 (413)
.++| |++||||||++||+++|++|+++|++|++++|+..+.+++.+.+.... +..+..+.+|+++.+.+....+.
T Consensus 11 ~L~G-K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~ 87 (269)
T d1xu9a_ 11 MLQG-KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG--AASAHYIAGTMEDMTFAEQFVAQAG 87 (269)
T ss_dssp GGTT-CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT--CSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCC-CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh--cccchhhhhhhhhHHHHHHHHHHHH
Confidence 3678 999999999999999999999999999999986555444444433332 35788899999999888766654
Q ss_pred ---CCCcEEEEcCcccCccCCcC----ChHHHHHHHHHH----HHHHHHHHHHcCCCEEEEeccceecCCCCCCCCCCCC
Q 015080 144 ---NAFDAVMHFAAVAYVGESTL----DPLKYYHNITSN----TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET 212 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~~~----~~~~~~~~n~~~----~~~ll~~~~~~~~~~iV~~SS~~~~~~~~~~~~~e~~ 212 (413)
..+|+++||||........+ +....+++|+.+ ++.+++.|++.+ +++|++||.+.+-.
T Consensus 88 ~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~-G~ii~isS~~~~~~---------- 156 (269)
T d1xu9a_ 88 KLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN-GSIVVVSSLAGKVA---------- 156 (269)
T ss_dssp HHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEGGGTSC----------
T ss_pred HHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcC-CcceEeccchhcCC----------
Confidence 67999999999865544322 233467889888 566777776654 79999999776532
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh-----CCCcEEEEeecceec
Q 015080 213 PQAPINPYGKAKKMAEDIILDFSKN-----SDMAVMILRYFNVIG 252 (413)
Q Consensus 213 ~~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~lrp~~v~G 252 (413)
.+...+|+.||++.+.+++.++.| .||+++.+.||.|-.
T Consensus 157 -~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T 200 (269)
T d1xu9a_ 157 -YPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDT 200 (269)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCC
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCC
Confidence 223679999999999999999876 469999999998865
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2e-22 Score=184.54 Aligned_cols=182 Identities=16% Similarity=0.064 Sum_probs=134.1
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---- 143 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 143 (413)
||+.+|||||+++||.++|++|+++ |++|++++|+..+.+++.+.+++. +.++.+++||++|.+++++++++
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dvs~~~sv~~~~~~~~~~ 78 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE---GLSPRFHQLDIDDLQSIRALRDFLRKE 78 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEEEecCCHHHHHHHHHHHHHh
Confidence 5466799999999999999999986 899999998766655555555543 46789999999999999887765
Q ss_pred -CCCcEEEEcCcccCccCCcCC----hHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCC-CCC---------
Q 015080 144 -NAFDAVMHFAAVAYVGESTLD----PLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEP-EKM--------- 206 (413)
Q Consensus 144 -~~~dvvi~~Ag~~~~~~~~~~----~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~-~~~--------- 206 (413)
.++|+||||||+.......+. .+..+++|+.|+..+++.+... ..++||++||....... ...
T Consensus 79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~ 158 (275)
T d1wmaa1 79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRS 158 (275)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHC
T ss_pred cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhcc
Confidence 689999999998765443332 3346889999977777766542 23699999996543110 000
Q ss_pred -C-------------------CCCCCCCCCCChhHHHHHHHHHHHHHHHhh-------CCCcEEEEeecceecC
Q 015080 207 -P-------------------ITEETPQAPINPYGKAKKMAEDIILDFSKN-------SDMAVMILRYFNVIGS 253 (413)
Q Consensus 207 -~-------------------~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~-------~gi~~~~lrp~~v~G~ 253 (413)
. .....+..+...|+.||++...+++.++.+ .|++++++.||.|-.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~ 232 (275)
T d1wmaa1 159 ETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTD 232 (275)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCST
T ss_pred cccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCC
Confidence 0 000113344668999999999988776655 3899999999998754
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.87 E-value=2.1e-21 Score=173.47 Aligned_cols=201 Identities=14% Similarity=0.136 Sum_probs=141.4
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-----
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----- 143 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 143 (413)
+ |+||||||+|+||+++|+.|+++|++|+++++...... .....+.+|..+.++.+.+...
T Consensus 2 g-K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (236)
T d1dhra_ 2 A-RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-------------SASVIVKMTDSFTEQADQVTAEVGKLL 67 (236)
T ss_dssp C-CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-------------SEEEECCCCSCHHHHHHHHHHHHHHHH
T ss_pred C-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc-------------cccceeecccCcHHHHHHHHHHHHHHh
Confidence 5 99999999999999999999999999999987554322 3344556777776665543322
Q ss_pred --CCCcEEEEcCcccCcc-CCc----CChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCC
Q 015080 144 --NAFDAVMHFAAVAYVG-EST----LDPLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQ 214 (413)
Q Consensus 144 --~~~dvvi~~Ag~~~~~-~~~----~~~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~ 214 (413)
.++|+||||||..... ... +..+..+++|+.++.++..++... +.++||++||.+.+...+
T Consensus 68 ~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~---------- 137 (236)
T d1dhra_ 68 GDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP---------- 137 (236)
T ss_dssp TTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT----------
T ss_pred CCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCcc----------
Confidence 4699999999964332 222 223446788998876666655542 347999999987654322
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh-----CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccccee
Q 015080 215 APINPYGKAKKMAEDIILDFSKN-----SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLK 289 (413)
Q Consensus 215 ~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 289 (413)
...+|+.||++.+.+++.++.| .|++++.|.||.|..|. .+.....
T Consensus 138 -~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~-----------------------~~~~~~~----- 188 (236)
T d1dhra_ 138 -GMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM-----------------------NRKSMPE----- 188 (236)
T ss_dssp -TBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH-----------------------HHHHSTT-----
T ss_pred -CCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCc-----------------------chhhCcc-----
Confidence 2678999999999999999877 37999999999987641 1111111
Q ss_pred EecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEe
Q 015080 290 VKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNV 333 (413)
Q Consensus 290 ~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni 333 (413)
...-.|+..+|+|+.+..++.... ...|..+.+
T Consensus 189 -----------~~~~~~~~pe~va~~~~~l~s~~~~~i~G~~i~v 222 (236)
T d1dhra_ 189 -----------ADFSSWTPLEFLVETFHDWITGNKRPNSGSLIQV 222 (236)
T ss_dssp -----------SCGGGSEEHHHHHHHHHHHHTTTTCCCTTCEEEE
T ss_pred -----------chhhcCCCHHHHHHHHHHHhCCCccCCCCCeEEE
Confidence 111246778999999999887433 233455554
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.1e-20 Score=171.27 Aligned_cols=228 Identities=13% Similarity=0.069 Sum_probs=158.2
Q ss_pred CCCceEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG--~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+.+ |+||||||+| +||.++|+.|+++|++|++.+|+.+..+.+.+.... ......+.+|+++..++.+.+++
T Consensus 3 L~g-K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 77 (258)
T d1qsga_ 3 LSG-KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQ----LGSDIVLQCDVAEDASIDTMFAEL 77 (258)
T ss_dssp TTT-CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHH----TTCCCEEECCTTCHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhh----cCCcceeecccchHHHHHHHHHHh
Confidence 567 9999999998 899999999999999999999864433322222222 35677889999999988776654
Q ss_pred ----CCCcEEEEcCcccCccCCcC-----C----hHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGESTL-----D----PLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~~~~-----~----~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~ 208 (413)
..+|++||||+......... . ....+++|+.+...++.++... +.+.||++||.....
T Consensus 78 ~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~------- 150 (258)
T d1qsga_ 78 GKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER------- 150 (258)
T ss_dssp HTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-------
T ss_pred hhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhcc-------
Confidence 67899999998764433211 1 1224556666666677666543 345788889866432
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
+.+....|+.||++.+.+++.++.+ +||++++|+||.|..+..... ..............
T Consensus 151 ----~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~-------------~~~~~~~~~~~~~~ 213 (258)
T d1qsga_ 151 ----AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI-------------KDFRKMLAHCEAVT 213 (258)
T ss_dssp ----BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS-------------TTHHHHHHHHHHHS
T ss_pred ----CCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeeccccccccccccccc-------------chhhhHHHHHHhCC
Confidence 2223678999999999999999988 689999999999987653210 11122233332222
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhc-CCCCccEEEecCCCcc
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKGR 339 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~yni~~~~~~ 339 (413)
| + ..+...+|+|+++.+++... ..-.++++.+.+|.++
T Consensus 214 p-l---------------~R~~~peeia~~v~fL~s~~s~~itG~~i~vDGG~~i 252 (258)
T d1qsga_ 214 P-I---------------RRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSI 252 (258)
T ss_dssp T-T---------------SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGGG
T ss_pred C-C---------------CCCcCHHHHHHHHHHHhCchhcCccCceEEECcCHHH
Confidence 2 1 13678899999999999643 2345679999887654
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.86 E-value=6.5e-21 Score=175.16 Aligned_cols=228 Identities=15% Similarity=0.080 Sum_probs=151.7
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC-CchhhhhhhhhcCC---------------CCceEEEEccCCC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG-NIGAVKVLQELFPE---------------PGRLQFIYADLGD 133 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~---------------~~~~~~~~~Dl~d 133 (413)
|..+|||||+++||+++|+.|+++|++|++.++.... .+++.+.+.+..+. ...+....+|+++
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~ 81 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTL 81 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCC
Confidence 3689999999999999999999999999988763322 22233344333221 1123335567999
Q ss_pred HHHHHHHhhc-----CCCcEEEEcCcccCccCCcCCh------------------HHHHHHHHHHHHHHHHHHHH-----
Q 015080 134 AKAVNKFFSE-----NAFDAVMHFAAVAYVGESTLDP------------------LKYYHNITSNTLVVLESMAR----- 185 (413)
Q Consensus 134 ~~~~~~~~~~-----~~~dvvi~~Ag~~~~~~~~~~~------------------~~~~~~n~~~~~~ll~~~~~----- 185 (413)
.+++++++++ +++|+||||||+..+....+.. ...+.+|+.++..+.+++.+
T Consensus 82 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 161 (284)
T d1e7wa_ 82 FTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGT 161 (284)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhh
Confidence 9999887755 7899999999987554322211 12466777777666665432
Q ss_pred -----cCCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCC
Q 015080 186 -----HGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEG 257 (413)
Q Consensus 186 -----~~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~ 257 (413)
.+.+++|+++|..... +.....+|+.||++.+.+++.++.+ +||++++|.||.+-...
T Consensus 162 ~~~~~~~~~~ii~~~s~~~~~-----------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~~--- 227 (284)
T d1e7wa_ 162 PAKHRGTNYSIINMVDAMTNQ-----------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD--- 227 (284)
T ss_dssp CGGGSCSCEEEEEECCTTTTS-----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG---
T ss_pred HHHhcCCCCcccccccccccC-----------CccceeeeccccccchhhhHHHHHHhCCccccccccccccccccc---
Confidence 2345788888865432 2233678999999999999999988 68999999999643221
Q ss_pred CCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 258 RLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
.+.+...+......| +. ..+...+|+|+++++++.... --.|+++.+.+|
T Consensus 228 --------------~~~~~~~~~~~~~~p---l~------------~R~~~peeiA~~v~fL~S~~s~~itG~~i~VDGG 278 (284)
T d1e7wa_ 228 --------------DMPPAVWEGHRSKVP---LY------------QRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGG 278 (284)
T ss_dssp --------------GSCHHHHHHHHTTCT---TT------------TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --------------cCCHHHHHHHHhcCC---CC------------CCCCCHHHHHHHHHHHhCchhcCccCCeEEECcC
Confidence 233344444444322 11 135688999999999887443 235689999888
Q ss_pred Cccc
Q 015080 337 KGRS 340 (413)
Q Consensus 337 ~~~s 340 (413)
.+++
T Consensus 279 ~sl~ 282 (284)
T d1e7wa_ 279 YSLT 282 (284)
T ss_dssp GGGC
T ss_pred hhcc
Confidence 7654
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.85 E-value=2.3e-20 Score=166.51 Aligned_cols=158 Identities=17% Similarity=0.179 Sum_probs=116.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHh-------hc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFF-------SE 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------~~ 143 (413)
.+||||||+|+||.+++++|+++|++|++++|...... .....+.+|+.+.+...... +.
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-------------DSNILVDGNKNWTEQEQSILEQTASSLQG 69 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-------------SEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcc-------------cccceeccccCchhHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999998654321 23445567777666544332 22
Q ss_pred CCCcEEEEcCcccCccC-CcCC----hHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccceecCCCCCCCCCCCCCCCC
Q 015080 144 NAFDAVMHFAAVAYVGE-STLD----PLKYYHNITSNTLVVLESMARH--GVDTLIYSSTCATYGEPEKMPITEETPQAP 216 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~~~-~~~~----~~~~~~~n~~~~~~ll~~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~ 216 (413)
.++|+||||||+..... ..++ .+..+++|+.++..+..++... +.++||++||...+...+ .
T Consensus 70 g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~~~-----------~ 138 (235)
T d1ooea_ 70 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTP-----------S 138 (235)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT-----------T
T ss_pred CCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCCcc-----------c
Confidence 67999999999754322 2222 3345788998866655555442 236999999977654322 3
Q ss_pred CChhHHHHHHHHHHHHHHHhh-----CCCcEEEEeecceec
Q 015080 217 INPYGKAKKMAEDIILDFSKN-----SDMAVMILRYFNVIG 252 (413)
Q Consensus 217 ~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~lrp~~v~G 252 (413)
..+|+.||++.+.+++.++.| .+++++.+.||.+-.
T Consensus 139 ~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T 179 (235)
T d1ooea_ 139 MIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDT 179 (235)
T ss_dssp BHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCC
T ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcC
Confidence 678999999999999999877 367899999998754
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.83 E-value=1.8e-19 Score=164.61 Aligned_cols=227 Identities=12% Similarity=0.047 Sum_probs=149.7
Q ss_pred CCCceEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc-
Q 015080 67 EEGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE- 143 (413)
Q Consensus 67 ~~~~k~vlITGasG--~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~- 143 (413)
+++ |++|||||+| +||.++|++|+++|++|++++|+.. .++..+.+.+. .....++.+|+++.+++.+++++
T Consensus 3 L~g-K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l~~~---~~~~~~~~~d~~~~~~~~~~~~~~ 77 (274)
T d2pd4a1 3 LKG-KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQE---LNSPYVYELDVSKEEHFKSLYNSV 77 (274)
T ss_dssp TTT-CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHhh---CCceeEeeecccchhhHHHHHHHH
Confidence 567 9999999876 8999999999999999999998633 33333333333 35677889999999998877755
Q ss_pred ----CCCcEEEEcCcccCccC----Cc-CChHHHHHHHH---HHHHHHHHHHHHc-C-CCEEEEeccceecCCCCCCCCC
Q 015080 144 ----NAFDAVMHFAAVAYVGE----ST-LDPLKYYHNIT---SNTLVVLESMARH-G-VDTLIYSSTCATYGEPEKMPIT 209 (413)
Q Consensus 144 ----~~~dvvi~~Ag~~~~~~----~~-~~~~~~~~~n~---~~~~~ll~~~~~~-~-~~~iV~~SS~~~~~~~~~~~~~ 209 (413)
.++|++|||+|...... .. .........+. .....+...+.+. + ...++++|+.+.....
T Consensus 78 ~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~------ 151 (274)
T d2pd4a1 78 KKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYM------ 151 (274)
T ss_dssp HHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC------
T ss_pred HHHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccccc------
Confidence 68999999999754322 11 22222222222 2233444444332 2 2345556665544322
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhcccc
Q 015080 210 EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIA 286 (413)
Q Consensus 210 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (413)
.....|+.+|.+.+.+++.++.+ .||++++|.||.+..+..... .-............+
T Consensus 152 -----~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~p 213 (274)
T d2pd4a1 152 -----AHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGI-------------ADFRMILKWNEINAP 213 (274)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGS-------------TTHHHHHHHHHHHST
T ss_pred -----ccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCcccccc-------------CchHHHHHHHhhhhh
Confidence 22668999999999999999888 789999999999887642210 001122222222111
Q ss_pred ceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCc
Q 015080 287 GLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 338 (413)
Q Consensus 287 ~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~ 338 (413)
...+...+|+|+++++++.... .-.++++.+.+|.+
T Consensus 214 ----------------~~r~~~pedIA~~v~fL~S~~s~~itG~~i~vDGG~~ 250 (274)
T d2pd4a1 214 ----------------LRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYH 250 (274)
T ss_dssp ----------------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ----------------ccCCcCHHHHHHHHHHHhChhhCCCcCceEEECCChh
Confidence 1245789999999999887532 23567999987764
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=9.5e-20 Score=163.11 Aligned_cols=211 Identities=16% Similarity=0.136 Sum_probs=148.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc----CCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE----NAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~~~ 146 (413)
|++|||||+++||+++|++|+++|++|++++|+... .+...+++|+++......+... ...
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~---------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 66 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG---------------EDLIYVEGDVTREEDVRRAVARAQEEAPL 66 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS---------------SSSEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc---------------ccceEeeccccchhhhHHHHHhhhccccc
Confidence 899999999999999999999999999999975432 3567788999998877766543 556
Q ss_pred cEEEEcCcccCccC--------CcCChHHHHHHHHHHHHHHHHHHH----------HcCCCEEEEeccceecCCCCCCCC
Q 015080 147 DAVMHFAAVAYVGE--------STLDPLKYYHNITSNTLVVLESMA----------RHGVDTLIYSSTCATYGEPEKMPI 208 (413)
Q Consensus 147 dvvi~~Ag~~~~~~--------~~~~~~~~~~~n~~~~~~ll~~~~----------~~~~~~iV~~SS~~~~~~~~~~~~ 208 (413)
+.++++++...... ..+..+..+++|..+...++..+. +.+.++||++||...+....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~---- 142 (241)
T d1uaya_ 67 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQI---- 142 (241)
T ss_dssp EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCT----
T ss_pred cchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCCC----
Confidence 67777776533211 112334567888888655554432 23457999999977653322
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHhccc
Q 015080 209 TEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII 285 (413)
Q Consensus 209 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (413)
...+|+.+|++.+.+++.++.| +||++++|.||.|-.+... ..............
T Consensus 143 -------~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~---------------~~~~~~~~~~~~~~ 200 (241)
T d1uaya_ 143 -------GQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQ---------------GLPEKAKASLAAQV 200 (241)
T ss_dssp -------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHH---------------TSCHHHHHHHHTTC
T ss_pred -------CchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccc---------------hhhhhHHHHHHhcC
Confidence 2678999999999999999988 7899999999998765311 11111122222211
Q ss_pred cceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCCCCccEEEecCCCc
Q 015080 286 AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKG 338 (413)
Q Consensus 286 ~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~yni~~~~~ 338 (413)
+ .. ..+...+|+|+++++++.. .--.|+++.+.+|-.
T Consensus 201 ~---~~------------~R~g~pedvA~~v~fL~s~-~~iTG~~i~VDGG~~ 237 (241)
T d1uaya_ 201 P---FP------------PRLGRPEEYAALVLHILEN-PMLNGEVVRLDGALR 237 (241)
T ss_dssp C---SS------------CSCCCHHHHHHHHHHHHHC-TTCCSCEEEESTTCC
T ss_pred C---CC------------CCCcCHHHHHHHHHHHHhC-CCCCCCEEEECCccc
Confidence 1 11 1356789999999998873 334568999977643
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.82 E-value=6.4e-19 Score=160.04 Aligned_cols=224 Identities=16% Similarity=0.129 Sum_probs=145.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCC-chhhhhhhhhcCCCCceEEEEccCCC----HHHHHHHhhc--
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN-IGAVKVLQELFPEPGRLQFIYADLGD----AKAVNKFFSE-- 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d----~~~~~~~~~~-- 143 (413)
.++|||||+++||.++|+.|+++|++|++++|+.++. +++.+.+.+... ..+..+.+|+.+ .+.+.++++.
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA--GSAVLCKGDLSLSSSLLDCCEDIIDCSF 79 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSSTTHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcC--CceEEEecccccchhHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999754432 233444444322 466667766654 3444444332
Q ss_pred ---CCCcEEEEcCcccCccCCcCC---------------hHHHHHHHHHHHHHHHHHHHH---------cCCCEEEEecc
Q 015080 144 ---NAFDAVMHFAAVAYVGESTLD---------------PLKYYHNITSNTLVVLESMAR---------HGVDTLIYSST 196 (413)
Q Consensus 144 ---~~~dvvi~~Ag~~~~~~~~~~---------------~~~~~~~n~~~~~~ll~~~~~---------~~~~~iV~~SS 196 (413)
+++|++|||||+..+...... ....+..|..+.......... .....++.+||
T Consensus 80 ~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (266)
T d1mxha_ 80 RAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCD 159 (266)
T ss_dssp HHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECC
T ss_pred HHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhh
Confidence 789999999998654332110 112334444443333333322 12346777777
Q ss_pred ceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccch
Q 015080 197 CATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRI 273 (413)
Q Consensus 197 ~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~ 273 (413)
....... +...+|+.||++.+.+++.++.+ +||+++.|.||.+..+. ..
T Consensus 160 ~~~~~~~-----------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~-----------------~~ 211 (266)
T d1mxha_ 160 AMTDLPL-----------PGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPP-----------------AM 211 (266)
T ss_dssp GGGGSCC-----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCS-----------------SS
T ss_pred ccccccC-----------cchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccc-----------------cC
Confidence 6554322 23778999999999999999887 68999999999987653 12
Q ss_pred HHHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcCC-CCccEEEecCCCcc
Q 015080 274 SGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGR 339 (413)
Q Consensus 274 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~yni~~~~~~ 339 (413)
.....+......| + + +-+...+|+|+++++++..... -.|+++.+.+|..+
T Consensus 212 ~~~~~~~~~~~~p-l-----------~---r~~~~peeva~~v~fL~s~~s~~itG~~i~vDGG~~l 263 (266)
T d1mxha_ 212 PQETQEEYRRKVP-L-----------G---QSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGLIL 263 (266)
T ss_dssp CHHHHHHHHTTCT-T-----------T---SCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CHHHHHHHHhcCC-C-----------C---CCCCCHHHHHHHHHHHhCchhCCccCCeEEECccHhh
Confidence 2233344433322 1 0 2246789999999999975432 35579999877554
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.79 E-value=5.8e-19 Score=160.57 Aligned_cols=240 Identities=12% Similarity=0.031 Sum_probs=147.4
Q ss_pred CCCCceEEEEEcC--CChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc
Q 015080 66 HEEGVTHVLVTGG--AGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 66 ~~~~~k~vlITGa--sG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
.+++ |++||||| +.+||.++|++|+++|++|++.+|+. ++..+.+.+.. +.+...+++|+++.+++..+++.
T Consensus 3 ~l~g-K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~---~~~~~~~~~~~--~~~~~~~~~dv~~~~~~~~~~~~ 76 (268)
T d2h7ma1 3 LLDG-KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR---LRLIQRITDRL--PAKAPLLELDVQNEEHLASLAGR 76 (268)
T ss_dssp TTTT-CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC---HHHHHHHHTTS--SSCCCEEECCTTCHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh---HHHHHHHHHHc--CCceeeEeeecccccccccccch
Confidence 3567 99999995 45799999999999999999987643 33333333322 35678899999999877666543
Q ss_pred --------CCCcEEEEcCcccCccC-----CcCC-hH---HHHHHHHHHHHHHHHHHHHc-CCCEEEEeccceecCCCCC
Q 015080 144 --------NAFDAVMHFAAVAYVGE-----STLD-PL---KYYHNITSNTLVVLESMARH-GVDTLIYSSTCATYGEPEK 205 (413)
Q Consensus 144 --------~~~dvvi~~Ag~~~~~~-----~~~~-~~---~~~~~n~~~~~~ll~~~~~~-~~~~iV~~SS~~~~~~~~~ 205 (413)
..+|+++||||...... ..+. .. ..+.+|.............. +...+++++|......
T Consensus 77 v~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~--- 153 (268)
T d2h7ma1 77 VTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA--- 153 (268)
T ss_dssp HHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC---
T ss_pred hhhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccccccccccccccccc---
Confidence 45899999999753221 1122 22 23445555555555554433 2234455554333322
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHHHHh
Q 015080 206 MPITEETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAAR 282 (413)
Q Consensus 206 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (413)
.+....|+.+|++.+.+++.++.+ +||+++.|.||.|-.+......+..... ........+.+...
T Consensus 154 --------~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 222 (268)
T d2h7ma1 154 --------MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGE---EAGAQIQLLEEGWD 222 (268)
T ss_dssp --------CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCH---HHHHHHHHHHHHHH
T ss_pred --------CcccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhh---hhccchHHHHHHHH
Confidence 222678999999999999999988 6899999999998754210000000000 00011112222222
Q ss_pred ccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCCCccc
Q 015080 283 GIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRS 340 (413)
Q Consensus 283 ~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~~~~s 340 (413)
...| -.+.+...+|+|+++.+++.... .-.++++.+.+|.+.+
T Consensus 223 ~~~p---------------l~rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vDGG~~~~ 266 (268)
T d2h7ma1 223 QRAP---------------IGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAHTQ 266 (268)
T ss_dssp HHCT---------------TCCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTGGGC
T ss_pred hcCC---------------CCCCCCCHHHHHHHHHHHhCchhcCccCCEEEECcCcccc
Confidence 2111 01235678999999999986432 2356789998776543
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.77 E-value=6.3e-18 Score=155.95 Aligned_cols=235 Identities=11% Similarity=0.011 Sum_probs=144.5
Q ss_pred CCCCCCceEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhh------hhhcCCC--Cc-eEEEEcc--
Q 015080 64 SQHEEGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVL------QELFPEP--GR-LQFIYAD-- 130 (413)
Q Consensus 64 ~~~~~~~k~vlITGasG--~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~--~~-~~~~~~D-- 130 (413)
++++++ |++|||||+| +||.++|++|+++|++|++.+|+........... ....... .. -....+|
T Consensus 3 ~~~L~g-K~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (297)
T d1d7oa_ 3 PIDLRG-KRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAV 81 (297)
T ss_dssp CCCCTT-CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTT
T ss_pred CcCCCC-CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 346788 9999999887 9999999999999999999886432111100000 0000000 01 1122222
Q ss_pred C------------------CCHHHHHHHhh----c-CCCcEEEEcCcccCc--cC----CcCChHHHHHHHHHHHHHHHH
Q 015080 131 L------------------GDAKAVNKFFS----E-NAFDAVMHFAAVAYV--GE----STLDPLKYYHNITSNTLVVLE 181 (413)
Q Consensus 131 l------------------~d~~~~~~~~~----~-~~~dvvi~~Ag~~~~--~~----~~~~~~~~~~~n~~~~~~ll~ 181 (413)
+ ++..+++++++ + .++|+||||||.... .. ..++....+++|+.+...++.
T Consensus 82 ~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~ 161 (297)
T d1d7oa_ 82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLS 161 (297)
T ss_dssp CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhh
Confidence 1 12222222222 2 789999999997431 11 222345578899999888887
Q ss_pred HHHHc--CCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh----CCCcEEEEeecceecCCC
Q 015080 182 SMARH--GVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN----SDMAVMILRYFNVIGSDP 255 (413)
Q Consensus 182 ~~~~~--~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~G~~~ 255 (413)
++... ..+.++.+++.+.... .......|+.+|.+.+.+++.++.+ +||+++.|.||.+..+..
T Consensus 162 ~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T~~~ 231 (297)
T d1d7oa_ 162 HFLPIMNPGGASISLTYIASERI----------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAA 231 (297)
T ss_dssp HHGGGEEEEEEEEEEECGGGTSC----------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCS
T ss_pred HHHHHhhcCCcceeeeehhhccc----------ccccccceecccccccccccccchhccccceEEecccccccccchhh
Confidence 77654 2345666666443211 1123567999999999988877655 589999999999987753
Q ss_pred CCCCCCCCCcccccccchHHHHHHHHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEec
Q 015080 256 EGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVG 334 (413)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~ 334 (413)
... ...+...+...+..| + ..+...+|+|+++++++.... .-.++++.+.
T Consensus 232 ~~~-------------~~~~~~~~~~~~~~P-l---------------gR~~~peevA~~v~fL~S~~a~~itGq~i~vD 282 (297)
T d1d7oa_ 232 KAI-------------GFIDTMIEYSYNNAP-I---------------QKTLTADEVGNAAAFLVSPLASAITGATIYVD 282 (297)
T ss_dssp SCC-------------SHHHHHHHHHHHHSS-S---------------CCCBCHHHHHHHHHHHTSGGGTTCCSCEEEES
T ss_pred hhc-------------cCCHHHHHHHHhCCC-C---------------CCCCCHHHHHHHHHHHhCchhcCCcCceEEEC
Confidence 211 233344444443322 1 245789999999999986432 2356799997
Q ss_pred CCCc
Q 015080 335 TGKG 338 (413)
Q Consensus 335 ~~~~ 338 (413)
+|.+
T Consensus 283 GG~s 286 (297)
T d1d7oa_ 283 NGLN 286 (297)
T ss_dssp TTGG
T ss_pred cCHh
Confidence 7743
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.74 E-value=4e-17 Score=152.52 Aligned_cols=172 Identities=10% Similarity=-0.032 Sum_probs=113.4
Q ss_pred eEEEEEc--CCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhh---------hcCCCCceEEEEc----------
Q 015080 71 THVLVTG--GAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQE---------LFPEPGRLQFIYA---------- 129 (413)
Q Consensus 71 k~vlITG--asG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---------~~~~~~~~~~~~~---------- 129 (413)
|++|||| ++++||.++|+.|+++|++|++.++.............+ ............+
T Consensus 3 kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (329)
T d1uh5a_ 3 DICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTANDI 82 (329)
T ss_dssp CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGGGC
T ss_pred cEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhccc
Confidence 8999999 567999999999999999999987643211111110000 0000112223333
Q ss_pred ----------cCCCHHHHHHHhhc-----CCCcEEEEcCcccCcc--C----CcCChHHHHHHHHHHHHHHHHHHHHc--
Q 015080 130 ----------DLGDAKAVNKFFSE-----NAFDAVMHFAAVAYVG--E----STLDPLKYYHNITSNTLVVLESMARH-- 186 (413)
Q Consensus 130 ----------Dl~d~~~~~~~~~~-----~~~dvvi~~Ag~~~~~--~----~~~~~~~~~~~n~~~~~~ll~~~~~~-- 186 (413)
|+++.++++++++. .++|++|||||..... . ..++....+++|+.++..+++++...
T Consensus 83 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~m~ 162 (329)
T d1uh5a_ 83 DEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIMK 162 (329)
T ss_dssp CHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEE
T ss_pred chhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhhcc
Confidence 45555545544433 7899999999965321 1 22345557888988877766666543
Q ss_pred CCCEEEEeccceecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh----CCCcEEEEeecceec
Q 015080 187 GVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN----SDMAVMILRYFNVIG 252 (413)
Q Consensus 187 ~~~~iV~~SS~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~G 252 (413)
..++||++||.+.....+ .....|+.+|++.+.+++.++.| +||+++.|.||.|-.
T Consensus 163 ~~GsIv~iss~~~~~~~p----------~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T 222 (329)
T d1uh5a_ 163 PQSSIISLTYHASQKVVP----------GYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKS 222 (329)
T ss_dssp EEEEEEEEECGGGTSCCT----------TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_pred cccccccceeehhccccc----------ccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcccc
Confidence 346899999866542211 12457999999999999998876 489999999998754
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.73 E-value=1.8e-16 Score=142.78 Aligned_cols=216 Identities=11% Similarity=0.053 Sum_probs=132.6
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc------
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE------ 143 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~------ 143 (413)
||+||||||+++||.++|++|+++|++|++++|+..+ ..+|+.+.+.......+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~--------------------~~~d~~~~~~~~~~~~~~~~~~~ 60 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE--------------------VIADLSTAEGRKQAIADVLAKCS 60 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS--------------------EECCTTSHHHHHHHHHHHHTTCT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH--------------------HHHHhcCHHHHHHHHHHHHHHhC
Confidence 7999999999999999999999999999999874321 23678877766544322
Q ss_pred CCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHH----HHHHHcCCCEEEEeccceecCCC-CCCCCC---------
Q 015080 144 NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVL----ESMARHGVDTLIYSSTCATYGEP-EKMPIT--------- 209 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll----~~~~~~~~~~iV~~SS~~~~~~~-~~~~~~--------- 209 (413)
..+|+++||||+... .+.......+|..+...+. +...+........+++....... ...+..
T Consensus 61 ~~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 137 (257)
T d1fjha_ 61 KGMDGLVLCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEA 137 (257)
T ss_dssp TCCSEEEECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHH
T ss_pred CCCcEEEEcCCCCCc---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcEE
Confidence 469999999997543 3345566677777755544 44444455566666654322110 000000
Q ss_pred -------CCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCcEEEEeecceecCCCCCCCCCCCCcccccccchHHHHHH
Q 015080 210 -------EETPQAPINPYGKAKKMAEDIILDFSKN---SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFD 279 (413)
Q Consensus 210 -------e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (413)
......+..+|+.||++.+.+++.++.+ +||+++.|.||.+-.|.....+. -+....
T Consensus 138 ~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~-------------~~~~~~ 204 (257)
T d1fjha_ 138 KARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQ-------------DPRYGE 204 (257)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC------------------------------
T ss_pred EEeeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcC-------------CHHHHH
Confidence 0001112346999999999999999887 78999999999997764221100 000011
Q ss_pred HHhccccceeEecccccCCCCceeeecccHHHHHHHHHHHHHhcC-CCCccEEEecCC
Q 015080 280 AARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTG 336 (413)
Q Consensus 280 ~~~~~~~~i~~~g~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~yni~~~ 336 (413)
...+.. ....-+...+|+|+++++++.... --.|+++.+.+|
T Consensus 205 ~~~~~~---------------~PlgR~g~p~eva~~v~fL~S~~s~~itG~~i~vDGG 247 (257)
T d1fjha_ 205 SIAKFV---------------PPMGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGG 247 (257)
T ss_dssp ----CC---------------CSTTSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHhcC---------------CCCCCCcCHHHHHHHHHHHhCchhCCccCceEEeCCC
Confidence 111100 112246688999999999986432 235578988766
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.45 E-value=9.1e-15 Score=125.34 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=71.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
++.+ |+|+||||+|+||.++++.|+++|++|++++|+..+.+++.+.+.+. ..+.+..+|++|.+++++++ .+
T Consensus 20 ~l~g-K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~--~~ 92 (191)
T d1luaa1 20 SVKG-KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR----FKVNVTAAETADDASRAEAV--KG 92 (191)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH----HTCCCEEEECCSHHHHHHHT--TT
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc----cchhhhhhhcccHHHHHHHh--cC
Confidence 4667 99999999999999999999999999999998766555555555443 35667889999999999999 78
Q ss_pred CcEEEEcCccc
Q 015080 146 FDAVMHFAAVA 156 (413)
Q Consensus 146 ~dvvi~~Ag~~ 156 (413)
+|+||||||+.
T Consensus 93 iDilin~Ag~g 103 (191)
T d1luaa1 93 AHFVFTAGAIG 103 (191)
T ss_dssp CSEEEECCCTT
T ss_pred cCeeeecCccc
Confidence 99999999974
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.31 E-value=9.7e-07 Score=70.56 Aligned_cols=114 Identities=15% Similarity=0.169 Sum_probs=72.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|.|.|+ |.+|+.++..|+.+| .+|+++|++....+.....+.+.............|.. .+ .++|+
T Consensus 6 ~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-------~~--~~adi 75 (146)
T d1ez4a1 6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-------DC--KDADL 75 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-------GG--TTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-------Hh--ccccE
Confidence 78999995 999999999999987 58999987543222222222221111123444555542 13 68899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
||.+||.... ...+..+....|..-.+.+.+.+.+.+.+.++.+.|
T Consensus 76 vvitag~~~~--~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 76 VVITAGAPQK--PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp EEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEEecccccC--CCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 9999996532 233455678889999999999999987665655554
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.29 E-value=5.2e-06 Score=66.04 Aligned_cols=117 Identities=12% Similarity=0.129 Sum_probs=77.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCC--Cchhhhhhhhh-cCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRG--NIGAVKVLQEL-FPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~--~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
|+|.|+||+|.+|+.++..|+.+|. ++.++|+...- .+..+..+.+. ......+.....--.|.+ .+ .+
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~----~l--~~ 74 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLR----II--DE 74 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGG----GG--TT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHH----Hh--cc
Confidence 4699999999999999999999984 89999864211 11112223322 112233333221111222 23 67
Q ss_pred CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Q 015080 146 FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSS 195 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~S 195 (413)
.|+||-+||... ....+..+.++.|..-.+.+.+.+.+.+.+.++.+|
T Consensus 75 aDvVVitAG~~~--~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivVt 122 (145)
T d1hyea1 75 SDVVIITSGVPR--KEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVIT 122 (145)
T ss_dssp CSEEEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECS
T ss_pred ceEEEEeccccc--CCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEEc
Confidence 899999999743 233467788999999999999999988766666554
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.24 E-value=2.8e-06 Score=66.68 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=55.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|+|.|+ |.+|+.+++.|.+.|++|++++.++. ..+.+.+. .+..++.+|.+|++.++++-- ...|.++
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~----~~~~~~~~----~~~~vi~Gd~~~~~~l~~~~i-~~a~~vv 70 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKD----ICKKASAE----IDALVINGDCTKIKTLEDAGI-EDADMYI 70 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHH----CSSEEEESCTTSHHHHHHTTT-TTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChh----hhhhhhhh----hhhhhccCcccchhhhhhcCh-hhhhhhc
Confidence 67999996 99999999999999999999975432 22223221 357789999999998887732 5678888
Q ss_pred Ec
Q 015080 151 HF 152 (413)
Q Consensus 151 ~~ 152 (413)
-+
T Consensus 71 ~~ 72 (132)
T d1lssa_ 71 AV 72 (132)
T ss_dssp EC
T ss_pred cc
Confidence 54
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.19 E-value=4.4e-06 Score=66.41 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=75.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
+|.|+||+|.+|++++..|+.+|. +++++|... .+..+..+.+. ........- ....+..+.+ .+.|+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~--~~~~a~Dl~~~----~~~~~~~~~-~~~~~~~~~~--~~aDiv 72 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHI----ETRATVKGY-LGPEQLPDCL--KGCDVV 72 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTS----SSSCEEEEE-ESGGGHHHHH--TTCSEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc--cchhhHHHhhh----hhhcCCCeE-EcCCChHHHh--CCCCEE
Confidence 689999999999999999998876 799998632 22222222211 111111111 1233344445 689999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
|..||.... ..++..+.++.|....+.+++.+.+.+...+|.+.|
T Consensus 73 Vitag~~~~--~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 73 VIPAGVPRK--PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp EECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EECCCcCCC--CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 999996432 234567789999999999999999997554544444
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.16 E-value=1.4e-05 Score=63.23 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=73.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
++|.|.|+ |.+|+.++..|+.+|. +++++|+.....+.....+.+............+| ++ .+ .+.|+
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~---~~----~~--~~adi 71 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD---YS----DV--KDCDV 71 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C---GG----GG--TTCSE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc---HH----Hh--CCCce
Confidence 56888896 9999999999999976 89999987665554444444322222233333333 22 23 67899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
||-.||.... ..++..+.+..|..-.+.+.+.+.+.+.+-++.+-|
T Consensus 72 vvitag~~~~--~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt 117 (142)
T d1y6ja1 72 IVVTAGANRK--PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117 (142)
T ss_dssp EEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred EEEecccccC--cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence 9999996532 235677788999999999999999986544444433
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=98.05 E-value=1.9e-05 Score=62.39 Aligned_cols=114 Identities=17% Similarity=0.136 Sum_probs=77.1
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCc--hhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNI--GAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
+|.|+||+|.+|++++..|+.+|. +++++|....... .....+.+.............|..+ + .+.|
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~-------~--~~aD 72 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYED-------T--AGSD 72 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGG-------G--TTCS
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHH-------h--hhcC
Confidence 689999999999999999999976 7888875322111 1122232211222344544454322 3 5889
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCE-EEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT-LIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~-iV~~SS 196 (413)
+||-.||.... ..++..+.++.|..-.+.+.+.+.+.+.+. ++.+|.
T Consensus 73 iVvitaG~~~~--~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN 120 (142)
T d1o6za1 73 VVVITAGIPRQ--PGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN 120 (142)
T ss_dssp EEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred EEEEecccccc--cCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence 99999996432 335678899999999999999999986544 444443
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.03 E-value=4.8e-05 Score=60.22 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=74.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHH-C--CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLK-D--SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~-~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
|+|.|+|++|.+|++++..|+. . +.++.++|... ..+..+..+.+.. ....... ..+-.+.++ + .+.|
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~-~~~~~~~-~~~~~~~~~----~--~~aD 71 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIP-TAVKIKG-FSGEDATPA----L--EGAD 71 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSC-SSCEEEE-ECSSCCHHH----H--TTCS
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCc-cccCCcE-EEcCCCccc----c--CCCC
Confidence 5788999999999999998864 3 46899998632 2222222233321 1122222 223334432 3 5789
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
+||.+||.... ...+..+.+..|..-.+.+.+.+.+.+.. .+|.+|.
T Consensus 72 vvvitaG~~~k--~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN 119 (145)
T d2cmda1 72 VVLISAGVRRK--PGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (145)
T ss_dssp EEEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EEEECCCccCC--CCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 99999997532 33456678899999999999999988644 4555554
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.01 E-value=2e-05 Score=62.20 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=75.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
|+|.|.|+ |.+|+.++..|+.++. ++.++|++....+.....+...............|. ++ + .+.|+
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~---~~----~--~~adi 70 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY---AD----L--KGSDV 70 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG---GG----G--TTCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcH---HH----h--cCCCE
Confidence 46777796 9999999999988864 899998654333222222222211113344444442 21 3 67899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
||-+||.... ......+.+..|..-.+.+.+.+.+.+...++.+-|
T Consensus 71 vvitag~~~~--~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 71 VIVAAGVPQK--PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp EEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EEEecccccC--CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 9999997532 234567788889999999999999987655555544
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.97 E-value=2.1e-05 Score=63.18 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=76.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcC-CCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
++|.|.|+ |.+|+.++..|+..+. +++++|.+....+..+..+.+... .+........ ++. ++.+ .+.|+
T Consensus 8 ~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~--~~~---~~~~--~~adi 79 (154)
T d1pzga1 8 KKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE--YSY---EAAL--TGADC 79 (154)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE--CSH---HHHH--TTCSE
T ss_pred CcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEecc--Cch---hhhh--cCCCe
Confidence 78999997 9999999998888875 899988655433333333333211 0111111111 111 2334 68899
Q ss_pred EEEcCcccCccC---CcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 149 VMHFAAVAYVGE---STLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~---~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
|+-.||....+. ...+....+..|..-.+.+++.+.+.+...++.+.|
T Consensus 80 Vvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 80 VIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp EEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred EEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 999999754321 123556678899999999999999987665555554
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.96 E-value=7e-06 Score=67.65 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=54.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+|+|.|| |++|+.+|+.|+++|++|++++|+..+.+...+. .........+..+.......+ ...|.++
T Consensus 3 K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~-------~~~~~~~~~~~~~~~~~~~~i--~~~~~~i 72 (182)
T d1e5qa1 3 KSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG-------VQHSTPISLDVNDDAALDAEV--AKHDLVI 72 (182)
T ss_dssp CEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTT-------CTTEEEEECCTTCHHHHHHHH--TTSSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhc-------ccccccccccccchhhhHhhh--hccceeE
Confidence 89999986 9999999999999999999998765433322221 244556667878888888877 5678877
Q ss_pred EcC
Q 015080 151 HFA 153 (413)
Q Consensus 151 ~~A 153 (413)
.+.
T Consensus 73 ~~~ 75 (182)
T d1e5qa1 73 SLI 75 (182)
T ss_dssp ECS
T ss_pred eec
Confidence 554
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.96 E-value=2e-05 Score=62.81 Aligned_cols=114 Identities=16% Similarity=0.227 Sum_probs=76.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcC-CCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
++|.|+|| |.+|+.++..|+..|. +++++|+.....+..+..+.+... ....+.+...|. + .+ .+.|
T Consensus 7 ~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~---~----~l--~daD 76 (148)
T d1ldna1 7 ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY---D----DC--RDAD 76 (148)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG---G----GT--TTCS
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH---H----Hh--ccce
Confidence 78999996 9999999999999875 899998654333333333333221 123444444443 2 23 6789
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
+||.+||.... ......+.+..|..-.+.+.+.+.+.+.+ .++.+|.
T Consensus 77 vvvitag~~~~--~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN 124 (148)
T d1ldna1 77 LVVICAGANQK--PGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN 124 (148)
T ss_dssp EEEECCSCCCC--TTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred eEEEecccccc--cCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence 99999996532 23445667888999999999999988644 4555543
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.91 E-value=3.1e-05 Score=61.29 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=75.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCCCCCchhhhhhhhhcC-CCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
|+|.|+|| |.+|+.++..|+..| .+++++|++....+.....+.+... ......+... .|.++ + .+.|
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~~~----~--~dad 71 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDYAD----T--ANSD 71 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCGGG----G--TTCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCHHH----h--cCCe
Confidence 45788896 999999999999997 4899998765433322222221110 1123333322 22222 3 6889
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
++|-+||.... ...+..+.+..|..-.+.+.+.+.+.+.+-++.+-|
T Consensus 72 vvvitag~~~~--~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1guza1 72 IVIITAGLPRK--PGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (142)
T ss_dssp EEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred EEEEEEecCCC--CCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEec
Confidence 99999997432 234567788899999999999999887555554443
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.86 E-value=3.4e-05 Score=63.86 Aligned_cols=85 Identities=13% Similarity=0.121 Sum_probs=64.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
+.+ |+|+|.|+ |+.|++++..|.+.|. ++++++|+..+.+++....+.+... ........|+.+.+.+.+.+ ..
T Consensus 16 l~~-k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~ 90 (182)
T d1vi2a1 16 IKG-KTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNEN-TDCVVTVTDLADQQAFAEAL--AS 90 (182)
T ss_dssp CTT-CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHH--HT
T ss_pred cCC-CEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhh-cCcceEeeecccccchhhhh--cc
Confidence 446 89999995 9999999999999988 6888888766666555444333222 33456678999999988887 67
Q ss_pred CcEEEEcCccc
Q 015080 146 FDAVMHFAAVA 156 (413)
Q Consensus 146 ~dvvi~~Ag~~ 156 (413)
+|+|||+..+.
T Consensus 91 ~diiIN~Tp~G 101 (182)
T d1vi2a1 91 ADILTNGTKVG 101 (182)
T ss_dssp CSEEEECSSTT
T ss_pred cceeccccCCc
Confidence 89999997653
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.85 E-value=3.8e-06 Score=70.37 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=37.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhh
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQEL 117 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~ 117 (413)
|+|.|+||+|.||++||+.|++.|++|++.+|++.+.+++.+.+...
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~ 47 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRI 47 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc
Confidence 45778888999999999999999999999998665555555555443
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.83 E-value=7.8e-05 Score=58.82 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=75.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
.+|.|+|+ |.+|+++|..|+.+|. +++++|+.....+.....+++.........+...+ +.++ + .+.|+
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~--~~~~----~--~daDv 72 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSD--DPEI----C--RDADM 72 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEES--CGGG----G--TTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCC--CHHH----h--hCCcE
Confidence 46888896 9999999999999976 89999864432222222233321111223333222 2221 2 57899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEE-EEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL-IYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~i-V~~SS 196 (413)
||-.||.... ...+..+.+..|..-.+.+.+.+.+.+...+ +.+|.
T Consensus 73 VVitaG~~~~--~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtN 119 (143)
T d1llda1 73 VVITAGPRQK--PGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITN 119 (143)
T ss_dssp EEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred EEEecccccC--CCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 9999997532 3456678899999999999999999875444 44443
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.76 E-value=0.00016 Score=59.05 Aligned_cols=115 Identities=13% Similarity=0.112 Sum_probs=72.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC---C----EEEEEecCCCCCchhhhhhh-hhcC-CCCce-EEEEccCCCHHHHHHH
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS---Y----RVTIVDNLSRGNIGAVKVLQ-ELFP-EPGRL-QFIYADLGDAKAVNKF 140 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G---~----~V~~~~r~~~~~~~~~~~~~-~~~~-~~~~~-~~~~~Dl~d~~~~~~~ 140 (413)
-+|.||||+|.||++++..|++.+ . .+.+++. .......+-+. ++.. ..... ..+.++ + ..+.
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di--~~~~~~l~g~~mdl~d~a~~~~~~~~~~~--~---~~~~ 97 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGS--ERSFQALEGVAMELEDSLYPLLREVSIGI--D---PYEV 97 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECC--GGGHHHHHHHHHHHHTTTCTTEEEEEEES--C---HHHH
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecC--ccccchhcchhhhhcccccccccCccccc--c---chhh
Confidence 679999999999999999998752 2 4455543 22222222111 1111 11122 222222 2 2334
Q ss_pred hhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-C-CCEEEEecc
Q 015080 141 FSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-G-VDTLIYSST 196 (413)
Q Consensus 141 ~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~-~~~iV~~SS 196 (413)
+ .+.|+||-.||... ....+..+.+..|..-.+.+.+++.+. . -.+++.+|.
T Consensus 98 ~--~~aDvVvi~ag~~r--kpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N 151 (175)
T d7mdha1 98 F--EDVDWALLIGAKPR--GPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 151 (175)
T ss_dssp T--TTCSEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred c--cCCceEEEeeccCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 4 68899999999743 345677889999999999999999986 3 235555654
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.74 E-value=2.2e-05 Score=64.99 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=69.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
.+|||+||+|++|...++.....|++|++++++. +..+.+++. +....+..-|-...+.+.+.....++|+|+
T Consensus 31 ~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~----~~~~~~~~~---Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~ 103 (182)
T d1v3va2 31 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD----EKIAYLKQI---GFDAAFNYKTVNSLEEALKKASPDGYDCYF 103 (182)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHT---TCSEEEETTSCSCHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCH----HHHHHHHhh---hhhhhcccccccHHHHHHHHhhcCCCceeE
Confidence 7999999999999999999999999999987532 223333333 223333334555556666666657899999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecCC
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGE 202 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~~ 202 (413)
++.|-. .....++.++. .++++.+.....|+.
T Consensus 104 D~vG~~------------------~~~~~~~~l~~--~G~~v~~G~~~~~~~ 135 (182)
T d1v3va2 104 DNVGGE------------------FLNTVLSQMKD--FGKIAICGAISVYNR 135 (182)
T ss_dssp ESSCHH------------------HHHHHGGGEEE--EEEEEECCCGGGTTC
T ss_pred EecCch------------------hhhhhhhhccC--CCeEEeecceeeccc
Confidence 998721 01223333433 358888877666543
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.74 E-value=0.00015 Score=58.17 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=76.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcC-CCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
++|.|.|+ |.+|+.++..|+.+|. +++++|++.......+..+.+... .+........|..+ + .+.|
T Consensus 21 ~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~-------~--~~ad 90 (160)
T d1i0za1 21 NKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSV-------T--ANSK 90 (160)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGG-------G--TTCS
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhh-------c--cccc
Confidence 68999996 9999999999999987 899998654333222223332111 11222222333322 2 6889
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
+||..||.... ..++..+.++.|..-.+.+.+.+.+.+.+ -+|.+|.
T Consensus 91 iVVitAg~~~~--~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN 138 (160)
T d1i0za1 91 IVVVTAGVRQQ--EGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN 138 (160)
T ss_dssp EEEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEEEecCCccc--cCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 99999997532 23456678889999999999999998754 4555554
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.72 E-value=7.4e-05 Score=58.92 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=74.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhc-CCCCceEEEE-ccCCCHHHHHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELF-PEPGRLQFIY-ADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~-~Dl~d~~~~~~~~~~~~~ 146 (413)
|+|.|.|+ |.+|.+++..|+.+|. +++++|++....+.....+.+.. ..+....+.. .|. + .+ .+.
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~---~----~~--~~a 70 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY---S----LL--KGS 70 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG---G----GG--TTC
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH---H----Hh--ccc
Confidence 46777796 9999999999998875 79999865433222222232211 1112233332 233 2 23 678
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
|+||-.||.... ...+..+.+..|..-.+.+.+.+.+.+...++.+-|
T Consensus 71 diVvitag~~~~--~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 71 EIIVVTAGLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp SEEEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred cEEEEeccccCC--CCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 999999996432 334677888899999999999999987555555554
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.71 E-value=6.7e-05 Score=59.47 Aligned_cols=116 Identities=14% Similarity=0.118 Sum_probs=73.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcC-CCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
|+|.|+|+ |.+|+.++..|+.+|. +++++|++....+.....+.+... ..........|. ++ + .+.|
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~---~~----l--~~ad 71 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW---AA----L--ADAD 71 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG---GG----G--TTCS
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH---HH----h--cccc
Confidence 68889995 9999999999998874 899998654333222222332211 122334444443 22 2 6889
Q ss_pred EEEEcCcccCccC--CcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 148 AVMHFAAVAYVGE--STLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
+||-+||...... ...+..+.++.|..-.+.+.+.+.+.+...++.+-|
T Consensus 72 iVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 72 VVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp EEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 9999999653211 111223457789999999999999987555555444
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.68 E-value=0.00026 Score=56.52 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=72.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC----E---EEEEecCCCCCchhhhh-hhhhc-CCCCceEEEEccCCCHHHHHHHh
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY----R---VTIVDNLSRGNIGAVKV-LQELF-PEPGRLQFIYADLGDAKAVNKFF 141 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~----~---V~~~~r~~~~~~~~~~~-~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~ 141 (413)
++|.|+||+|++|++++..|++.+. . ..+++ ........+. ...+. ........+...-.+. +.+
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 78 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLE--IPQAMKALEGVVMELEDCAFPLLAGLEATDDPK----VAF 78 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEEC--CGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHH----HHT
T ss_pred CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhc--cccchhhHcCchhhhhccccccccccccCCchh----hhc
Confidence 7899999999999999999998753 1 22221 2222222211 11111 1112333333332233 334
Q ss_pred hcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEecc
Q 015080 142 SENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-GV-DTLIYSST 196 (413)
Q Consensus 142 ~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~iV~~SS 196 (413)
.+.|+||-+||... ....+..+.+..|+.-.+.+.+.+.+. .. ..++.+|.
T Consensus 79 --~~advViitaG~~~--~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN 131 (154)
T d1y7ta1 79 --KDADYALLVGAAPR--KAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN 131 (154)
T ss_dssp --TTCSEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred --ccccEEEeecCcCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 68899999999753 234567788999999999999999985 32 34555554
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=0.00014 Score=61.84 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=55.3
Q ss_pred CCCCceEEEEEcC----------------CChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEc
Q 015080 66 HEEGVTHVLVTGG----------------AGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYA 129 (413)
Q Consensus 66 ~~~~~k~vlITGa----------------sG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (413)
++.| |+||||+| ||..|.+||+++..+|++|+++........ +..+..+..
T Consensus 3 dl~g-~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~------------p~~~~~~~~ 69 (223)
T d1u7za_ 3 DLKH-LNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPT------------PPFVKRVDV 69 (223)
T ss_dssp TTTT-CEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCC------------CTTEEEEEC
T ss_pred ccCC-CEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCc------------cccccccee
Confidence 4567 88999975 699999999999999999999875332211 245555443
Q ss_pred cCCCHHHHHHHhhc--CCCcEEEEcCcccCc
Q 015080 130 DLGDAKAVNKFFSE--NAFDAVMHFAAVAYV 158 (413)
Q Consensus 130 Dl~d~~~~~~~~~~--~~~dvvi~~Ag~~~~ 158 (413)
...+++.+.+.. ...|++|++|++..+
T Consensus 70 --~t~~~m~~~~~~~~~~~D~~i~aAAvsDf 98 (223)
T d1u7za_ 70 --MTALEMEAAVNASVQQQNIFIGCAAVADY 98 (223)
T ss_dssp --CSHHHHHHHHHHHGGGCSEEEECCBCCSE
T ss_pred --hhhHHHHHHHHhhhccceeEeeeechhhh
Confidence 455555444422 578999999998755
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=4.7e-05 Score=62.45 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=50.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHH---HHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAK---AVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~~d 147 (413)
.+|||+||+|.+|...+..+...|++|++++++. +..+.++++ +.. ++ .|.++.+ .+.+.....++|
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~----~~~~~~~~~---Ga~-~v--i~~~~~~~~~~i~~~t~~~g~d 99 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTE----EGQKIVLQN---GAH-EV--FNHREVNYIDKIKKYVGEKGID 99 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHT---TCS-EE--EETTSTTHHHHHHHHHCTTCEE
T ss_pred CEEEEEeccccccccccccccccCcccccccccc----ccccccccc---Ccc-cc--cccccccHHHHhhhhhccCCce
Confidence 7999999999999999999999999999987532 223344443 111 22 2555543 333444346799
Q ss_pred EEEEcCc
Q 015080 148 AVMHFAA 154 (413)
Q Consensus 148 vvi~~Ag 154 (413)
+++++.|
T Consensus 100 ~v~d~~g 106 (174)
T d1yb5a2 100 IIIEMLA 106 (174)
T ss_dssp EEEESCH
T ss_pred EEeeccc
Confidence 9999876
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=0.00028 Score=55.68 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=55.6
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCC----CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDS----YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
||+|.|.||||++|+.+++.|+++. .+++.+..+...... ... ..-.....++.+.+.+ .+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~-~~~--------~~~~~~~~~~~~~~~~------~~ 65 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA-PSF--------GGTTGTLQDAFDLEAL------KA 65 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC-CGG--------GTCCCBCEETTCHHHH------HT
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc-ccc--------cCCceeeecccchhhh------hc
Confidence 7899999999999999999888763 256666533222111 111 0111122334444332 47
Q ss_pred CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 146 FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
+|++|.+++- ..++.+.+.+.+.+.+ .+|=.||
T Consensus 66 ~DivF~a~~~------------------~~s~~~~~~~~~~g~~~~VID~Ss 99 (146)
T d1t4ba1 66 LDIIVTCQGG------------------DYTNEIYPKLRESGWQGYWIDAAS 99 (146)
T ss_dssp CSEEEECSCH------------------HHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CcEEEEecCc------------------hHHHHhhHHHHhcCCCeecccCCc
Confidence 8999988752 2255677778787763 3344444
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.56 E-value=8.9e-05 Score=59.52 Aligned_cols=114 Identities=16% Similarity=0.112 Sum_probs=74.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCCCCCchhhhhhhhhcCC-CCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPE-PGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
.+|.|+|+ |.+|..+|..|+..|. +++++|++.......+..+.+.... +........|..+ + .+.|
T Consensus 20 ~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~-------~--~~ad 89 (159)
T d2ldxa1 20 CKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNV-------S--ANSK 89 (159)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGG-------G--TTEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhh-------h--cccc
Confidence 57888895 9999999999999976 8999986543322222333332211 2222333334321 2 5789
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCE-EEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT-LIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~-iV~~SS 196 (413)
+||..||....+ ..+..+.++.|..-.+.+.+.+.+.+.+- ++.+|.
T Consensus 90 ivvitag~~~~~--~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN 137 (159)
T d2ldxa1 90 LVIITAGARMVS--GQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN 137 (159)
T ss_dssp EEEECCSCCCCT--TTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred EEEEecccccCC--CCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 999999975432 23445568889999999999999886544 444443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.55 E-value=5.6e-05 Score=62.01 Aligned_cols=98 Identities=21% Similarity=0.176 Sum_probs=59.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC-HHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD-AKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~dvv 149 (413)
.+|||+||+|++|...++.....|++|+.++++..+.+ .++++ +... .+ |-.+ .++..+.....++|+|
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~----~~~~l---Ga~~-vi--~~~~~~~~~~~~~~~~gvD~v 102 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHD----YLRVL---GAKE-VL--AREDVMAERIRPLDKQRWAAA 102 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHH----HHHHT---TCSE-EE--ECC---------CCSCCEEEE
T ss_pred CEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHH----HHHhc---ccce-ee--ecchhHHHHHHHhhccCcCEE
Confidence 78999999999999999999999999999886544432 22332 1222 22 2221 1223334444789999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
|++.|-.. ....+..++. .+|+|.++...
T Consensus 103 id~vgg~~------------------~~~~l~~l~~--~Griv~~G~~~ 131 (176)
T d1xa0a2 103 VDPVGGRT------------------LATVLSRMRY--GGAVAVSGLTG 131 (176)
T ss_dssp EECSTTTT------------------HHHHHHTEEE--EEEEEECSCCS
T ss_pred EEcCCchh------------------HHHHHHHhCC--CceEEEeeccc
Confidence 99987321 1123333333 36899888754
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.52 E-value=0.00024 Score=56.77 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=69.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-------EEEEEecCCCCCchhhhhhh-hh-cCCCCceEEEEccCCCHHHHHHHh
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRGNIGAVKVLQ-EL-FPEPGRLQFIYADLGDAKAVNKFF 141 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~~~~~Dl~d~~~~~~~~ 141 (413)
++|.|+||+|.+|++++..|++.+- ++++++ ........+.+. ++ .........+..--.+ .+.+
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~ 77 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLD--ITPMMGVLDGVLMELQDCALPLLKDVIATDKE----EIAF 77 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEEC--CGGGHHHHHHHHHHHHHTCCTTEEEEEEESCH----HHHT
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEec--CccchhhhhhhhhhhcccccccccccccCccc----cccc
Confidence 7899999999999999999986532 344544 233323222221 11 1111222222221112 2334
Q ss_pred hcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEecc
Q 015080 142 SENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH-GVD-TLIYSST 196 (413)
Q Consensus 142 ~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~-~iV~~SS 196 (413)
.+.|+||-.||.... ...+..+.++.|..-.+.+.+.+.+. +.. .++.+|.
T Consensus 78 --~~~dvVVitag~~~~--~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsN 130 (154)
T d5mdha1 78 --KDLDVAILVGSMPRR--DGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (154)
T ss_dssp --TTCSEEEECCSCCCC--TTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred --CCceEEEEecccCCC--CCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecC
Confidence 688999999997543 23345567889999999999998775 433 4455553
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.51 E-value=0.00014 Score=57.35 Aligned_cols=114 Identities=14% Similarity=0.132 Sum_probs=69.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhc-CCCCceEEE-EccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELF-PEPGRLQFI-YADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~d 147 (413)
++|.|.|+ |.+|+++|..|+.++. +++++|......+.....+.+.. ..+....+. ..|..+ + .+.|
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~-------~--~~ad 71 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD-------T--ANSD 71 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG-------G--TTCS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH-------h--cCCC
Confidence 67888896 9999999999988875 88998864433222222221110 001222232 223222 2 5789
Q ss_pred EEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 148 AVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 148 vvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
+||-+||.... ...+..+.+..|..-.+.+++.+.+.+.+.++.+.|
T Consensus 72 vvvitag~~~~--~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 72 VIVVTSGAPRK--PGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp EEEECCSCC-----------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred EEEEeeeccCC--cCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 99999996532 223445667889999999999999987555555544
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.49 E-value=0.0003 Score=55.82 Aligned_cols=117 Identities=11% Similarity=0.074 Sum_probs=74.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcC-CCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
.||.|.|+ |.+|++++..|...+. ++.++|+.....+..+..+.+... ......+...+ +.+ .+ .+.|+
T Consensus 4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~~----~~--~~adv 74 (150)
T d1t2da1 4 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TYD----DL--AGADV 74 (150)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CGG----GG--TTCSE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--ccc----cc--CCCcE
Confidence 57888895 9999999998888765 788888754433333333332211 11223333322 222 12 67899
Q ss_pred EEEcCcccCccC---CcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 149 VMHFAAVAYVGE---STLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~---~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
||-+||....+. ...+....+..|..-.+.+.+.+++.+...++.+-|
T Consensus 75 vvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 75 VIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp EEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 999999754322 122456678899999999999999987555544444
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.49 E-value=0.00016 Score=56.33 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=52.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+++|.|+ |-+|+++++.|.+.|++|++++.+. +..+.+.. .....+.+|.++++.+.++-- .++|.||
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~----~~~~~~~~-----~~~~~~~gd~~~~~~l~~a~i-~~a~~vi 69 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINE----EKVNAYAS-----YATHAVIANATEENELLSLGI-RNFEYVI 69 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCH----HHHHHTTT-----TCSEEEECCTTCTTHHHHHTG-GGCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcH----HHHHHHHH-----hCCcceeeecccchhhhccCC-ccccEEE
Confidence 46788885 9999999999999999999997533 22222221 345678899999998887721 4678877
Q ss_pred EcC
Q 015080 151 HFA 153 (413)
Q Consensus 151 ~~A 153 (413)
-+.
T Consensus 70 ~~~ 72 (134)
T d2hmva1 70 VAI 72 (134)
T ss_dssp ECC
T ss_pred EEc
Confidence 443
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.45 E-value=0.00051 Score=54.59 Aligned_cols=80 Identities=14% Similarity=0.214 Sum_probs=50.3
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHh-hc-CCC
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFF-SE-NAF 146 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~-~~~ 146 (413)
.||+|.|.||.|.+|+.+++.|.+.|++|.++++......+ ..+. .....+...++.....+...+ .. ..=
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~--~~~~-----~~~~v~~~~~~~~~~~v~~~~~~~~~~~ 80 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE--SILA-----NADVVIVSVPINLTLETIERLKPYLTEN 80 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH--HHHT-----TCSEEEECSCGGGHHHHHHHHGGGCCTT
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc--hhhh-----hccccccccchhhheeeeecccccccCC
Confidence 45899999999999999999999999999999875433221 1111 134444444444433333222 21 222
Q ss_pred cEEEEcCcc
Q 015080 147 DAVMHFAAV 155 (413)
Q Consensus 147 dvvi~~Ag~ 155 (413)
.+++..+++
T Consensus 81 ~iiiD~~Sv 89 (152)
T d2pv7a2 81 MLLADLTSV 89 (152)
T ss_dssp SEEEECCSC
T ss_pred ceEEEeccc
Confidence 477777654
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=2.9e-05 Score=63.52 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=49.8
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
.+ |+|||.| +|+.+++++..|.+.|.+|+++.|+..+.+++.+.+... ..+..+ +..+. +...+|
T Consensus 17 ~~-k~vlIlG-aGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~----~~~~~~--~~~~~-------~~~~~d 81 (170)
T d1nyta1 17 PG-LRILLIG-AGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT----GSIQAL--SMDEL-------EGHEFD 81 (170)
T ss_dssp TT-CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG----SSEEEC--CSGGG-------TTCCCS
T ss_pred CC-CEEEEEC-CcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhc----cccccc--ccccc-------cccccc
Confidence 35 8999999 599999999999999999999876554444444333322 233332 32221 125789
Q ss_pred EEEEcCccc
Q 015080 148 AVMHFAAVA 156 (413)
Q Consensus 148 vvi~~Ag~~ 156 (413)
+|||+..+.
T Consensus 82 liIN~Tp~G 90 (170)
T d1nyta1 82 LIINATSSG 90 (170)
T ss_dssp EEEECCSCG
T ss_pred eeecccccC
Confidence 999998654
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.40 E-value=0.0002 Score=58.93 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=50.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH---HHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA---KAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~~d 147 (413)
.+|||+||+|.+|..++..+...|++|++++++. +..+.+++. +.. ++ .|..++ +.+.+.....++|
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~----~~~~~l~~~---Ga~-~v--i~~~~~~~~~~v~~~t~~~g~d 96 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD----AKREMLSRL---GVE-YV--GDSRSVDFADEILELTDGYGVD 96 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH----HHHHHHHTT---CCS-EE--EETTCSTHHHHHHHHTTTCCEE
T ss_pred CEEEEECCCCCcccccchhhccccccceeeeccc----ccccccccc---ccc-cc--ccCCccCHHHHHHHHhCCCCEE
Confidence 7999999999999999999988899999987532 223444443 222 22 233443 3444444346799
Q ss_pred EEEEcCc
Q 015080 148 AVMHFAA 154 (413)
Q Consensus 148 vvi~~Ag 154 (413)
++|++.|
T Consensus 97 ~v~d~~g 103 (183)
T d1pqwa_ 97 VVLNSLA 103 (183)
T ss_dssp EEEECCC
T ss_pred EEEeccc
Confidence 9999987
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=0.00027 Score=57.88 Aligned_cols=75 Identities=9% Similarity=0.031 Sum_probs=51.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHH---HHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAK---AVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~~d 147 (413)
++|||+||+|.+|..+++.+...|++|++++++..+ .+.++++ +.. ++ .|.++++ .+.++....++|
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k----~~~~~~l---Ga~-~v--i~~~~~d~~~~v~~~t~g~g~d 99 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQK----AQSALKA---GAW-QV--INYREEDLVERLKEITGGKKVR 99 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHH----HHHHHHH---TCS-EE--EETTTSCHHHHHHHHTTTCCEE
T ss_pred CEEEEEccccccchHHHHHHHHhCCeEeecccchHH----HHHHHhc---CCe-EE--EECCCCCHHHHHHHHhCCCCeE
Confidence 799999999999999999999999999998764332 2334444 222 22 2444433 444444346799
Q ss_pred EEEEcCcc
Q 015080 148 AVMHFAAV 155 (413)
Q Consensus 148 vvi~~Ag~ 155 (413)
+|+++.|-
T Consensus 100 ~v~d~~g~ 107 (179)
T d1qora2 100 VVYDSVGR 107 (179)
T ss_dssp EEEECSCG
T ss_pred EEEeCccH
Confidence 99999873
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.37 E-value=0.00019 Score=58.52 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=48.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
++|||+||+|.+|...+..+...|++|++++++..+. +.++++ +... . .|..+. ..+.-...++|+||
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~----~~~~~l---Ga~~-~--i~~~~~--~~~~~~~~g~D~v~ 96 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL----ALPLAL---GAEE-A--ATYAEV--PERAKAWGGLDLVL 96 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGS----HHHHHT---TCSE-E--EEGGGH--HHHHHHTTSEEEEE
T ss_pred CEEEEEeccccchhhhhhhhccccccccccccccccc----cccccc---ccce-e--eehhhh--hhhhhccccccccc
Confidence 7999999999999999999999999999988643322 233333 1111 1 133332 23333347899999
Q ss_pred EcCc
Q 015080 151 HFAA 154 (413)
Q Consensus 151 ~~Ag 154 (413)
++.|
T Consensus 97 d~~G 100 (171)
T d1iz0a2 97 EVRG 100 (171)
T ss_dssp ECSC
T ss_pred cccc
Confidence 9876
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.37 E-value=7.9e-05 Score=60.04 Aligned_cols=70 Identities=21% Similarity=0.238 Sum_probs=48.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
++|||.|+ |.+|..+++.|...|+ +|+++.|+. +.+.+..++. +... .+.+++.+.+ ..+|+|
T Consensus 25 ~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~---~ka~~l~~~~-----~~~~-----~~~~~~~~~l--~~~Div 88 (159)
T d1gpja2 25 KTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTY---ERAVELARDL-----GGEA-----VRFDELVDHL--ARSDVV 88 (159)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSH---HHHHHHHHHH-----TCEE-----CCGGGHHHHH--HTCSEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcH---HHHHHHHHhh-----hccc-----ccchhHHHHh--ccCCEE
Confidence 89999996 9999999999999998 688876543 3333333332 1222 2344566666 578999
Q ss_pred EEcCccc
Q 015080 150 MHFAAVA 156 (413)
Q Consensus 150 i~~Ag~~ 156 (413)
|.+.+..
T Consensus 89 i~atss~ 95 (159)
T d1gpja2 89 VSATAAP 95 (159)
T ss_dssp EECCSSS
T ss_pred EEecCCC
Confidence 9998743
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.00072 Score=50.50 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=54.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
.+|.|.| +|.+|+-++....+.|++|++++.+..... .. -.-.++.+|..|.+.+.++.....+|+|-
T Consensus 12 ~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~~PA--~~---------va~~~i~~~~~d~~~l~~~~~~~~~DviT 79 (111)
T d1kjqa2 12 TRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYADAPA--MH---------VAHRSHVINMLDGDALRRVVELEKPHYIV 79 (111)
T ss_dssp CEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTTCGG--GG---------GSSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCCCch--hh---------cCCeEEECCCCCHHHHHHHHHhhCCceEE
Confidence 6899999 699999999999999999999986444322 10 12367889999999999998766789986
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.29 E-value=0.00037 Score=56.51 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=50.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEE-EccCCCHHHHHHHhhc---CCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFI-YADLGDAKAVNKFFSE---NAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~---~~~ 146 (413)
.+|+|+| +|.||...+..+...|++|++++++.. ..+.++++ +....+. .-.-.+...+.+.+.+ .++
T Consensus 28 ~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~----r~~~a~~~---ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 99 (170)
T d1e3ja2 28 TTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPR----RLEVAKNC---GADVTLVVDPAKEEESSIIERIRSAIGDLP 99 (170)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHT---TCSEEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred CEEEEEc-ccccchhhHhhHhhhcccccccchHHH----HHHHHHHc---CCcEEEeccccccccchhhhhhhcccccCC
Confidence 6899998 699999999999999999999875432 23333333 1222221 2222344455444433 569
Q ss_pred cEEEEcCcc
Q 015080 147 DAVMHFAAV 155 (413)
Q Consensus 147 dvvi~~Ag~ 155 (413)
|++|.++|.
T Consensus 100 D~vid~~g~ 108 (170)
T d1e3ja2 100 NVTIDCSGN 108 (170)
T ss_dssp SEEEECSCC
T ss_pred ceeeecCCC
Confidence 999999984
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.29 E-value=0.0013 Score=53.81 Aligned_cols=102 Identities=15% Similarity=0.154 Sum_probs=57.4
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHC-CCEEEEEe-cCC-CCC-chhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVD-NLS-RGN-IGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~-G~~V~~~~-r~~-~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
|++|.|.||||+.|++|++.|.++ ..+|..+. +.. +.. +........+... ........+ +.. ... .+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~-~~~~~~~~~--~~~---~~~--~~ 72 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGI-VDLPLQPMS--DVR---DFS--AD 72 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTT-CCCBEEEES--CGG---GTC--TT
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccc-cccccccch--hhh---hhh--cc
Confidence 799999999999999999999998 55765443 221 111 2222222222221 112222111 111 111 57
Q ss_pred CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 146 FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
+|+++.+..- .....+.+.+.+.+. ++|-.|+..
T Consensus 73 ~dvvf~alp~------------------~~s~~~~~~~~~~~~-~vIDlSadf 106 (179)
T d2g17a1 73 VDVVFLATAH------------------EVSHDLAPQFLQAGC-VVFDLSGAF 106 (179)
T ss_dssp CCEEEECSCH------------------HHHHHHHHHHHHTTC-EEEECSSTT
T ss_pred cceeeccccc------------------hhHHHHhhhhhhcCc-eeecccccc
Confidence 8999987642 113345566666664 788888844
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.00038 Score=48.21 Aligned_cols=34 Identities=35% Similarity=0.467 Sum_probs=30.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
++|||+||+|++|...+..+...|++|+++.+++
T Consensus 33 ~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~ 66 (77)
T d1o8ca2 33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE 66 (77)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCH
Confidence 7899999999999999999899999999987644
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.09 E-value=0.00052 Score=55.78 Aligned_cols=74 Identities=20% Similarity=0.288 Sum_probs=51.6
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
.+ |+|+|.| +|+.+++++..|.+.+.+|+++.|+..+.+...+.+... ..+..+..|-.+ + ..+|
T Consensus 17 ~~-k~vlIlG-aGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~----~~~~~~~~~~~~-------~--~~~d 81 (171)
T d1p77a1 17 PN-QHVLILG-AGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY----GNIQAVSMDSIP-------L--QTYD 81 (171)
T ss_dssp TT-CEEEEEC-CSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG----SCEEEEEGGGCC-------C--SCCS
T ss_pred CC-CEEEEEC-CcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhc----cccchhhhcccc-------c--cccc
Confidence 35 8999999 599999999999998889999987654444444444322 345555544221 2 6789
Q ss_pred EEEEcCccc
Q 015080 148 AVMHFAAVA 156 (413)
Q Consensus 148 vvi~~Ag~~ 156 (413)
+|||+....
T Consensus 82 iiIN~tp~g 90 (171)
T d1p77a1 82 LVINATSAG 90 (171)
T ss_dssp EEEECCCC-
T ss_pred eeeeccccc
Confidence 999997654
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.09 E-value=0.0004 Score=54.72 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=26.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC---EEEEEe
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY---RVTIVD 101 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~---~V~~~~ 101 (413)
++|.|.||||++|++|++.|.+++| ++..+.
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~ 36 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLA 36 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEe
Confidence 7899999999999999999987654 666654
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.06 E-value=0.005 Score=45.88 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=63.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
++++ |+|||.| +|-+|..-++.|++.|++|++++. ....+....+. ..++.++..+..+.+ + .+
T Consensus 9 ~l~~-k~vlVvG-~G~va~~ka~~ll~~ga~v~v~~~--~~~~~~~~~~~-----~~~i~~~~~~~~~~d-----l--~~ 72 (113)
T d1pjqa1 9 QLRD-RDCLIVG-GGDVAERKARLLLEAGARLTVNAL--TFIPQFTVWAN-----EGMLTLVEGPFDETL-----L--DS 72 (113)
T ss_dssp CCBT-CEEEEEC-CSHHHHHHHHHHHHTTBEEEEEES--SCCHHHHHHHT-----TTSCEEEESSCCGGG-----G--TT
T ss_pred EeCC-CEEEEEC-CCHHHHHHHHHHHHCCCeEEEEec--cCChHHHHHHh-----cCCceeeccCCCHHH-----h--CC
Confidence 5667 9999999 599999999999999999999863 22222222221 146777776665432 3 56
Q ss_pred CcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 146 FDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 146 ~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
.+.|+.+.+ +.+ -...+...+++.+ .+|++..
T Consensus 73 ~~lv~~at~---------d~~--------~n~~i~~~a~~~~--ilVNv~D 104 (113)
T d1pjqa1 73 CWLAIAATD---------DDT--------VNQRVSDAAESRR--IFCNVVD 104 (113)
T ss_dssp CSEEEECCS---------CHH--------HHHHHHHHHHHTT--CEEEETT
T ss_pred CcEEeecCC---------CHH--------HHHHHHHHHHHcC--CEEEeCC
Confidence 788875543 111 1335667777775 4788765
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.03 E-value=0.00061 Score=56.19 Aligned_cols=103 Identities=15% Similarity=0.080 Sum_probs=55.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHH-HHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAK-AVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~~~~~~~~dvv 149 (413)
++|||+||+|++|+..++.....|+++++... .+.++..+..+++ +. -..+...-.+.. .+++.. ..++|+|
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~--~~~e~~~~l~~~~---ga-d~vi~~~~~~~~~~~~~~~-~~GvDvv 104 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGIC--GTQEKCLFLTSEL---GF-DAAVNYKTGNVAEQLREAC-PGGVDVY 104 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEE--SSHHHHHHHHHHS---CC-SEEEETTSSCHHHHHHHHC-TTCEEEE
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceeccc--chHHHHhhhhhcc---cc-eEEeeccchhHHHHHHHHh-ccCceEE
Confidence 68999999999999999998889987554321 2222333333333 11 222222222333 333333 3679999
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceec
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATY 200 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~ 200 (413)
+.+.|-. . ....++.++. .+++|.+.+++.|
T Consensus 105 ~D~vGg~-----------~-------~~~~~~~l~~--~G~iv~~G~~s~~ 135 (187)
T d1vj1a2 105 FDNVGGD-----------I-------SNTVISQMNE--NSHIILCGQISQY 135 (187)
T ss_dssp EESSCHH-----------H-------HHHHHTTEEE--EEEEEEC------
T ss_pred EecCCch-----------h-------HHHHhhhccc--cccEEEecccccc
Confidence 9998721 0 1123333332 4689988876655
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.00056 Score=55.00 Aligned_cols=37 Identities=19% Similarity=0.104 Sum_probs=32.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNI 108 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~ 108 (413)
|+|+|.|+ |.||..++..|++.|++|.+++|......
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~~ 37 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPYC 37 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHhh
Confidence 57999996 99999999999999999999998665443
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.00 E-value=0.0017 Score=52.10 Aligned_cols=103 Identities=17% Similarity=0.293 Sum_probs=63.2
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhh-------hhhhcCCCCceEEEEccCCCHHHHHHHhh
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKV-------LQELFPEPGRLQFIYADLGDAKAVNKFFS 142 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 142 (413)
|++|.|.| .|-+|+.+|+.|+++|++|.+.+|+....+.+... ..+. -....++..-+.+...++.++.
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~---~~~~diii~~v~~~~~~~~v~~ 76 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDA---VQGADVVISMLPASQHVEGLYL 76 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHH---HTSCSEEEECCSCHHHHHHHHH
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhh---ccccCeeeecccchhhHHHHHh
Confidence 68899998 79999999999999999999998754332221111 1111 1234455555666666665543
Q ss_pred c--------CCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Q 015080 143 E--------NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIY 193 (413)
Q Consensus 143 ~--------~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~ 193 (413)
. .+=+++|++..+. ++ .+..+.+.+++.+. +++-
T Consensus 77 ~~~~~~~~l~~g~iiid~st~~--------p~--------~~~~~~~~~~~~gi-~~~d 118 (162)
T d3cuma2 77 DDDGLLAHIAPGTLVLECSTIA--------PT--------SARKIHAAARERGL-AMLD 118 (162)
T ss_dssp STTCHHHHSCTTCEEEECSCCC--------HH--------HHHHHHHHHHHTTC-EEEE
T ss_pred ccccccccCCCCCEEEECCCCC--------HH--------HHHHHHHHHHHCCC-cEEe
Confidence 2 1235777665432 22 24556677777765 5554
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.0023 Score=46.02 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=48.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
++.+ |+|+|.|. |..|.++|+.|.++|++|++.|...... ..+.++ ....+..... +... + .+
T Consensus 2 ~~~~-K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~--~~~~~~------~~~~~~~~~~-~~~~----~--~~ 64 (93)
T d2jfga1 2 DYQG-KNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPP--GLDKLP------EAVERHTGSL-NDEW----L--MA 64 (93)
T ss_dssp CCTT-CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCT--TGGGSC------TTSCEEESBC-CHHH----H--HH
T ss_pred CcCC-CEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCch--hHHHHh------hccceeeccc-chhh----h--cc
Confidence 3557 89999996 8899999999999999999998643322 222221 2333444443 2222 2 35
Q ss_pred CcEEEEcCccc
Q 015080 146 FDAVMHFAAVA 156 (413)
Q Consensus 146 ~dvvi~~Ag~~ 156 (413)
+|.||-.-|+.
T Consensus 65 ~d~vi~SPGi~ 75 (93)
T d2jfga1 65 ADLIVASPGIA 75 (93)
T ss_dssp CSEEEECTTSC
T ss_pred CCEEEECCCCC
Confidence 69999877763
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.92 E-value=0.0023 Score=52.23 Aligned_cols=76 Identities=11% Similarity=0.126 Sum_probs=48.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHH----HHHhhcCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAV----NKFFSENA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~----~~~~~~~~ 145 (413)
.+|||+|+ |.||...+..+...|+ +|++++++.. ..+.++++ +.. ..+...=.+..+. .+.....+
T Consensus 30 ~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~----~~~~a~~l---Ga~-~vi~~~~~~~~~~~~~i~~~~~~~g 100 (182)
T d1vj0a2 30 KTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPN----RLKLAEEI---GAD-LTLNRRETSVEERRKAIMDITHGRG 100 (182)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHH----HHHHHHHT---TCS-EEEETTTSCHHHHHHHHHHHTTTSC
T ss_pred CEEEEECC-Cccchhheecccccccccccccccccc----cccccccc---cce-EEEeccccchHHHHHHHHHhhCCCC
Confidence 78999996 9999999999999998 7999876432 22333443 111 2222222333332 22232357
Q ss_pred CcEEEEcCcc
Q 015080 146 FDAVMHFAAV 155 (413)
Q Consensus 146 ~dvvi~~Ag~ 155 (413)
+|+||.+.|.
T Consensus 101 ~Dvvid~vG~ 110 (182)
T d1vj0a2 101 ADFILEATGD 110 (182)
T ss_dssp EEEEEECSSC
T ss_pred ceEEeecCCc
Confidence 9999999874
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.90 E-value=0.00028 Score=57.18 Aligned_cols=36 Identities=33% Similarity=0.375 Sum_probs=31.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG 106 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~ 106 (413)
.+|||+||+|++|...++.....|++|+.++++..+
T Consensus 25 ~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k 60 (167)
T d1tt7a2 25 GSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREA 60 (167)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSST
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHH
Confidence 579999999999999998888889999998875444
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.90 E-value=0.0072 Score=47.19 Aligned_cols=95 Identities=18% Similarity=0.181 Sum_probs=55.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC----CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS----YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
|+|.|.||||++|++|++.|+++. .++..++.. +...+... . ... .....+..+.+. + .++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~-~~~gk~~~----~---~~~-~~~~~~~~~~~~----~--~~~ 65 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTS-QIGVPAPN----F---GKD-AGMLHDAFDIES----L--KQL 65 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESS-CCSSBCCC----S---SSC-CCBCEETTCHHH----H--TTC
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccc-cccccccc----c---CCc-ceeeecccchhh----h--ccc
Confidence 469999999999999999888753 356555422 22211110 0 011 111123334332 3 578
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccce
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TLIYSSTCA 198 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS~~ 198 (413)
|++|.+..- .-++.+.+.+.+.+.+ .+|=.||..
T Consensus 66 DvvF~alp~------------------~~s~~~~~~l~~~g~~~~VIDlSsdf 100 (147)
T d1mb4a1 66 DAVITCQGG------------------SYTEKVYPALRQAGWKGYWIDAASTL 100 (147)
T ss_dssp SEEEECSCH------------------HHHHHHHHHHHHTTCCSEEEESSSTT
T ss_pred cEEEEecCc------------------hHHHHHhHHHHHcCCceEEEeCCccc
Confidence 999988741 1155677888888764 466677743
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.0018 Score=52.34 Aligned_cols=76 Identities=14% Similarity=0.140 Sum_probs=51.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhc---CCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSE---NAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---~~~ 146 (413)
.+|+|.|+ |.+|...+..+...|+ +|++++++.. ..+..+++ +. -.++..+-.+..+..+.++. .++
T Consensus 28 d~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~----rl~~a~~~---Ga-~~~~~~~~~~~~~~~~~~~~~~g~g~ 98 (171)
T d1pl8a2 28 HKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSAT----RLSKAKEI---GA-DLVLQISKESPQEIARKVEGQLGCKP 98 (171)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH----HHHHHHHT---TC-SEEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred CEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHH----HHHHHHHh---CC-cccccccccccccccccccccCCCCc
Confidence 68999986 9999999999999999 7888875432 23333333 11 23333444555555554433 579
Q ss_pred cEEEEcCcc
Q 015080 147 DAVMHFAAV 155 (413)
Q Consensus 147 dvvi~~Ag~ 155 (413)
|++|.+.|.
T Consensus 99 Dvvid~~G~ 107 (171)
T d1pl8a2 99 EVTIECTGA 107 (171)
T ss_dssp SEEEECSCC
T ss_pred eEEEeccCC
Confidence 999999883
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.79 E-value=0.0008 Score=54.97 Aligned_cols=33 Identities=24% Similarity=0.029 Sum_probs=30.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
|+|.|.|| |-+|..++..|+++|++|.+++|..
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCH
Confidence 78999995 9999999999999999999998743
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.78 E-value=0.00087 Score=54.19 Aligned_cols=77 Identities=22% Similarity=0.243 Sum_probs=49.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH-HHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA-KAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~~~dv 148 (413)
.+|+|+|++|.+|..++..+...|. +|++++++. +..+.++++ +.. ..+..+-.|. +.+.+.....++|+
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~----~~~~~~~~~---Ga~-~~i~~~~~~~~~~~~~~~~~~~~d~ 100 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE----EAVEAAKRA---GAD-YVINASMQDPLAEIRRITESKGVDA 100 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH----HHHHHHHHH---TCS-EEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred CEEEEEeccccceeeeeecccccccccccccccch----hhHHHHHHc---CCc-eeeccCCcCHHHHHHHHhhcccchh
Confidence 7899999999999999999988885 788876432 233344443 122 2333332222 23333333356999
Q ss_pred EEEcCcc
Q 015080 149 VMHFAAV 155 (413)
Q Consensus 149 vi~~Ag~ 155 (413)
+|.++|.
T Consensus 101 vid~~g~ 107 (170)
T d1jvba2 101 VIDLNNS 107 (170)
T ss_dssp EEESCCC
T ss_pred hhccccc
Confidence 9999874
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.73 E-value=0.0049 Score=49.82 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=27.4
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEe
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVD 101 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~ 101 (413)
|++|.|.||||++|++|++.|.++.. ++..+.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~ 33 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLS 33 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEee
Confidence 78999999999999999999998744 666554
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.0026 Score=50.31 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=56.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
-+|+|.|. |-+|..+++.|.+.|.+|++++.++. ...+.+.+.. ..++.++.+|.+|++.++++-- ..+|.||
T Consensus 4 nHiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~---~~~~~~~~~~--~~~~~vi~Gd~~d~~~L~~a~i-~~a~~vi 76 (153)
T d1id1a_ 4 DHFIVCGH-SILAINTILQLNQRGQNVTVISNLPE---DDIKQLEQRL--GDNADVIPGDSNDSSVLKKAGI-DRCRAIL 76 (153)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCH---HHHHHHHHHH--CTTCEEEESCTTSHHHHHHHTT-TTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCEEEEeccch---hHHHHHHHhh--cCCcEEEEccCcchHHHHHhcc-ccCCEEE
Confidence 36999995 89999999999999999999874332 2222222222 2478999999999998876643 4678888
Q ss_pred EcC
Q 015080 151 HFA 153 (413)
Q Consensus 151 ~~A 153 (413)
-+.
T Consensus 77 ~~~ 79 (153)
T d1id1a_ 77 ALS 79 (153)
T ss_dssp ECS
T ss_pred Ecc
Confidence 554
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.67 E-value=0.00077 Score=54.89 Aligned_cols=76 Identities=16% Similarity=0.080 Sum_probs=48.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEE-ccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIY-ADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~Dl~d~~~~~~~~~~~~~dv 148 (413)
.+|+|.|+ |.||...+..+...|+ +|++++++. +..+..+++ +. .+++. -|-...+.+.+.....++|+
T Consensus 29 ~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~----~r~~~a~~l---Ga-~~~i~~~~~~~~~~v~~~t~g~G~D~ 99 (174)
T d1jqba2 29 SSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRP----ICVEAAKFY---GA-TDILNYKNGHIEDQVMKLTNGKGVDR 99 (174)
T ss_dssp CCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCH----HHHHHHHHH---TC-SEEECGGGSCHHHHHHHHTTTSCEEE
T ss_pred CEEEEEcC-Ccchhhhhhhhhcccccccccccchh----hhHHHHHhh---Cc-cccccccchhHHHHHHHHhhccCcce
Confidence 68999985 9999999999888897 688876432 223333343 11 22221 12122344555544467999
Q ss_pred EEEcCcc
Q 015080 149 VMHFAAV 155 (413)
Q Consensus 149 vi~~Ag~ 155 (413)
+|.++|.
T Consensus 100 vid~~g~ 106 (174)
T d1jqba2 100 VIMAGGG 106 (174)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999984
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.67 E-value=0.0019 Score=53.86 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=28.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
|+|.|.| .|++|..+|..|++.|++|+++|.+
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n 32 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVS 32 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCC
Confidence 4578887 7999999999999999999999854
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.66 E-value=0.0011 Score=53.46 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=47.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
.+|+|.|+ |.+|...+..+...|++|++++++..+.+ ..+++ +.. +++.. ..+.+..+... ..+|+++
T Consensus 29 ~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~----~a~~l---Ga~-~~i~~-~~~~~~~~~~~--~~~d~vi 96 (168)
T d1piwa2 29 KKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKRE----DAMKM---GAD-HYIAT-LEEGDWGEKYF--DTFDLIV 96 (168)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHH----HHHHH---TCS-EEEEG-GGTSCHHHHSC--SCEEEEE
T ss_pred CEEEEECC-CCcchhHHHHhhhccccccccccchhHHH----Hhhcc---CCc-EEeec-cchHHHHHhhh--cccceEE
Confidence 78999996 99999988888888999999987554333 33333 222 22211 11222233333 5789999
Q ss_pred EcCccc
Q 015080 151 HFAAVA 156 (413)
Q Consensus 151 ~~Ag~~ 156 (413)
.+.+..
T Consensus 97 ~~~~~~ 102 (168)
T d1piwa2 97 VCASSL 102 (168)
T ss_dssp ECCSCS
T ss_pred EEecCC
Confidence 987753
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.00041 Score=56.73 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=46.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
.+|||+||+|++|...++.....|++|++++++..+. +.++++ +...+ .|..+.+ ..+.+.+...|.+|
T Consensus 33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~----~~~~~l-----Gad~v-i~~~~~~-~~~~l~~~~~~~vv 101 (177)
T d1o89a2 33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTH----EYLKSL-----GASRV-LPRDEFA-ESRPLEKQVWAGAI 101 (177)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGH----HHHHHH-----TEEEE-EEGGGSS-SCCSSCCCCEEEEE
T ss_pred CcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHH----HHHHhh-----ccccc-cccccHH-HHHHHHhhcCCeeE
Confidence 5899999999999999999999999999987644332 233333 12221 1221111 12233445679999
Q ss_pred EcCc
Q 015080 151 HFAA 154 (413)
Q Consensus 151 ~~Ag 154 (413)
++.|
T Consensus 102 D~Vg 105 (177)
T d1o89a2 102 DTVG 105 (177)
T ss_dssp ESSC
T ss_pred EEcc
Confidence 8876
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.002 Score=51.82 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=50.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
.+|+|.|+ |.||...+..+...|+++++++++..+ .+..+++. .. .+ .|..+.+...... .++|++|
T Consensus 32 ~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~----~~~a~~lG---ad-~~--i~~~~~~~~~~~~--~~~D~vi 98 (168)
T d1uufa2 32 KKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAK----REAAKALG---AD-EV--VNSRNADEMAAHL--KSFDFIL 98 (168)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGG----HHHHHHHT---CS-EE--EETTCHHHHHTTT--TCEEEEE
T ss_pred CEEEEecc-chHHHHHHHHhhcccccchhhccchhH----HHHHhccC---Cc-EE--EECchhhHHHHhc--CCCceee
Confidence 78999986 999999998888899999988753332 23334431 11 22 4666666554444 6899999
Q ss_pred EcCcc
Q 015080 151 HFAAV 155 (413)
Q Consensus 151 ~~Ag~ 155 (413)
.+.|.
T Consensus 99 d~~g~ 103 (168)
T d1uufa2 99 NTVAA 103 (168)
T ss_dssp ECCSS
T ss_pred eeeec
Confidence 99874
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=96.63 E-value=0.0029 Score=50.54 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=50.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCC----CCceEEEEccCCCHHHHHHHhhc---
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE----PGRLQFIYADLGDAKAVNKFFSE--- 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~--- 143 (413)
|+|-|.| .|-+|+.+|+.|++.|++|++.+|+..+.+...+.-...... -.+.+++..=+.+.+++++++..
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~ 79 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENG 79 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcc
Confidence 4588888 799999999999999999999987543332222110000000 12344555566677777766521
Q ss_pred -----CCCcEEEEcCc
Q 015080 144 -----NAFDAVMHFAA 154 (413)
Q Consensus 144 -----~~~dvvi~~Ag 154 (413)
.+-+++|++..
T Consensus 80 ~~~~~~~g~iiid~sT 95 (161)
T d1vpda2 80 IIEGAKPGTVLIDMSS 95 (161)
T ss_dssp HHHHCCTTCEEEECSC
T ss_pred hhhccCCCCEEEECCC
Confidence 22356776654
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=96.63 E-value=0.0021 Score=52.92 Aligned_cols=80 Identities=14% Similarity=0.117 Sum_probs=51.7
Q ss_pred eEEEE-EcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEE---ccCCCH-HHHHHHhhc--
Q 015080 71 THVLV-TGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIY---ADLGDA-KAVNKFFSE-- 143 (413)
Q Consensus 71 k~vlI-TGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~Dl~d~-~~~~~~~~~-- 143 (413)
.+++| +||+|++|...+......|++|+++.+.....++..+.++++.. . .++. .|..+. +.+.+....
T Consensus 30 ~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGa---d-~vi~~~~~~~~~~~~~v~~~~~~~g 105 (189)
T d1gu7a2 30 KDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGA---T-QVITEDQNNSREFGPTIKEWIKQSG 105 (189)
T ss_dssp TCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTC---S-EEEEHHHHHCGGGHHHHHHHHHHHT
T ss_pred CEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccc---c-EEEeccccchhHHHHHHHHHHhhcc
Confidence 44555 79999999999998888899999998766665556666666522 1 2222 122221 123333322
Q ss_pred CCCcEEEEcCc
Q 015080 144 NAFDAVMHFAA 154 (413)
Q Consensus 144 ~~~dvvi~~Ag 154 (413)
.++|+++++.|
T Consensus 106 ~~vdvv~D~vg 116 (189)
T d1gu7a2 106 GEAKLALNCVG 116 (189)
T ss_dssp CCEEEEEESSC
T ss_pred CCceEEEECCC
Confidence 56999999876
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.45 E-value=0.0049 Score=49.94 Aligned_cols=77 Identities=12% Similarity=0.010 Sum_probs=50.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC-HHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD-AKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~dv 148 (413)
.+|+|+|+ |++|...+..+...|+ +|++++.+..+. +..+++ +....+-.-|-.+ .+.+.+.....++|+
T Consensus 31 ~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl----~~Ak~~---GA~~~in~~~~~~~~~~~~~~~~g~G~d~ 102 (176)
T d1d1ta2 31 STCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKF----EKAMAV---GATECISPKDSTKPISEVLSEMTGNNVGY 102 (176)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGH----HHHHHH---TCSEEECGGGCSSCHHHHHHHHHTSCCCE
T ss_pred CEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHH----HHHHhc---CCcEEECccccchHHHHHHHHhccccceE
Confidence 78999985 9999999999999995 899987544332 333333 2222221123222 344555555578999
Q ss_pred EEEcCcc
Q 015080 149 VMHFAAV 155 (413)
Q Consensus 149 vi~~Ag~ 155 (413)
+|.+.|.
T Consensus 103 vi~~~g~ 109 (176)
T d1d1ta2 103 TFEVIGH 109 (176)
T ss_dssp EEECSCC
T ss_pred EEEeCCc
Confidence 9999874
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.40 E-value=0.0014 Score=52.94 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=28.8
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNL 103 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~ 103 (413)
||+|+|.| .|.||..+|+.|.+.|+ +|+++|++
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~ 35 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDIN 35 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 68999998 69999999999999986 68887654
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=96.39 E-value=0.0011 Score=54.58 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=32.9
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCch
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIG 109 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~ 109 (413)
.++|.|.|| |.+|+.+|..++..|++|+++|++....++
T Consensus 4 I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~ 42 (186)
T d1wdka3 4 VKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQ 42 (186)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhh
Confidence 368999996 999999999999999999999876544333
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.0065 Score=47.59 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=52.9
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHC--CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEcc-----------------
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD----------------- 130 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D----------------- 130 (413)
||+|.|.|+||-||.....-+.+. .++|.++.- .++.+.+.+++.+..+. ..+ ..|
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa-~~N~~~L~~q~~~f~pk---~v~-i~d~~~~~~l~~~l~~~~~~ 75 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVA-GKNVTRMVEQCLEFSPR---YAV-MDDEASAKLLKTMLQQQGSR 75 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEE-SSCHHHHHHHHHHHCCS---EEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEe-cCcHHHHHHHHHHHhhc---ccc-cccHHHHHHHHHHhhhhccc
Confidence 799999999999999999988887 468877763 34445566666665332 111 111
Q ss_pred ---CCCHHHHHHHhhcCCCcEEEEcC
Q 015080 131 ---LGDAKAVNKFFSENAFDAVMHFA 153 (413)
Q Consensus 131 ---l~d~~~~~~~~~~~~~dvvi~~A 153 (413)
+...+++.+++...++|+|++..
T Consensus 76 ~~~~~g~~~l~~~~~~~~~D~vi~AI 101 (151)
T d1q0qa2 76 TEVLSGQQAACDMAALEDVDQVMAAI 101 (151)
T ss_dssp CEEEESHHHHHHHHTCTTCCEEEECC
T ss_pred cccccChHHHHHHhcCCCCCEEEEec
Confidence 12345566666556789998765
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.38 E-value=0.0066 Score=48.98 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=45.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEE-EecCCCCCchhhhhhhhhcCCCCceEEEEccCCCH-HHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTI-VDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDA-KAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~~~dv 148 (413)
.+|+|.|+ |.||...+..+...|+++++ ++++ +...+..+++ .-.+++..+-.|. +.+.++ ...++|+
T Consensus 30 ~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~----~~k~~~a~~~----Ga~~~i~~~~~~~~~~i~~~-t~gg~D~ 99 (174)
T d1f8fa2 30 SSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIV----ESRLELAKQL----GATHVINSKTQDPVAAIKEI-TDGGVNF 99 (174)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESC----HHHHHHHHHH----TCSEEEETTTSCHHHHHHHH-TTSCEEE
T ss_pred CEEEEeCC-CHHHhhhhhcccccccceeeeeccH----HHHHHHHHHc----CCeEEEeCCCcCHHHHHHHH-cCCCCcE
Confidence 78999996 99999999988888986654 4432 2333444444 1223333322222 223333 2357999
Q ss_pred EEEcCcc
Q 015080 149 VMHFAAV 155 (413)
Q Consensus 149 vi~~Ag~ 155 (413)
+|.+.|.
T Consensus 100 vid~~G~ 106 (174)
T d1f8fa2 100 ALESTGS 106 (174)
T ss_dssp EEECSCC
T ss_pred EEEcCCc
Confidence 9999884
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.36 E-value=0.0072 Score=48.87 Aligned_cols=35 Identities=11% Similarity=0.259 Sum_probs=31.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG 106 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~ 106 (413)
.+|-|.| .|-+|..+|+.|++.|++|++++|+..+
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~~~~ 37 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHGFVVCAFNRTVSK 37 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSTHH
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCCHHH
Confidence 6799999 6999999999999999999999876543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.35 E-value=0.0052 Score=49.65 Aligned_cols=77 Identities=16% Similarity=0.053 Sum_probs=48.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC-HHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD-AKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~dv 148 (413)
.+|+|.|+ |++|...+..+...|+ +|++++++..+ .+..++. +....+...|-.+ .+.+.+.....++|+
T Consensus 30 dtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k----~~~a~~~---Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~ 101 (176)
T d2jhfa2 30 STCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDK----FAKAKEV---GATECVNPQDYKKPIQEVLTEMSNGGVDF 101 (176)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGG----HHHHHHT---TCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHH----HHHHHHh---CCeeEEecCCchhHHHHHHHHHhcCCCCE
Confidence 78999998 7899999999999986 77777653332 2223332 1122221223222 334444554478999
Q ss_pred EEEcCcc
Q 015080 149 VMHFAAV 155 (413)
Q Consensus 149 vi~~Ag~ 155 (413)
+|.+.|.
T Consensus 102 vid~~G~ 108 (176)
T d2jhfa2 102 SFEVIGR 108 (176)
T ss_dssp EEECSCC
T ss_pred EEecCCc
Confidence 9999884
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.32 E-value=0.0029 Score=50.70 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=28.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
|+|.|.| .|.+|+.+|+.|.+.|++|++++|+.
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g~~V~~~d~~~ 33 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQQ 33 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCc
Confidence 4588888 59999999999999999999998753
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.27 E-value=0.0017 Score=52.84 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=49.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
+.+ |+|+|.| +|+.+++++..|.+.| +|+++.|+..+.+++...+............-..|+.+. . ...
T Consensus 16 ~~~-k~vlIlG-aGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~ 84 (177)
T d1nvta1 16 VKD-KNIVIYG-AGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVD------L--DGV 84 (177)
T ss_dssp CCS-CEEEEEC-CSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCC------C--TTC
T ss_pred cCC-CEEEEEC-CcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhc------c--chh
Confidence 446 8999999 5999999999998777 899988765555555444443322111011111222221 1 568
Q ss_pred cEEEEcCccc
Q 015080 147 DAVMHFAAVA 156 (413)
Q Consensus 147 dvvi~~Ag~~ 156 (413)
|++||+-.+.
T Consensus 85 dliIn~tp~g 94 (177)
T d1nvta1 85 DIIINATPIG 94 (177)
T ss_dssp CEEEECSCTT
T ss_pred hhhccCCccc
Confidence 9999987654
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.27 E-value=0.012 Score=42.28 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=46.7
Q ss_pred ceEEEEEcCCChHH-HHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 70 VTHVLVTGGAGYIG-SHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 70 ~k~vlITGasG~IG-~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
+|+|.+.| -|++| ++||+.|.++|++|.+.|+.. ....+.+.+ .++.+..++-.+ .+ .+.|.
T Consensus 8 ~~~ihfiG-igG~GMs~LA~~L~~~G~~VsGSD~~~---~~~~~~L~~-----~Gi~v~~g~~~~------~i--~~~d~ 70 (96)
T d1p3da1 8 VQQIHFIG-IGGAGMSGIAEILLNEGYQISGSDIAD---GVVTQRLAQ-----AGAKIYIGHAEE------HI--EGASV 70 (96)
T ss_dssp CCEEEEET-TTSTTHHHHHHHHHHHTCEEEEEESCC---SHHHHHHHH-----TTCEEEESCCGG------GG--TTCSE
T ss_pred CCEEEEEE-ECHHHHHHHHHHHHhCCCEEEEEeCCC---ChhhhHHHH-----CCCeEEECCccc------cC--CCCCE
Confidence 38999998 47777 778999999999999998642 222233333 245555444321 12 46799
Q ss_pred EEEcCccc
Q 015080 149 VMHFAAVA 156 (413)
Q Consensus 149 vi~~Ag~~ 156 (413)
||...|+.
T Consensus 71 vV~S~AI~ 78 (96)
T d1p3da1 71 VVVSSAIK 78 (96)
T ss_dssp EEECTTSC
T ss_pred EEECCCcC
Confidence 99888864
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.18 E-value=0.0067 Score=49.00 Aligned_cols=76 Identities=18% Similarity=0.069 Sum_probs=48.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCC--HHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD--AKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~d 147 (413)
.+|+|.|+ |++|...+..+...|+ +|++++++..+ .+..+++ .-..++...-.| .+.+.......++|
T Consensus 29 ~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~k----l~~a~~l----Ga~~~i~~~~~d~~~~~~~~~~~~~G~d 99 (174)
T d1p0fa2 29 STCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDK----FPKAIEL----GATECLNPKDYDKPIYEVICEKTNGGVD 99 (174)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGG----HHHHHHT----TCSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHH----HHHHHHc----CCcEEEcCCCchhHHHHHHHHhcCCCCc
Confidence 78999995 9999999999999997 67887653322 2333333 112222211122 33444444446899
Q ss_pred EEEEcCcc
Q 015080 148 AVMHFAAV 155 (413)
Q Consensus 148 vvi~~Ag~ 155 (413)
++|.+.|.
T Consensus 100 ~vid~~g~ 107 (174)
T d1p0fa2 100 YAVECAGR 107 (174)
T ss_dssp EEEECSCC
T ss_pred EEEEcCCC
Confidence 99999874
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=96.15 E-value=0.00074 Score=55.76 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=31.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
+..|++|.|.| +|-.|.++|..|++.|++|++.+|+
T Consensus 4 ~~~m~KI~ViG-aG~wGtAlA~~La~~g~~V~l~~r~ 39 (189)
T d1n1ea2 4 LLYLNKAVVFG-SGAFGTALAMVLSKKCREVCVWHMN 39 (189)
T ss_dssp CCCEEEEEEEC-CSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred cceeceEEEEC-CCHHHHHHHHHHHHcCCeEEEEEec
Confidence 44568899999 5999999999999999999999764
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.10 E-value=0.0089 Score=47.85 Aligned_cols=82 Identities=18% Similarity=0.061 Sum_probs=52.7
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccC--CCHHHHHHHhhc
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL--GDAKAVNKFFSE 143 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~d~~~~~~~~~~ 143 (413)
++.| |+|+|.|-|.-+|+.++..|+++|+.|+.++...... ..+.. .. .-......|+ ..++.+++..
T Consensus 26 ~l~G-K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~--~~~~~-~~----~~~~~~~~~~~~~~~~~lk~~~-- 95 (171)
T d1edza1 26 RLYG-KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQK--FTRGE-SL----KLNKHHVEDLGEYSEDLLKKCS-- 95 (171)
T ss_dssp TTTT-CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEE--EESCC-CS----SCCCCEEEEEEECCHHHHHHHH--
T ss_pred CCCC-CEEEEECCccccHHHHHHHHHHCCCEEEEeccccccc--ccccc-ce----eeeeeccccccccchhHHhhcc--
Confidence 5678 9999999999999999999999999999875321110 00000 00 0001111222 3456677766
Q ss_pred CCCcEEEEcCcccC
Q 015080 144 NAFDAVMHFAAVAY 157 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~ 157 (413)
...|+||..+|...
T Consensus 96 ~~aDIvIsavG~p~ 109 (171)
T d1edza1 96 LDSDVVITGVPSEN 109 (171)
T ss_dssp HHCSEEEECCCCTT
T ss_pred ccCCEEEEccCCCc
Confidence 46799999888654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.10 E-value=0.01 Score=47.84 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=48.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCC--CHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG--DAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d~~~~~~~~~~~~~d 147 (413)
.+|+|.| .|.||...+..+...|+ +|++++.+.. ..+..+++ .-...+...-. ....+.+.....++|
T Consensus 30 ~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~----r~~~a~~~----Ga~~~i~~~~~~~~~~~~~~~~~~~G~d 100 (174)
T d1e3ia2 30 STCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGE----KFPKAKAL----GATDCLNPRELDKPVQDVITELTAGGVD 100 (174)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGG----GHHHHHHT----TCSEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CEEEEEC-CChHHHHHHHHHHHhCCceeeeeccchH----HHHHHHHh----CCCcccCCccchhhhhhhHhhhhcCCCc
Confidence 7899998 59999999999999998 5666654322 23333333 11222222111 234444444557899
Q ss_pred EEEEcCcc
Q 015080 148 AVMHFAAV 155 (413)
Q Consensus 148 vvi~~Ag~ 155 (413)
++|.+.|.
T Consensus 101 ~vie~~G~ 108 (174)
T d1e3ia2 101 YSLDCAGT 108 (174)
T ss_dssp EEEESSCC
T ss_pred EEEEeccc
Confidence 99999984
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.05 E-value=0.007 Score=45.76 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=30.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
++++|.| +|+||.++|..|.+.|.+|+++.+..
T Consensus 24 ~~~vIiG-~G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIG-GGIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CeEEEEC-CCchHHHHHHHHHhhCcceeEEEecc
Confidence 7899999 59999999999999999999997644
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.04 E-value=0.0036 Score=50.32 Aligned_cols=34 Identities=15% Similarity=0.339 Sum_probs=29.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSR 105 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~ 105 (413)
|+|+|.| +|+.+++++..|.+.|. +|.++.|+..
T Consensus 18 ~~vlIlG-aGGaarai~~aL~~~g~~~I~I~nR~~~ 52 (167)
T d1npya1 18 AKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVK 52 (167)
T ss_dssp SCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHH
T ss_pred CeEEEEC-CCHHHHHHHHHHHHCCCCEEEEecccHH
Confidence 7899999 59999999999999997 7888866543
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.01 E-value=0.014 Score=47.26 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=33.5
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~ 105 (413)
.+.+ |+|.|.| .|-||+.+++.|...|.+|+.+++...
T Consensus 39 ~l~g-k~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~ 76 (181)
T d1qp8a1 39 LIQG-EKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPK 76 (181)
T ss_dssp CCTT-CEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred cccC-ceEEEec-cccccccceeeeecccccccccccccc
Confidence 4678 9999999 699999999999999999999987543
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.96 E-value=0.0056 Score=49.97 Aligned_cols=31 Identities=23% Similarity=0.557 Sum_probs=26.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC-CEEEEEe
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVD 101 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G-~~V~~~~ 101 (413)
.+|.|.||||+.|++|++.|.++. .++..+.
T Consensus 6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~ 37 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMT 37 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence 789999999999999999999984 3666554
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.95 E-value=0.077 Score=40.10 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=56.5
Q ss_pred eEEEEEcCC---ChHHHHHHHHHHHCC-CEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 71 THVLVTGGA---GYIGSHAALRLLKDS-YRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGas---G~IG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
++|.|.||| +..|..+.+.|.+.| .+|+.+. ++ .++. .++. ..-++.|.. ..+
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVn--P~-~~~i-----------~G~~-~y~sl~dlp--------~~v 65 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVN--IK-EEEV-----------QGVK-AYKSVKDIP--------DEI 65 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEEC--SS-CSEE-----------TTEE-CBSSTTSCS--------SCC
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEec--cC-cccc-----------CCeE-eecchhhcC--------CCC
Confidence 899999998 999999999998766 5888874 22 1111 0111 112443322 578
Q ss_pred cEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 147 DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 147 dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
|.++-+.. ...+..+++.+.+.+++.++.+|+
T Consensus 66 Dlvvi~vp------------------~~~~~~~~~~~~~~g~~~~vi~s~ 97 (129)
T d2csua1 66 DLAIIVVP------------------KRFVKDTLIQCGEKGVKGVVIITA 97 (129)
T ss_dssp SEEEECSC------------------HHHHHHHHHHHHHHTCCEEEECCC
T ss_pred ceEEEecC------------------hHHhHHHHHHHHHcCCCEEEEecc
Confidence 98885432 122455788888889999999888
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.90 E-value=0.013 Score=47.09 Aligned_cols=76 Identities=21% Similarity=0.210 Sum_probs=47.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
.+|+|.|+ |.+|...+..+...|+ +|++++++. +..+.+++. ...+++..+=.+.+.+.+.....++|++
T Consensus 34 ~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~----~k~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 34 AYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKE----EKLKLAERL----GADHVVDARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSH----HHHHHHHHT----TCSEEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred CEEEEeCC-ChHHHHHHHHHHhhcCcccccccchh----HHHHHHhhc----ccceeecCcccHHHHHHHhhCCCCceEE
Confidence 78999985 9999999998888886 556665432 233344443 2223433332233444444444679999
Q ss_pred EEcCcc
Q 015080 150 MHFAAV 155 (413)
Q Consensus 150 i~~Ag~ 155 (413)
|.++|.
T Consensus 105 id~~g~ 110 (172)
T d1h2ba2 105 MDFVGS 110 (172)
T ss_dssp EESSCC
T ss_pred EEecCc
Confidence 999984
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=95.87 E-value=0.022 Score=48.57 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=30.1
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNL 103 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~ 103 (413)
+.+ ++|+|.| .|++|++++..|+..|. +++++|..
T Consensus 28 L~~-~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 28 LKD-SRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp HHH-CEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HhC-CCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCc
Confidence 445 8999999 69999999999999998 78888743
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.85 E-value=0.0042 Score=50.56 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=47.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCC-CceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEP-GRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
|+|.|.| +|-.|.++|..|+++|++|.+.+|.. .++..+.+++...++ ........++.-.+++.+++ .+.|+|
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g~~V~l~~r~~--~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~ad~I 75 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNGNEVRIWGTEF--DTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCL--ENAEVV 75 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCCEEEEECCGG--GHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHH--TTCSEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEecc--cHHHHHHHhhhhhhhhhcchhccccccccccHHHHH--hccchh
Confidence 5788999 59999999999999999999987522 223333343322110 01111111223344567777 678999
Q ss_pred EEcC
Q 015080 150 MHFA 153 (413)
Q Consensus 150 i~~A 153 (413)
|.+-
T Consensus 76 i~av 79 (180)
T d1txga2 76 LLGV 79 (180)
T ss_dssp EECS
T ss_pred hccc
Confidence 8653
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.83 E-value=0.0043 Score=49.11 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY 95 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~ 95 (413)
=+|.|.||||++|.+|++.|.++.+
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~f 26 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTL 26 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCS
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCC
Confidence 3799999999999999999988864
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.76 E-value=0.0055 Score=50.55 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=47.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCC--C-HHHHHHHhhcCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG--D-AKAVNKFFSENAF 146 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d-~~~~~~~~~~~~~ 146 (413)
.+|+|.|+ |.+|...+..+...|+ +|++++.+. ...+..++. ++..+. |-. + .+.+.++....++
T Consensus 27 ~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~----~rl~~a~~~-----Ga~~~~-~~~~~~~~~~i~~~t~g~g~ 95 (195)
T d1kola2 27 STVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNP----ARLAHAKAQ-----GFEIAD-LSLDTPLHEQIAALLGEPEV 95 (195)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCH----HHHHHHHHT-----TCEEEE-TTSSSCHHHHHHHHHSSSCE
T ss_pred CEEEEECc-CHHHHHHHHHHHhhcccceeeecccc----hhhHhhhhc-----cccEEE-eCCCcCHHHHHHHHhCCCCc
Confidence 79999985 9999888888877887 677776432 222333332 233322 222 2 2345555544689
Q ss_pred cEEEEcCcc
Q 015080 147 DAVMHFAAV 155 (413)
Q Consensus 147 dvvi~~Ag~ 155 (413)
|++|.+.|.
T Consensus 96 D~vid~vG~ 104 (195)
T d1kola2 96 DCAVDAVGF 104 (195)
T ss_dssp EEEEECCCT
T ss_pred EEEEECccc
Confidence 999999884
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.75 E-value=0.0058 Score=45.84 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=30.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
++|+|.|| |++|.++|..|...|.+|+++.|..
T Consensus 23 ~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 23 KKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp SEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence 78999994 9999999999999999999998754
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.73 E-value=0.01 Score=47.79 Aligned_cols=76 Identities=14% Similarity=0.032 Sum_probs=45.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCE-EEEEecCCCCCchhhhhhhhhcCCCCceEEEEc-c-CCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYA-D-LGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-D-l~d~~~~~~~~~~~~~d 147 (413)
.+|+|.|+ |++|...+..+...|+. |++++++ ++..+..+++. . .+++.. + -.+...+.+.....++|
T Consensus 30 ~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~----~~k~~~ak~lG---a-~~~i~~~~~~~~~~~~~~~~~~~g~D 100 (176)
T d2fzwa2 30 SVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDIN----KDKFARAKEFG---A-TECINPQDFSKPIQEVLIEMTDGGVD 100 (176)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSC----GGGHHHHHHHT---C-SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CEEEEecc-hhHHHHHHHHHHHHhcCceEEEccc----HHHHHHHHHhC---C-cEEEeCCchhhHHHHHHHHHcCCCCc
Confidence 78999997 68999999999999975 5555432 22233344431 1 222222 1 12333444444447899
Q ss_pred EEEEcCcc
Q 015080 148 AVMHFAAV 155 (413)
Q Consensus 148 vvi~~Ag~ 155 (413)
++|.+.|.
T Consensus 101 ~vid~~G~ 108 (176)
T d2fzwa2 101 YSFECIGN 108 (176)
T ss_dssp EEEECSCC
T ss_pred EeeecCCC
Confidence 99999873
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.67 E-value=0.0096 Score=47.46 Aligned_cols=32 Identities=22% Similarity=0.162 Sum_probs=28.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
.+|+|.|+ |.||...+..+...|++|++++++
T Consensus 29 ~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~ 60 (166)
T d1llua2 29 QWVAISGI-GGLGHVAVQYARAMGLHVAAIDID 60 (166)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEeec-cccHHHHHHHHHHcCCccceecch
Confidence 78999885 999999999888899999998754
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.0036 Score=51.59 Aligned_cols=41 Identities=29% Similarity=0.323 Sum_probs=34.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhh
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVK 112 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~ 112 (413)
|+|.|.|| |.+|+.+|..++..|++|+++|++....+...+
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~ 45 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKK 45 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHHHHh
Confidence 78999996 999999999999999999999876554444333
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.48 E-value=0.01 Score=44.39 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=30.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~ 105 (413)
++++|.| .|++|.++|..|.+.|.+|+++.|..+
T Consensus 23 ~~v~IiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 23 KSLVVIG-GGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEEC-CCccceeeeeeecccccEEEEEEecce
Confidence 7899999 499999999999999999999986543
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=95.45 E-value=0.034 Score=43.27 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=35.7
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHC--CCEEEEEecCCCCCchhhhhhhhh
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNIGAVKVLQEL 117 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~ 117 (413)
||+|.|.|+||-||.....-+.+. .++|+++.-. ++.+.+.+++++.
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~-~N~~~L~~q~~ef 50 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTAN-RNVKDLADAAKRT 50 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEES-SCHHHHHHHHHHT
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeC-CCHHHHHHHHHhh
Confidence 389999999999999999999876 5788877642 3445556666554
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.43 E-value=0.013 Score=44.17 Aligned_cols=33 Identities=42% Similarity=0.663 Sum_probs=30.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
|+|+|.| +|++|.++|..|.+.|.+|+++.+..
T Consensus 31 k~vvViG-gG~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 31 NNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CEEEEEC-ChHHHHHHHHHhhccceEEEEEEecC
Confidence 7899998 59999999999999999999998754
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=95.42 E-value=0.011 Score=44.53 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=30.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~ 105 (413)
++++|.| +|++|.++|..|.+.|.+|+++.+..+
T Consensus 31 ~~vvIIG-gG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 31 SRLLIVG-GGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEEC-cchhHHHHHHHhhcccceEEEEeeccc
Confidence 7899999 599999999999999999999987554
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.32 E-value=0.017 Score=43.21 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=30.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~ 105 (413)
++++|.| +|+||.++|..|++.|.+|+++.+..+
T Consensus 23 ~~i~IiG-~G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 23 GKLGVIG-AGVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEEC-CChHHHHHHHHHHHcCCceEEEEeecc
Confidence 7899999 599999999999999999999986543
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=95.29 E-value=0.024 Score=43.01 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=26.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIV 100 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~ 100 (413)
|+|.|.|++|-+|+.+++.+.+.|++++..
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~ 30 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLK 30 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEE
Confidence 469999999999999999999999988653
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.25 E-value=0.011 Score=44.59 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=29.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
++++|.| +|+||.++|..|.+.|.+|+++.++
T Consensus 21 ~~vvIIG-gG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVG-ASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEEC-CCccHHHHHHHHhhcCCeEEEEEec
Confidence 6799999 5999999999999999999999753
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.012 Score=44.49 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=30.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~ 105 (413)
|+++|.| +|+||.++|..|.+.|.+|+++.|..+
T Consensus 23 k~vvIvG-gG~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 23 GRSVIVG-AGYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEEc-CCccHHHHHHHHhcCCcEEEEEeeccc
Confidence 7899999 599999999999999999999987543
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.18 E-value=0.018 Score=42.91 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=30.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~ 105 (413)
++++|.| +|++|.++|..|.+.|.+|+++.+..+
T Consensus 22 ~~vvIiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 22 ERVAVVG-AGYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEEC-CChhhHHHHHHhhccccEEEEEeecch
Confidence 6899999 599999999999999999999987543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.17 E-value=0.012 Score=44.79 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=48.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
|+++|.| -|-+|+++++.|. |.+|++++.+... .+.+.. .++.++.+|.++++.++++-- .+.+.+|
T Consensus 1 kHivI~G-~g~~g~~l~~~L~--~~~i~vi~~d~~~----~~~~~~-----~~~~~i~Gd~~~~~~L~~a~i-~~A~~vi 67 (129)
T d2fy8a1 1 RHVVICG-WSESTLECLRELR--GSEVFVLAEDENV----RKKVLR-----SGANFVHGDPTRVSDLEKANV-RGARAVI 67 (129)
T ss_dssp CCEEEES-CCHHHHHHHHTSC--GGGEEEEESCTTH----HHHHHH-----TTCEEEESCTTSHHHHHHTTC-TTCSEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHc--CCCCEEEEcchHH----HHHHHh-----cCccccccccCCHHHHHHhhh-hcCcEEE
Confidence 5789998 5889999999994 5667777643322 222221 478899999999998877532 4678887
Q ss_pred Ec
Q 015080 151 HF 152 (413)
Q Consensus 151 ~~ 152 (413)
-+
T Consensus 68 ~~ 69 (129)
T d2fy8a1 68 VN 69 (129)
T ss_dssp EC
T ss_pred Ee
Confidence 44
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.15 E-value=0.021 Score=45.55 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=32.8
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEec
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 102 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r 102 (413)
++.| |+|+|.|-|.-+|+.|+..|+++|++|+.+..
T Consensus 36 ~l~G-k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~ 71 (170)
T d1a4ia1 36 PIAG-RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHS 71 (170)
T ss_dssp CCTT-CEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred cccc-ceEEEEecCCccchHHHHHHHhccCceEEEec
Confidence 3567 99999999999999999999999999999864
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.016 Score=39.61 Aligned_cols=32 Identities=22% Similarity=0.076 Sum_probs=29.7
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEec
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 102 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r 102 (413)
||+|.|.| +|.+|+-++..-.+.|++|++++-
T Consensus 1 ~k~vgIlG-~GQLgrMl~~Aa~~LG~~v~vldp 32 (78)
T d3etja2 1 MKQVCVLG-NGQLGRMLRQAGEPLGIAVWPVGL 32 (78)
T ss_dssp CEEEEEEB-CSHHHHHHHHHHGGGTEEEEEECT
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEcC
Confidence 68999999 699999999999999999999874
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=95.08 E-value=0.045 Score=44.92 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=31.4
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEec
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 102 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r 102 (413)
.+.+ |+|.|-| .|-+|+++++.|.+.|++|++.+.
T Consensus 24 ~L~g-k~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~ 58 (201)
T d1c1da1 24 SLDG-LTVLVQG-LGAVGGSLASLAAEAGAQLLVADT 58 (201)
T ss_dssp CSTT-CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCC-CEEEEEC-CCHHHHHHHHHHHHCCCEEEEecc
Confidence 3667 9999999 799999999999999999998764
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.08 E-value=0.027 Score=44.57 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=31.9
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEe
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVD 101 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~ 101 (413)
.+.| |+|+|.|-|.-+|+.|+..|.++|++|+++.
T Consensus 34 ~l~G-K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h 68 (166)
T d1b0aa1 34 DTFG-LNAVVIGASNIVGRPMSMELLLAGCTTTVTH 68 (166)
T ss_dssp CCTT-CEEEEECCCTTTHHHHHHHHHTTTCEEEEEC
T ss_pred cccc-ceEEEEeccccccHHHHHHHHHhhccccccc
Confidence 3557 9999999999999999999999999999875
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.05 E-value=0.014 Score=43.88 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=29.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
++++|.| +|++|.++|..|.+.|.+|+++.+..
T Consensus 33 ~~vvIiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~ 65 (122)
T d1xhca2 33 GEAIIIG-GGFIGLELAGNLAEAGYHVKLIHRGA 65 (122)
T ss_dssp SEEEEEE-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEEC-CcHHHHHHHHHhhcccceEEEEeccc
Confidence 7899999 59999999999999999999997643
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=95.00 E-value=0.059 Score=37.84 Aligned_cols=69 Identities=20% Similarity=0.210 Sum_probs=45.2
Q ss_pred eEEEEEcCCChHHH-HHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGS-HAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~-~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
|+|.+.| -|++|. .||+.|.++|+.|...|+.. ....+.+++. ++.+..+. +++. + .++|+|
T Consensus 2 ~~ihfiG-IgG~GMs~LA~~L~~~G~~VsGSD~~~---~~~t~~L~~~-----Gi~i~~gh--~~~~----i--~~~d~v 64 (89)
T d1j6ua1 2 MKIHFVG-IGGIGMSAVALHEFSNGNDVYGSNIEE---TERTAYLRKL-----GIPIFVPH--SADN----W--YDPDLV 64 (89)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEECSSC---CHHHHHHHHT-----TCCEESSC--CTTS----C--CCCSEE
T ss_pred cEEEEEe-ECHHHHHHHHHHHHhCCCeEEEEeCCC---ChhHHHHHHC-----CCeEEeee--cccc----c--CCCCEE
Confidence 5788888 577776 78999999999999998642 2333344443 34444331 1111 2 468999
Q ss_pred EEcCccc
Q 015080 150 MHFAAVA 156 (413)
Q Consensus 150 i~~Ag~~ 156 (413)
|...++.
T Consensus 65 V~SsAI~ 71 (89)
T d1j6ua1 65 IKTPAVR 71 (89)
T ss_dssp EECTTCC
T ss_pred EEecCcC
Confidence 9988874
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.94 E-value=0.0065 Score=47.88 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=27.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
|+|.+.| +|-+|+++++.|.+.|++|++.+|+
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~ 32 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPHELIISGSS 32 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCCeEEEEcCh
Confidence 4577778 7999999999999999999998654
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.80 E-value=0.015 Score=43.32 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=29.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
++++|.| +|++|.++|..|.+.|++|+++.+..
T Consensus 22 ~~vvIiG-gG~~G~E~A~~l~~~g~~Vtlve~~~ 54 (115)
T d1lvla2 22 QHLVVVG-GGYIGLELGIAYRKLGAQVSVVEARE 54 (115)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEEC-CCHHHHHHHHHHhhcccceEEEeeec
Confidence 7899999 59999999999999999999997644
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.66 E-value=0.044 Score=44.50 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=32.8
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
.+.+ ++|.|.| .|.||+.+++.|..-|.+|+..++..
T Consensus 41 ~l~~-~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d1sc6a1 41 EARG-KKLGIIG-YGHIGTQLGILAESLGMYVYFYDIEN 77 (188)
T ss_dssp CSTT-CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cccc-eEEEEee-cccchhhhhhhcccccceEeeccccc
Confidence 5667 8999998 79999999999999999999998643
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.63 E-value=0.055 Score=40.54 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=53.7
Q ss_pred eEEEEEcCCC----------hHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHH
Q 015080 71 THVLVTGGAG----------YIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKF 140 (413)
Q Consensus 71 k~vlITGasG----------~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 140 (413)
|+|||.|+.. +-+.+.++.|.+.|++++++..++..-.--. .-..-+...-...+.+.+.
T Consensus 8 kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~----------d~aD~lYfePlt~e~v~~I 77 (127)
T d1a9xa3 8 KSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDP----------EMADATYIEPIHWEVVRKI 77 (127)
T ss_dssp CEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCG----------GGSSEEECSCCCHHHHHHH
T ss_pred CEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcCh----------hhcceeeeecCCHHHHHHH
Confidence 8999999733 5788999999999999999865443322111 1233344556678899999
Q ss_pred hhcCCCcEEEEcCc
Q 015080 141 FSENAFDAVMHFAA 154 (413)
Q Consensus 141 ~~~~~~dvvi~~Ag 154 (413)
++..++|.|+-..|
T Consensus 78 i~~E~pd~il~~~G 91 (127)
T d1a9xa3 78 IEKERPDAVLPTMG 91 (127)
T ss_dssp HHHHCCSEEECSSS
T ss_pred HHHhCcCCeEEEee
Confidence 99999999986555
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.63 E-value=0.027 Score=44.60 Aligned_cols=101 Identities=19% Similarity=0.244 Sum_probs=67.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
-+|+|.|| |-.|.+-++.....|++|.++|.+.. ..+.++.... ..++ .-..+.+.+.+.+ .+.|+||
T Consensus 33 a~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~----~l~~l~~~~~--~~~~---~~~~~~~~l~~~~--~~aDivI 100 (168)
T d1pjca1 33 GKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVE----RLSYLETLFG--SRVE---LLYSNSAEIETAV--AEADLLI 100 (168)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHG--GGSE---EEECCHHHHHHHH--HTCSEEE
T ss_pred cEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHH----HHHHHHHhhc--ccce---eehhhhhhHHHhh--ccCcEEE
Confidence 68999995 99999999999999999999986433 3333333322 2333 3346778888888 6789999
Q ss_pred EcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 151 HFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 151 ~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
.++-+...+. | ..-++..++.|++. .-||=+|.
T Consensus 101 ~aalipG~~a----P-------~lIt~~mv~~Mk~G--SVIVDvai 133 (168)
T d1pjca1 101 GAVLVPGRRA----P-------ILVPASLVEQMRTG--SVIVDVAV 133 (168)
T ss_dssp ECCCCTTSSC----C-------CCBCHHHHTTSCTT--CEEEETTC
T ss_pred EeeecCCccc----C-------eeecHHHHhhcCCC--cEEEEeec
Confidence 9987643221 1 01144566666543 35666666
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=94.60 E-value=0.022 Score=43.49 Aligned_cols=34 Identities=35% Similarity=0.639 Sum_probs=30.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~ 105 (413)
++|+|.| +|++|.++|..|.+.|.+|+++.+..+
T Consensus 36 k~v~VIG-gG~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 36 NRLVVIG-GGYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEEC-CchHHHHHHHHHHhhCcceeeeeeccc
Confidence 7899999 599999999999999999999987554
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.56 E-value=0.086 Score=45.62 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=30.5
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEe
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVD 101 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~ 101 (413)
.+.+ |+|+|-| .|-+|+++|+.|.+.|++|+.++
T Consensus 33 ~L~g-ktvaIqG-fGnVG~~~A~~L~e~Gakvv~vs 66 (293)
T d1hwxa1 33 GFGD-KTFAVQG-FGNVGLHSMRYLHRFGAKCVAVG 66 (293)
T ss_dssp SSTT-CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCC-CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEE
Confidence 4567 9999999 69999999999999999998775
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=94.55 E-value=0.0052 Score=49.51 Aligned_cols=118 Identities=12% Similarity=0.015 Sum_probs=65.3
Q ss_pred eEEEEEcCCChHHHH--HHHHHHHC----CCEEEEEecCCCCCchhhhhhhhhcC-CCCceEEEEccCCCHHHHHHHhhc
Q 015080 71 THVLVTGGAGYIGSH--AALRLLKD----SYRVTIVDNLSRGNIGAVKVLQELFP-EPGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 71 k~vlITGasG~IG~~--la~~L~~~----G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
++|.|.|| |.+|.. ++..|+.. +.+++++|++..+.+.....+++... .+....+... +| .++++
T Consensus 3 mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~--td---~~eaL-- 74 (171)
T d1obba1 3 VKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT--MN---LDDVI-- 74 (171)
T ss_dssp CEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE--SC---HHHHH--
T ss_pred cEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe--CC---hhhcc--
Confidence 68889996 878865 34445443 46999999765544333333332211 1223333322 22 34456
Q ss_pred CCCcEEEEcCcccCccCCcCChHH------------------------HHHHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 144 NAFDAVMHFAAVAYVGESTLDPLK------------------------YYHNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~~~~~~~~~~------------------------~~~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
.+.|+|++.+++........+... ....|+.-.+.+++.+++.+.. .++++|.
T Consensus 75 ~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TN 152 (171)
T d1obba1 75 IDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAAN 152 (171)
T ss_dssp TTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred cCCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECC
Confidence 789999999886432110000000 0124777788899999988654 4454443
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.54 E-value=0.012 Score=54.52 Aligned_cols=77 Identities=18% Similarity=0.329 Sum_probs=50.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCch-------------------hhhhhhhhcCCCCceEEEEcc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIG-------------------AVKVLQELFPEPGRLQFIYAD 130 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~D 130 (413)
.+|||.|+ |+||.++++.|+..|. +++++|...=.... +++.++++.+. -++..+..+
T Consensus 38 ~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~-v~i~~~~~~ 115 (426)
T d1yovb1 38 CKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN-CNVVPHFNK 115 (426)
T ss_dssp CCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTT-CCCEEECSC
T ss_pred CeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCC-CceEeeecc
Confidence 68999996 8899999999999998 78888754211111 22334444332 456666666
Q ss_pred CCCHHHHHHHhhcCCCcEEEEcC
Q 015080 131 LGDAKAVNKFFSENAFDAVMHFA 153 (413)
Q Consensus 131 l~d~~~~~~~~~~~~~dvvi~~A 153 (413)
+.+.. .+++ .++|+||.+.
T Consensus 116 i~~~~--~~~~--~~~DlVi~~~ 134 (426)
T d1yovb1 116 IQDFN--DTFY--RQFHIIVCGL 134 (426)
T ss_dssp GGGBC--HHHH--TTCSEEEECC
T ss_pred ccchH--HHHH--Hhcchheecc
Confidence 65533 2455 5789998764
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=94.52 E-value=0.025 Score=47.82 Aligned_cols=32 Identities=38% Similarity=0.558 Sum_probs=29.8
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
|+|+|.| +|..|..+|..|+++|++|++++|.
T Consensus 7 ~kVvVIG-aGiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 7 KRVVVLG-SGVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CcEEEEC-ccHHHHHHHHHHHHCCCCEEEEeCC
Confidence 7899999 5999999999999999999999874
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=94.47 E-value=0.022 Score=46.90 Aligned_cols=38 Identities=24% Similarity=0.121 Sum_probs=33.5
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~ 105 (413)
.+.+ |+|.|.| .|-||+.+++.|..-|.+|+++++...
T Consensus 42 ~l~~-ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~ 79 (199)
T d1dxya1 42 ELGQ-QTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPM 79 (199)
T ss_dssp CGGG-SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred cccc-eeeeeee-cccccccccccccccceeeeccCCccc
Confidence 5667 9999999 799999999999999999999986443
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.41 E-value=0.024 Score=45.02 Aligned_cols=31 Identities=26% Similarity=0.168 Sum_probs=27.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEec
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 102 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r 102 (413)
.+|+|.|+ |.||...+..+...|++|+++++
T Consensus 29 ~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~ 59 (168)
T d1rjwa2 29 EWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDI 59 (168)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEEEECS
T ss_pred CEEEEeec-ccchhhhhHHHhcCCCeEeccCC
Confidence 78999875 99999999999999999998864
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=94.40 E-value=0.081 Score=44.23 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=31.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEec
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 102 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r 102 (413)
++.+ |+|+|-| .|-+|+++++.|.+.|++|++.+.
T Consensus 36 ~l~g-~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~ 70 (230)
T d1leha1 36 SLEG-LAVSVQG-LGNVAKALCKKLNTEGAKLVVTDV 70 (230)
T ss_dssp CCTT-CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCC-CEEEEEC-CCHHHHHHHHHHHHCCCEEEeecc
Confidence 3557 9999999 799999999999999999998764
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=94.39 E-value=0.021 Score=46.77 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=33.5
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~ 105 (413)
.+.+ |++.|.| .|-||+.+++.|..-|.+|+..++...
T Consensus 46 eL~g-ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~ 83 (193)
T d1mx3a1 46 RIRG-ETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLS 83 (193)
T ss_dssp CCTT-CEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred eeeC-ceEEEec-cccccccceeeeeccccceeeccCccc
Confidence 5678 9999999 799999999999999999999986443
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=94.34 E-value=0.11 Score=42.42 Aligned_cols=36 Identities=22% Similarity=0.123 Sum_probs=32.8
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
.+.+ |+|.|.| .|-||+.+|+.|..-|.+|++.++.
T Consensus 40 el~g-k~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~ 75 (197)
T d1j4aa1 40 EVRD-QVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIF 75 (197)
T ss_dssp CGGG-SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cccC-CeEEEec-ccccchhHHHhHhhhcccccccCcc
Confidence 5778 9999999 7999999999999999999998754
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.016 Score=45.69 Aligned_cols=35 Identities=29% Similarity=0.259 Sum_probs=31.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
+.+ |+++|.| .|.||+.+|+.|...|.+|++++..
T Consensus 22 l~G-k~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~d 56 (163)
T d1li4a1 22 IAG-KVAVVAG-YGDVGKGCAQALRGFGARVIITEID 56 (163)
T ss_dssp CTT-CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred ecC-CEEEEec-cccccHHHHHHHHhCCCeeEeeecc
Confidence 457 9999999 8999999999999999999998753
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=94.32 E-value=0.037 Score=41.26 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=30.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
++++|.| +|+||.++|..|.+.|.+|.++.+..
T Consensus 23 ~~vvVvG-gG~ig~E~A~~l~~~g~~vt~i~~~~ 55 (121)
T d1mo9a2 23 STVVVVG-GSKTAVEYGCFFNATGRRTVMLVRTE 55 (121)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcchhheEeeccc
Confidence 7899999 59999999999999999999998754
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=94.30 E-value=0.0088 Score=48.37 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=29.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
|+|-|.| .|-+|.++++.|++.|++|.+.+|+.
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGFKVAVFNRTY 34 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCH
Confidence 5688888 89999999999999999999997643
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.26 E-value=0.018 Score=43.39 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=30.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~ 105 (413)
++++|.| +|+||.++|..|.+.|.+|+++.|..+
T Consensus 26 ~~~viiG-~G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 26 KKLVVIG-AGYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp SEEEESC-CSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEEc-cchHHHHHHHHHHhcCCeEEEEEEccc
Confidence 7899999 599999999999999999999977544
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=94.23 E-value=0.023 Score=42.91 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=29.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
++++|.| +|+||.++|..|.+.|.+|+++.+..
T Consensus 27 ~~vvIiG-gG~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 27 GKLLIIG-GGIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp SEEEEES-CSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEEC-CCHHHHHHHHHhhcCCCEEEEEEeec
Confidence 7899999 59999999999999999999997643
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.18 E-value=0.18 Score=38.30 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=23.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHC-CCEEEE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKD-SYRVTI 99 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~-G~~V~~ 99 (413)
+|.|.|++|-+|+.+++.+.+. ++++..
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~ 29 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSA 29 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEE
Confidence 6899999999999999988765 667654
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.05 E-value=0.092 Score=40.89 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=44.2
Q ss_pred eEEEEE-cCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVT-GGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlIT-GasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
+.++|. .+.|+||.++|..|++.|++|+++.+...-.. . .|-.....+.+.+.+.+++++
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~----~---------------~~~~~~~~~~~~l~~~GV~i~ 100 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANY----M---------------HFTLEYPNMMRRLHELHVEEL 100 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTH----H---------------HHTTCHHHHHHHHHHTTCEEE
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccc----c---------------cchhHHHHHHHHHhhccceEE
Confidence 455554 35699999999999999999999986433211 1 233455666777766777776
Q ss_pred EEcC
Q 015080 150 MHFA 153 (413)
Q Consensus 150 i~~A 153 (413)
.+..
T Consensus 101 ~~~~ 104 (156)
T d1djqa2 101 GDHF 104 (156)
T ss_dssp ETEE
T ss_pred eccE
Confidence 6543
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.02 E-value=0.16 Score=37.45 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=53.2
Q ss_pred eEEEEEcCCC----------hHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHH
Q 015080 71 THVLVTGGAG----------YIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKF 140 (413)
Q Consensus 71 k~vlITGasG----------~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 140 (413)
|+|||.|+.. +-+.+.++.|.+.|++++++..++..-.-- ..-..-+...-...+.+.+.
T Consensus 5 kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd----------~d~aD~lYfeplt~e~v~~I 74 (121)
T d1a9xa4 5 EKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTD----------YDTSDRLYFEPVTLEDVLEI 74 (121)
T ss_dssp CEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTS----------TTSSSEEECCCCSHHHHHHH
T ss_pred CEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcC----------hhhcCceEEccCCHHHHHHH
Confidence 8899999633 678999999999999999986554432210 12233344555678889999
Q ss_pred hhcCCCcEEEEcCc
Q 015080 141 FSENAFDAVMHFAA 154 (413)
Q Consensus 141 ~~~~~~dvvi~~Ag 154 (413)
++..++|.|+-..|
T Consensus 75 i~~E~p~~ii~~~G 88 (121)
T d1a9xa4 75 VRIEKPKGVIVQYG 88 (121)
T ss_dssp HHHHCCSEEECSSS
T ss_pred HHHhCCCEEEeehh
Confidence 98889998875544
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.97 E-value=0.026 Score=44.00 Aligned_cols=34 Identities=24% Similarity=0.528 Sum_probs=31.2
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEe
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVD 101 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~ 101 (413)
++++ |+|||.|| |.+|..-++.|++.|++|++++
T Consensus 10 ~l~g-krvLViGg-G~va~~ka~~Ll~~GA~VtVva 43 (150)
T d1kyqa1 10 QLKD-KRILLIGG-GEVGLTRLYKLMPTGCKLTLVS 43 (150)
T ss_dssp CCTT-CEEEEEEE-SHHHHHHHHHHGGGTCEEEEEE
T ss_pred eeCC-CEEEEECC-CHHHHHHHHHHHHCCCEEEEEe
Confidence 4667 99999996 9999999999999999999986
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.96 E-value=0.043 Score=44.45 Aligned_cols=37 Identities=30% Similarity=0.224 Sum_probs=32.3
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
.+.+ |++.|.| .|.||+++++.+..-|.+|+..++..
T Consensus 41 ~l~~-k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~ 77 (184)
T d1ygya1 41 EIFG-KTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYV 77 (184)
T ss_dssp CCTT-CEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred cccc-eeeeecc-ccchhHHHHHHhhhccceEEeecCCC
Confidence 4667 8999999 69999999999999999999987643
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=93.92 E-value=0.051 Score=43.70 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=31.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~ 105 (413)
|+|+|.| +|.-|.+.|..|+++|++|+++.+...
T Consensus 44 k~V~IIG-aGPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 44 KNLAVVG-AGPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred cEEEEEC-ccHHHHHHHHHHHhhccceEEEeccCc
Confidence 8999999 599999999999999999999987543
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=93.75 E-value=0.11 Score=40.89 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=54.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-CCEEEE-EecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-SYRVTI-VDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDA 148 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dv 148 (413)
.+|.|.|++|-+|+.+++.+.+. +.+++. +++... ....+.+.++......-..+.-|+. .++ ..+|+
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~--~~~g~d~~~~~~~~~~~~~~~~~~~------~~~--~~~DV 74 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGS--SLLGSDAGELAGAGKTGVTVQSSLD------AVK--DDFDV 74 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTC--TTCSCCTTCSSSSSCCSCCEESCST------TTT--TSCSE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccc--hhccchhhhhhccccCCceeeccHH------HHh--cccce
Confidence 78999999999999999999886 666653 333211 1111111111111111111223332 233 57899
Q ss_pred EEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 149 VMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 149 vi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
||...- + .++...++.+.+.++ .+|.=+|
T Consensus 75 iIDFs~----------p--------~~~~~~~~~a~~~~~-~~ViGTT 103 (162)
T d1diha1 75 FIDFTR----------P--------EGTLNHLAFCRQHGK-GMVIGTT 103 (162)
T ss_dssp EEECSC----------H--------HHHHHHHHHHHHTTC-EEEECCC
T ss_pred EEEecc----------H--------HHHHHHHHHHHhccc-eeEEecC
Confidence 997642 2 335567888888876 4554444
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=93.73 E-value=0.12 Score=41.23 Aligned_cols=101 Identities=22% Similarity=0.115 Sum_probs=62.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEcc--------------------
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD-------------------- 130 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D-------------------- 130 (413)
-+|+|.|| |-.|.+-++.....|++|.++|.+..+.++ ++++.+ .++..+
T Consensus 30 a~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~----l~~l~~-----~~i~~~~~~~~~~~~~~gyA~~~s~~ 99 (183)
T d1l7da1 30 ARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQ----VESLGG-----KFITVDDEAMKTAETAGGYAKEMGEE 99 (183)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHH----HHHTTC-----EECCC---------------------
T ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHH----HHHhhc-----ceEEEeccccccccccccchhhcCHH
Confidence 47999995 999999999999999999999876554433 333321 111111
Q ss_pred --CCCHHHHHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 131 --LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 131 --l~d~~~~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
....+.+.+.+ .+.|+||-.|-+....... .-++.+++.|+.. .-||=++.
T Consensus 100 ~~~~~~~~l~~~l--~~aDlVI~talipG~~aP~-----------lit~~mv~~Mk~G--SVIVDvai 152 (183)
T d1l7da1 100 FRKKQAEAVLKEL--VKTDIAITTALIPGKPAPV-----------LITEEMVTKMKPG--SVIIDLAV 152 (183)
T ss_dssp --CCHHHHHHHHH--TTCSEEEECCCCTTSCCCC-----------CSCHHHHTTSCTT--CEEEETTG
T ss_pred HHHHHHHHHHHHH--HhhhhheeeeecCCcccce-----------eehHHHHHhcCCC--cEEEEEee
Confidence 11234455556 6899999888765322110 1134455666542 35666665
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.68 E-value=0.1 Score=41.38 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=47.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEc-cCC-CHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYA-DLG-DAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dl~-d~~~~~~~~~~~~~d 147 (413)
.+|+|.|+ |++|...+..+...|. +|+++++... ..+..+++ + -.+++.. +-. ..+.+.+.....++|
T Consensus 30 ~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~----rl~~a~~~---G-Ad~~in~~~~~~~~~~~~~~~~~~G~d 100 (175)
T d1cdoa2 30 STCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPD----KFEKAKVF---G-ATDFVNPNDHSEPISQVLSKMTNGGVD 100 (175)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG----GHHHHHHT---T-CCEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CEEEEEec-CCccchHHHHHHHHhhchheeecchHH----HHHHHHHc---C-CcEEEcCCCcchhHHHHHHhhccCCcc
Confidence 78999985 7788888888888877 6777754332 23333343 1 1223321 211 234555555557899
Q ss_pred EEEEcCcc
Q 015080 148 AVMHFAAV 155 (413)
Q Consensus 148 vvi~~Ag~ 155 (413)
+++.+.|.
T Consensus 101 ~vid~~G~ 108 (175)
T d1cdoa2 101 FSLECVGN 108 (175)
T ss_dssp EEEECSCC
T ss_pred eeeeecCC
Confidence 99999984
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.027 Score=53.72 Aligned_cols=109 Identities=20% Similarity=0.226 Sum_probs=62.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCc-------------------hhhhhhhhhcCCCCceEEEEcc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNI-------------------GAVKVLQELFPEPGRLQFIYAD 130 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~D 130 (413)
.+|+|.|+ |++|.++++.|+..|. +++++|...-... .+.+.+.++.+. -.+..+..+
T Consensus 26 s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~-v~i~~~~~~ 103 (529)
T d1yova1 26 AHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSD-VSGSFVEES 103 (529)
T ss_dssp CEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTT-SBCCEESSC
T ss_pred CCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCC-CcEEEEcCC
Confidence 78999995 8999999999999997 6888864321111 112233333222 233344433
Q ss_pred CCCHHH-HHHHhhcCCCcEEEEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccceecC
Q 015080 131 LGDAKA-VNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYG 201 (413)
Q Consensus 131 l~d~~~-~~~~~~~~~~dvvi~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~~~~ 201 (413)
..+..+ ..+++ .++|+||.+.. |......+-+.|++.++ .+|.++|.+.||
T Consensus 104 ~~~~~~~~~~~~--~~~dvVv~~~~-----------------~~~~~~~l~~~c~~~~i-p~i~~~~~G~~G 155 (529)
T d1yova1 104 PENLLDNDPSFF--CRFTVVVATQL-----------------PESTSLRLADVLWNSQI-PLLICRTYGLVG 155 (529)
T ss_dssp HHHHHHSCGGGG--GGCSEEEEESC-----------------CHHHHHHHHHHHHHHTC-CEEEEEEETTEE
T ss_pred chhhhhhHHHHh--cCCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEeccCCEE
Confidence 221100 01223 46889986542 11223346667777776 588887766655
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=93.37 E-value=0.031 Score=48.01 Aligned_cols=30 Identities=30% Similarity=0.445 Sum_probs=27.9
Q ss_pred EEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
|+|.| +|.+|..+|.+|+++|.+|+++++.
T Consensus 7 vvIIG-aGi~Gls~A~~La~~G~~V~vlE~~ 36 (276)
T d1ryia1 7 AVVIG-GGIIGSAIAYYLAKENKNTALFESG 36 (276)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 99999 5999999999999999999999864
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.25 E-value=0.035 Score=43.37 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=27.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEec
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 102 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r 102 (413)
|+|-|.| .|-+|+.+++.|+++|++|++.++
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~ 31 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLE 31 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCEEEECCT
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCCeEEEEcC
Confidence 3577777 799999999999999999988764
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.23 E-value=0.041 Score=44.48 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=30.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSR 105 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~ 105 (413)
|+|+|.| +|..|...|..|+++|+ +|+++.+...
T Consensus 5 ~kVaIIG-aGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 5 AKIALLG-AGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CEEEEEC-ChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 8999999 59999999999999999 5999987543
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=93.02 E-value=0.063 Score=43.53 Aligned_cols=38 Identities=26% Similarity=0.196 Sum_probs=33.2
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~ 105 (413)
.+.+ +++.|.| .|.||+++++.|...|.+|...++...
T Consensus 41 ~l~~-~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~ 78 (188)
T d2naca1 41 DLEA-MHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRL 78 (188)
T ss_dssp CCTT-CEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred eccc-cceeecc-ccccchhhhhhhhccCceEEEEeeccc
Confidence 4667 8999999 799999999999999999999987543
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=92.84 E-value=0.057 Score=47.67 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=29.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
|+|+|.| +|.-|..+|..|+++|++|.++....
T Consensus 3 KKI~IIG-aG~sGL~aA~~L~k~G~~V~viEk~~ 35 (314)
T d2bi7a1 3 KKILIVG-AGFSGAVIGRQLAEKGHQVHIIDQRD 35 (314)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCCCCEEEEECCC
Confidence 8999999 59999999999999999999997543
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.84 E-value=0.098 Score=43.72 Aligned_cols=35 Identities=37% Similarity=0.545 Sum_probs=31.1
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 68 EGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 68 ~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
.+ |+|+|.| +|..|...|.+|+++|++|+++.+..
T Consensus 48 ~~-k~VvIIG-aGpAGl~aA~~l~~~G~~v~l~E~~~ 82 (233)
T d1djqa3 48 NK-DSVLIVG-AGPSGSEAARVLMESGYTVHLTDTAE 82 (233)
T ss_dssp SC-CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CC-ceEEEEc-ccHHHHHHHHHHHHhccceeeEeecc
Confidence 44 8999999 59999999999999999999997644
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=92.82 E-value=0.053 Score=46.72 Aligned_cols=33 Identities=33% Similarity=0.401 Sum_probs=29.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
|+|+|.| +|.-|...|.+|++.|++|+++.+..
T Consensus 2 KkV~IIG-aG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIG-AGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 7899999 59999999999999999999997543
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=92.66 E-value=0.018 Score=45.99 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=60.8
Q ss_pred eEEEEEcCCChHHHH-HHHHHHHC-----CCEEEEEecCCCCCchhhhhhhhhcCC-CCceEEEEccCCCHHHHHHHhhc
Q 015080 71 THVLVTGGAGYIGSH-AALRLLKD-----SYRVTIVDNLSRGNIGAVKVLQELFPE-PGRLQFIYADLGDAKAVNKFFSE 143 (413)
Q Consensus 71 k~vlITGasG~IG~~-la~~L~~~-----G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~ 143 (413)
.+|.|.||++ +|.. ++..|+.. +.+|+++|.+..+.+...+.++..... +......... | ..+++
T Consensus 4 ~KI~iIGaGs-v~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d---~~eal-- 75 (167)
T d1u8xx1 4 FSIVIAGGGS-TFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATT--D---PEEAF-- 75 (167)
T ss_dssp EEEEEECTTS-SSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEES--C---HHHHH--
T ss_pred ceEEEECCCh-hhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecC--C---hhhcc--
Confidence 5688888744 4543 44444443 248999987655544333333332111 1223332221 2 23445
Q ss_pred CCCcEEEEcCcccCccCCcCChHHHH--------------------HHHHHHHHHHHHHHHHcCCC-EEEEecc
Q 015080 144 NAFDAVMHFAAVAYVGESTLDPLKYY--------------------HNITSNTLVVLESMARHGVD-TLIYSST 196 (413)
Q Consensus 144 ~~~dvvi~~Ag~~~~~~~~~~~~~~~--------------------~~n~~~~~~ll~~~~~~~~~-~iV~~SS 196 (413)
.+.|+||..||+...+. ...+... ..|+.-.+.+++.+++.... .++.+|.
T Consensus 76 ~~AD~Vvitag~~~~~g--~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TN 147 (167)
T d1u8xx1 76 TDVDFVMAHIRVGKYAM--RALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSN 147 (167)
T ss_dssp SSCSEEEECCCTTHHHH--HHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCEEEECCCcCCCCc--eeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 68999999999743211 1111111 13455567788888887654 4555553
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=92.55 E-value=0.076 Score=44.91 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=29.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
++|+|.|| |.-|..+|..|+++|++|+++.+..
T Consensus 5 ~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 5 DRIAVVGG-SISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 68999995 9999999999999999999997643
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=92.41 E-value=0.29 Score=41.09 Aligned_cols=33 Identities=33% Similarity=0.425 Sum_probs=29.9
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEe
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVD 101 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~ 101 (413)
+.+ ++|+|-| .|-+|+++++.|.+.|++|+.++
T Consensus 29 l~g-~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vs 61 (242)
T d1v9la1 29 IEG-KTVAIQG-MGNVGRWTAYWLEKMGAKVIAVS 61 (242)
T ss_dssp CTT-CEEEEEC-CSHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCC-CEEEEEC-CCHHHHHHHHHHHHcCCeEEEee
Confidence 456 9999999 79999999999999999998775
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=92.40 E-value=0.03 Score=43.79 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=27.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC-CEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G-~~V~~~~r~~ 104 (413)
|+|.+.| .|-+|.++++.|++.| ++|.+.+|+.
T Consensus 1 MkI~fIG-~G~MG~ai~~~l~~~~~~~i~v~~r~~ 34 (152)
T d1yqga2 1 MNVYFLG-GGNMAAAVAGGLVKQGGYRIYIANRGA 34 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence 4577888 5999999999998887 8999887643
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.32 E-value=0.14 Score=40.65 Aligned_cols=119 Identities=14% Similarity=0.063 Sum_probs=62.2
Q ss_pred eEEEEEcC-CChHHHHHHHHHHHCC----CEEEEEecCCCCC-chhhhhhh-hhc-CCCCceEEEEccCCCHHHHHHHhh
Q 015080 71 THVLVTGG-AGYIGSHAALRLLKDS----YRVTIVDNLSRGN-IGAVKVLQ-ELF-PEPGRLQFIYADLGDAKAVNKFFS 142 (413)
Q Consensus 71 k~vlITGa-sG~IG~~la~~L~~~G----~~V~~~~r~~~~~-~~~~~~~~-~~~-~~~~~~~~~~~Dl~d~~~~~~~~~ 142 (413)
++|.|.|| +.+.+..++.-+.... .+++++|.+.... .+...... ... ..+..+.+ ..-+|. .+.+
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~--~~~td~---~~al- 75 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEI--HLTLDR---RRAL- 75 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEE--EEESCH---HHHH-
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCcee--eecCCc---hhhc-
Confidence 67888886 4456666666555442 3888887643221 11111111 100 11112222 222343 3344
Q ss_pred cCCCcEEEEcCcccCccCC----------------cCChH--HHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 143 ENAFDAVMHFAAVAYVGES----------------TLDPL--KYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 143 ~~~~dvvi~~Ag~~~~~~~----------------~~~~~--~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
.+.|+||+.|++...+.. ...+. .....|+.-.+.+++.+.+.....++.+-|
T Consensus 76 -~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt 146 (169)
T d1s6ya1 76 -DGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT 146 (169)
T ss_dssp -TTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred -CCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 688999999997532110 00111 123357777888999999887655555544
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=92.19 E-value=0.13 Score=41.69 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=33.0
Q ss_pred CCCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 65 QHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 65 ~~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
..+.+ |++.|.| .|.||+.+++.|...|.+|...++..
T Consensus 43 ~~l~g-~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~ 80 (191)
T d1gdha1 43 EKLDN-KTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHR 80 (191)
T ss_dssp CCCTT-CEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred ceecc-cceEEee-cccchHHHHHHHHhhccccccccccc
Confidence 35667 9999999 69999999999999999999987543
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.71 E-value=0.58 Score=35.47 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=28.7
Q ss_pred eEEEEEcCC---ChHHHHHHHHHHHCCCEEEEEe
Q 015080 71 THVLVTGGA---GYIGSHAALRLLKDSYRVTIVD 101 (413)
Q Consensus 71 k~vlITGas---G~IG~~la~~L~~~G~~V~~~~ 101 (413)
|+|.|.||| +-.|..+++.|.+.|++|+.+.
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVn 53 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVN 53 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEEC
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEEC
Confidence 899999998 7899999999999999998874
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=91.50 E-value=0.25 Score=36.25 Aligned_cols=33 Identities=27% Similarity=0.260 Sum_probs=26.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC---CCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD---SYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~---G~~V~~~~r~~ 104 (413)
++++|.|| |++|.++|..|.+. |.+|+++.+..
T Consensus 21 ~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~ 56 (117)
T d1aoga2 21 RRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE 56 (117)
T ss_dssp SEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred CeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence 78999995 99999999766544 56899987643
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.35 E-value=0.3 Score=39.78 Aligned_cols=76 Identities=12% Similarity=0.141 Sum_probs=45.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCC------chhhhhhhhhcCCCCceEEEE-ccCCCHHHHHHHhhc
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN------IGAVKVLQELFPEPGRLQFIY-ADLGDAKAVNKFFSE 143 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~-~Dl~d~~~~~~~~~~ 143 (413)
|+|+|.| ++..|..+.+.|.+.|++|..+.-.+++. ....+...+ .++.++. -++.+++.+ +.+.+
T Consensus 1 Mkiv~~~-~~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~-----~~i~~~~~~~~~~~~~~-~~i~~ 73 (203)
T d2blna2 1 MKTVVFA-YHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAE-----RGIPVYAPDNVNHPLWV-ERIAQ 73 (203)
T ss_dssp CEEEEEE-CHHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHH-----HTCCEECCSCCCSHHHH-HHHHH
T ss_pred CeEEEEe-cCHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHH-----cCCcceecccccchhhh-hhhhh
Confidence 3456666 57789999999999999987654222211 111222222 2344443 466665544 45556
Q ss_pred CCCcEEEEcC
Q 015080 144 NAFDAVMHFA 153 (413)
Q Consensus 144 ~~~dvvi~~A 153 (413)
.++|++|-..
T Consensus 74 ~~~Dlii~~g 83 (203)
T d2blna2 74 LSPDVIFSFY 83 (203)
T ss_dssp TCCSEEEEES
T ss_pred hcccceeeee
Confidence 7899988654
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.34 E-value=0.086 Score=46.04 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=30.2
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
|..|+|.| +|.-|..+|+.|++.|++|.++....
T Consensus 1 M~dv~IIG-aG~sGl~~A~~L~~~g~~V~iiEk~~ 34 (298)
T d1i8ta1 1 MYDYIIVG-SGLFGAVCANELKKLNKKVLVIEKRN 34 (298)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred CccEEEEC-CcHHHHHHHHHHHhCCCcEEEEECCC
Confidence 67899999 59999999999999999999997543
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=91.24 E-value=0.077 Score=45.51 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=28.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
|+|+|.|| |.-|...|.+|+++|++|+++.+.
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGTDAVLLESS 32 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTCCEEEECSS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCEEEEecC
Confidence 46899995 999999999999999999998653
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.09 E-value=0.096 Score=42.54 Aligned_cols=32 Identities=38% Similarity=0.555 Sum_probs=25.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
|+|.|.| .|++|..+|..| ++|++|+++|.+.
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~ 32 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILP 32 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCH
Confidence 4577777 899999999766 4799999998543
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.19 Score=43.57 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.2
Q ss_pred CCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 78 GAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 78 asG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
.||-.|.+||++|..+|++|+++.+.
T Consensus 44 SSGk~G~alA~~~~~~Ga~V~li~g~ 69 (290)
T d1p9oa_ 44 SSGRRGATSAEAFLAAGYGVLFLYRA 69 (290)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CchHHHHHHHHHHHHcCCEEEEEecC
Confidence 45889999999999999999998754
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.04 E-value=0.071 Score=46.01 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=28.3
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
+|+|.|| |-.|..+|..|.+.|++|+++.+.
T Consensus 4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~ 34 (292)
T d1k0ia1 4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQ 34 (292)
T ss_dssp SEEEECC-SHHHHHHHHHHHHHTCCEEEECSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCC
Confidence 6999995 899999999999999999999754
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.03 E-value=0.19 Score=40.06 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=26.3
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCC-CEEEEEe
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVD 101 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G-~~V~~~~ 101 (413)
|-+|.|-| .|-||+.++|.|.+++ .+|+.+.
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~dievVaIn 32 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVA 32 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEE
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 57899999 7999999999999874 5777764
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=90.98 E-value=0.12 Score=40.75 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=28.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC--EEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~--~V~~~~r~~ 104 (413)
|+|+|.| +|++|.++|..|.+.+. +|+++++..
T Consensus 3 krivIvG-gG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVG-GGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CcEEEEC-ccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 8999999 49999999999999875 788886543
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=90.76 E-value=1.2 Score=34.40 Aligned_cols=72 Identities=14% Similarity=0.088 Sum_probs=38.1
Q ss_pred eEEEEEcCCChHHHHH-HHHHHHC-CCEEEEEe-cCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 71 THVLVTGGAGYIGSHA-ALRLLKD-SYRVTIVD-NLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 71 k~vlITGasG~IG~~l-a~~L~~~-G~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
.++.|.| +|+||..+ .+.|... ..+++.+. |+..+ ...+..++ .++.+. ....+++.+..+..++|
T Consensus 5 irvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~--~~~~~a~~-----~~i~~~---~~~~d~l~~~~~~~~iD 73 (157)
T d1nvmb1 5 LKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAAS--DGLARAQR-----MGVTTT---YAGVEGLIKLPEFADID 73 (157)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTC--HHHHHHHH-----TTCCEE---SSHHHHHHHSGGGGGEE
T ss_pred cEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhc--cchhhhhh-----cCCccc---ccceeeeeecccccccC
Confidence 6899999 89999975 4555444 44676664 32221 11122221 122221 12334444444335799
Q ss_pred EEEEcC
Q 015080 148 AVMHFA 153 (413)
Q Consensus 148 vvi~~A 153 (413)
+||.+.
T Consensus 74 iVf~AT 79 (157)
T d1nvmb1 74 FVFDAT 79 (157)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 999763
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=90.72 E-value=0.099 Score=45.62 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=29.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
|+|+|.| +|.-|...|..|+++|++|+++.+.
T Consensus 31 kkV~IIG-aG~aGLsaA~~L~~~G~~V~vlE~~ 62 (370)
T d2iida1 31 KHVVIVG-AGMAGLSAAYVLAGAGHQVTVLEAS 62 (370)
T ss_dssp CEEEEEC-CBHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CeEEEEC-CCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 8999999 5999999999999999999999754
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.42 E-value=0.69 Score=38.54 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=28.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHH-CCCEEEEEe
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLK-DSYRVTIVD 101 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~-~G~~V~~~~ 101 (413)
+.+ |+|+|-| .|-+|+++++.|.+ .|+.|+.+.
T Consensus 30 l~g-~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vs 63 (239)
T d1gtma1 30 LKG-KTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVS 63 (239)
T ss_dssp STT-CEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCC-CEEEEEC-CCHHHHHHHHHHHHhcCcceeecc
Confidence 457 9999999 69999999999986 499988774
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=90.28 E-value=1.3 Score=33.88 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=24.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
+|-+.| .|-+|..+|+.|++.|+.|+ .+|.
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g~~~~-~~~~ 31 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRFPTLV-WNRT 31 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTSCEEE-ECSS
T ss_pred eEEEEe-HHHHHHHHHHHHHhCCCEEE-EeCC
Confidence 477888 69999999999999998764 4443
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.94 E-value=0.14 Score=42.24 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=28.0
Q ss_pred EEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
|+|.| +|.-|...|..|+++|++|.++.+..
T Consensus 8 viViG-aG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLG-TGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 89999 69999999999999999999997643
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=89.63 E-value=0.79 Score=38.06 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=28.3
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHH-CCCEEEEEe
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLK-DSYRVTIVD 101 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~-~G~~V~~~~ 101 (413)
+.+ ++|.|-| .|-+|+++++.|.+ .|++|+.++
T Consensus 29 l~g-~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vs 62 (234)
T d1b26a1 29 PKK-ATVAVQG-FGNVGQFAALLISQELGSKVVAVS 62 (234)
T ss_dssp TTT-CEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEE
T ss_pred cCC-CEEEEEC-CCHHHHHHHHHHHHhcCCceEEee
Confidence 446 8999998 89999999999975 599998775
|
| >d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Lac-repressor (lacR) core (C-terminal domain) species: Escherichia coli [TaxId: 562]
Probab=88.95 E-value=4.2 Score=33.73 Aligned_cols=111 Identities=12% Similarity=-0.018 Sum_probs=63.3
Q ss_pred ChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEEEcCcccCcc
Q 015080 80 GYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVG 159 (413)
Q Consensus 80 G~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi~~Ag~~~~~ 159 (413)
+-|-..+.+.+.++|++|.+..-.....+...+.++.+...+-+-.++..+..+.+.+...+.+.++=+|+...... ..
T Consensus 16 ~~i~~~i~~~a~~~Gy~v~v~~~~~~~~~~~~~~l~~l~~~~vdgiIl~~~~~~~~~~~~~~~~~~iPvV~~d~~~~-~~ 94 (271)
T d1jyea_ 16 SQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQ-TP 94 (271)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHHHHTTTSCEEESSSCTT-SS
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEeccccCchhHHHHHHHhcCCCeeeeecccc-cc
Confidence 44667788888999999977653222233344445544333223334445555555554545445666666543211 11
Q ss_pred CCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 160 ESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 160 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
. ....-.|..+...+++.+.+.|.+++.++++
T Consensus 95 ~-----~~V~~D~~~~~~~~~~~L~~~G~~~i~~i~~ 126 (271)
T d1jyea_ 95 I-----NSIIFSHEDGTRLGVEHLVALGHQQIALLAG 126 (271)
T ss_dssp S-----CEEEECHHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred C-----Cccccchhhccccceeeeecccccccccccc
Confidence 0 0111235667777888888888889999875
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=88.92 E-value=0.2 Score=39.58 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=27.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
++|+|.| +|++|.++|..|.+.|.+|.++.+.
T Consensus 4 ~~VvIIG-gG~~G~e~A~~l~~~g~~v~v~~~~ 35 (185)
T d1q1ra1 4 DNVVIVG-TGLAGVEVAFGLRASGWEGNIRLVG 35 (185)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCEEEEC-CcHHHHHHHHHHHHcCCceEEEEec
Confidence 7899999 5999999999999999876655443
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=88.50 E-value=0.28 Score=35.93 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=27.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHH---CCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLK---DSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~---~G~~V~~~~r~~ 104 (413)
++++|.| .|++|-++|..|.+ .|.+|+++.+..
T Consensus 19 ~~v~IiG-gG~ig~E~A~~l~~~~~~g~~Vtli~~~~ 54 (117)
T d1feca2 19 KRALCVG-GGYISIEFAGIFNAYKARGGQVDLAYRGD 54 (117)
T ss_dssp SEEEEEC-SSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred CeEEEEC-CChHHHHHHHHhHhhcccccccceecccc
Confidence 7899999 49999999987654 488999998754
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.33 E-value=0.42 Score=33.20 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=26.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIV 100 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~ 100 (413)
|+|||.| +|+=-.+|+..|.+...+|+++
T Consensus 1 MkVLviG-sGgREHAia~~l~~s~~~v~~~ 29 (90)
T d1vkza2 1 VRVHILG-SGGREHAIGWAFAKQGYEVHFY 29 (90)
T ss_dssp CEEEEEE-CSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHhcCCCeEEEe
Confidence 5799999 7999999999999999999886
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=88.30 E-value=0.22 Score=42.45 Aligned_cols=31 Identities=35% Similarity=0.595 Sum_probs=28.0
Q ss_pred EEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
|+|.| +|..|..+|.+|+++|++|+++++..
T Consensus 6 vvIIG-aGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 6 VIVVG-AGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 88999 59999999999999999999998643
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=88.21 E-value=4 Score=31.68 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=24.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCC-CEEEEEe
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVD 101 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G-~~V~~~~ 101 (413)
++|.|-| -|-||+.+++.|.++. .+|+.+.
T Consensus 3 irIaING-fGRIGR~v~Ral~~~~dieiVaIN 33 (172)
T d2czca2 3 VKVGVNG-YGTIGKRVAYAVTKQDDMELIGIT 33 (172)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEE
T ss_pred EEEEEEC-CCHHHHHHHHHHHhCCCceEEEEe
Confidence 7899999 6999999999998764 4776664
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=88.02 E-value=0.76 Score=33.55 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=27.9
Q ss_pred eEEEEEcCC---ChHHHHHHHHHHHCCCEEEEEe
Q 015080 71 THVLVTGGA---GYIGSHAALRLLKDSYRVTIVD 101 (413)
Q Consensus 71 k~vlITGas---G~IG~~la~~L~~~G~~V~~~~ 101 (413)
|+|.|.|+| +-.|..+.+.|.+.|++|+.+.
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVn 35 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVN 35 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEEC
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEc
Confidence 789999998 6799999999999999988873
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=87.62 E-value=0.28 Score=43.19 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=29.6
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCC--CEEEEEecCC
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLS 104 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G--~~V~~~~r~~ 104 (413)
.||+|+|.| +|.-|..+|..|+++| ++|+++.+..
T Consensus 3 ~~KrVaIIG-aG~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 3 TIRKIAIIG-AGPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 468999999 4999999999999876 5999987643
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.48 E-value=1 Score=35.49 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=42.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
.+|.|.| +|.+|+..++.|... +.+|+.++ .++.+.+ +.+.+....+....+ .++++++++..++|+|
T Consensus 2 iki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~--d~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~ll~~~~iD~v 70 (184)
T d1ydwa1 2 IRIGVMG-CADIARKVSRAIHLAPNATISGVA--SRSLEKA-KAFATANNYPESTKI-------HGSYESLLEDPEIDAL 70 (184)
T ss_dssp EEEEEES-CCTTHHHHHHHHHHCTTEEEEEEE--CSSHHHH-HHHHHHTTCCTTCEE-------ESSHHHHHHCTTCCEE
T ss_pred eEEEEEc-CCHHHHHHHHHHHhCCCCEEEEEE--eCCcccc-ccchhccccccceee-------cCcHHHhhhcccccee
Confidence 5788999 589999999999876 66877653 2333322 233222222122222 1235566666789999
Q ss_pred EEc
Q 015080 150 MHF 152 (413)
Q Consensus 150 i~~ 152 (413)
+-+
T Consensus 71 ~I~ 73 (184)
T d1ydwa1 71 YVP 73 (184)
T ss_dssp EEC
T ss_pred eec
Confidence 844
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=87.39 E-value=2.7 Score=32.72 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=25.9
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHCC-CEEEEEe
Q 015080 70 VTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVD 101 (413)
Q Consensus 70 ~k~vlITGasG~IG~~la~~L~~~G-~~V~~~~ 101 (413)
|++|.|-| -|-||+.+.+.|.+++ .+|+.+.
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaIn 32 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVS 32 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEE
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEe
Confidence 78999998 7999999999998876 4666654
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.99 E-value=0.4 Score=41.47 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=28.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
++|+|.| +|.-|...|.+|+++|++|+++...
T Consensus 6 ~kViVIG-aG~aGL~aA~~L~~~G~~V~VlEa~ 37 (449)
T d2dw4a2 6 GKVIIIG-SGVSGLAAARQLQSFGMDVTLLEAR 37 (449)
T ss_dssp CEEEEEC-CBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CcEEEEC-CCHHHHHHHHHHHhCCCCEEEEeCC
Confidence 6799999 5999999999999999999998543
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.88 E-value=0.34 Score=36.62 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=28.0
Q ss_pred eEEEEEcCCChHHHHHHHHHH----HCCCEEEEEecCCC
Q 015080 71 THVLVTGGAGYIGSHAALRLL----KDSYRVTIVDNLSR 105 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~----~~G~~V~~~~r~~~ 105 (413)
++++|.|| |++|.++|..|. +.|.+|+++.+..+
T Consensus 38 k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~ 75 (137)
T d1m6ia2 38 KSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEKG 75 (137)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence 78999995 999999999886 35899999876443
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=86.53 E-value=1.8 Score=34.89 Aligned_cols=81 Identities=15% Similarity=0.068 Sum_probs=48.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhh-----hhhhhcCCCCceEEEEccCCCHHHHHHHhhcCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVK-----VLQELFPEPGRLQFIYADLGDAKAVNKFFSENA 145 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 145 (413)
|+|++.| ++-.+..+.+.|.+.|++|.++.-.+.+.....+ ....... ..++.+...+..+.+...+.++..+
T Consensus 4 mKI~f~G-~~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (206)
T d1fmta2 4 LRIIFAG-TPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAE-EKGLPVFQPVSLRPQENQQLVAELQ 81 (206)
T ss_dssp CEEEEEE-CSHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHH-HTTCCEECCSCSCSHHHHHHHHHTT
T ss_pred cEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhhhh-ccCccccccccccchhhHHHHhhhc
Confidence 6688888 6788999999999999998765422211111000 0000000 1345566666666666677777788
Q ss_pred CcEEEEcC
Q 015080 146 FDAVMHFA 153 (413)
Q Consensus 146 ~dvvi~~A 153 (413)
+|+++-..
T Consensus 82 ~d~~v~~~ 89 (206)
T d1fmta2 82 ADVMVVVA 89 (206)
T ss_dssp CSEEEEES
T ss_pred ceEEEeec
Confidence 99877544
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=86.49 E-value=0.36 Score=38.77 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=26.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC--CCEEEEEecC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNL 103 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~--G~~V~~~~r~ 103 (413)
|+|+|.|| |++|.++|..|.+. +.+|+++.+.
T Consensus 1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~ 34 (198)
T d1nhpa1 1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKG 34 (198)
T ss_dssp CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 46889994 99999999999887 5588888764
|
| >d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.30 E-value=4.3 Score=30.98 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=48.6
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCC---ceEEEEccCCCHHHHH----HHh
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG---RLQFIYADLGDAKAVN----KFF 141 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~Dl~d~~~~~----~~~ 141 (413)
| +++.|.+.+|+.|.-++..+...|-++- .-.+++.+.+++..+... +..-+.++ .+.+.+. .++
T Consensus 3 G-~rvaiit~sGG~~~l~aD~~~~~Gl~l~------~l~~~t~~~L~~~lp~~~~~~NPlD~~~~-~~~~~~~~~l~~~~ 74 (163)
T d2csua3 3 G-NKVAIMTNAGGPGVLTADELDKRGLKLA------TLEEKTIEELRSFLPPMAAVKNPVDMIAS-ARGEDYYRTAKLLL 74 (163)
T ss_dssp S-SEEEEEESCHHHHHHHHHHHHTTTCEEC------CCCHHHHHHHHHHSCTTCEESSEEECCTT-CCHHHHHHHHHHHH
T ss_pred C-CeEEEEECChHHHHHHHHHHHHcCCccC------CCCHHHHHHHHHhCCCcccCCCcccccCC-CCHHHHHHHHHHHH
Confidence 5 6788888899999999999999997763 334566677776655311 11112233 2444444 444
Q ss_pred hcCCCcEEEEcC
Q 015080 142 SENAFDAVMHFA 153 (413)
Q Consensus 142 ~~~~~dvvi~~A 153 (413)
++.++|.|+-..
T Consensus 75 ~d~~vd~v~v~~ 86 (163)
T d2csua3 75 QDPNVDMLIAIC 86 (163)
T ss_dssp HSTTCSEEEEEE
T ss_pred cCCCcCEEEEee
Confidence 457788765443
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=85.75 E-value=0.33 Score=41.82 Aligned_cols=32 Identities=25% Similarity=0.576 Sum_probs=28.0
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS 104 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~ 104 (413)
.|+|.| +|-+|..+|.+|+++|. +|+++++..
T Consensus 3 dViIIG-aGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 589999 59999999999999996 699998753
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.32 E-value=0.87 Score=36.85 Aligned_cols=76 Identities=12% Similarity=-0.011 Sum_probs=44.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCC---CchhhhhhhhhcCCCCceEE------EEccCCCHHHHHHHh
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG---NIGAVKVLQELFPEPGRLQF------IYADLGDAKAVNKFF 141 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~------~~~Dl~d~~~~~~~~ 141 (413)
|+|++.| ++..|..+.+.|.+.|++|+++...+.+ .........+. ++.. ..-+..+++.++. +
T Consensus 1 MkI~~~G-~~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~~~~v~~~a~~~-----~ipv~~~~~~~~~~~~~~~~~~~-l 73 (203)
T d2bw0a2 1 MKIAVIG-QSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKD-----GVPVFKYSRWRAKGQALPDVVAK-Y 73 (203)
T ss_dssp CEEEEEC-CHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHH-----TCCEEECSCCEETTEECHHHHHH-H
T ss_pred CEEEEEc-CCHHHHHHHHHHHHCCCcEEEEEcCCCcCcCCChhhhhHHhc-----CCcccccccccccccccHHHHHH-H
Confidence 4577777 6889999999999999998765422211 11222222221 1222 2234445555444 4
Q ss_pred hcCCCcEEEEcC
Q 015080 142 SENAFDAVMHFA 153 (413)
Q Consensus 142 ~~~~~dvvi~~A 153 (413)
.+.++|++|-..
T Consensus 74 ~~~~~Dliv~~~ 85 (203)
T d2bw0a2 74 QALGAELNVLPF 85 (203)
T ss_dssp HTTCCSEEEESS
T ss_pred HHhCCCceEEee
Confidence 557899988644
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.19 E-value=0.41 Score=39.34 Aligned_cols=36 Identities=31% Similarity=0.331 Sum_probs=30.4
Q ss_pred ceEEEEEcCCChHHH-----HHHHHHHHCCCEEEEEecCCC
Q 015080 70 VTHVLVTGGAGYIGS-----HAALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 70 ~k~vlITGasG~IG~-----~la~~L~~~G~~V~~~~r~~~ 105 (413)
||.|.|+++-||+|. +||..|+++|.+|.++|.+..
T Consensus 1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~ 41 (232)
T d1hyqa_ 1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 41 (232)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 799999999999886 567888999999999986544
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.17 E-value=0.064 Score=44.75 Aligned_cols=27 Identities=37% Similarity=0.436 Sum_probs=23.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVT 98 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~ 98 (413)
|+|+|.| +|-+|..+|.+|+++|++|+
T Consensus 1 mkV~VIG-aGi~GlstA~~L~~~G~~v~ 27 (246)
T d1kifa1 1 MRVVVIG-AGVIGLSTALCIHERYHSVL 27 (246)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHHTTTS
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCCCce
Confidence 4699999 59999999999999998654
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=85.03 E-value=0.41 Score=40.42 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=29.7
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEe
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVD 101 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~ 101 (413)
+.+ ++|.|.| .|-+|+++++.|.+.|++|+.++
T Consensus 34 l~g-~~v~IQG-fGnVG~~~a~~L~e~Gakvvavs 66 (255)
T d1bgva1 34 LVG-KTVALAG-FGNVAWGAAKKLAELGAKAVTLS 66 (255)
T ss_dssp STT-CEEEECC-SSHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCC-CEEEEEC-CCHHHHHHHHHHHHcCCeEEEEe
Confidence 557 8999999 79999999999999999998764
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.41 E-value=0.6 Score=39.16 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=28.7
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~ 104 (413)
.+|+|.|| |.-|..+|..|.+.|. .|+++.+..
T Consensus 2 ~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~ 35 (288)
T d3c96a1 2 IDILIAGA-GIGGLSCALALHQAGIGKVTLLESSS 35 (288)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 57999995 9999999999999995 898987643
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=84.26 E-value=0.98 Score=35.28 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=24.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHC-CCEEEEEe
Q 015080 71 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVD 101 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~-G~~V~~~~ 101 (413)
.+|.|.| +|.+|+..++.|.+. +.+++.+.
T Consensus 4 irvgiiG-~G~ig~~~~~~l~~~~~~elvav~ 34 (170)
T d1f06a1 4 IRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIF 34 (170)
T ss_dssp EEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred ceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEE
Confidence 6789999 699999999999886 66776554
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=84.19 E-value=0.32 Score=43.31 Aligned_cols=100 Identities=15% Similarity=0.126 Sum_probs=58.9
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEEE
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVMH 151 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi~ 151 (413)
.+=.-+|+|.+|..|+ +.+.+|+++.......+.+.+..+ ..+. .++.++.+|+.+.-... ......+|+||-
T Consensus 216 vlDLycG~G~fsl~La----~~~~~V~gvE~~~~ai~~A~~na~-~n~i-~n~~~~~~~~~~~~~~~-~~~~~~~d~vil 288 (358)
T d1uwva2 216 VLDLFCGMGNFTLPLA----TQAASVVGVEGVPALVEKGQQNAR-LNGL-QNVTFYHENLEEDVTKQ-PWAKNGFDKVLL 288 (358)
T ss_dssp EEEESCTTTTTHHHHH----TTSSEEEEEESCHHHHHHHHHHHH-HTTC-CSEEEEECCTTSCCSSS-GGGTTCCSEEEE
T ss_pred EEEecccccccchhcc----ccccEEEeccCcHHHHHHHHHhHH-hccc-ccceeeecchhhhhhhh-hhhhccCceEEe
Confidence 3345578999988775 567899999754433333333322 2222 57899998876532111 111256798873
Q ss_pred cCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Q 015080 152 FAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSST 196 (413)
Q Consensus 152 ~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS 196 (413)
. |+.. |...++..+.+.+.++|||+|.
T Consensus 289 D-----PPR~-------------G~~~~~~~l~~~~~~~ivYVSC 315 (358)
T d1uwva2 289 D-----PARA-------------GAAGVMQQIIKLEPIRIVYVSC 315 (358)
T ss_dssp C-----CCTT-------------CCHHHHHHHHHHCCSEEEEEES
T ss_pred C-----CCCc-------------cHHHHHHHHHHcCCCEEEEEeC
Confidence 2 3321 1122455566667899999997
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=84.11 E-value=0.51 Score=36.65 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=46.8
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCC
Q 015080 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAF 146 (413)
Q Consensus 67 ~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 146 (413)
+.+ |+++|.| =|.+|+-+|+.|...|++|+++..++ -.+.+... ++.+. .. +++++ ...
T Consensus 21 laG-k~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DP---i~alqA~m------dGf~v-----~~---~~~a~--~~a 79 (163)
T d1v8ba1 21 ISG-KIVVICG-YGDVGKGCASSMKGLGARVYITEIDP---ICAIQAVM------EGFNV-----VT---LDEIV--DKG 79 (163)
T ss_dssp CTT-SEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCH---HHHHHHHT------TTCEE-----CC---HHHHT--TTC
T ss_pred ecC-CEEEEec-ccccchhHHHHHHhCCCEEEEEecCc---hhhHHHHh------cCCcc-----Cc---hhHcc--ccC
Confidence 457 9999999 79999999999999999999985432 22222211 23332 22 24555 567
Q ss_pred cEEEEcCccc
Q 015080 147 DAVMHFAAVA 156 (413)
Q Consensus 147 dvvi~~Ag~~ 156 (413)
|++|-+-|-.
T Consensus 80 Di~vTaTGn~ 89 (163)
T d1v8ba1 80 DFFITCTGNV 89 (163)
T ss_dssp SEEEECCSSS
T ss_pred cEEEEcCCCC
Confidence 9999877743
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=84.03 E-value=0.56 Score=36.22 Aligned_cols=31 Identities=32% Similarity=0.509 Sum_probs=25.9
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
+|+|.| +|++|.++|..|.+ +.+|+++++..
T Consensus 2 rVvIIG-gG~~G~e~A~~l~~-~~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVG-NGPGGFELAKQLSQ-TYEVTVIDKEP 32 (167)
T ss_dssp EEEEEC-CSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred eEEEEC-CcHHHHHHHHHHHc-CCCEEEEeccc
Confidence 688999 59999999999964 77999997643
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=83.93 E-value=0.46 Score=39.29 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=27.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCC
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS 104 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~ 104 (413)
+|+|.| +|.-|...|..|.++|. +|+++.+..
T Consensus 2 ~V~IIG-aG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVG-AGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEEC-CBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEEC-CcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 589999 59999999999999996 699987543
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=83.83 E-value=2 Score=31.64 Aligned_cols=94 Identities=7% Similarity=0.031 Sum_probs=56.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHH-CCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
.+|+|.| +|.+|.+|++.+.. .|++++++--..++ ...+.+ .++.++.. +.+.++.+ ..+++.
T Consensus 4 ~~v~I~G-aG~~G~~l~~~l~~~~~~~iv~fiDdd~~--k~G~~I-------~Gi~V~~~-----~~l~~~~~-~~i~ia 67 (126)
T d2dt5a2 4 WGLCIVG-MGRLGSALADYPGFGESFELRGFFDVDPE--KVGRPV-------RGGVIEHV-----DLLPQRVP-GRIEIA 67 (126)
T ss_dssp EEEEEEC-CSHHHHHHHHCSCCCSSEEEEEEEESCTT--TTTCEE-------TTEEEEEG-----GGHHHHST-TTCCEE
T ss_pred ceEEEEc-CCHHHHHHHHhHhhcCCcEEEEEEeCchH--hcCCEE-------CCEEEecH-----HHHHHHHh-hcccEE
Confidence 5899999 59999999998754 37787765322221 111111 34444432 34555554 356666
Q ss_pred EEcCcccCccCCcCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccce
Q 015080 150 MHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCA 198 (413)
Q Consensus 150 i~~Ag~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~iV~~SS~~ 198 (413)
+-+.. . ...+.+++.+.+.+++.+..++...
T Consensus 68 i~~i~----------~--------~~~~~I~d~l~~~gIk~I~~f~~~~ 98 (126)
T d2dt5a2 68 LLTVP----------R--------EAAQKAADLLVAAGIKGILNFAPVV 98 (126)
T ss_dssp EECSC----------H--------HHHHHHHHHHHHHTCCEEEECSSSC
T ss_pred EEeCC----------H--------HHHHHHHHHHHHcCCCEEeecCcee
Confidence 64432 1 1234577888888998888877644
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.36 E-value=0.61 Score=37.48 Aligned_cols=82 Identities=17% Similarity=0.073 Sum_probs=56.1
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
..+=+|-|+|+.-.++.+.+ . +.+|+++|++....+.+.+.++.. +.++.++.++..+...+..-.....+|.|+
T Consensus 26 ~~lD~t~G~Gghs~~il~~~-~-~~~vi~~D~d~~~l~~a~~~l~~~---~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl 100 (192)
T d1m6ya2 26 IILDCTVGEGGHSRAILEHC-P-GCRIIGIDVDSEVLRIAEEKLKEF---SDRVSLFKVSYREADFLLKTLGIEKVDGIL 100 (192)
T ss_dssp EEEETTCTTSHHHHHHHHHC-T-TCEEEEEESCHHHHHHHHHHTGGG---TTTEEEEECCGGGHHHHHHHTTCSCEEEEE
T ss_pred EEEEecCCCcHHHHHHHhcC-C-CCeEEEeechHHHHHHHHHhhccc---cccccchhHHHhhHHHHHHHcCCCCcceee
Confidence 34445667777777777765 3 468999997655444444444332 467999999988877665554446899999
Q ss_pred EcCcccC
Q 015080 151 HFAAVAY 157 (413)
Q Consensus 151 ~~Ag~~~ 157 (413)
.-.|++.
T Consensus 101 ~DlGvSs 107 (192)
T d1m6ya2 101 MDLGVST 107 (192)
T ss_dssp EECSCCH
T ss_pred eccchhH
Confidence 8888754
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.30 E-value=0.55 Score=40.82 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=27.8
Q ss_pred EEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
|+|.| +|.-|...|..|+++|++|+++.+..
T Consensus 2 ViVIG-aG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVG-GGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEEC-CBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEEC-CCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 78999 59999999999999999999997643
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=83.11 E-value=0.71 Score=39.87 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=28.9
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
-.|+|.|| |.-|..+|++|.+.|.+|+++.+.
T Consensus 8 ~dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~ 39 (298)
T d1w4xa1 8 VDVLVVGA-GFSGLYALYRLRELGRSVHVIETA 39 (298)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCEEEECc-cHHHHHHHHHHHhCCCCEEEEEcC
Confidence 57999995 999999999999999999998754
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=82.87 E-value=0.27 Score=38.97 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=25.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEe
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVD 101 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~ 101 (413)
.+|+|.| +|++|.++|..|.+.|.+|.++.
T Consensus 4 a~VvIIG-gG~~G~e~A~~l~~~g~~v~i~~ 33 (183)
T d1d7ya1 4 APVVVLG-AGLASVSFVAELRQAGYQGLITV 33 (183)
T ss_dssp SSEEEEC-CSHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCEEEEC-ccHHHHHHHHHHHhcCCceEEEE
Confidence 5699999 59999999999999998655443
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=82.05 E-value=0.53 Score=33.76 Aligned_cols=37 Identities=19% Similarity=0.079 Sum_probs=30.7
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 66 HEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 66 ~~~~~k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
...+ |+|+|.| +|--|..+|..|+..+.+|+.+.|..
T Consensus 29 ~f~g-K~VlVVG-~g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 29 LFVG-ESVLVVG-GASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp GGTT-CCEEEEC-SSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred hcCC-CeEEEEC-CCCCHHHHHHHHHHhcCEEEEEEecC
Confidence 4557 9999999 58999999999999988877776543
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=81.79 E-value=0.56 Score=39.65 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=29.3
Q ss_pred ceEEEEEcCCChHHHH-----HHHHHHHCCCEEEEEecCCC
Q 015080 70 VTHVLVTGGAGYIGSH-----AALRLLKDSYRVTIVDNLSR 105 (413)
Q Consensus 70 ~k~vlITGasG~IG~~-----la~~L~~~G~~V~~~~r~~~ 105 (413)
||+|.|+| =||+|.. |+..|++.|++|.++|.+..
T Consensus 1 mr~Iai~g-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~q 40 (269)
T d1cp2a_ 1 MRQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp CEEEEEEE-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred CCEEEEEC-CCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 78999998 8888864 56689999999999997654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=81.23 E-value=1.2 Score=36.34 Aligned_cols=78 Identities=18% Similarity=0.120 Sum_probs=47.2
Q ss_pred eEEEEEcC-CChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGG-AGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGa-sG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
.+||-.|+ ||++...+++. ...+.+|++++......+.+.+.++.... .++.++.+|..+.. .....+|+|
T Consensus 77 ~~VLdiG~GtG~~s~~la~~-~~~~g~V~~id~~~~~~~~a~~~~~~~~~--~n~~~~~~d~~~~~-----~~~~~fD~I 148 (213)
T d1dl5a1 77 MRVLEIGGGTGYNAAVMSRV-VGEKGLVVSVEYSRKICEIAKRNVERLGI--ENVIFVCGDGYYGV-----PEFSPYDVI 148 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHH-HCTTCEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEESCGGGCC-----GGGCCEEEE
T ss_pred ceEEEecCccchhHHHHHHH-hCCCCcEEEeecchhhHHHhhhhHhhhcc--cccccccCchHHcc-----ccccchhhh
Confidence 68888876 44544444444 44456899998755544444444443322 46778888865421 222568999
Q ss_pred EEcCccc
Q 015080 150 MHFAAVA 156 (413)
Q Consensus 150 i~~Ag~~ 156 (413)
+.+++..
T Consensus 149 ~~~~~~~ 155 (213)
T d1dl5a1 149 FVTVGVD 155 (213)
T ss_dssp EECSBBS
T ss_pred hhhccHH
Confidence 9887754
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=81.21 E-value=0.68 Score=40.95 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=28.1
Q ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEecC
Q 015080 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 103 (413)
Q Consensus 72 ~vlITGasG~IG~~la~~L~~~G~~V~~~~r~ 103 (413)
-|+|.| +|+-|..+|.+|++.|++|.++.+-
T Consensus 4 ~VIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 4 PAVVIG-TGYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEeC-cCHHHHHHHHHHHHCcCeEEEEecC
Confidence 388999 7999999999999999999999763
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=81.10 E-value=0.81 Score=38.40 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=50.5
Q ss_pred eEEEEEcC-CChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEE
Q 015080 71 THVLVTGG-AGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAV 149 (413)
Q Consensus 71 k~vlITGa-sG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvv 149 (413)
++||=.|+ ||.+..++++.+... .+|+.++++....+.+.+.+.+... ..++.+..+|+.+. +.+..+|.|
T Consensus 87 ~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~-~~nv~~~~~Di~~~------~~~~~fD~V 158 (250)
T d1yb2a1 87 MDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYD-IGNVRTSRSDIADF------ISDQMYDAV 158 (250)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSC-CTTEEEECSCTTTC------CCSCCEEEE
T ss_pred CEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcC-CCceEEEEeeeecc------cccceeeee
Confidence 78888886 677777888776554 4899988655444445555544333 36899999998763 333578988
Q ss_pred EEc
Q 015080 150 MHF 152 (413)
Q Consensus 150 i~~ 152 (413)
+..
T Consensus 159 ~ld 161 (250)
T d1yb2a1 159 IAD 161 (250)
T ss_dssp EEC
T ss_pred eec
Confidence 854
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=81.01 E-value=0.75 Score=41.31 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=19.2
Q ss_pred CChHH---HHHHHHHHHCCCEEEEEe
Q 015080 79 AGYIG---SHAALRLLKDSYRVTIVD 101 (413)
Q Consensus 79 sG~IG---~~la~~L~~~G~~V~~~~ 101 (413)
+||+| .+|++.|+++||+|+++.
T Consensus 15 ~GG~~~~~~~La~~L~~~Gh~V~Vvt 40 (437)
T d2bisa1 15 VGGLAEALTAISEALASLGHEVLVFT 40 (437)
T ss_dssp SSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence 46776 677999999999998886
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.96 E-value=1.1 Score=34.28 Aligned_cols=32 Identities=31% Similarity=0.256 Sum_probs=27.2
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCE-EEEEecC
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNL 103 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~-V~~~~r~ 103 (413)
++|+|.| .|..|...|..+.+.|++ |+++.|.
T Consensus 46 ~kVvVIG-GGdtA~D~A~~a~r~GA~~V~vi~rr 78 (153)
T d1gtea3 46 GAVIVLG-AGDTAFDCATSALRCGARRVFLVFRK 78 (153)
T ss_dssp SEEEEEC-SSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CEEEEEC-CChhHHHHHHHHHHcCCcceeEEEeC
Confidence 6799998 599999999999999985 7777664
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.90 E-value=1.7 Score=37.51 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=45.8
Q ss_pred CceEEEEEcCCChHHHHHHHHHHHCCC-EEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCc
Q 015080 69 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFD 147 (413)
Q Consensus 69 ~~k~vlITGasG~IG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 147 (413)
+ ++||-.|+..|+ ++..+++.|+ +|++++.+.. ...+.+...+. .....+.++.+|+.+.. .....+|
T Consensus 36 ~-~~VLDiGcG~G~---lsl~aa~~Ga~~V~aid~s~~-~~~a~~~~~~~-~~~~~i~~~~~~~~~l~-----~~~~~~D 104 (311)
T d2fyta1 36 D-KVVLDVGCGTGI---LSMFAAKAGAKKVLGVDQSEI-LYQAMDIIRLN-KLEDTITLIKGKIEEVH-----LPVEKVD 104 (311)
T ss_dssp T-CEEEEETCTTSH---HHHHHHHTTCSEEEEEESSTH-HHHHHHHHHHT-TCTTTEEEEESCTTTSC-----CSCSCEE
T ss_pred c-CEEEEECCCCCH---HHHHHHHcCCCEEEEEeCHHH-HHHHHHHHHHh-CCCccceEEEeeHHHhc-----Cccccce
Confidence 5 899999865443 4556677886 7999885432 22222332222 33468999999987753 1225789
Q ss_pred EEEEc
Q 015080 148 AVMHF 152 (413)
Q Consensus 148 vvi~~ 152 (413)
+|+..
T Consensus 105 ~Ivse 109 (311)
T d2fyta1 105 VIISE 109 (311)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99864
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=80.84 E-value=0.99 Score=35.03 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=42.0
Q ss_pred eEEEEEcCCChHHHHHHHH-HHHC-----CCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcC
Q 015080 71 THVLVTGGAGYIGSHAALR-LLKD-----SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSEN 144 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~-L~~~-----G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 144 (413)
|||.|.|| |.+|..++-. |++. +.+++++|.+..+.+...+........ ...... . ++. .+.+ .
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~--~~~~~~-t-~~~---~~~l--~ 70 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKD--RFKVLI-S-DTF---EGAV--V 70 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTT--SSEEEE-C-SSH---HHHH--T
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhcc--CceEEE-e-cCc---cccc--C
Confidence 46888897 4466665533 2221 458999987655444333333333222 222222 1 222 2344 6
Q ss_pred CCcEEEEcCccc
Q 015080 145 AFDAVMHFAAVA 156 (413)
Q Consensus 145 ~~dvvi~~Ag~~ 156 (413)
+.|+||..||..
T Consensus 71 ~aDvVVita~~~ 82 (162)
T d1up7a1 71 DAKYVIFQFRPG 82 (162)
T ss_dssp TCSEEEECCCTT
T ss_pred CCCEEEEecccC
Confidence 889999999864
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=80.81 E-value=0.55 Score=37.98 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=26.3
Q ss_pred eEEEEEcCCChHHH-----HHHHHHHHCCCEEEEEe
Q 015080 71 THVLVTGGAGYIGS-----HAALRLLKDSYRVTIVD 101 (413)
Q Consensus 71 k~vlITGasG~IG~-----~la~~L~~~G~~V~~~~ 101 (413)
|+++|||-..++|. .|++.|+++|++|.+++
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id 37 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence 89999995558886 57789999999999885
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=80.57 E-value=0.81 Score=37.83 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=28.0
Q ss_pred EEEEcCCChHHHHHHHHHHHCCCEEEEEecCC
Q 015080 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 73 vlITGasG~IG~~la~~L~~~G~~V~~~~r~~ 104 (413)
|+|.| +|-.|..+|..|+++|++|+++++..
T Consensus 5 ViIIG-aG~aGl~aA~~la~~G~~V~liEk~~ 35 (251)
T d2i0za1 5 VIVIG-GGPSGLMAAIGAAEEGANVLLLDKGN 35 (251)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 88999 49999999999999999999997644
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=80.18 E-value=0.98 Score=36.90 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=28.9
Q ss_pred eEEEEEcCCChHHH-----HHHHHHHHCCCEEEEEecCC
Q 015080 71 THVLVTGGAGYIGS-----HAALRLLKDSYRVTIVDNLS 104 (413)
Q Consensus 71 k~vlITGasG~IG~-----~la~~L~~~G~~V~~~~r~~ 104 (413)
|.|.|+|+-||+|. +||..|++.|.+|.++|-+.
T Consensus 3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~ 41 (237)
T d1g3qa_ 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 78999999999886 56788889999999998653
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=80.04 E-value=0.44 Score=39.73 Aligned_cols=72 Identities=11% Similarity=0.009 Sum_probs=47.5
Q ss_pred eEEEEEcCCChHHHHHHHHHHHCCCEEEEEecCCCCCchhhhhhhhhcCCCCceEEEEccCCCHHHHHHHhhcCCCcEEE
Q 015080 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKFFSENAFDAVM 150 (413)
Q Consensus 71 k~vlITGasG~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~dvvi 150 (413)
++||=.|+..| .++..|+++|.+|+++|.+..-.+.+.+.+.. .+.++.++.+|+.+.+ + ...+|+|+
T Consensus 39 ~~vLDiGCG~G---~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~---~~~~v~~~~~d~~~~~-----~-~~~fD~i~ 106 (246)
T d1y8ca_ 39 DDYLDLACGTG---NLTENLCPKFKNTWAVDLSQEMLSEAENKFRS---QGLKPRLACQDISNLN-----I-NRKFDLIT 106 (246)
T ss_dssp TEEEEETCTTS---TTHHHHGGGSSEEEEECSCHHHHHHHHHHHHH---TTCCCEEECCCGGGCC-----C-SCCEEEEE
T ss_pred CeEEEEeCcCC---HHHHHHHHhCCccEeeccchhhhhhccccccc---cCccceeeccchhhhc-----c-cccccccc
Confidence 68999997554 36778888999999998543322223333322 2357899999987653 1 25789998
Q ss_pred EcCc
Q 015080 151 HFAA 154 (413)
Q Consensus 151 ~~Ag 154 (413)
...+
T Consensus 107 ~~~~ 110 (246)
T d1y8ca_ 107 CCLD 110 (246)
T ss_dssp ECTT
T ss_pred eeee
Confidence 6544
|