Citrus Sinensis ID: 015125
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 413 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LFG1 | 413 | Probable alpha-amylase 2 | yes | no | 1.0 | 1.0 | 0.820 | 0.0 | |
| Q94A41 | 887 | Alpha-amylase 3, chloropl | no | no | 0.934 | 0.435 | 0.491 | 1e-113 | |
| P17859 | 421 | Alpha-amylase OS=Vigna mu | N/A | no | 0.924 | 0.907 | 0.463 | 1e-102 | |
| P04063 | 427 | Alpha-amylase type B isoz | N/A | no | 0.929 | 0.899 | 0.475 | 1e-101 | |
| A2YGY2 | 446 | Alpha-amylase isozyme 2A | N/A | no | 0.937 | 0.867 | 0.473 | 1e-100 | |
| Q0D9J1 | 445 | Alpha-amylase isozyme 2A | no | no | 0.937 | 0.869 | 0.473 | 1e-100 | |
| P00693 | 438 | Alpha-amylase type A isoz | N/A | no | 0.929 | 0.876 | 0.464 | 1e-99 | |
| P27934 | 437 | Alpha-amylase isozyme 3E | no | no | 0.929 | 0.878 | 0.452 | 9e-99 | |
| P04750 | 429 | Alpha-amylase type B isoz | N/A | no | 0.929 | 0.895 | 0.468 | 6e-98 | |
| P27932 | 440 | Alpha-amylase isozyme 3A | no | no | 0.929 | 0.872 | 0.440 | 2e-97 |
| >sp|Q8LFG1|AMY2_ARATH Probable alpha-amylase 2 OS=Arabidopsis thaliana GN=AMY2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/413 (82%), Positives = 382/413 (92%)
Query: 1 MDYTSKGFDETNQQTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSV 60
M Y + FDE N QTD+G VIR+GRE++ Q +NWES K+DWWRNL+ KVPDI+KSGFTS
Sbjct: 1 MGYYNNVFDECNDQTDIGRVIRDGREVILQAYNWESHKYDWWRNLDGKVPDIAKSGFTSA 60
Query: 61 WLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ 120
WLPP + S APEGYLPQ+LYSLNS+YGSEHLLK+LL KMKQ+KVRAMADIVINHRVGTT+
Sbjct: 61 WLPPPSQSLAPEGYLPQDLYSLNSAYGSEHLLKSLLRKMKQYKVRAMADIVINHRVGTTR 120
Query: 121 GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRW 180
GHGG YNRYDGI L WDEHAVTSCTGGLGN STGDNF+GVPN+DHTQHFVRKDII WLRW
Sbjct: 121 GHGGMYNRYDGISLPWDEHAVTSCTGGLGNRSTGDNFNGVPNVDHTQHFVRKDIIGWLRW 180
Query: 181 LRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQR 240
LRNTVGFQDFRFDFARGYSA YVKEYI A+P+FSVGE WDSCNYN HGLDYNQDSHRQR
Sbjct: 181 LRNTVGFQDFRFDFARGYSANYVKEYIGAAKPLFSVGECWDSCNYNGHGLDYNQDSHRQR 240
Query: 241 IINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHD 300
II+WID TGQ+SAAFDFTTKGILQEAVKGQ+WRL DAQGKPPGVMGWWPSRAVTFLDNHD
Sbjct: 241 IISWIDATGQISAAFDFTTKGILQEAVKGQYWRLCDAQGKPPGVMGWWPSRAVTFLDNHD 300
Query: 301 TGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIH 360
TGSTQAHWPFPS+H+MEGYAYIL HPGIP VFYDHFYDWG SIH+QIVKL+D+RR+QDIH
Sbjct: 301 TGSTQAHWPFPSHHVMEGYAYILTHPGIPCVFYDHFYDWGSSIHDQIVKLIDIRRRQDIH 360
Query: 361 SRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 413
SRS++++L+A+SNLY+AI+G+K+CMK+GDGSWCP+G++WTLATSGH+YAVWHK
Sbjct: 361 SRSTVRVLKAESNLYAAIVGEKICMKLGDGSWCPSGRDWTLATSGHRYAVWHK 413
|
Probable alpha-amylase that does not seem to be required for breakdown of transitory starch in leaves. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1 |
| >sp|Q94A41|AMY3_ARATH Alpha-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=AMY3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/397 (49%), Positives = 268/397 (67%), Gaps = 11/397 (2%)
Query: 23 NGREILFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYS 81
+G EIL QGFNWES K W+ L+ K +++ GFT +WLPP T S +PEGY+P++LY+
Sbjct: 493 SGFEILCQGFNWESNKSGRWYLELQEKADELASLGFTVLWLPPPTESVSPEGYMPKDLYN 552
Query: 82 LNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAV 141
LNS YG+ LK + K + ++ + D V+NHR + G +N + G L+WD+ AV
Sbjct: 553 LNSRYGTIDELKDTVKKFHKVGIKVLGDAVLNHRCAHFKNQNGVWNLFGG-RLNWDDRAV 611
Query: 142 TSCTG---GLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 198
+ G GN S+GDNFH PNIDH+Q FVRKDI WL W+ VG+ +R DF RG+
Sbjct: 612 VADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWMMEEVGYDGWRLDFVRGF 671
Query: 199 SAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFT 258
YVK+Y++ ++P F+VGEYWDS +Y +DYNQD+HRQRI++WI+ T + AFD T
Sbjct: 672 WGGYVKDYMDASKPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINATSGAAGAFDVT 731
Query: 259 TKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIME 317
TKGIL A+ K ++WRL D +GKPPGV+GWWPSRAVTF++NHDTGSTQ HW FP M+
Sbjct: 732 TKGILHTALQKCEYWRLSDPKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEGKEMQ 791
Query: 318 GYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSA 377
GYAYIL HPG P+VF+DH + H++I L+ +R +Q +H RS + I +++ ++Y+A
Sbjct: 792 GYAYILTHPGTPAVFFDHIF---SDYHSEIAALLSLRNRQKLHCRSEVNIDKSERDVYAA 848
Query: 378 IIGDKVCMKIGDGSWCP--AGKEWTLATSGHKYAVWH 412
II +KV MKIG G + P + W++A G Y VW
Sbjct: 849 IIDEKVAMKIGPGHYEPPNGSQNWSVAVEGRDYKVWE 885
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Possesses endoamylolytic activity in vitro, but seems not required for breakdown of transitory starch in leaves. May be involved in the determination of the final structure of glucans by shortening long linear phospho-oligosaccharides in the chloroplast stroma. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P17859|AMYA_VIGMU Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/401 (46%), Positives = 262/401 (65%), Gaps = 19/401 (4%)
Query: 27 ILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS 85
+LFQGFNWES K W+ +L+ +PD++ +G T VWLPP + S +PEGYLP LY L++S
Sbjct: 25 LLFQGFNWESSKKGGWYNSLKNSIPDLANAGITHVWLPPPSQSVSPEGYLPGRLYDLDAS 84
Query: 86 -YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG-IPLS---WDEHA 140
YGS++ LK+L+ + ++ +ADIVINHR + G Y ++G P S W
Sbjct: 85 KYGSKNELKSLIAAFHEKGIKCLADIVINHRTAERKDGRGIYCIFEGGTPDSRQDWGPSF 144
Query: 141 V----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196
+ T+ + G GN +G+ + P+IDH V++++ W+ WL+ +GF +RFDF +
Sbjct: 145 ICRDDTAYSDGTGNNDSGEGYDAAPDIDHLNPQVQRELSEWMNWLKTEIGFDGWRFDFVK 204
Query: 197 GYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWIDGTGQLSAAF 255
GY+ K Y+E +P F+VGE WDS +Y G +YNQDSHR ++NW++ G AF
Sbjct: 205 GYAPSISKIYMEQTKPDFAVGEKWDSISYGQDGKPNYNQDSHRGALVNWVESAGGAITAF 264
Query: 256 DFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHI 315
DFTTKGILQ AV+G+ WRL D GKPPG++G P AVTF+DNHDTGSTQ WPFPS+ +
Sbjct: 265 DFTTKGILQAAVQGELWRLIDPNGKPPGMIGVKPENAVTFIDNHDTGSTQRLWPFPSDKV 324
Query: 316 MEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLY 375
M+GYAYIL HPG PS+FYDHF+DWG + QI KL +R + I+ +S++KI+ ++ +LY
Sbjct: 325 MQGYAYILTHPGTPSIFYDHFFDWG--LKEQIAKLSSIRLRNGINEKSTVKIMASEGDLY 382
Query: 376 SAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAVWH 412
A I +K+ +KIG G+ P+ +ATSG YAVW
Sbjct: 383 VAKIDNKIMVKIGPKMDLGNLIPSNLH--VATSGQDYAVWE 421
|
Vigna mungo (taxid: 3915) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P04063|AMY2_HORVU Alpha-amylase type B isozyme OS=Hordeum vulgare GN=AMY1.2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/406 (47%), Positives = 261/406 (64%), Gaps = 22/406 (5%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES KH+ W+ L KV DI+ +G T VWLPPA+ S A +GY+P LY L+
Sbjct: 25 QVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGITHVWLPPASQSVAEQGYMPGRLYDLD 84
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG----IPLSWDE 138
+S YG++ LK+L+ + V+A+ADIVINHR + G Y ++G L W
Sbjct: 85 ASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGGTPDARLDWGP 144
Query: 139 HAVT----SCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
H + G GN TG +F P+IDH V+K+++ WL WL+ +GF +RFDF
Sbjct: 145 HMICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGFDGWRFDF 204
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWIDGTGQLSA 253
A+GYSA K YI+ + P F+V E W S Y G + NQD HRQ ++NW+D G
Sbjct: 205 AKGYSADVAKIYIDRSEPSFAVAEIWTSLAYGGDGKPNLNQDQHRQELVNWVDKVGGKGP 264
Query: 254 A--FDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFP 311
A FDFTTKGIL AV+G+ WRLR GK PG++GWWP++AVTF+DNHDTGSTQ WPFP
Sbjct: 265 ATTFDFTTKGILNVAVEGELWRLRGTDGKAPGMIGWWPAKAVTFVDNHDTGSTQHMWPFP 324
Query: 312 SNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQ 371
S+ +M+GYAYIL HPG P +FYDHF+DWG + +I +L+ VR + IH+ S ++I+EA
Sbjct: 325 SDRVMQGYAYILTHPGTPCIFYDHFFDWG--LKEEIDRLVSVRTRHGIHNESKLQIIEAD 382
Query: 372 SNLYSAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAVWHK 413
++LY A I KV +K+G G+ P G + +A G+ YAVW K
Sbjct: 383 ADLYLAEIDGKVIVKLGPRYDVGNLIPGG--FKVAAHGNDYAVWEK 426
|
Hordeum vulgare (taxid: 4513) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A2YGY2|AMY2A_ORYSI Alpha-amylase isozyme 2A OS=Oryza sativa subsp. indica GN=AMYC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/412 (47%), Positives = 261/412 (63%), Gaps = 25/412 (6%)
Query: 23 NGREILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLY 80
+G +ILFQGFNWES + W+ L KV DI +G T VWLPP +HS + +GY+P LY
Sbjct: 20 SGDKILFQGFNWESWRQSGGWYNLLMGKVDDIVAAGVTHVWLPPPSHSVSTQGYMPGRLY 79
Query: 81 SLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG-IP---LS 135
L++S YG+ LK+L+ + ++A+AD+VINHR + G Y ++G P L
Sbjct: 80 DLDASRYGTSMELKSLISALHGKGIQAIADVVINHRCADYKDSRGIYCIFEGGTPDGRLD 139
Query: 136 WDEHAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLR-NTVGFQDF 190
W H + T + G GN TG +F P+IDH V++++ WL WL+ + VGF +
Sbjct: 140 WGPHMICRDDTQFSDGTGNLDTGADFAAAPDIDHLNGVVQRELTDWLLWLKSDEVGFDAW 199
Query: 191 RFDFARGYSAKYVKEYIEGARPI-FSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWID-- 246
R DFARGYS + K YIEG P+ +V E WDS Y G +YNQD+HRQ +++W+D
Sbjct: 200 RLDFARGYSPEVAKVYIEGTTPVGLAVAELWDSMAYGGDGKPEYNQDAHRQALVDWVDRV 259
Query: 247 -GTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQ 305
GT FDFTTKGI+ AV+G+ WRL D QGK PGV+GWWP++AVTF+DNHDTGSTQ
Sbjct: 260 GGTASAGMVFDFTTKGIMNTAVEGELWRLIDQQGKAPGVIGWWPAKAVTFVDNHDTGSTQ 319
Query: 306 AHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSI 365
WPFPS+ +M+GYAYIL HPG P +FYDHF+DWG + QI L+ VR++ + + SS+
Sbjct: 320 QMWPFPSDKVMQGYAYILTHPGNPCIFYDHFFDWG--LKEQIAALVAVRQRNGVTATSSL 377
Query: 366 KILEAQSNLYSAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAVWHK 413
KI+ ++ Y A I KV MKIG S P G + LA G+ YAVW K
Sbjct: 378 KIMLHDADAYVAEIDGKVVMKIGSRYDVSSLIPPG--FHLAAHGNGYAVWEK 427
|
Important for breakdown of endosperm starch during germination. Oryza sativa subsp. indica (taxid: 39946) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q0D9J1|AMY2A_ORYSJ Alpha-amylase isozyme 2A OS=Oryza sativa subsp. japonica GN=AMY2A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/412 (47%), Positives = 261/412 (63%), Gaps = 25/412 (6%)
Query: 23 NGREILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLY 80
+G +ILFQGFNWES + W+ L KV DI +G T VWLPP +HS + +GY+P LY
Sbjct: 20 SGDKILFQGFNWESWRQSGGWYNLLMGKVDDIVAAGVTHVWLPPPSHSVSTQGYMPGRLY 79
Query: 81 SLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG-IP---LS 135
L++S YG+ LK+L+ + ++A+AD+VINHR + G Y ++G P L
Sbjct: 80 DLDASRYGTSMELKSLISALHGKGIQAIADVVINHRCADYKDSRGIYCIFEGGTPDGRLD 139
Query: 136 WDEHAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLR-NTVGFQDF 190
W H + T + G GN TG +F P+IDH V++++ WL WL+ + VGF +
Sbjct: 140 WGPHMICRDDTQFSDGTGNLDTGADFAAAPDIDHLNGVVQRELTDWLLWLKSDEVGFDAW 199
Query: 191 RFDFARGYSAKYVKEYIEGARPI-FSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWID-- 246
R DFARGYS + K YIEG P+ +V E WDS Y G +YNQD+HRQ +++W+D
Sbjct: 200 RLDFARGYSPEVAKVYIEGTTPVGLAVAELWDSMAYGGDGKPEYNQDAHRQALVDWVDRV 259
Query: 247 -GTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQ 305
GT FDFTTKGI+ AV+G+ WRL D QGK PGV+GWWP++AVTF+DNHDTGSTQ
Sbjct: 260 GGTASAGMVFDFTTKGIMNTAVEGELWRLIDQQGKAPGVIGWWPAKAVTFVDNHDTGSTQ 319
Query: 306 AHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSI 365
WPFPS+ +M+GYAYIL HPG P +FYDHF+DWG + QI L+ VR++ + + SS+
Sbjct: 320 QMWPFPSDKVMQGYAYILTHPGNPCIFYDHFFDWG--LKEQIAALVAVRQRNGVTATSSL 377
Query: 366 KILEAQSNLYSAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAVWHK 413
KI+ ++ Y A I KV MKIG S P G + LA G+ YAVW K
Sbjct: 378 KIMLHDADAYVAEIDGKVVMKIGSRYDVSSLIPPG--FHLAAHGNGYAVWEK 427
|
Important for breakdown of endosperm starch during germination. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P00693|AMY1_HORVU Alpha-amylase type A isozyme OS=Hordeum vulgare GN=AMY1.1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 363 bits (933), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 189/407 (46%), Positives = 260/407 (63%), Gaps = 23/407 (5%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES K W+ + KV DI+ +G T VWLPP +HS + EGY+P LY ++
Sbjct: 26 QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDID 85
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP----LSWDE 138
+S YG+ LK+L+ + V+A+ADIVINHR + G Y ++G L W
Sbjct: 86 ASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGP 145
Query: 139 HAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
H + T + G N TG +F P+IDH V++++ WL WL++ +GF +R DF
Sbjct: 146 HMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDF 205
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWIDGTGQLSA 253
ARGYS + K YI+G P +V E WD+ G +Y+QD+HRQ ++NW+D G ++
Sbjct: 206 ARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAAS 265
Query: 254 A---FDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPF 310
A FDFTTKGIL AV+G+ WRL D QGK PGVMGWWP++A TF+DNHDTGSTQA WPF
Sbjct: 266 AGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAATFVDNHDTGSTQAMWPF 325
Query: 311 PSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEA 370
PS+ +M+GYAYIL HPGIP +FYDHF++WG +QI L+ +R++ I + S++KIL
Sbjct: 326 PSDKVMQGYAYILTHPGIPCIFYDHFFNWG--FKDQIAALVAIRKRNGITATSALKILMH 383
Query: 371 QSNLYSAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAVWHK 413
+ + Y A I KV +KIG G+ PAG + + G+ YAVW K
Sbjct: 384 EGDAYVAEIDGKVVVKIGSRYDVGAVIPAG--FVTSAHGNDYAVWEK 428
|
Hordeum vulgare (taxid: 4513) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P27934|AMY3E_ORYSJ Alpha-amylase isozyme 3E OS=Oryza sativa subsp. japonica GN=AMY1.4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (925), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 183/404 (45%), Positives = 256/404 (63%), Gaps = 20/404 (4%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES + W+ L KV +I+ +G T VWLPP +HS +P+GY+P LY L+
Sbjct: 26 QVLFQGFNWESWRKQGGWYNFLHEKVEEIASTGATHVWLPPPSHSVSPQGYMPGRLYDLD 85
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG-IP---LSWDE 138
+S YG+E LK+L+ V +ADIVINHR + G Y ++G P L W
Sbjct: 86 ASKYGTEAELKSLIEAFHDKNVECLADIVINHRCADYKDSRGVYCVFEGGTPDGRLDWGP 145
Query: 139 HAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
+ T + G G+ TG F P+IDH V++++ WL WLR +GF +R DF
Sbjct: 146 DMICSDDTQYSNGRGHRDTGAGFGAAPDIDHLNPRVQRELTDWLNWLRTDLGFDGWRLDF 205
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWIDGTGQLSA 253
A+GYSA + Y++ P F VGE W S YN G NQD+ RQ ++NW++G G+ +
Sbjct: 206 AKGYSAPLARIYVDNTNPTFVVGEIWSSLIYNGDGKPSTNQDADRQELVNWVEGVGKPAT 265
Query: 254 AFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSN 313
AFDFTTKGILQ AV+G+ WRL D GK PG+MGW P +AVTF+DNHDTGSTQ+ WPFPS+
Sbjct: 266 AFDFTTKGILQAAVQGELWRLHDGNGKAPGLMGWMPDQAVTFVDNHDTGSTQSLWPFPSD 325
Query: 314 HIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSN 373
+M+GYAYIL HPGIP +FYDH +DW ++ ++I L ++R + IH+ S++ IL+A+ +
Sbjct: 326 KVMQGYAYILTHPGIPCIFYDHVFDW--NLQHEIATLAEIRSRNGIHAESTLDILKAEGD 383
Query: 374 LYSAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAVWHK 413
+Y A+I KV K+G G P+ ++ + G+ Y VW K
Sbjct: 384 IYVAMIDGKVITKLGPRYDAGGIIPS--DFHVVAHGNDYCVWEK 425
|
Important for breakdown of endosperm starch during germination. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P04750|AMY6_HORVU Alpha-amylase type B isozyme OS=Hordeum vulgare GN=AMY1.6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 358 bits (918), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 191/408 (46%), Positives = 258/408 (63%), Gaps = 24/408 (5%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES KH+ W+ L KV DI+ +G T VWLPPA+ S A +GY+P LY L+
Sbjct: 25 QVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGVTHVWLPPASQSVAEQGYMPGRLYDLD 84
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG----IPLSWDE 138
+S YG++ LK+L+ + V+A+ADIVINHR + G Y ++G L W
Sbjct: 85 ASKYGNKAQLKSLIGALHGKAVKAIADIVINHRTAERKDGRGIYCIFEGGTPDARLDWGP 144
Query: 139 HAVT----SCTGGLGNGSTGD--NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRF 192
H + G GN T +F P+IDH V+K+++ WL WLR GF +RF
Sbjct: 145 HMICRDDRPYPDGTGNRPTRTRADFGAAPDIDHLNPRVQKELVEWLNWLRTDDGFDGWRF 204
Query: 193 DFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWIDGTGQL 251
DFA+GYSA K Y++ + P F+V E W S Y G + NQD HRQ ++NW++ G
Sbjct: 205 DFAKGYSADVAKIYVDRSEPSFAVAEIWTSLAYGGDGKPNLNQDPHRQELVNWVNKVGGS 264
Query: 252 SAA--FDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWP 309
A FDFTTKGIL AV+G+ WRLR GK PG++GWWP++AVTF+DNHDTGSTQ WP
Sbjct: 265 GPATTFDFTTKGILNVAVEGELWRLRGTDGKAPGMIGWWPAKAVTFVDNHDTGSTQHMWP 324
Query: 310 FPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILE 369
FPS+ +M+GYAYIL HPG P +FYDHF+DWG + +I +L+ +R +Q IHS S ++I+E
Sbjct: 325 FPSDRVMQGYAYILTHPGNPCIFYDHFFDWG--LKEEIDRLVSIRTRQGIHSESKLQIME 382
Query: 370 AQSNLYSAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAVWHK 413
A ++LY A I KV +K+G G P G + + G+ YAVW K
Sbjct: 383 ADADLYLAEIEGKVIVKLGPRYDVGHLIPEG--FKVVAHGNDYAVWEK 428
|
Hordeum vulgare (taxid: 4513) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P27932|AMY3A_ORYSJ Alpha-amylase isozyme 3A OS=Oryza sativa subsp. japonica GN=AMY1.2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 356 bits (913), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 178/404 (44%), Positives = 257/404 (63%), Gaps = 20/404 (4%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
+ILFQGFNW+S K W+ L+ +V DI+ +G T VWLPP THS +P+GY+P LY LN
Sbjct: 29 QILFQGFNWDSWKKQGGWYNMLKDQVGDIASAGVTHVWLPPPTHSVSPQGYMPGRLYDLN 88
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGI----PLSWDE 138
+S YG++ LK+L+ ++ +ADIV+NHR + G Y + G L W
Sbjct: 89 ASKYGTKAELKSLIAAFHAKGIKCVADIVVNHRCADDKDGRGVYCIFKGGGPRGCLDWGP 148
Query: 139 HAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
+ T + G G+ TG +F P+IDH V++++ WLRWLR VGF +R DF
Sbjct: 149 SMICCDDTQYSDGTGHRDTGADFAAAPDIDHLNPLVQRELSDWLRWLRRDVGFDGWRLDF 208
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDY-NQDSHRQRIINWIDGTGQLSA 253
A+GYSA + Y++ ARP F V E W+S +Y+ G NQD RQ ++NW+ G +
Sbjct: 209 AKGYSAAVARTYVQNARPSFVVAEIWNSLSYDGDGKPAANQDGQRQELVNWVKQVGGPAT 268
Query: 254 AFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSN 313
AFDFTTKGILQ AV+G+ WR+RD GK PG++GW+P +AVTF+DNHDTGSTQ WPFPS+
Sbjct: 269 AFDFTTKGILQSAVQGELWRMRDKDGKAPGMIGWYPEKAVTFVDNHDTGSTQRMWPFPSD 328
Query: 314 HIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSN 373
++ GYAYIL HPG+P +FYDH +DW ++ +I L R++ I++ S +++L A+S+
Sbjct: 329 KVILGYAYILTHPGVPCIFYDHVFDW--NLKQEINALAATRKRNGINAGSKLRVLAAESD 386
Query: 374 LYSAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAVWHK 413
+Y A++ ++V KIG G+ P+ ++ + G+ Y VW K
Sbjct: 387 MYVAMVDERVITKIGPRIDVGNIIPS--DFHIVAHGNDYCVWEK 428
|
Important for breakdown of endosperm starch during germination. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 413 | ||||||
| 60652323 | 414 | cytosolic alpha-amylase [Malus x domesti | 0.978 | 0.975 | 0.866 | 0.0 | |
| 7532799 | 413 | alpha-amylase [Malus x domestica] | 1.0 | 1.0 | 0.845 | 0.0 | |
| 224065715 | 406 | predicted protein [Populus trichocarpa] | 0.973 | 0.990 | 0.860 | 0.0 | |
| 15222959 | 413 | alpha-amylase-like 2 [Arabidopsis thalia | 1.0 | 1.0 | 0.820 | 0.0 | |
| 359492943 | 411 | PREDICTED: alpha-amylase type B isozyme- | 0.995 | 1.0 | 0.861 | 0.0 | |
| 297839489 | 413 | hypothetical protein ARALYDRAFT_316534 [ | 1.0 | 1.0 | 0.825 | 0.0 | |
| 52851182 | 413 | alpha-amylase [Plantago major] | 0.992 | 0.992 | 0.829 | 0.0 | |
| 255539112 | 398 | alpha-amylase, putative [Ricinus communi | 0.958 | 0.994 | 0.840 | 0.0 | |
| 147780614 | 397 | hypothetical protein VITISV_031847 [Viti | 0.953 | 0.992 | 0.873 | 0.0 | |
| 6573706 | 412 | T23E18.6 [Arabidopsis thaliana] | 0.990 | 0.992 | 0.802 | 0.0 |
| >gi|60652323|gb|AAX33234.1| cytosolic alpha-amylase [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/404 (86%), Positives = 377/404 (93%)
Query: 10 ETNQQTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF 69
E QQ D+GA +RNGREILFQ FNWES KHDWWRNLE KVPDI +SGFTS WLPPAT SF
Sbjct: 11 ENAQQNDIGAAVRNGREILFQAFNWESHKHDWWRNLETKVPDIGRSGFTSAWLPPATQSF 70
Query: 70 APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRY 129
APEGYLPQ++YSLNS YGSE+L+K+LL KMKQHKVRAMADIVINHRVGTT+GHGG YNRY
Sbjct: 71 APEGYLPQDIYSLNSKYGSENLIKSLLQKMKQHKVRAMADIVINHRVGTTRGHGGMYNRY 130
Query: 130 DGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQD 189
DGI LSWDE AVTSCTGGLGN STGDNFHGVPNIDH+Q FVRKDI WL+WLRN VGFQD
Sbjct: 131 DGISLSWDERAVTSCTGGLGNRSTGDNFHGVPNIDHSQPFVRKDITGWLQWLRNNVGFQD 190
Query: 190 FRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTG 249
FRFDFARGYSAKYVKEYIEGA+PIFSVGEYWDSCNYN HGLDYNQDSHRQRI+NWI+GTG
Sbjct: 191 FRFDFARGYSAKYVKEYIEGAKPIFSVGEYWDSCNYNDHGLDYNQDSHRQRIVNWINGTG 250
Query: 250 QLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWP 309
QLS AFDFTTKGILQEAVKGQ WRLRD QGKPPG++GWWPSRAVTFLDNHDTGSTQAHWP
Sbjct: 251 QLSTAFDFTTKGILQEAVKGQLWRLRDPQGKPPGLIGWWPSRAVTFLDNHDTGSTQAHWP 310
Query: 310 FPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILE 369
FPSNHIMEGYAYILMHPGIP+VFYDHFYDWGDSIH+QIVKL+D+R++QDIHSRSSI ILE
Sbjct: 311 FPSNHIMEGYAYILMHPGIPTVFYDHFYDWGDSIHDQIVKLIDIRKRQDIHSRSSITILE 370
Query: 370 AQSNLYSAIIGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 413
AQ NLYSAIIG+K+CMKIGDGSWCPA +EWTLATSGH+YAVW+K
Sbjct: 371 AQPNLYSAIIGEKICMKIGDGSWCPASREWTLATSGHRYAVWNK 414
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7532799|gb|AAF63239.1|AF153828_1 alpha-amylase [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/413 (84%), Positives = 376/413 (91%)
Query: 1 MDYTSKGFDETNQQTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSV 60
M Y S E QQTD+GA +RNGREIL Q FNWES KHDWWRNLE KVPDI +SGFTS
Sbjct: 1 MGYGSNDSRENAQQTDIGAAVRNGREILLQAFNWESHKHDWWRNLETKVPDIGRSGFTSA 60
Query: 61 WLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ 120
WLPPATHSFAPEGYLPQ++YSLNS YGSE+LL +LLHKMKQHKVRAMADIVINH VGTT+
Sbjct: 61 WLPPATHSFAPEGYLPQDIYSLNSKYGSENLLTSLLHKMKQHKVRAMADIVINHPVGTTR 120
Query: 121 GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRW 180
GHGGKYNRYDGI LSWDE A TSCTGGLGN STGDNFHGVPNIDH+Q FVRKDI WL+W
Sbjct: 121 GHGGKYNRYDGISLSWDERAATSCTGGLGNPSTGDNFHGVPNIDHSQLFVRKDITGWLQW 180
Query: 181 LRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQR 240
LRN VGFQDFRFDFARGYSAKYVKEYIEGA+PIFSVGEYWDSCNYN HGLDY QDSHRQ
Sbjct: 181 LRNNVGFQDFRFDFARGYSAKYVKEYIEGAKPIFSVGEYWDSCNYNGHGLDYTQDSHRQP 240
Query: 241 IINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHD 300
I+NWI+GTGQLS AFDFTTKGILQEAVKGQ WRLRD QGKPPGV+GWWPSR+VTFLDNHD
Sbjct: 241 IVNWINGTGQLSTAFDFTTKGILQEAVKGQLWRLRDPQGKPPGVVGWWPSRSVTFLDNHD 300
Query: 301 TGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIH 360
TGSTQAHWPFP+NHIMEGY YIL HPGIP+VFYDHFYDWGDSIH+QIVKL+D+R++QDIH
Sbjct: 301 TGSTQAHWPFPTNHIMEGYTYILTHPGIPTVFYDHFYDWGDSIHDQIVKLIDIRKRQDIH 360
Query: 361 SRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 413
SRSSI ILEAQ NLYSA+IG+KVCMKIGDGSWCPAG+EWTLAT GH+YAVW+K
Sbjct: 361 SRSSITILEAQPNLYSAMIGEKVCMKIGDGSWCPAGREWTLATCGHRYAVWNK 413
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065715|ref|XP_002301935.1| predicted protein [Populus trichocarpa] gi|222843661|gb|EEE81208.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/402 (86%), Positives = 374/402 (93%)
Query: 12 NQQTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAP 71
+QQTD GAV+R+GREIL Q FNWES KHDWWR LE+KV DI+KSGFT+ WLPP T+SFAP
Sbjct: 5 DQQTDNGAVLRSGREILLQAFNWESHKHDWWRKLEKKVADIAKSGFTTAWLPPPTNSFAP 64
Query: 72 EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG 131
EGYLPQNLY+LNSSYGSE LLKALL KMKQ+ VRAMADIVINHRVGTTQGHGG YNRYDG
Sbjct: 65 EGYLPQNLYNLNSSYGSEQLLKALLEKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDG 124
Query: 132 IPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFR 191
+PLSWDE AVTSCTGGLGN STGDNF+GVPNIDHTQHFVRKDI AWL+WLR VGFQDFR
Sbjct: 125 VPLSWDERAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDITAWLQWLRKNVGFQDFR 184
Query: 192 FDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQL 251
FDFARGYS KYVKEYIEGA+PIFSVGEYWDSCNYN H L+YNQDSHRQRI+NWID TGQL
Sbjct: 185 FDFARGYSPKYVKEYIEGAKPIFSVGEYWDSCNYNGHFLEYNQDSHRQRIVNWIDLTGQL 244
Query: 252 SAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFP 311
SAAFDFTTKGILQEAVKGQFWRLRD QGKPPGV+GWWPSRAVTF+DNHDTGSTQAHWPFP
Sbjct: 245 SAAFDFTTKGILQEAVKGQFWRLRDPQGKPPGVLGWWPSRAVTFIDNHDTGSTQAHWPFP 304
Query: 312 SNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQ 371
S+HIMEGYAY+L HPG+P+VFYDHFYDWG+SIH QIVKL+D+R+ QDIHSRSSI+I EAQ
Sbjct: 305 SDHIMEGYAYLLTHPGMPTVFYDHFYDWGNSIHEQIVKLIDIRKHQDIHSRSSIRIFEAQ 364
Query: 372 SNLYSAIIGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 413
NLYSAIIG+KVCMKIGDGSWCPAGKEWTLATSGH+YAVW K
Sbjct: 365 PNLYSAIIGEKVCMKIGDGSWCPAGKEWTLATSGHRYAVWQK 406
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222959|ref|NP_177740.1| alpha-amylase-like 2 [Arabidopsis thaliana] gi|75301385|sp|Q8LFG1.1|AMY2_ARATH RecName: Full=Probable alpha-amylase 2; Short=AtAMY2; AltName: Full=1,4-alpha-D-glucan glucanohydrolase gi|21537093|gb|AAM61434.1| alpha-amylase, putative [Arabidopsis thaliana] gi|62320476|dbj|BAD94995.1| alpha-amylase like protein [Arabidopsis thaliana] gi|98960989|gb|ABF58978.1| At1g76130 [Arabidopsis thaliana] gi|332197679|gb|AEE35800.1| alpha-amylase-like 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/413 (82%), Positives = 382/413 (92%)
Query: 1 MDYTSKGFDETNQQTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSV 60
M Y + FDE N QTD+G VIR+GRE++ Q +NWES K+DWWRNL+ KVPDI+KSGFTS
Sbjct: 1 MGYYNNVFDECNDQTDIGRVIRDGREVILQAYNWESHKYDWWRNLDGKVPDIAKSGFTSA 60
Query: 61 WLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ 120
WLPP + S APEGYLPQ+LYSLNS+YGSEHLLK+LL KMKQ+KVRAMADIVINHRVGTT+
Sbjct: 61 WLPPPSQSLAPEGYLPQDLYSLNSAYGSEHLLKSLLRKMKQYKVRAMADIVINHRVGTTR 120
Query: 121 GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRW 180
GHGG YNRYDGI L WDEHAVTSCTGGLGN STGDNF+GVPN+DHTQHFVRKDII WLRW
Sbjct: 121 GHGGMYNRYDGISLPWDEHAVTSCTGGLGNRSTGDNFNGVPNVDHTQHFVRKDIIGWLRW 180
Query: 181 LRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQR 240
LRNTVGFQDFRFDFARGYSA YVKEYI A+P+FSVGE WDSCNYN HGLDYNQDSHRQR
Sbjct: 181 LRNTVGFQDFRFDFARGYSANYVKEYIGAAKPLFSVGECWDSCNYNGHGLDYNQDSHRQR 240
Query: 241 IINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHD 300
II+WID TGQ+SAAFDFTTKGILQEAVKGQ+WRL DAQGKPPGVMGWWPSRAVTFLDNHD
Sbjct: 241 IISWIDATGQISAAFDFTTKGILQEAVKGQYWRLCDAQGKPPGVMGWWPSRAVTFLDNHD 300
Query: 301 TGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIH 360
TGSTQAHWPFPS+H+MEGYAYIL HPGIP VFYDHFYDWG SIH+QIVKL+D+RR+QDIH
Sbjct: 301 TGSTQAHWPFPSHHVMEGYAYILTHPGIPCVFYDHFYDWGSSIHDQIVKLIDIRRRQDIH 360
Query: 361 SRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 413
SRS++++L+A+SNLY+AI+G+K+CMK+GDGSWCP+G++WTLATSGH+YAVWHK
Sbjct: 361 SRSTVRVLKAESNLYAAIVGEKICMKLGDGSWCPSGRDWTLATSGHRYAVWHK 413
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359492943|ref|XP_002284805.2| PREDICTED: alpha-amylase type B isozyme-like [Vitis vinifera] gi|302141692|emb|CBI18895.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/413 (86%), Positives = 383/413 (92%), Gaps = 2/413 (0%)
Query: 1 MDYTSKGFDETNQQTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSV 60
M Y + GFDE+ QQ+D GAV+RNGREIL QGFNWES KHDWWRNLE+KVPD++KSGFTSV
Sbjct: 1 MGYMNNGFDES-QQSDYGAVLRNGREILLQGFNWESHKHDWWRNLEKKVPDVAKSGFTSV 59
Query: 61 WLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ 120
WLPPA+ SF+PEGYLPQNLYSLNSSYGSEHLLK LL K+ QHKVRAMADIVINHRVGTTQ
Sbjct: 60 WLPPASQSFSPEGYLPQNLYSLNSSYGSEHLLKNLLQKLNQHKVRAMADIVINHRVGTTQ 119
Query: 121 GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRW 180
GHGG YNRYDGIPLSW+EHAVTSCTGGLGN S+G NFHGVPNIDHTQ+FVR D+I WL+W
Sbjct: 120 GHGGMYNRYDGIPLSWNEHAVTSCTGGLGNRSSGANFHGVPNIDHTQNFVRNDLIGWLKW 179
Query: 181 LRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQR 240
LR VGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWD CNYN++GLDYNQDSHRQR
Sbjct: 180 LRG-VGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDPCNYNNNGLDYNQDSHRQR 238
Query: 241 IINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHD 300
I+NWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRD QGKPPGVMGWWPSRAVTF+DNHD
Sbjct: 239 IVNWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDRQGKPPGVMGWWPSRAVTFIDNHD 298
Query: 301 TGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIH 360
TGSTQAHWPFP NH+MEGYAYIL HPGIP+VFYDHFYDW SIHN+I KL+ VR++QDIH
Sbjct: 299 TGSTQAHWPFPMNHLMEGYAYILTHPGIPTVFYDHFYDWAGSIHNEIAKLIAVRKEQDIH 358
Query: 361 SRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 413
SRSSIKILEAQ NLYSAIIGDKVCMKIGDGSWCP G+EWTLATSG +YAVW K
Sbjct: 359 SRSSIKILEAQPNLYSAIIGDKVCMKIGDGSWCPGGREWTLATSGQRYAVWKK 411
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839489|ref|XP_002887626.1| hypothetical protein ARALYDRAFT_316534 [Arabidopsis lyrata subsp. lyrata] gi|297333467|gb|EFH63885.1| hypothetical protein ARALYDRAFT_316534 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/413 (82%), Positives = 381/413 (92%)
Query: 1 MDYTSKGFDETNQQTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSV 60
M Y + FDE N QTD+G V+R+GRE++ Q +NWES KHDWWRNL+ KVPDI+KSGFTS
Sbjct: 1 MGYHNNVFDECNDQTDIGRVLRDGREVILQAYNWESHKHDWWRNLDGKVPDIAKSGFTSA 60
Query: 61 WLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ 120
WLPP + S APEGYLPQ+LYSLNS+YGSEHLLK+LL KMKQ+KVRAMADIVINHRVGTT+
Sbjct: 61 WLPPPSQSLAPEGYLPQDLYSLNSAYGSEHLLKSLLRKMKQYKVRAMADIVINHRVGTTR 120
Query: 121 GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRW 180
GHGG YNRYDGI L WDEHAVTSCTGGLGN STGDNF+GVPN+DHTQHFVRKDII WLRW
Sbjct: 121 GHGGMYNRYDGISLPWDEHAVTSCTGGLGNRSTGDNFNGVPNVDHTQHFVRKDIIGWLRW 180
Query: 181 LRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQR 240
LRNTVGFQDFRFDFARGYSA YVKEYI A+P+FSVGE WDSCNYN HGLDYNQDSHRQR
Sbjct: 181 LRNTVGFQDFRFDFARGYSANYVKEYIGAAKPLFSVGECWDSCNYNGHGLDYNQDSHRQR 240
Query: 241 IINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHD 300
II+WID TGQ+SAAFDFTTKGILQEAVKGQ+WRL DAQGKPPGVMGWWPSRAVTFLDNHD
Sbjct: 241 IISWIDATGQISAAFDFTTKGILQEAVKGQYWRLCDAQGKPPGVMGWWPSRAVTFLDNHD 300
Query: 301 TGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIH 360
TGSTQAHWPFPS+HIMEGYAYIL HPGIP VFYDHFYDWG SIH+QIVKL+D+RR+QDIH
Sbjct: 301 TGSTQAHWPFPSHHIMEGYAYILTHPGIPCVFYDHFYDWGSSIHDQIVKLIDIRRRQDIH 360
Query: 361 SRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 413
SRS+I++L+A+SNLY+AI+G+K+CMK+GDGSWCP+G +WTLATSGH+YAVWHK
Sbjct: 361 SRSTIRVLKAESNLYAAIVGEKLCMKLGDGSWCPSGGDWTLATSGHRYAVWHK 413
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|52851182|emb|CAH58639.1| alpha-amylase [Plantago major] | Back alignment and taxonomy information |
|---|
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/411 (82%), Positives = 369/411 (89%), Gaps = 1/411 (0%)
Query: 3 YTSKGFDETNQQTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWL 62
YTS ++ N Q D A I +G+EIL Q FNWES KHDWW+NLE+KVPDI+KSGFTS WL
Sbjct: 4 YTSNEHEQKNNQIDPAASIHSGKEILLQAFNWESHKHDWWKNLEKKVPDIAKSGFTSAWL 63
Query: 63 PPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGH 122
PP T+SFAPEGYLPQNLYSLNS+YGSEHLLKALL+KMK HKVRAMADIVINHRVGTTQGH
Sbjct: 64 PPPTNSFAPEGYLPQNLYSLNSAYGSEHLLKALLNKMKTHKVRAMADIVINHRVGTTQGH 123
Query: 123 GGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLR 182
G YNRYDGIPLSW+EHAVTSCTGG GN STGDNF GVPN+DHTQ FVRKDI WLRWLR
Sbjct: 124 NGMYNRYDGIPLSWNEHAVTSCTGGKGNKSTGDNFSGVPNVDHTQPFVRKDIANWLRWLR 183
Query: 183 NTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRII 242
T GF+DFRFDFARGYS KYVKEYIE A+PIFSVGEYWDSCNY L+YNQDSHRQR+I
Sbjct: 184 -TSGFEDFRFDFARGYSPKYVKEYIESAKPIFSVGEYWDSCNYKGQYLEYNQDSHRQRVI 242
Query: 243 NWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG 302
NWIDGTGQLSAAFDFTTKGILQ+AVKG+ WRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG
Sbjct: 243 NWIDGTGQLSAAFDFTTKGILQQAVKGELWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG 302
Query: 303 STQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSR 362
STQAHWPFPS+HIMEGYAYIL HPGIPSVFYDHFYDWG +IH+QIVKL+D+R+ Q IHSR
Sbjct: 303 STQAHWPFPSHHIMEGYAYILTHPGIPSVFYDHFYDWGTAIHDQIVKLIDIRKHQGIHSR 362
Query: 363 SSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 413
SSI I+EAQ NLY+A IGDKV MKIGDGSWCP+GKEWTLATSGH+YAVW K
Sbjct: 363 SSIHIIEAQPNLYAANIGDKVSMKIGDGSWCPSGKEWTLATSGHRYAVWQK 413
|
Source: Plantago major Species: Plantago major Genus: Plantago Family: Plantaginaceae Order: Lamiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539112|ref|XP_002510621.1| alpha-amylase, putative [Ricinus communis] gi|223551322|gb|EEF52808.1| alpha-amylase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/396 (84%), Positives = 366/396 (92%)
Query: 18 GAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQ 77
GA +RNG+EIL Q FNWES KHDWWRNLERKVPDI+KSGFTS WLPP + S +PEGYLPQ
Sbjct: 3 GAAVRNGKEILLQAFNWESHKHDWWRNLERKVPDIAKSGFTSAWLPPPSQSLSPEGYLPQ 62
Query: 78 NLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWD 137
NLYSLNS YGSEHLLKALL KMKQ+ VRAMADIVINHR+GTT+GHGG YNRYDGIP+ WD
Sbjct: 63 NLYSLNSVYGSEHLLKALLQKMKQYNVRAMADIVINHRIGTTKGHGGMYNRYDGIPIPWD 122
Query: 138 EHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARG 197
E AVT CTGGLGN STGDNF+GVPNIDHTQHFVRKDII WL+WLRN VGFQDFRFDFARG
Sbjct: 123 ERAVTLCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLKWLRNVVGFQDFRFDFARG 182
Query: 198 YSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDF 257
YSAKYVKEYIE A+PIFS+GEYWDSCNY+ L+Y+QDSHRQRI+NWID TGQLSAAFDF
Sbjct: 183 YSAKYVKEYIEAAKPIFSIGEYWDSCNYSGTYLEYSQDSHRQRIVNWIDCTGQLSAAFDF 242
Query: 258 TTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIME 317
TTKGILQEAVKGQ WRLRD++GKPPGVMGWWPSRAVTF+DNHDTGSTQ HWPFPS+HIME
Sbjct: 243 TTKGILQEAVKGQLWRLRDSKGKPPGVMGWWPSRAVTFIDNHDTGSTQGHWPFPSHHIME 302
Query: 318 GYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSA 377
GYAYIL HPGIP+VFYDHFYDWG+SIH QIVKL+D+R++QDI+SRSSI+ILEAQ NLYSA
Sbjct: 303 GYAYILTHPGIPTVFYDHFYDWGNSIHEQIVKLIDIRKRQDINSRSSIRILEAQPNLYSA 362
Query: 378 IIGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 413
IIG+KVCMKIGDGSW P+G+EWTLATSGH+YAVW K
Sbjct: 363 IIGEKVCMKIGDGSWSPSGREWTLATSGHRYAVWQK 398
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147780614|emb|CAN69120.1| hypothetical protein VITISV_031847 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/395 (87%), Positives = 369/395 (93%), Gaps = 1/395 (0%)
Query: 19 AVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQN 78
AV+R GREIL QGFNWES KHDWWRNLE+KVPD++KSGFTSVWLPPA+ SF+PEGYLPQN
Sbjct: 4 AVLRXGREILLQGFNWESHKHDWWRNLEKKVPDVAKSGFTSVWLPPASQSFSPEGYLPQN 63
Query: 79 LYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDE 138
LYSLNSSYGSEHLLK LL K+ QHKVRAMADIVINHRVGTTQGHGG YNRYDGIPLSW+E
Sbjct: 64 LYSLNSSYGSEHLLKNLLQKLNQHKVRAMADIVINHRVGTTQGHGGMYNRYDGIPLSWNE 123
Query: 139 HAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 198
HAVTSCTGGLGN S+G NFHGVPNIDHTQ+FVR D+I WL+WLR VGFQDFRFDFARGY
Sbjct: 124 HAVTSCTGGLGNRSSGANFHGVPNIDHTQNFVRNDLIGWLKWLRG-VGFQDFRFDFARGY 182
Query: 199 SAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFT 258
SAKYVKEYIEGARPIFSVGEYWD CNYN++GLDYNQDSHRQRI+NWIDGTGQLSAAFDFT
Sbjct: 183 SAKYVKEYIEGARPIFSVGEYWDPCNYNNNGLDYNQDSHRQRIVNWIDGTGQLSAAFDFT 242
Query: 259 TKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEG 318
TKGILQEAVKGQFWRLRD QGKPPGVMGWWPSRAVTF+DNHDTGSTQAHWPFP NH+MEG
Sbjct: 243 TKGILQEAVKGQFWRLRDRQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPMNHLMEG 302
Query: 319 YAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAI 378
YAYIL HPGIP+VFYDHFYDW SIHN+I KL+ VR++QDIHSRSSIKILEAQ NLYSAI
Sbjct: 303 YAYILTHPGIPTVFYDHFYDWAGSIHNEIAKLIAVRKEQDIHSRSSIKILEAQPNLYSAI 362
Query: 379 IGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 413
IGDKVCMKIGDGSWCP G+EWTLATSG +YAVW K
Sbjct: 363 IGDKVCMKIGDGSWCPGGREWTLATSGQRYAVWKK 397
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6573706|gb|AAF17626.1|AC009978_2 T23E18.6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/416 (80%), Positives = 375/416 (90%), Gaps = 7/416 (1%)
Query: 1 MDYTSKGFDETNQQTDLGAVIRNGREI---LFQGFNWESCKHDWWRNLERKVPDISKSGF 57
M Y + FDE N QTD+G N + L +NWES K+DWWRNL+ KVPDI+KSGF
Sbjct: 1 MGYYNNVFDECNDQTDIG----NNKAFNIGLSLAYNWESHKYDWWRNLDGKVPDIAKSGF 56
Query: 58 TSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117
TS WLPP + S APEGYLPQ+LYSLNS+YGSEHLLK+LL KMKQ+KVRAMADIVINHRVG
Sbjct: 57 TSAWLPPPSQSLAPEGYLPQDLYSLNSAYGSEHLLKSLLRKMKQYKVRAMADIVINHRVG 116
Query: 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAW 177
TT+GHGG YNRYDGI L WDEHAVTSCTGGLGN STGDNF+GVPN+DHTQHFVRKDII W
Sbjct: 117 TTRGHGGMYNRYDGISLPWDEHAVTSCTGGLGNRSTGDNFNGVPNVDHTQHFVRKDIIGW 176
Query: 178 LRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSH 237
LRWLRNTVGFQDFRFDFARGYSA YVKEYI A+P+FSVGE WDSCNYN HGLDYNQDSH
Sbjct: 177 LRWLRNTVGFQDFRFDFARGYSANYVKEYIGAAKPLFSVGECWDSCNYNGHGLDYNQDSH 236
Query: 238 RQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLD 297
RQRII+WID TGQ+SAAFDFTTKGILQEAVKGQ+WRL DAQGKPPGVMGWWPSRAVTFLD
Sbjct: 237 RQRIISWIDATGQISAAFDFTTKGILQEAVKGQYWRLCDAQGKPPGVMGWWPSRAVTFLD 296
Query: 298 NHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQ 357
NHDTGSTQAHWPFPS+H+MEGYAYIL HPGIP VFYDHFYDWG SIH+QIVKL+D+RR+Q
Sbjct: 297 NHDTGSTQAHWPFPSHHVMEGYAYILTHPGIPCVFYDHFYDWGSSIHDQIVKLIDIRRRQ 356
Query: 358 DIHSRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 413
DIHSRS++++L+A+SNLY+AI+G+K+CMK+GDGSWCP+G++WTLATSGH+YAVWHK
Sbjct: 357 DIHSRSTVRVLKAESNLYAAIVGEKICMKLGDGSWCPSGRDWTLATSGHRYAVWHK 412
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 413 | ||||||
| TAIR|locus:2199808 | 413 | AMY2 "alpha-amylase-like 2" [A | 1.0 | 1.0 | 0.820 | 1.6e-203 | |
| TAIR|locus:2196759 | 887 | AMY3 "alpha-amylase-like 3" [A | 0.932 | 0.434 | 0.492 | 7e-109 | |
| UNIPROTKB|P27934 | 437 | AMY1.4 "Alpha-amylase isozyme | 0.929 | 0.878 | 0.452 | 2.5e-97 | |
| UNIPROTKB|P17654 | 434 | AMY1.1 "Alpha-amylase" [Oryza | 0.929 | 0.884 | 0.460 | 1.6e-95 | |
| UNIPROTKB|P27932 | 440 | AMY1.2 "Alpha-amylase isozyme | 0.929 | 0.872 | 0.443 | 1.4e-94 | |
| UNIPROTKB|P27937 | 438 | AMY1.6 "Alpha-amylase isozyme | 0.929 | 0.876 | 0.440 | 5.5e-93 | |
| UNIPROTKB|P27933 | 436 | AMY1.3 "Alpha-amylase isozyme | 0.929 | 0.880 | 0.438 | 1.1e-92 | |
| UNIPROTKB|P27939 | 437 | AMY1.7 "Alpha-amylase isozyme | 0.929 | 0.878 | 0.440 | 2.4e-92 | |
| TAIR|locus:2117398 | 423 | AMY1 "alpha-amylase-like" [Ara | 0.912 | 0.891 | 0.463 | 1.3e-91 | |
| UNIPROTKB|P26612 | 495 | amyA "alpha-amylase" [Escheric | 0.387 | 0.323 | 0.315 | 4.3e-14 |
| TAIR|locus:2199808 AMY2 "alpha-amylase-like 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1969 (698.2 bits), Expect = 1.6e-203, P = 1.6e-203
Identities = 339/413 (82%), Positives = 382/413 (92%)
Query: 1 MDYTSKGFDETNQQTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSV 60
M Y + FDE N QTD+G VIR+GRE++ Q +NWES K+DWWRNL+ KVPDI+KSGFTS
Sbjct: 1 MGYYNNVFDECNDQTDIGRVIRDGREVILQAYNWESHKYDWWRNLDGKVPDIAKSGFTSA 60
Query: 61 WLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ 120
WLPP + S APEGYLPQ+LYSLNS+YGSEHLLK+LL KMKQ+KVRAMADIVINHRVGTT+
Sbjct: 61 WLPPPSQSLAPEGYLPQDLYSLNSAYGSEHLLKSLLRKMKQYKVRAMADIVINHRVGTTR 120
Query: 121 GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRW 180
GHGG YNRYDGI L WDEHAVTSCTGGLGN STGDNF+GVPN+DHTQHFVRKDII WLRW
Sbjct: 121 GHGGMYNRYDGISLPWDEHAVTSCTGGLGNRSTGDNFNGVPNVDHTQHFVRKDIIGWLRW 180
Query: 181 LRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQR 240
LRNTVGFQDFRFDFARGYSA YVKEYI A+P+FSVGE WDSCNYN HGLDYNQDSHRQR
Sbjct: 181 LRNTVGFQDFRFDFARGYSANYVKEYIGAAKPLFSVGECWDSCNYNGHGLDYNQDSHRQR 240
Query: 241 IINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHD 300
II+WID TGQ+SAAFDFTTKGILQEAVKGQ+WRL DAQGKPPGVMGWWPSRAVTFLDNHD
Sbjct: 241 IISWIDATGQISAAFDFTTKGILQEAVKGQYWRLCDAQGKPPGVMGWWPSRAVTFLDNHD 300
Query: 301 TGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIH 360
TGSTQAHWPFPS+H+MEGYAYIL HPGIP VFYDHFYDWG SIH+QIVKL+D+RR+QDIH
Sbjct: 301 TGSTQAHWPFPSHHVMEGYAYILTHPGIPCVFYDHFYDWGSSIHDQIVKLIDIRRRQDIH 360
Query: 361 SRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 413
SRS++++L+A+SNLY+AI+G+K+CMK+GDGSWCP+G++WTLATSGH+YAVWHK
Sbjct: 361 SRSTVRVLKAESNLYAAIVGEKICMKLGDGSWCPSGRDWTLATSGHRYAVWHK 413
|
|
| TAIR|locus:2196759 AMY3 "alpha-amylase-like 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1076 (383.8 bits), Expect = 7.0e-109, P = 7.0e-109
Identities = 195/396 (49%), Positives = 268/396 (67%)
Query: 23 NGREILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYS 81
+G EIL QGFNWES K W+ L+ K +++ GFT +WLPP T S +PEGY+P++LY+
Sbjct: 493 SGFEILCQGFNWESNKSGRWYLELQEKADELASLGFTVLWLPPPTESVSPEGYMPKDLYN 552
Query: 82 LNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAV 141
LNS YG+ LK + K + ++ + D V+NHR + G +N + G L+WD+ AV
Sbjct: 553 LNSRYGTIDELKDTVKKFHKVGIKVLGDAVLNHRCAHFKNQNGVWNLFGG-RLNWDDRAV 611
Query: 142 TSCTG---GLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 198
+ G GN S+GDNFH PNIDH+Q FVRKDI WL W+ VG+ +R DF RG+
Sbjct: 612 VADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWMMEEVGYDGWRLDFVRGF 671
Query: 199 SAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFT 258
YVK+Y++ ++P F+VGEYWDS +Y +DYNQD+HRQRI++WI+ T + AFD T
Sbjct: 672 WGGYVKDYMDASKPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINATSGAAGAFDVT 731
Query: 259 TKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIME 317
TKGIL A+ K ++WRL D +GKPPGV+GWWPSRAVTF++NHDTGSTQ HW FP M+
Sbjct: 732 TKGILHTALQKCEYWRLSDPKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEGKEMQ 791
Query: 318 GYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSA 377
GYAYIL HPG P+VF+DH + H++I L+ +R +Q +H RS + I +++ ++Y+A
Sbjct: 792 GYAYILTHPGTPAVFFDHIFS---DYHSEIAALLSLRNRQKLHCRSEVNIDKSERDVYAA 848
Query: 378 IIGDKVCMKIGDGSWCP--AGKEWTLATSGHKYAVW 411
II +KV MKIG G + P + W++A G Y VW
Sbjct: 849 IIDEKVAMKIGPGHYEPPNGSQNWSVAVEGRDYKVW 884
|
|
| UNIPROTKB|P27934 AMY1.4 "Alpha-amylase isozyme 3E" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 183/404 (45%), Positives = 256/404 (63%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES + W+ L KV +I+ +G T VWLPP +HS +P+GY+P LY L+
Sbjct: 26 QVLFQGFNWESWRKQGGWYNFLHEKVEEIASTGATHVWLPPPSHSVSPQGYMPGRLYDLD 85
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG-IP---LSWDE 138
+S YG+E LK+L+ V +ADIVINHR + G Y ++G P L W
Sbjct: 86 ASKYGTEAELKSLIEAFHDKNVECLADIVINHRCADYKDSRGVYCVFEGGTPDGRLDWGP 145
Query: 139 HAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
+ T + G G+ TG F P+IDH V++++ WL WLR +GF +R DF
Sbjct: 146 DMICSDDTQYSNGRGHRDTGAGFGAAPDIDHLNPRVQRELTDWLNWLRTDLGFDGWRLDF 205
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWIDGTGQLSA 253
A+GYSA + Y++ P F VGE W S YN G NQD+ RQ ++NW++G G+ +
Sbjct: 206 AKGYSAPLARIYVDNTNPTFVVGEIWSSLIYNGDGKPSTNQDADRQELVNWVEGVGKPAT 265
Query: 254 AFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSN 313
AFDFTTKGILQ AV+G+ WRL D GK PG+MGW P +AVTF+DNHDTGSTQ+ WPFPS+
Sbjct: 266 AFDFTTKGILQAAVQGELWRLHDGNGKAPGLMGWMPDQAVTFVDNHDTGSTQSLWPFPSD 325
Query: 314 HIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSN 373
+M+GYAYIL HPGIP +FYDH +DW ++ ++I L ++R + IH+ S++ IL+A+ +
Sbjct: 326 KVMQGYAYILTHPGIPCIFYDHVFDW--NLQHEIATLAEIRSRNGIHAESTLDILKAEGD 383
Query: 374 LYSAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAVWHK 413
+Y A+I KV K+G G P+ ++ + G+ Y VW K
Sbjct: 384 IYVAMIDGKVITKLGPRYDAGGIIPS--DFHVVAHGNDYCVWEK 425
|
|
| UNIPROTKB|P17654 AMY1.1 "Alpha-amylase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 950 (339.5 bits), Expect = 1.6e-95, P = 1.6e-95
Identities = 187/406 (46%), Positives = 252/406 (62%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES K + W+ L KV DI+ +G T VWLPP +HS +GY+P LY L+
Sbjct: 32 QVLFQGFNWESWKENGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVGEQGYMPGRLYDLD 91
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG-IP---LSWDE 138
+S YG+E LK+L+ V+ +ADIVINHR + G Y ++G P L W
Sbjct: 92 ASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGP 151
Query: 139 HAVTSCT---GGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195
H + G GN TG +F P+IDH V++++I WL WL+ +GF +R DFA
Sbjct: 152 HMICRDDPYGDGTGNPDTGADFAAAPDIDHLNKRVQRELIGWLDWLKMDIGFDAWRLDFA 211
Query: 196 RGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWID---GTGQL 251
+GYSA K YI+ P F+V E W S G +Y+Q++HRQ ++NW+D G
Sbjct: 212 KGYSADMAKIYIDATEPSFAVAEIWTSMANGGDGKPNYDQNAHRQELVNWVDRVGGANSN 271
Query: 252 SAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFP 311
+ AFDFTTKGIL AV+G+ WRLR GK PG++GWWP++A TF+DNHDTGSTQ WPFP
Sbjct: 272 ATAFDFTTKGILNVAVEGELWRLRGEDGKAPGMIGWWPAKATTFVDNHDTGSTQHLWPFP 331
Query: 312 SNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQ 371
S+ +M+GYAYIL HPG P +FYDHF+DWG + +I +L+ +R +Q IH S ++I+EA
Sbjct: 332 SDKVMQGYAYILTHPGNPCIFYDHFFDWG--LKEEIERLVSIRNRQGIHPASELRIMEAD 389
Query: 372 SNLYSAIIGDKVCMKIGDG----SWCPAGKEWTLATSGHKYAVWHK 413
S+LY A I KV KIG P G + + G YA+W K
Sbjct: 390 SDLYLAEIDGKVITKIGPRYDVEHLIPEG--FQVVAHGDGYAIWEK 433
|
|
| UNIPROTKB|P27932 AMY1.2 "Alpha-amylase isozyme 3A" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 179/404 (44%), Positives = 258/404 (63%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
+ILFQGFNW+S K W+ L+ +V DI+ +G T VWLPP THS +P+GY+P LY LN
Sbjct: 29 QILFQGFNWDSWKKQGGWYNMLKDQVGDIASAGVTHVWLPPPTHSVSPQGYMPGRLYDLN 88
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGI-P---LSWDE 138
+S YG++ LK+L+ ++ +ADIV+NHR + G Y + G P L W
Sbjct: 89 ASKYGTKAELKSLIAAFHAKGIKCVADIVVNHRCADDKDGRGVYCIFKGGGPRGCLDWGP 148
Query: 139 HAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
+ T + G G+ TG +F P+IDH V++++ WLRWLR VGF +R DF
Sbjct: 149 SMICCDDTQYSDGTGHRDTGADFAAAPDIDHLNPLVQRELSDWLRWLRRDVGFDGWRLDF 208
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDY-NQDSHRQRIINWIDGTGQLSA 253
A+GYSA + Y++ ARP F V E W+S +Y+ G NQD RQ ++NW+ G +
Sbjct: 209 AKGYSAAVARTYVQNARPSFVVAEIWNSLSYDGDGKPAANQDGQRQELVNWVKQVGGPAT 268
Query: 254 AFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSN 313
AFDFTTKGILQ AV+G+ WR+RD GK PG++GW+P +AVTF+DNHDTGSTQ WPFPS+
Sbjct: 269 AFDFTTKGILQSAVQGELWRMRDKDGKAPGMIGWYPEKAVTFVDNHDTGSTQRMWPFPSD 328
Query: 314 HIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSN 373
++ GYAYIL HPG+P +FYDH +DW ++ +I L R++ I++ S +++L A+S+
Sbjct: 329 KVILGYAYILTHPGVPCIFYDHVFDW--NLKQEINALAATRKRNGINAGSKLRVLAAESD 386
Query: 374 LYSAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAVWHK 413
+Y A++ ++V KIG G+ P+ ++ + G+ Y VW K
Sbjct: 387 MYVAMVDERVITKIGPRIDVGNIIPS--DFHIVAHGNDYCVWEK 428
|
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| UNIPROTKB|P27937 AMY1.6 "Alpha-amylase isozyme 3B" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
Identities = 178/404 (44%), Positives = 251/404 (62%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES K W+ L V DI+ +G T VWLPP +HS AP+GY+P LY L+
Sbjct: 27 QVLFQGFNWESWKKQGGWYNFLHGHVDDIAATGVTHVWLPPPSHSVAPQGYMPGRLYDLD 86
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG-IP---LSWDE 138
+S YG+ L++L+ ++ +ADIVINHR + G Y ++G P L W
Sbjct: 87 ASKYGTGAELRSLIAAFHSKGIKCVADIVINHRCADYKDSRGIYCIFEGGTPDSRLDWGP 146
Query: 139 HAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
+ T + G G+ TG +F P+IDH V+ ++ WL WL++ VGF +R DF
Sbjct: 147 DMICSDDTQYSNGRGHRDTGADFGAAPDIDHLNTRVQTELSDWLNWLKSDVGFDGWRLDF 206
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWIDGTGQLSA 253
A+GYSA K Y++ P F V E W + Y+ +G +NQD RQ ++NW G ++
Sbjct: 207 AKGYSAAVAKTYVDNTDPSFVVAEIWSNMRYDGNGEPSWNQDGDRQELVNWAQAVGGPAS 266
Query: 254 AFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSN 313
AFDFTTKG LQ AV+G+ WR++D GK PG++GW P +AVTF+DNHDTGSTQ WPFPS+
Sbjct: 267 AFDFTTKGELQAAVQGELWRMKDGNGKAPGMIGWLPEKAVTFIDNHDTGSTQNSWPFPSD 326
Query: 314 HIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSN 373
+M+GYAYIL HPG+P +FYDH +DW ++ +I L VR + +IH S +KIL A+ +
Sbjct: 327 KVMQGYAYILTHPGVPCIFYDHVFDW--NLKQEISTLAAVRSRNEIHPGSKLKILAAEGD 384
Query: 374 LYSAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAVWHK 413
+Y A+I DKV KIG G+ P+ ++ + G+ Y +W K
Sbjct: 385 VYVAMIDDKVITKIGTRYDVGNLIPS--DFHVVAHGNNYCIWEK 426
|
|
| UNIPROTKB|P27933 AMY1.3 "Alpha-amylase isozyme 3D" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
Identities = 177/404 (43%), Positives = 253/404 (62%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES K W+ L+ +V DI+K+G T VWLPP +HS AP+GY+P LY L+
Sbjct: 26 QVLFQGFNWESWKQQGGWYNMLKGQVDDIAKAGVTHVWLPPPSHSVAPQGYMPGRLYDLD 85
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG-IP---LSWDE 138
+S YG+ LK+L+ V+ +AD+VINHR + G Y ++G P L W
Sbjct: 86 ASKYGTAAELKSLIAAFHGKGVQCVADVVINHRCAEKKDARGVYCVFEGGTPDDRLDWGP 145
Query: 139 HAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
+ T + G G+ TG+ F P+IDH V++++ WL WL++ VGF +R DF
Sbjct: 146 GMICSDDTQYSDGTGHRDTGEGFGAAPDIDHLNPRVQRELTDWLNWLKSDVGFDGWRLDF 205
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDY-NQDSHRQRIINWIDGTGQLSA 253
A+GYS K Y+E +P F V E W+S +YN G NQD RQ ++NW++ G +
Sbjct: 206 AKGYSTDIAKMYVESCKPGFVVAEIWNSLSYNGDGKPAANQDQGRQELVNWVNAVGGPAM 265
Query: 254 AFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSN 313
FDFTTKG+LQ V+G+ WRLRD GK G++GW P +AVTF+DNHDTGSTQ WPFPS+
Sbjct: 266 TFDFTTKGLLQAGVQGELWRLRDGNGKAAGMIGWLPEKAVTFVDNHDTGSTQKLWPFPSD 325
Query: 314 HIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSN 373
+M+GYAYIL HPG+P +FYDH +DW ++ +I L +R + I++ S ++I+ A ++
Sbjct: 326 KVMQGYAYILTHPGVPCIFYDHMFDW--NLKQEITALAAIRERNGINAGSKLRIVVADAD 383
Query: 374 LYSAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAVWHK 413
Y A++ +KV +KIG G+ P+ T+ G Y+VW K
Sbjct: 384 AYVAVVDEKVMVKIGTRYDVGNAVPSDFHQTV--HGKDYSVWEK 425
|
|
| UNIPROTKB|P27939 AMY1.7 "Alpha-amylase isozyme 3C" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
Identities = 178/404 (44%), Positives = 248/404 (61%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES K W+ L V DI+ +G T VWLPP +HS AP+GY+P LY L+
Sbjct: 27 QVLFQGFNWESWKKQGGWYNFLHSHVDDIAATGVTHVWLPPPSHSVAPQGYMPGRLYDLD 86
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG-IP---LSWDE 138
+S YG+ L++L+ ++ +ADIVINHR + G Y ++G P L W
Sbjct: 87 ASKYGTGAELRSLIAAFHSKSIKCVADIVINHRCADYKDSRGIYCIFEGGTPDSRLDWGP 146
Query: 139 HAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
+ T + G G+ TG +F P+IDH V+ ++ WL WL++ VGF +R DF
Sbjct: 147 DMICSDDTQYSNGRGHRDTGADFGAAPDIDHLNTRVQTELSDWLNWLKSDVGFDGWRLDF 206
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWIDGTGQLSA 253
A+GYSA K Y++ P F V E W + Y+ +G +NQD RQ ++NW G ++
Sbjct: 207 AKGYSATVAKTYVDNTDPSFVVAEIWSNMRYDGNGEPSWNQDGDRQELVNWAQAVGGPAS 266
Query: 254 AFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSN 313
AFDFTTKG LQ AV+G+ WR++D GK PG++GW P +AVTF+DNHDTGSTQ WPFPS+
Sbjct: 267 AFDFTTKGELQAAVQGELWRMKDGNGKAPGMIGWLPEKAVTFIDNHDTGSTQNSWPFPSD 326
Query: 314 HIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSN 373
+M+GYAYIL HPG+P +FYDH +DW ++ +I L VR + IH S + IL A +
Sbjct: 327 KVMQGYAYILTHPGVPCIFYDHVFDW--NLKQEISTLAAVRSRNGIHPGSKLNILAADGD 384
Query: 374 LYSAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAVWHK 413
+Y A+I DKV KIG G+ P+ ++ + G+ Y VW K
Sbjct: 385 VYVAMIDDKVITKIGTRYDVGNLIPS--DFHVVAHGNNYCVWEK 426
|
|
| TAIR|locus:2117398 AMY1 "alpha-amylase-like" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
Identities = 188/406 (46%), Positives = 253/406 (62%)
Query: 27 ILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNS 84
+LFQ FNWES K + ++ +L + DI+ +G T +WLPP + S APEGYLP LY LNS
Sbjct: 27 LLFQSFNWESWKKEGGFYNSLHNSIDDIANAGITHLWLPPPSQSVAPEGYLPGKLYDLNS 86
Query: 85 S-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP----LSWDEH 139
S YGSE LK+L+ + Q ++A+ADIVINHR + Y ++G L WD
Sbjct: 87 SKYGSEAELKSLIKALNQKGIKALADIVINHRTAERKDDKCGYCYFEGGTSDDRLDWDPS 146
Query: 140 AVTSCTG-----GLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
V C G GN TG +F G P+IDH V+K++ W+ WL+ +GF +RFD+
Sbjct: 147 FV--CRNDPKFPGTGNLDTGGDFDGAPDIDHLNPRVQKELSEWMNWLKTEIGFHGWRFDY 204
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHG-LDYNQDSHRQRIINWID--GTGQL 251
RGY++ K Y++ P F+VGE WD Y G LDY+Q+ HR + WI+ G G L
Sbjct: 205 VRGYASSITKLYVQNTSPDFAVGEKWDDMKYGGDGKLDYDQNEHRSGLKQWIEEAGGGVL 264
Query: 252 SAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFP 311
+A FDFTTKGILQ AVKG+ WRL+D+QGKPPG++G P AVTF+DNHDT T W FP
Sbjct: 265 TA-FDFTTKGILQSAVKGELWRLKDSQGKPPGMIGIMPGNAVTFIDNHDTFRT---WVFP 320
Query: 312 SNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQ 371
S+ ++ GY YIL HPG P +FY+H+ +WG + I KL+ +R + I S SS+ I A+
Sbjct: 321 SDKVLLGYVYILTHPGTPCIFYNHYIEWG--LKESISKLVAIRNKNGIGSTSSVTIKAAE 378
Query: 372 SNLYSAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAVWHK 413
++LY A+I DKV MKIG G+ P+ + LA SG +AVW K
Sbjct: 379 ADLYLAMIDDKVIMKIGPKQDVGTLVPSN--FALAYSGLDFAVWEK 422
|
|
| UNIPROTKB|P26612 amyA "alpha-amylase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 151 (58.2 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 58/184 (31%), Positives = 80/184 (43%)
Query: 162 NIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIE-----GARPIFSV 216
NID H V ++I W RW+ FR D + A + KE+IE +P+F V
Sbjct: 204 NIDFRNHAVTEEIKYWARWVMEQTQCDGFRLDAVKHIPAWFYKEWIEHVQEVAPKPLFIV 263
Query: 217 GEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK-GQFWRLR 275
EYW SH +D Q I+ ++G L FD + EA + G+ + +
Sbjct: 264 AEYW------SHEVD-----KLQTYIDQVEGKTML---FDAPLQMKFHEASRMGRDYDM- 308
Query: 276 DAQGKPPGVMGWWPSRAVTFLDNHDTGSTQA-HWPFPSNHIMEGYAYILMHP-GIPSVFY 333
Q ++ P AVT + NHDT QA P YA IL+ G+PSVFY
Sbjct: 309 -TQIFTGTLVEADPFHAVTLVANHDTQPLQALEAPVEPWFKPLAYALILLRENGVPSVFY 367
Query: 334 DHFY 337
Y
Sbjct: 368 PDLY 371
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8LFG1 | AMY2_ARATH | 3, ., 2, ., 1, ., 1 | 0.8208 | 1.0 | 1.0 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| fgenesh4_pm.C_LG_II000069 | alpha-amylase (EC-3.2.1.1) (406 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 413 | |||
| PLN02361 | 401 | PLN02361, PLN02361, alpha-amylase | 0.0 | |
| cd11314 | 302 | cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase | 1e-162 | |
| PLN02784 | 894 | PLN02784, PLN02784, alpha-amylase | 1e-162 | |
| PLN00196 | 428 | PLN00196, PLN00196, alpha-amylase; Provisional | 1e-139 | |
| PRK09441 | 479 | PRK09441, PRK09441, cytoplasmic alpha-amylase; Rev | 8e-38 | |
| cd11318 | 391 | cd11318, AmyAc_bac_fung_AmyA, Alpha amylase cataly | 1e-35 | |
| pfam07821 | 63 | pfam07821, Alpha-amyl_C2, Alpha-amylase C-terminal | 1e-24 | |
| smart00810 | 61 | smart00810, Alpha-amyl_C2, Alpha-amylase C-termina | 2e-23 | |
| cd11319 | 375 | cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic d | 5e-15 | |
| cd00551 | 260 | cd00551, AmyAc_family, Alpha amylase catalytic dom | 5e-13 | |
| smart00642 | 166 | smart00642, Aamy, Alpha-amylase domain | 7e-12 | |
| pfam00128 | 314 | pfam00128, Alpha-amylase, Alpha amylase, catalytic | 1e-11 | |
| cd11315 | 352 | cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic | 2e-09 | |
| cd11320 | 389 | cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase | 3e-07 | |
| COG0366 | 505 | COG0366, AmyA, Glycosidases [Carbohydrate transpor | 2e-05 | |
| cd11339 | 344 | cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catal | 2e-04 | |
| cd11352 | 443 | cd11352, AmyAc_5, Alpha amylase catalytic domain f | 7e-04 | |
| cd11340 | 407 | cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catal | 7e-04 |
| >gnl|CDD|177990 PLN02361, PLN02361, alpha-amylase | Back alignment and domain information |
|---|
Score = 818 bits (2115), Expect = 0.0
Identities = 346/401 (86%), Positives = 374/401 (93%), Gaps = 2/401 (0%)
Query: 15 TDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGY 74
TD GAVIRNGREIL Q FNWES KHDWWRNLE KVPD++KSGFTS WLPP + S APEGY
Sbjct: 1 TDNGAVIRNGREILLQAFNWESHKHDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGY 60
Query: 75 LPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPL 134
LPQNLYSLNS+YGSEHLLK+LL KMKQ+ VRAMADIVINHRVGTTQGHGG YNRYDGIPL
Sbjct: 61 LPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDGIPL 120
Query: 135 SWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
WDEHAVTSCTGGLGN STGDNF+GVPNIDHTQHFVRKDII WL WLRN VGFQDFRFDF
Sbjct: 121 PWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDF 180
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHG--LDYNQDSHRQRIINWIDGTGQLS 252
A+GYSAK+VKEYIE A+P+FSVGEYWDSCNY+ LDYNQDSHRQRI+NWIDGTG LS
Sbjct: 181 AKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLS 240
Query: 253 AAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPS 312
AAFDFTTKGILQEAVKGQ+WRLRDAQGKPPGVMGWWPSRAVTF+DNHDTGSTQAHWPFPS
Sbjct: 241 AAFDFTTKGILQEAVKGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPS 300
Query: 313 NHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQS 372
+HIMEGYAYIL HPGIP+VFYDHFYDWG SIH+QIVKL+D+R++QDIHSRSSI+ILEAQS
Sbjct: 301 DHIMEGYAYILTHPGIPTVFYDHFYDWGGSIHDQIVKLIDIRKRQDIHSRSSIRILEAQS 360
Query: 373 NLYSAIIGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 413
NLYSAII +K+CMKIGDGSWCP+G+EWTLATSGH+YAVWHK
Sbjct: 361 NLYSAIIDEKLCMKIGDGSWCPSGREWTLATSGHRYAVWHK 401
|
Length = 401 |
| >gnl|CDD|200453 cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 457 bits (1179), Expect = e-162
Identities = 168/343 (48%), Positives = 225/343 (65%), Gaps = 45/343 (13%)
Query: 27 ILFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSFA--PEGYLPQNLYSLN 83
++ QGF W+S K WW +LE K P+++ +GFT++WLPP + S + GY P +LY LN
Sbjct: 1 VMLQGFYWDSPKDGTWWNHLESKAPELAAAGFTAIWLPPPSKSVSGSSMGYDPGDLYDLN 60
Query: 84 SSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTS 143
S YGSE L++L+ + ++ +ADIVINHR G D
Sbjct: 61 SRYGSEAELRSLIAALHAKGIKVIADIVINHRSG-----------PD------------- 96
Query: 144 CTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYV 203
TG++F G P++DHT V+ D+ AWL WL+N +GF +RFDF +GY+ YV
Sbjct: 97 ---------TGEDFGGAPDLDHTNPEVQNDLKAWLNWLKNDIGFDGWRFDFVKGYAPSYV 147
Query: 204 KEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGIL 263
KEY E P FSVGEYWD +Y NQD+HRQR+++WID TG SAAFDFTTK IL
Sbjct: 148 KEYNEATSPSFSVGEYWDGLSYE------NQDAHRQRLVDWIDATGGGSAAFDFTTKYIL 201
Query: 264 QEAVKG-QFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYI 322
QEAV ++WRLRD QGKPPG++GWWP +AVTF+DNHDTGSTQ HWPFP++++++GYAYI
Sbjct: 202 QEAVNNNEYWRLRDGQGKPPGLIGWWPQKAVTFVDNHDTGSTQGHWPFPTDNVLQGYAYI 261
Query: 323 LMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSI 365
L HPG P VF+DH+YDWG + ++I L+ R++ I S S +
Sbjct: 262 LTHPGTPCVFWDHYYDWG--LKDEIKALIAARKRAGIGSTSKV 302
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes AmyA from bacteria, archaea, water fleas, and plants. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 302 |
| >gnl|CDD|215419 PLN02784, PLN02784, alpha-amylase | Back alignment and domain information |
|---|
Score = 477 bits (1230), Expect = e-162
Identities = 202/398 (50%), Positives = 267/398 (67%), Gaps = 11/398 (2%)
Query: 23 NGREILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYS 81
+G EIL QGFNWES K W+ L K ++S GFT VWLPP T S +PEGY+P++LY+
Sbjct: 500 SGFEILCQGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYN 559
Query: 82 LNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAV 141
LNS YG+ LK L+ + ++ + D V+NHR Q G +N + G L+WD+ AV
Sbjct: 560 LNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGG-RLNWDDRAV 618
Query: 142 TSCT---GGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 198
+ G GN S+GDNFH PNIDH+Q FVRKD+ WL W+R VG+ +R DF RG+
Sbjct: 619 VADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGF 678
Query: 199 SAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFT 258
YVK+Y+E + P F+VGEYWDS +Y +DYNQD+HRQRI++WI+ T + AFD T
Sbjct: 679 WGGYVKDYMEASEPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINATNGTAGAFDVT 738
Query: 259 TKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIME 317
TKGIL A+ + ++WRL D +GKPPGV+GWWPSRAVTF++NHDTGSTQ HW FP M+
Sbjct: 739 TKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEGKEMQ 798
Query: 318 GYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSA 377
GYAYIL HPG P+VFYDH + H +I L+ +R +Q IH RS +KI +A+ ++Y+A
Sbjct: 799 GYAYILTHPGTPAVFYDHIF---SHYHPEIASLISLRNRQKIHCRSEVKITKAERDVYAA 855
Query: 378 IIGDKVCMKIGDGSWCP--AGKEWTLATSGHKYAVWHK 413
II +KV MKIG G + P + W++A G Y VW
Sbjct: 856 IIDEKVAMKIGPGHYEPPNGPQNWSVALEGQDYKVWET 893
|
Length = 894 |
| >gnl|CDD|165762 PLN00196, PLN00196, alpha-amylase; Provisional | Back alignment and domain information |
|---|
Score = 404 bits (1039), Expect = e-139
Identities = 190/407 (46%), Positives = 259/407 (63%), Gaps = 23/407 (5%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES K + W+ L KV DI+ +G T VWLPP +HS + +GY+P LY L+
Sbjct: 25 QVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLD 84
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG-IP---LSWDE 138
+S YG+E LK+L+ V+ +ADIVINHR + G Y ++G P L W
Sbjct: 85 ASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGP 144
Query: 139 HAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
H + T + G GN TG +F P+IDH V++++I WL WL++ +GF +R DF
Sbjct: 145 HMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDF 204
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWID---GTGQ 250
A+GYSA+ K YI+G P F+V E W S Y G +Y+Q++HRQ ++NW+D G
Sbjct: 205 AKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEYDQNAHRQELVNWVDRVGGAAS 264
Query: 251 LSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPF 310
+ FDFTTKGIL AV+G+ WRLR A GK PGV+GWWP++AVTF+DNHDTGSTQ WPF
Sbjct: 265 PATVFDFTTKGILNVAVEGELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQHMWPF 324
Query: 311 PSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEA 370
PS+ +M+GYAYIL HPG P +FYDHF+DWG + +I L+ +R + I S ++I+EA
Sbjct: 325 PSDKVMQGYAYILTHPGNPCIFYDHFFDWG--LKEEIAALVSIRNRNGITPTSELRIMEA 382
Query: 371 QSNLYSAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAVWHK 413
++LY A I KV +KIG P G + + G+ YAVW K
Sbjct: 383 DADLYLAEIDGKVIVKIGSRYDVSHLIPEG--FQVVAHGNGYAVWEK 427
|
Length = 428 |
| >gnl|CDD|236518 PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 8e-38
Identities = 97/416 (23%), Positives = 155/416 (37%), Gaps = 105/416 (25%)
Query: 23 NGREILFQGFNWES-CKHDWWRNLERKVPDISKSGFTSVWLPPA---THSFAPEGYLPQN 78
+ Q F W W L + P+++++G T+VWLPPA T GY +
Sbjct: 1 MRNGTMMQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYD 60
Query: 79 LYSLN---------SSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG------------ 117
L+ L + YG++ L + + ++ ++ AD+V+NH+ G
Sbjct: 61 LFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEV 120
Query: 118 ---------------------TTQGHGGKY-----NRYDGIPLSWDEHAVTSCTGGLGNG 151
T G GGKY + Y +DE+ +G
Sbjct: 121 DPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDEN--PDESGIFKIV 178
Query: 152 STGDNF-HGV------------PNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 198
G + V +ID VR+++ W +W T GF FR D +
Sbjct: 179 GDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHI 238
Query: 199 SAKYVKEYIE-----GARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSA 253
A ++KE+IE + +F VGEYW + D + ++++ +
Sbjct: 239 DAWFIKEWIEHVREVAGKDLFIVGEYWSH----------DVDK----LQDYLEQVEGKTD 284
Query: 254 AFDFTTKGILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDT------GSTQA 306
FD EA K G+ + +R+ ++ P AVTF+DNHDT S
Sbjct: 285 LFDVPLHYNFHEASKQGRDYDMRNIFD--GTLVEADPFHAVTFVDNHDTQPGQALESPVE 342
Query: 307 HWPFPSNHIMEGYAYILMHP-GIPSVFYDHFY-----DWGDSIHNQIVKLMDVRRQ 356
W P YA IL+ G P VFY +Y ++ KL+ R+
Sbjct: 343 PWFKPL-----AYALILLREEGYPCVFYGDYYGASGYYIDMPFKEKLDKLLLARKN 393
|
Length = 479 |
| >gnl|CDD|200457 cd11318, AmyAc_bac_fung_AmyA, Alpha amylase catalytic domain found in bacterial and fungal Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 1e-35
Identities = 99/414 (23%), Positives = 159/414 (38%), Gaps = 107/414 (25%)
Query: 26 EILFQGFNWES-CKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPE---GYLPQNLYS 81
+ Q F W W+ L P++++ G T+VWLPPA + GY +LY
Sbjct: 2 GTMMQYFEWYLPADGQHWKRLAEDAPELAELGITAVWLPPAYKGASGTEDVGYDVYDLYD 61
Query: 82 LN---------SSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG--------------- 117
L + YG++ L + + ++ ++ AD V+NH+ G
Sbjct: 62 LGEFDQKGTVRTKYGTKEELLEAIKALHENGIQVYADAVLNHKAGADETETVKAVEVDPN 121
Query: 118 ------------------TTQGHGGKYNRY-------DGIPLSWD----EHAVTSCTGGL 148
T G GGKY+ + G+ +D + +
Sbjct: 122 DRNKEISEPYEIEAWTKFTFPGRGGKYSDFKWNWQHFSGV--DYDQKTKKKGIFKINFEG 179
Query: 149 GNGSTG-DNFHG------VPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAK 201
D+ +G +ID++ VR+++ W +W NT G FR D + SA
Sbjct: 180 KGWDEDVDDENGNYDYLMGADIDYSNPEVREELKRWGKWYINTTGLDGFRLDAVKHISAS 239
Query: 202 YVKEYI-----EGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFD 256
++K++I E + +F+VGEYW + D + + +++D T + FD
Sbjct: 240 FIKDWIDHLRRETGKDLFAVGEYW------------SGDL--EALEDYLDATDGKMSLFD 285
Query: 257 FTTKGILQEA-VKGQFWRLRD-AQGKPPGVMGWWPSRAVTFLDNHDT------GSTQAHW 308
EA G + LR G ++ P +AVTF+DNHDT S W
Sbjct: 286 VPLHYNFHEASKSGGNYDLRKIFDGT---LVQSRPDKAVTFVDNHDTQPGQSLESWVEPW 342
Query: 309 PFPSNHIMEGYAYILMHP-GIPSVFYDHFY-----DWGDSIHNQIVKLMDVRRQ 356
P YA IL+ G P VFY +Y D + KL+ R+
Sbjct: 343 FKPL-----AYALILLRKDGYPCVFYGDYYGIPGEDPIPPKKELLDKLLKARKL 391
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes bacterial and fungal proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 391 |
| >gnl|CDD|219596 pfam07821, Alpha-amyl_C2, Alpha-amylase C-terminal beta-sheet domain | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 1e-24
Identities = 32/63 (50%), Positives = 45/63 (71%), Gaps = 4/63 (6%)
Query: 355 RQQDIHSRSSIKILEAQSNLYSAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAV 410
++ IHSRS+++IL A ++LY+AII KV +KIG G+W P+G+ W LA SG+ YAV
Sbjct: 1 KRNGIHSRSAVRILAADADLYAAIIDGKVIVKIGPRYDVGNWIPSGRGWKLAASGNDYAV 60
Query: 411 WHK 413
W K
Sbjct: 61 WEK 63
|
This domain is organised as a five-stranded anti-parallel beta-sheet. It is the probable result of a decay of the common-fold. Length = 63 |
| >gnl|CDD|129046 smart00810, Alpha-amyl_C2, Alpha-amylase C-terminal beta-sheet domain | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 2e-23
Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 6/63 (9%)
Query: 355 RQQDIHSRSSIKILEAQSNLYSAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAV 410
++ IHSRSS+KIL A+++LY A+I +KV MKIG G+ P+G + LA SG+ YAV
Sbjct: 1 KRNGIHSRSSLKILAAEADLYVAMIDEKVIMKIGPRYDVGNLIPSG--FHLAASGNDYAV 58
Query: 411 WHK 413
W K
Sbjct: 59 WEK 61
|
This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C-terminus. This domain is organised as a five-stranded anti-parallel beta-sheet. Length = 61 |
| >gnl|CDD|200458 cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic domain found in eukaryotic Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 5e-15
Identities = 78/334 (23%), Positives = 125/334 (37%), Gaps = 88/334 (26%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHS--------FAPEGYLPQNLYSLNSSYGSEHLLK 93
W+ + K+ I GF ++W+ P + A GY Q+LYSLN +G+ LK
Sbjct: 42 WKGIINKLDYIQGMGFDAIWISPIVKNIEGNTAYGEAYHGYWAQDLYSLNPHFGTADDLK 101
Query: 94 AL---LHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLS-----------WDEH 139
AL LHK + M D+V+NH G Y+ + +P + D +
Sbjct: 102 ALSKALHKR---GMYLMVDVVVNHMASAGPGSDVDYSSF--VPFNDSSYYHPYCWITDYN 156
Query: 140 AVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS 199
TS + GD+ +P+++ FV + W++ L + R D A+
Sbjct: 157 NQTSVE----DCWLGDDVVALPDLNTENPFVVSTLNDWIKNLVSNYSIDGLRIDTAKHVR 212
Query: 200 AKYVKEYIEGARPIFSVGEYWDS-----CNYNSHGLDYNQDSHRQRIINWIDGTGQLSAA 254
+ ++E A +F++GE +D C Y L
Sbjct: 213 KDFWPGFVEAAG-VFAIGEVFDGDPNYVCPY----------------------QNYLDGV 249
Query: 255 FDFTTKGILQEA---VKGQFWRLRD------AQGKPPGVMGWWPSRAVTFLDNHDTGSTQ 305
++ L +A KG L D + K P ++G TFL+NHD
Sbjct: 250 LNYPLYYPLVDAFQSTKGSMSALVDTINSVQSSCKDPTLLG-------TFLENHDN---- 298
Query: 306 AHWP-FPSNH-----IMEGYAYILMHPGIPSVFY 333
P F S A+ L+ GIP ++Y
Sbjct: 299 ---PRFLSYTSDQALAKNALAFTLLSDGIPIIYY 329
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes eukaryotic alpha-amylases including proteins from fungi, sponges, and protozoans. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 375 |
| >gnl|CDD|200451 cd00551, AmyAc_family, Alpha amylase catalytic domain family | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 5e-13
Identities = 50/302 (16%), Positives = 93/302 (30%), Gaps = 80/302 (26%)
Query: 41 WWRNLERKVPDISKSGFTSVWLPPA----THSFAPEGYLPQNLYSLNSSYGSEHLLKALL 96
+ + K+ + G T++WL P + + + Y ++ G+E K L+
Sbjct: 23 DLKGIIDKLDYLKDLGVTAIWLTPIFESPEYDGYDKDDGYLDYYEIDPRLGTEEDFKELV 82
Query: 97 HKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDN 156
+ ++ + D+V NH + R+ W + V D
Sbjct: 83 KAAHKRGIKVILDLVFNHDIL----------RF------WLDEGV-------------DG 113
Query: 157 FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSV 216
F +D +H + + + +LR +R +
Sbjct: 114 FR----LDAAKHVPKPEPVEFLREIRKDAKLAKPDT---------------------LLL 148
Query: 217 GEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRD 276
GE W + + L + FDF L++A+KG
Sbjct: 149 GEAWGG------PDELLAKAG---------FDDGLDSVFDFPLLEALRDALKGGEG--AL 191
Query: 277 AQGKPPGVMGWWPSRAVTFLDNHDT-----GSTQAHWPFPSNHIMEGYAYILMHPGIPSV 331
A ++ + V FL NHDT + + A +L PG P +
Sbjct: 192 AILAALLLLNPEGALLVNFLGNHDTFRLADLVSYKIVELRKARLKLALALLLTLPGTPMI 251
Query: 332 FY 333
+Y
Sbjct: 252 YY 253
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 260 |
| >gnl|CDD|214758 smart00642, Aamy, Alpha-amylase domain | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 7e-12
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 26 EILFQGFNWESCK-HDWWRNLERKVPDISKSGFTSVWLPPATHSFAP----EGYLPQNLY 80
+I F + + + K+ + G T++WL P S GY +
Sbjct: 1 QIYPDRFADGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYK 60
Query: 81 SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115
++ +G+ K L+ ++ + D+VINH
Sbjct: 61 QIDPRFGTMEDFKELVDAAHARGIKVILDVVINHT 95
|
Length = 166 |
| >gnl|CDD|215737 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 65/314 (20%), Positives = 114/314 (36%), Gaps = 36/314 (11%)
Query: 42 WRNLERKVPDISKSGFTSVWL-PPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100
+ + K+ + G T++WL P + GY + Y ++ +G+ K L+ K
Sbjct: 3 LQGIIDKLDYLKDLGVTAIWLSPIFDSPQSYHGYDITDYYKIDPHFGTMDDFKELIDKAH 62
Query: 101 QHKVRAMADIVINHRVGTTQGHGG--KYNRYDGIPLS----WDEHAVTSCTGGLGNGS-- 152
+ ++ + D+V NH T+ H + P W ++ + GS
Sbjct: 63 ERGIKVILDLVPNH---TSDEHAWFQESRSSKDNPYRDYYIWRIYSPPNNWISYFGGSAW 119
Query: 153 -----TGDNFH-GVPNIDHTQHFVRKDIIAWL--RWLRNTVGFQDFRFDFARGYSAKYVK 204
F +P+++ VRK++ W+ WL G FR D + S +
Sbjct: 120 SDDEDGQYLFLVSLPDLNTENPEVRKELKDWVVKFWLDK--GIDGFRIDAVKHISKGFWH 177
Query: 205 EYI----EGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWID-GTGQLSAAFDFTT 259
E+ E +F+VGE W + ++ YN + N+ GQ
Sbjct: 178 EFTQEMNEYKPDVFTVGEVWGGSDEDARVYAYNSYMELESGFNFPHFDLGQNVFIPFRLN 237
Query: 260 KGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGY 319
++ + + Q P VTFL NHD + + S I
Sbjct: 238 PFSAKDLKE----MISSWQSDYPD-----VDWLVTFLGNHDQPRFLSRFGDDSAKIKLAL 288
Query: 320 AYILMHPGIPSVFY 333
A +L PG P ++Y
Sbjct: 289 ALLLTLPGTPYIYY 302
|
Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain. Length = 314 |
| >gnl|CDD|200454 cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 65/336 (19%), Positives = 120/336 (35%), Gaps = 71/336 (21%)
Query: 39 HDW-WR--NLERKVPDISKSGFTSVWLPPATHSFAPEG--------YLPQNLYSLNSSYG 87
H + W ++ +P+I+ +G+T++ P S Y P + N+ G
Sbjct: 6 HAFDWSFNTIKENLPEIAAAGYTAIQTSPPQKSKEGGNEGGNWWYRYQPTDYRIGNNQLG 65
Query: 88 SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRY---DGIPLSWDEHAVTSC 144
+E KAL ++ ++ + D+V NH + + I L E
Sbjct: 66 TEDDFKALCAAAHKYGIKIIVDVVFNH---MANEGSAIEDLWYPSADIELFSPED----- 117
Query: 145 TGGLGNGS--------TGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196
G G S T G+P+++ V++ A+L+ L +G FRFD
Sbjct: 118 FHGNGGISNWNDRWQVTQGRLGGLPDLNTENPAVQQQQKAYLKALVA-LGVDGFRFD--- 173
Query: 197 GYSAKYVKEYIEGA---------------RPIFSVGEYWDSCNYNSHGLDYNQDSHRQRI 241
+AK+++ E + +F GE DY
Sbjct: 174 --AAKHIELPDEPSKASDFWTNILNNLDKDGLFIYGEVLQDGGSRDS--DYAS------- 222
Query: 242 INWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDT 301
++ G ++A+ F L+ A+K F G RAVT++++HDT
Sbjct: 223 --YLSLGGVTASAYGFP----LRGALKNAFLFGGSLDPASYG-QALPSDRAVTWVESHDT 275
Query: 302 ---GSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYD 334
++ + + +AY+ G +F+
Sbjct: 276 YNNDGFESTGLDDEDERL-AWAYLAARDGGTPLFFS 310
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Firmicutes, Proteobacteria, Actinobacteria, and Cyanobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 352 |
| >gnl|CDD|200459 cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase catalytic domain found in maltogenic amylases, cyclodextrin glycosyltransferase, and related proteins | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 58/318 (18%), Positives = 114/318 (35%), Gaps = 44/318 (13%)
Query: 42 WRNLERKVPDISKSGFTSVWL-PPATHSFAP---------EGYLPQNLYSLNSSYGSEHL 91
W+ + K+P + G T++W+ PP + +P GY ++ N +G+
Sbjct: 46 WQGIIDKLPYLKDLGVTAIWISPPVENINSPIEGGGNTGYHGYWARDFKRTNEHFGTWED 105
Query: 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGHGGK-YN------RYDGIPLSWDEHAVTSC 144
L+ + ++ + D V NH G Y+ Y W H
Sbjct: 106 FDELVDAAHANGIKVIIDFVPNHSSPADYAEDGALYDNGTLVGDYPNDDNGWFHHN---- 161
Query: 145 TGGLGNGSTGD-----NFHGVPNIDHTQHFVRKDII-AWLRWLRNTVGFQDFRFDFARGY 198
GG+ + S + N + +++ + +V + + A WL G R D +
Sbjct: 162 -GGIDDWSDREQVRYKNLFDLADLNQSNPWVDQYLKDAIKFWL--DHGIDGIRVDAVKHM 218
Query: 199 SAKYVKEY---IEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAF 255
+ K + I +P+F+ GE++ + DY + ++ G L
Sbjct: 219 PPGWQKSFADAIYSKKPVFTFGEWFLGSPDPGYE-DYVKFANN-------SGMSLLDFPL 270
Query: 256 DFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHI 315
+ + + + L + + + VTF+DNHD +
Sbjct: 271 NQAIRDVFAGFTAT-MYDLDAMLQQTSSDYNY-ENDLVTFIDNHDMPRFLT-LNNNDKRL 327
Query: 316 MEGYAYILMHPGIPSVFY 333
+ A++L GIP ++Y
Sbjct: 328 HQALAFLLTSRGIPVIYY 345
|
Enzymes such as amylases, cyclomaltodextrinase (CDase), and cyclodextrin glycosyltransferase (CGTase) degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs), consisting of six, seven, or eight glucose residues, respectively. CGTases are characterized depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The maltogenic alpha-amylase from Bacillus is a five-domain structure, unlike most alpha-amylases, but similar to that of cyclodextrin glycosyltransferase. In addition to the A, B, and C domains, they have a domain D and a starch-binding domain E. Maltogenic amylase is an endo-acting amylase that has activity on cyclodextrins, terminally modified linear maltodextrins, and amylose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 389 |
| >gnl|CDD|223443 COG0366, AmyA, Glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100
+ + K+ + + G ++WL P S A GY + ++ +G+E K L+ +
Sbjct: 28 LKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAH 87
Query: 101 QHKVRAMADIVINH 114
+ ++ + D+V NH
Sbjct: 88 KRGIKVILDLVFNH 101
|
Length = 505 |
| >gnl|CDD|200478 cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 57/313 (18%), Positives = 93/313 (29%), Gaps = 86/313 (27%)
Query: 42 WRNLERKVPDISKSGFTSVWLPP-------ATHSFAPEGYLPQNLYSLNSSYGSEHLLKA 94
++ L K+ I GFT++W+ P S GY + Y ++ G++ L+
Sbjct: 44 FKGLIDKLDYIKDLGFTAIWITPVVKNRSVQAGSAGYHGYWGYDFYRIDPHLGTDADLQD 103
Query: 95 LLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTG 154
L+ ++ + DIV+NH TG
Sbjct: 104 LIDAAHARGIKVILDIVVNH--------------------------------------TG 125
Query: 155 DNFHGVPNIDHTQHFVRKDIIAW-LRWLRNTVGFQDFRFDFARGYSAKYVKEYI------ 207
D ++ V +I W+ G FR D + ++ +E+
Sbjct: 126 D-------LNTENPEVVDYLIDAYKWWI--DTGVDGFRIDTVKHVPREFWQEFAPAIRQA 176
Query: 208 EGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGIL---Q 264
G F GE +D S+ G L +
Sbjct: 177 AGKPDFFMFGEVYDG-----------DPSYIAPYTTTAGGDSVLDFPLYGAIRDAFAGGG 225
Query: 265 EAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG----STQAHWPFPSNHIMEGYA 320
Q L D + VTFLDNHD G S + + + A
Sbjct: 226 SGDLLQDLFLSDDLYNDATEL-------VTFLDNHDMGRFLSSLKDGSADGTARLALALA 278
Query: 321 YILMHPGIPSVFY 333
+ GIP ++Y
Sbjct: 279 LLFTSRGIPCIYY 291
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 344 |
| >gnl|CDD|200489 cd11352, AmyAc_5, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 65/355 (18%), Positives = 99/355 (27%), Gaps = 95/355 (26%)
Query: 52 ISKSGFTSVWLPPA----THSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107
+ + G T++WL P GY QN ++ +G+ L+ L+ + +
Sbjct: 59 LKRLGVTALWLSPVFKQRPELETYHGYGIQNFLDVDPRFGTREDLRDLVDAAHARGIYVI 118
Query: 108 ADIVINH------------RVGTTQGHGGKYNRYDGIPLS----------WDEHAV---- 141
DI++NH + + G N G + A+
Sbjct: 119 LDIILNHSGDVFSYDDDRPYSSSPGYYRGFPNYPPGGWFIGGDQDALPEWRPDDAIWPAE 178
Query: 142 ---TSCTGGLGNGSTGDN--------FHGVPNIDHTQHFVRKDIIAWL-----RWLRNTV 185
G D F + + + + L W+
Sbjct: 179 LQNLEYYTRKGRIRNWDGYPEYKEGDFFSLKDFRTGSGSIPSAALDILARVYQYWIAYA- 237
Query: 186 GFQD---FRFD--------FARGYSAKYVKEYIE--GARPIFSVGEYWDSCNYNSHGLDY 232
D FR D AR Y +KE+ + G F GE
Sbjct: 238 ---DIDGFRIDTVKHMEPGAAR-YFCNAIKEFAQSIGKDNFFLFGEITGG--------RE 285
Query: 233 NQDSHRQRIINWIDGTGQLSAAFDFT-TKGILQEAVKG--------QFWRLRDAQGKPPG 283
+D TG L AA D L+ KG Q + G G
Sbjct: 286 AAAYED------LDVTG-LDAALDIPEIPFKLENVAKGLAPPAEYFQLFENSKLVGM--G 336
Query: 284 VMGWWPSRAVTFLDNHDTGSTQ-AHWPFPSN----HIMEGYAYILMHPGIPSVFY 333
W+ VTFLD+HD + A L GIP ++Y
Sbjct: 337 SHRWYGKFHVTFLDDHDQVGRFYKKRRAADAAGDAQLAAALALNLFTLGIPCIYY 391
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 443 |
| >gnl|CDD|200479 cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 69/326 (21%), Positives = 115/326 (35%), Gaps = 82/326 (25%)
Query: 56 GFTSVWLPPATHSFAPE----GYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111
G T++WL P + P GY + Y ++ +GS K L+ K ++ + D+V
Sbjct: 58 GVTAIWLTPLLENDMPSYSYHGYAATDFYRIDPRFGSNEDYKELVSKAHARGMKLIMDMV 117
Query: 112 INHRVGTTQGH--------------GGKYNR--YDGIPLSWDEHAVTSCTGGLGNGSTGD 155
NH G+ H +Y + + L D +A + +G
Sbjct: 118 PNH-CGS--EHWWMKDLPTKDWINQTPEYTQTNHRRTALQ-DPYASQADRKLFLDGW--- 170
Query: 156 NF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFD--------FARGYSAKYVKEY 206
F +P+++ V + +I W G R D F ++ ++EY
Sbjct: 171 -FVPTMPDLNQRNPLVARYLIQNSIWWIEYAGLDGIRVDTYPYSDKDFMSEWTKAIMEEY 229
Query: 207 IEGARPIFS-VGEYWDSCNYNSHGLDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQ 264
P F+ VGE W + ++ Q+ DG L + DF + L+
Sbjct: 230 -----PNFNIVGEEWSG--------NPAIVAYWQKGKKNPDGYDSHLPSVMDFPLQDALR 276
Query: 265 EAVKGQFW------RLRDAQGK----PPGVMGWWPSRAVTFLDNHDT-------GSTQAH 307
+A+ + RL + P P+ V FLDNHDT G
Sbjct: 277 DALNEEEGWDTGLNRLYETLANDFLYPD------PNNLVIFLDNHDTSRFYSQVGEDLDK 330
Query: 308 WPFPSNHIMEGYAYILMHPGIPSVFY 333
+ A +L GIP ++Y
Sbjct: 331 FKL-------ALALLLTTRGIPQLYY 349
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 407 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 413 | |||
| PLN02361 | 401 | alpha-amylase | 100.0 | |
| PLN00196 | 428 | alpha-amylase; Provisional | 100.0 | |
| PLN02784 | 894 | alpha-amylase | 100.0 | |
| PRK09441 | 479 | cytoplasmic alpha-amylase; Reviewed | 100.0 | |
| PRK10785 | 598 | maltodextrin glucosidase; Provisional | 100.0 | |
| PRK09505 | 683 | malS alpha-amylase; Reviewed | 100.0 | |
| TIGR02456 | 539 | treS_nterm trehalose synthase. Trehalose synthase | 100.0 | |
| TIGR02403 | 543 | trehalose_treC alpha,alpha-phosphotrehalase. Treha | 100.0 | |
| PRK10933 | 551 | trehalose-6-phosphate hydrolase; Provisional | 100.0 | |
| TIGR02402 | 542 | trehalose_TreZ malto-oligosyltrehalose trehalohydr | 100.0 | |
| TIGR02104 | 605 | pulA_typeI pullulanase, type I. Pullulan is an unu | 100.0 | |
| PRK12313 | 633 | glycogen branching enzyme; Provisional | 100.0 | |
| TIGR01515 | 613 | branching_enzym alpha-1,4-glucan:alpha-1,4-glucan | 100.0 | |
| PRK05402 | 726 | glycogen branching enzyme; Provisional | 100.0 | |
| PF00128 | 316 | Alpha-amylase: Alpha amylase, catalytic domain; In | 100.0 | |
| TIGR02100 | 688 | glgX_debranch glycogen debranching enzyme GlgX. Th | 100.0 | |
| PRK14706 | 639 | glycogen branching enzyme; Provisional | 100.0 | |
| PRK03705 | 658 | glycogen debranching enzyme; Provisional | 100.0 | |
| PRK12568 | 730 | glycogen branching enzyme; Provisional | 100.0 | |
| PRK14510 | 1221 | putative bifunctional 4-alpha-glucanotransferase/g | 100.0 | |
| PLN02960 | 897 | alpha-amylase | 100.0 | |
| TIGR02102 | 1111 | pullulan_Gpos pullulanase, extracellular, Gram-pos | 100.0 | |
| PRK14705 | 1224 | glycogen branching enzyme; Provisional | 100.0 | |
| PRK13840 | 495 | sucrose phosphorylase; Provisional | 100.0 | |
| TIGR03852 | 470 | sucrose_gtfA sucrose phosphorylase. In the forward | 100.0 | |
| PLN02447 | 758 | 1,4-alpha-glucan-branching enzyme | 100.0 | |
| COG0366 | 505 | AmyA Glycosidases [Carbohydrate transport and meta | 100.0 | |
| TIGR02103 | 898 | pullul_strch alpha-1,6-glucosidases, pullulanase-t | 100.0 | |
| COG0296 | 628 | GlgB 1,4-alpha-glucan branching enzyme [Carbohydra | 100.0 | |
| TIGR02455 | 688 | TreS_stutzeri trehalose synthase, Pseudomonas stut | 100.0 | |
| PLN02877 | 970 | alpha-amylase/limit dextrinase | 100.0 | |
| KOG0471 | 545 | consensus Alpha-amylase [Carbohydrate transport an | 100.0 | |
| COG1523 | 697 | PulA Type II secretory pathway, pullulanase PulA a | 100.0 | |
| KOG2212 | 504 | consensus Alpha-amylase [Carbohydrate transport an | 100.0 | |
| TIGR02401 | 825 | trehalose_TreY malto-oligosyltrehalose synthase. T | 100.0 | |
| PLN03244 | 872 | alpha-amylase; Provisional | 100.0 | |
| PRK14511 | 879 | maltooligosyl trehalose synthase; Provisional | 100.0 | |
| KOG0470 | 757 | consensus 1,4-alpha-glucan branching enzyme/starch | 99.97 | |
| smart00642 | 166 | Aamy Alpha-amylase domain. | 99.94 | |
| PRK14507 | 1693 | putative bifunctional 4-alpha-glucanotransferase/m | 99.87 | |
| COG3280 | 889 | TreY Maltooligosyl trehalose synthase [Carbohydrat | 99.8 | |
| TIGR01531 | 1464 | glyc_debranch glycogen debranching enzymye. glycog | 99.79 | |
| PF14872 | 811 | GHL5: Hypothetical glycoside hydrolase 5 | 99.33 | |
| PF02324 | 809 | Glyco_hydro_70: Glycosyl hydrolase family 70; Inte | 99.16 | |
| PF14701 | 423 | hDGE_amylase: glucanotransferase domain of human g | 98.92 | |
| KOG3625 | 1521 | consensus Alpha amylase [Carbohydrate transport an | 98.66 | |
| PF02324 | 809 | Glyco_hydro_70: Glycosyl hydrolase family 70; Inte | 98.58 | |
| PF02638 | 311 | DUF187: Glycosyl hydrolase like GH101; InterPro: I | 98.58 | |
| PF14871 | 132 | GHL6: Hypothetical glycosyl hydrolase 6 | 98.52 | |
| PRK14508 | 497 | 4-alpha-glucanotransferase; Provisional | 97.97 | |
| PF02065 | 394 | Melibiase: Melibiase; InterPro: IPR000111 O-Glycos | 97.87 | |
| COG1649 | 418 | Uncharacterized protein conserved in bacteria [Fun | 97.84 | |
| PF07821 | 59 | Alpha-amyl_C2: Alpha-amylase C-terminal beta-sheet | 97.8 | |
| PLN02635 | 538 | disproportionating enzyme | 97.8 | |
| PF11941 | 89 | DUF3459: Domain of unknown function (DUF3459); Int | 97.69 | |
| cd06597 | 340 | GH31_transferase_CtsY CtsY (cyclic tetrasaccharide | 97.57 | |
| cd06593 | 308 | GH31_xylosidase_YicI YicI alpha-xylosidase is a gl | 97.48 | |
| cd06592 | 303 | GH31_glucosidase_KIAA1161 KIAA1161 is an uncharact | 97.27 | |
| cd06594 | 317 | GH31_glucosidase_YihQ YihQ is a bacterial alpha-gl | 97.19 | |
| PF13199 | 559 | Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: | 97.15 | |
| smart00810 | 61 | Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet | 97.14 | |
| PF13200 | 316 | DUF4015: Putative glycosyl hydrolase domain | 96.73 | |
| PF14488 | 166 | DUF4434: Domain of unknown function (DUF4434) | 96.64 | |
| cd06599 | 317 | GH31_glycosidase_Aec37 Glycosyl hydrolase family 3 | 96.62 | |
| cd06600 | 317 | GH31_MGAM-like This family includes the following | 95.99 | |
| PRK14582 | 671 | pgaB outer membrane N-deacetylase; Provisional | 95.98 | |
| PF01055 | 441 | Glyco_hydro_31: Glycosyl hydrolases family 31 ; In | 95.88 | |
| cd06591 | 319 | GH31_xylosidase_XylS XylS is a glycosyl hydrolase | 95.61 | |
| PF05913 | 357 | DUF871: Bacterial protein of unknown function (DUF | 95.52 | |
| COG3589 | 360 | Uncharacterized conserved protein [Function unknow | 95.46 | |
| PF00150 | 281 | Cellulase: Cellulase (glycosyl hydrolase family 5) | 95.38 | |
| PRK10426 | 635 | alpha-glucosidase; Provisional | 94.95 | |
| cd06604 | 339 | GH31_glucosidase_II_MalA Alpha-glucosidase II (alp | 94.84 | |
| cd06602 | 339 | GH31_MGAM_SI_GAA This family includes the followin | 94.78 | |
| PF02446 | 496 | Glyco_hydro_77: 4-alpha-glucanotransferase; InterP | 94.7 | |
| TIGR00217 | 513 | malQ 4-alpha-glucanotransferase. This enzyme is kn | 94.59 | |
| cd06542 | 255 | GH18_EndoS-like Endo-beta-N-acetylglucosaminidases | 94.48 | |
| cd06598 | 317 | GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide | 94.21 | |
| PRK10658 | 665 | putative alpha-glucosidase; Provisional | 94.17 | |
| COG3280 | 889 | TreY Maltooligosyl trehalose synthase [Carbohydrat | 94.14 | |
| PF07745 | 332 | Glyco_hydro_53: Glycosyl hydrolase family 53; Inte | 93.54 | |
| cd06562 | 348 | GH20_HexA_HexB-like Beta-N-acetylhexosaminidases c | 93.38 | |
| KOG1065 | 805 | consensus Maltase glucoamylase and related hydrola | 93.37 | |
| PRK11052 | 695 | malQ 4-alpha-glucanotransferase; Provisional | 93.26 | |
| COG1640 | 520 | MalQ 4-alpha-glucanotransferase [Carbohydrate tran | 92.86 | |
| cd06589 | 265 | GH31 The enzymes of glycosyl hydrolase family 31 ( | 92.79 | |
| PLN02950 | 909 | 4-alpha-glucanotransferase | 92.53 | |
| cd06595 | 292 | GH31_xylosidase_XylS-like This family represents a | 92.19 | |
| PLN03236 | 745 | 4-alpha-glucanotransferase; Provisional | 91.95 | |
| smart00632 | 81 | Aamy_C Aamy_C domain. | 91.92 | |
| cd06570 | 311 | GH20_chitobiase-like_1 A functionally uncharacteri | 91.83 | |
| cd06568 | 329 | GH20_SpHex_like A subgroup of the Glycosyl hydrola | 91.73 | |
| PF02449 | 374 | Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0 | 91.33 | |
| cd06545 | 253 | GH18_3CO4_chitinase The Bacteroides thetaiotaomicr | 91.17 | |
| cd06601 | 332 | GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) | 91.17 | |
| cd02875 | 358 | GH18_chitobiase Chitobiase (also known as di-N-ace | 90.85 | |
| PRK11052 | 695 | malQ 4-alpha-glucanotransferase; Provisional | 90.65 | |
| COG1501 | 772 | Alpha-glucosidases, family 31 of glycosyl hydrolas | 90.58 | |
| cd06569 | 445 | GH20_Sm-chitobiase-like The chitobiase of Serratia | 90.38 | |
| PF02806 | 95 | Alpha-amylase_C: Alpha amylase, C-terminal all-bet | 89.77 | |
| PLN02763 | 978 | hydrolase, hydrolyzing O-glycosyl compounds | 89.2 | |
| PRK14510 | 1221 | putative bifunctional 4-alpha-glucanotransferase/g | 89.0 | |
| cd02871 | 312 | GH18_chitinase_D-like GH18 domain of Chitinase D ( | 88.8 | |
| cd06563 | 357 | GH20_chitobiase-like The chitobiase of Serratia ma | 88.44 | |
| PF03198 | 314 | Glyco_hydro_72: Glucanosyltransferase; InterPro: I | 88.1 | |
| PLN03236 | 745 | 4-alpha-glucanotransferase; Provisional | 87.92 | |
| cd06603 | 339 | GH31_GANC_GANAB_alpha This family includes the clo | 87.63 | |
| PF14701 | 423 | hDGE_amylase: glucanotransferase domain of human g | 87.48 | |
| cd06564 | 326 | GH20_DspB_LnbB-like Glycosyl hydrolase family 20 ( | 87.29 | |
| PLN02950 | 909 | 4-alpha-glucanotransferase | 86.94 | |
| TIGR03356 | 427 | BGL beta-galactosidase. | 86.64 | |
| smart00812 | 384 | Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydro | 86.48 | |
| PRK15447 | 301 | putative protease; Provisional | 86.21 | |
| PF01120 | 346 | Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR00 | 85.16 | |
| cd06565 | 301 | GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) | 83.84 | |
| COG2342 | 300 | Predicted extracellular endo alpha-1,4 polygalacto | 83.81 | |
| TIGR01370 | 315 | cysRS possible cysteinyl-tRNA synthetase, Methanoc | 83.37 | |
| PF10566 | 273 | Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: | 83.12 | |
| cd02874 | 313 | GH18_CFLE_spore_hydrolase Cortical fragment-lytic | 82.94 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 82.68 | |
| PRK15452 | 443 | putative protease; Provisional | 82.54 | |
| PF10438 | 78 | Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal | 82.31 | |
| PRK10076 | 213 | pyruvate formate lyase II activase; Provisional | 81.88 | |
| PF01301 | 319 | Glyco_hydro_35: Glycosyl hydrolases family 35; Int | 81.56 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 81.44 | |
| PF02446 | 496 | Glyco_hydro_77: 4-alpha-glucanotransferase; InterP | 81.29 | |
| COG3867 | 403 | Arabinogalactan endo-1,4-beta-galactosidase [Carbo | 80.3 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 80.13 |
| >PLN02361 alpha-amylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-80 Score=611.65 Aligned_cols=393 Identities=87% Similarity=1.514 Sum_probs=351.8
Q ss_pred ccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 015125 21 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (413)
Q Consensus 21 ~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h 100 (413)
.+.++.||+|+|+|++++..+|++|+++|+||++||||+|||+|++++.++|||+|.|||+++|+|||++||++||++||
T Consensus 7 ~~~~~~v~lQ~F~W~~~~~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h 86 (401)
T PLN02361 7 IRNGREILLQAFNWESHKHDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMK 86 (401)
T ss_pred hcCCCcEEEEEEeccCCccHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHH
Confidence 55678999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHH
Q 015125 101 QHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRW 180 (413)
Q Consensus 101 ~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~ 180 (413)
++||+||+|+|+||++...++..+.|..|.+.+.+|++..++....+.++......+..+||||++||+||++++++++|
T Consensus 87 ~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~w 166 (401)
T PLN02361 87 QYNVRAMADIVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIW 166 (401)
T ss_pred HcCCEEEEEEccccccCCCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHH
Confidence 99999999999999987777777777777654456776544433333333344556788999999999999999999998
Q ss_pred HHhhcCCCeEeecccCCCcHHHHHHHHHhhCCCeEEEcccCCCCCC--CCCCCCccchhhHhHhhhhccCCCcccccCcc
Q 015125 181 LRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYN--SHGLDYNQDSHRQRIINWIDGTGQLSAAFDFT 258 (413)
Q Consensus 181 w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~~~~vgE~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~ 258 (413)
|++++||||||+|+|++++.+||++++++++|.|+|||+|.+..+. ++.++|.++..++.+..|++.+++..++|||+
T Consensus 167 l~~~~GiDGfRlDavk~~~~~f~~~~~~~~~p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF~ 246 (401)
T PLN02361 167 LRNDVGFQDFRFDFAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDFT 246 (401)
T ss_pred HHhcCCCCEEEEeccccCCHHHHHHHHHhhCCeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCCcceeecHH
Confidence 8877999999999999999999999999999989999999875442 45578887777788999999877788999999
Q ss_pred chHHHHHHhccchhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC
Q 015125 259 TKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD 338 (413)
Q Consensus 259 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g 338 (413)
++..+++++.++.+++.+..++.+++++..|.++|+|++|||++|+++.++.+..++++|+|+|||.||+||||||+.++
T Consensus 247 l~~~l~~a~~~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~~~~~~~~~~AyA~iLT~pG~P~Vyyg~~~~ 326 (401)
T PLN02361 247 TKGILQEAVKGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPSDHIMEGYAYILTHPGIPTVFYDHFYD 326 (401)
T ss_pred HHHHHHHHHhhhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhhccCCchHHHHHHHHHHHCCCCcCeEeeccccC
Confidence 99999999977778888877766677888899999999999999999988878889999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEECCEEEEEEcCCCCCCCCCCcEEeeeCCceEEeeC
Q 015125 339 WGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 413 (413)
Q Consensus 339 w~~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r~~~~lv~lnn~~~~~~~~~~~~~~s~~~~~~~~~ 413 (413)
|+.++.+.|++|+++||++++++.|+++++..++++++-.-+++++|-|+....+|++.+|+++.||.+|+||.+
T Consensus 327 ~~~~~~~~I~~Li~lRk~~~~~~~s~~~i~~a~~~~y~a~i~~~~~~k~g~~~~~p~~~~~~~~~~g~~~~~w~~ 401 (401)
T PLN02361 327 WGGSIHDQIVKLIDIRKRQDIHSRSSIRILEAQSNLYSAIIDEKLCMKIGDGSWCPSGREWTLATSGHRYAVWHK 401 (401)
T ss_pred CChHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCeEEEEECCeEEEEecCCCCCCCCCCceEEEecCceEEeeC
Confidence 998999999999999999999999999999999999999889999999999999998888999999999999986
|
|
| >PLN00196 alpha-amylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-78 Score=599.67 Aligned_cols=386 Identities=48% Similarity=0.988 Sum_probs=330.8
Q ss_pred CceeEEEeeecCCCCC--ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCC-CCCCCHHHHHHHHHHHH
Q 015125 24 GREILFQGFNWESCKH--DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMK 100 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~--g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~h 100 (413)
+++||+|+|+|+++++ |+|++|++|||||++||||+|||+||+++.++|||+|.|||+|+ ++|||++||++||++||
T Consensus 23 ~~~v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH 102 (428)
T PLN00196 23 AGQVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFH 102 (428)
T ss_pred CCCEEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHH
Confidence 4479999999998665 69999999999999999999999999999999999999999999 69999999999999999
Q ss_pred HcCCEEEEEEccccCcCCCCCCCCcccccCC----CCCCCCCCCee----ccCCCCCCCcCCCCCCCCCcCCCCCHHHHH
Q 015125 101 QHKVRAMADIVINHRVGTTQGHGGKYNRYDG----IPLSWDEHAVT----SCTGGLGNGSTGDNFHGVPNIDHTQHFVRK 172 (413)
Q Consensus 101 ~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~dln~~~~~vr~ 172 (413)
++||+||+|+|+||++.++....+.|..|.+ ...+|.+...+ .+.++.++...+..+..+||||++||+||+
T Consensus 103 ~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~ 182 (428)
T PLN00196 103 GKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQR 182 (428)
T ss_pred HCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHH
Confidence 9999999999999999887654444543332 12445432222 122233333455667899999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCCCeEEEcccCCCCC-CCCCCCCccchhhHhHhhhhccCCCc
Q 015125 173 DIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNY-NSHGLDYNQDSHRQRIINWIDGTGQL 251 (413)
Q Consensus 173 ~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~~~~vgE~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 251 (413)
+|+++++||++++||||||+|+|++++.+|+++++++.+|.|+|||+|.+++| +.+++.|.++.+++.+..|++.+++.
T Consensus 183 ~l~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~p~f~VGE~W~~~~~~~~~~~~~~~~~~r~~l~~~l~~~g~~ 262 (428)
T PLN00196 183 ELIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEYDQNAHRQELVNWVDRVGGA 262 (428)
T ss_pred HHHHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccCCcEEEEEEeccccccccCCccccchhhHHHHHHHHHhcCCc
Confidence 99999999988999999999999999999999999988899999999988666 46788888777788888999876542
Q ss_pred ---ccccCccchHHHHHHhccchhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCe
Q 015125 252 ---SAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGI 328 (413)
Q Consensus 252 ---~~~~df~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGi 328 (413)
.++|||++...+..++.++.+++.+......++++..|..+|+|++||||+|+++.+..+..+.++|+|++||+||+
T Consensus 263 ~~~~~~fDF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~~~~~~~~~~~lAyA~iLT~pG~ 342 (428)
T PLN00196 263 ASPATVFDFTTKGILNVAVEGELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQHMWPFPSDKVMQGYAYILTHPGN 342 (428)
T ss_pred cCcceeecccchHHHHHHhcCCchhhhhhcccCcchhhcChhhceeeccCCCCccccccCCCccchHHHHHHHHHcCCCc
Confidence 45899999876666666666677666655556677789999999999999999998876777889999999999999
Q ss_pred eEEecCcccCCchhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEECCEEEEEEcCC----CCCCCCCCcEEeee
Q 015125 329 PSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAIIGDKVCMKIGDG----SWCPAGKEWTLATS 404 (413)
Q Consensus 329 P~Iy~G~E~gw~~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r~~~~lv~lnn~----~~~~~~~~~~~~~s 404 (413)
||||||+.|+|+ +.+.|++|+++|+++++++.|+++++..+++++++.|+++++|+||.. ..+|+ +|++++|
T Consensus 343 P~IyYg~~~~~~--~~~~i~~Li~~Rk~~~~~~~g~~~~~~a~~d~yv~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 418 (428)
T PLN00196 343 PCIFYDHFFDWG--LKEEIAALVSIRNRNGITPTSELRIMEADADLYLAEIDGKVIVKIGSRYDVSHLIPE--GFQVVAH 418 (428)
T ss_pred ceEeeCCCcCcc--HHHHHHHHHHHHHhCCCcCCccEEEEEecCCEEEEEECCEEEEEECCCCCccccCcc--cceEEEe
Confidence 999999999996 888999999999999999999999999999999999999999999994 67786 6999999
Q ss_pred CCceEEeeC
Q 015125 405 GHKYAVWHK 413 (413)
Q Consensus 405 ~~~~~~~~~ 413 (413)
|.+|+||.+
T Consensus 419 g~~~~~w~~ 427 (428)
T PLN00196 419 GNGYAVWEK 427 (428)
T ss_pred cCCeEEEec
Confidence 999999975
|
|
| >PLN02784 alpha-amylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-72 Score=577.29 Aligned_cols=390 Identities=52% Similarity=1.032 Sum_probs=345.4
Q ss_pred cccCCceeEEEeeecCCCCCc-cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 015125 20 VIRNGREILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHK 98 (413)
Q Consensus 20 ~~~~~~~~i~~~f~~~~~~~g-~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~ 98 (413)
.+..+.++|+|+|+|+++++| +|++|+++|+||++||||+|||+|++++.+++||+|.|||+++++|||++||++||++
T Consensus 497 ~~~~~~eVmlQgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a 576 (894)
T PLN02784 497 GTGSGFEILCQGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKS 576 (894)
T ss_pred cccCCceEEEEeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHH
Confidence 466778899999999999996 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccC---CCCCCCcCCCCCCCCCcCCCCCHHHHHHHH
Q 015125 99 MKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCT---GGLGNGSTGDNFHGVPNIDHTQHFVRKDII 175 (413)
Q Consensus 99 ~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~dln~~~~~vr~~l~ 175 (413)
||++||+||+|+|+||++..+...++.|..|.+ ..+|++..++... .+.++.+....|..+||||+.||+||++++
T Consensus 577 ~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g-~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~eL~ 655 (894)
T PLN02784 577 FHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGG-RLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLK 655 (894)
T ss_pred HHHCCCEEEEEECcccccccccCCCCcccccCC-eecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHHHHH
Confidence 999999999999999999876554556665554 3456654333221 123333445567899999999999999999
Q ss_pred HHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCCCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCccccc
Q 015125 176 AWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAF 255 (413)
Q Consensus 176 ~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 255 (413)
++++||++++||||||+|+|++++.+|+++++++.++.|+|||+|.+++|..+.++|+++++++.+..|++.+++..++|
T Consensus 656 ~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~~~g~~~Ynqd~~rq~l~dwi~~tgg~~saF 735 (894)
T PLN02784 656 EWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINATNGTAGAF 735 (894)
T ss_pred HHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEeccccccccCccccCchhHHHHHHHHHHhCCCceeee
Confidence 99999998999999999999999999999999999999999999998777678999999999999999999988888999
Q ss_pred CccchHHHHHHhc-cchhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecC
Q 015125 256 DFTTKGILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYD 334 (413)
Q Consensus 256 df~~~~~l~~~~~-g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G 334 (413)
||+++..+.+++. ++.+++.+..++.+++++..|.++|+|++||||++.++.+..+..+..+|||+|||.||+||||||
T Consensus 736 Dfplk~~L~~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~~w~~p~~k~~~AYAyILthpG~PcVFy~ 815 (894)
T PLN02784 736 DVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEGKEMQGYAYILTHPGTPAVFYD 815 (894)
T ss_pred chhHHHHHHHHHhccchhhhhhccCCCCCeeccccCceEEEecCCCCCCCcccCCCCccchhhHHHHHHcCCCcceEEeh
Confidence 9999999999995 567888887777788999999999999999999998887777777888999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEECCEEEEEEcCCCCCCCC--CCcEEeeeCCceEEee
Q 015125 335 HFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPAG--KEWTLATSGHKYAVWH 412 (413)
Q Consensus 335 ~E~gw~~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r~~~~lv~lnn~~~~~~~--~~~~~~~s~~~~~~~~ 412 (413)
+.|+ .+.+.|++|+.+|+++-.-....++++..+.++++-.-+++++|-|+..+.+|+. .+|++++||.+|+||.
T Consensus 816 h~y~---~~~~~I~~Li~iRk~~gI~~~S~v~i~~a~~~~Y~a~i~~k~~~kiG~~~~~p~~~~~~~~~~~sG~~yavW~ 892 (894)
T PLN02784 816 HIFS---HYHPEIASLISLRNRQKIHCRSEVKITKAERDVYAAIIDEKVAMKIGPGHYEPPNGPQNWSVALEGQDYKVWE 892 (894)
T ss_pred hhhh---hhHHHHHHHHHHHHHcCCCCCCceeEEEecCCcEEEEeCCeeEEEECCcccCCCCCCCceEEEEecCCeEEEe
Confidence 9985 3577799999999999777788999999999999998899999999999999753 4799999999999997
Q ss_pred C
Q 015125 413 K 413 (413)
Q Consensus 413 ~ 413 (413)
+
T Consensus 893 k 893 (894)
T PLN02784 893 T 893 (894)
T ss_pred C
Confidence 5
|
|
| >PRK09441 cytoplasmic alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-67 Score=534.29 Aligned_cols=348 Identities=26% Similarity=0.469 Sum_probs=268.1
Q ss_pred ceeEEEeeecCCCCCc-cHHHHHhhhhhHHHcCCCEEEcCCCCCCCC---CCCCCcccCC---------CCCCCCCCHHH
Q 015125 25 REILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFA---PEGYLPQNLY---------SLNSSYGSEHL 91 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~g-~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~---~~gY~~~d~~---------~id~~~Gt~~~ 91 (413)
.+||||+|+|++..+| +|++|++|||||++||||+|||+||+++.+ +|||++.||| .|||+|||++|
T Consensus 3 ~~~~~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~d 82 (479)
T PRK09441 3 NGTMMQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEE 82 (479)
T ss_pred CceEEEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHH
Confidence 4699999999988776 788999999999999999999999999874 6999999999 68999999999
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCC--CCC----------C----c-----ccccCCC-----C----CCCCCCCe
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQ--GHG----------G----K-----YNRYDGI-----P----LSWDEHAV 141 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~--~~~----------~----~-----y~~~~~~-----~----~~~~~~~~ 141 (413)
||+||++||++||+||+|+|+|||+..+. ++. + . |..|... . ..|+..+-
T Consensus 83 l~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (479)
T PRK09441 83 LLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSG 162 (479)
T ss_pred HHHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCC
Confidence 99999999999999999999999997443 221 0 0 0011100 0 01111100
Q ss_pred eccC---------------CCCCC----CcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHH
Q 015125 142 TSCT---------------GGLGN----GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKY 202 (413)
Q Consensus 142 ~~~~---------------~~~~~----~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~ 202 (413)
..+. ..|.. +..++.+..+||||++||+||++|++++++|++++||||||+|+|++++.+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~~f 242 (479)
T PRK09441 163 TDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAWF 242 (479)
T ss_pred cccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCHHH
Confidence 0000 11111 1122345669999999999999999999999977999999999999999999
Q ss_pred HHHHHHhhC-----CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhcc-chhhhhh
Q 015125 203 VKEYIEGAR-----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG-QFWRLRD 276 (413)
Q Consensus 203 ~~~~~~~~~-----~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g-~~~~~~~ 276 (413)
|++++++++ +.+++||+|.+. ...+..|++..+...++|||++...+++++.+ ....+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~vGE~~~~~--------------~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~~~~~~l~~ 308 (479)
T PRK09441 243 IKEWIEHVREVAGKDLFIVGEYWSHD--------------VDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQGRDYDMRN 308 (479)
T ss_pred HHHHHHHHHHhcCCCeEEEEeecCCC--------------hHHHHHHHHhcCCCceEecHHHHHHHHHHHhcCCccchHh
Confidence 999998864 368999999763 24566777654445679999999999998843 3333433
Q ss_pred hcCCCCCcccccCCcceecccCCCCCcCCCCCCCCh-hHHHHHHHHHhcCC-CeeEEecCcccCCch-----hHHHHHHH
Q 015125 277 AQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPS-NHIMEGYAYILMHP-GIPSVFYDHFYDWGD-----SIHNQIVK 349 (413)
Q Consensus 277 ~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~-~~~~la~a~ll~~p-GiP~Iy~G~E~gw~~-----~l~~~i~~ 349 (413)
.... ......|..+++|++|||++|+.+...... .+.++|++++||+| |+|+||||+|+|+.. +++++|++
T Consensus 309 ~~~~--~~~~~~~~~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~~~~~l~~~i~~ 386 (479)
T PRK09441 309 IFDG--TLVEADPFHAVTFVDNHDTQPGQALESPVEPWFKPLAYALILLREEGYPCVFYGDYYGASGYYIDMPFKEKLDK 386 (479)
T ss_pred hhCc--chhhcCcccceeeeccccCCCcccccccccccchHHHHHHHHhCCCCceeeEeccccCCCCCcccchHHHHHHH
Confidence 3321 112234557899999999999988654322 23689999999999 999999999998753 69999999
Q ss_pred HHHHHHhCcccCCCCeEEEEecCCEEEEEE-C----CEEEEEEcCCC
Q 015125 350 LMDVRRQQDIHSRSSIKILEAQSNLYSAII-G----DKVCMKIGDGS 391 (413)
Q Consensus 350 L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r-~----~~~lv~lnn~~ 391 (413)
|+++|+++ ..|++..+..++++++|.| + +.++|+|||++
T Consensus 387 Li~lRk~~---~~G~~~~~~~~~~~~~~~R~~~~~~~~vvvvinn~~ 430 (479)
T PRK09441 387 LLLARKNF---AYGEQTDYFDHPNCIGWTRSGDEENPGLAVVISNGD 430 (479)
T ss_pred HHHHHHHh---CCCCeeEeecCCCEEEEEEecCCCCccEEEEEECCC
Confidence 99999997 4788988888899999999 2 35888898854
|
|
| >PRK10785 maltodextrin glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=525.93 Aligned_cols=324 Identities=18% Similarity=0.285 Sum_probs=245.3
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
|||+||++||||||+||||+|||+||++++++|||++.||++|||+|||+++|++||++||++|||||||+|+||+|.+|
T Consensus 176 GDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~ 255 (598)
T PRK10785 176 GDLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSH 255 (598)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC-------cccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHH----HHHHHHhh-cCC
Q 015125 120 QGHGG-------KYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIA----WLRWLRNT-VGF 187 (413)
Q Consensus 120 ~~~~~-------~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~----~~~~w~~~-~gv 187 (413)
++++. .|..-.+...+|.. +.+ .+.......+..+|+||++||+||++|++ ++++|+++ +||
T Consensus 256 ~~f~~~~~~~~ga~~~~~spy~dwf~-----~~~-~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~gi 329 (598)
T PRK10785 256 PWFDRHNRGTGGACHHPDSPWRDWYS-----FSD-DGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNI 329 (598)
T ss_pred HHHHHhhccccccccCCCCCcceeeE-----ECC-CCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCC
Confidence 76531 11110000111211 000 01111112346799999999999999995 89999986 999
Q ss_pred CeEeecccCCC--------cHHHHHHHHHhhC---C-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCccccc
Q 015125 188 QDFRFDFARGY--------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAF 255 (413)
Q Consensus 188 DGfR~D~a~~i--------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 255 (413)
||||+|+|+.+ +.+||+++.++++ | .+++||+|... ..|+. ++++++++
T Consensus 330 DG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~------------------~~~l~-~~~~d~~m 390 (598)
T PRK10785 330 DGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENPEAYVLGEHFGDA------------------RQWLQ-ADVEDAAM 390 (598)
T ss_pred cEEEEecHhHhccccCccccHHHHHHHHHHHHhhCCCeEEEEeccCCh------------------hhhcc-Cccccccc
Confidence 99999999988 4689999988875 3 78899999652 12222 12234444
Q ss_pred Cc-cchHHHHHHhcc----------chhhhhhhcCCCCCcccccCC----cceecccCCCCCcCCCCCCCChhHHHHHHH
Q 015125 256 DF-TTKGILQEAVKG----------QFWRLRDAQGKPPGVMGWWPS----RAVTFLDNHDTGSTQAHWPFPSNHIMEGYA 320 (413)
Q Consensus 256 df-~~~~~l~~~~~g----------~~~~~~~~~~~~~~~~~~~p~----~~v~flenHD~~R~~~~~~~~~~~~~la~a 320 (413)
++ .+...++..+.+ +...+...+.. .....|. .++||++|||++|+.+.+..+..++++|++
T Consensus 391 ny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ 467 (598)
T PRK10785 391 NYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDE---YRAGLPHQQQLRQFNQLDSHDTARFKTLLGGDKARMPLALV 467 (598)
T ss_pred cchhhhhHHHHHhhccccccCccCCCHHHHHHHHHH---HHHhCCHHHHHHhhhccCCCccchhhhhhCCCHHHHHHHHH
Confidence 43 222233333321 11111111110 0011121 357999999999999988767788999999
Q ss_pred HHhcCCCeeEEecCcccC--------------Cc-----hhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEE--
Q 015125 321 YILMHPGIPSVFYDHFYD--------------WG-----DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAII-- 379 (413)
Q Consensus 321 ~ll~~pGiP~Iy~G~E~g--------------w~-----~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r-- 379 (413)
++||+||+||||||||+| |+ .++++++|+|++||+++|+|+.|+++.+..++++++|.|
T Consensus 468 ll~t~pGiP~IYYGdE~G~~g~~dp~~R~~m~W~~~~~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~~~~v~af~R~~ 547 (598)
T PRK10785 468 WLFTWPGVPCIYYGDEVGLDGGNDPFCRKPFPWDEAKQDGALLALYQRMIALRKKSQALRRGGCQVLYAEGNVVVFARVL 547 (598)
T ss_pred HHHhCCCCcEEEeeeeccccCCCCCCccCCcCCCcccCchHHHHHHHHHHHHHhhCcccccCcEEEEEeCCCEEEEEEEC
Confidence 999999999999999975 43 479999999999999999999999999998889999998
Q ss_pred -CCEEEEEEcCCC
Q 015125 380 -GDKVCMKIGDGS 391 (413)
Q Consensus 380 -~~~~lv~lnn~~ 391 (413)
++.++|++|++.
T Consensus 548 ~~~~vlVviN~s~ 560 (598)
T PRK10785 548 QQQRVLVAINRGE 560 (598)
T ss_pred CCCEEEEEEECCC
Confidence 578899999873
|
|
| >PRK09505 malS alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-61 Score=501.73 Aligned_cols=348 Identities=17% Similarity=0.256 Sum_probs=256.2
Q ss_pred ccccccccCCceeEEEeeecCCCC-------------C----------ccHHHHHhhhhhHHHcCCCEEEcCCCCCC---
Q 015125 15 TDLGAVIRNGREILFQGFNWESCK-------------H----------DWWRNLERKVPDISKSGFTSVWLPPATHS--- 68 (413)
Q Consensus 15 ~~~~~~~~~~~~~i~~~f~~~~~~-------------~----------g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~--- 68 (413)
+..+..++. .||||+|.-.|++ + |||+||+++|+||++||||+|||+||+++
T Consensus 181 ~~~~~~W~~--aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~ 258 (683)
T PRK09505 181 AAAPFDWHN--ATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQQLGVNALWISSPLEQIHG 258 (683)
T ss_pred CCCChhhcc--CcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHHHcCCCEEEeCcccccccc
Confidence 334666755 5899998876641 1 79999999999999999999999999986
Q ss_pred ------------CCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCC------CCC-------
Q 015125 69 ------------FAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ------GHG------- 123 (413)
Q Consensus 69 ------------~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~------~~~------- 123 (413)
.++|||++.||+.|||+||++++|++||++||++||+||||+|+||++..+. +++
T Consensus 259 ~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~ 338 (683)
T PRK09505 259 WVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGD 338 (683)
T ss_pred ccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhcc
Confidence 2679999999999999999999999999999999999999999999996321 111
Q ss_pred -------CcccccC-CCCCCCCCCCe-eccCC--CCCCCc-------------------CCCCCCCCCcCCCCC------
Q 015125 124 -------GKYNRYD-GIPLSWDEHAV-TSCTG--GLGNGS-------------------TGDNFHGVPNIDHTQ------ 167 (413)
Q Consensus 124 -------~~y~~~~-~~~~~~~~~~~-~~~~~--~~~~~~-------------------~~~~~~~~~dln~~~------ 167 (413)
+.|..|. ..+..|++.+. ..+.+ .|...+ ..+.+..|||||+++
T Consensus 339 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~l 418 (683)
T PRK09505 339 ENKKTLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGL 418 (683)
T ss_pred ccccccCcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCcccccc
Confidence 1222211 11233443211 11111 111000 012235688888874
Q ss_pred -----------------HHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC------------------C
Q 015125 168 -----------------HFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR------------------P 212 (413)
Q Consensus 168 -----------------~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~------------------~ 212 (413)
|+||++|++++++|++++||||||+|+|+|++.+||+++.++++ +
T Consensus 419 p~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~~~~~~~ 498 (683)
T PRK09505 419 PVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDKALDDAP 498 (683)
T ss_pred chhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhccccccccCC
Confidence 59999999999999989999999999999999999999876541 2
Q ss_pred CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhc--cchhhhhhhcCCCCCcccccCC
Q 015125 213 IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK--GQFWRLRDAQGKPPGVMGWWPS 290 (413)
Q Consensus 213 ~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~--g~~~~~~~~~~~~~~~~~~~p~ 290 (413)
++++||+|...+ ....|.. .++++++||++...+.+++. .....+..... ... .+.
T Consensus 499 ~~~vGEvw~~~~---------------~~~~y~~--~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~~---~~~--~~~ 556 (683)
T PRK09505 499 FWMTGEAWGHGV---------------MKSDYYR--HGFDAMINFDYQEQAAKAVDCLAQMDPTYQQMA---EKL--QDF 556 (683)
T ss_pred eEEEEEecCCch---------------hhHHHHh--hcCccccCchHHHHHHHHHHHHHHHHHHHHHHh---hhc--Ccc
Confidence 579999997521 1123332 35789999998766554432 11222211111 000 122
Q ss_pred cceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC-------------------Cc------hhHHH
Q 015125 291 RAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD-------------------WG------DSIHN 345 (413)
Q Consensus 291 ~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g-------------------w~------~~l~~ 345 (413)
..++|++|||++|+.+.... ..++++|++++||+||+|+||||+|+| |. .++++
T Consensus 557 ~~l~FLdNHDt~Rf~s~~~~-~~~~klAaall~tlpGiP~IYYGdEiGm~gg~~g~DP~~~~R~~M~W~~~~~~~~~Ll~ 635 (683)
T PRK09505 557 NVLSYLSSHDTRLFFEGGQS-YAKQRRAAELLLLAPGAVQIYYGDESARPFGPTGSDPLQGTRSDMNWQEVSGKSAALLA 635 (683)
T ss_pred ceeecccCCChhhhhhhcCc-hHHHHHHHHHHHhCCCCcEEEechhhCccCCCCCCCCcccccccCCccccccchHHHHH
Confidence 46789999999999887653 368899999999999999999999975 32 26899
Q ss_pred HHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEE---CCEEEEEEc
Q 015125 346 QIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAII---GDKVCMKIG 388 (413)
Q Consensus 346 ~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r---~~~~lv~ln 388 (413)
++|+|++||+++|+|+.|+++.+. ++++++|.| +++++||+|
T Consensus 636 ~~kkLi~LRk~~pAL~~G~~~~l~-~~~~~aF~R~~~~d~vlVv~~ 680 (683)
T PRK09505 636 HWQKLGQFRARHPAIGAGKQTTLS-LKQYYAFVREHGDDKVMVVWA 680 (683)
T ss_pred HHHHHHHHHhhCHHhhCCceEEec-cCCEEEEEEEeCCCEEEEEEe
Confidence 999999999999999999999875 568999999 567777776
|
|
| >TIGR02456 treS_nterm trehalose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=497.43 Aligned_cols=365 Identities=16% Similarity=0.251 Sum_probs=267.2
Q ss_pred eeEEEeeecCCCC-----CccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCK-----HDWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 26 ~~i~~~f~~~~~~-----~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.||||+|..+|.+ -|||+||+++||||++||||+|||+||+++++ +|||++.||++|+|+||+.++|++||++|
T Consensus 6 ~viYqi~~~~f~d~~~~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~a 85 (539)
T TIGR02456 6 AVFYEVHVRSFFDSNGDGIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEA 85 (539)
T ss_pred ceEEEEehhHhhcCCCCCccCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHH
Confidence 5999999998875 37999999999999999999999999999986 79999999999999999999999999999
Q ss_pred HHcCCEEEEEEccccCcCCCCCCC-------Ccccc---cCCCCCCCCCCC--eecc-CCCCC-CC-----cCCCCCCCC
Q 015125 100 KQHKVRAMADIVINHRVGTTQGHG-------GKYNR---YDGIPLSWDEHA--VTSC-TGGLG-NG-----STGDNFHGV 160 (413)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~~-------~~y~~---~~~~~~~~~~~~--~~~~-~~~~~-~~-----~~~~~~~~~ 160 (413)
|++||+||+|+|+||++.++++++ +.|.. +.+.+..+.... ++.. ...|. .+ .....+..+
T Consensus 86 h~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~ 165 (539)
T TIGR02456 86 HARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQ 165 (539)
T ss_pred HHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccCCC
Confidence 999999999999999999998652 22211 111000111000 0000 01111 00 011134689
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCC-------------cHHHHHHHHHhhC---C-CeEEEcccCCC
Q 015125 161 PNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY-------------SAKYVKEYIEGAR---P-IFSVGEYWDSC 223 (413)
Q Consensus 161 ~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i-------------~~~~~~~~~~~~~---~-~~~vgE~~~~~ 223 (413)
|+||++||+||++|++++++|+ ++||||||||+++++ ..+||+++.+.++ | .+++||++..
T Consensus 166 pdln~~np~vr~~l~~~~~~w~-~~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~~iaE~~~~- 243 (539)
T TIGR02456 166 PDLNYDNPAVHDAVHDVMRFWL-DLGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRMLLAEANQW- 243 (539)
T ss_pred CccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeEEEEEeCCC-
Confidence 9999999999999999999999 699999999999876 3579999988775 3 6789997543
Q ss_pred CCCCCCCCCccchhhHhHhhhhcc-CC-CcccccCccchHHHHHHh-ccchhhhhhhcCCCCCcccccCCcceecccCCC
Q 015125 224 NYNSHGLDYNQDSHRQRIINWIDG-TG-QLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHD 300 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~~~df~~~~~l~~~~-~g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD 300 (413)
...+..|.+. .+ +++++|+|++...+..++ .++...+...+...... ..+...++|++|||
T Consensus 244 --------------~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~~~~~--~~~~~~~~fl~nHD 307 (539)
T TIGR02456 244 --------------PEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKETPDI--PDSCQWCIFLRNHD 307 (539)
T ss_pred --------------HHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHHhhhc--cCCCceeeecCCCC
Confidence 2345566543 22 578899999876555444 33333333322211110 01224578999999
Q ss_pred CCc-------------------------------CCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC-----------
Q 015125 301 TGS-------------------------------TQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD----------- 338 (413)
Q Consensus 301 ~~R-------------------------------~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g----------- 338 (413)
++| +.+.++.+..++++|++++||+||+|+||||+|+|
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~~~~~~~~~ 387 (539)
T TIGR02456 308 ELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGDNIWLGDRN 387 (539)
T ss_pred ccCccccChhhhhhhhhhccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcCCCccCCCc
Confidence 954 33444445567899999999999999999999975
Q ss_pred -------Cc---------------------------------------hhHHHHHHHHHHHHHhCcccCCCCeEEEEec-
Q 015125 339 -------WG---------------------------------------DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQ- 371 (413)
Q Consensus 339 -------w~---------------------------------------~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~- 371 (413)
|+ .+++.++|+||+||+++|+|..|+++.+..+
T Consensus 388 ~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~~~~l~~~~ 467 (539)
T TIGR02456 388 GVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGSLTFLPTGN 467 (539)
T ss_pred CccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCcccccCceEEEecCC
Confidence 21 1378999999999999999999999998764
Q ss_pred CCEEEEEE---CCEEEEEEcCCCCC-------C--CCCCcEEeeeCCce
Q 015125 372 SNLYSAII---GDKVCMKIGDGSWC-------P--AGKEWTLATSGHKY 408 (413)
Q Consensus 372 ~~~~~~~r---~~~~lv~lnn~~~~-------~--~~~~~~~~~s~~~~ 408 (413)
+++++|.| ++.++|++|++... + .++.+.+++++..+
T Consensus 468 ~~v~~f~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~dl~~~~~~ 516 (539)
T TIGR02456 468 RRVLAFLREYEGERVLCVFNFSRNPQAVELDLSEFAGRVPVELIGGAPF 516 (539)
T ss_pred CCEEEEEEEcCCcEEEEEEeCCCCCEEeeccccccccCcceecccCCcc
Confidence 46999998 56788888885421 1 13355666666543
|
Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530). |
| >TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-60 Score=485.55 Aligned_cols=347 Identities=18% Similarity=0.238 Sum_probs=255.6
Q ss_pred eeEEEeeecCCCCC-----ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCKH-----DWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-----g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.||||+|.+.|++. |||+||+++|+||++||||+|||+||+++++ .+||++.||++|+|+|||+++|++||++|
T Consensus 5 ~v~Y~i~~~~f~~~~~~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~a 84 (543)
T TIGR02403 5 KVIYQIYPKSFYDSTGDGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEA 84 (543)
T ss_pred CEEEEEEhHHHhcCCCCCccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHH
Confidence 69999999988753 7999999999999999999999999999986 47999999999999999999999999999
Q ss_pred HHcCCEEEEEEccccCcCCCCCCC------Ccccc---cCCC----CCCCCCCCeeccCCCCCC------CcCCCCCCCC
Q 015125 100 KQHKVRAMADIVINHRVGTTQGHG------GKYNR---YDGI----PLSWDEHAVTSCTGGLGN------GSTGDNFHGV 160 (413)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~~------~~y~~---~~~~----~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 160 (413)
|++||+||+|+|+||++.+|+|+. ++|.+ +.+. +.+|... . -...|.. .+.......+
T Consensus 85 h~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~--~-~~~~w~~~~~~~~~y~~~f~~~~ 161 (543)
T TIGR02403 85 KKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSK--F-GGSAWEYFGDTGQYYLHLFDKTQ 161 (543)
T ss_pred HHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCccccc--C-CCcCccccCCCCceEEeccCCcC
Confidence 999999999999999999998653 23322 1110 0111110 0 0011110 0111122579
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc-----------------------HHHHHHHHHhhC---CCe
Q 015125 161 PNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-----------------------AKYVKEYIEGAR---PIF 214 (413)
Q Consensus 161 ~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~-----------------------~~~~~~~~~~~~---~~~ 214 (413)
||||++||+||++|++++++|+ ++||||||||+|++++ .+||+++.+.++ +.|
T Consensus 162 pdln~~np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 240 (543)
T TIGR02403 162 ADLNWENPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFGDNDSV 240 (543)
T ss_pred CccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhccCCeE
Confidence 9999999999999999999999 6899999999999985 468999987763 378
Q ss_pred EEEcccCCCCCCCCCCCCccchhhHhHhhhhcc-CCCcccccCccchHHHHHHhcc--------chhhhhhhcCCCCCcc
Q 015125 215 SVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQEAVKG--------QFWRLRDAQGKPPGVM 285 (413)
Q Consensus 215 ~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~df~~~~~l~~~~~g--------~~~~~~~~~~~~~~~~ 285 (413)
+|||+|... ...+..|... ++.++++|+|.. .......+ +...+..........+
T Consensus 241 lvgE~~~~~--------------~~~~~~y~~~~~~~~d~~~nf~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 304 (543)
T TIGR02403 241 TVGEMSSTT--------------IENCIRYSNPENKELSMVFTFHH--LKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGM 304 (543)
T ss_pred EEEEeCCCC--------------HHHHHhhhCCCCCeeCeEEChhh--hhchhccccccccCCCCHHHHHHHHHHHHHhc
Confidence 999999642 2445566532 345778888752 11121111 1112222111000000
Q ss_pred cccCCcceecccCCCCCcCCCCCCCCh----hHHHHHHHHHhcCCCeeEEecCcccCCc---------------------
Q 015125 286 GWWPSRAVTFLDNHDTGSTQAHWPFPS----NHIMEGYAYILMHPGIPSVFYDHFYDWG--------------------- 340 (413)
Q Consensus 286 ~~~p~~~v~flenHD~~R~~~~~~~~~----~~~~la~a~ll~~pGiP~Iy~G~E~gw~--------------------- 340 (413)
.......++|++|||++|+.+.++... ...+++++++||+||+|+||||||+|..
T Consensus 305 ~~~~~~~~~fl~NHD~~R~~s~~g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~ 384 (543)
T TIGR02403 305 QAGGGWNALFWNNHDQPRAVSRFGDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDI 384 (543)
T ss_pred cccCcceeeecCCCChhhHHHhcCCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHHHH
Confidence 001224567999999999998886432 2578888999999999999999997522
Q ss_pred --------------------------------------------------------------hhHHHHHHHHHHHHHhCc
Q 015125 341 --------------------------------------------------------------DSIHNQIVKLMDVRRQQD 358 (413)
Q Consensus 341 --------------------------------------------------------------~~l~~~i~~L~~lR~~~p 358 (413)
.++++++|+||+||+++|
T Consensus 385 ~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~ 464 (543)
T TIGR02403 385 LLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKSEP 464 (543)
T ss_pred HhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhhcc
Confidence 248899999999999999
Q ss_pred ccCCCCeEEEEecC-CEEEEEE---CCEEEEEEcCCCC
Q 015125 359 IHSRSSIKILEAQS-NLYSAII---GDKVCMKIGDGSW 392 (413)
Q Consensus 359 ~l~~G~~~~~~~~~-~~~~~~r---~~~~lv~lnn~~~ 392 (413)
+|..|+++.+..++ ++++|.| +++++|++|.++.
T Consensus 465 aL~~G~~~~~~~~~~~v~a~~R~~~~~~~lVv~N~s~~ 502 (543)
T TIGR02403 465 VITDGDYQFLLPDDPSVWAYTRTYKNQKLLVINNFYGE 502 (543)
T ss_pred cccCccEEEeecCCCcEEEEEEEcCCcEEEEEEECCCC
Confidence 99999999987664 7999998 5678888888653
|
Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor. |
| >PRK10933 trehalose-6-phosphate hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-59 Score=478.77 Aligned_cols=363 Identities=16% Similarity=0.196 Sum_probs=259.0
Q ss_pred eeEEEeeecCCCC-----CccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCK-----HDWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 26 ~~i~~~f~~~~~~-----~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.||||+|..+|.+ .|||+||+++|+||++||||+|||+||++++. .|||+|.||++|||+|||+++|++||++|
T Consensus 11 ~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~ 90 (551)
T PRK10933 11 GVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQA 90 (551)
T ss_pred CeEEEEEchHhhcCCCCCCcCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHH
Confidence 6999999998865 37999999999999999999999999999876 68999999999999999999999999999
Q ss_pred HHcCCEEEEEEccccCcCCCCCCCC------ccccc---CCC-----CCCCCCC---CeeccCCCCCCCcCCCCCCCCCc
Q 015125 100 KQHKVRAMADIVINHRVGTTQGHGG------KYNRY---DGI-----PLSWDEH---AVTSCTGGLGNGSTGDNFHGVPN 162 (413)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~~~------~y~~~---~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d 162 (413)
|++||+||+|+|+||++.+|+|+.. +|.++ .+. +..|... ....+....+..........+||
T Consensus 91 h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pd 170 (551)
T PRK10933 91 KSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQAD 170 (551)
T ss_pred HHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeecccccCCc
Confidence 9999999999999999999987532 23221 110 0111100 00000000000111112357999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcH-----------------------HHHHHHHHhhC---CCeEE
Q 015125 163 IDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA-----------------------KYVKEYIEGAR---PIFSV 216 (413)
Q Consensus 163 ln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~-----------------------~~~~~~~~~~~---~~~~v 216 (413)
||++||+||++|++++++|+ ++||||||+|+|++++. +||+++.+.+. ..++|
T Consensus 171 Ln~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 249 (551)
T PRK10933 171 LNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRDVFTPRGLMTV 249 (551)
T ss_pred cCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHHhhcccCcEEE
Confidence 99999999999999999999 79999999999998863 57888876542 26789
Q ss_pred EcccCCCCCCCCCCCCccchhhHhHhhhhcc-CCCcccccCccchHHHHHHhccch--------hhhhhhcCCCCCcccc
Q 015125 217 GEYWDSCNYNSHGLDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQEAVKGQF--------WRLRDAQGKPPGVMGW 287 (413)
Q Consensus 217 gE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~df~~~~~l~~~~~g~~--------~~~~~~~~~~~~~~~~ 287 (413)
||+|... ...+..|... +..+++.|+|.. .......+.. ..+..........+.
T Consensus 250 gE~~~~~--------------~~~~~~y~~~~~~~~~~~fnf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 312 (551)
T PRK10933 250 GEMSSTS--------------LEHCQRYAALTGSELSMTFNFHH--LKVDYPNGEKWTLAKPDFVALKTLFRHWQQGMH- 312 (551)
T ss_pred EeecCCC--------------HHHHHHhhcccCCeeeeEecHHH--hhhhhccCCcccccccCHHHHHHHHHHHHHhhc-
Confidence 9998642 2345555432 334667777742 1222222211 111111110000010
Q ss_pred cCCcceecccCCCCCcCCCCCCCChh----HHHHHHHHHhcCCCeeEEecCcccCCc-----------------------
Q 015125 288 WPSRAVTFLDNHDTGSTQAHWPFPSN----HIMEGYAYILMHPGIPSVFYDHFYDWG----------------------- 340 (413)
Q Consensus 288 ~p~~~v~flenHD~~R~~~~~~~~~~----~~~la~a~ll~~pGiP~Iy~G~E~gw~----------------------- 340 (413)
.......|++|||++|+.++++.+.. .++++++++||+||+|+||||||+|..
T Consensus 313 ~~~~~~~fl~NHD~~R~~sr~g~~~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~ 392 (551)
T PRK10933 313 NVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELR 392 (551)
T ss_pred ccCeeccccCCCCcccHHHHcCCchhHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHHh
Confidence 11245689999999999998864422 367788899999999999999997532
Q ss_pred ------------------------------------------------------------hhHHHHHHHHHHHHHhCccc
Q 015125 341 ------------------------------------------------------------DSIHNQIVKLMDVRRQQDIH 360 (413)
Q Consensus 341 ------------------------------------------------------------~~l~~~i~~L~~lR~~~p~l 360 (413)
.+++.++|+||+||+++|+|
T Consensus 393 ~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL 472 (551)
T PRK10933 393 NDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVL 472 (551)
T ss_pred hcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHHhcCcccHHHHHHHHHHHhhcChhh
Confidence 13789999999999999999
Q ss_pred CCCCeEEEEe-cCCEEEEEE---CCEEEEEEcCCCCC-----C-CCCCcEEeeeCC
Q 015125 361 SRSSIKILEA-QSNLYSAII---GDKVCMKIGDGSWC-----P-AGKEWTLATSGH 406 (413)
Q Consensus 361 ~~G~~~~~~~-~~~~~~~~r---~~~~lv~lnn~~~~-----~-~~~~~~~~~s~~ 406 (413)
..|+++.+.. ++.+++|.| ++.++|++|.++.. + ..+.|++++++.
T Consensus 473 ~~G~~~~~~~~~~~v~af~R~~~~~~~lvv~N~s~~~~~~~~~~~~~~~~~~l~~~ 528 (551)
T PRK10933 473 TWGDYQDLLPNHPSLWCYRREWQGQTLLVIANLSREPQPWQPGQMRGNWQLLMHNY 528 (551)
T ss_pred ccceeEEeccCCCcEEEEEEEcCCcEEEEEEECCCCCeeeecCcccCCceEEeecC
Confidence 9999998764 457999998 56788899986532 1 124666777663
|
|
| >TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=454.03 Aligned_cols=330 Identities=17% Similarity=0.191 Sum_probs=243.9
Q ss_pred CceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 015125 24 GREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~ 101 (413)
...+||++..++|+..|+|+||+++|||||+||||+||||||++++ .+|||++.||++|+++||++++||+||++||+
T Consensus 92 ~~~viYE~hv~~f~~~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~ 171 (542)
T TIGR02402 92 EEAVIYELHVGTFTPEGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHG 171 (542)
T ss_pred cccEEEEEEhhhcCCCCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHH
Confidence 4479999999999999999999999999999999999999998876 57999999999999999999999999999999
Q ss_pred cCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCH---HHHHHHHHHH
Q 015125 102 HKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQH---FVRKDIIAWL 178 (413)
Q Consensus 102 ~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~---~vr~~l~~~~ 178 (413)
+||+||||+|+||++.++.... .+. +.+.. .... ...+++|+++| +||++|++++
T Consensus 172 ~Gi~VilD~V~NH~~~~~~~~~----~~~---~y~~~----~~~~-----------~wg~~~n~~~~~~~~vr~~i~~~~ 229 (542)
T TIGR02402 172 LGLGVILDVVYNHFGPEGNYLP----RYA---PYFTD----RYST-----------PWGAAINFDGPGSDEVRRYILDNA 229 (542)
T ss_pred CCCEEEEEEccCCCCCcccccc----ccC---ccccC----CCCC-----------CCCCccccCCCcHHHHHHHHHHHH
Confidence 9999999999999987653211 111 01110 0011 11357999999 9999999999
Q ss_pred HHHHhhcCCCeEeecccCCCc----HHHHHHHHHhhC---C----CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhcc
Q 015125 179 RWLRNTVGFQDFRFDFARGYS----AKYVKEYIEGAR---P----IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDG 247 (413)
Q Consensus 179 ~~w~~~~gvDGfR~D~a~~i~----~~~~~~~~~~~~---~----~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (413)
++|+++|||||||+|++++++ .+||+++.+.++ | .++|||.|.+.+. .+......
T Consensus 230 ~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~~--------------~~~~~~~~ 295 (542)
T TIGR02402 230 LYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRPVHLIAESDLNDPS--------------LVTPREDG 295 (542)
T ss_pred HHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCceEEEEEecCCCCCc--------------ccccccCC
Confidence 999999999999999998885 459988877654 3 5789998854220 00000011
Q ss_pred CCCcccccCccchHHHHHHhccch-----------hhhhhhcCC-------CCCc----c----c-ccCCcceecccCCC
Q 015125 248 TGQLSAAFDFTTKGILQEAVKGQF-----------WRLRDAQGK-------PPGV----M----G-WWPSRAVTFLDNHD 300 (413)
Q Consensus 248 ~~~~~~~~df~~~~~l~~~~~g~~-----------~~~~~~~~~-------~~~~----~----~-~~p~~~v~flenHD 300 (413)
+.++++.|+..++..++..+.|.. ..+...+.. .... . . ..+.+.++|++|||
T Consensus 296 ~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vnfl~nHD 375 (542)
T TIGR02402 296 GYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYDGEYSPFRGRPHGRPSGDLPPHRFVVFIQNHD 375 (542)
T ss_pred ccceEEEECchHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccCccccccccccCCCCCCCCCHHHEEEEccCcc
Confidence 123456666666666666554321 111111100 0000 0 0 12346899999999
Q ss_pred C-------CcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC-----------------------------------
Q 015125 301 T-------GSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD----------------------------------- 338 (413)
Q Consensus 301 ~-------~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g----------------------------------- 338 (413)
+ .|+...+ +..+.++|.+++||+||+||||||||+|
T Consensus 376 ~~gn~~~~~Rl~~~~--~~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~ 453 (542)
T TIGR02402 376 QIGNRALGERLSQLL--SPGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDP 453 (542)
T ss_pred cccccchhhhhhhcC--CHHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhccccc
Confidence 8 5777655 3478999999999999999999999964
Q ss_pred ------------------Cc-------hhHHHHHHHHHHHHHhCcccCCCCeEEEEe----cCCEEEEEE-CCEEEEEEc
Q 015125 339 ------------------WG-------DSIHNQIVKLMDVRRQQDIHSRSSIKILEA----QSNLYSAII-GDKVCMKIG 388 (413)
Q Consensus 339 ------------------w~-------~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~----~~~~~~~~r-~~~~lv~ln 388 (413)
|. .++++++|+||+|||++|+|+.++.+.+.. ++.++++.. +++++|++|
T Consensus 454 ~~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N 533 (542)
T TIGR02402 454 EDVPDPQDEETFLRSKLDWAEAESGEHARWLAFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVAVRFGRGELVLAAN 533 (542)
T ss_pred ccCCCCCchhhHhhccCCcccccccchHHHHHHHHHHHHHhccCccccCCCcccceeeecCCCCEEEEEECCCeEEEEEe
Confidence 21 248899999999999999998887554433 456777766 567888888
Q ss_pred CCC
Q 015125 389 DGS 391 (413)
Q Consensus 389 n~~ 391 (413)
.++
T Consensus 534 ~~~ 536 (542)
T TIGR02402 534 LST 536 (542)
T ss_pred CCC
Confidence 865
|
Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. |
| >TIGR02104 pulA_typeI pullulanase, type I | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-55 Score=454.71 Aligned_cols=364 Identities=17% Similarity=0.211 Sum_probs=255.1
Q ss_pred ccCCceeEEEeeecCCCC--------CccHHHHHhh-----------hhhHHHcCCCEEEcCCCCCCCC----------C
Q 015125 21 IRNGREILFQGFNWESCK--------HDWWRNLERK-----------VPDISKSGFTSVWLPPATHSFA----------P 71 (413)
Q Consensus 21 ~~~~~~~i~~~f~~~~~~--------~g~~~gi~~~-----------L~yLk~lGv~~I~L~Pi~~~~~----------~ 71 (413)
.+....+||++..++|+. .|+|.+++++ |+|||+||||+||||||+++.+ .
T Consensus 123 ~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~ 202 (605)
T TIGR02104 123 ENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYN 202 (605)
T ss_pred CChhHcEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCC
Confidence 334457999999998875 4788887765 9999999999999999998763 4
Q ss_pred CCCCcccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeec
Q 015125 72 EGYLPQNLYSLNSSYGS--------EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTS 143 (413)
Q Consensus 72 ~gY~~~d~~~id~~~Gt--------~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 143 (413)
|||++.||++++++||+ .+|||+||++||++||+||||+|+||++.... + +|.+..+.|. ..
T Consensus 203 wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~---~---~f~~~~~~~~----~~ 272 (605)
T TIGR02104 203 WGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREE---S---PFEKTVPGYY----YR 272 (605)
T ss_pred CCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCC---C---cccCCCCCee----EE
Confidence 99999999999999987 48999999999999999999999999985311 1 1111000110 00
Q ss_pred cCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC---C-CeEEEcc
Q 015125 144 CTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEY 219 (413)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~---~-~~~vgE~ 219 (413)
.+..+... .......++|+++|+||++|++++++|++++||||||+|++++++.+||+++.++++ | .+++||.
T Consensus 273 -~~~~g~~~--~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~ligE~ 349 (605)
T TIGR02104 273 -YNEDGTLS--NGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIETMNEIRKALNKIDPNILLYGEG 349 (605)
T ss_pred -ECCCCCcc--CCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHHHHHHHHHHHhhCCCeEEEEcc
Confidence 00011000 011223589999999999999999999999999999999999999999999988765 3 6789999
Q ss_pred cCCCCCCCCCCCCccchhhHhHhhhhccC-CCcccccCccchHHHHHHh---------ccc---hhhhhhhcCCCCC---
Q 015125 220 WDSCNYNSHGLDYNQDSHRQRIINWIDGT-GQLSAAFDFTTKGILQEAV---------KGQ---FWRLRDAQGKPPG--- 283 (413)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~df~~~~~l~~~~---------~g~---~~~~~~~~~~~~~--- 283 (413)
|...+ .... .......+.. -...+.|++.++..++... .|. ...+...+.....
T Consensus 350 w~~~~------~~~~----~~~~~~~~~~~~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~ 419 (605)
T TIGR02104 350 WDLGT------PLPP----EQKATKANAYQMPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDA 419 (605)
T ss_pred CCCCC------Ccch----hhhhhhhccCCCCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhcc
Confidence 97532 0000 0000000000 0124678888877776321 222 1223322221100
Q ss_pred --cccccCCcceecccCCCCCcCCCCCC----C-----ChhHHHHHHHHHhcCCCeeEEecCcccC--------------
Q 015125 284 --VMGWWPSRAVTFLDNHDTGSTQAHWP----F-----PSNHIMEGYAYILMHPGIPSVFYDHFYD-------------- 338 (413)
Q Consensus 284 --~~~~~p~~~v~flenHD~~R~~~~~~----~-----~~~~~~la~a~ll~~pGiP~Iy~G~E~g-------------- 338 (413)
.....|..+|+|++|||+.|+...+. . ...++++|++++||+||+||||||||+|
T Consensus 420 ~~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g~~n~y~~~d 499 (605)
T TIGR02104 420 VKPSALDPSQSINYVECHDNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQGDENSYNSPD 499 (605)
T ss_pred cccccCChhheEEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCCCCCCccCCC
Confidence 01224568899999999998744321 1 1357899999999999999999999974
Q ss_pred ------Cc-----hhHHHHHHHHHHHHHhCcccCCCCeE-------EEEe-cCCEEEEEEC--------CEEEEEEcCCC
Q 015125 339 ------WG-----DSIHNQIVKLMDVRRQQDIHSRSSIK-------ILEA-QSNLYSAIIG--------DKVCMKIGDGS 391 (413)
Q Consensus 339 ------w~-----~~l~~~i~~L~~lR~~~p~l~~G~~~-------~~~~-~~~~~~~~r~--------~~~lv~lnn~~ 391 (413)
|+ .++++++|+|++||+++|+|+.|+.. ++.. ++.+++|.|. +.++|++|.+.
T Consensus 500 ~~~~ldW~~~~~~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~~~~~~~~llVv~N~s~ 579 (605)
T TIGR02104 500 SINQLDWDRKATFKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHANGDPWKDIIVIHNANP 579 (605)
T ss_pred cccccCccccccchHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCcCCCCcCeEEEEEeCCC
Confidence 32 36899999999999999999998753 2322 3579999882 25788898864
Q ss_pred CC-----CCCCCcEEeeeCCc
Q 015125 392 WC-----PAGKEWTLATSGHK 407 (413)
Q Consensus 392 ~~-----~~~~~~~~~~s~~~ 407 (413)
.. |..+.|+.++++..
T Consensus 580 ~~~~v~lp~~~~w~~~~~~~~ 600 (605)
T TIGR02104 580 EPVDIQLPSDGTWNVVVDNKN 600 (605)
T ss_pred CCeEEECCCCCCEEEEECCCc
Confidence 32 44578999888754
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases. |
| >PRK12313 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-54 Score=451.11 Aligned_cols=353 Identities=15% Similarity=0.194 Sum_probs=249.5
Q ss_pred CceeEEEeeecCCCCC-----ccHHHHHhhh-hhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHH
Q 015125 24 GREILFQGFNWESCKH-----DWWRNLERKV-PDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKAL 95 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~-----g~~~gi~~~L-~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~L 95 (413)
...+||++..+++..+ |+|++|+++| ||||+||||+||||||++++ .+|||++.|||+|+|+|||+++||+|
T Consensus 146 ~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~l 225 (633)
T PRK12313 146 RPISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYL 225 (633)
T ss_pred CCceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHH
Confidence 3368999999987765 7999999995 99999999999999999987 57999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHH
Q 015125 96 LHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDII 175 (413)
Q Consensus 96 v~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~ 175 (413)
|++||++||+||||+|+||++.++... ..|.+ .....+.++.. .....| +.++||+.||+||++|+
T Consensus 226 v~~~H~~Gi~VilD~V~nH~~~~~~~~----~~~~~-------~~~~~~~~~~~--~~~~~w-~~~~~n~~~~~vr~~l~ 291 (633)
T PRK12313 226 VDALHQNGIGVILDWVPGHFPKDDDGL----AYFDG-------TPLYEYQDPRR--AENPDW-GALNFDLGKNEVRSFLI 291 (633)
T ss_pred HHHHHHCCCEEEEEECCCCCCCCcccc----cccCC-------CcceeecCCCC--CcCCCC-CCcccCCCCHHHHHHHH
Confidence 999999999999999999999865321 11211 00011111000 000012 24689999999999999
Q ss_pred HHHHHHHhhcCCCeEeecccCCC-----------------------cHHHHHHHHHhhC---C-CeEEEcccCCCCCCCC
Q 015125 176 AWLRWLRNTVGFQDFRFDFARGY-----------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSH 228 (413)
Q Consensus 176 ~~~~~w~~~~gvDGfR~D~a~~i-----------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~ 228 (413)
+++++|+++|||||||+|++.++ +.+||+++.+.++ | .++|||.+...+
T Consensus 292 ~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~---- 367 (633)
T PRK12313 292 SSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWP---- 367 (633)
T ss_pred HHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCc----
Confidence 99999999999999999988644 2579999988764 4 778999775421
Q ss_pred CCCCccchhhHhHhh-hhccCCCcccccCccchHHHHHHhccc-hhhhhhhcCCC-CCcccccCCcceecccCCCCC---
Q 015125 229 GLDYNQDSHRQRIIN-WIDGTGQLSAAFDFTTKGILQEAVKGQ-FWRLRDAQGKP-PGVMGWWPSRAVTFLDNHDTG--- 302 (413)
Q Consensus 229 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~df~~~~~l~~~~~g~-~~~~~~~~~~~-~~~~~~~p~~~v~flenHD~~--- 302 (413)
.+.. ....+-+++..++..+...+...+..+ ..+-. ..... ........ ...++++|||+.
T Consensus 368 -----------~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-e~~~l~~sHD~~~~g 434 (633)
T PRK12313 368 -----------KVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIYRKY-HHNLLTFSFMYAFS-ENFVLPFSHDEVVHG 434 (633)
T ss_pred -----------cccccccCCCCCcCceeCcHHHHHHHHHhhhCcccccc-ccccchHHHhhhhh-cccccCCCCcccccC
Confidence 1111 111222455666665555555554221 11000 00000 00000001 122466899994
Q ss_pred --cCCCCCCCCh----hHHHHHHHHHhcCCCeeEEecCcccC------------Cc-------hhHHHHHHHHHHHHHhC
Q 015125 303 --STQAHWPFPS----NHIMEGYAYILMHPGIPSVFYDHFYD------------WG-------DSIHNQIVKLMDVRRQQ 357 (413)
Q Consensus 303 --R~~~~~~~~~----~~~~la~a~ll~~pGiP~Iy~G~E~g------------w~-------~~l~~~i~~L~~lR~~~ 357 (413)
|+...+..+. .++|++++++||+||+||||||+|+| |. +++.+++|+|++||+++
T Consensus 435 ~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~r~Li~LRr~~ 514 (633)
T PRK12313 435 KKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWKHDESLEWHLLEDPMNAGMQRFTSDLNQLYKDE 514 (633)
T ss_pred CccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccCCccCCCCccccCChhHHHHHHHHHHHHHHHHhC
Confidence 5555544333 56899999999999999999999986 42 36999999999999999
Q ss_pred cccCC-----CCeEEEEec---CCEEEEEE-C----CEEEEEEcCCCC--------CCCCCCcEEeeeCCc
Q 015125 358 DIHSR-----SSIKILEAQ---SNLYSAII-G----DKVCMKIGDGSW--------CPAGKEWTLATSGHK 407 (413)
Q Consensus 358 p~l~~-----G~~~~~~~~---~~~~~~~r-~----~~~lv~lnn~~~--------~~~~~~~~~~~s~~~ 407 (413)
|+|+. ++++.+..+ +++++|.| . +.++||+|.++. .|.++.|+++|+...
T Consensus 515 paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~~~~~~y~i~~p~~g~~~~ilnsd~ 585 (633)
T PRK12313 515 PALWELDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTPVEREDYRIGVPVAGIYEEILNTDS 585 (633)
T ss_pred hHhhcccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCCCcccceeECCCCCCeEEEEEcCCc
Confidence 99974 456766653 36999998 2 458888998642 244578999987654
|
|
| >TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=444.79 Aligned_cols=353 Identities=13% Similarity=0.148 Sum_probs=250.7
Q ss_pred eeEEEeeecCCCCCccHHHHHhhh-hhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015125 26 EILFQGFNWESCKHDWWRNLERKV-PDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L-~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~ 102 (413)
.+||++-.+++...|+|++|+++| ||||+||||+||||||++++ .+|||+++|||+|+++|||+++||+||++||++
T Consensus 139 ~~iYe~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~ 218 (613)
T TIGR01515 139 VSIYELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQA 218 (613)
T ss_pred ceEEEEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHC
Confidence 579999999999999999999997 99999999999999999986 479999999999999999999999999999999
Q ss_pred CCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHH
Q 015125 103 KVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLR 182 (413)
Q Consensus 103 Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~ 182 (413)
||+||||+|+||++.++... ..|.+.+ .|. ..++.. ... ...+.+++|+++|+||++|++++++|+
T Consensus 219 Gi~VilD~V~NH~~~~~~~~----~~~~~~~-~y~------~~~~~~--~~~-~~w~~~~~~~~~~~Vr~~l~~~~~~W~ 284 (613)
T TIGR01515 219 GIGVILDWVPGHFPKDDHGL----AEFDGTP-LYE------HKDPRD--GEH-WDWGTLIFDYGRPEVRNFLVANALYWA 284 (613)
T ss_pred CCEEEEEecccCcCCccchh----hccCCCc-cee------ccCCcc--CcC-CCCCCceecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999865321 1121100 010 000000 000 112467899999999999999999999
Q ss_pred hhcCCCeEeecccCCC------------------------cHHHHHHHHHhhC---C-CeEEEcccCCCCCCCCCCCCcc
Q 015125 183 NTVGFQDFRFDFARGY------------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLDYNQ 234 (413)
Q Consensus 183 ~~~gvDGfR~D~a~~i------------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~~~~ 234 (413)
++|||||||+|+++++ ..+||+++.+.++ | +++|||.+...+
T Consensus 285 ~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~---------- 354 (613)
T TIGR01515 285 EFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWP---------- 354 (613)
T ss_pred HHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCc----------
Confidence 9999999999998654 2579999988765 4 788999764321
Q ss_pred chhhHhHhhhhccCCCcccccCccchHHHHHHhccc-hhhhhhhcCCCCCcccccCCcceecccCCCCC-----cCCCCC
Q 015125 235 DSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ-FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG-----STQAHW 308 (413)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~-~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~-----R~~~~~ 308 (413)
.......+.+-+++..+++.++..+..++..+ ..+................ ....+++|||+. |+...+
T Consensus 355 ----~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~sHD~~~~g~~~i~~~~ 429 (613)
T TIGR01515 355 ----GVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVERQYHHQLITFSMLYAFS-ENFVLPLSHDEVVHGKKSLLNKM 429 (613)
T ss_pred ----cccccccCCcCCcCeeeCchHHHHHHHHHhhChhhHhhccccccHHHHHHhh-hccccCCCCCCcccCcccHHHhC
Confidence 01111222233567777777766666665222 1111100000000000001 122357889993 444444
Q ss_pred CCC----hhHHHHHHHHHhcCCCeeEEecCcccC------------Cc-------hhHHHHHHHHHHHHHhCcccCCCC-
Q 015125 309 PFP----SNHIMEGYAYILMHPGIPSVFYDHFYD------------WG-------DSIHNQIVKLMDVRRQQDIHSRSS- 364 (413)
Q Consensus 309 ~~~----~~~~~la~a~ll~~pGiP~Iy~G~E~g------------w~-------~~l~~~i~~L~~lR~~~p~l~~G~- 364 (413)
..+ ..++|++++++||+||+||||||+|+| |. .++.+++|+|++||+++|+|..|+
T Consensus 430 ~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~paL~~~~~ 509 (613)
T TIGR01515 430 PGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWNDTEQLDWHLLSFPMHQGVSVFVRDLNRTYQKSKALYEHDF 509 (613)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCCCCccCCCccccCcccHHHHHHHHHHHHHHhhCHHhhccCC
Confidence 322 257899999999999999999999985 32 368999999999999999997654
Q ss_pred ----eEEEEe---cCCEEEEEEC-----CEEEEEEcCCCCC--------CCCCCcEEeeeCCc
Q 015125 365 ----IKILEA---QSNLYSAIIG-----DKVCMKIGDGSWC--------PAGKEWTLATSGHK 407 (413)
Q Consensus 365 ----~~~~~~---~~~~~~~~r~-----~~~lv~lnn~~~~--------~~~~~~~~~~s~~~ 407 (413)
++.+.. ++++++|.|. +.++|++|.++.. |..+.|+++|+...
T Consensus 510 ~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~~~~~~Y~i~~p~~g~~~~il~Sd~ 572 (613)
T TIGR01515 510 DPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTPVVRHQYRVGVPQPGQYREVLNSDS 572 (613)
T ss_pred CCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCCCCccceEeCCCCCCeEEEEEeCCh
Confidence 444543 3569999882 3588999996531 33578999887553
|
A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here. |
| >PRK05402 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-52 Score=440.96 Aligned_cols=354 Identities=15% Similarity=0.210 Sum_probs=245.0
Q ss_pred ceeEEEeeecCCCCC------ccHHHHHhhh-hhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHH
Q 015125 25 REILFQGFNWESCKH------DWWRNLERKV-PDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKAL 95 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~------g~~~gi~~~L-~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~L 95 (413)
..+||++..+++..+ |+|++|+++| ||||+||||+||||||++++ .+|||++.||++|+|+|||+++||+|
T Consensus 241 ~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~l 320 (726)
T PRK05402 241 PISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYF 320 (726)
T ss_pred CcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHH
Confidence 368999999998764 7999999996 99999999999999999876 47999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHH
Q 015125 96 LHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDII 175 (413)
Q Consensus 96 v~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~ 175 (413)
|++||++||+||||+|+||++.++... ..|.+.+....+.. ..++ ...| +..++|+.+|+||++|+
T Consensus 321 V~~~H~~Gi~VilD~V~NH~~~~~~~~----~~~~~~~~y~~~~~----~~~~-----~~~w-~~~~~n~~~~~v~~~l~ 386 (726)
T PRK05402 321 VDACHQAGIGVILDWVPAHFPKDAHGL----ARFDGTALYEHADP----REGE-----HPDW-GTLIFNYGRNEVRNFLV 386 (726)
T ss_pred HHHHHHCCCEEEEEECCCCCCCCccch----hccCCCcceeccCC----cCCc-----cCCC-CCccccCCCHHHHHHHH
Confidence 999999999999999999998865421 11211000001000 0000 0112 22478999999999999
Q ss_pred HHHHHHHhhcCCCeEeecccCCC------------------------cHHHHHHHHHhhC---C-CeEEEcccCCCCCCC
Q 015125 176 AWLRWLRNTVGFQDFRFDFARGY------------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNS 227 (413)
Q Consensus 176 ~~~~~w~~~~gvDGfR~D~a~~i------------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~ 227 (413)
+++++|++++||||||+|++.++ ..+||+++++.++ | +++|||.+...+.
T Consensus 387 ~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~-- 464 (726)
T PRK05402 387 ANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPG-- 464 (726)
T ss_pred HHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcC--
Confidence 99999999999999999987654 3579999988765 4 7789995543110
Q ss_pred CCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc-hhhhhhhcCCCCCcccccCCcceecccCCCCCc---
Q 015125 228 HGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ-FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGS--- 303 (413)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~-~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R--- 303 (413)
.......++.+++..+++.+...+...+..+ ..+....-......+.... ...++++|||+.+
T Consensus 465 ------------~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~l~~sHD~~~~g~ 531 (726)
T PRK05402 465 ------------VTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFSLLYAYS-ENFVLPLSHDEVVHGK 531 (726)
T ss_pred ------------ccccccCCCCCCCceecCCcchHHHHHHhhCcccccccccchhHHHhHhhh-ccccCCCCCceeeeCc
Confidence 0001111122355566655544444443211 1100000000000000011 1234678999964
Q ss_pred --CCCCCCCC----hhHHHHHHHHHhcCCCeeEEecCcccC------------Cc-------hhHHHHHHHHHHHHHhCc
Q 015125 304 --TQAHWPFP----SNHIMEGYAYILMHPGIPSVFYDHFYD------------WG-------DSIHNQIVKLMDVRRQQD 358 (413)
Q Consensus 304 --~~~~~~~~----~~~~~la~a~ll~~pGiP~Iy~G~E~g------------w~-------~~l~~~i~~L~~lR~~~p 358 (413)
+...+..+ ..++|++++++||+||+||||||+|+| |+ .++.+++|+|++||+++|
T Consensus 532 ~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~~ 611 (726)
T PRK05402 532 GSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWNHDASLDWHLLDFPWHRGVQRLVRDLNHLYRAEP 611 (726)
T ss_pred ccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCCccCcCCccccCCcchHHHHHHHHHHHHHHHhCh
Confidence 33333322 246889999999999999999999975 43 369999999999999999
Q ss_pred ccCCC-----CeEEEEe---cCCEEEEEEC-----CEEEEEEcCCCC--------CCCCCCcEEeeeCCc
Q 015125 359 IHSRS-----SIKILEA---QSNLYSAIIG-----DKVCMKIGDGSW--------CPAGKEWTLATSGHK 407 (413)
Q Consensus 359 ~l~~G-----~~~~~~~---~~~~~~~~r~-----~~~lv~lnn~~~--------~~~~~~~~~~~s~~~ 407 (413)
+|+.| .++.+.. ++++++|.|. ++++||+|.++. .|.++.|++++++..
T Consensus 612 aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv~N~~~~~~~~y~i~~p~~g~~~~ilnsd~ 681 (726)
T PRK05402 612 ALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVVCNFTPVPRHDYRLGVPQAGRWREVLNTDA 681 (726)
T ss_pred hhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEEEeCCCCcccceEECCCCCCeEEEEEcCcc
Confidence 99865 4444543 3479999982 468899998642 245679999998764
|
|
| >PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-54 Score=416.17 Aligned_cols=284 Identities=22% Similarity=0.370 Sum_probs=202.2
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
|||+||++||||||+||||+|||+||++++ ++|||+|.||++|+|+|||++||++||++||++||+||+|+|+||++..
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~ 80 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDD 80 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccc
Confidence 799999999999999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCC----------CcccccCCCCCCCCCCCeeccC--CCCCCCc-C--CCCCCCCCcCCCCCHHHHHHHHHHHHHHHh
Q 015125 119 TQGHG----------GKYNRYDGIPLSWDEHAVTSCT--GGLGNGS-T--GDNFHGVPNIDHTQHFVRKDIIAWLRWLRN 183 (413)
Q Consensus 119 ~~~~~----------~~y~~~~~~~~~~~~~~~~~~~--~~~~~~~-~--~~~~~~~~dln~~~~~vr~~l~~~~~~w~~ 183 (413)
+++++ ..|..+.+. ....+....... ..+.... . .+.+..+|+||++||+||+++++++++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~- 158 (316)
T PF00128_consen 81 HPWFQDSLNYFDNPYSDYYYWRDG-EGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWI- 158 (316)
T ss_dssp SHHHHHHHTHTTSTTGTTBEEESB-TSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHH-
T ss_pred cccccccccccccccccceeeccc-ccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchh-
Confidence 98632 112111110 000011100000 1111111 1 24578899999999999999999999999
Q ss_pred hcCCCeEeecccCCCcHHHHHHHHHhhC----CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhc-cCCCcccccCcc
Q 015125 184 TVGFQDFRFDFARGYSAKYVKEYIEGAR----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWID-GTGQLSAAFDFT 258 (413)
Q Consensus 184 ~~gvDGfR~D~a~~i~~~~~~~~~~~~~----~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~df~ 258 (413)
+.||||||+|+|++++.++|+++.++++ ..+++||+|.... ..+..+.. ........+++.
T Consensus 159 ~~giDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 224 (316)
T PF00128_consen 159 EEGIDGFRLDAAKHIPKEFWKEFRDEVKEEKPDFFLIGEVWGGDN--------------EDLRQYAYDGYFDLDSVFDFP 224 (316)
T ss_dssp HTTESEEEETTGGGSSHHHHHHHHHHHHHHHTTSEEEEEESSSSH--------------HHHHHHHHHGTTSHSEEEHHH
T ss_pred hceEeEEEEccccccchhhHHHHhhhhhhhccccceeeeeccCCc--------------cccchhhhccccccchhhccc
Confidence 7779999999999999999999998876 3788999997621 12222221 111223345555
Q ss_pred chHHHHHHh----ccc--hhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEe
Q 015125 259 TKGILQEAV----KGQ--FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVF 332 (413)
Q Consensus 259 ~~~~l~~~~----~g~--~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy 332 (413)
......... .++ ...+............ .+...++|++|||++|+.+.......++++|++++||+||+||||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~ll~~pG~P~iy 303 (316)
T PF00128_consen 225 DYGLRSSFFDFWRHGDGDASDLANWLSSWQSSYP-DPYRAVNFLENHDTPRFASRFGNNRDRLKLALAFLLTSPGIPMIY 303 (316)
T ss_dssp HHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHST-TGGGEEEESSHTTSSTHHHHTTTHHHHHHHHHHHHHHSSSEEEEE
T ss_pred ccccccchhhhhccccchhhhhhhhhhhhhhhhc-ccceeeecccccccccchhhhcccchHHHHHHHHHHcCCCccEEE
Confidence 433333222 111 1122211110000011 134789999999999988877644448999999999999999999
Q ss_pred cCcccCCc
Q 015125 333 YDHFYDWG 340 (413)
Q Consensus 333 ~G~E~gw~ 340 (413)
||||+|..
T Consensus 304 ~G~E~g~~ 311 (316)
T PF00128_consen 304 YGDEIGMT 311 (316)
T ss_dssp TTGGGTBB
T ss_pred eChhccCC
Confidence 99999854
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A .... |
| >TIGR02100 glgX_debranch glycogen debranching enzyme GlgX | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=429.99 Aligned_cols=318 Identities=15% Similarity=0.219 Sum_probs=229.5
Q ss_pred CceeEEEeeecCCCCC---------ccHHHHHhh--hhhHHHcCCCEEEcCCCCCCC-----------CCCCCCcccCCC
Q 015125 24 GREILFQGFNWESCKH---------DWWRNLERK--VPDISKSGFTSVWLPPATHSF-----------APEGYLPQNLYS 81 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~---------g~~~gi~~~--L~yLk~lGv~~I~L~Pi~~~~-----------~~~gY~~~d~~~ 81 (413)
...|||++..++|+.. |+|+||+++ |+|||+||||+||||||+++. .+|||+|.|||+
T Consensus 154 ~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a 233 (688)
T TIGR02100 154 EDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFA 233 (688)
T ss_pred cccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccc
Confidence 4479999999998862 899999985 999999999999999999874 269999999999
Q ss_pred CCCCC---CCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCC-CcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC
Q 015125 82 LNSSY---GSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG-GKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF 157 (413)
Q Consensus 82 id~~~---Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
|+++| |+.+|||+||++||++||+||||+|+||++..+.... ..+..+.. ..|... ..+..+ ......
T Consensus 234 ~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~--~~yy~~----~~~~~~--~~~~~~ 305 (688)
T TIGR02100 234 PEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDN--ASYYRL----QPDDKR--YYINDT 305 (688)
T ss_pred cChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCC--CcceEe----cCCCCc--eecCCC
Confidence 99999 6789999999999999999999999999998654211 11111110 011100 000000 001112
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc---------HHHHHHHHHh-hCC-CeEEEcccCCCCCC
Q 015125 158 HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS---------AKYVKEYIEG-ARP-IFSVGEYWDSCNYN 226 (413)
Q Consensus 158 ~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~---------~~~~~~~~~~-~~~-~~~vgE~~~~~~~~ 226 (413)
...+++|+++|+||++|++++++|++++||||||+|++..+. ..+++++.+. +.+ +++|||.|...+
T Consensus 306 g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~~~ligE~W~~~~-- 383 (688)
T TIGR02100 306 GTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQVKLIAEPWDIGP-- 383 (688)
T ss_pred CccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCCeEEEEeeecCCC--
Confidence 346789999999999999999999999999999999999875 3577777664 233 678999997521
Q ss_pred CCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc---hhhhhhhcCCCCCccc---ccCCcceecccCCC
Q 015125 227 SHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVMG---WWPSRAVTFLDNHD 300 (413)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~---~~~~~~~~~~~~~~~~---~~p~~~v~flenHD 300 (413)
..+. +..+ ....+.|+..++..++..++|+ ...+...+........ ..|..+|||+++||
T Consensus 384 ---~~~~-------~~~~----~~~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~~HD 449 (688)
T TIGR02100 384 ---GGYQ-------VGNF----PPGWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHNGRRPWASINFVTAHD 449 (688)
T ss_pred ---Cccc-------ccCC----CCceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCHhhccccCCCcCEEEEEEeCCC
Confidence 0000 0000 0123667888888888887654 2344443332111111 23568999999999
Q ss_pred CCcCCCCC---------C-C---------------------C-------hhHHHHHHHHHhcCCCeeEEecCcccC----
Q 015125 301 TGSTQAHW---------P-F---------------------P-------SNHIMEGYAYILMHPGIPSVFYDHFYD---- 338 (413)
Q Consensus 301 ~~R~~~~~---------~-~---------------------~-------~~~~~la~a~ll~~pGiP~Iy~G~E~g---- 338 (413)
+.++...+ + + . ..++|++++++||+||+||||||||++
T Consensus 450 ~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~GdE~g~t~~ 529 (688)
T TIGR02100 450 GFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLAGDEFGRTQQ 529 (688)
T ss_pred CchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeeecHhhccCCC
Confidence 97733210 0 0 0 246899999999999999999999974
Q ss_pred ----------------Cc-----hhHHHHHHHHHHHHHhCcccCCCCe
Q 015125 339 ----------------WG-----DSIHNQIVKLMDVRRQQDIHSRSSI 365 (413)
Q Consensus 339 ----------------w~-----~~l~~~i~~L~~lR~~~p~l~~G~~ 365 (413)
|+ .+++.++|+||+|||++|+|+.+.+
T Consensus 530 G~~n~y~~~~~~~~~dW~~~~~~~~l~~~~k~Li~lRk~~~~l~~~~~ 577 (688)
T TIGR02100 530 GNNNAYCQDNEIGWVDWSLDEGDDELLAFTKKLIALRKAHPVLRRERF 577 (688)
T ss_pred CCCCCccCCCcccccCcccccccHHHHHHHHHHHHHHHhCchhccccc
Confidence 43 4799999999999999999998754
|
This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. |
| >PRK14706 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=421.60 Aligned_cols=351 Identities=15% Similarity=0.139 Sum_probs=248.7
Q ss_pred eeEEEeeecCCCCC-----ccHHHHHhhh-hhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 015125 26 EILFQGFNWESCKH-----DWWRNLERKV-PDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLH 97 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-----g~~~gi~~~L-~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~ 97 (413)
.+||++-..++... |+|++++++| +|||+||||+|+||||.+++ .+|||++.+||+++++||++++||+||+
T Consensus 145 ~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~ 224 (639)
T PRK14706 145 ISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVN 224 (639)
T ss_pred cEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHH
Confidence 68999999988653 4899999997 89999999999999999875 4799999999999999999999999999
Q ss_pred HHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHH
Q 015125 98 KMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAW 177 (413)
Q Consensus 98 ~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~ 177 (413)
+||++||+||||+|+||++.+..+. ..|.+ .+...+.++.. .....|.. ..+|+.+|+||++|+++
T Consensus 225 ~~H~~gi~VilD~v~nH~~~~~~~l----~~~dg-------~~~y~~~~~~~--g~~~~w~~-~~~~~~~~eVr~~l~~~ 290 (639)
T PRK14706 225 HLHGLGIGVILDWVPGHFPTDESGL----AHFDG-------GPLYEYADPRK--GYHYDWNT-YIFDYGRNEVVMFLIGS 290 (639)
T ss_pred HHHHCCCEEEEEecccccCcchhhh----hccCC-------CcceeccCCcC--CcCCCCCC-cccCCCCHHHHHHHHHH
Confidence 9999999999999999999865321 01111 11111111000 00111222 24899999999999999
Q ss_pred HHHHHhhcCCCeEeecccCCC----------------------cHHHHHHHHHhhC---C-CeEEEcccCCCCCCCCCCC
Q 015125 178 LRWLRNTVGFQDFRFDFARGY----------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLD 231 (413)
Q Consensus 178 ~~~w~~~~gvDGfR~D~a~~i----------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~ 231 (413)
+++|+++|||||||+|++.+| ...||+++.+.++ | +++|||.|.+.+
T Consensus 291 ~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~------- 363 (639)
T PRK14706 291 ALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFP------- 363 (639)
T ss_pred HHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCc-------
Confidence 999999999999999998886 2478998887765 4 789999886522
Q ss_pred CccchhhHhHhhhhccCCCcccccCccchHHHHHHhc-cchhhhhhhcCCCCCccc-ccCCcceecccCCCCCcCCC--C
Q 015125 232 YNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK-GQFWRLRDAQGKPPGVMG-WWPSRAVTFLDNHDTGSTQA--H 307 (413)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~-g~~~~~~~~~~~~~~~~~-~~p~~~v~flenHD~~R~~~--~ 307 (413)
.+......+-+++..++..+...+.+.+. ...++... ... .+... ........+++|||+.+... .
T Consensus 364 --------~v~~~~~~G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~-~~~-lt~~~~y~~~e~~il~~SHDev~~~k~sl 433 (639)
T PRK14706 364 --------GVTVPTPYGLGFDYKWAMGWMNDTLAYFEQDPLWRKYH-HHK-LTFFNVYRTSENYVLAISHDEVVHLKKSM 433 (639)
T ss_pred --------CcccccCCCCccccEeccHHHHHHHHHhccCchhhhhc-hhc-cchhhhhhccccEecCCCCccccCCccch
Confidence 11111112335667777666655555442 22222111 100 01101 11111223789999988532 1
Q ss_pred ---CCCC----hhHHHHHHHHHhcCCCeeEEecCcccC------------Cc-------hhHHHHHHHHHHHHHhCcccC
Q 015125 308 ---WPFP----SNHIMEGYAYILMHPGIPSVFYDHFYD------------WG-------DSIHNQIVKLMDVRRQQDIHS 361 (413)
Q Consensus 308 ---~~~~----~~~~~la~a~ll~~pGiP~Iy~G~E~g------------w~-------~~l~~~i~~L~~lR~~~p~l~ 361 (413)
...+ ..++++++++++|+||+||||||+|+| |. +.+.+++|+|++||+++|+|.
T Consensus 434 ~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew~~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL~ 513 (639)
T PRK14706 434 VMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEWNHDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDWH 513 (639)
T ss_pred HhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 1111 246899999999999999999999987 32 248899999999999999998
Q ss_pred CCC-----eEEEEe---cCCEEEEEEC-----CEEEEEEcCCCC--------CCCCCCcEEeeeCCc
Q 015125 362 RSS-----IKILEA---QSNLYSAIIG-----DKVCMKIGDGSW--------CPAGKEWTLATSGHK 407 (413)
Q Consensus 362 ~G~-----~~~~~~---~~~~~~~~r~-----~~~lv~lnn~~~--------~~~~~~~~~~~s~~~ 407 (413)
.|+ ++.+.. ++++++|.|. +.++||+|.++. +|..+.|+++|+...
T Consensus 514 ~gd~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~~~~~~y~ig~p~~g~~~~i~nsd~ 580 (639)
T PRK14706 514 RGDKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTPVYREQYRIGVPQGGEYRVLLSTDD 580 (639)
T ss_pred hCCCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCCCCcCCeEECCCCCCeEEEEEcCCc
Confidence 775 444433 3579999992 238899999663 256789999987653
|
|
| >PRK03705 glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=421.64 Aligned_cols=357 Identities=16% Similarity=0.232 Sum_probs=245.1
Q ss_pred cccccCCceeEEEeeecCCCC---------CccHHHHHh--hhhhHHHcCCCEEEcCCCCCCC-----------CCCCCC
Q 015125 18 GAVIRNGREILFQGFNWESCK---------HDWWRNLER--KVPDISKSGFTSVWLPPATHSF-----------APEGYL 75 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~---------~g~~~gi~~--~L~yLk~lGv~~I~L~Pi~~~~-----------~~~gY~ 75 (413)
+|..+....|||++..++|+. .|+|+++++ +|+|||+||||+||||||+++. .+|||+
T Consensus 143 ~p~~~~~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd 222 (658)
T PRK03705 143 PPRTPWGSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYN 222 (658)
T ss_pred CCCCCccccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcc
Confidence 344444457999999999875 289999997 5999999999999999999864 469999
Q ss_pred cccCCCCCCCCCCH-----HHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCC---CCCCCCCCCeeccCCC
Q 015125 76 PQNLYSLNSSYGSE-----HLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG---IPLSWDEHAVTSCTGG 147 (413)
Q Consensus 76 ~~d~~~id~~~Gt~-----~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~---~~~~~~~~~~~~~~~~ 147 (413)
|.|||+|+++|||. +|||+||++||++||+||||+|+||++.... .+.+..+.+ ....|.. .++
T Consensus 223 ~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~--~~~~~~~~~~d~~~yy~~~------~~g 294 (658)
T PRK03705 223 PLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELDL--DGPTLSLRGIDNRSYYWIR------EDG 294 (658)
T ss_pred cccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCC--CCcchhcccCCCccceEEC------CCC
Confidence 99999999999995 7999999999999999999999999997421 111111111 0011111 011
Q ss_pred CCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc--HHHHHH--HHHhhC------CCeEEE
Q 015125 148 LGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS--AKYVKE--YIEGAR------PIFSVG 217 (413)
Q Consensus 148 ~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~--~~~~~~--~~~~~~------~~~~vg 217 (413)
....+ ....++||+++|+||++|++++++|+++|||||||+|+|.++. +.|++. +.++++ .+.++|
T Consensus 295 ~~~~~----~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~~~~lig 370 (658)
T PRK03705 295 DYHNW----TGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLSQVKLIA 370 (658)
T ss_pred CcCCC----CCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCccccceEEEE
Confidence 10111 2345799999999999999999999999999999999999886 234432 334333 367899
Q ss_pred cccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc---hhhhhhhcCCCCCc---ccccCCc
Q 015125 218 EYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGV---MGWWPSR 291 (413)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~---~~~~~~~~~~~~~~---~~~~p~~ 291 (413)
|.|...+ ..|. +..+ ....+.|+..++..++..+.+. ...+...+...... ....|.+
T Consensus 371 E~Wd~~~-----~~~~-------~g~~----~~~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~~p~~ 434 (658)
T PRK03705 371 EPWDIGP-----GGYQ-------VGNF----PPPFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGRLPSA 434 (658)
T ss_pred ecccCCC-----Chhh-------hcCC----CcceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCCCCCe
Confidence 9997521 0000 0000 1123577878888888776322 22222222211111 1224678
Q ss_pred ceecccCCCCCcCCCCC---------C-C----------------------------ChhHHHHHHHHHhcCCCeeEEec
Q 015125 292 AVTFLDNHDTGSTQAHW---------P-F----------------------------PSNHIMEGYAYILMHPGIPSVFY 333 (413)
Q Consensus 292 ~v~flenHD~~R~~~~~---------~-~----------------------------~~~~~~la~a~ll~~pGiP~Iy~ 333 (413)
+|||+++||+.++...+ + + ...++|+++++||+++|+||||+
T Consensus 435 siNyv~~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~ 514 (658)
T PRK03705 435 SINLVTAHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLA 514 (658)
T ss_pred EEEEEEeCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHh
Confidence 99999999997543211 0 0 01357899999999999999999
Q ss_pred CcccC--------------------Cc---hhHHHHHHHHHHHHHhCcccCCCCe--------EEEEec-----------
Q 015125 334 DHFYD--------------------WG---DSIHNQIVKLMDVRRQQDIHSRSSI--------KILEAQ----------- 371 (413)
Q Consensus 334 G~E~g--------------------w~---~~l~~~i~~L~~lR~~~p~l~~G~~--------~~~~~~----------- 371 (413)
|||++ |+ .++++++|+||+|||++|+|+..++ +.+..+
T Consensus 515 GdE~grtq~G~nN~y~~~~~i~~~dW~~~~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~ 594 (658)
T PRK03705 515 GDEHGHSQHGNNNAYCQDNALTWLDWSQADRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQQ 594 (658)
T ss_pred hHHhccCCCCCCCCccCCCCccccccchhhhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhCC
Confidence 99974 33 3699999999999999999986554 222211
Q ss_pred -CCEEEEEECCEEEEEEcCCCCC-----CCCCCcEEee
Q 015125 372 -SNLYSAIIGDKVCMKIGDGSWC-----PAGKEWTLAT 403 (413)
Q Consensus 372 -~~~~~~~r~~~~lv~lnn~~~~-----~~~~~~~~~~ 403 (413)
...+++...+.++|++|-.... |. +.|+.++
T Consensus 595 ~~~~~~~~~~~~~~v~~N~~~~~~~~~lp~-~~w~~~~ 631 (658)
T PRK03705 595 GPKQLQILLSDRWLIAINATLEVTEIVLPE-GEWHAIP 631 (658)
T ss_pred cceEEEEEECCCEEEEECCCCCCeEEECCC-cceEEEE
Confidence 1345555566788888875432 43 5788884
|
|
| >PRK12568 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=402.90 Aligned_cols=356 Identities=14% Similarity=0.162 Sum_probs=251.8
Q ss_pred cCCceeEEEeeecCCCCC-----ccHHHHHhh-hhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHH
Q 015125 22 RNGREILFQGFNWESCKH-----DWWRNLERK-VPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLK 93 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~~-----g~~~gi~~~-L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~ 93 (413)
+....+||++-..++..+ ++|++++++ |+|||+||||+||||||++++ .+|||+|.+||+++++||++++||
T Consensus 243 ~~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk 322 (730)
T PRK12568 243 VPAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFA 322 (730)
T ss_pred CCCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHH
Confidence 344478999999988763 389999998 599999999999999999876 479999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHH
Q 015125 94 ALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKD 173 (413)
Q Consensus 94 ~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~ 173 (413)
+||++||++||+||||+|+||++.+.... ..|.+.....++ ++.. .....|..+ .+|+.+|+||++
T Consensus 323 ~lV~~~H~~Gi~VIlD~V~nH~~~d~~~l----~~fdg~~~Ye~~-------d~~~--g~~~~W~~~-~~N~~~peVr~~ 388 (730)
T PRK12568 323 QFVDACHRAGIGVILDWVSAHFPDDAHGL----AQFDGAALYEHA-------DPRE--GMHRDWNTL-IYNYGRPEVTAY 388 (730)
T ss_pred HHHHHHHHCCCEEEEEeccccCCcccccc----ccCCCccccccC-------CCcC--CccCCCCCe-ecccCCHHHHHH
Confidence 99999999999999999999999864311 112211011111 1000 001122222 589999999999
Q ss_pred HHHHHHHHHhhcCCCeEeecccCCCc------------------------HHHHHHHHHhhC---C-CeEEEcccCCCCC
Q 015125 174 IIAWLRWLRNTVGFQDFRFDFARGYS------------------------AKYVKEYIEGAR---P-IFSVGEYWDSCNY 225 (413)
Q Consensus 174 l~~~~~~w~~~~gvDGfR~D~a~~i~------------------------~~~~~~~~~~~~---~-~~~vgE~~~~~~~ 225 (413)
|++++++|+++|||||||+|+++.|. .+||+++.+.++ | +++|||.+..-+
T Consensus 389 li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p- 467 (730)
T PRK12568 389 LLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWP- 467 (730)
T ss_pred HHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCc-
Confidence 99999999999999999999986541 369999888765 4 788999654311
Q ss_pred CCCCCCCccchhhHhHhhhh-ccCCCcccccCccchHHHHHHhccc-hhhhhhhcCCCCCcccccCCcceecccCCCCC-
Q 015125 226 NSHGLDYNQDSHRQRIINWI-DGTGQLSAAFDFTTKGILQEAVKGQ-FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG- 302 (413)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~df~~~~~l~~~~~g~-~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~- 302 (413)
.+.... ..+-+++..+++.+.....+.+..+ ..+....-....+++ +.-.....+..|||+-
T Consensus 468 --------------~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf~~~-y~~~e~fvlp~SHDEvv 532 (730)
T PRK12568 468 --------------GVTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLTFGLV-YAFSERFVLPLSHDEVV 532 (730)
T ss_pred --------------cccccccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhhhhhh-hhhhccEeccCCCcccc
Confidence 111111 2223577888888777777776543 222111100000111 1111233567899994
Q ss_pred ----cCCCCCCCCh----hHHHHHHHHHhcCCCeeEEecCcccC------------Cc-------hhHHHHHHHHHHHHH
Q 015125 303 ----STQAHWPFPS----NHIMEGYAYILMHPGIPSVFYDHFYD------------WG-------DSIHNQIVKLMDVRR 355 (413)
Q Consensus 303 ----R~~~~~~~~~----~~~~la~a~ll~~pGiP~Iy~G~E~g------------w~-------~~l~~~i~~L~~lR~ 355 (413)
++...+..+. ..+|..+++++|.||.||||||+|+| |. +.+..++|+|++||+
T Consensus 533 hgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~~~~ldW~ll~~~~h~~~~~~~~dLn~ly~ 612 (730)
T PRK12568 533 HGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNHDQSLDWHLLDGARHRGMQQLVGDLNAALR 612 (730)
T ss_pred cCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccCCCCccccccCChhHHHHHHHHHHHHHHHH
Confidence 3333333332 24788999999999999999999986 32 258899999999999
Q ss_pred hCcccCCC-----CeEEEEe---cCCEEEEEE-C-----CEEEEEEcCCCC--------CCCCCCcEEeeeCCc
Q 015125 356 QQDIHSRS-----SIKILEA---QSNLYSAII-G-----DKVCMKIGDGSW--------CPAGKEWTLATSGHK 407 (413)
Q Consensus 356 ~~p~l~~G-----~~~~~~~---~~~~~~~~r-~-----~~~lv~lnn~~~--------~~~~~~~~~~~s~~~ 407 (413)
++|+|..+ .++.+.. +++|++|.| + +.++||+|.++. +|..+.|+++|+...
T Consensus 613 ~~paL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~~~~~~Y~ig~p~~G~~~eilNsd~ 686 (730)
T PRK12568 613 RTPALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTPQPHHDYRVGVPRAGGWREILNTDS 686 (730)
T ss_pred hChhhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCCCCccCeEECCCCCCeEEEEEcCch
Confidence 99999654 4555543 346999998 2 237888898664 367789999998653
|
|
| >PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=429.64 Aligned_cols=329 Identities=15% Similarity=0.191 Sum_probs=229.2
Q ss_pred ccccccCCceeEEEeeecCCCCC---------ccHHHHH--hhhhhHHHcCCCEEEcCCCCCCC-----------CCCCC
Q 015125 17 LGAVIRNGREILFQGFNWESCKH---------DWWRNLE--RKVPDISKSGFTSVWLPPATHSF-----------APEGY 74 (413)
Q Consensus 17 ~~~~~~~~~~~i~~~f~~~~~~~---------g~~~gi~--~~L~yLk~lGv~~I~L~Pi~~~~-----------~~~gY 74 (413)
.+|+.+-...+||++..++|+.. |+|+++. ++|+|||+||||+||||||+++. .||||
T Consensus 150 ~~~~~~~~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY 229 (1221)
T PRK14510 150 SPLHGDWDDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGY 229 (1221)
T ss_pred CCCCCCcccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCC
Confidence 34454445579999999887642 4555555 44559999999999999999874 36899
Q ss_pred CcccCCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCc
Q 015125 75 LPQNLYSLNSSYG--SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGS 152 (413)
Q Consensus 75 ~~~d~~~id~~~G--t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (413)
++.||++|+|+|| +.+|||+||++||++||+||||+|+||++.++.... .. .+.+ .++........+... .
T Consensus 230 ~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p-~~-~~~~----~d~~~yy~~~~~~~~-~ 302 (1221)
T PRK14510 230 NTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGP-TL-SAYG----SDNSPYYRLEPGNPK-E 302 (1221)
T ss_pred CCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCC-cc-cccC----CCCCCceEecCCCCC-c
Confidence 9999999999999 999999999999999999999999999998754210 00 0000 000000000000000 0
Q ss_pred CCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCC---cHHHHHHHHHh---hCC------CeEEEccc
Q 015125 153 TGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY---SAKYVKEYIEG---ARP------IFSVGEYW 220 (413)
Q Consensus 153 ~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i---~~~~~~~~~~~---~~~------~~~vgE~~ 220 (413)
....+.....+|+++|.|++++++++++|++ +||||||||+|.++ +.+||+++... +++ .++|||.|
T Consensus 303 y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l~~~~ligE~W 381 (1221)
T PRK14510 303 YENWWGCGNLPNLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVLRRLKMIAEVW 381 (1221)
T ss_pred ccCCCCCCCccccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCcccCcEEEecc
Confidence 0011122234677799999999999999997 99999999999999 88898876554 333 33599999
Q ss_pred CCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccch---hhhhhhcCCCCCcc---cccCCccee
Q 015125 221 DSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQF---WRLRDAQGKPPGVM---GWWPSRAVT 294 (413)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~~---~~~~~~~~~~~~~~---~~~p~~~v~ 294 (413)
...+ ..|..+ .+ ....+.+|+.++..++..+.|+. ..+...+......+ ...+..++|
T Consensus 382 d~~~-----~~~~~g-------~f----~~~~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~~~~iN 445 (1221)
T PRK14510 382 DDGL-----GGYQYG-------KF----PQYWGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNFSRSIN 445 (1221)
T ss_pred cCCC-----CccccC-------CC----CcceeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCcccceE
Confidence 7521 011000 00 00125688888888888886542 23333332111111 123457899
Q ss_pred cccCCCCCcCCCCCCC--------------------------------------ChhHHHHHHHHHhcCCCeeEEecCcc
Q 015125 295 FLDNHDTGSTQAHWPF--------------------------------------PSNHIMEGYAYILMHPGIPSVFYDHF 336 (413)
Q Consensus 295 flenHD~~R~~~~~~~--------------------------------------~~~~~~la~a~ll~~pGiP~Iy~G~E 336 (413)
|++|||+.|+.+.+.+ ...+++++++++||+||+||||||||
T Consensus 446 fi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~GdE 525 (1221)
T PRK14510 446 FITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYYGDE 525 (1221)
T ss_pred EEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEecchh
Confidence 9999999986543210 02358999999999999999999999
Q ss_pred cC--------------------Cc---hhHHHHHHHHHHHHHhCcccCCCCeEEEE
Q 015125 337 YD--------------------WG---DSIHNQIVKLMDVRRQQDIHSRSSIKILE 369 (413)
Q Consensus 337 ~g--------------------w~---~~l~~~i~~L~~lR~~~p~l~~G~~~~~~ 369 (413)
+| |+ +++++++|+||+|||++|+|+.|++....
T Consensus 526 ~g~tq~Gn~n~y~~~~~r~~~~W~~~~~~l~~f~k~Li~lRk~~~~L~~g~~~~~~ 581 (1221)
T PRK14510 526 AGRSQNGNNNGYAQDNNRGTYPWGNEDEELLSFFRRLIKLRREYGVLRQGEFSSGT 581 (1221)
T ss_pred cccccCCCCCCCCCCCccccCCcccccHHHHHHHHHHHHHHHhChhhccCccccCc
Confidence 86 33 37999999999999999999999887543
|
|
| >PLN02960 alpha-amylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=395.06 Aligned_cols=348 Identities=14% Similarity=0.154 Sum_probs=240.3
Q ss_pred eeEEEeeecCCCCC---ccHHHHHhh-hhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCKH---DWWRNLERK-VPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 26 ~~i~~~f~~~~~~~---g~~~gi~~~-L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.+||++...++..+ |+|++++++ |+|||+||||+||||||++++ .+|||++++||+++++|||+++||+||++|
T Consensus 396 ~vIYElHvg~~~~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~a 475 (897)
T PLN02960 396 LRIYECHVGISGSEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEA 475 (897)
T ss_pred cEEEEEecccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHH
Confidence 68999999987665 499999976 999999999999999999876 469999999999999999999999999999
Q ss_pred HHcCCEEEEEEccccCcCCCCCCCCcccccCCCC-CCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHH
Q 015125 100 KQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP-LSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWL 178 (413)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~ 178 (413)
|++||+||||+|+||++.++...- ..|.+.. ..++.. ..+. . ...+...||+.+++||++|++++
T Consensus 476 H~~GI~VILDvV~NH~~~d~~~~L---~~FDG~~~~Yf~~~-----~~g~-----~-~~WG~~~fNy~~~eVr~fLlsna 541 (897)
T PLN02960 476 HGLGLLVFLDIVHSYAAADEMVGL---SLFDGSNDCYFHSG-----KRGH-----H-KRWGTRMFKYGDHEVLHFLLSNL 541 (897)
T ss_pred HHCCCEEEEEecccccCCccccch---hhcCCCccceeecC-----CCCc-----c-CCCCCcccCCCCHHHHHHHHHHH
Confidence 999999999999999999753211 1122100 011100 0000 0 11234679999999999999999
Q ss_pred HHHHhhcCCCeEeecccCCC-------------------------cHHHHHHHHHhhC---C-CeEEEcccCCCCCCCCC
Q 015125 179 RWLRNTVGFQDFRFDFARGY-------------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHG 229 (413)
Q Consensus 179 ~~w~~~~gvDGfR~D~a~~i-------------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~ 229 (413)
++|+++|||||||+|++..| ...|++++.+.++ | +++|||...+.+
T Consensus 542 ~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P----- 616 (897)
T PLN02960 542 NWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYP----- 616 (897)
T ss_pred HHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCC-----
Confidence 99999999999999998653 1347777777654 3 788999665421
Q ss_pred CCCccchhhHhHhhhhcc-CCCcccccCccchHHHHHHhccch---hhhhhhcCCCCCcc--cccCCcceecccCCCCC-
Q 015125 230 LDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQEAVKGQF---WRLRDAQGKPPGVM--GWWPSRAVTFLDNHDTG- 302 (413)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~-~~~~~~~~df~~~~~l~~~~~g~~---~~~~~~~~~~~~~~--~~~p~~~v~flenHD~~- 302 (413)
.+...... +-|++..+++.....+..++.... +....... +.. ...+.+.+.|+||||+.
T Consensus 617 ----------~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~r~~~~~~l~~---s~~~~~~~~~~~v~Y~EnHDQVv 683 (897)
T PLN02960 617 ----------GLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVPDQEWSMSKIVS---TLVKNKENADKMLSYAENHNQSI 683 (897)
T ss_pred ----------CccccCCCCCCCcccccCCCcHHHHHHHHHhCcCCCCChhccEe---eeccCcCCcceEEEEecCcCccc
Confidence 12222222 224555566665555555553211 11111111 111 12344789999999992
Q ss_pred ----cCCCCCCCC-------hh----------HHHHHHHHHhcCCCeeEEecCcccCC----------------------
Q 015125 303 ----STQAHWPFP-------SN----------HIMEGYAYILMHPGIPSVFYDHFYDW---------------------- 339 (413)
Q Consensus 303 ----R~~~~~~~~-------~~----------~~~la~a~ll~~pGiP~Iy~G~E~gw---------------------- 339 (413)
++...+... .. .+..+++++++ ||+||+|||+|||-
T Consensus 684 ~Gkrsl~~rL~g~~~~k~~~~~~~~lRa~al~~~~rllt~~~~-Pg~pLlFMG~EFGh~e~~~~PdP~n~~tf~~s~LdW 762 (897)
T PLN02960 684 SGGKSFAEILLGKNKESSPAVKELLLRGVSLHKMIRLITFTLG-GSAYLNFMGNEFGHPERVEFPRASNNFSFSLANRRW 762 (897)
T ss_pred cCcccHHHHCCCchhhhhcccChhhhhhhhHHHHHHHHHHHhC-CCCCEeeCccccCChhhhhCcCCCCccccccccCCc
Confidence 222222111 01 11112444444 89999999999762
Q ss_pred c-------hhHHHHHHHHHHHHHhCcccCCCCeEEEEe--cCCEEEEEECCEEEEEEcCCCC-C--------CCCCCcEE
Q 015125 340 G-------DSIHNQIVKLMDVRRQQDIHSRSSIKILEA--QSNLYSAIIGDKVCMKIGDGSW-C--------PAGKEWTL 401 (413)
Q Consensus 340 ~-------~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~--~~~~~~~~r~~~~lv~lnn~~~-~--------~~~~~~~~ 401 (413)
. ..+..++|+|++||+++|+|..|...+... ++++++|.|+ .+++|+|.++. . |..+.|++
T Consensus 763 ~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R~-~llvV~NFsp~~~~~~Y~vgvP~~G~y~e 841 (897)
T PLN02960 763 DLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTRG-PLLFAFNFHPTNSYEEYEVGVEEAGEYEL 841 (897)
T ss_pred ccccChhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEeC-CeEEEEeCCCCCcCcCceECCCCCCcEEE
Confidence 1 257889999999999999998877666544 3469999995 58888999652 1 44578999
Q ss_pred eeeCCc
Q 015125 402 ATSGHK 407 (413)
Q Consensus 402 ~~s~~~ 407 (413)
+|+...
T Consensus 842 ilNSD~ 847 (897)
T PLN02960 842 ILNTDE 847 (897)
T ss_pred EEeCch
Confidence 997654
|
|
| >TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=408.43 Aligned_cols=345 Identities=17% Similarity=0.268 Sum_probs=241.5
Q ss_pred cCCceeEEEeeecCCCC-----------CccHHHHHhhhhhHHHcCCCEEEcCCCCCC-------------------CC-
Q 015125 22 RNGREILFQGFNWESCK-----------HDWWRNLERKVPDISKSGFTSVWLPPATHS-------------------FA- 70 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~-----------~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~-------------------~~- 70 (413)
+....|||++.+++|+. .|+|+|++++|+|||+||||+||||||++. ..
T Consensus 448 ~~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~y 527 (1111)
T TIGR02102 448 KREDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNY 527 (1111)
T ss_pred CccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCcccccccccccccccccccccccccc
Confidence 34457999999998884 389999999999999999999999999862 11
Q ss_pred CCCCCcccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCC--CcccccCCCCCCCCCCC
Q 015125 71 PEGYLPQNLYSLNSSYGS--------EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG--GKYNRYDGIPLSWDEHA 140 (413)
Q Consensus 71 ~~gY~~~d~~~id~~~Gt--------~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~--~~y~~~~~~~~~~~~~~ 140 (413)
+|||+|.+||+++++||+ .+|||+||++||++||+||||+|+||++..++..+ ..|+.+.
T Consensus 528 nWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~---------- 597 (1111)
T TIGR02102 528 NWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFM---------- 597 (1111)
T ss_pred ccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEee----------
Confidence 399999999999999998 48999999999999999999999999998654221 1111100
Q ss_pred eeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhh---CC-CeEE
Q 015125 141 VTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGA---RP-IFSV 216 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~---~~-~~~v 216 (413)
+..+... . ..+..+++.++++||++|++++++|+++|||||||||++.+++.++++++..++ .| .+++
T Consensus 598 -----~~~G~~~-~--~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP~~~li 669 (1111)
T TIGR02102 598 -----DADGTPR-T--SFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPNIIMI 669 (1111)
T ss_pred -----CCCCCcc-c--ccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCcCEEEE
Confidence 0011100 0 112467999999999999999999999999999999999999999998887664 34 6789
Q ss_pred EcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHh---------ccch---hhhhhhcCCCCCc
Q 015125 217 GEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV---------KGQF---WRLRDAQGKPPGV 284 (413)
Q Consensus 217 gE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~---------~g~~---~~~~~~~~~~~~~ 284 (413)
||.|.... +...+... .....+..... ..+.|+..++..++..+ .|.. ..+.......+..
T Consensus 670 GE~W~~~~---g~~~~~~~---~~~~~~~~~~~-~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~ 742 (1111)
T TIGR02102 670 GEGWRTYA---GDEGDPVQ---AADQDWMKYTE-TVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHN 742 (1111)
T ss_pred EecccccC---CCCccccc---ccchhhHhcCC-cccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCccc
Confidence 99997511 11111000 00112222111 25677777776666432 1221 2233322211111
Q ss_pred c-cccCCcceecccCCCCCcCCCCCCC--------------ChhHHHHHHHHHhcCCCeeEEecCcccC-----------
Q 015125 285 M-GWWPSRAVTFLDNHDTGSTQAHWPF--------------PSNHIMEGYAYILMHPGIPSVFYDHFYD----------- 338 (413)
Q Consensus 285 ~-~~~p~~~v~flenHD~~R~~~~~~~--------------~~~~~~la~a~ll~~pGiP~Iy~G~E~g----------- 338 (413)
. ...|.+.|+|++|||+.++...+.. ...|.++|.+++|+++|+|||++||||+
T Consensus 743 ~~~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gnnn~y~ 822 (1111)
T TIGR02102 743 FEADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFRNPDYR 822 (1111)
T ss_pred cccCCcccEEEEEecCCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCCccccc
Confidence 1 2357789999999999987432210 0137889999999999999999999862
Q ss_pred -------------------------------------------Cc-----------hhHHHHHHHHHHHHHhCcccCCCC
Q 015125 339 -------------------------------------------WG-----------DSIHNQIVKLMDVRRQQDIHSRSS 364 (413)
Q Consensus 339 -------------------------------------------w~-----------~~l~~~i~~L~~lR~~~p~l~~G~ 364 (413)
|+ .++++++|.||+||+++|+|+.++
T Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk~~~~fr~~~ 902 (1111)
T TIGR02102 823 TPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIELRRSTDAFRLGS 902 (1111)
T ss_pred ccccccccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHHHHhcCccccccc
Confidence 21 157899999999999999998775
Q ss_pred e-------EEEEec--------CCEEEEEE----CCEEEEEEcCCC
Q 015125 365 I-------KILEAQ--------SNLYSAII----GDKVCMKIGDGS 391 (413)
Q Consensus 365 ~-------~~~~~~--------~~~~~~~r----~~~~lv~lnn~~ 391 (413)
. .++... ..+++|.. ++..+|++|...
T Consensus 903 ~~~i~~~v~~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~ 948 (1111)
T TIGR02102 903 KALVDRKVTLITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADD 948 (1111)
T ss_pred hhhhcCcEEEECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCC
Confidence 4 233222 35777764 346777777754
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645). |
| >PRK14705 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-47 Score=411.93 Aligned_cols=353 Identities=15% Similarity=0.155 Sum_probs=244.8
Q ss_pred eeEEEeeecCCCCCccHHHHHhh-hhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015125 26 EILFQGFNWESCKHDWWRNLERK-VPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~-L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~ 102 (413)
.+||++...++...++|++++++ |||||+||||+||||||++++ .+|||++++||+++++|||++|||+||++||++
T Consensus 748 ~~IYEvHvgsf~~~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~ 827 (1224)
T PRK14705 748 MSVYEVHLGSWRLGLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQA 827 (1224)
T ss_pred cEEEEEEecccccCCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHC
Confidence 68999999999888999999988 599999999999999999876 579999999999999999999999999999999
Q ss_pred CCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHH
Q 015125 103 KVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLR 182 (413)
Q Consensus 103 Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~ 182 (413)
||+||||+|+||++.+.... ..|.+.+...+..+.. +. ...|. ...+|+.+++||++|++++++|+
T Consensus 828 GI~VILD~V~nH~~~d~~~l----~~fdg~~~y~~~d~~~----g~-----~~~Wg-~~~fn~~~~eVr~fli~~a~~Wl 893 (1224)
T PRK14705 828 GIGVLLDWVPAHFPKDSWAL----AQFDGQPLYEHADPAL----GE-----HPDWG-TLIFDFGRTEVRNFLVANALYWL 893 (1224)
T ss_pred CCEEEEEeccccCCcchhhh----hhcCCCcccccCCccc----CC-----CCCCC-CceecCCCHHHHHHHHHHHHHHH
Confidence 99999999999998764311 1122111111111100 00 11122 24699999999999999999999
Q ss_pred hhcCCCeEeecccCCC------------------------cHHHHHHHHHhhC---C-CeEEEcccCCCCCCCCCCCCcc
Q 015125 183 NTVGFQDFRFDFARGY------------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLDYNQ 234 (413)
Q Consensus 183 ~~~gvDGfR~D~a~~i------------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~~~~ 234 (413)
++|||||||+|++++| ..+||+++.+.++ | +++|||.+...+
T Consensus 894 ~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p---------- 963 (1224)
T PRK14705 894 DEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFP---------- 963 (1224)
T ss_pred HHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCc----------
Confidence 9999999999999776 3569999988765 4 788999775422
Q ss_pred chhhHhHhhhhc-cCCCcccccCccchHHHHHHhcc-chhhhhhhcCCCCCcccccCCcceecccCCCCCc-CC----CC
Q 015125 235 DSHRQRIINWID-GTGQLSAAFDFTTKGILQEAVKG-QFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGS-TQ----AH 307 (413)
Q Consensus 235 ~~~~~~l~~~~~-~~~~~~~~~df~~~~~l~~~~~g-~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R-~~----~~ 307 (413)
.+..... ++-+++..++..++....+.+.. ...+.........++ .+.......+..|||+.. .. ..
T Consensus 964 -----~vt~p~~~GGlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf~~-~ya~~e~fvl~~SHDevvhgk~sl~~k 1037 (1224)
T PRK14705 964 -----GVTAPTSHGGLGFGLKWNMGWMHDSLKYASEDPINRKWHHGTITFSL-VYAFTENFLLPISHDEVVHGKGSMLRK 1037 (1224)
T ss_pred -----CccccccCCCccCCcEecchhhHHHHHHhhhCcchhhcccchHHHHH-HHHhhcCEecccccccccccchhHHHh
Confidence 1111111 12245555555555544444322 211110000000000 000111233456899853 11 11
Q ss_pred CCCCh----hHHHHHHHHHhcCCCeeEEecCcccC------------Cc-------hhHHHHHHHHHHHHHhCcccCCC-
Q 015125 308 WPFPS----NHIMEGYAYILMHPGIPSVFYDHFYD------------WG-------DSIHNQIVKLMDVRRQQDIHSRS- 363 (413)
Q Consensus 308 ~~~~~----~~~~la~a~ll~~pGiP~Iy~G~E~g------------w~-------~~l~~~i~~L~~lR~~~p~l~~G- 363 (413)
...+. ..++++++++++.||+||||||+||| |. +.+..++|+|++||+++|+|..+
T Consensus 1038 m~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~~~~LdW~ll~~~~h~~~~~~~rdLn~ly~~~paL~~~d 1117 (1224)
T PRK14705 1038 MPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSEQHGLDWFLADIPAHRGIQLLTKDLNELYTSTPALYQRD 1117 (1224)
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccccccCCCcccCChhhHHHHHHHHHHHHHHhcChhhhccC
Confidence 22121 24688999999999999999999986 22 25788999999999999999644
Q ss_pred ----CeEEEEe---cCCEEEEEE----CCEEEEEEcCCCC--------CCCCCCcEEeeeCCce
Q 015125 364 ----SIKILEA---QSNLYSAII----GDKVCMKIGDGSW--------CPAGKEWTLATSGHKY 408 (413)
Q Consensus 364 ----~~~~~~~---~~~~~~~~r----~~~~lv~lnn~~~--------~~~~~~~~~~~s~~~~ 408 (413)
.++.+.. ++++++|.| ++.++|++|.++. +|..+.|+++++....
T Consensus 1118 ~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp~~~~~y~igvp~~G~y~eilnsd~~ 1181 (1224)
T PRK14705 1118 NEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSGGPHKGYTLGVPAAGAWTEVLNTDHE 1181 (1224)
T ss_pred CCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCCCCccCceECCCCCCeEEEEEeCchh
Confidence 4555532 457999998 2358888898552 2556899999987654
|
|
| >PRK13840 sucrose phosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=373.47 Aligned_cols=330 Identities=15% Similarity=0.171 Sum_probs=239.3
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhh-hHHHcCCCEEEcCCCC-CCC-CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVP-DISKSGFTSVWLPPAT-HSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~-yLk~lGv~~I~L~Pi~-~~~-~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~ 102 (413)
.|+|-.|. ++-.+|||+||+++|+ ||++| |++|||+|+| +++ +++||+|.||++|||+|||.+||++|++
T Consensus 4 ~~~litY~-Ds~~~GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L~~----- 76 (495)
T PRK13840 4 KVQLITYA-DRLGDGGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKALGK----- 76 (495)
T ss_pred ceEEEEec-cCCCCCCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHHHHh-----
Confidence 57777777 5555799999999999 59999 9999999999 444 4799999999999999999999999995
Q ss_pred CCEEEEEEccccCcCCCCCCC--------Cccccc----CC------CCCCCCCC------C-e--eccCCCCCCCcCCC
Q 015125 103 KVRAMADIVINHRVGTTQGHG--------GKYNRY----DG------IPLSWDEH------A-V--TSCTGGLGNGSTGD 155 (413)
Q Consensus 103 Gi~VilD~V~NH~~~~~~~~~--------~~y~~~----~~------~~~~~~~~------~-~--~~~~~~~~~~~~~~ 155 (413)
||+||+|+|+||||.+|+|++ ++|.+| .. .+.+|..- . . ..+.++.. .+...
T Consensus 77 giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~-~~~w~ 155 (495)
T PRK13840 77 THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKT-RLVWT 155 (495)
T ss_pred CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCc-eEEec
Confidence 999999999999999999743 334221 10 01111100 0 0 00111111 11122
Q ss_pred -CCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc-------------HHHHHHHHHhhCC--CeEEEcc
Q 015125 156 -NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-------------AKYVKEYIEGARP--IFSVGEY 219 (413)
Q Consensus 156 -~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~-------------~~~~~~~~~~~~~--~~~vgE~ 219 (413)
....+||||++||+|++++++++++|+ +.||||||+||+..+. .++|+++.+.++. ..+|+|+
T Consensus 156 tF~~~QpDLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~Ei 234 (495)
T PRK13840 156 TFTPQQIDIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEVLVEI 234 (495)
T ss_pred cCCcccceeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEEEEeC
Confidence 236899999999999999999999999 8899999999986542 3588888776653 5678997
Q ss_pred cCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHh-ccchhhhhhhcCCCCCcccccCCcceecccC
Q 015125 220 WDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDN 298 (413)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~-~g~~~~~~~~~~~~~~~~~~~p~~~v~flen 298 (413)
+.... .. ..+ .++.+++|||.+...+..++ .++...+.+.+.. .|...+||+.|
T Consensus 235 ~~y~~--------------~~-~~~---~~e~~~vYnF~Lp~ll~~aL~~~~~~~L~~~l~~-------~p~~~~n~L~~ 289 (495)
T PRK13840 235 HSYYK--------------TQ-IEI---AKKVDRVYDFALPPLILHTLFTGDVEALAHWLEI-------RPRNAVTVLDT 289 (495)
T ss_pred ccccC--------------cc-ccc---cccccEEecchhhHHHHHHHHhCCchHHHHHHHh-------CCCccEEeeec
Confidence 75310 00 001 12578999999998888876 5555555443321 25555799999
Q ss_pred CCCCcC----------CCC--------------------------------------------CCCChhHHHHHHHHHhc
Q 015125 299 HDTGST----------QAH--------------------------------------------WPFPSNHIMEGYAYILM 324 (413)
Q Consensus 299 HD~~R~----------~~~--------------------------------------------~~~~~~~~~la~a~ll~ 324 (413)
||.-.+ ... ++.+..++.+|.+++|+
T Consensus 290 HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~ 369 (495)
T PRK13840 290 HDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFF 369 (495)
T ss_pred CCCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHc
Confidence 999765 110 11123478999999999
Q ss_pred CCCeeEEecCcccCCc------------------------------hhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCE
Q 015125 325 HPGIPSVFYDHFYDWG------------------------------DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNL 374 (413)
Q Consensus 325 ~pGiP~Iy~G~E~gw~------------------------------~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~ 374 (413)
+||||+||||+|+|-. ++++..+++|+++|+++|++ .|++++...+++.
T Consensus 370 ~~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF-~~~~~~~~~~~~~ 448 (495)
T PRK13840 370 APGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAF-DGAFSYAADGDTS 448 (495)
T ss_pred CCCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CceEEEecCCCCe
Confidence 9999999999997521 36889999999999999999 6888887667777
Q ss_pred EEEEE--C-CEEEEEEcCC
Q 015125 375 YSAII--G-DKVCMKIGDG 390 (413)
Q Consensus 375 ~~~~r--~-~~~lv~lnn~ 390 (413)
+++.| + ....+.+|..
T Consensus 449 ~~~~~~~~~~~~~~~~~~~ 467 (495)
T PRK13840 449 LTLSWTAGDSSASLTLDFA 467 (495)
T ss_pred EEEEEecCCceEEEEEEcc
Confidence 77766 2 3444555553
|
|
| >TIGR03852 sucrose_gtfA sucrose phosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=372.13 Aligned_cols=331 Identities=17% Similarity=0.150 Sum_probs=237.9
Q ss_pred eeEEEeeecCCCCC--ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015125 26 EILFQGFNWESCKH--DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103 (413)
Q Consensus 26 ~~i~~~f~~~~~~~--g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~G 103 (413)
.|++..|. ++-.+ |+++|++++ ||++ ||++|||+|+|++++++||+|.||++|||+|||.+||++|+++
T Consensus 2 ~v~lity~-Ds~g~glgdl~g~l~~--yL~~-~v~~i~LlPffps~sD~GYdv~DY~~VDP~~Gt~~Df~~L~~~----- 72 (470)
T TIGR03852 2 KAMLITYA-DSLGKNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTGDRGFAPMDYTEVDPAFGDWSDVEALSEK----- 72 (470)
T ss_pred CceEEEec-CCCCCChhhHHHHHHH--HHHH-hCCEEEECCCCcCCCCCCcCchhhceeCcccCCHHHHHHHHHh-----
Confidence 46677776 44444 588888877 9999 7999999999999999999999999999999999999999998
Q ss_pred CEEEEEEccccCcCCCCCCC--------CcccccCCCC-CCCCCC--------Cee-----------ccCCCCCCCcCCC
Q 015125 104 VRAMADIVINHRVGTTQGHG--------GKYNRYDGIP-LSWDEH--------AVT-----------SCTGGLGNGSTGD 155 (413)
Q Consensus 104 i~VilD~V~NH~~~~~~~~~--------~~y~~~~~~~-~~~~~~--------~~~-----------~~~~~~~~~~~~~ 155 (413)
|+||+|+|+||+|.+|+|++ ++|.+|--.. ..|.+. .+. .+.++....+...
T Consensus 73 ~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~t 152 (470)
T TIGR03852 73 YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNT 152 (470)
T ss_pred hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEcc
Confidence 79999999999999998742 3443221000 001110 000 0111110111112
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc-----------H---HHHHHHHHhhC--CCeEEEcc
Q 015125 156 NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-----------A---KYVKEYIEGAR--PIFSVGEY 219 (413)
Q Consensus 156 ~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~-----------~---~~~~~~~~~~~--~~~~vgE~ 219 (413)
....+||||++||.|++++.+++++|+ +.||||||+||+..+. + ++++.+.+-+. +..+++|+
T Consensus 153 F~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~E~ 231 (470)
T TIGR03852 153 FGEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEILPEI 231 (470)
T ss_pred CCccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEEeHh
Confidence 347899999999999999999999999 8999999999994332 2 35566666443 37889998
Q ss_pred cCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHh-ccchhhhhhhcCCCCCcccccCCcceecccC
Q 015125 220 WDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDN 298 (413)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~-~g~~~~~~~~~~~~~~~~~~~p~~~v~flen 298 (413)
+..-. .....+...+++|+|.+...+..++ .++...+.+.+. ..|.+.+||+.|
T Consensus 232 ~~~~~------------------~~~~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~-------~~p~~~~nfL~s 286 (470)
T TIGR03852 232 HEHYT------------------IQFKIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLR-------KSPMKQFTTLDT 286 (470)
T ss_pred hhhcc------------------cccccccceeEEccCccchhhHHHhhccCHHHHHHHHH-------hCcccceEEeec
Confidence 75311 1111124578999999987777776 566665655433 234455799999
Q ss_pred CCCCcC-------------------------CC----------------------CCCCChhHHHHHHHHHhcCCCeeEE
Q 015125 299 HDTGST-------------------------QA----------------------HWPFPSNHIMEGYAYILMHPGIPSV 331 (413)
Q Consensus 299 HD~~R~-------------------------~~----------------------~~~~~~~~~~la~a~ll~~pGiP~I 331 (413)
||.--+ .+ .++.+..++.+|.|++|++||+|.|
T Consensus 287 HDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpGiP~i 366 (470)
T TIGR03852 287 HDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPGIPQV 366 (470)
T ss_pred CCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCCCceE
Confidence 999321 00 1223456789999999999999999
Q ss_pred ecCcccCCc------------------------------hhHHHHHHHHHHHHHhCcccCC-CCeEEEEecCCEEEEEE-
Q 015125 332 FYDHFYDWG------------------------------DSIHNQIVKLMDVRRQQDIHSR-SSIKILEAQSNLYSAII- 379 (413)
Q Consensus 332 y~G~E~gw~------------------------------~~l~~~i~~L~~lR~~~p~l~~-G~~~~~~~~~~~~~~~r- 379 (413)
|||+|+|.. .++...+.+|+++|+++|++.. |++++...++.++++.|
T Consensus 367 Yy~~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~~~~~~~~~~~~~r~ 446 (470)
T TIGR03852 367 YYVGLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSIDIETPSENQIEIVRT 446 (470)
T ss_pred EechhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceEecCCCCcEEEEEEE
Confidence 999998742 2467778889999999999985 99997777889999987
Q ss_pred ----CCEEEEEEcCCC
Q 015125 380 ----GDKVCMKIGDGS 391 (413)
Q Consensus 380 ----~~~~lv~lnn~~ 391 (413)
+..+.+++|..+
T Consensus 447 ~~~~~~~~~~~~n~~~ 462 (470)
T TIGR03852 447 NKDGGNKAILTANLKT 462 (470)
T ss_pred cCCCCceEEEEEecCC
Confidence 234555666544
|
In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism. |
| >PLN02447 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-44 Score=370.55 Aligned_cols=349 Identities=14% Similarity=0.188 Sum_probs=242.5
Q ss_pred ceeEEEeeecCCCCC---ccHHHHH-hhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 015125 25 REILFQGFNWESCKH---DWWRNLE-RKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHK 98 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~---g~~~gi~-~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~ 98 (413)
..+||++....+..+ |+|++++ ++|+|||+||||+||||||++++ .+|||++.|||+++++||++++||+||++
T Consensus 229 ~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~ 308 (758)
T PLN02447 229 ALRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDK 308 (758)
T ss_pred CCEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHH
Confidence 368999999876655 6999975 56999999999999999999986 47999999999999999999999999999
Q ss_pred HHHcCCEEEEEEccccCcCCCCCCCCcccccCCCC-CCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHH
Q 015125 99 MKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP-LSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAW 177 (413)
Q Consensus 99 ~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~ 177 (413)
||++||+||||+|+||++.++.. + ...|.+.. ..|+..+ .++. ...+...+|+.+++||++|+++
T Consensus 309 aH~~GI~VilDvV~nH~~~~~~~--g-l~~fDg~~~~Yf~~~~-----~g~~------~~w~~~~~N~~~~eVr~fLl~~ 374 (758)
T PLN02447 309 AHSLGLRVLMDVVHSHASKNTLD--G-LNGFDGTDGSYFHSGP-----RGYH------WLWDSRLFNYGNWEVLRFLLSN 374 (758)
T ss_pred HHHCCCEEEEEeccccccccccc--c-ccccCCCCccccccCC-----CCCc------CcCCCceecCCCHHHHHHHHHH
Confidence 99999999999999999986531 0 11122111 1222111 0110 1122346999999999999999
Q ss_pred HHHHHhhcCCCeEeecccCCCc--------------------------HHHHHHHHHhhC---C-CeEEEcccCCCCCCC
Q 015125 178 LRWLRNTVGFQDFRFDFARGYS--------------------------AKYVKEYIEGAR---P-IFSVGEYWDSCNYNS 227 (413)
Q Consensus 178 ~~~w~~~~gvDGfR~D~a~~i~--------------------------~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~ 227 (413)
+++|+++|||||||+|++++|- ..||+.+.+.++ | +++|||.+.+.+
T Consensus 375 ~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p--- 451 (758)
T PLN02447 375 LRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMP--- 451 (758)
T ss_pred HHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCC---
Confidence 9999999999999999998762 236777766654 4 788999776522
Q ss_pred CCCCCccchhhHhHhhhhcc-CCCcccccCccchHHHHHHhccc---hhhhhhhcCCCCCccc-ccCCcceecccCCCCC
Q 015125 228 HGLDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVMG-WWPSRAVTFLDNHDTG 302 (413)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~df~~~~~l~~~~~g~---~~~~~~~~~~~~~~~~-~~p~~~v~flenHD~~ 302 (413)
.+...... +-+++..++........+.++.+ .+.+-.... ++.. ....+.|.|.+|||+.
T Consensus 452 ------------~l~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~---sl~~r~~~E~~I~y~eSHDev 516 (758)
T PLN02447 452 ------------TLCRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVH---TLTNRRYTEKCVAYAESHDQA 516 (758)
T ss_pred ------------CccccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHHH---HHhcccccCceEeccCCcCee
Confidence 12222222 22344444444455555555332 122211110 1111 2334788999999997
Q ss_pred cCC--CC----C------CCCh--------hH----HHHHHHHHhcCCCe-eEEecCcccCC------------------
Q 015125 303 STQ--AH----W------PFPS--------NH----IMEGYAYILMHPGI-PSVFYDHFYDW------------------ 339 (413)
Q Consensus 303 R~~--~~----~------~~~~--------~~----~~la~a~ll~~pGi-P~Iy~G~E~gw------------------ 339 (413)
... +. + .+.. .| .|+..++++++||. +++|||.|||-
T Consensus 517 v~Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n~ws~~~~ 596 (758)
T PLN02447 517 LVGDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSYDKC 596 (758)
T ss_pred ecCcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCcccccccCcccc
Confidence 531 11 1 1111 11 25666789999999 79999999862
Q ss_pred ----c---------hhHHHHHHHHHHHHHhCcccCCCCeEEEE--ecCCEEEEEECCEEEEEEcCCCC-C--------CC
Q 015125 340 ----G---------DSIHNQIVKLMDVRRQQDIHSRSSIKILE--AQSNLYSAIIGDKVCMKIGDGSW-C--------PA 395 (413)
Q Consensus 340 ----~---------~~l~~~i~~L~~lR~~~p~l~~G~~~~~~--~~~~~~~~~r~~~~lv~lnn~~~-~--------~~ 395 (413)
. +.+..+.|+|++|++++|+|..|...+.. .++.|++|.|++ +|+|+|..+. + |.
T Consensus 597 ~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~~~Viaf~R~~-ll~V~NF~p~~s~~~Y~igvp~ 675 (758)
T PLN02447 597 RRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFERGD-LVFVFNFHPTNSYSDYRVGCDK 675 (758)
T ss_pred cCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCCCCEEEEEeCC-eEEEEeCCCCCCCCCcEECCCC
Confidence 1 14678999999999999999876554433 345799999974 8888998652 1 45
Q ss_pred CCCcEEeeeCC
Q 015125 396 GKEWTLATSGH 406 (413)
Q Consensus 396 ~~~~~~~~s~~ 406 (413)
.+.|+++|+..
T Consensus 676 ~G~y~~ilnSD 686 (758)
T PLN02447 676 PGKYKIVLDSD 686 (758)
T ss_pred CCeEEEEECCC
Confidence 78999998765
|
|
| >COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=360.92 Aligned_cols=352 Identities=18% Similarity=0.264 Sum_probs=221.6
Q ss_pred eEEEeeecCCCCC-----------ccHHHHHhhhhhHHHcCCCEEEcCCCCCC-CCCCCCCcccCCCCCCCCCCHHHHHH
Q 015125 27 ILFQGFNWESCKH-----------DWWRNLERKVPDISKSGFTSVWLPPATHS-FAPEGYLPQNLYSLNSSYGSEHLLKA 94 (413)
Q Consensus 27 ~i~~~f~~~~~~~-----------g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~-~~~~gY~~~d~~~id~~~Gt~~~~~~ 94 (413)
||||.|...|.+. |||+||+++||||++|||++|||+||+++ ..+|||++.||+.|+|+|||+++|++
T Consensus 2 viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~ 81 (505)
T COG0366 2 VIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKE 81 (505)
T ss_pred cEEEEechhhcCCCCCCccCCCCcccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHH
Confidence 6777777754433 89999999999999999999999999999 67999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEEccccCcCCCCCCCC-----------cccccCC------CCCCCCCCCeeccCCCCC-----CCc
Q 015125 95 LLHKMKQHKVRAMADIVINHRVGTTQGHGG-----------KYNRYDG------IPLSWDEHAVTSCTGGLG-----NGS 152 (413)
Q Consensus 95 Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~-----------~y~~~~~------~~~~~~~~~~~~~~~~~~-----~~~ 152 (413)
||++||++||+||+|+|+||++.+|+++.. .|+.|.. .+.+|... + ....|. ...
T Consensus 82 li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 158 (505)
T COG0366 82 LVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSV--F-GGDAWTWGNTGEYY 158 (505)
T ss_pred HHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhh--c-CCCCCCcCCCCceE
Confidence 999999999999999999999999985421 2222211 11112110 0 011111 111
Q ss_pred CCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcH-----------HHHHHHHHhhCC----CeEEE
Q 015125 153 TGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA-----------KYVKEYIEGARP----IFSVG 217 (413)
Q Consensus 153 ~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~-----------~~~~~~~~~~~~----~~~vg 217 (413)
.......+|+||+.||+||+++.+++++|+ ++||||||+|+++++++ .++..+.+..++ .+..+
T Consensus 159 ~~~~~~~~~dln~~n~~v~~~~~~~~~~W~-~~gvDGfRlDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (505)
T COG0366 159 LHLFSSEQPDLNWENPEVREELLDVVKFWL-DKGVDGFRLDAAKHISKDFGLPPSEENLTFLEEIHEYLREENPDVLIYG 237 (505)
T ss_pred EEecCCCCCCcCCCCHHHHHHHHHHHHHHH-HcCCCeEEeccHhhhccccCCCCcccccccHHHHHHHHHHHHHHHHhcC
Confidence 222346789999999999999999999999 69999999999999997 556655554331 11112
Q ss_pred cccCCCC-CCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHh-ccchhhhhhhcCCCCCcccccCCcceec
Q 015125 218 EYWDSCN-YNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTF 295 (413)
Q Consensus 218 E~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~-~g~~~~~~~~~~~~~~~~~~~p~~~v~f 295 (413)
+.+.... +......+. ..........+...+++.....-.... ......+....................|
T Consensus 238 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (505)
T COG0366 238 EAITDVGEAPGAVKEDF-------ADNTSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLAVNLNDGWNNLF 310 (505)
T ss_pred cceeeeeccccccchhh-------hhccchhhhhHhhccccccccccccccCcccHHHHHHHHHHHHhhhccccCchhhh
Confidence 2221100 000000000 000000000122333332211000000 0001111110000000011112234458
Q ss_pred ccCCCCCcCCCCCCCCh----hHHHHHHHHHhcCCCeeEEecCcccC---------------------------------
Q 015125 296 LDNHDTGSTQAHWPFPS----NHIMEGYAYILMHPGIPSVFYDHFYD--------------------------------- 338 (413)
Q Consensus 296 lenHD~~R~~~~~~~~~----~~~~la~a~ll~~pGiP~Iy~G~E~g--------------------------------- 338 (413)
.+|||++|+.+....+. ..++++.++++++||+|+||||+|.|
T Consensus 311 ~~~hD~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 390 (505)
T COG0366 311 LSNHDQPRLLSRFGDDVGGRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVELDSIILLSRDGCRTPMP 390 (505)
T ss_pred hhhcCccceeeeccCCccchHHHHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhchhhhhhhhhccccCCCCCcC
Confidence 99999999988775444 56888888899999999999999853
Q ss_pred Cc------------------------------------hhHHHHHHHHHHHHHhC-cccCCCCeEEEEecC--CEEEEEE
Q 015125 339 WG------------------------------------DSIHNQIVKLMDVRRQQ-DIHSRSSIKILEAQS--NLYSAII 379 (413)
Q Consensus 339 w~------------------------------------~~l~~~i~~L~~lR~~~-p~l~~G~~~~~~~~~--~~~~~~r 379 (413)
|+ .+++.++++|+++|+++ +.+..|......... .++++.|
T Consensus 391 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 470 (505)
T COG0366 391 WDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFVLLADDDPSLLAFLR 470 (505)
T ss_pred CCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcCcccceecCCCCceEEEEec
Confidence 21 15788999999999998 555567444443332 5888888
Q ss_pred C--CEEEEEEcC
Q 015125 380 G--DKVCMKIGD 389 (413)
Q Consensus 380 ~--~~~lv~lnn 389 (413)
. +..+++++|
T Consensus 471 ~~~~~~~~~~~n 482 (505)
T COG0366 471 ESGGETLLVVNN 482 (505)
T ss_pred ccCCceEEEEEc
Confidence 3 333444444
|
|
| >TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=362.58 Aligned_cols=190 Identities=16% Similarity=0.231 Sum_probs=149.3
Q ss_pred cCCceeEEEeeecCCCC---------CccHHHHHhh-------hhhHHHcCCCEEEcCCCCCCC----------------
Q 015125 22 RNGREILFQGFNWESCK---------HDWWRNLERK-------VPDISKSGFTSVWLPPATHSF---------------- 69 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~---------~g~~~gi~~~-------L~yLk~lGv~~I~L~Pi~~~~---------------- 69 (413)
+....+||++=+++|+. .|+|.+++++ |.||++||||+|+|||+|+..
T Consensus 249 ~~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~ 328 (898)
T TIGR02103 249 SFADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPF 328 (898)
T ss_pred CCcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccch
Confidence 34457999999998873 3899999887 666668899999999998642
Q ss_pred ------------------------------------------------CCCCCCcccCCCCCCCCCCH-------HHHHH
Q 015125 70 ------------------------------------------------APEGYLPQNLYSLNSSYGSE-------HLLKA 94 (413)
Q Consensus 70 ------------------------------------------------~~~gY~~~d~~~id~~~Gt~-------~~~~~ 94 (413)
-+|||+|.+|+.++..|++. .|||+
T Consensus 329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~ 408 (898)
T TIGR02103 329 SKLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFRE 408 (898)
T ss_pred hhhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHH
Confidence 15999999999999999883 69999
Q ss_pred HHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHH
Q 015125 95 LLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDI 174 (413)
Q Consensus 95 Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l 174 (413)
||++||++||+||||+|+|||+.+++...+.+....+ ..++... .++.. .......+++.++|+||++|
T Consensus 409 mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P--~YY~r~~----~~G~~-----~n~~~~~d~a~e~~~Vrk~i 477 (898)
T TIGR02103 409 MVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVP--GYYHRLN----EDGGV-----ENSTCCSNTATEHRMMAKLI 477 (898)
T ss_pred HHHHHHHCCCEEEEEeecccccccCccCcccccccCc--HhhEeeC----CCCCe-----ecCCCCcCCCCCCHHHHHHH
Confidence 9999999999999999999999987654332221111 1111110 01110 11234467899999999999
Q ss_pred HHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC---C-CeEEEcccCC
Q 015125 175 IAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYWDS 222 (413)
Q Consensus 175 ~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~---~-~~~vgE~~~~ 222 (413)
++++++|+++|||||||||++++++.+||+++.++++ | .+++||.|..
T Consensus 478 iDsl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~~ 529 (898)
T TIGR02103 478 VDSLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKALTPEIYFYGEGWDF 529 (898)
T ss_pred HHHHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHhCCCEEEEecCCCc
Confidence 9999999999999999999999999999999988765 4 6789999974
|
Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102). |
| >COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=338.63 Aligned_cols=348 Identities=16% Similarity=0.199 Sum_probs=227.0
Q ss_pred eeEEEeeecCCCC---CccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCK---HDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (413)
Q Consensus 26 ~~i~~~f~~~~~~---~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h 100 (413)
-+||.+=.-+++. .|+++.++++|||||+||||+|+||||.+.+ .+|||+++-||++.++|||+++||+||++||
T Consensus 145 ~vIYElHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH 224 (628)
T COG0296 145 IVIYELHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAH 224 (628)
T ss_pred ceEEEEEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHH
Confidence 5799998888888 8999999999999999999999999999988 4899999999999999999999999999999
Q ss_pred HcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHH
Q 015125 101 QHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRW 180 (413)
Q Consensus 101 ~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~ 180 (413)
++||.||||+|+||.+.+.... ..|.+....-+..+......+|+ ..-.|+..++||+++++++.+
T Consensus 225 ~~GIgViLD~V~~HF~~d~~~L----~~fdg~~~~e~~~~~~~~~~~Wg----------~~i~~~gr~EVR~Fll~nal~ 290 (628)
T COG0296 225 QAGIGVILDWVPNHFPPDGNYL----ARFDGTFLYEHEDPRRGEHTDWG----------TAIFNYGRNEVRNFLLANALY 290 (628)
T ss_pred HcCCEEEEEecCCcCCCCcchh----hhcCCccccccCCcccccCCCcc----------cchhccCcHHHHHHHHHHHHH
Confidence 9999999999999999965421 11111000000000011112222 122455589999999999999
Q ss_pred HHhhcCCCeEeecccCCCc------------------------HHHHHHHHHhhC---C-CeEEEcccCCCCCCCCCCCC
Q 015125 181 LRNTVGFQDFRFDFARGYS------------------------AKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLDY 232 (413)
Q Consensus 181 w~~~~gvDGfR~D~a~~i~------------------------~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~~ 232 (413)
|+++|+|||+|+||+..|. .+|+++..+.++ | .+.|+|-|.+.+..
T Consensus 291 Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~------ 364 (628)
T COG0296 291 WLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHV------ 364 (628)
T ss_pred HHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCc------
Confidence 9999999999999998774 235555555554 2 67799988764320
Q ss_pred ccchhhHhHhhhhccCCCcccccCccchHHHHHHh--ccc--hhhhhhhcCCCCCcccccCCcceecccCCCCC--cCCC
Q 015125 233 NQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV--KGQ--FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG--STQA 306 (413)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~--~g~--~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~--R~~~ 306 (413)
.+...+. +.++.-..|+. .+.+.+ .+. ..+....-....+ +-+.+...+.+..|||+- -..+
T Consensus 365 -------t~~~~~g-G~gf~yk~nmg---~m~D~~~y~~~~~~~r~~~h~~~tf~-~~y~~se~~~l~~sHDevvhGk~s 432 (628)
T COG0296 365 -------TLPVAIG-GLGFGYKWNMG---WMHDTLFYFGKDPVYRKYHHGELTFG-LLYAFSENVVLPLSHDEVVHGKRS 432 (628)
T ss_pred -------eeeeccc-ccchhhhhhhh---hHhhHHHhcccCccccccccCCCccc-cccccceeEeccccccceeecccc
Confidence 0111111 11223333333 223332 121 1111111110001 112345778999999996 2222
Q ss_pred ---CCCC----ChhHHHHHHHHHhcCCCeeEEecCcccC------------C-----------chhHHHHHHHHHHHHHh
Q 015125 307 ---HWPF----PSNHIMEGYAYILMHPGIPSVFYDHFYD------------W-----------GDSIHNQIVKLMDVRRQ 356 (413)
Q Consensus 307 ---~~~~----~~~~~~la~a~ll~~pGiP~Iy~G~E~g------------w-----------~~~l~~~i~~L~~lR~~ 356 (413)
.+.. ....++.+++++++.||+|++|||+||| | .+.+..+.+.|.++-+.
T Consensus 433 l~~rm~g~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~~~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~ 512 (628)
T COG0296 433 LGERMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNFFSSLDWLLLDQAVREGRHKEFRRLVRDLNALYRI 512 (628)
T ss_pred hhccCCcchhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCcccCCCChhhhhhccccchHHHHHHHHHhhHHhhcc
Confidence 2211 2346888999999999999999999986 1 12344445555545555
Q ss_pred CcccCCC-----CeEEEEec---CCEEEEEE-----CCEEEEEEcCCCCC---------CCCCCcEEeeeC
Q 015125 357 QDIHSRS-----SIKILEAQ---SNLYSAII-----GDKVCMKIGDGSWC---------PAGKEWTLATSG 405 (413)
Q Consensus 357 ~p~l~~G-----~~~~~~~~---~~~~~~~r-----~~~~lv~lnn~~~~---------~~~~~~~~~~s~ 405 (413)
.+.+..- .++.+..+ +++++|.| +.+.+|++||...+ |.++.|++.++.
T Consensus 513 ~~~l~~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~~~~~~~~y~~~~~~~g~~~~~lnt 583 (628)
T COG0296 513 PDPLHEQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNFTPVPRVDYRVGVPVAGRWREVLNT 583 (628)
T ss_pred CCccchhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCCCCCcccccccCCcccccEEEeccc
Confidence 5554433 34444432 35888877 45667777774432 245678887764
|
|
| >TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=326.31 Aligned_cols=346 Identities=18% Similarity=0.172 Sum_probs=249.4
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCC---------CC-CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 46 ERKVPDISKSGFTSVWLPPATHS---------FA-PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~---------~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
....+||++|||++|||+|++++ +. +.||++.| |.|||.|||++||++|+++||++||+||+|+|+|||
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHT 155 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-FDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHT 155 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCccc-CccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 45689999999999999999999 65 78999999 699999999999999999999999999999999999
Q ss_pred cCCCCCCC------Cccc--------------ccCCCCCCCCC----------------------CCeeccC----CCCC
Q 015125 116 VGTTQGHG------GKYN--------------RYDGIPLSWDE----------------------HAVTSCT----GGLG 149 (413)
Q Consensus 116 ~~~~~~~~------~~y~--------------~~~~~~~~~~~----------------------~~~~~~~----~~~~ 149 (413)
|..|+ +. +.|- -+.+.+..|+. ..++.-. .+|.
T Consensus 156 s~ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt 234 (688)
T TIGR02455 156 GKGAD-FRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWS 234 (688)
T ss_pred CCCcc-hHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCce
Confidence 99998 32 2221 11111111110 0011000 1121
Q ss_pred --------------CCcCCCCCCCCCcCCCCCHH--HHHHHH-HHHHHHHhhcCCCeEeecccCCCc-------------
Q 015125 150 --------------NGSTGDNFHGVPNIDHTQHF--VRKDII-AWLRWLRNTVGFQDFRFDFARGYS------------- 199 (413)
Q Consensus 150 --------------~~~~~~~~~~~~dln~~~~~--vr~~l~-~~~~~w~~~~gvDGfR~D~a~~i~------------- 199 (413)
+.+....+..+|+||+.||. ||+.++ +++++|. +.|++|||+||+..+.
T Consensus 235 ~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg~e~~~~~~~~~e~ 313 (688)
T TIGR02455 235 ATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLGVERRAEGTAWSEG 313 (688)
T ss_pred ecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHH-HhccccceeccccceeeecCCCCCCCCcc
Confidence 11122345789999999999 999999 8999998 9999999999976653
Q ss_pred HHHHHHHHHhh-----CC-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHh-ccchh
Q 015125 200 AKYVKEYIEGA-----RP-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFW 272 (413)
Q Consensus 200 ~~~~~~~~~~~-----~~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~-~g~~~ 272 (413)
..+++.+.+.+ ++ .++++|.... ++.+..|.. ++.+..|||.+...+.-++ .|+..
T Consensus 314 h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~---------------~~d~~~~~g--~~~dl~~dF~t~p~~~~AL~tgda~ 376 (688)
T TIGR02455 314 HPLSLTGNQLIAGAIRKAGGFSFQELNLT---------------IDDIAAMSH--GGADLSYDFITRPAYHHALLTGDTE 376 (688)
T ss_pred CHHHHHHHHHHHHhhhcCCeeEeeeccCC---------------HHHHHHHhC--CCcceeecccccHHHHHHHHcCCHH
Confidence 34545444432 23 7889996554 467788877 3789999999987777776 67765
Q ss_pred hhhhhcCCCCCcccccCCcceecccCCCCCcCC-------------------------C---------------------
Q 015125 273 RLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQ-------------------------A--------------------- 306 (413)
Q Consensus 273 ~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~-------------------------~--------------------- 306 (413)
-+...+...+. .+-.+.+.++|+.|||+--.. +
T Consensus 377 pLr~~L~~~~~-~gid~~~~~~~LrNHDELtlelvh~~~~~~~~~~~~~g~~~~g~~l~e~~R~~m~~~~a~d~~p~~m~ 455 (688)
T TIGR02455 377 FLRLMLKEMHA-FGIDPASLIHALQNHDELTLELVHFWTLHAHDHYHYKGQTLPGGHLREHIREEIYERLSGEHAPYNLK 455 (688)
T ss_pred HHHHHHHhhhc-CCCCchhhhhhccCccccchhhhhhcccccccccccccccCCccccCHHHHHHHHHHhcCCCccccce
Confidence 55554432211 111234789999999992100 0
Q ss_pred -------------------------CCCCChhHHHHHHHHHhc----CCCeeEEecC--------------cccC-----
Q 015125 307 -------------------------HWPFPSNHIMEGYAYILM----HPGIPSVFYD--------------HFYD----- 338 (413)
Q Consensus 307 -------------------------~~~~~~~~~~la~a~ll~----~pGiP~Iy~G--------------~E~g----- 338 (413)
...++..+++++.++|++ +||+|+|||| +|+|
T Consensus 456 ~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG~p~L~ygdl~GalpL~~~~v~deigmGD~~ 535 (688)
T TIGR02455 456 FVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPGVFALSGWDLVGALPLAAEAVAELMGDGDTR 535 (688)
T ss_pred EEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCCceEeecccccccccccccchhhhhccCccc
Confidence 012244568999999999 9999999999 6654
Q ss_pred C--------------------------------------chhHHHHHHHHHHHHHhCcccCCCCeEEEEecC-CEEEEEE
Q 015125 339 W--------------------------------------GDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQS-NLYSAII 379 (413)
Q Consensus 339 w--------------------------------------~~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~-~~~~~~r 379 (413)
| ..++...+++|+++|+++|++..|.+.++.+++ .++++.+
T Consensus 536 wl~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~~~~~~gvLa~v~ 615 (688)
T TIGR02455 536 WIHRGGYDLADLAPEAEASAEGLPKARALYGSLAEQLDEPDSFACKLKKILAVRQAYDIAASKQILIPDVQAPGLLVMVH 615 (688)
T ss_pred cccCCCcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCCccHHHHHHHHHHHHHhCCcccCceeeecCCCCCcEEEEEE
Confidence 2 037999999999999999999999999887764 6888876
Q ss_pred ---C--CEEEEEEcCCCCC---------------------------CCCCCcEEeeeCCceEEee
Q 015125 380 ---G--DKVCMKIGDGSWC---------------------------PAGKEWTLATSGHKYAVWH 412 (413)
Q Consensus 380 ---~--~~~lv~lnn~~~~---------------------------~~~~~~~~~~s~~~~~~~~ 412 (413)
+ +.++++.|.+... ...+.+++.|++++|+|++
T Consensus 616 ~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~~~~~~dl~~~~~~~~~~~~~~~~i~L~~y~~~wl~ 680 (688)
T TIGR02455 616 ELPAGKGIQITALNFGADAIAEEICLPGFAPGPVVDIIHESVEGDLTDDCELMINLDPYEALALR 680 (688)
T ss_pred EcCCCCceEEEeeccCCCCeeeEEeccccCCCCceeccCCCccCCcCCCceeEEEecCcceEEEE
Confidence 2 3455666663310 0225688999999998874
|
Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits. |
| >PLN02877 alpha-amylase/limit dextrinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=349.16 Aligned_cols=192 Identities=17% Similarity=0.166 Sum_probs=145.3
Q ss_pred cccCCceeEEEeeecCCCCC---------ccHHHHHhh-------hhhHHHcCCCEEEcCCCCCCC--------------
Q 015125 20 VIRNGREILFQGFNWESCKH---------DWWRNLERK-------VPDISKSGFTSVWLPPATHSF-------------- 69 (413)
Q Consensus 20 ~~~~~~~~i~~~f~~~~~~~---------g~~~gi~~~-------L~yLk~lGv~~I~L~Pi~~~~-------------- 69 (413)
..+....|||++=+++|+.+ |+|.+++++ |+|||+||||+|+|||+++..
T Consensus 334 ~~~~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~ 413 (970)
T PLN02877 334 LLSFSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDP 413 (970)
T ss_pred cCCCcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCccccccccccccc
Confidence 33444579999999998863 899998887 666677799999999999742
Q ss_pred -------------------------CCCCCCcccCCCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 70 -------------------------APEGYLPQNLYSLNSSYGS-------EHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 70 -------------------------~~~gY~~~d~~~id~~~Gt-------~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
.+|||+|..|++++..|++ ..|||+||++||++||+||||+|+||++.
T Consensus 414 ~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~ 493 (970)
T PLN02877 414 KELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHS 493 (970)
T ss_pred chhccccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccC
Confidence 3599999999999999998 25899999999999999999999999998
Q ss_pred CCCCCC-CcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccC
Q 015125 118 TTQGHG-GKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (413)
Q Consensus 118 ~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~ 196 (413)
.+++.. +.+....+ .+|. .. +.++.. .......+.+.+++.||++|++++++|+++|||||||||.+.
T Consensus 494 ~g~~~~~s~ld~~vP--~YY~-----r~-~~~G~~---~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg 562 (970)
T PLN02877 494 SGPFDENSVLDKIVP--GYYL-----RR-NSDGFI---ENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMG 562 (970)
T ss_pred CCCcchhhcccCCCC--CceE-----EE-CCCCCc---ccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 765432 21111110 0111 00 111110 012345567889999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHh---h---------CCCeEEEcccCC
Q 015125 197 GYSAKYVKEYIEG---A---------RPIFSVGEYWDS 222 (413)
Q Consensus 197 ~i~~~~~~~~~~~---~---------~~~~~vgE~~~~ 222 (413)
+++.+.|.++.++ + +..+++||.|..
T Consensus 563 ~i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~ 600 (970)
T PLN02877 563 HLMKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWDF 600 (970)
T ss_pred cccHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCCC
Confidence 9999987765543 3 126799999974
|
|
| >KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=329.47 Aligned_cols=365 Identities=27% Similarity=0.384 Sum_probs=242.0
Q ss_pred ccccCCceeEEEeeecCCCCC-----ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHHH
Q 015125 19 AVIRNGREILFQGFNWESCKH-----DWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLL 92 (413)
Q Consensus 19 ~~~~~~~~~i~~~f~~~~~~~-----g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~~ 92 (413)
..++. ..+||.+..+|..+ ||++||++||+|||+|||++|||+||++++. ++||++.||+.|+|+|||+++|
T Consensus 13 ~~W~~--~~~YQI~~~sF~~s~~d~~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf 90 (545)
T KOG0471|consen 13 DWWKT--ESIYQIYPDSFADSDGDGVGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDF 90 (545)
T ss_pred hhhhc--CceeEEeccccccccCCCccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHH
Confidence 34544 58999988877666 6999999999999999999999999999985 6999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEEccccCcCCCCCCCCc------c----cccCCC---------CCCCCCCCee---ccCCCCCC
Q 015125 93 KALLHKMKQHKVRAMADIVINHRVGTTQGHGGK------Y----NRYDGI---------PLSWDEHAVT---SCTGGLGN 150 (413)
Q Consensus 93 ~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~------y----~~~~~~---------~~~~~~~~~~---~~~~~~~~ 150 (413)
++||+++|++||++|+|+|+||++..++|+... | .++.+. +..|.+.... .+..+...
T Consensus 91 ~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~ 170 (545)
T KOG0471|consen 91 KELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQK 170 (545)
T ss_pred HHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccc
Confidence 999999999999999999999999888765421 1 122211 1222222111 11112223
Q ss_pred CcCCCCCCCCCcCCCCCHHHHHHHHHHHH-HHHhhcCCCeEeecccCCCcHHHHHHHHHhhCCCeEEEcccCCCCC-CCC
Q 015125 151 GSTGDNFHGVPNIDHTQHFVRKDIIAWLR-WLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNY-NSH 228 (413)
Q Consensus 151 ~~~~~~~~~~~dln~~~~~vr~~l~~~~~-~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~~~~vgE~~~~~~~-~~~ 228 (413)
.+.......+||+|++||.|++.+.++++ +|. +.||||||+|+++++..+++. ......|.+.+||.|.++++ ...
T Consensus 171 ~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~ 248 (545)
T KOG0471|consen 171 YYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAGENFK-NMWPDEPVFDVGEKLQDDNYVAYQ 248 (545)
T ss_pred eeccchhhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEccccccccccc-ccccCCCcccceeEecCcchhhcc
Confidence 33444457899999999999999999999 665 999999999999999998887 33334457788998887654 223
Q ss_pred CCCCccchh--hHhHhhhhccCCCcccccCccchHHHH-HHhcc--chhhhhhhcCCC-------------------C--
Q 015125 229 GLDYNQDSH--RQRIINWIDGTGQLSAAFDFTTKGILQ-EAVKG--QFWRLRDAQGKP-------------------P-- 282 (413)
Q Consensus 229 ~~~~~~~~~--~~~l~~~~~~~~~~~~~~df~~~~~l~-~~~~g--~~~~~~~~~~~~-------------------~-- 282 (413)
...|..+.. ...+..+........+.+.+.-...+. .+... ...++....... +
T Consensus 249 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~~~~~ 328 (545)
T KOG0471|consen 249 YNDYGEDQPEIHDLIRAERFLLDDYSAAFGFGDKRILQTEAYSSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLTVASI 328 (545)
T ss_pred cccccccchhhhhHHHHHHhhhhhhhhcccccchhhhhhhhhccHHHHHhhhccCCCCccccccchhhhhhhhhccchHH
Confidence 333333210 000111111111122333322111110 00000 000111100000 0
Q ss_pred ------CcccccC--C-cceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC---------------
Q 015125 283 ------GVMGWWP--S-RAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD--------------- 338 (413)
Q Consensus 283 ------~~~~~~p--~-~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g--------------- 338 (413)
..+...+ + .....+.|||..|..++++.+ ..++...+++++||+|++|+|+|+|
T Consensus 329 ~~~~~~~~~~~~~~~~~~a~W~~~~~~~~r~~sr~~~~--~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~ 406 (545)
T KOG0471|consen 329 YKEVEVDWLSNHDTENRWAHWVLGNHDQARLASRFGSD--SVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPK 406 (545)
T ss_pred HHHHHHHHHhcCCccCCceeeeecCccchhhHHHhcch--hHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcH
Confidence 0001111 1 234456778888887776533 3777788999999999999999964
Q ss_pred ---------Cc---------------------------------hhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEE
Q 015125 339 ---------WG---------------------------------DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYS 376 (413)
Q Consensus 339 ---------w~---------------------------------~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~ 376 (413)
|+ .++...++++..+|+....+..|.......+..+++
T Consensus 407 ~~~~rt~~~w~~~~~~gfs~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~~~~~~~if~ 486 (545)
T KOG0471|consen 407 LMQSRTPMQWDESTNAGFSEASKTWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVLFAATPGLFS 486 (545)
T ss_pred HhccCCccccccccccCCCCccCcceeccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccceeeecCCCceEE
Confidence 11 257889999999999987677888888777888999
Q ss_pred EEE---CCEEEEEEcC
Q 015125 377 AII---GDKVCMKIGD 389 (413)
Q Consensus 377 ~~r---~~~~lv~lnn 389 (413)
+.| +....++++|
T Consensus 487 ~~r~~~~~~~~~~~~~ 502 (545)
T KOG0471|consen 487 FSRNWDGNERFIAVLN 502 (545)
T ss_pred EEeccCCCceEEEEEe
Confidence 998 3344444444
|
|
| >COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=336.00 Aligned_cols=324 Identities=17% Similarity=0.240 Sum_probs=218.1
Q ss_pred cccccccccccCCceeEEEeeecCCC---------CCccHHHHHhh--hhhHHHcCCCEEEcCCCCCCC-----------
Q 015125 12 NQQTDLGAVIRNGREILFQGFNWESC---------KHDWWRNLERK--VPDISKSGFTSVWLPPATHSF----------- 69 (413)
Q Consensus 12 ~~~~~~~~~~~~~~~~i~~~f~~~~~---------~~g~~~gi~~~--L~yLk~lGv~~I~L~Pi~~~~----------- 69 (413)
+-+.+.+|.++....|||++=+++|+ ..|+|.|++++ |+|||+||||+|+||||+...
T Consensus 158 ~w~~~~~~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~ 237 (697)
T COG1523 158 DWENDKPPRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLN 237 (697)
T ss_pred ccccCCCCCCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccc
Confidence 33445677787777899999999998 22899999999 999999999999999999654
Q ss_pred CCCCCCcccCCCCCCCCCCH-------HHHHHHHHHHHHcCCEEEEEEccccCcCCCC-CCCCcccccCC---CCCCCCC
Q 015125 70 APEGYLPQNLYSLNSSYGSE-------HLLKALLHKMKQHKVRAMADIVINHRVGTTQ-GHGGKYNRYDG---IPLSWDE 138 (413)
Q Consensus 70 ~~~gY~~~d~~~id~~~Gt~-------~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~-~~~~~y~~~~~---~~~~~~~ 138 (413)
.+|||+|..|++++++|-+. .|||.||+++|++||+||||+|+|||+.... +.. ..|++ ..+++..
T Consensus 238 n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t---~~f~~id~~~Yyr~~ 314 (697)
T COG1523 238 NNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPT---LSFRGIDPNYYYRLD 314 (697)
T ss_pred cccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcc---cccccCCcCceEEEC
Confidence 37999999999999999663 4999999999999999999999999986321 111 11211 0011111
Q ss_pred CCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHH-----HHHHHhhC--
Q 015125 139 HAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYV-----KEYIEGAR-- 211 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~-----~~~~~~~~-- 211 (413)
. ++....+ ......+|.++|.||++|+|+++||+++++|||||||.+..+..+.+ ..+...+.
T Consensus 315 ~------dg~~~N~----TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~~~ 384 (697)
T COG1523 315 P------DGYYSNG----TGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDINANLFLAGEGD 384 (697)
T ss_pred C------CCCeecC----CccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccccCcchhhhccCC
Confidence 1 1111111 23456899999999999999999999999999999999988775544 12333332
Q ss_pred ----CCeEEEcccCCCC--CCCC-CCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccch---hhhhhhcCCC
Q 015125 212 ----PIFSVGEYWDSCN--YNSH-GLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQF---WRLRDAQGKP 281 (413)
Q Consensus 212 ----~~~~vgE~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~~---~~~~~~~~~~ 281 (413)
..-++||.|+-.+ |+.| .|... + .+.++-.++..++....|+. ..++......
T Consensus 385 p~l~~~kliAepwD~g~~gyqvG~Fpd~~---------~--------~aewng~~rD~vr~F~~G~~~~~~~~a~rl~gS 447 (697)
T COG1523 385 PVLSGVKLIAEPWDIGPGGYQVGNFPDSP---------R--------WAEWNGRFRDDVRRFWRGDAGLVGEFAKRLAGS 447 (697)
T ss_pred ccccCceeeecchhhcCCCcccccCCCcc---------c--------hhhhCCcccccccceeeCCCccHHHHHHHhhcC
Confidence 1347888886432 2211 22100 1 12223333444444444432 1222222111
Q ss_pred CCc---ccccCCcceecccCCCCCcCCCC-----------------------------CCC--------C-hhHHHHHHH
Q 015125 282 PGV---MGWWPSRAVTFLDNHDTGSTQAH-----------------------------WPF--------P-SNHIMEGYA 320 (413)
Q Consensus 282 ~~~---~~~~p~~~v~flenHD~~R~~~~-----------------------------~~~--------~-~~~~~la~a 320 (413)
... .+..|..+|+|+++||.-.+... ++. . ....+...+
T Consensus 448 ~d~~~~~~~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~ 527 (697)
T COG1523 448 SDLYKRNGRRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLA 527 (697)
T ss_pred cchhhccCCCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHH
Confidence 111 22457789999999999542210 000 0 112455566
Q ss_pred HHhcCCCeeEEecCcccC--------------------Cc-h---hHHHHHHHHHHHHHhCcccCCCCe
Q 015125 321 YILMHPGIPSVFYDHFYD--------------------WG-D---SIHNQIVKLMDVRRQQDIHSRSSI 365 (413)
Q Consensus 321 ~ll~~pGiP~Iy~G~E~g--------------------w~-~---~l~~~i~~L~~lR~~~p~l~~G~~ 365 (413)
.+++..|+||+-.|||++ |+ . +++.+++.||+||+++|+++...+
T Consensus 528 tlllsqG~pml~~gDe~~rtq~gnnNsYcqdn~inwlDW~~~~~~~l~~f~~~lIaLRk~~~af~~~~f 596 (697)
T COG1523 528 TLLLSQGTPMLLAGDEFGRTQYGNNNAYCQDNEINWLDWSTEANNDLVEFTKGLIALRKAHPAFRRRSF 596 (697)
T ss_pred HHHhhcCCcccccccccccccccccccccCCcccceeccCccccHHHHHHHHHHHHHhhhcchhcccch
Confidence 667789999999999963 66 2 799999999999999999998433
|
|
| >KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=287.89 Aligned_cols=360 Identities=20% Similarity=0.351 Sum_probs=262.3
Q ss_pred cccccCCceeEEEeeecCCCCCccHHHHHhhhh-hHHHcCCCEEEcCCCCCCCC--------CCCCCcccCCCCCCCCCC
Q 015125 18 GAVIRNGREILFQGFNWESCKHDWWRNLERKVP-DISKSGFTSVWLPPATHSFA--------PEGYLPQNLYSLNSSYGS 88 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~-yLk~lGv~~I~L~Pi~~~~~--------~~gY~~~d~~~id~~~Gt 88 (413)
-+++..+|.+|+|+|+|. |..|....+ .|+--|+-+|+++|+.|.-. ..+|+|.. |.++++-|.
T Consensus 21 ~t~~~~~R~tmVHLFEWK------W~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~tRSGN 93 (504)
T KOG2212|consen 21 STNTQQGRTTIVHLFEWK------WVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGN 93 (504)
T ss_pred CchhhcCcceEEEEEEee------hHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEeeccCCC
Confidence 356778999999999999 777666555 67889999999999998642 24799998 899999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccCcCCC-C----CCCCccc-----ccCC---CCCCCCCCC----eeccCCC-CCC
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTT-Q----GHGGKYN-----RYDG---IPLSWDEHA----VTSCTGG-LGN 150 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~-~----~~~~~y~-----~~~~---~~~~~~~~~----~~~~~~~-~~~ 150 (413)
++||+.||..|.+.|+|+++|+|+|||+... . +..+.+. .|.+ ...+|++.. .+...+- ...
T Consensus 94 E~eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda~ 173 (504)
T KOG2212|consen 94 EDEFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYNDAT 173 (504)
T ss_pred HHHHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccccccchh
Confidence 9999999999999999999999999999621 1 1111111 1111 124555521 1111110 112
Q ss_pred CcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCC-----------CeEEEcc
Q 015125 151 GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARP-----------IFSVGEY 219 (413)
Q Consensus 151 ~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~-----------~~~vgE~ 219 (413)
+...|.+-++-|||..+..||..+++++..++ +.||.|||.||+|||++.-+..+...+++ .|++-|+
T Consensus 174 ~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~Di~~I~~~l~nLnsD~f~s~srpfi~qEV 252 (504)
T KOG2212|consen 174 QVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGDIKAILDKLHNLNSDWFPSGSKPFIYQEV 252 (504)
T ss_pred hhhcceEeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHHHHHHHHHHhhcccccccCCCCceehhhh
Confidence 35677888999999999999999999999999 99999999999999999999988887762 3555555
Q ss_pred cCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc-hhhhhhhcCCCCCcccccCC-cceeccc
Q 015125 220 WDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ-FWRLRDAQGKPPGVMGWWPS-RAVTFLD 297 (413)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~-~~~~~~~~~~~~~~~~~~p~-~~v~fle 297 (413)
.+.. |++ -.-..|.+ +-.+-.|.+...+-.+++++ .+.+..+|+.. ++..|. +.++|++
T Consensus 253 ID~G----gE~--------v~~~dY~g----~G~~TeF~f~~~ig~~~r~~~~~kyL~nwG~~---wGf~~s~~~L~FvD 313 (504)
T KOG2212|consen 253 IDLG----GEP--------IKSSDYFG----NGRVTEFKFGAKLGTVIRKWNKMKYLKNWGEG---WGFMPSDRALVFVD 313 (504)
T ss_pred hhcC----Cce--------eecccccC----CceeeeeechHHHHHHHhcchhHHHHHhcCCc---cCcCCCcceEEEec
Confidence 5421 111 01112322 22444556667777777654 56778888854 444555 8999999
Q ss_pred CCCCCcCCCC-----CCC-ChhHHHHHHHHHhcCC-CeeEEecCccc----------------------------CCch-
Q 015125 298 NHDTGSTQAH-----WPF-PSNHIMEGYAYILMHP-GIPSVFYDHFY----------------------------DWGD- 341 (413)
Q Consensus 298 nHD~~R~~~~-----~~~-~~~~~~la~a~ll~~p-GiP~Iy~G~E~----------------------------gw~~- 341 (413)
|||++|..+. +.+ ..++++||.+|+|+.| |+|-++..--| ||-.
T Consensus 314 NHDNQR~~gagga~VltYK~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~~D~~PP~~~~~~i~SP~Fn~D~tC~~GWvCE 393 (504)
T KOG2212|consen 314 NHDNQRGHGAGGASVLTYKDARLYKMAVGFMLAHPYGFTRVMSSFAFDVNDWVPPPNNNGVIKSPTFNPDTTCGNGWVCE 393 (504)
T ss_pred cCcccccCCCCcceEEEecchhhhhhhhhhheecccCcchhheeeeeecCCCCCCCCCCcceecceeCCCCcccCceeee
Confidence 9999996543 322 4578999999999999 99999886543 3433
Q ss_pred hHHHHHHHHHHHHHhCcccCCCCeEEE-EecCCEEEEEECCEEEEEEcCCCCC--------CCCCCcEEeeeCCc
Q 015125 342 SIHNQIVKLMDVRRQQDIHSRSSIKIL-EAQSNLYSAIIGDKVCMKIGDGSWC--------PAGKEWTLATSGHK 407 (413)
Q Consensus 342 ~l~~~i~~L~~lR~~~p~l~~G~~~~~-~~~~~~~~~~r~~~~lv~lnn~~~~--------~~~~~~~~~~s~~~ 407 (413)
.-...|+.|..+|..- +.-.++-+ ....+.++|.|+++..+++||+... .+++++++++||..
T Consensus 394 HRWrqI~~Mv~FrnAV---~~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~~~d~s~~l~T~LPAGtYCDviSG~~ 465 (504)
T KOG2212|consen 394 HRWRQIRNMVNFRNAV---DGTPFTNWYDNGSNQIAFGRGNRGFIAFNNDDWDFSLTLQTGLPAGTYCDVISGDK 465 (504)
T ss_pred chHHHHHHHHhhhhhc---CCccccceeeCCCcEEEEecCCccEEEEeCcchhHHHHHhcCCCCCceeeeecccc
Confidence 2467899999999875 33344444 4447899999999999999996532 35688888888853
|
|
| >TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=319.72 Aligned_cols=185 Identities=17% Similarity=0.195 Sum_probs=145.3
Q ss_pred CCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 36 SCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 36 ~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
+.++++|++++++|+||++||||+|||+||+++. ++|||++.||+.|+|+||++++|++||++||++||+||+|+|+|
T Consensus 9 ~~~~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpN 88 (825)
T TIGR02401 9 LRAGFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPN 88 (825)
T ss_pred eCCCCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 3467899999999999999999999999999874 67999999999999999999999999999999999999999999
Q ss_pred cCcCC---CCC--------CCCcccccCCCCCCCCCCC----------------------------------e------e
Q 015125 114 HRVGT---TQG--------HGGKYNRYDGIPLSWDEHA----------------------------------V------T 142 (413)
Q Consensus 114 H~~~~---~~~--------~~~~y~~~~~~~~~~~~~~----------------------------------~------~ 142 (413)
|||.+ ++| ..+.|..|.. .+|++.. + +
T Consensus 89 H~a~~~~~n~wf~dvl~~g~~S~y~~~Fd--idw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~ 166 (825)
T TIGR02401 89 HMAVHLEQNPWWWDVLKNGPSSAYAEYFD--IDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRL 166 (825)
T ss_pred ccccccccChHHHHHHHhCCCCCccCceE--EeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccC
Confidence 99987 443 2355543332 2333210 0 0
Q ss_pred ccC--------------CCCC-------------CCc----------CCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhc
Q 015125 143 SCT--------------GGLG-------------NGS----------TGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTV 185 (413)
Q Consensus 143 ~~~--------------~~~~-------------~~~----------~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~ 185 (413)
+.. ..+. .+| +..+...++.++.++|+|.+.....+..|+++.
T Consensus 167 Pi~p~ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g 246 (825)
T TIGR02401 167 PLAPGTLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEG 246 (825)
T ss_pred CcCccchhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcC
Confidence 000 0000 001 111235799999999999999999999999666
Q ss_pred CCCeEeecccCCC--cHHHHHHHHHhhCC-CeEEEc-ccCC
Q 015125 186 GFQDFRFDFARGY--SAKYVKEYIEGARP-IFSVGE-YWDS 222 (413)
Q Consensus 186 gvDGfR~D~a~~i--~~~~~~~~~~~~~~-~~~vgE-~~~~ 222 (413)
-|||+|+|+++++ |..||+.+.+++.+ .+++.| ++..
T Consensus 247 ~vdGlRIDh~dGL~dP~~Yl~rLr~~~~~~~yivvEKIl~~ 287 (825)
T TIGR02401 247 LVDGLRIDHIDGLADPEGYLRRLRELVGPARYLVVEKILAP 287 (825)
T ss_pred CCceEEeccccccCChHHHHHHHHHhcCCCceEEEEEeccC
Confidence 6999999999999 88899999988886 677778 5544
|
This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis. |
| >PLN03244 alpha-amylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=280.83 Aligned_cols=322 Identities=14% Similarity=0.163 Sum_probs=207.2
Q ss_pred eeEEEeeecCCCCC---ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015125 26 EILFQGFNWESCKH---DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 26 ~~i~~~f~~~~~~~---g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~ 102 (413)
-.||.+=+--+..+ |+|+..+++ +++||+++++|||++|||+||++||++
T Consensus 401 lrIYE~HvGms~~e~kv~ty~eF~~~---------------------------vt~fFApssRYGTPeDLK~LVD~aH~~ 453 (872)
T PLN03244 401 LRIYECHVGISGSEPKISSFEEFTEK---------------------------VTNFFAASSRYGTPDDFKRLVDEAHGL 453 (872)
T ss_pred ceEEEEEeeecCCCCCcccHHHHhhc---------------------------cCcccccCcccCCHHHHHHHHHHHHHC
Confidence 35888877766666 678777775 679999999999999999999999999
Q ss_pred CCEEEEEEccccCcCCCCCCCCcccccCCCC-CCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHH
Q 015125 103 KVRAMADIVINHRVGTTQGHGGKYNRYDGIP-LSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWL 181 (413)
Q Consensus 103 Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w 181 (413)
||+||||+|+||++.+....- ..|.+.+ ..++.. ..+. ...| +...+|+.+++||++|++++++|
T Consensus 454 GI~VILDvV~NH~~~d~~~GL---~~fDGt~~~Yf~~~-----~~g~-----~~~W-Gs~~fnyg~~EVr~FLLsna~yW 519 (872)
T PLN03244 454 GLLVFLDIVHSYAAADEMVGL---SLFDGSNDCYFHTG-----KRGH-----HKHW-GTRMFKYGDLDVLHFLISNLNWW 519 (872)
T ss_pred CCEEEEEecCccCCCccccch---hhcCCCccceeccC-----CCCc-----cCCC-CCceecCCCHHHHHHHHHHHHHH
Confidence 999999999999998653110 1121100 111110 0000 0112 23568999999999999999999
Q ss_pred HhhcCCCeEeecccCCCc-------------------------HHHHHHHHHhh---CC-CeEEEcccCCCCCCCCCCCC
Q 015125 182 RNTVGFQDFRFDFARGYS-------------------------AKYVKEYIEGA---RP-IFSVGEYWDSCNYNSHGLDY 232 (413)
Q Consensus 182 ~~~~gvDGfR~D~a~~i~-------------------------~~~~~~~~~~~---~~-~~~vgE~~~~~~~~~~~~~~ 232 (413)
+++|||||||+|++..|- ..|++.+.+.+ .| +++|||-..+-+
T Consensus 520 leEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P-------- 591 (872)
T PLN03244 520 ITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYP-------- 591 (872)
T ss_pred HHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCc--------
Confidence 999999999999983332 23666665554 35 678999665421
Q ss_pred ccchhhHhHhhhhccCC-CcccccCccchHHHHHHhccc---hhhhhhhcCCCCCcc--cccCCcceecccCCCCC----
Q 015125 233 NQDSHRQRIINWIDGTG-QLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVM--GWWPSRAVTFLDNHDTG---- 302 (413)
Q Consensus 233 ~~~~~~~~l~~~~~~~~-~~~~~~df~~~~~l~~~~~g~---~~~~~~~~~~~~~~~--~~~p~~~v~flenHD~~---- 302 (413)
.+...+..+| |++..++........+.++.. .+.+-.... ++. .......+.|.||||++
T Consensus 592 -------~vt~Pv~~GGLGFDYKWnMgwmdd~lkylk~~pderw~~~~Itf---sL~~nrr~~ek~~aYsESHDqaLvGd 661 (872)
T PLN03244 592 -------GLCEPTSQGGLGFDYYVNLSAPDMWLDFLDNIPDHEWSMSKIVS---TLIANKEYADKMLSYAENHNQSISGG 661 (872)
T ss_pred -------CccccCCCCCCCccceecCcchHHHHHHHHhCCCcccCHHHHhh---hhhcccCCcceEEEEecccceecccc
Confidence 2222222221 233333333333334444211 122211110 100 11223679999999993
Q ss_pred cCCC-CC-------CCC--------hhHHHHHHHHHhcCCCee-EEecCcccC------C----------------c---
Q 015125 303 STQA-HW-------PFP--------SNHIMEGYAYILMHPGIP-SVFYDHFYD------W----------------G--- 340 (413)
Q Consensus 303 R~~~-~~-------~~~--------~~~~~la~a~ll~~pGiP-~Iy~G~E~g------w----------------~--- 340 (413)
+... .+ ... ...-||+.++++++||.| ++|||+||| | .
T Consensus 662 KTlaf~l~d~~~y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr~gN~~s~~~arrdW~Lld 741 (872)
T PLN03244 662 RSFAEILFGAIDEDPLGGKELLDRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPERIEFPMPSNNFSFSLANRCWDLLE 741 (872)
T ss_pred chHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHccCccceeecccccCCchheeccccCCCccccccccCccccC
Confidence 2111 00 000 012366667788899988 799999986 2 1
Q ss_pred ----hhHHHHHHHHHHHHHhCcccCCCCeEEEE--ecCCEEEEEECCEEEEEEcCCCC---------CCCCCCcEEeeeC
Q 015125 341 ----DSIHNQIVKLMDVRRQQDIHSRSSIKILE--AQSNLYSAIIGDKVCMKIGDGSW---------CPAGKEWTLATSG 405 (413)
Q Consensus 341 ----~~l~~~i~~L~~lR~~~p~l~~G~~~~~~--~~~~~~~~~r~~~~lv~lnn~~~---------~~~~~~~~~~~s~ 405 (413)
+.|..+.+.|++|++++|+|..|...+.. .++.|+||.|+ .+|+|+|..+. +|..+.|+++|+.
T Consensus 742 ~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~-~LLfVfNF~P~~sy~dYrIGVp~~G~Y~eILNS 820 (872)
T PLN03244 742 NEVHHHLFSFDKDLMDLDENEGILSRGLPNIHHVKDAAMVISFMRG-PFLFIFNFHPSNSYEGYDVGVEEAGEYQIILNS 820 (872)
T ss_pred ChhHHHHHHHHHHHHHHHhcCcccccCCcEEeeecCCCCEEEEEec-CEEEEEeCCCCCCccCCEECCCCCCeEEEEEeC
Confidence 24778999999999999999877554443 34579999997 58888999653 1457899999975
Q ss_pred Cc
Q 015125 406 HK 407 (413)
Q Consensus 406 ~~ 407 (413)
..
T Consensus 821 D~ 822 (872)
T PLN03244 821 DE 822 (872)
T ss_pred Ch
Confidence 43
|
|
| >PRK14511 maltooligosyl trehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=277.04 Aligned_cols=84 Identities=21% Similarity=0.289 Sum_probs=79.4
Q ss_pred CCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 37 CKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 37 ~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
.++++|++++++|+||++||||+|||+||+++. ++|||++.||+.|+|+||++++|++||++||++||+||+|+|+||
T Consensus 14 ~~~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH 93 (879)
T PRK14511 14 HAGFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNH 93 (879)
T ss_pred CCCCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 456789999999999999999999999999875 689999999999999999999999999999999999999999999
Q ss_pred CcCCCC
Q 015125 115 RVGTTQ 120 (413)
Q Consensus 115 ~~~~~~ 120 (413)
|+.+++
T Consensus 94 ~~~~~~ 99 (879)
T PRK14511 94 MAVGGP 99 (879)
T ss_pred ccCcCc
Confidence 999763
|
|
| >KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-31 Score=264.99 Aligned_cols=168 Identities=21% Similarity=0.330 Sum_probs=132.0
Q ss_pred cccccCCceeEEEeeecCCCCC----cc---HHHHHhh-hhhHHHcCCCEEEcCCCCCCC---CCCCCCcccCCCCCCCC
Q 015125 18 GAVIRNGREILFQGFNWESCKH----DW---WRNLERK-VPDISKSGFTSVWLPPATHSF---APEGYLPQNLYSLNSSY 86 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~~----g~---~~gi~~~-L~yLk~lGv~~I~L~Pi~~~~---~~~gY~~~d~~~id~~~ 86 (413)
.|..+..+=.||.+=++.++.+ -+ |++.++| |++||+||+|||+||||+++. ..+||.|++|++...+|
T Consensus 222 ~p~~P~~sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrY 301 (757)
T KOG0470|consen 222 RPKIPESSLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRY 301 (757)
T ss_pred CCCCChhheEEEEEeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccc
Confidence 3334443457999999877666 25 9999999 999999999999999999994 36999999999999999
Q ss_pred CCHH------HHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCC--CCCCCCCeeccCCCCCCCcCCCCCC
Q 015125 87 GSEH------LLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP--LSWDEHAVTSCTGGLGNGSTGDNFH 158 (413)
Q Consensus 87 Gt~~------~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
||.+ |||+||++||..||-|+||+|.||++.+.. ..+.-|++.. .+++.. +.+ ..+..
T Consensus 302 gt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~---d~l~~fdGid~~~Yf~~~-------~r~----~h~~~ 367 (757)
T KOG0470|consen 302 GTPESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSK---DGLNMFDGIDNSVYFHSG-------PRG----YHNSW 367 (757)
T ss_pred cCCCcccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcC---CcchhccCcCCceEEEeC-------Ccc----ccccc
Confidence 9999 999999999999999999999999999432 2222233310 111111 111 01123
Q ss_pred CCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc
Q 015125 159 GVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS 199 (413)
Q Consensus 159 ~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~ 199 (413)
+..-||+.+++|+++|++.++||+.||+|||||+|.+.+|-
T Consensus 368 ~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~ 408 (757)
T KOG0470|consen 368 CSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSML 408 (757)
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhh
Confidence 34568999999999999999999999999999999886654
|
|
| >smart00642 Aamy Alpha-amylase domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-27 Score=207.80 Aligned_cols=92 Identities=21% Similarity=0.350 Sum_probs=87.7
Q ss_pred eeEEEeeecCCCCC-ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC----CCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSF----APEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~----~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h 100 (413)
+++.+.|.|+.... |||++|+++|+||++||||+|||+||+++. +++||++.||++++|+|||+++|++||++||
T Consensus 1 qi~~~~F~~~~~~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h 80 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAH 80 (166)
T ss_pred CeeeccccCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHH
Confidence 37899999986666 899999999999999999999999999988 6899999999999999999999999999999
Q ss_pred HcCCEEEEEEccccCcC
Q 015125 101 QHKVRAMADIVINHRVG 117 (413)
Q Consensus 101 ~~Gi~VilD~V~NH~~~ 117 (413)
++||+||+|+|+||++.
T Consensus 81 ~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 81 ARGIKVILDVVINHTSD 97 (166)
T ss_pred HCCCEEEEEECCCCCCC
Confidence 99999999999999988
|
|
| >PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-21 Score=214.78 Aligned_cols=82 Identities=22% Similarity=0.284 Sum_probs=77.9
Q ss_pred CCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 36 SCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 36 ~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
+..+++|++++++|+||++||||+|||+||+++. ++|||++.||+.|+|.||++++|++||++||++||+||+|+|+|
T Consensus 751 ~~~~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~N 830 (1693)
T PRK14507 751 FHKDFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPN 830 (1693)
T ss_pred eCCCCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4557899999999999999999999999999963 68999999999999999999999999999999999999999999
Q ss_pred cCcC
Q 015125 114 HRVG 117 (413)
Q Consensus 114 H~~~ 117 (413)
||+.
T Consensus 831 H~~~ 834 (1693)
T PRK14507 831 HMGV 834 (1693)
T ss_pred ccCC
Confidence 9995
|
|
| >COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-19 Score=179.07 Aligned_cols=96 Identities=22% Similarity=0.394 Sum_probs=84.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
+|+..++.||||++|||.++|++|||... |.|||+++|...|+|.+|+.+.|.+||+++|++||.+|+|+|+|||+..
T Consensus 17 tF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 17 TFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred CHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhcc
Confidence 69999999999999999999999999865 6899999999999999999999999999999999999999999999997
Q ss_pred -C--C--------CCCCcccccCCCCCCCCC
Q 015125 119 -T--Q--------GHGGKYNRYDGIPLSWDE 138 (413)
Q Consensus 119 -~--~--------~~~~~y~~~~~~~~~~~~ 138 (413)
+ + +..|.|..|.+ .+|++
T Consensus 97 g~~N~ww~DVLe~G~~S~ya~yFD--I~W~~ 125 (889)
T COG3280 97 GHENPWWWDVLENGRDSAYANYFD--IDWEE 125 (889)
T ss_pred cccChHHHHHHHhCcCccchhhcc--cccCC
Confidence 3 1 34566665543 44443
|
|
| >TIGR01531 glyc_debranch glycogen debranching enzymye | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-17 Score=179.40 Aligned_cols=81 Identities=19% Similarity=0.325 Sum_probs=76.2
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCC-CCCCCCCCcccCCCCCCCCC----CHHHHHHHHHHHHHc-CCEEEEEEccc
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATH-SFAPEGYLPQNLYSLNSSYG----SEHLLKALLHKMKQH-KVRAMADIVIN 113 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~-~~~~~gY~~~d~~~id~~~G----t~~~~~~Lv~~~h~~-Gi~VilD~V~N 113 (413)
|.|+...++|++||+||+|.|||+||++ +.+.+.|++.||+.|||.|| ++++|++||+++|+. ||+||+|+|+|
T Consensus 129 G~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~N 208 (1464)
T TIGR01531 129 GPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVFN 208 (1464)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeeec
Confidence 6799999999999999999999999995 55789999999999999995 899999999999996 99999999999
Q ss_pred cCcCCCC
Q 015125 114 HRVGTTQ 120 (413)
Q Consensus 114 H~~~~~~ 120 (413)
|||.+|+
T Consensus 209 HTa~ds~ 215 (1464)
T TIGR01531 209 HTANNSP 215 (1464)
T ss_pred ccccCCH
Confidence 9999994
|
glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground. |
| >PF14872 GHL5: Hypothetical glycoside hydrolase 5 | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-11 Score=120.61 Aligned_cols=153 Identities=15% Similarity=0.191 Sum_probs=110.7
Q ss_pred cccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHH---------------cCCCEEEcCCCCCCC-------------
Q 015125 18 GAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISK---------------SGFTSVWLPPATHSF------------- 69 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~---------------lGv~~I~L~Pi~~~~------------- 69 (413)
+|.+.+. .-|+|+=.-+-+.+|++.|+++.-..|++ .|+|+|+|+||=+..
T Consensus 172 ~~rv~~P-~nILQiHv~TAsp~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff 250 (811)
T PF14872_consen 172 IPRVPAP-RNILQIHVGTASPEGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFF 250 (811)
T ss_pred CcccCCC-ceeEEEecCCCCCCcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCcee
Confidence 5555443 46999999999999999999988887763 699999999986543
Q ss_pred --------------------------------CCCCCCcc--cCCCCCCCC-CC--HHHHHHHHHHHHH---cCCEEEEE
Q 015125 70 --------------------------------APEGYLPQ--NLYSLNSSY-GS--EHLLKALLHKMKQ---HKVRAMAD 109 (413)
Q Consensus 70 --------------------------------~~~gY~~~--d~~~id~~~-Gt--~~~~~~Lv~~~h~---~Gi~VilD 109 (413)
..|||++. -.-+.+|.. +| ++|+-.||+.+|. ..|+||.|
T Consensus 251 ~~~~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyD 330 (811)
T PF14872_consen 251 SIRPEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYD 330 (811)
T ss_pred eecccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEe
Confidence 13666643 122333322 22 6899999999996 68999999
Q ss_pred EccccCcCCCCC-CCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCC
Q 015125 110 IVINHRVGTTQG-HGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQ 188 (413)
Q Consensus 110 ~V~NH~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvD 188 (413)
+|+.|.-..+.. .++.| +.+ .+=+ .-|+|+.+|.||+-+++.=+.=+ ++|+|
T Consensus 331 lVyGHADNQ~~~LLn~~f--lkG-------------PnMY-----------GQdlnhq~P~VRAILLEmQRRK~-n~GaD 383 (811)
T PF14872_consen 331 LVYGHADNQALDLLNRRF--LKG-------------PNMY-----------GQDLNHQNPVVRAILLEMQRRKI-NTGAD 383 (811)
T ss_pred eecccccchhhHhhhhhh--ccC-------------Cccc-----------cccccccChHHHHHHHHHHHhhc-ccCCc
Confidence 999998775431 11111 110 1101 23799999999999998877766 99999
Q ss_pred eEeecccCCC
Q 015125 189 DFRFDFARGY 198 (413)
Q Consensus 189 GfR~D~a~~i 198 (413)
|+|+|-+..+
T Consensus 384 GIRVDGgQDF 393 (811)
T PF14872_consen 384 GIRVDGGQDF 393 (811)
T ss_pred eeEecccccc
Confidence 9999998765
|
|
| >PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-09 Score=111.15 Aligned_cols=203 Identities=18% Similarity=0.280 Sum_probs=125.6
Q ss_pred CCCCCcCCCCCHHHHHHHHHHHHHHHh---------hcCCCeEeecccCCCcHHHHHHH---HHhhC----------CCe
Q 015125 157 FHGVPNIDHTQHFVRKDIIAWLRWLRN---------TVGFQDFRFDFARGYSAKYVKEY---IEGAR----------PIF 214 (413)
Q Consensus 157 ~~~~~dln~~~~~vr~~l~~~~~~w~~---------~~gvDGfR~D~a~~i~~~~~~~~---~~~~~----------~~~ 214 (413)
|.-..|+|-+||-||++.+.|+.|++. +-.+||+|+||+.++..+.++.. .+++. ..+
T Consensus 140 fLLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYgv~~~~a~An~Hl 219 (809)
T PF02324_consen 140 FLLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYGVDKNDANANKHL 219 (809)
T ss_dssp --SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-TTTBHHHHCTC-
T ss_pred eEEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhCCCcChhhHhhhh
Confidence 344568999999999999999999994 55699999999999999887643 22221 255
Q ss_pred EEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhcc------chhhhhhhcC--CCCCccc
Q 015125 215 SVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG------QFWRLRDAQG--KPPGVMG 286 (413)
Q Consensus 215 ~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g------~~~~~~~~~~--~~~~~~~ 286 (413)
.|-|.|... =..|+...++....+|..++..+...+.. ....+.+.-- +....-.
T Consensus 220 SilE~ws~n-----------------d~~y~~~~g~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d~~e 282 (809)
T PF02324_consen 220 SILEAWSSN-----------------DPDYVKDTGNPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSNDSTE 282 (809)
T ss_dssp -EESSSTTT-----------------HHHHHHHTTSSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE--S
T ss_pred eeeeccccC-----------------ChHHHhcCCCceeeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccCCcC
Confidence 677999752 12556666667788999988888887622 1233333211 0000001
Q ss_pred ccCCcceecccCCCCCc-----------CC---CC-----------------------CCCChhHHHHHHHHHhcC-CCe
Q 015125 287 WWPSRAVTFLDNHDTGS-----------TQ---AH-----------------------WPFPSNHIMEGYAYILMH-PGI 328 (413)
Q Consensus 287 ~~p~~~v~flenHD~~R-----------~~---~~-----------------------~~~~~~~~~la~a~ll~~-pGi 328 (413)
..+.....|+.+||.+- +. .- ..+....+..+||+||+- ..|
T Consensus 283 n~a~pNYsFvrAHDsevQ~vI~~II~~~i~~~~dg~t~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaYAllLtNKDTV 362 (809)
T PF02324_consen 283 NEAQPNYSFVRAHDSEVQTVIAQIIKDKINPNSDGLTFTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAYALLLTNKDTV 362 (809)
T ss_dssp SESS-EEEES-BSSTTTHHHHHHHHHHHT-TTTCTTC--HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHHHHHHH-SSSE
T ss_pred CcccCceeeeecccHHHHHHHHHHHHhhcCCcccCccCCHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHhCCCCC
Confidence 12235679999999961 00 00 011223489999999987 599
Q ss_pred eEEecCccc-------CCchhHHHHHHHHHHHHHhCcccCCCCeEEEE----ec-CCEEEEEE
Q 015125 329 PSVFYDHFY-------DWGDSIHNQIVKLMDVRRQQDIHSRSSIKILE----AQ-SNLYSAII 379 (413)
Q Consensus 329 P~Iy~G~E~-------gw~~~l~~~i~~L~~lR~~~p~l~~G~~~~~~----~~-~~~~~~~r 379 (413)
|.|||||-| .-+.+.++.|..|++-|.++ ..|....-. .+ .+++.-.|
T Consensus 363 PRVYYGDLYtDdGQYMa~KSpYyDaI~tLLKaRikY---vaGGQtM~~~~~~~~~~~vLtSVR 422 (809)
T PF02324_consen 363 PRVYYGDLYTDDGQYMATKSPYYDAITTLLKARIKY---VAGGQTMAVTYLNGDNSGVLTSVR 422 (809)
T ss_dssp EEEEHHHHBESSSSTTTSB-TTHHHHHHHHHHHHHH-----S-EEEEE--EEETTTSEEEEEE
T ss_pred ceEEecccccccchhhhhcCchHHHHHHHHHHHHHh---hcCCceeeeecccCCCCceEEEEe
Confidence 999999876 34467899999999999999 455443322 23 45888877
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A. |
| >PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-09 Score=105.57 Aligned_cols=85 Identities=14% Similarity=0.255 Sum_probs=75.8
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCCCCCCCH------HHHHHHHHHHH-HcCCEEEEEEc
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSE------HLLKALLHKMK-QHKVRAMADIV 111 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id~~~Gt~------~~~~~Lv~~~h-~~Gi~VilD~V 111 (413)
|.|..=.++|..++++|+|.|+++|+.+.. |...|++.|...++|.+... ++++++|.+++ +.||.+|.|+|
T Consensus 19 G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV 98 (423)
T PF14701_consen 19 GPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV 98 (423)
T ss_pred CCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe
Confidence 568888899999999999999999999975 57899999999999887553 69999999996 69999999999
Q ss_pred cccCcCCCCCCCC
Q 015125 112 INHRVGTTQGHGG 124 (413)
Q Consensus 112 ~NH~~~~~~~~~~ 124 (413)
+||||.+++|...
T Consensus 99 ~NHtA~nS~Wl~e 111 (423)
T PF14701_consen 99 LNHTANNSPWLRE 111 (423)
T ss_pred eccCcCCChHHHh
Confidence 9999999987543
|
|
| >KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.1e-06 Score=89.66 Aligned_cols=81 Identities=20% Similarity=0.303 Sum_probs=71.6
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCCCCCC------CHHHHHHHHHHHHH-cCCEEEEEEc
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYG------SEHLLKALLHKMKQ-HKVRAMADIV 111 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id~~~G------t~~~~~~Lv~~~h~-~Gi~VilD~V 111 (413)
|-|+.=+.+|.-.|+.|.|-|+++|+.+-. +..-|+..|-..+++.+- +.+|.++||+.||+ -||--|-|+|
T Consensus 139 Gpl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~DvV 218 (1521)
T KOG3625|consen 139 GPLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITDVV 218 (1521)
T ss_pred CChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeehhh
Confidence 456677788999999999999999999865 567899999899998876 68999999999996 7999999999
Q ss_pred cccCcCCCC
Q 015125 112 INHRVGTTQ 120 (413)
Q Consensus 112 ~NH~~~~~~ 120 (413)
+||++.+++
T Consensus 219 ~NHtAnns~ 227 (1521)
T KOG3625|consen 219 YNHTANNSK 227 (1521)
T ss_pred hhccccCCc
Confidence 999999883
|
|
| >PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-07 Score=96.68 Aligned_cols=93 Identities=19% Similarity=0.311 Sum_probs=64.7
Q ss_pred CceeEEEeeecCCC------CCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC---------CCCCCcccCCCCC----C
Q 015125 24 GREILFQGFNWESC------KHDWWRNLERKVPDISKSGFTSVWLPPATHSFA---------PEGYLPQNLYSLN----S 84 (413)
Q Consensus 24 ~~~~i~~~f~~~~~------~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~---------~~gY~~~d~~~id----~ 84 (413)
++.|||+.|- +|- .+=+-.-|.+..+-+|++||+..|+.|-+.+.. ..||+-+|-|++. .
T Consensus 563 DSqvIYEgFS-NFQ~~~t~~~eytN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~pt 641 (809)
T PF02324_consen 563 DSQVIYEGFS-NFQDFPTTPSEYTNVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPT 641 (809)
T ss_dssp HT-EEEE----TTB---SSGGGSHHHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-B
T ss_pred hcchhhcccc-ccccCCCChHHHHHHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCC
Confidence 4679999985 321 123678899999999999999999999998653 3799999999887 8
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 85 SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 85 ~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+||+.++|+..|+++|+.||+||.|+|++.+-.
T Consensus 642 KYGs~~dL~~AikALH~~GiqviaDwVpdQiYn 674 (809)
T PF02324_consen 642 KYGSVEDLRNAIKALHAAGIQVIADWVPDQIYN 674 (809)
T ss_dssp TTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE--
T ss_pred CCCCHHHHHHHHHHHHHcCcchhhhhchHhhhC
Confidence 999999999999999999999999999997654
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A. |
| >PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.3e-07 Score=88.60 Aligned_cols=141 Identities=12% Similarity=0.113 Sum_probs=82.9
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCC--CCCCCcccCCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFA--PEGYLPQNLYSLNSSYG--SEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~--~~gY~~~d~~~id~~~G--t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
+-+.+.+.|+.|+++|+|+|++-=--.+.. ..-+.|..-+-.....+ +.+=|+.+|++||++||+|..=+.+...+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 568899999999999999999742212110 11222221111112222 25679999999999999999766444332
Q ss_pred CCCC-CCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecc
Q 015125 117 GTTQ-GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (413)
Q Consensus 117 ~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~ 194 (413)
.... ..+....++.....+|. ..+.+ ......-||..+|+||+++++.++..++.|.|||+-+|-
T Consensus 97 ~~~~~~~~~~p~~~~~~~~~~~----~~~~~---------~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDd 162 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNHPGWV----RTYED---------ANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDD 162 (311)
T ss_pred CchhhhhhcCchhheecCCCce----eeccc---------CCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 2110 00001111100001111 10100 012233589999999999999999999999999999994
|
|
| >PF14871 GHL6: Hypothetical glycosyl hydrolase 6 | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-06 Score=73.29 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=78.1
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc--cCcC-CCCCC
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN--HRVG-TTQGH 122 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N--H~~~-~~~~~ 122 (413)
.+-+++||++|+|+|-+.-= +-+..-|-|+..-...|.++ .+-|+++|++||++||+|++=+-++ .... .|
T Consensus 3 ~~~~~~lk~~~v~si~i~a~--~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~H--- 76 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAK--CHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERH--- 76 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcc--cccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhC---
Confidence 45688999999999997431 10123355666666778888 8889999999999999999555444 2111 22
Q ss_pred CCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecc
Q 015125 123 GGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (413)
Q Consensus 123 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~ 194 (413)
++|.--. .+|...........+...+...+ ..++++++.++..++.|.+||+=+|.
T Consensus 77 -----------PeW~~~~----~~G~~~~~~~~~~~~~~~~c~ns-~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 77 -----------PEWFVRD----ADGRPMRGERFGYPGWYTCCLNS-PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred -----------CceeeEC----CCCCCcCCCCcCCCCceecCCCc-cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 2232110 01100000000011122333434 45699999999999999999998874
|
|
| >PRK14508 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00041 Score=71.22 Aligned_cols=62 Identities=11% Similarity=0.032 Sum_probs=46.0
Q ss_pred cCCceeEEEeeec-CCCCCccHH-HHHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCC
Q 015125 22 RNGREILFQGFNW-ESCKHDWWR-NLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLN 83 (413)
Q Consensus 22 ~~~~~~i~~~f~~-~~~~~g~~~-gi~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id 83 (413)
+...|+++|+|-= ++.+=|||- .+.+-++.+++.|.+.|+|+|+++.. ....|++.+-+.++
T Consensus 4 ~R~~Gv~~~l~SL~~~~GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~aln 68 (497)
T PRK14508 4 KRKSGILLHITSLPGSYGIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAGN 68 (497)
T ss_pred CCceEEEeccccCCCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccC
Confidence 3456899999843 233338995 99999999999999999999999864 23466665544444
|
|
| >PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0015 Score=65.14 Aligned_cols=290 Identities=11% Similarity=0.060 Sum_probs=146.7
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcC-CCCCCCCCCCCCcccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLP-PATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~-Pi~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
+-+.|.+.++.++++|++.+.|= -.+......--..-|. .++ .+|- .-|+.|++.+|++||+.=|=+-+--++.+
T Consensus 56 ~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW-~~~~~kFP--~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~ 132 (394)
T PF02065_consen 56 TEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDW-EPDPKKFP--NGLKPLADYIHSLGMKFGLWFEPEMVSPD 132 (394)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBE-CBBTTTST--THHHHHHHHHHHTT-EEEEEEETTEEESS
T ss_pred CHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCce-eEChhhhC--CcHHHHHHHHHHCCCeEEEEeccccccch
Confidence 67888899999999999988762 2222211110011222 233 3552 35999999999999999988877766766
Q ss_pred CCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCC
Q 015125 119 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 198 (413)
Q Consensus 119 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i 198 (413)
+....... +|--. ..+ ... . ......-||+.+|+|++++.+.+..++++.|||.+-+|.-..+
T Consensus 133 S~l~~~hP--------dw~l~----~~~-~~~-~---~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~ 195 (394)
T PF02065_consen 133 SDLYREHP--------DWVLR----DPG-RPP-T---LGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDI 195 (394)
T ss_dssp SCHCCSSB--------GGBTC----CTT-SE--E---CBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-T
T ss_pred hHHHHhCc--------cceee----cCC-CCC-c---CcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCC
Confidence 65433322 22110 000 000 0 0111234899999999999999999889999999999986554
Q ss_pred cH-------HH-------HHHHHHhhC---CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchH
Q 015125 199 SA-------KY-------VKEYIEGAR---PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKG 261 (413)
Q Consensus 199 ~~-------~~-------~~~~~~~~~---~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~ 261 (413)
.. +. +-++.++++ |.+++ |. |+.+++..++ .+..|.... -.-|- ..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~i-E~---CssGG~R~D~-------g~l~~~~~~----w~SD~--td 258 (394)
T PF02065_consen 196 TEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLI-EN---CSSGGGRFDP-------GMLYYTPQS----WTSDN--TD 258 (394)
T ss_dssp TS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEE-EE----BTTBTTTSH-------HHHCCSSEE----ESBST---S
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEE-Ee---ccCCCCcccc-------chheecccc----ccCCc--cc
Confidence 31 11 112333332 43433 52 3323334432 122232210 00010 00
Q ss_pred HHHHHhccchhhhhhhcCCCCCcccccCC---cceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC
Q 015125 262 ILQEAVKGQFWRLRDAQGKPPGVMGWWPS---RAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD 338 (413)
Q Consensus 262 ~l~~~~~g~~~~~~~~~~~~~~~~~~~p~---~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g 338 (413)
.+... .+..... +...|. ..|.-.-||.+.|... +.+-+..++-|. +-+.++--.
T Consensus 259 a~~R~------~iq~g~s-----~~~p~~~~~~hv~~~p~~~~~r~~~----------l~~r~~~a~~g~-~g~e~dl~~ 316 (394)
T PF02065_consen 259 ALERL------RIQYGTS-----LFYPPEYMGAHVSASPNHQTGRTTP----------LEFRAHVAMFGR-LGLELDLTK 316 (394)
T ss_dssp HHHHH------HHHHHHC-----TTSSGGGEEEEEEHSS-TTTHHHGG----------HHHHHHHHTCSE-EEEESTGCG
T ss_pred hHHHh------hhhcccc-----cccCHHHhCCeEEeccccccCCccc----------ceechhhhhcCC-ceeccCccc
Confidence 11110 0111110 011122 1234455676664332 222222233344 445666667
Q ss_pred CchhHHHHHHHHHHHHHhC-cccCCCCeEEEEec--CCEEEEE---E-CCEEEEEEcC
Q 015125 339 WGDSIHNQIVKLMDVRRQQ-DIHSRSSIKILEAQ--SNLYSAI---I-GDKVCMKIGD 389 (413)
Q Consensus 339 w~~~l~~~i~~L~~lR~~~-p~l~~G~~~~~~~~--~~~~~~~---r-~~~~lv~lnn 389 (413)
++.+-.+.+++.+++-|+. +.++.|++..+... .+..++. . .++.+|++-.
T Consensus 317 ls~~e~~~~~~~ia~YK~~r~li~~G~~yrL~~p~~~~~~~~~~v~~d~~~av~~~~~ 374 (394)
T PF02065_consen 317 LSEEELAAVKEQIAFYKSIRPLIQSGDFYRLDSPDDSNWDAWQVVSPDKSEAVVFVFR 374 (394)
T ss_dssp S-HHHHHHHHHHHHHHHHCHHHHHHSEEEECCTTCCHCEEEEEEE-TTSSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhHHHHhcCCcEEEecCCCccceEEEEEEcCCCCEEEEEEEE
Confidence 8888889999999999987 67778888766532 2343432 2 4455554443
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A .... |
| >COG1649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.1e-05 Score=73.64 Aligned_cols=140 Identities=14% Similarity=0.086 Sum_probs=81.5
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCC--CCCCCcccC-----CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFA--PEGYLPQNL-----YSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~--~~gY~~~d~-----~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
+=+.+.+.|+.|+.||||+|+..=...+.. .....|..- ..++ ++-+=|+.+|++||++||+|+-=+-+-
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~---~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVD---PGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCC---CCCChHHHHHHHHHhcCCeeeechhhc
Confidence 667899999999999999999543222211 111112110 1122 224568999999999999998654444
Q ss_pred cCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeec
Q 015125 114 HRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFD 193 (413)
Q Consensus 114 H~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D 193 (413)
-++.... .+.. ..++|- ....+++-... ...+....=||-.+|+||++|.+.+...+..|.|||+-||
T Consensus 139 ~~a~~~s----~~~~---~~p~~~----~~~~~~~~~~~-~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfD 206 (418)
T COG1649 139 RMAPPTS----PLTK---RHPHWL----TTKRPGWVYVR-HQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFD 206 (418)
T ss_pred ccCCCCC----hhHh---hCCCCc----ccCCCCeEEEe-cCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecc
Confidence 4444211 0000 001111 00011111000 0000023347888999999999999999999999999999
Q ss_pred cc
Q 015125 194 FA 195 (413)
Q Consensus 194 ~a 195 (413)
-.
T Consensus 207 d~ 208 (418)
T COG1649 207 DY 208 (418)
T ss_pred ee
Confidence 53
|
|
| >PF07821 Alpha-amyl_C2: Alpha-amylase C-terminal beta-sheet domain; InterPro: IPR012850 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.80 E-value=8.7e-05 Score=52.49 Aligned_cols=53 Identities=58% Similarity=1.072 Sum_probs=44.0
Q ss_pred CCCCeEEEEecCCEEEEEECCEEEEEEcCCCCCCCCCCcEEeeeCCceEEeeC
Q 015125 361 SRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 413 (413)
Q Consensus 361 ~~G~~~~~~~~~~~~~~~r~~~~lv~lnn~~~~~~~~~~~~~~s~~~~~~~~~ 413 (413)
....++++..+.++++-.-+++++|-|+..+++|++.+|+++.+|..|+||.|
T Consensus 7 ~~S~v~I~~Ae~d~YaA~Id~kv~~KiGp~~~~P~~~~w~~a~~G~dyaVWek 59 (59)
T PF07821_consen 7 CRSKVKILAAEADLYAAIIDDKVIMKIGPRDWSPSGSGWKLAASGDDYAVWEK 59 (59)
T ss_dssp TT--EEEEEEETTEEEEEETTTEEEEESS-GGS---TTEEEEEEETTEEEEEE
T ss_pred CCCceEEEEecCCcEEEEECCeEEEEECCCccccCCCCcEEEeECCcEEEEeC
Confidence 46678999999999999899999999999999998889999999999999975
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C terminus. This domain is organised as a five-stranded anti-parallel beta-sheet [, ]. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0005975 carbohydrate metabolic process; PDB: 1AVA_B 1BG9_A 1AMY_A 1RP8_A 2QPU_A 3BSG_A 2QPS_A 3BSH_A 1RP9_A 1HT6_A .... |
| >PLN02635 disproportionating enzyme | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00042 Score=71.38 Aligned_cols=60 Identities=13% Similarity=0.023 Sum_probs=44.2
Q ss_pred cCCceeEEEeeecCC-CCCccHHH-HHhhhhhHHHcCCCEEEcCCCCCCC-----CCCCCCcccCCC
Q 015125 22 RNGREILFQGFNWES-CKHDWWRN-LERKVPDISKSGFTSVWLPPATHSF-----APEGYLPQNLYS 81 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~-~~~g~~~g-i~~~L~yLk~lGv~~I~L~Pi~~~~-----~~~gY~~~d~~~ 81 (413)
+...+|++|+|-=.+ ++=|||-. ..+-++.+++.|.+.++|+|+++.. ....|++.+-+.
T Consensus 27 ~R~~Gvll~l~SLps~~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S~fa 93 (538)
T PLN02635 27 RRRAGILLHPTSLPGPYGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQDANC 93 (538)
T ss_pred CcceEEEEccccCCCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcccccccc
Confidence 345689999996432 22289976 5589999999999999999999873 355666655443
|
|
| >PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00016 Score=56.33 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCcccCCCCeEEEEe----cCCEEEEEE---CCEEEEEEcCCCC
Q 015125 346 QIVKLMDVRRQQDIHSRSSIKILEA----QSNLYSAII---GDKVCMKIGDGSW 392 (413)
Q Consensus 346 ~i~~L~~lR~~~p~l~~G~~~~~~~----~~~~~~~~r---~~~~lv~lnn~~~ 392 (413)
++|+||++|+++|+|+.|....+.. ++.++++.| ++.++|++|.+..
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~ 54 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSDE 54 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCCC
Confidence 5899999999999999998877653 456777777 3577888888664
|
It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A .... |
| >cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00084 Score=65.90 Aligned_cols=148 Identities=15% Similarity=0.141 Sum_probs=81.8
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEcCCCCCCCC-----CCCCC------cccC--CCCC--CCCCCHHHHHHHHHHHHHcC
Q 015125 41 WWRNLERKVPDISKSGF--TSVWLPPATHSFA-----PEGYL------PQNL--YSLN--SSYGSEHLLKALLHKMKQHK 103 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~-----~~gY~------~~d~--~~id--~~~Gt~~~~~~Lv~~~h~~G 103 (413)
+-+.+.+.++.+++.|| ++|+|=+...... +..|. +..+ +..+ .+| .+.++||+++|++|
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~F---Pdp~~mi~~Lh~~G 98 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRW---PNPKGMIDELHEQG 98 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccC---CCHHHHHHHHHHCC
Confidence 67889999999999886 7888864222110 11121 1111 1111 122 26899999999999
Q ss_pred CEEEEEEccccCcCC-CCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcC--CCCCCCCCcCCCCCHHHHHHHHHHHHH
Q 015125 104 VRAMADIVINHRVGT-TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGST--GDNFHGVPNIDHTQHFVRKDIIAWLRW 180 (413)
Q Consensus 104 i~VilD~V~NH~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dln~~~~~vr~~l~~~~~~ 180 (413)
+||++=+.+. +..+ ++. ...+..+.. .....-.....++ .+.. ........-+|+.||++|+...+.++.
T Consensus 99 ~kv~l~v~P~-i~~~~~~~-~~~~~~~~~---~~~~g~~vk~~~G--~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~ 171 (340)
T cd06597 99 VKVLLWQIPI-IKLRPHPH-GQADNDEDY---AVAQNYLVQRGVG--KPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRY 171 (340)
T ss_pred CEEEEEecCc-cccccccc-cccchhHHH---HHHCCEEEEcCCC--CccccccccCCCceeecCCCHHHHHHHHHHHHH
Confidence 9999855442 2211 110 000101100 0000000100111 1000 011122345899999999999999999
Q ss_pred HHhhcCCCeEeecccCCC
Q 015125 181 LRNTVGFQDFRFDFARGY 198 (413)
Q Consensus 181 w~~~~gvDGfR~D~a~~i 198 (413)
++++.|||||-+|+...+
T Consensus 172 ~~~~~Gidg~w~D~~E~~ 189 (340)
T cd06597 172 LVDELGIDGFKTDGGEHV 189 (340)
T ss_pred HHHhcCCcEEEecCCCcc
Confidence 988899999999987643
|
CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00056 Score=66.28 Aligned_cols=139 Identities=12% Similarity=0.075 Sum_probs=88.3
Q ss_pred ccHHHHHhhhhhHHHcC--CCEEEcCCCCCCCCCCCCCcccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 40 DWWRNLERKVPDISKSG--FTSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lG--v~~I~L~Pi~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
.+-+.+.+.++.+++.| +++|||=.=+-. +|.-.| +..| .+|-. .++||+++|++|++|++-+.+ +++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~----~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~i~ 91 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMK----EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-YIA 91 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEeccccc----CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-CCC
Confidence 46888999999999999 677887653321 222123 5555 36653 689999999999999999876 566
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 117 GTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 117 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
.+++. |..... .++ +....++. ......+ ....-+|+.||++|+...+.++.++ +.|||||-+|..
T Consensus 92 ~~~~~----~~e~~~--~g~----~v~~~~g~--~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~-~~Gid~~~~D~~ 158 (308)
T cd06593 92 QKSPL----FKEAAE--KGY----LVKKPDGS--VWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLL-DMGVDCFKTDFG 158 (308)
T ss_pred CCchh----HHHHHH--CCe----EEECCCCC--eeeecccCCCcccccCCCHHHHHHHHHHHHHHH-HhCCcEEecCCC
Confidence 55431 111000 000 00000000 0000111 1223579999999999999999987 799999999988
Q ss_pred CCCcH
Q 015125 196 RGYSA 200 (413)
Q Consensus 196 ~~i~~ 200 (413)
..+|.
T Consensus 159 e~~p~ 163 (308)
T cd06593 159 ERIPT 163 (308)
T ss_pred CCCCc
Confidence 76654
|
YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes. |
| >cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0024 Score=61.68 Aligned_cols=136 Identities=12% Similarity=0.138 Sum_probs=84.5
Q ss_pred ccHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 40 DWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
-+-+.|.+.++.++++|| ++|+|=-=+.. ++ .| +..|+ +|- +.++||+++|++|+|+++=+-+ +++
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~--g~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~i~ 95 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET----CY--GD-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-FIN 95 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cC--Cc-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-eeC
Confidence 368899999999999995 57776431111 11 23 44553 564 4899999999999999998877 454
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 117 GTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 117 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
.+++. |.-... ...| ....++ ..+.....+ ....-+|+.||++|+...+.++.++.+.|||||-+|..
T Consensus 96 ~~s~~----~~e~~~-~g~~-----vk~~~g-~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~ 164 (303)
T cd06592 96 TDSEN----FREAVE-KGYL-----VSEPSG-DIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAG 164 (303)
T ss_pred CCCHH----HHhhhh-CCeE-----EECCCC-CCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCC
Confidence 43321 110000 0000 000111 000000111 11335899999999999999999998999999999986
Q ss_pred CC
Q 015125 196 RG 197 (413)
Q Consensus 196 ~~ 197 (413)
..
T Consensus 165 E~ 166 (303)
T cd06592 165 EA 166 (303)
T ss_pred Cc
Confidence 64
|
Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0042 Score=60.41 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=92.7
Q ss_pred ccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCC--CEEEcCCCCCC--CCCCCCCc-ccCCCCCC-CCCC
Q 015125 15 TDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGF--TSVWLPPATHS--FAPEGYLP-QNLYSLNS-SYGS 88 (413)
Q Consensus 15 ~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~--~~~~gY~~-~d~~~id~-~~Gt 88 (413)
+.++|.++-| ........ +-+.+.+.++.+++.|| ++|||- ..-. ....||.. .+ +..|+ +|-
T Consensus 3 ~p~~P~wa~G--~~~~~~~~------s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP- 71 (317)
T cd06594 3 QPELPDWAYG--GAILGLQG------GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP- 71 (317)
T ss_pred CCCCchhhhC--cEEeeeeC------CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC-
Confidence 4567888775 32222222 58999999999999765 678874 3211 01123321 12 34453 443
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCC
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQ 167 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~ 167 (413)
+.++||+++|++|++|++-+. -++..+++.. |..-.. ..+ .....++ .+.....+ ....-+|+.|
T Consensus 72 --dp~~mi~~Lh~~G~~~~~~i~-P~v~~~~~~~---y~~~~~--~g~----~vk~~~g--~~~~~~~w~g~~~~~Dftn 137 (317)
T cd06594 72 --GLDELIEELKARGIRVLTYIN-PYLADDGPLY---YEEAKD--AGY----LVKDADG--SPYLVDFGEFDCGVLDLTN 137 (317)
T ss_pred --CHHHHHHHHHHCCCEEEEEec-CceecCCchh---HHHHHH--CCe----EEECCCC--CeeeeccCCCCceeeecCC
Confidence 478999999999999999554 3444432210 111000 000 0000010 00000111 1224578999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEeecccCCCc
Q 015125 168 HFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS 199 (413)
Q Consensus 168 ~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~ 199 (413)
|++|+...+.++..+.+.|||||=+|+-..++
T Consensus 138 p~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~p 169 (317)
T cd06594 138 PAARDWFKQVIKEMLLDLGLSGWMADFGEYLP 169 (317)
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCCCCCC
Confidence 99999999999888668999999999876544
|
Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. |
| >PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0029 Score=65.51 Aligned_cols=157 Identities=14% Similarity=0.101 Sum_probs=81.5
Q ss_pred EeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCC-CCCCCCCCc----ccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015125 30 QGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATH-SFAPEGYLP----QNLYSLNSSYGSEHLLKALLHKMKQHKV 104 (413)
Q Consensus 30 ~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~-~~~~~gY~~----~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi 104 (413)
-+|..+|.++.+.....+.|+.|+++-||+|+.==..- +..+.+-.. ..+..+.-+-=..+-+|.+|++||+.||
T Consensus 105 YGfls~f~~~~~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gm 184 (559)
T PF13199_consen 105 YGFLSDFDKSKSAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGM 184 (559)
T ss_dssp EEEE---GGGGGHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-
T ss_pred ceEecCCCCcCCchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCc
Confidence 45777777777888999999999999999999732111 000000000 1122333333346889999999999999
Q ss_pred EEEEEEccccCcCCCC--CCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHH
Q 015125 105 RAMADIVINHRVGTTQ--GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLR 182 (413)
Q Consensus 105 ~VilD~V~NH~~~~~~--~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~ 182 (413)
+.|.=..+.-...+-. +.+.++..|...... ........++|. ..+-=+|..|+.-|++|++-++..+
T Consensus 185 kam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~--~~~~~~l~~~w~--------s~lyl~dP~N~~WQ~yI~~q~~~~~ 254 (559)
T PF13199_consen 185 KAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHS--NQDTYDLPDGWP--------SDLYLMDPGNPEWQNYIINQMNKAI 254 (559)
T ss_dssp EEEEEEESSEEETT--S--SS-GGBEEESSSBT--SB-EEEETT-E----------EEEEB-TT-HHHHHHHHHHHHHHH
T ss_pred ceehhHhhhccccCcccccCCchhhhhhccCCC--ccceeecCcccc--------cceEEecCCCHHHHHHHHHHHHHHH
Confidence 9997544432222211 122223223210000 000111111111 1133478899999999999999999
Q ss_pred hhcCCCeEeecccC
Q 015125 183 NTVGFQDFRFDFAR 196 (413)
Q Consensus 183 ~~~gvDGfR~D~a~ 196 (413)
+.+|+||+-+|...
T Consensus 255 ~~~gFDG~hlDq~G 268 (559)
T PF13199_consen 255 QNFGFDGWHLDQLG 268 (559)
T ss_dssp HHHT--EEEEE-S-
T ss_pred HccCCceEeeeccC
Confidence 99999999999864
|
|
| >smart00810 Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0037 Score=44.65 Aligned_cols=51 Identities=57% Similarity=0.940 Sum_probs=45.4
Q ss_pred CCCCeEEEEecCCEEEEEECCEEEEEEcC----CCCCCCCCCcEEeeeCCceEEeeC
Q 015125 361 SRSSIKILEAQSNLYSAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAVWHK 413 (413)
Q Consensus 361 ~~G~~~~~~~~~~~~~~~r~~~~lv~lnn----~~~~~~~~~~~~~~s~~~~~~~~~ 413 (413)
...+++++..+.++++-.-+++++|-|+. ++++|+ +|+...||.+|+||.+
T Consensus 7 ~~S~v~I~~Ae~dlY~A~Id~kv~~KiGp~~~~~~~~P~--~w~~a~sG~~yaVWek 61 (61)
T smart00810 7 SRSSLKILAAEADLYVAMIDEKVIMKIGPRYDVGNLIPS--GFHLAASGNDYAVWEK 61 (61)
T ss_pred CCCceEEEEecCCcEEEEeCCeEEEEECCCCCcCccCCC--CCEEEEECCCEEEEeC
Confidence 46788899999999999889999999999 477787 6999999999999975
|
This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C-terminus. This domain is organised as a five-stranded anti-parallel beta-sheet. |
| >PF13200 DUF4015: Putative glycosyl hydrolase domain | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.052 Score=52.39 Aligned_cols=132 Identities=20% Similarity=0.236 Sum_probs=80.0
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCC---CCcccC--CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEG---YLPQNL--YSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~g---Y~~~d~--~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
+-..+.+.|+.+++-|+|+|-+- -..++| |....- ..+...-....++++|+++||++||.+|.=+|.=-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVID----vKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~Fk- 85 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVID----VKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFK- 85 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEE----EecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEec-
Confidence 45678888999999999999762 222333 322210 11111112246899999999999999999998642
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 116 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 116 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
+..... ..++|. ....++ ..|. +..+..=+|.-+++||+|++++++... ..|+|.+-||-+
T Consensus 86 --D~~la~--------~~pe~a----v~~~~G--~~w~--d~~~~~WvnP~~~evw~Y~i~IA~Eaa-~~GFdEIqfDYI 146 (316)
T PF13200_consen 86 --DPVLAE--------AHPEWA----VKTKDG--SVWR--DNEGEAWVNPYSKEVWDYNIDIAKEAA-KLGFDEIQFDYI 146 (316)
T ss_pred --ChHHhh--------hChhhE----EECCCC--Cccc--CCCCCccCCCCCHHHHHHHHHHHHHHH-HcCCCEEEeeee
Confidence 111000 001111 000011 1111 112233367788999999999999997 899999999976
Q ss_pred C
Q 015125 196 R 196 (413)
Q Consensus 196 ~ 196 (413)
.
T Consensus 147 R 147 (316)
T PF13200_consen 147 R 147 (316)
T ss_pred e
Confidence 4
|
|
| >PF14488 DUF4434: Domain of unknown function (DUF4434) | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0088 Score=52.38 Aligned_cols=86 Identities=10% Similarity=0.199 Sum_probs=59.8
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR 105 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~ 105 (413)
++.+|.+.|+...+=+-+.=.+.+.+++++||+.|.|. ...-...-+.|..++.-.-..+..+-+..+.++|.+.||+
T Consensus 3 GtF~q~~~~d~~~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmk 80 (166)
T PF14488_consen 3 GTFLQPWSWDIHQNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMK 80 (166)
T ss_pred eEEEccccchhhcCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCE
Confidence 68899999875222245555678999999999999976 1111122233444422223346788899999999999999
Q ss_pred EEEEEccc
Q 015125 106 AMADIVIN 113 (413)
Q Consensus 106 VilD~V~N 113 (413)
|++-+-++
T Consensus 81 v~~Gl~~~ 88 (166)
T PF14488_consen 81 VFVGLYFD 88 (166)
T ss_pred EEEeCCCC
Confidence 99998666
|
|
| >cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37 | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.016 Score=56.37 Aligned_cols=138 Identities=15% Similarity=0.095 Sum_probs=79.0
Q ss_pred HHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 42 WRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
=+.|.+.++.+++.|| ++|||-+=+-.. .+-.-.+ ++.| .+|- +.++||+++|++|+||++-+.+- ++.+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~--~~~~~~~-f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P~-i~~~ 100 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSI--EGGKRYV-FNWNKDRFP---DPAAFVAKFHERGIRLAPNIKPG-LLQD 100 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecccccc--CCCceee-eecCcccCC---CHHHHHHHHHHCCCEEEEEeCCc-ccCC
Confidence 5678888899998886 788875421111 0100011 4444 3554 57799999999999999966444 4333
Q ss_pred CCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCC-CCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCC
Q 015125 119 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHG-VPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARG 197 (413)
Q Consensus 119 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~ 197 (413)
++ .|.-... ..+ +....++. .+.....+.+ ..-+|+.||++++...+.++..+.+.|||||=+|....
T Consensus 101 ~~----~y~e~~~--~g~----~v~~~~g~-~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 101 HP----RYKELKE--AGA----FIKPPDGR-EPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred CH----HHHHHHH--CCc----EEEcCCCC-CcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 32 1111000 000 00000000 0011111111 22478999999999999996655599999999997653
|
The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.039 Score=53.70 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=88.3
Q ss_pred ccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHH
Q 015125 15 TDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHL 91 (413)
Q Consensus 15 ~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~ 91 (413)
|.+||.++=| |+..-..-.+-+.+.+.++.+++.+| ++|||-.=+ -.+|.. ++.|+ +|- +
T Consensus 3 ~~lpP~walG-------~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~----~~~~~~---f~~d~~~FP---d 65 (317)
T cd06600 3 PALPPMWALG-------YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHY----MDSYRL---FTWDPYRFP---E 65 (317)
T ss_pred CCCCchHHHH-------HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhh----hCCCCc---eeechhcCC---C
Confidence 4456666554 22222222468888899999988775 677764311 112321 34443 443 5
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCC-CCcCCCCCHHH
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHG-VPNIDHTQHFV 170 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~~~~v 170 (413)
.++||+++|++|+||++=+.+. ++.+.. +..|... -....++...++ .+.....|.+ ..-+|+.||++
T Consensus 66 p~~~i~~l~~~g~k~~~~~~P~-i~~~~~-----~~~~~~~---~~~~~~v~~~~g--~~~~~~~w~G~~~~~Dftnp~a 134 (317)
T cd06600 66 PKKLIDELHKRNVKLVTIVDPG-IRVDQN-----YSPFLSG---MDKGKFCEIESG--ELFVGKMWPGTTVYPDFTNPDT 134 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeecc-ccCCCC-----ChHHHHH---HHCCEEEECCCC--CeEEEeecCCCccccCCCChHH
Confidence 6799999999999999966443 333211 1111100 000000110111 0000111111 22479999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEeecccCC
Q 015125 171 RKDIIAWLRWLRNTVGFQDFRFDFARG 197 (413)
Q Consensus 171 r~~l~~~~~~w~~~~gvDGfR~D~a~~ 197 (413)
++...+.++..+.+.|||||=+|....
T Consensus 135 ~~ww~~~~~~~~~~~gvdg~w~D~~Ep 161 (317)
T cd06600 135 REWWAGLFSEWLNSQGVDGIWLDMNEP 161 (317)
T ss_pred HHHHHHHHHHHhhcCCCceEEeeCCCC
Confidence 999999999888799999999998764
|
MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do |
| >PRK14582 pgaB outer membrane N-deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.14 Score=54.36 Aligned_cols=148 Identities=12% Similarity=0.104 Sum_probs=85.5
Q ss_pred CCceeEEEe---eecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCC----CCCCcccCCCCC-CCCCCHHHHHH
Q 015125 23 NGREILFQG---FNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAP----EGYLPQNLYSLN-SSYGSEHLLKA 94 (413)
Q Consensus 23 ~~~~~i~~~---f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~----~gY~~~d~~~id-~~~Gt~~~~~~ 94 (413)
++..+++|+ ++-+-.....-+.+.+.|+.|+++|+|+|+|-.+....++ .-|-|.++..+- +-|. . +.-
T Consensus 311 ~~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~-~--~aw 387 (671)
T PRK14582 311 KSPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFN-R--VAW 387 (671)
T ss_pred CCCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcC-H--HHH
Confidence 444578888 3332233356788999999999999999999876554432 234444333331 2222 1 222
Q ss_pred HHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHH
Q 015125 95 LLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDI 174 (413)
Q Consensus 95 Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l 174 (413)
.+ +|++|++|..=+-+=-.+-....... ..+... .... .....+ ...|+-.+|+||+.|
T Consensus 388 ~l--~~r~~v~v~AWmp~~~~~~~~~~~~~---------~~~~~~------~~~~--~~~~~~--~~rl~P~~pe~r~~i 446 (671)
T PRK14582 388 QL--RTRAGVNVYAWMPVLSFDLDPTLPRV---------KRLDTG------EGKA--QIHPEQ--YRRLSPFDDRVRAQV 446 (671)
T ss_pred HH--HHhhCCEEEEeccceeeccCCCcchh---------hhcccc------CCcc--ccCCCC--CcCCCCCCHHHHHHH
Confidence 22 89999999854432211110000000 001000 0000 000011 233888999999999
Q ss_pred HHHHHHHHhhcCCCeEeecc
Q 015125 175 IAWLRWLRNTVGFQDFRFDF 194 (413)
Q Consensus 175 ~~~~~~w~~~~gvDGfR~D~ 194 (413)
.++...++..+.|||+-||-
T Consensus 447 ~~i~~dla~~~~~dGilf~D 466 (671)
T PRK14582 447 GMLYEDLAGHAAFDGILFHD 466 (671)
T ss_pred HHHHHHHHHhCCCceEEecc
Confidence 99999999888999998874
|
|
| >PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.011 Score=60.22 Aligned_cols=156 Identities=15% Similarity=0.234 Sum_probs=83.0
Q ss_pred ccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHH
Q 015125 15 TDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHL 91 (413)
Q Consensus 15 ~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~ 91 (413)
+.++|.+.-| +|.=.|. ..+-+.+.+.++.+++.|| ++++|-.-+.. +|. + +..|+ +|- +
T Consensus 22 ~~~pP~walG----~~~~~~~---~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~----~~~--~-f~~d~~~FP---d 84 (441)
T PF01055_consen 22 PPLPPRWALG----FWQSRWG---YYNQDEVREVIDRYRSNGIPLDVIWIDDDYQD----GYG--D-FTWDPERFP---D 84 (441)
T ss_dssp S----GGGGS----EEEEEST---BTSHHHHHHHHHHHHHTT--EEEEEE-GGGSB----TTB--T-T-B-TTTTT---T
T ss_pred CCCCchhhhc----eEeecCc---CCCHHHHHHHHHHHHHcCCCccceeccccccc----ccc--c-ccccccccc---c
Confidence 4457777664 3332222 1247788888888888765 56665443221 111 2 34443 343 7
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCC-CCCCCCCCCeeccCCCCCCCcCCCCCC-CCCcCCCCCHH
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG-IPLSWDEHAVTSCTGGLGNGSTGDNFH-GVPNIDHTQHF 169 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~~~~ 169 (413)
.++|++.+|++|++|++-+.+. +..++. .|..+.. ...++ .....++ .......+. ...-+|+.||+
T Consensus 85 ~~~~~~~l~~~G~~~~~~~~P~-v~~~~~----~~~~~~~~~~~~~----~v~~~~g--~~~~~~~w~g~~~~~Dftnp~ 153 (441)
T PF01055_consen 85 PKQMIDELHDQGIKVVLWVHPF-VSNDSP----DYENYDEAKEKGY----LVKNPDG--SPYIGRVWPGKGGFIDFTNPE 153 (441)
T ss_dssp HHHHHHHHHHTT-EEEEEEESE-EETTTT----B-HHHHHHHHTT-----BEBCTTS--SB-EEEETTEEEEEB-TTSHH
T ss_pred hHHHHHhHhhCCcEEEEEeecc-cCCCCC----cchhhhhHhhcCc----eeecccC--CcccccccCCcccccCCCChh
Confidence 8999999999999999998884 555433 1111110 00000 0000111 000000011 13457899999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEeecccCCC
Q 015125 170 VRKDIIAWLRWLRNTVGFQDFRFDFARGY 198 (413)
Q Consensus 170 vr~~l~~~~~~w~~~~gvDGfR~D~a~~i 198 (413)
+++...+.++.+++.+|||||-+|.....
T Consensus 154 a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 154 ARDWWKEQLKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp HHHHHHHHHHHHHTTST-SEEEEESTTTB
T ss_pred HHHHHHHHHHHHHhccCCceEEeecCCcc
Confidence 99999999999997779999999995443
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A .... |
| >cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.03 Score=54.52 Aligned_cols=136 Identities=15% Similarity=0.135 Sum_probs=78.1
Q ss_pred ccHHHHHhhhhhHHHc--CCCEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 40 DWWRNLERKVPDISKS--GFTSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 40 g~~~gi~~~L~yLk~l--Gv~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
.+-+.+.+.++.+++. -+++|+|=--+ ....++ .+ ++.|+ +|- +.++||+++|++|+|||+-+. -+++
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~--~~~~~~--~~-f~~d~~~FP---dp~~mi~~L~~~G~kv~~~i~-P~v~ 91 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFY--WPKQGW--GE-WKFDPERFP---DPKAMVRELHEMNAELMISIW-PTFG 91 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechh--hcCCCc--ee-EEEChhhCC---CHHHHHHHHHHCCCEEEEEec-CCcC
Confidence 4678888888888886 45777764110 011121 12 44443 554 457999999999999999654 3344
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 117 GTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 117 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
.+++ .|..... ..+ +....++.. .. ..+ ....-+|+.||++++...+.++..+.+.|||||=+|..
T Consensus 92 ~~~~----~y~e~~~--~g~----~v~~~~g~~--~~-~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~ 158 (319)
T cd06591 92 PETE----NYKEMDE--KGY----LIKTDRGPR--VT-MQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAA 158 (319)
T ss_pred CCCh----hHHHHHH--CCE----EEEcCCCCe--ee-eeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCC
Confidence 4322 1111100 000 000000000 00 011 11345899999999998887765445999999999987
Q ss_pred CC
Q 015125 196 RG 197 (413)
Q Consensus 196 ~~ 197 (413)
..
T Consensus 159 Ep 160 (319)
T cd06591 159 EP 160 (319)
T ss_pred CC
Confidence 64
|
XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes. |
| >PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.017 Score=56.88 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=42.2
Q ss_pred CCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 38 KHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 38 ~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
+.++++...+-|.-.+++|++.|+.+=. .++ ..=...+.|++|++.||++||+||+|+-+.
T Consensus 9 ~~~~~~~~~~yi~~a~~~Gf~~iFTSL~---------------ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 9 GQSSFEENKAYIEKAAKYGFKRIFTSLH---------------IPEDDPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp CCS-HHHHHHHHHHHHCTTEEEEEEEE------------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEECCCC---------------cCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 3446888888888899999999996521 111 111236789999999999999999999443
|
The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A. |
| >COG3589 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.048 Score=52.15 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=44.6
Q ss_pred eEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 015125 27 ILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRA 106 (413)
Q Consensus 27 ~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~V 106 (413)
.-+-+|.|. +....-++-|+...+.|++.|+.+=.......+ +-..-|++|++.|++.||+|
T Consensus 4 ~GfSifp~~----~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~--------------~~~~~~~ell~~Anklg~~v 65 (360)
T COG3589 4 LGFSIFPNR----SPKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAE--------------LYFHRFKELLKEANKLGLRV 65 (360)
T ss_pred eeEEeccCC----CcchhHHHHHHHHHHcCccceeeecccCCchHH--------------HHHHHHHHHHHHHHhcCcEE
Confidence 345556654 234455566666778899988864322221111 23466999999999999999
Q ss_pred EEEEcc
Q 015125 107 MADIVI 112 (413)
Q Consensus 107 ilD~V~ 112 (413)
|+|+-+
T Consensus 66 ivDvnP 71 (360)
T COG3589 66 IVDVNP 71 (360)
T ss_pred EEEcCH
Confidence 999833
|
|
| >PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.028 Score=53.11 Aligned_cols=80 Identities=18% Similarity=0.276 Sum_probs=54.0
Q ss_pred CCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC--CCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 015125 23 NGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA--PEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h 100 (413)
.|++|-.+.|+... . .-.-+.+-++.||++|+|+|=|+-..+... ..+| .+++ ...+.|+++|+.|+
T Consensus 4 ~G~~v~~~G~n~~w-~--~~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~------~~~~--~~~~~ld~~v~~a~ 72 (281)
T PF00150_consen 4 NGKPVNWRGFNTHW-Y--NPSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY------NYDE--TYLARLDRIVDAAQ 72 (281)
T ss_dssp TSEBEEEEEEEETT-S--GGGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT------SBTH--HHHHHHHHHHHHHH
T ss_pred CCCeEEeeeeeccc-C--CCCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc------cccH--HHHHHHHHHHHHHH
Confidence 57788888888761 0 112788899999999999998865432110 1111 1111 23578999999999
Q ss_pred HcCCEEEEEEccc
Q 015125 101 QHKVRAMADIVIN 113 (413)
Q Consensus 101 ~~Gi~VilD~V~N 113 (413)
++||+||+|+--.
T Consensus 73 ~~gi~vild~h~~ 85 (281)
T PF00150_consen 73 AYGIYVILDLHNA 85 (281)
T ss_dssp HTT-EEEEEEEES
T ss_pred hCCCeEEEEeccC
Confidence 9999999998443
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A .... |
| >PRK10426 alpha-glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.12 Score=55.15 Aligned_cols=140 Identities=10% Similarity=0.079 Sum_probs=77.6
Q ss_pred HHHHHhhhhhHHHcC--CCEEEcCCCCCCC--CCCCCCcc-cCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 42 WRNLERKVPDISKSG--FTSVWLPPATHSF--APEGYLPQ-NLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 42 ~~gi~~~L~yLk~lG--v~~I~L~Pi~~~~--~~~gY~~~-d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
-+.+.+.++.+++.| +++|||-- .... ...|...- | +..| .+| .+.++||+++|++|+||++=+-+. +
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~ldd-w~~~~~~~~g~~~~~~-~~~d~~~F---Pdp~~mi~~L~~~G~k~v~~i~P~-v 293 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQD-WSGIRMTSFGKRLMWN-WKWDSERY---PQLDSRIKQLNEEGIQFLGYINPY-L 293 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEec-cccccccccccccccc-ceEChhhC---CCHHHHHHHHHHCCCEEEEEEcCc-c
Confidence 567888999999988 58899841 1110 01111110 1 2333 233 257889999999999999887554 2
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecc
Q 015125 116 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (413)
Q Consensus 116 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~ 194 (413)
..+++ .|..-.. ........++. ......+ ....-+|+.||++|+...+.++..+.+.|||||=+|.
T Consensus 294 ~~~~~----~y~e~~~------~gy~vk~~~g~--~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~ 361 (635)
T PRK10426 294 ASDGD----LCEEAAE------KGYLAKDADGG--DYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADF 361 (635)
T ss_pred CCCCH----HHHHHHH------CCcEEECCCCC--EEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeC
Confidence 22221 1110000 00000000000 0000000 0112478999999999999887555599999999997
Q ss_pred cCCCc
Q 015125 195 ARGYS 199 (413)
Q Consensus 195 a~~i~ 199 (413)
...+|
T Consensus 362 ~E~~p 366 (635)
T PRK10426 362 GEYLP 366 (635)
T ss_pred CCCCC
Confidence 65443
|
|
| >cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.15 Score=50.17 Aligned_cols=135 Identities=12% Similarity=0.112 Sum_probs=78.9
Q ss_pred ccHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 40 DWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
.+-+.+.+.++.+++.|| ++|||-+-+.. +|.. ++.|+ +|- +.++|++++|++|++|++=+.+ |+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~---f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~v~ 89 (339)
T cd06604 21 YPEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRV---FTWDKERFP---DPKELIKELHEQGFKVVTIIDP-GVK 89 (339)
T ss_pred CCHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCc---eeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-cee
Confidence 367888899999998886 67887543221 2321 34443 554 4689999999999999976544 232
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCC-CCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 117 GTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFH-GVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 117 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
.+. .|..|... -....+....++ .+.....+. ...-+|+.||++++...+.++..+ +.|||||=+|..
T Consensus 90 ~~~-----~~~~~~e~---~~~g~~v~~~~g--~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D~~ 158 (339)
T cd06604 90 VDP-----GYDVYEEG---LENDYFVKDPDG--ELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DLGVDGIWNDMN 158 (339)
T ss_pred CCC-----CChHHHHH---HHCCeEEECCCC--CEEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hCCCceEeecCC
Confidence 211 11111100 000000000011 000000111 122368999999999999999987 899999999976
Q ss_pred C
Q 015125 196 R 196 (413)
Q Consensus 196 ~ 196 (413)
.
T Consensus 159 E 159 (339)
T cd06604 159 E 159 (339)
T ss_pred C
Confidence 4
|
Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source. |
| >cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.088 Score=51.72 Aligned_cols=142 Identities=10% Similarity=0.129 Sum_probs=79.5
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 41 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+-+.+.+.++.+++.|| ++|||-.-+- .+|. + ++.|+ +|-.+. -++||+++|++|+||++=+.+. +..
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~----~~~~--~-f~~d~~~FPdp~-~~~mi~~L~~~G~k~~~~i~P~-v~~ 92 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYM----DRRR--D-FTLDPVRFPGLK-MPEFVDELHANGQHYVPILDPA-ISA 92 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECcccc----cCcc--c-eecccccCCCcc-HHHHHHHHHHCCCEEEEEEeCc-ccc
Confidence 56788888888888775 6777643111 1121 2 33443 343221 2899999999999999976543 333
Q ss_pred CCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccC
Q 015125 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (413)
Q Consensus 118 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~ 196 (413)
+.. .+.|..|... -....++...++ .......+ ....-+|+.||++++...+.++.++.+.|||||=+|...
T Consensus 93 ~~~--~~~~~~~~e~---~~~g~~v~~~~g--~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 93 NEP--TGSYPPYDRG---LEMDVFIKNDDG--SPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred CcC--CCCCHHHHHH---HHCCeEEECCCC--CEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 211 1112222110 000000000010 00000011 112336899999999999999998878999999999876
Q ss_pred CC
Q 015125 197 GY 198 (413)
Q Consensus 197 ~i 198 (413)
..
T Consensus 166 p~ 167 (339)
T cd06602 166 PS 167 (339)
T ss_pred Cc
Confidence 43
|
MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of |
| >PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.029 Score=57.95 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=29.7
Q ss_pred CCccH-HHHHhhhhhHHHcCCCEEEcCCCCCCCC--CCCCCcccCCCCCCCC
Q 015125 38 KHDWW-RNLERKVPDISKSGFTSVWLPPATHSFA--PEGYLPQNLYSLNSSY 86 (413)
Q Consensus 38 ~~g~~-~gi~~~L~yLk~lGv~~I~L~Pi~~~~~--~~gY~~~d~~~id~~~ 86 (413)
+=||| ..+.+-++.+++.|+..++|.|+++... ++.|.+.+-+.++|-|
T Consensus 13 GIGDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPly 64 (496)
T PF02446_consen 13 GIGDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLY 64 (496)
T ss_dssp SS--SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGG
T ss_pred ceecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHH
Confidence 34799 9999999999999999999999998652 3489988888887554
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A. |
| >TIGR00217 malQ 4-alpha-glucanotransferase | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.14 Score=53.07 Aligned_cols=48 Identities=8% Similarity=-0.077 Sum_probs=36.5
Q ss_pred cCCceeEEEeeecCCC-CCccHHHHH-hhhhhHHHcCCCEEEcCCCCCCC
Q 015125 22 RNGREILFQGFNWESC-KHDWWRNLE-RKVPDISKSGFTSVWLPPATHSF 69 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~-~~g~~~gi~-~~L~yLk~lGv~~I~L~Pi~~~~ 69 (413)
+...||++|++-=.+. +=|||-.+. .-++.+++.|....+|.|+++..
T Consensus 13 ~R~~Gvll~l~SL~s~~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~~ 62 (513)
T TIGR00217 13 KRKSGILLQLYSLPSEWGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPAD 62 (513)
T ss_pred CCceEEEeccccCCCCCCccChHHHHHHHHHHHHHcCCcEEEeCCCCCCC
Confidence 4567899999864433 228999888 66688888888888899988753
|
This enzyme is known as amylomaltase and disproportionating enzyme. |
| >cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.19 Score=47.09 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCC
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQ 167 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~ 167 (413)
+++++++.++.+|++|+||++=+--+|.+... ....+
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~-------------------------------------------~~~~~ 85 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF-------------------------------------------ANNLS 85 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc-------------------------------------------cccCC
Confidence 46889999999999999999987544432210 01124
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEeecc
Q 015125 168 HFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (413)
Q Consensus 168 ~~vr~~l~~~~~~w~~~~gvDGfR~D~ 194 (413)
++-++.+.+.+..++.++|+||+=+|-
T Consensus 86 ~~~~~~fa~~l~~~v~~yglDGiDiD~ 112 (255)
T cd06542 86 DAAAKAYAKAIVDTVDKYGLDGVDFDD 112 (255)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEee
Confidence 555777777887788899999999996
|
The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B. |
| >cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.13 Score=50.02 Aligned_cols=137 Identities=9% Similarity=0.079 Sum_probs=78.7
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEcCCCCCC-CC-CCCCCcccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 41 WWRNLERKVPDISKSGF--TSVWLPPATHS-FA-PEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~-~~-~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
+-+.+.+.++.+++.|| ++|+|-.=+-. .. ...|. + ++.| .+|-. .++||+++|++|++|++=+.+- +
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FPd---p~~mi~~L~~~G~k~~~~v~P~-v 94 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFPD---PAGMIADLAKKGVKTIVITEPF-V 94 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCCC---HHHHHHHHHHcCCcEEEEEcCc-c
Confidence 57888889999988775 67777542211 00 01121 2 3444 35543 5789999999999999987543 3
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecc
Q 015125 116 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (413)
Q Consensus 116 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~ 194 (413)
..+++ .|..... ..+ -+....++ .+.....+ ....-+|+.||++++...+.++.+. +.|||||=+|.
T Consensus 95 ~~~~~----~y~e~~~--~g~---l~~~~~~~--~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~-~~Gvdg~w~D~ 162 (317)
T cd06598 95 LKNSK----NWGEAVK--AGA---LLKKDQGG--VPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLI-DQGVTGWWGDL 162 (317)
T ss_pred cCCch----hHHHHHh--CCC---EEEECCCC--CEeeeeccCCCccccCCCCHHHHHHHHHHHHHhh-hCCccEEEecC
Confidence 33332 1110000 000 00100000 00000001 1123467789999999999998885 99999999998
Q ss_pred cC
Q 015125 195 AR 196 (413)
Q Consensus 195 a~ 196 (413)
..
T Consensus 163 ~E 164 (317)
T cd06598 163 GE 164 (317)
T ss_pred CC
Confidence 65
|
CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PRK10658 putative alpha-glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.075 Score=56.82 Aligned_cols=137 Identities=11% Similarity=0.074 Sum_probs=76.8
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 41 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+=+.+.+-++-+++.|| ++|+|-..+- .+|.-.+ +..|+ +|- +.++||+++|++|+||++=+.+ +++.
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~----~~~~~~~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~i~P-~i~~ 351 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWM----KEFQWCD-FEWDPRTFP---DPEGMLKRLKAKGLKICVWINP-YIAQ 351 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhh----cCCceee-eEEChhhCC---CHHHHHHHHHHCCCEEEEeccC-CcCC
Confidence 34557777777887776 4455433111 1121112 33442 333 4578999999999999987655 3443
Q ss_pred CCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccC
Q 015125 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (413)
Q Consensus 118 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~ 196 (413)
+++. |... -....+....+ +.++....| ....-+|+.||++|+...+.++.++ +.|||||-.|...
T Consensus 352 ~s~~-------f~e~---~~~gy~vk~~~--G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~-d~Gvdgfw~D~gE 418 (665)
T PRK10658 352 KSPL-------FKEG---KEKGYLLKRPD--GSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLL-DMGVDCFKTDFGE 418 (665)
T ss_pred CchH-------HHHH---HHCCeEEECCC--CCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHH-hcCCcEEEecCCc
Confidence 3221 1100 00000011011 111111111 2234579999999999999999987 8999999999765
Q ss_pred CCc
Q 015125 197 GYS 199 (413)
Q Consensus 197 ~i~ 199 (413)
.+|
T Consensus 419 ~~p 421 (665)
T PRK10658 419 RIP 421 (665)
T ss_pred eee
Confidence 444
|
|
| >COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.049 Score=57.16 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=47.6
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCC--cHHHHHHHHHhhCC-CeEEEc
Q 015125 158 HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY--SAKYVKEYIEGARP-IFSVGE 218 (413)
Q Consensus 158 ~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i--~~~~~~~~~~~~~~-~~~vgE 218 (413)
.++.-+..+.+.|-+.--.-+..|+++==|||+|+|.+..+ |..+++.+.+.+.+ .+++-|
T Consensus 268 n~L~glRvEd~~VF~~tH~li~~L~~eglidGlRIDHiDGLaDP~gYl~rLR~~~G~~~~I~VE 331 (889)
T COG3280 268 NSLAGLRVEDPAVFEATHRLIFELLREGLIDGLRIDHIDGLADPKGYLRRLRQLVGPDRYIVVE 331 (889)
T ss_pred cchheeeeccHHHHHHHHHHHHHHHHhccccceeecccccccCHHHHHHHHHHhcCCCcEEEEe
Confidence 56777888999999888888999997777999999999887 45677777776653 334334
|
|
| >PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.33 Score=47.29 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=35.7
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+.++.||+.|+|.|=|=-.... .+ ..+-+.+...+|.++|++.||+|+||+
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~P--------~~-----~g~~~~~~~~~~akrak~~Gm~vlldf 78 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVNP--------YD-----GGYNDLEDVIALAKRAKAAGMKVLLDF 78 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS---------TT-----TTTTSHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCHHHHHHhcCCCeEEEEeccCC--------cc-----cccCCHHHHHHHHHHHHHCCCeEEEee
Confidence 56888999999999755221111 11 455678999999999999999999999
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A .... |
| >cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.66 Score=45.72 Aligned_cols=126 Identities=9% Similarity=0.002 Sum_probs=72.8
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCC-------CCCCCHHHHHHHHHHHHHcCCEEEEEE-cc
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN-------SSYGSEHLLKALLHKMKQHKVRAMADI-VI 112 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id-------~~~Gt~~~~~~Lv~~~h~~Gi~VilD~-V~ 112 (413)
..+.|.+.++.++.+++|.++|-=- . ...+.+.+..|=.+. ..+=|.+|+++||+-|.++||.||-.+ ++
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~Hlt-D-d~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~P 93 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHIT-D-SQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDTP 93 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeEE-c-CCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccCc
Confidence 3778888999999999999997410 0 001111111111111 112289999999999999999999777 45
Q ss_pred ccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcC
Q 015125 113 NHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG 186 (413)
Q Consensus 113 NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~g 186 (413)
.|+..-... | +.....+ ...+.. .+.-.....||..+|++.+++.+++...++-|.
T Consensus 94 GH~~a~~~~----~-------p~l~~~~----~~~~~~---~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~ 149 (348)
T cd06562 94 GHTGSWGQG----Y-------PELLTGC----YAVWRK---YCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFP 149 (348)
T ss_pred hhhHHHHHh----C-------hhhhCCC----Cccccc---cccCCCCccccCCChhHHHHHHHHHHHHHHhcC
Confidence 666552110 0 0000000 000000 000011234889999999999999999886554
|
The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in |
| >KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.89 Score=48.78 Aligned_cols=152 Identities=14% Similarity=0.160 Sum_probs=87.8
Q ss_pred cccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCC--EEEcCCCCCCCCCCCCCcccCCCCC-CCCCCHH
Q 015125 14 QTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFT--SVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEH 90 (413)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~--~I~L~Pi~~~~~~~gY~~~d~~~id-~~~Gt~~ 90 (413)
.|.++|+|+-| +|.--|. -++++.+++..+..+++||. .+| ..-++==.-.| |.+| ..|++
T Consensus 289 ~P~m~pYWslG----f~~~Rwg---Y~nls~~~dvv~~~~~agiPld~~~------~DiDyMd~ykD-FTvd~~~fp~-- 352 (805)
T KOG1065|consen 289 RPAMPPYWSLG----FQLCRWG---YKNLSVVRDVVENYRAAGIPLDVIV------IDIDYMDGYKD-FTVDKVWFPD-- 352 (805)
T ss_pred CccCCchhhcc----ceecccc---cccHHHHHHHHHHHHHcCCCcceee------eehhhhhcccc-eeeccccCcc--
Confidence 35667888654 4443332 34689999999999999984 444 11111101355 3444 45665
Q ss_pred HHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeec--cCCCCCCC-cCCCCC-CCCCcCCCC
Q 015125 91 LLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTS--CTGGLGNG-STGDNF-HGVPNIDHT 166 (413)
Q Consensus 91 ~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~-~~~~dln~~ 166 (413)
++.+++.+|++|+|+|+=+=++-... ..|..|.. ...+. ..+..+.. ..+.-+ ....=.|+.
T Consensus 353 -~~~fv~~Lh~~G~kyvliidP~is~~------~~y~~y~~-------g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDft 418 (805)
T KOG1065|consen 353 -LKDFVDDLHARGFKYVLIIDPFISTN------SSYGPYDR-------GVAKDVLIKNREGSPKMLGEVWPGSTAFPDFT 418 (805)
T ss_pred -hHHHHHHHHhCCCeEEEEeCCccccC------ccchhhhh-------hhhhceeeecccCchhhhcccCCCcccccccC
Confidence 99999999999999986443221111 11222211 10000 00000000 011111 122335788
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 167 QHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 167 ~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
||++.....+-++.+-++.++||+=+|+-
T Consensus 419 np~~~~Ww~~~~~~fh~~vp~dg~wiDmn 447 (805)
T KOG1065|consen 419 NPAVVEWWLDELKRFHDEVPFDGFWIDMN 447 (805)
T ss_pred CchHHHHHHHHHHhhcccCCccceEEECC
Confidence 99999999998888888999999999983
|
|
| >PRK11052 malQ 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.22 Score=53.40 Aligned_cols=44 Identities=18% Similarity=0.156 Sum_probs=37.6
Q ss_pred CceeEEEeeecCCCCC---ccHHHHHhhhhhHHHcCCCEEEcCCCCC
Q 015125 24 GREILFQGFNWESCKH---DWWRNLERKVPDISKSGFTSVWLPPATH 67 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~---g~~~gi~~~L~yLk~lGv~~I~L~Pi~~ 67 (413)
.-|+++|+|-=.+..+ |||..+.+-++.+++.|.+.+.|+|++.
T Consensus 143 ~wGv~~qlySLrs~~~~GIGDfgdl~~l~d~~a~~G~~~~qlnPlha 189 (695)
T PRK11052 143 LWGACVQLYTLRSEHNWGIGDFGDLKQMLEDVAKRGGDFIGLNPIHA 189 (695)
T ss_pred ceEEEeccccCCCCCCCCeecHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 3588999997554334 8999999999999999999999999994
|
|
| >COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.99 Score=46.45 Aligned_cols=47 Identities=11% Similarity=-0.077 Sum_probs=36.1
Q ss_pred CCceeEEEeeecCCCCC---ccHHHHHhhhhhHH-HcCCCEEEcCCCCCCC
Q 015125 23 NGREILFQGFNWESCKH---DWWRNLERKVPDIS-KSGFTSVWLPPATHSF 69 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~~---g~~~gi~~~L~yLk-~lGv~~I~L~Pi~~~~ 69 (413)
+.+++-+|++.=.+.+. |||-.+.-++.-.. +-|.+.+.|+|++...
T Consensus 12 ~~~g~~v~L~~~~~~~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~~ 62 (520)
T COG1640 12 MKWGSGVQLYSLRLPGSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHATG 62 (520)
T ss_pred ccccceeEEeeeccCCCCCccchhhHHHHHHHHHHHccCCeEEeccCCccc
Confidence 44566667776555555 89999998888776 9999999999998654
|
|
| >cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.63 Score=43.96 Aligned_cols=94 Identities=11% Similarity=0.166 Sum_probs=65.3
Q ss_pred ccHHHHHhhhhhHHHcC--CCEEEcCCCCCCCCCCCCCcccC-CCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 40 DWWRNLERKVPDISKSG--FTSVWLPPATHSFAPEGYLPQNL-YSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lG--v~~I~L~Pi~~~~~~~gY~~~d~-~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
.+-+.+.+.++.+++.| +++|+|-+-+... | .++ +..| .+|- +.++||+++|++|++|++-+.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----~--~~f~~~~d~~~Fp---dp~~~i~~l~~~g~~~~~~~~P--- 88 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG----Y--GDFTFDWDAGKFP---NPKSMIDELHDNGVKLVLWIDP--- 88 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECcccccC----C--ceeeeecChhhCC---CHHHHHHHHHHCCCEEEEEeCh---
Confidence 46888999999998855 5678876543321 1 221 2444 3554 3688999999999999996622
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 116 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 116 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
.||+...+.++..+.+.|||||=+|..
T Consensus 89 -----------------------------------------------------~v~~w~~~~~~~~~~~~Gvdg~w~D~~ 115 (265)
T cd06589 89 -----------------------------------------------------YIREWWAEVVKKLLVSLGVDGFWTDMG 115 (265)
T ss_pred -----------------------------------------------------hHHHHHHHHHHHhhccCCCCEEeccCC
Confidence 226666777776645999999999987
Q ss_pred CCC
Q 015125 196 RGY 198 (413)
Q Consensus 196 ~~i 198 (413)
...
T Consensus 116 E~~ 118 (265)
T cd06589 116 EPS 118 (265)
T ss_pred CCC
Confidence 554
|
All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes |
| >PLN02950 4-alpha-glucanotransferase | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.31 Score=53.92 Aligned_cols=72 Identities=21% Similarity=0.220 Sum_probs=60.3
Q ss_pred CCceeEEEeeecCCCCC---ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC------CCCCCcccCCCCCCCCCCHHHHH
Q 015125 23 NGREILFQGFNWESCKH---DWWRNLERKVPDISKSGFTSVWLPPATHSFA------PEGYLPQNLYSLNSSYGSEHLLK 93 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~~---g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~------~~gY~~~d~~~id~~~Gt~~~~~ 93 (413)
.+.|+++|+|-=.+..+ |||..+.+-++.+++.|.+.|+|+|+++... +..|++.+-++++|-|=+.+++.
T Consensus 260 R~~Gi~~~l~SLrS~~s~GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~~l~ 339 (909)
T PLN02950 260 RGAGVAVPVFSIRSEEDVGVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALS 339 (909)
T ss_pred cceEEEEecccCCCCCCCCeeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHHHHH
Confidence 45689999997655543 8999999999999999999999999998652 24899999999999998887764
Q ss_pred H
Q 015125 94 A 94 (413)
Q Consensus 94 ~ 94 (413)
+
T Consensus 340 ~ 340 (909)
T PLN02950 340 E 340 (909)
T ss_pred h
Confidence 3
|
|
| >cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.38 Score=46.17 Aligned_cols=148 Identities=13% Similarity=0.070 Sum_probs=82.9
Q ss_pred ccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCC--CEEEcCCCCCC-CC----CCCCCcccCCCCCC-CC
Q 015125 15 TDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGF--TSVWLPPATHS-FA----PEGYLPQNLYSLNS-SY 86 (413)
Q Consensus 15 ~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~-~~----~~gY~~~d~~~id~-~~ 86 (413)
+.+||.++=| |+++-....+-+.+.+-++.+++.|| ++|||=.=+.. .. ..+|.. ++.|+ +|
T Consensus 4 ~~~~P~walG-------~~qsr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~---ft~d~~~F 73 (292)
T cd06595 4 IPLLPRYAFG-------NWWSRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTG---YSWNRKLF 73 (292)
T ss_pred CCCCchHHHH-------hHhhCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcce---eEEChhcC
Confidence 3456666543 33332222367888899999988665 66766221111 00 012221 44543 55
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCC
Q 015125 87 GSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHT 166 (413)
Q Consensus 87 Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 166 (413)
- +.++||+++|++|+|||+-+.+.. +.+.. ...|..+... .... .. -....-+|+.
T Consensus 74 P---dp~~mi~~Lh~~G~k~v~~v~P~~-~~~~~--~~~y~~~~~~-~~~~--------~~---------~~~~~~~D~t 129 (292)
T cd06595 74 P---DPEKLLQDLHDRGLKVTLNLHPAD-GIRAH--EDQYPEMAKA-LGVD--------PA---------TEGPILFDLT 129 (292)
T ss_pred C---CHHHHHHHHHHCCCEEEEEeCCCc-ccCCC--cHHHHHHHHh-cCCC--------cc---------cCCeEEecCC
Confidence 4 568999999999999999886642 21110 0112111110 0000 00 0011246899
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEeecccC
Q 015125 167 QHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (413)
Q Consensus 167 ~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~ 196 (413)
||+.++...+.++.-+.+.||||+=.|...
T Consensus 130 np~a~~~w~~~~~~~~~~~Gidg~W~D~~E 159 (292)
T cd06595 130 NPKFMDAYFDNVHRPLEKQGVDFWWLDWQQ 159 (292)
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEecCCC
Confidence 999998776666555559999999999643
|
Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PLN03236 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.32 Score=52.17 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=59.1
Q ss_pred CceeEEEeeecCCCCC---ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-----C-CCCCcccCCCCCCCCCCHHHHH
Q 015125 24 GREILFQGFNWESCKH---DWWRNLERKVPDISKSGFTSVWLPPATHSFA-----P-EGYLPQNLYSLNSSYGSEHLLK 93 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~---g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-----~-~gY~~~d~~~id~~~Gt~~~~~ 93 (413)
+.|+++|+|-=.+.++ |||-.+.+-++.+++.|.+.|+|+|+++... . ..|++.+-++++|-|=+.+++.
T Consensus 61 ~aGill~l~SLrS~~s~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~ 139 (745)
T PLN03236 61 GSGMALPVFSLRSAESVGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELV 139 (745)
T ss_pred hheeeeccccCCCCCCCCcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhh
Confidence 4689999997665544 7999999999999999999999999998752 2 4899999999998888876664
|
|
| >smart00632 Aamy_C Aamy_C domain | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.47 Score=36.11 Aligned_cols=35 Identities=17% Similarity=0.058 Sum_probs=26.5
Q ss_pred cCCEEEEEECCEEEEEEcCCCCC--------CCCCCcEEeeeC
Q 015125 371 QSNLYSAIIGDKVCMKIGDGSWC--------PAGKEWTLATSG 405 (413)
Q Consensus 371 ~~~~~~~~r~~~~lv~lnn~~~~--------~~~~~~~~~~s~ 405 (413)
++++++|.|+++.+|+||++... .+.+.|+++++|
T Consensus 7 ~~~~laF~Rg~~g~VaiN~~~~~~~~~~~t~lp~G~Y~d~l~g 49 (81)
T smart00632 7 GDNQIAFERGSKGFVAINRSDSDLTITLQTSLPAGTYCDVISG 49 (81)
T ss_pred CCeEEEEECCCeEEEEEECCCCceEEEEeecCCCcceEEEecC
Confidence 44599999999999999995421 234678888883
|
|
| >cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.6 Score=42.29 Aligned_cols=124 Identities=10% Similarity=0.075 Sum_probs=71.9
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCC---C--CCCCCHHHHHHHHHHHHHcCCEEEEEE-cccc
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSL---N--SSYGSEHLLKALLHKMKQHKVRAMADI-VINH 114 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~i---d--~~~Gt~~~~~~Lv~~~h~~Gi~VilD~-V~NH 114 (413)
..+.|.+.|+.++.+++|.+++.=. +. ..+.+.+..|=.+ . ..+=|.+|+++||+-|.++||+||-.+ ++.|
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~Hlt-Dd-~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH 93 (311)
T cd06570 16 PVAVIKRQLDAMASVKLNVFHWHLT-DD-QGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGH 93 (311)
T ss_pred CHHHHHHHHHHHHHhCCeEEEEEEe-cC-CCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccc
Confidence 4788889999999999998887410 00 0111111111111 1 112379999999999999999999776 4566
Q ss_pred CcCCCCCCCCcccccCCCCCCCCCCCe-eccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhc
Q 015125 115 RVGTTQGHGGKYNRYDGIPLSWDEHAV-TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTV 185 (413)
Q Consensus 115 ~~~~~~~~~~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~ 185 (413)
+..-.. .| +.....+. ......++ ..-+.||..+|++.+++.+++..+++-|
T Consensus 94 ~~a~~~----~y-------pel~~~~~~~~~~~~~~--------~~~~~l~~~~p~t~~f~~~l~~E~~~lF 146 (311)
T cd06570 94 ASAIAV----AY-------PELASGPGPYVIERGWG--------VFEPLLDPTNEETYTFLDNLFGEMAELF 146 (311)
T ss_pred hHHHHH----hC-------HHhccCCCccccccccc--------cCCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 654110 01 00000000 00000010 1123589999999999999999887444
|
Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
| >cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex) | Back alignment and domain information |
|---|
Probab=91.73 E-value=1.6 Score=42.72 Aligned_cols=126 Identities=10% Similarity=0.045 Sum_probs=73.3
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCC------------CCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN------------SSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id------------~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
..+.|.+.||.++..++|.++|.--=. ..+...+..|=.+. ..+=|.+|+++||+-|.++||+||-
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~--~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDD--QGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecC--CcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 478888999999999999999854211 01121211111111 1222799999999999999999997
Q ss_pred EE-ccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcC
Q 015125 109 DI-VINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG 186 (413)
Q Consensus 109 D~-V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~g 186 (413)
.+ ++.|+..-.. .| +..... +.......+.-.....||..+|++.+++.++++..++-|.
T Consensus 94 EiD~PGH~~a~~~----~~-------p~l~~~-------~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~ 154 (329)
T cd06568 94 EIDMPGHTNAALA----AY-------PELNCD-------GKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTP 154 (329)
T ss_pred ecCCcHHHHHHHH----hC-------hhhccC-------CCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCC
Confidence 66 3455543110 01 000000 0000000000011246899999999999999998885443
|
SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. |
| >PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.35 Score=48.17 Aligned_cols=123 Identities=13% Similarity=0.101 Sum_probs=69.1
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCC--HHHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGS--EHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt--~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
-+.+.+.+.-+|++|||.|-|..+.= -.++|.=|. -+.|.++++.|+++||+|||-+.. +..
T Consensus 9 ~e~~~~d~~~m~~~G~n~vri~~~~W------------~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~-~~~--- 72 (374)
T PF02449_consen 9 EEEWEEDLRLMKEAGFNTVRIGEFSW------------SWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPT-AAP--- 72 (374)
T ss_dssp CCHHHHHHHHHHHHT-SEEEE-CCEH------------HHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECT-TTS---
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEech------------hhccCCCCeeecHHHHHHHHHHHhccCeEEEEecc-ccc---
Confidence 46677889999999999999876521 122222222 345889999999999999997751 111
Q ss_pred CCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcC----CCeEeeccc
Q 015125 120 QGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG----FQDFRFDFA 195 (413)
Q Consensus 120 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~g----vDGfR~D~a 195 (413)
| .|+....++.. . .+..+.. ..+......++.+|.+|+++.+.++..++.++ |-|+-+|.=
T Consensus 73 P------~Wl~~~~Pe~~----~--~~~~g~~---~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE 137 (374)
T PF02449_consen 73 P------AWLYDKYPEIL----P--VDADGRR---RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNE 137 (374)
T ss_dssp -------HHHHCCSGCCC-------B-TTTSB---EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCS
T ss_pred c------cchhhhccccc----c--cCCCCCc---CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccc
Confidence 1 11111000100 0 0001100 01222344677899999998888877766555 668888764
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A. |
| >cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas | Back alignment and domain information |
|---|
Probab=91.17 E-value=1.6 Score=40.84 Aligned_cols=81 Identities=9% Similarity=0.152 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCH
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQH 168 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~ 168 (413)
..++..+++.||++|++|++=+- ++... . +. --..++
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~-----------------~---------------------~~----~~~~~~ 81 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPP-----------------E---------------------FT----AALNDP 81 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCC-----------------c---------------------ch----hhhcCH
Confidence 45789999999999999998542 11000 0 00 012468
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEeecccCCCc-----HHHHHHHHHhhCC
Q 015125 169 FVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-----AKYVKEYIEGARP 212 (413)
Q Consensus 169 ~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~-----~~~~~~~~~~~~~ 212 (413)
+.|+.+++.+..+++++|.||+-+|-=.... ..|++++.++++.
T Consensus 82 ~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~Lr~~l~~ 130 (253)
T cd06545 82 AKRKALVDKIINYVVSYNLDGIDVDLEGPDVTFGDYLVFIRALYAALKK 130 (253)
T ss_pred HHHHHHHHHHHHHHHHhCCCceeEEeeccCccHhHHHHHHHHHHHHHhh
Confidence 8899999988888899999999999743322 3467777777653
|
|
| >cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.73 Score=45.09 Aligned_cols=110 Identities=13% Similarity=0.120 Sum_probs=72.3
Q ss_pred ccHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 40 DWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
.+-+.+.+.++.+++.+| ++|||=.=+- .+|. -++.| .+|-. .++|++++|+.|++||+-+.+- +.
T Consensus 21 ~~~~ev~~v~~~~r~~~IP~D~i~lDidy~----~~~~---~Ft~d~~~FPd---p~~mv~~L~~~G~klv~~i~P~-i~ 89 (332)
T cd06601 21 SNRSDLEEVVEGYRDNNIPLDGLHVDVDFQ----DNYR---TFTTNGGGFPN---PKEMFDNLHNKGLKCSTNITPV-IS 89 (332)
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEcCchh----cCCC---ceeecCCCCCC---HHHHHHHHHHCCCeEEEEecCc-ee
Confidence 367778888888887665 6777654211 1332 24455 36644 4789999999999999877433 11
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccC
Q 015125 117 GTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (413)
Q Consensus 117 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~ 196 (413)
. + ..|.. -... .|+.||++|++..+..+.+. +.|||||=+|+..
T Consensus 90 ~-------------g--~~~~~------------------~~~~--pDftnp~ar~wW~~~~~~l~-~~Gv~~~W~DmnE 133 (332)
T cd06601 90 Y-------------G--GGLGS------------------PGLY--PDLGRPDVREWWGNQYKYLF-DIGLEFVWQDMTT 133 (332)
T ss_pred c-------------C--ccCCC------------------Ccee--eCCCCHHHHHHHHHHHHHHH-hCCCceeecCCCC
Confidence 0 0 01100 0112 36789999999888888886 7899999999764
|
GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes. |
| >cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.6 Score=46.24 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc---------HHHHHHHHHhhC
Q 015125 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS---------AKYVKEYIEGAR 211 (413)
Q Consensus 166 ~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~---------~~~~~~~~~~~~ 211 (413)
.+++.|+.+++.+..+++++|.||+-+|-=.... ..|++++.++++
T Consensus 92 ~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~ 146 (358)
T cd02875 92 SNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFK 146 (358)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHh
Confidence 4788899999988888899999999999643221 246777777764
|
Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase. |
| >PRK11052 malQ 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.55 Score=50.40 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=33.5
Q ss_pred cHHHHHhhhhhHH--HcCCCEEE-cCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHH
Q 015125 41 WWRNLERKVPDIS--KSGFTSVW-LPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALL 96 (413)
Q Consensus 41 ~~~gi~~~L~yLk--~lGv~~I~-L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv 96 (413)
++..+++.+.... -.|++=|. +.|..+. ....|+|.+-+.++|-|=+.+++.++.
T Consensus 166 dl~~l~d~~a~~G~~~~qlnPlha~~p~~p~-~~SPYsp~Sr~alNPlyI~~e~l~e~~ 223 (695)
T PRK11052 166 DLKQMLEDVAKRGGDFIGLNPIHALYPANPE-SASPYSPSSRRWLNVIYIDVNAVEDFQ 223 (695)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcCCCCCCC-CCCCcccccccccChHHcCHHHHhhhh
Confidence 4555555555322 23355555 3343222 467799999999998888877766553
|
|
| >COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.67 Score=50.41 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCC-CCCcCCCCCHHH
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFH-GVPNIDHTQHFV 170 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~~~~v 170 (413)
.++|++++|++|||+|+=+-+. ...+++. |.--. ....++...+ +..+..+.|. ...-+|+.||++
T Consensus 323 pk~mi~~l~~~Gikl~~~i~P~-i~~d~~~----~~e~~------~~Gy~~k~~~--g~~~~~~~w~~~~a~~DFtnp~~ 389 (772)
T COG1501 323 PKQMIAELHEKGIKLIVIINPY-IKQDSPL----FKEAI------EKGYFVKDPD--GEIYQADFWPGNSAFPDFTNPDA 389 (772)
T ss_pred HHHHHHHHHhcCceEEEEeccc-cccCCch----HHHHH------HCCeEEECCC--CCEeeecccCCcccccCCCCHHH
Confidence 4499999999999999988665 2222221 10000 0001111111 1111122222 345578999999
Q ss_pred HHHHHH-HHHHHHhhcCCCeEeecccCCCc
Q 015125 171 RKDIIA-WLRWLRNTVGFQDFRFDFARGYS 199 (413)
Q Consensus 171 r~~l~~-~~~~w~~~~gvDGfR~D~a~~i~ 199 (413)
|+...+ ..+.++ ++|||||=.|+....+
T Consensus 390 r~Ww~~~~~~~l~-d~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 390 REWWASDKKKNLL-DLGVDGFWNDMNEPEP 418 (772)
T ss_pred HHHHHHHHHhHHH-hcCccEEEccCCCCcc
Confidence 999995 556676 9999999999865443
|
|
| >cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.7 Score=47.10 Aligned_cols=77 Identities=13% Similarity=0.071 Sum_probs=50.9
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcC-------CC--------CCCCCCCCCCcccCCCCCCCCC-------------CHHHH
Q 015125 41 WWRNLERKVPDISKSGFTSVWLP-------PA--------THSFAPEGYLPQNLYSLNSSYG-------------SEHLL 92 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~-------Pi--------~~~~~~~gY~~~d~~~id~~~G-------------t~~~~ 92 (413)
+.+.|.+.|+.++..++|.++|. || .+..++.++...+...+-|.+| |.+|+
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~di 99 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRADY 99 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHHHH
Confidence 37888888888898999988874 11 1111233333333222222222 78999
Q ss_pred HHHHHHHHHcCCEEEEEE-ccccCcC
Q 015125 93 KALLHKMKQHKVRAMADI-VINHRVG 117 (413)
Q Consensus 93 ~~Lv~~~h~~Gi~VilD~-V~NH~~~ 117 (413)
++||+-|+++||+||-.+ ++.|+..
T Consensus 100 ~eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 100 IEILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred HHHHHHHHHcCCEEEEccCCchhHHH
Confidence 999999999999999766 4667664
|
Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
| >PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.77 Score=35.79 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=31.9
Q ss_pred EEecCCEEEEEECC----EEEEEEcCCCC-C--------CCCCCcEEeeeCCceEE
Q 015125 368 LEAQSNLYSAIIGD----KVCMKIGDGSW-C--------PAGKEWTLATSGHKYAV 410 (413)
Q Consensus 368 ~~~~~~~~~~~r~~----~~lv~lnn~~~-~--------~~~~~~~~~~s~~~~~~ 410 (413)
-..+++++||.|.+ .++||+|++.. . |.++.|+++|++....+
T Consensus 5 ~d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~~ 60 (95)
T PF02806_consen 5 DDNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEEY 60 (95)
T ss_dssp EEESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCEEE
T ss_pred ccCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCCcceeeEEeCCCccEE
Confidence 34567899999932 58999998664 1 45789999998866554
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A .... |
| >PLN02763 hydrolase, hydrolyzing O-glycosyl compounds | Back alignment and domain information |
|---|
Probab=89.20 E-value=1.2 Score=49.44 Aligned_cols=133 Identities=13% Similarity=0.145 Sum_probs=74.3
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 41 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+-+.+.+-++.+++.|| ++|||--=+ -.||.. |..|+ +|- +.++|++++|++|+++|.=+-+ ++..
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwlDidY----m~g~~~---FTwD~~rFP---dP~~mv~~Lh~~G~kvv~iidP-gI~~ 267 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWMDIDY----MDGFRC---FTFDKERFP---DPKGLADDLHSIGFKAIWMLDP-GIKA 267 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEehhh----hcCCCc---eeECcccCC---CHHHHHHHHHHCCCEEEEEEcC-CCcc
Confidence 45677777777777665 566664211 123332 45553 554 4689999999999999764432 1211
Q ss_pred CCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCC-CCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHG-VPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 118 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
+..|..+... -....+....++ .+..+..|.+ ..=.|+.||++|++..+.++.++ +.|||||=+|+-
T Consensus 268 -----d~gY~~y~eg---~~~~~fvk~~~G--~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~-d~GVDG~W~Dmn 335 (978)
T PLN02763 268 -----EEGYFVYDSG---CENDVWIQTADG--KPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFV-SNGVDGIWNDMN 335 (978)
T ss_pred -----CCCCHHHHhH---hhcCeeEECCCC--CeeEeeecCCCccccCCCCHHHHHHHHHHHHHHh-cCCCcEEEccCC
Confidence 1123222110 000000111111 1111111211 12257899999999999999888 799999999984
|
|
| >PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=89.00 E-value=0.68 Score=53.05 Aligned_cols=71 Identities=18% Similarity=0.092 Sum_probs=57.6
Q ss_pred cCCceeEEEeeecCCCCC---ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-CC----CCCCcccCCCCCCCCCCHHHH
Q 015125 22 RNGREILFQGFNWESCKH---DWWRNLERKVPDISKSGFTSVWLPPATHSF-AP----EGYLPQNLYSLNSSYGSEHLL 92 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~~---g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-~~----~gY~~~d~~~id~~~Gt~~~~ 92 (413)
+...++++|+|-=.+..+ |||..+.+-++.+++.|.+.|+|+|+++.. .. ..|+|.+-+.++|-|=+.+.+
T Consensus 722 ~r~~Gv~~~l~sLrs~~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~~~~~p~~~SPYsp~S~~alNplyI~~~~l 800 (1221)
T PRK14510 722 GRACGILMHLYSLRSQRPWGIGDFEELYALVDFLAEGGQSLWGVNPLHPLGLGDPERASPYQPSSRRAGNPLLISLDLL 800 (1221)
T ss_pred CcceEEEEccccCCCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCccchhccccChhhcCHhhc
Confidence 345689999997554333 899999999999999999999999999854 33 789999999999777665443
|
|
| >cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD) | Back alignment and domain information |
|---|
Probab=88.80 E-value=2.1 Score=41.55 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCC
Q 015125 87 GSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHT 166 (413)
Q Consensus 87 Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 166 (413)
.+.+++++-|+.||++|+||++-+ +.. ... ....
T Consensus 57 ~~~~~~~~~i~~~q~~G~KVllSi-----GG~------------------~~~-----------------------~~~~ 90 (312)
T cd02871 57 YSPAEFKADIKALQAKGKKVLISI-----GGA------------------NGH-----------------------VDLN 90 (312)
T ss_pred CChHHHHHHHHHHHHCCCEEEEEE-----eCC------------------CCc-----------------------cccC
Confidence 356789999999999999999875 110 000 0123
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 167 QHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 167 ~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
++.-|+.+++.+..+++++|+||+=+|-=
T Consensus 91 ~~~~~~~fa~sl~~~~~~~g~DGiDiD~E 119 (312)
T cd02871 91 HTAQEDNFVDSIVAIIKEYGFDGLDIDLE 119 (312)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 56778889999988899999999999964
|
ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. |
| >cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin | Back alignment and domain information |
|---|
Probab=88.44 E-value=3.5 Score=40.75 Aligned_cols=126 Identities=7% Similarity=-0.053 Sum_probs=70.8
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCC-----------CCCC----CCCCCCCc----ccCCCCCC--CCCCHHHHHHHHHHHH
Q 015125 42 WRNLERKVPDISKSGFTSVWLPP-----------ATHS----FAPEGYLP----QNLYSLNS--SYGSEHLLKALLHKMK 100 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~P-----------i~~~----~~~~gY~~----~d~~~id~--~~Gt~~~~~~Lv~~~h 100 (413)
-+.|.+.++.++.+++|.++|.- -++. .+..+... .......+ .+=|.+|++++|+-|+
T Consensus 17 ~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~ 96 (357)
T cd06563 17 VDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYAA 96 (357)
T ss_pred HHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHHH
Confidence 67888889999999999999842 1110 11111111 00011111 1226899999999999
Q ss_pred HcCCEEEEEE-ccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHH
Q 015125 101 QHKVRAMADI-VINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLR 179 (413)
Q Consensus 101 ~~Gi~VilD~-V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~ 179 (413)
++||+||-.+ ++.|+..-... | +.....+ ... .+. .........||..+|++.+++.++++
T Consensus 97 ~rgI~VIPEID~PGH~~a~l~~----~-------pel~~~~----~~~--~~~-~~~~~~~~~L~~~~~~t~~f~~~ll~ 158 (357)
T cd06563 97 ERGITVIPEIDMPGHALAALAA----Y-------PELGCTG----GPG--SVV-SVQGVVSNVLCPGKPETYTFLEDVLD 158 (357)
T ss_pred HcCCEEEEecCCchhHHHHHHh----C-------ccccCCC----CCC--ccc-cccCcCCCccCCCChhHHHHHHHHHH
Confidence 9999999776 35565431100 0 0000000 000 000 00011123588899999999999999
Q ss_pred HHHhhc
Q 015125 180 WLRNTV 185 (413)
Q Consensus 180 ~w~~~~ 185 (413)
..++-|
T Consensus 159 E~~~lF 164 (357)
T cd06563 159 EVAELF 164 (357)
T ss_pred HHHHhC
Confidence 887544
|
Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
| >PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane | Back alignment and domain information |
|---|
Probab=88.10 E-value=0.69 Score=44.31 Aligned_cols=57 Identities=12% Similarity=0.217 Sum_probs=34.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
|-+.-..-+++||+||+|+|-+ |+|||..--.+-+ +.+.+.||.||+|+-.-+.+.+
T Consensus 51 d~~~C~rDi~~l~~LgiNtIRV-----------------Y~vdp~~nHd~CM----~~~~~aGIYvi~Dl~~p~~sI~ 107 (314)
T PF03198_consen 51 DPEACKRDIPLLKELGINTIRV-----------------YSVDPSKNHDECM----SAFADAGIYVILDLNTPNGSIN 107 (314)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-----------------S---TTS--HHHH----HHHHHTT-EEEEES-BTTBS--
T ss_pred CHHHHHHhHHHHHHcCCCEEEE-----------------EEeCCCCCHHHHH----HHHHhCCCEEEEecCCCCcccc
Confidence 4455566778999999999984 7888776444433 4567789999999976655543
|
It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A. |
| >PLN03236 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.92 E-value=1 Score=48.44 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 90 HLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 90 ~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
.+++++.+.|+++||+++-|+.+- ++.++
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg-Va~dS 302 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG-VDKAS 302 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece-eCCCc
Confidence 568889999999999999999887 55544
|
|
| >cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB) | Back alignment and domain information |
|---|
Probab=87.63 E-value=1.2 Score=43.80 Aligned_cols=154 Identities=9% Similarity=0.067 Sum_probs=87.0
Q ss_pred ccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHH
Q 015125 15 TDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHL 91 (413)
Q Consensus 15 ~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~ 91 (413)
|.+||.++=| |+..-..-.+-+.+.+.++.+++.|| ++|||-.=+- .+|. + ++.|+ +|- +
T Consensus 3 ~~lpP~walG-------~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~--~-f~~d~~~FP---d 65 (339)
T cd06603 3 PPLPPLFSLG-------YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKR--Y-FTWDKKKFP---D 65 (339)
T ss_pred CCCCchHHHH-------HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCC--c-eEeCcccCC---C
Confidence 3456666554 33332333478889999999988775 6676653211 1222 2 45554 554 5
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCC-CCCcCCCCCHHH
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFH-GVPNIDHTQHFV 170 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~~~~v 170 (413)
.++||+++|++|+||++-+.+-- ..+.. ...|..... ..+. +.. .++ .......|. ...-+|+.||++
T Consensus 66 p~~mi~~L~~~G~k~~~~~~P~v-~~~~~--~~~y~e~~~--~g~~---vk~-~~g--~~~~~~~w~g~~~~~Dftnp~a 134 (339)
T cd06603 66 PEKMQEKLASKGRKLVTIVDPHI-KRDDG--YYVYKEAKD--KGYL---VKN-SDG--GDFEGWCWPGSSSWPDFLNPEV 134 (339)
T ss_pred HHHHHHHHHHCCCEEEEEecCce-ecCCC--CHHHHHHHH--CCeE---EEC-CCC--CEEEEEECCCCcCCccCCChhH
Confidence 68899999999999999876542 22110 011110000 0000 000 000 000011111 123478999999
Q ss_pred HHHHHHHHHHHHh--hcCCCeEeecccC
Q 015125 171 RKDIIAWLRWLRN--TVGFQDFRFDFAR 196 (413)
Q Consensus 171 r~~l~~~~~~w~~--~~gvDGfR~D~a~ 196 (413)
++...+.++.... ..|+||+=+|+..
T Consensus 135 ~~ww~~~~~~~~~~~~~g~~g~w~D~~E 162 (339)
T cd06603 135 RDWWASLFSYDKYKGSTENLYIWNDMNE 162 (339)
T ss_pred HHHHHHHHHHHhhcccCCCceEEeccCC
Confidence 9999999998874 4689999888753
|
Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae. |
| >PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme | Back alignment and domain information |
|---|
Probab=87.48 E-value=0.94 Score=45.43 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=43.7
Q ss_pred CCCCCcCCC-----CCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC
Q 015125 157 FHGVPNIDH-----TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 157 ~~~~~dln~-----~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~ 211 (413)
|.+...|+| ++|.++++|.++.+... .-++|||+|-++..|..+-+.+++++|
T Consensus 360 WGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A--~iF~G~RiDNCHSTPlhVaeylLd~AR 417 (423)
T PF14701_consen 360 WGDCVKLRYGSKPEDSPFLWKHMKEYTELMA--KIFHGFRIDNCHSTPLHVAEYLLDAAR 417 (423)
T ss_pred cCceeeecCCCCCCCCHHHHHHHHHHHHHHH--HhcCeeeeecCCCCcHHHHHHHHHHHH
Confidence 345556666 47999999999999884 668999999999999998888887765
|
|
| >cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins | Back alignment and domain information |
|---|
Probab=87.29 E-value=3.9 Score=39.89 Aligned_cols=122 Identities=16% Similarity=0.108 Sum_probs=72.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcC-------CCCCCC--CCC-CCC------cccCCCC--CCCCCCHHHHHHHHHHHHHc
Q 015125 41 WWRNLERKVPDISKSGFTSVWLP-------PATHSF--APE-GYL------PQNLYSL--NSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~-------Pi~~~~--~~~-gY~------~~d~~~i--d~~~Gt~~~~~~Lv~~~h~~ 102 (413)
..+.|.+.|+.++.+++|.++|- ++-..+ ... .|. +...... ...+=|.+|++++|+-|.++
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~r 94 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDR 94 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHc
Confidence 37888899999999999999982 110000 000 000 0000111 12222799999999999999
Q ss_pred CCEEEEEE-ccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHH
Q 015125 103 KVRAMADI-VINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWL 181 (413)
Q Consensus 103 Gi~VilD~-V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w 181 (413)
||+||-.+ ++.|+..-.. . | +.....+ . ........||..+|++.+++.+++...
T Consensus 95 gI~vIPEID~PGH~~a~~~---~-~-------pel~~~~----~---------~~~~~~~~l~~~~~~t~~f~~~l~~E~ 150 (326)
T cd06564 95 GVNIIPEIDSPGHSLAFTK---A-M-------PELGLKN----P---------FSKYDKDTLDISNPEAVKFVKALFDEY 150 (326)
T ss_pred CCeEeccCCCcHHHHHHHH---h-h-------HHhcCCC----c---------ccCCCcccccCCCHHHHHHHHHHHHHH
Confidence 99999666 3556544110 0 0 0000000 0 001223357889999999999999999
Q ss_pred HhhcC
Q 015125 182 RNTVG 186 (413)
Q Consensus 182 ~~~~g 186 (413)
++-|.
T Consensus 151 ~~~f~ 155 (326)
T cd06564 151 LDGFN 155 (326)
T ss_pred HHhcC
Confidence 86665
|
Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
| >PLN02950 4-alpha-glucanotransferase | Back alignment and domain information |
|---|
Probab=86.94 E-value=1.5 Score=48.70 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 90 HLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 90 ~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
.+++++.+.|+++||+++.|+.+- ++.++
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig-V~~dS 489 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG-VDRNS 489 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece-eCCCc
Confidence 468899999999999999999886 44443
|
|
| >TIGR03356 BGL beta-galactosidase | Back alignment and domain information |
|---|
Probab=86.64 E-value=4.1 Score=41.40 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=45.0
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
+.+.-..+-++-||+||++++=++=-...--+.|- -.+ .-...+=+.++|++|+++||++|+++.
T Consensus 51 d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~-----~~~--n~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 51 DHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGT-----GPV--NPKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCC-----CCc--CHHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 36888889999999999999887532221111110 011 111246688999999999999999993
|
|
| >smart00812 Alpha_L_fucos Alpha-L-fucosidase | Back alignment and domain information |
|---|
Probab=86.48 E-value=8 Score=38.66 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=71.2
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCC
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGG 124 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~ 124 (413)
.+-++-+|+.|...|-|+-=+.-. .-+.=..++|..++... ..+-+++|+++|+++||++-+= |..
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~Y----~S~-------- 150 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGLY----HSL-------- 150 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEEE----cCH--------
Confidence 445667899999999877654321 11111123555555444 5688999999999999999881 221
Q ss_pred cccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHH---HHHHHHHHhhcCCCeEeecccCCCc
Q 015125 125 KYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDI---IAWLRWLRNTVGFQDFRFDFARGYS 199 (413)
Q Consensus 125 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l---~~~~~~w~~~~gvDGfR~D~a~~i~ 199 (413)
.+|+... +.... .........+...+++ ..-++.++..||-|.+=+|.+-.-+
T Consensus 151 ---------~DW~~p~---y~~~~----------~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~~ 206 (384)
T smart00812 151 ---------FDWFNPL---YAGPT----------SSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEAP 206 (384)
T ss_pred ---------HHhCCCc---ccccc----------ccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCc
Confidence 1222110 00000 0000011234556777 7888999999999999999874433
|
O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis. |
| >PRK15447 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=86.21 E-value=1.5 Score=42.35 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=41.4
Q ss_pred eecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 32 FNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 32 f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
|+|. =..++.-...|++.|+|+||+.-. . +..-..| +.+++++.|+.||++|.+|++
T Consensus 10 ~~~p------~~~~~~~~~~~~~~gaDaVY~g~~--~-----------~~~R~~f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 10 YYWP------KETVRDFYQRAADSPVDIVYLGET--V-----------CSKRREL-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred cCCC------CCCHHHHHHHHHcCCCCEEEECCc--c-----------CCCccCC-CHHHHHHHHHHHHHcCCEEEE
Confidence 6776 334555666788999999999731 1 1111123 679999999999999999998
|
|
| >PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=85.16 E-value=6 Score=38.96 Aligned_cols=146 Identities=14% Similarity=0.088 Sum_probs=74.1
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCC
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG 123 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~ 123 (413)
..+-+.-+|++|...|-|+--+... .-+-=..++|..++ .-+..+-+++|+++|+++||++.+ +-|..
T Consensus 93 ~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~-~~~krDiv~El~~A~rk~Glk~G~---Y~S~~------- 161 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVN-SGPKRDIVGELADACRKYGLKFGL---YYSPW------- 161 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGG-GGGTS-HHHHHHHHHHHTT-EEEE---EEESS-------
T ss_pred HHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccC-CCCCCCHHHHHHHHHHHcCCeEEE---Eecch-------
Confidence 3455667899999999987655431 11111223333333 223468899999999999999998 22211
Q ss_pred CcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCC-CHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc--H
Q 015125 124 GKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHT-QHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS--A 200 (413)
Q Consensus 124 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~-~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~--~ 200 (413)
+|+........ ... . ...++..-. ...+.+++..-++.++.+|.+|.+=+|....-+ .
T Consensus 162 -----------dw~~~~~~~~~--~~~-~-----~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~~~~~ 222 (346)
T PF01120_consen 162 -----------DWHHPDYPPDE--EGD-E-----NGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPDPDED 222 (346)
T ss_dssp -----------SCCCTTTTSSC--HCH-H-----CC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSCCCTH
T ss_pred -----------HhcCcccCCCc--cCC-c-----ccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCccccc
Confidence 12211000000 000 0 000000000 123455778889999999999999999886522 2
Q ss_pred HHHHH---HHHhhCCCeEEEccc
Q 015125 201 KYVKE---YIEGARPIFSVGEYW 220 (413)
Q Consensus 201 ~~~~~---~~~~~~~~~~vgE~~ 220 (413)
....+ ++.+..|..+|..-+
T Consensus 223 ~~~~~~~~~i~~~qp~~ii~~r~ 245 (346)
T PF01120_consen 223 WDSAELYNWIRKLQPDVIINNRW 245 (346)
T ss_dssp HHHHHHHHHHHHHSTTSEEECCC
T ss_pred cCHHHHHHHHHHhCCeEEEeccc
Confidence 22233 344445644444434
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B .... |
| >cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins | Back alignment and domain information |
|---|
Probab=83.84 E-value=3.5 Score=39.75 Aligned_cols=112 Identities=7% Similarity=-0.039 Sum_probs=69.7
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCC--CC--CCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE-ccccC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPP--AT--HSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI-VINHR 115 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~P--i~--~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~-V~NH~ 115 (413)
..+.|.+.++.|+.+|+|.++|-= -| ++...-++ +...=|.+|++++++-|.++||.||-.+ ++.|+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~--------~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~ 86 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGR--------MRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHL 86 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCccccc--------CCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHH
Confidence 467889999999999999999832 11 11111111 0122269999999999999999999554 25565
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcC
Q 015125 116 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG 186 (413)
Q Consensus 116 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~g 186 (413)
..--.+ ..|... +... ..-..||..+|++.+++.+.++..++-|.
T Consensus 87 ~~~l~~--~~~~~l------------~~~~------------~~~~~l~~~~~~t~~fi~~li~ev~~~f~ 131 (301)
T cd06565 87 EFILKH--PEFRHL------------REVD------------DPPQTLCPGEPKTYDFIEEMIRQVLELHP 131 (301)
T ss_pred HHHHhC--cccccc------------cccC------------CCCCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 441100 011000 0000 00124788899999999999998885544
|
GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
| >COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.81 E-value=16 Score=34.54 Aligned_cols=125 Identities=14% Similarity=0.151 Sum_probs=78.7
Q ss_pred ecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcc
Q 015125 33 NWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 33 ~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~ 112 (413)
+|. |+-+-.++..|.+-+++.|-+=|= +...+..=.++++++ .+.+.|.++|.=+-+
T Consensus 26 ~w~------~ql~d~~~~~i~~~~f~llVVDps-------------~~g~~~~~~~~eelr----~~~~gg~~pIAYlsI 82 (300)
T COG2342 26 PWY------YQLQDAYINEILNSPFDLLVVDPS-------------YCGPFNTPWTIEELR----TKADGGVKPIAYLSI 82 (300)
T ss_pred chh------hhcccchHHHHhcCCCcEEEEecc-------------ccCCCCCcCcHHHHH----HHhcCCeeEEEEEec
Confidence 677 887888888999999998887772 122233345678888 556677777766655
Q ss_pred ccCcCCCC-CCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEe
Q 015125 113 NHRVGTTQ-GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFR 191 (413)
Q Consensus 113 NH~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR 191 (413)
.....=.. |.++ |.. ..++|-.. ....|.+--...|..|+-++-+...++.++ +.|+||.-
T Consensus 83 g~ae~yR~Ywd~~---w~~-~~p~wLg~-------------edP~W~Gny~VkYW~~eWkdii~~~l~rL~-d~GfdGvy 144 (300)
T COG2342 83 GEAESYRFYWDKY---WLT-GRPDWLGE-------------EDPEWPGNYAVKYWEPEWKDIIRSYLDRLI-DQGFDGVY 144 (300)
T ss_pred hhhhhhhhHhhhh---hhc-CCcccccC-------------CCCCCCCCceeeccCHHHHHHHHHHHHHHH-HccCceEE
Confidence 53333110 0000 000 11222211 011234444577889999999999999998 99999999
Q ss_pred ecccCCC
Q 015125 192 FDFARGY 198 (413)
Q Consensus 192 ~D~a~~i 198 (413)
+|.+...
T Consensus 145 LD~VD~y 151 (300)
T COG2342 145 LDVVDAY 151 (300)
T ss_pred EeeechH
Confidence 9988655
|
|
| >TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type | Back alignment and domain information |
|---|
Probab=83.37 E-value=4.1 Score=39.49 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=32.5
Q ss_pred CCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCC
Q 015125 157 FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARG 197 (413)
Q Consensus 157 ~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~ 197 (413)
|.+-.-+|+.+|+.|+.+.+.++..+ +.|+|||=+|.+..
T Consensus 132 W~g~~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDs 171 (315)
T TIGR01370 132 WPGNYDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDA 171 (315)
T ss_pred CCCceeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchh
Confidence 33334588999999999999988776 99999999997654
|
Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases. |
| >PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=83.12 E-value=14 Score=35.09 Aligned_cols=105 Identities=12% Similarity=0.036 Sum_probs=62.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCC-CCC-CcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAP-EGY-LPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~-~gY-~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
+.+....-+|+-+++|+..|.+ ...-+ ++. ...|+....+ ..++++||+=|+++|++|+|=. ||....
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~~~~d~~~~~~----~~dl~elv~Ya~~KgVgi~lw~--~~~~~~ 99 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLV----DAGWYGWEKDDDFDFTKPIP----DFDLPELVDYAKEKGVGIWLWY--HSETGG 99 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEE----BTTCCGS--TTT--TT-B-T----T--HHHHHHHHHHTT-EEEEEE--ECCHTT
T ss_pred CHHHHHHHHHHHHHcCCCEEEe----ccccccccccccccccccCC----ccCHHHHHHHHHHcCCCEEEEE--eCCcch
Confidence 8999999999999999999998 11111 111 2344444443 3789999999999999998733 322110
Q ss_pred CCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCC
Q 015125 119 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 198 (413)
Q Consensus 119 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i 198 (413)
+ ...+.+.+.+.++.+ ++.||.|+-+|.+..=
T Consensus 100 ------------------~-----------------------------~~~~~~~~~~~f~~~-~~~Gv~GvKidF~~~d 131 (273)
T PF10566_consen 100 ------------------N-----------------------------VANLEKQLDEAFKLY-AKWGVKGVKIDFMDRD 131 (273)
T ss_dssp ------------------B-----------------------------HHHHHCCHHHHHHHH-HHCTEEEEEEE--SST
T ss_pred ------------------h-----------------------------hHhHHHHHHHHHHHH-HHcCCCEEeeCcCCCC
Confidence 0 011333454555555 5999999999999876
Q ss_pred cHHHH
Q 015125 199 SAKYV 203 (413)
Q Consensus 199 ~~~~~ 203 (413)
....+
T Consensus 132 ~Q~~v 136 (273)
T PF10566_consen 132 DQEMV 136 (273)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 65433
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A. |
| >cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination | Back alignment and domain information |
|---|
Probab=82.94 E-value=8.4 Score=37.15 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc------HHHHHHHHHhhC
Q 015125 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS------AKYVKEYIEGAR 211 (413)
Q Consensus 166 ~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~------~~~~~~~~~~~~ 211 (413)
.++..|+.+++.+..+++++|.||+-+|--..-+ ..|++++.++++
T Consensus 83 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~ 134 (313)
T cd02874 83 SNPEARQRLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLH 134 (313)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhh
Confidence 3688899999998888889999999999754322 236777777765
|
CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis. |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=82.68 E-value=2.2 Score=34.83 Aligned_cols=43 Identities=19% Similarity=0.394 Sum_probs=33.1
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
-+.+.+-++.+.++|+.++|+.|= +.-+++++.|+++||+|+-
T Consensus 65 ~~~~~~~v~~~~~~g~~~v~~~~g------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAVWLQPG------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-TT------------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcc------------------------hHHHHHHHHHHHcCCEEEe
Confidence 678899999999999999999982 4557788899999999973
|
|
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=82.54 E-value=10 Score=38.61 Aligned_cols=48 Identities=6% Similarity=-0.023 Sum_probs=32.2
Q ss_pred hhhHHHcCCCEEEcCCC-CCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 49 VPDISKSGFTSVWLPPA-THSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 49 L~yLk~lGv~~I~L~Pi-~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
|...-+.|.|+|++..- |..... .. .| +.+++++.|+.||++|++|.+
T Consensus 16 l~aAi~~GADaVY~G~~~~~~R~~----~~-------~f-~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 16 MRYAFAYGADAVYAGQPRYSLRVR----NN-------EF-NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred HHHHHHCCCCEEEECCCccchhhh----cc-------CC-CHHHHHHHHHHHHHcCCEEEE
Confidence 33344679999999542 211100 01 22 468899999999999999987
|
|
| >PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO | Back alignment and domain information |
|---|
Probab=82.31 E-value=2 Score=32.45 Aligned_cols=42 Identities=10% Similarity=0.032 Sum_probs=23.7
Q ss_pred EecCCEEEEEE--C-CEEEEEEcCCCCC------------CCCCCcEEeeeCCceEE
Q 015125 369 EAQSNLYSAII--G-DKVCMKIGDGSWC------------PAGKEWTLATSGHKYAV 410 (413)
Q Consensus 369 ~~~~~~~~~~r--~-~~~lv~lnn~~~~------------~~~~~~~~~~s~~~~~~ 410 (413)
-..+++++|.| + +.++|++|+++.. +.....++++||....+
T Consensus 6 ~P~~gvYvYfR~~~~~tVmVilN~n~~~~~ldl~ry~E~l~~~~~~~diltg~~i~l 62 (78)
T PF10438_consen 6 APQDGVYVYFRYYDGKTVMVILNKNDKEQTLDLKRYAEVLGGFTSAKDILTGKTIDL 62 (78)
T ss_dssp --BTTEEEEEEEESSEEEEEEEE-SSS-EEEEGGGGHHHHTT--EEEETTT--EEE-
T ss_pred CccCCEEEEEEEcCCCEEEEEEcCCCCCeEEcHHHHHHhhCCCcceEECCCCCEEec
Confidence 34678999998 4 4577777775532 23467788888877653
|
Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B. |
| >PRK10076 pyruvate formate lyase II activase; Provisional | Back alignment and domain information |
|---|
Probab=81.88 E-value=4 Score=37.27 Aligned_cols=62 Identities=8% Similarity=0.075 Sum_probs=43.2
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCC--C----CCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFA--P----EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~--~----~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
-+.+.+-.+.|+++|+..|.|+|.++... | ..|...+. .-=+.++++++.+.+.++|++|++
T Consensus 144 ~e~i~~ia~~l~~l~~~~~~llpyh~~g~~Ky~~lg~~y~~~~~-----~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 144 RENMQQALDVLIPLGIKQIHLLPFHQYGEPKYRLLGKTWSMKEV-----PAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCccchhHHHHcCCcCccCCC-----CCcCHHHHHHHHHHHHHcCCeEEe
Confidence 55666667788888999999999776431 1 12222221 112688999999999999999975
|
|
| >PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=81.56 E-value=1.2 Score=43.42 Aligned_cols=56 Identities=9% Similarity=0.080 Sum_probs=34.0
Q ss_pred HhhhhhHHHcCCCEEEcCCCCC-CCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 46 ERKVPDISKSGFTSVWLPPATH-SFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~-~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+.|..+|++|+|+|.+-=+.. +...- ...|| ....+|.++++.|+++||.|||-.
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~~--g~~df-------~g~~dl~~f~~~a~~~gl~vilrp 83 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPEE--GQFDF-------TGNRDLDRFLDLAQENGLYVILRP 83 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSBT--TB----------SGGG-HHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHhCCcceEEEeccccccCCCC--Ccccc-------cchhhHHHHHHHHHHcCcEEEecc
Confidence 3577788999999998742221 11111 11222 234789999999999999999875
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B .... |
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=81.44 E-value=4.2 Score=37.60 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=46.6
Q ss_pred ccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 015125 21 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (413)
Q Consensus 21 ~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h 100 (413)
+.+| +++.+.+... ..+.+-+.+.|+||+++|+++-= +..+ +.++..++|+.++
T Consensus 57 v~~G-Gtl~E~~~~q-------~~~~~Yl~~~k~lGf~~IEiS~G-------------~~~i-----~~~~~~rlI~~~~ 110 (237)
T TIGR03849 57 VYPG-GTLFEIAHSK-------GKFDEYLNECDELGFEAVEISDG-------------SMEI-----SLEERCNLIERAK 110 (237)
T ss_pred EeCC-ccHHHHHHHh-------hhHHHHHHHHHHcCCCEEEEcCC-------------ccCC-----CHHHHHHHHHHHH
Confidence 3445 5555555533 34555667999999999998751 2333 4889999999999
Q ss_pred HcCCEEEEEE
Q 015125 101 QHKVRAMADI 110 (413)
Q Consensus 101 ~~Gi~VilD~ 110 (413)
++|++|+-.+
T Consensus 111 ~~g~~v~~Ev 120 (237)
T TIGR03849 111 DNGFMVLSEV 120 (237)
T ss_pred hCCCeEeccc
Confidence 9999999665
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=81.29 E-value=1.5 Score=45.41 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcCCCeEeecccCCCc----------------------HHHHHHHHHhhC-CCeEEEcccCC
Q 015125 174 IIAWLRWLRNTVGFQDFRFDFARGYS----------------------AKYVKEYIEGAR-PIFSVGEYWDS 222 (413)
Q Consensus 174 l~~~~~~w~~~~gvDGfR~D~a~~i~----------------------~~~~~~~~~~~~-~~~~vgE~~~~ 222 (413)
.++-++.- ...+|++|+|.+..+- .++++.+..+.. +..+|||..+.
T Consensus 268 w~~rl~~~--~~~~d~lRIDH~~Gf~r~W~IP~~~~~a~~G~~~~~p~~~ll~~l~~e~~r~~~vigEDLG~ 337 (496)
T PF02446_consen 268 WIDRLRAN--MRLFDALRIDHFRGFFRYWWIPAGGETAIDGAWVRYPGEDLLAILALESGRDCLVIGEDLGT 337 (496)
T ss_dssp HHHHHHHH--HCC-SEEEEETGGGGTEEEEEETT-SSSTT-EEEE--HHHHHHHHHHHHS-S-EEEE--TSS
T ss_pred HHHHHHHH--HHhCCchHHHHHHHHHheeEecCCCCCCCCceeecchHHHHHHHHHHHcCCCCcEEEeecCC
Confidence 33344444 3567889999876541 456777777776 67789996643
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A. |
| >COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.30 E-value=4.9 Score=38.17 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=33.2
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHH---HHHHHHHHHcCCEEEEEE
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLL---KALLHKMKQHKVRAMADI 110 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~---~~Lv~~~h~~Gi~VilD~ 110 (413)
.+.+.-||.-|||.|=|==.... .| .+=++-.|...|+ .++.+.|++.||||++|+
T Consensus 66 qD~~~iLK~~GvNyvRlRvwndP--------~d-sngn~yggGnnD~~k~ieiakRAk~~GmKVl~dF 124 (403)
T COG3867 66 QDALQILKNHGVNYVRLRVWNDP--------YD-SNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDF 124 (403)
T ss_pred HHHHHHHHHcCcCeEEEEEecCC--------cc-CCCCccCCCcchHHHHHHHHHHHHhcCcEEEeec
Confidence 34677899999998755221111 11 0111223334444 456667778999999998
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=80.13 E-value=25 Score=33.19 Aligned_cols=106 Identities=9% Similarity=-0.007 Sum_probs=74.4
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR 105 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~ 105 (413)
..-+.+|.|. -...++.++..++.||+.|-+.= ..-..+..+++|+.++++|++
T Consensus 71 ~~~~~~~~~~------~~~~~~~l~~a~~~gv~~iri~~--------------------~~~~~~~~~~~i~~ak~~G~~ 124 (266)
T cd07944 71 NTKIAVMVDY------GNDDIDLLEPASGSVVDMIRVAF--------------------HKHEFDEALPLIKAIKEKGYE 124 (266)
T ss_pred CCEEEEEECC------CCCCHHHHHHHhcCCcCEEEEec--------------------ccccHHHHHHHHHHHHHCCCe
Confidence 3566777766 21234456666778888877631 111588999999999999999
Q ss_pred EEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhc
Q 015125 106 AMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTV 185 (413)
Q Consensus 106 VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~ 185 (413)
|.+-+.--... + .+++.+.++... +.
T Consensus 125 v~~~~~~a~~~--------------------------------------------------~---~~~~~~~~~~~~-~~ 150 (266)
T cd07944 125 VFFNLMAISGY--------------------------------------------------S---DEELLELLELVN-EI 150 (266)
T ss_pred EEEEEEeecCC--------------------------------------------------C---HHHHHHHHHHHH-hC
Confidence 88766432100 0 356788888876 88
Q ss_pred CCCeEee-cccCCCcHHHHHHHHHhhC
Q 015125 186 GFQDFRF-DFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 186 gvDGfR~-D~a~~i~~~~~~~~~~~~~ 211 (413)
|+|.+++ |++..+.|.-..+++..++
T Consensus 151 g~~~i~l~DT~G~~~P~~v~~lv~~l~ 177 (266)
T cd07944 151 KPDVFYIVDSFGSMYPEDIKRIISLLR 177 (266)
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 9999987 8888888888888877765
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 413 | ||||
| 1ava_A | 403 | Amy2BASI PROTEIN-Protein Complex From Barley Seed L | 1e-102 | ||
| 3bsg_A | 414 | Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant | 1e-102 | ||
| 1ht6_A | 405 | Crystal Structure At 1.5a Resolution Of The Barley | 1e-101 | ||
| 2qps_A | 405 | "sugar Tongs" Mutant Y380a In Complex With Acarbose | 1e-101 | ||
| 2qpu_A | 405 | Sugar Tongs Mutant S378p In Complex With Acarbose L | 1e-101 | ||
| 3bsh_A | 414 | Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant | 1e-100 | ||
| 1rp8_A | 405 | Crystal Structure Of Barley Alpha-Amylase Isozyme 1 | 1e-100 | ||
| 1gcy_A | 527 | High Resolution Crystal Structure Of Maltotetraose- | 2e-29 | ||
| 2amg_A | 418 | Structure Of Hydrolase (Glycosidase) Length = 418 | 3e-29 | ||
| 1jda_A | 429 | Maltotetraose-Forming Exo-Amylase Length = 429 | 7e-29 | ||
| 1qi3_A | 429 | Mutant (D193n) Maltotetraose-Forming Exo-Amylase In | 1e-28 | ||
| 1qi5_A | 429 | Mutant (D294n) Maltotetraose-Forming Exo-Amylase In | 1e-28 | ||
| 1qpk_A | 418 | Mutant (D193g) Maltotetraose-Forming Exo-Amylase In | 2e-28 | ||
| 1qi4_A | 429 | Mutant (e219g) Maltotetraose-forming Exo-amylase In | 2e-28 | ||
| 3qgv_A | 435 | Crystal Structure Of A Thermostable Amylase Variant | 7e-21 | ||
| 1mwo_A | 435 | Crystal Structure Analysis Of The Hyperthermostable | 2e-20 | ||
| 3bc9_A | 599 | Alpha-Amylase B In Complex With Acarbose Length = 5 | 2e-20 | ||
| 3bh4_A | 483 | High Resolution Crystal Structure Of Bacillus Amylo | 2e-13 | ||
| 1e3x_A | 483 | Native Structure Of Chimaeric Amylase From B. Amylo | 3e-13 | ||
| 1hvx_A | 515 | Bacillus Stearothermophilus Alpha-Amylase Length = | 3e-10 | ||
| 1vjs_A | 483 | Structure Of Alpha-Amylase Precursor Length = 483 | 3e-10 | ||
| 2guy_A | 478 | Orthorhombic Crystal Structure (Space Group P21212) | 5e-10 | ||
| 1bli_A | 483 | Bacillus Licheniformis Alpha-Amylase Length = 483 | 8e-10 | ||
| 1ob0_A | 483 | Kinetic Stabilization Of Bacillus Licheniformis-Amy | 1e-09 | ||
| 2gjp_A | 485 | Structure Of Bacillus Halmapalus Alpha-Amylase, Cry | 2e-09 | ||
| 1w9x_A | 481 | Bacillus Halmapalus Alpha Amylase Length = 481 | 2e-09 | ||
| 1ud2_A | 480 | Crystal Structure Of Calcium-Free Alpha-Amylase Fro | 2e-09 | ||
| 1ud3_A | 480 | Crystal Structure Of Amyk38 N289h Mutant Length = 4 | 3e-09 | ||
| 2taa_A | 478 | Structure And Possible Catalytic Residues Of Taka-A | 3e-09 | ||
| 2aaa_A | 484 | Calcium Binding In Alpha-Amylases: An X-Ray Diffrac | 3e-07 | ||
| 2die_A | 485 | Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1 | 3e-07 | ||
| 1wp6_A | 485 | Crystal Structure Of Maltohexaose-producing Amylase | 8e-06 | ||
| 1wza_A | 488 | Crystal Structure Of Alpha-Amylase From H.Orenii Le | 1e-05 | ||
| 1bpl_B | 294 | Glycosyltransferase Length = 294 | 2e-05 | ||
| 1bpl_A | 189 | Glycosyltransferase Length = 189 | 7e-05 | ||
| 1lwh_A | 441 | Crystal Structure Of T. Maritima 4-Alpha-Glucanotra | 3e-04 | ||
| 2ya1_A | 1014 | Product Complex Of A Multi-Modular Glycogen-Degradi | 6e-04 | ||
| 2ya0_A | 714 | Catalytic Module Of The Multi-Modular Glycogen-Degr | 6e-04 | ||
| 2ya2_A | 708 | Catalytic Module Of The Multi-Modular Glycogen-Degr | 7e-04 | ||
| 4aie_A | 549 | Structure Of Glucan-1,6-Alpha-Glucosidase From Lact | 8e-04 |
| >pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed Length = 403 | Back alignment and structure |
|
| >pdb|3BSG|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant Length = 414 | Back alignment and structure |
|
| >pdb|1HT6|A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha- Amylase Isozyme 1 Length = 405 | Back alignment and structure |
|
| >pdb|2QPS|A Chain A, "sugar Tongs" Mutant Y380a In Complex With Acarbose Length = 405 | Back alignment and structure |
|
| >pdb|2QPU|A Chain A, Sugar Tongs Mutant S378p In Complex With Acarbose Length = 405 | Back alignment and structure |
|
| >pdb|3BSH|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant Y105aY380A IN COMPLEX WITH INHIBITOR ACARBOSE Length = 414 | Back alignment and structure |
|
| >pdb|1RP8|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1) Inactive Mutant D180a In Complex With Maltoheptaose Length = 405 | Back alignment and structure |
|
| >pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming Exo-Amylase Length = 527 | Back alignment and structure |
|
| >pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase) Length = 418 | Back alignment and structure |
|
| >pdb|1JDA|A Chain A, Maltotetraose-Forming Exo-Amylase Length = 429 | Back alignment and structure |
|
| >pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In Complex With Maltotetraose Length = 429 | Back alignment and structure |
|
| >pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In Complex With Maltotetraose Length = 429 | Back alignment and structure |
|
| >pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In Complex With Maltotetraose Length = 418 | Back alignment and structure |
|
| >pdb|1QI4|A Chain A, Mutant (e219g) Maltotetraose-forming Exo-amylase In Complex With Maltotetraose Length = 429 | Back alignment and structure |
|
| >pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant Length = 435 | Back alignment and structure |
|
| >pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable Pyrocoocus Woesei Alpha-Amylase Length = 435 | Back alignment and structure |
|
| >pdb|3BC9|A Chain A, Alpha-Amylase B In Complex With Acarbose Length = 599 | Back alignment and structure |
|
| >pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus Amyloliquefaciens Alpha-Amylase Length = 483 | Back alignment and structure |
|
| >pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B. Amyloliquefaciens And B. Licheniformis At 1.92a Length = 483 | Back alignment and structure |
|
| >pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase Length = 515 | Back alignment and structure |
|
| >pdb|1VJS|A Chain A, Structure Of Alpha-Amylase Precursor Length = 483 | Back alignment and structure |
|
| >pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of Aspergillus Niger Alpha-Amylase At 1.6 A Resolution Length = 478 | Back alignment and structure |
|
| >pdb|1BLI|A Chain A, Bacillus Licheniformis Alpha-Amylase Length = 483 | Back alignment and structure |
|
| >pdb|1OB0|A Chain A, Kinetic Stabilization Of Bacillus Licheniformis-Amylase Through Introduction Of Hydrophobic Residues At The Surface Length = 483 | Back alignment and structure |
|
| >pdb|2GJP|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase, Crystallized With The Substrate Analogue Acarbose And Maltose Length = 485 | Back alignment and structure |
|
| >pdb|1W9X|A Chain A, Bacillus Halmapalus Alpha Amylase Length = 481 | Back alignment and structure |
|
| >pdb|1UD2|A Chain A, Crystal Structure Of Calcium-Free Alpha-Amylase From Bacillus Sp. Strain Ksm-K38 (Amyk38) Length = 480 | Back alignment and structure |
|
| >pdb|1UD3|A Chain A, Crystal Structure Of Amyk38 N289h Mutant Length = 480 | Back alignment and structure |
|
| >pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase A Length = 478 | Back alignment and structure |
|
| >pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction Study At 2.1 Angstroms Resolution Of Two Enzymes From Aspergillus Length = 484 | Back alignment and structure |
|
| >pdb|2DIE|A Chain A, Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1378 Length = 485 | Back alignment and structure |
|
| >pdb|1WP6|A Chain A, Crystal Structure Of Maltohexaose-producing Amylase From Alkalophilic Bacillus Sp.707. Length = 485 | Back alignment and structure |
|
| >pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii Length = 488 | Back alignment and structure |
|
| >pdb|1BPL|B Chain B, Glycosyltransferase Length = 294 | Back alignment and structure |
|
| >pdb|1BPL|A Chain A, Glycosyltransferase Length = 189 | Back alignment and structure |
|
| >pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-Glucanotransferase Length = 441 | Back alignment and structure |
|
| >pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading Pneumococcal Virulence Factor Spua Length = 1014 | Back alignment and structure |
|
| >pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading Pneumococcal Virulence Factor Spua Length = 714 | Back alignment and structure |
|
| >pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading Pneumococcal Virulence Factor Spua In Complex With An Inhibitor Length = 708 | Back alignment and structure |
|
| >pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From Lactobacillus Acidophilus Ncfm Length = 549 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 413 | |||
| 1ht6_A | 405 | AMY1, alpha-amylase isozyme 1; barley, beta-alpha- | 1e-143 | |
| 1gcy_A | 527 | Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b | 1e-105 | |
| 3bc9_A | 599 | AMYB, alpha amylase, catalytic region; acarbose, t | 4e-83 | |
| 1mxg_A | 435 | Alpha amylase; hyperthermostable, family 13 glycos | 3e-78 | |
| 1wpc_A | 485 | Glucan 1,4-alpha-maltohexaosidase; maltohexaose-pr | 2e-67 | |
| 1ud2_A | 480 | Amylase, alpha-amylase; calcium-free, alkaline, hy | 4e-66 | |
| 3bh4_A | 483 | Alpha-amylase; calcium, carbohydrate metabolism, g | 4e-62 | |
| 1hvx_A | 515 | Alpha-amylase; hydrolase, glycosyltransferase, the | 4e-48 | |
| 1hx0_A | 496 | Alpha amylase (PPA); inhibitor, carbohydrate, panc | 2e-35 | |
| 1g94_A | 448 | Alpha-amylase; beta-alpha-8-barrel, 3 domain struc | 6e-24 | |
| 1ua7_A | 422 | Alpha-amylase; beta-alpha-barrels, acarbose, greek | 2e-22 | |
| 1cyg_A | 680 | Cyclodextrin glucanotransferase; glycosyltransfera | 7e-20 | |
| 2aaa_A | 484 | Alpha-amylase; glycosidase; 2.10A {Aspergillus nig | 8e-20 | |
| 3edf_A | 601 | FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c | 2e-19 | |
| 1d3c_A | 686 | Cyclodextrin glycosyltransferase; alpha-amylase, p | 2e-19 | |
| 3bmv_A | 683 | Cyclomaltodextrin glucanotransferase; glycosidase, | 4e-19 | |
| 3aie_A | 844 | Glucosyltransferase-SI; beta-alpha-barrels; HET: M | 2e-17 | |
| 3aie_A | 844 | Glucosyltransferase-SI; beta-alpha-barrels; HET: M | 2e-17 | |
| 2guy_A | 478 | Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; | 2e-17 | |
| 1qho_A | 686 | Alpha-amylase; glycoside hydrolase, starch degrada | 8e-17 | |
| 1jae_A | 471 | Alpha-amylase; glycosidase, carbohydrate metabolis | 2e-16 | |
| 1j0h_A | 588 | Neopullulanase; beta-alpha-barrels, hydrolase; 1.9 | 1e-11 | |
| 1ea9_C | 583 | Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A | 1e-11 | |
| 2z1k_A | 475 | (NEO)pullulanase; hydrolase, structural genomics, | 2e-10 | |
| 2wc7_A | 488 | Alpha amylase, catalytic region; CD/PUL-hydrolyzin | 2e-10 | |
| 1wzl_A | 585 | Alpha-amylase II; pullulan, GH-13, alpha-amylase f | 2e-10 | |
| 3dhu_A | 449 | Alpha-amylase; structural genomics, hydrolase, gly | 6e-10 | |
| 1ji1_A | 637 | Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6 | 7e-09 | |
| 3ttq_A | 1108 | Dextransucrase; (beta/alpha)8 barrel, transferase; | 8e-09 | |
| 3ttq_A | 1108 | Dextransucrase; (beta/alpha)8 barrel, transferase; | 2e-06 | |
| 4aee_A | 696 | Alpha amylase, catalytic region; hydrolase, hypert | 1e-08 | |
| 3klk_A | 1039 | Glucansucrase; native form, open conformation, mul | 2e-08 | |
| 3klk_A | 1039 | Glucansucrase; native form, open conformation, mul | 4e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-07 | |
| 3ucq_A | 655 | Amylosucrase; thermostability, amylose synthesis, | 2e-04 | |
| 1g5a_A | 628 | Amylosucrase; glycosyltransferase, glycoside hydro | 2e-04 | |
| 3czg_A | 644 | Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; | 3e-04 | |
| 1r7a_A | 504 | Sucrose phosphorylase; beta-alpha-barrels, dimer, | 3e-04 |
| >1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* Length = 405 | Back alignment and structure |
|---|
Score = 413 bits (1063), Expect = e-143
Identities = 188/407 (46%), Positives = 258/407 (63%), Gaps = 23/407 (5%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES K W+ + KV DI+ +G T VWLPP +HS + EGY+P LY ++
Sbjct: 2 QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDID 61
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLS----WDE 138
+S YG+ LK+L+ + V+A+ADIVINHR + G Y ++G W
Sbjct: 62 ASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGP 121
Query: 139 HAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
H + T + G N TG +F P+IDH V++++ WL WL++ +GF +R DF
Sbjct: 122 HMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDF 181
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHG-LDYNQDSHRQRIINWIDGTGQLS- 252
ARGYS + K YI+G P +V E WD+ G +Y+QD+HRQ ++NW+D G +
Sbjct: 182 ARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAAS 241
Query: 253 --AAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPF 310
FDFTTKGIL AV+G+ WRL D QGK PGVMGWWP++AVTF+DNHDTGSTQA WPF
Sbjct: 242 AGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPF 301
Query: 311 PSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEA 370
PS+ +M+GYAYIL HPGIP +FYDHF++WG +QI L+ +R++ I + S++KIL
Sbjct: 302 PSDKVMQGYAYILTHPGIPCIFYDHFFNWG--FKDQIAALVAIRKRNGITATSALKILMH 359
Query: 371 QSNLYSAIIGDKVCMKIG----DGSWCPAGKEWTLATSGHKYAVWHK 413
+ + Y A I KV +KIG G+ PAG + + G+ YAVW K
Sbjct: 360 EGDAYVAEIDGKVVVKIGSRYDVGAVIPAG--FVTSAHGNDYAVWEK 404
|
| >1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* Length = 527 | Back alignment and structure |
|---|
Score = 320 bits (820), Expect = e-105
Identities = 106/431 (24%), Positives = 165/431 (38%), Gaps = 40/431 (9%)
Query: 10 ETNQQTDLGAVIRNGREILFQGFNWESCK---HDWWRNLERKVPDISKSGFTSVWLPPA- 65
+ ++ G EI+ QGF+W + +DW+ L ++ I+ GF+++W+P
Sbjct: 1 DQAGKSPNAVRYHGGDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPW 60
Query: 66 ---------THSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116
+ S EGY + ++ N YGS+ L+ + V+ + D+V NH
Sbjct: 61 RDFSSWSDGSKSGGGEGYFWHD-FNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMN 119
Query: 117 GTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIA 176
G W G +++ V
Sbjct: 120 RGYPDKEINLPAGQG---FWRNDCADPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRD 176
Query: 177 WLRWLRNTVGFQDFRFDFARGYSAKYVKEYI-EGARPIFSVGEYWDSCNYNSHGLDYNQD 235
LR+ G FRFDF RGY+ + V ++ + A F VGE W + + N
Sbjct: 177 EFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTA 236
Query: 236 SHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTF 295
S +Q I +W D FDF K +Q + + P W AVTF
Sbjct: 237 SWQQIIKDWSDRAK--CPVFDFALKERMQNGSIADWKHGLNGNPDP-----RWREVAVTF 289
Query: 296 LDNHDTGSTQ------AHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVK 349
+DNHDTG + HW I + YAYIL PG P V++DH YDWG + I +
Sbjct: 290 VDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGY--GDFIRQ 347
Query: 350 LMDVRRQQDIHSRSSIKILEAQSNLYSAIIGDKVCMKIGDGS-------WCPAGKEWTLA 402
L+ VRR + + S+I S L + + G + + + S +
Sbjct: 348 LIQVRRAAGVRADSAISFHSGYSGLVATVSGSQQTLVVALNSDLGNPGQVASGSFSEAVN 407
Query: 403 TSGHKYAVWHK 413
S + VW
Sbjct: 408 ASNGQVRVWRS 418
|
| >3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A Length = 599 | Back alignment and structure |
|---|
Score = 264 bits (677), Expect = 4e-83
Identities = 95/475 (20%), Positives = 177/475 (37%), Gaps = 107/475 (22%)
Query: 23 NGREILFQGFNWESCKHD----------WWRNLERKVPDISKSGFTSVWLPPATHSFAP- 71
+ Q F WE + W L + P+++++GFT+VWLPPA A
Sbjct: 120 EVNHTILQAFYWEMNTGEYATEHPEEANLWNLLAERAPELAEAGFTAVWLPPANKGMAGI 179
Query: 72 --EGYLPQNLY---------SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ 120
GY +L+ ++ + YG++ L+ + + + ++ D V+NHR+G
Sbjct: 180 HDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADY 239
Query: 121 ---------------------------GHGGKYNRYDGIP-----LSWDEHAVTSC---- 144
G G+Y+ + WD+++ S
Sbjct: 240 AETVLLDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLF 299
Query: 145 --TGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKY 202
+ +++ ++D+ V+ D+I W +W+ N + F FR D + ++
Sbjct: 300 DEKSWDWTYNWDEDYLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHIDYRF 359
Query: 203 VKEYIEGAR-----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQ-LSAAFD 256
+ +++ + +F VGE W + ++D G FD
Sbjct: 360 IDKWMSAVQNSSNRDVFFVGEAW--------------VEDVDDLKGFLDTVGNPDLRVFD 405
Query: 257 FTTKGILQEAVKGQ-FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFP-SNH 314
F + + + G LR+A + +RAVTF+DNHDT + + +
Sbjct: 406 FPLRSFFVDMLNGAYMADLRNAG---LVNSPGYENRAVTFVDNHDTDRDEGSYTVSIYSR 462
Query: 315 IMEGYAYILMH-PGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSN 373
+ YAYIL G+P+V++ +Y W + KL+ RR ++ ++
Sbjct: 463 KYQAYAYILTRAEGVPTVYWKDYYIWEM--KEGLDKLLTARRYYAYGPGY--EVDNNDAD 518
Query: 374 LYSAI-------IGDKVCMKIGDGSWCP----------AGKEWTLATSGHKYAVW 411
+YS + GD + + I DG+ E+ T K V
Sbjct: 519 IYSYVRSGFPDVAGDGLVLMISDGTSGNVAGKWINSRQPDTEFYDLTGHIKEHVT 573
|
| >1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A* Length = 435 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 3e-78
Identities = 85/410 (20%), Positives = 163/410 (39%), Gaps = 54/410 (13%)
Query: 27 ILFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSFAP---EGYLPQNLY-- 80
++ Q F W+ WW ++ K+P+ ++G +++WLPP + + GY P + +
Sbjct: 11 VIMQAFYWDVPGGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDL 70
Query: 81 -------SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGH-----GGKYNR 128
++ + +GS+ L L+ + ++ +AD+VINHR G +
Sbjct: 71 GEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTD 130
Query: 129 YDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIA---WLRWLRNTV 185
+ + + F G P+I H + + + + ++
Sbjct: 131 FSKVASGKYTANYLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSI 190
Query: 186 GFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWI 245
GF +RFD+ +GY A V++++ ++VGEYWD+ + +++W
Sbjct: 191 GFDGWRFDYVKGYGAWVVRDWLNWWGG-WAVGEYWDT--------------NVDALLSWA 235
Query: 246 DGTGQLSAAFDFTTKGILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGST 304
+G + FDF + EA L A V+ P +AVTF+ NHDT
Sbjct: 236 YESG--AKVFDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDII 293
Query: 305 QAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSS 364
+P YA+IL + G P +FY F +W + ++++ L+ + + S
Sbjct: 294 WNKYP--------AYAFILTYEGQPVIFYRDFEEWLN--KDKLINLIWIHDH---LAGGS 340
Query: 365 IKILEAQSNLYSAI-IGDKVCMKIGDG-SWCPAGKEWTLATSGHKYAVWH 412
I+ ++ + GD + + P + A H
Sbjct: 341 TTIVYYDNDELIFVRNGDSRRPGLITYINLSPNWVGRWVYVPKFAGACIH 390
|
| >1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* Length = 485 | Back alignment and structure |
|---|
Score = 220 bits (563), Expect = 2e-67
Identities = 95/476 (19%), Positives = 162/476 (34%), Gaps = 103/476 (21%)
Query: 23 NGREILFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSFAPE--GYLPQNL 79
+ Q F W + W L ++ G T+VW+PPA + GY +L
Sbjct: 4 GTNGTMMQYFEWYLPNDGNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDL 63
Query: 80 Y---------SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ---------- 120
Y ++ + YG+ L+A + +K + ++ D+V+NH+ G
Sbjct: 64 YDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVN 123
Query: 121 -----------------------GHGGKYNRYDGI-----PLSWDEHAVTSCT------- 145
G G ++ + + WD+ +
Sbjct: 124 PNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGH 183
Query: 146 -----GGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA 200
+ + ++ +ID V ++ W W NT+G FR D +
Sbjct: 184 GKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKY 243
Query: 201 KYVKEYIEGAR-----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAF 255
+ +++I R +F+V E+W + I N++ T + F
Sbjct: 244 SFTRDWINHVRSATGKNMFAVAEFW--------------KNDLGAIENYLQKTNWNHSVF 289
Query: 256 DFTTKGILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNH 314
D L A K G + +R+ V+ PS AVTF+DNHD+ +A F
Sbjct: 290 DVPLHYNLYNASKSGGNYDMRNIFNG--TVVQRHPSHAVTFVDNHDSQPEEALESFVEEW 347
Query: 315 IME-GYAYILMH-PGIPSVFYDHFYDWG----DSIHNQIVKLMDVRR------QQDIHSR 362
YA L G PSVFY +Y ++ ++I +++ R+ Q D
Sbjct: 348 FKPLAYALTLTREQGYPSVFYGDYYGIPTHGVPAMRSKIDPILEARQKYAYGKQNDYLDH 407
Query: 363 SSIKILEAQSNLYSAIIGDKVCMKIGDGSW-------CPAGKEWTLATSGHKYAVW 411
+I + N G M G G AG+ W+ T V
Sbjct: 408 HNIIGWTREGNTAHPNSGLATIMSDGAGGSKWMFVGRNKAGQVWSDITGNRTGTVT 463
|
| >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A Length = 480 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 4e-66
Identities = 93/472 (19%), Positives = 161/472 (34%), Gaps = 100/472 (21%)
Query: 23 NGREILFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPAT--HSFAPEGYLPQNL 79
+ Q + W W L +S +G T++W+PPA +S A GY +L
Sbjct: 2 GLNGTMMQYYEWHLENDGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDL 61
Query: 80 YSLN---------SSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG------G 124
Y L + YG++ L+ + +K + + D+V+NH++G
Sbjct: 62 YDLGEFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVN 121
Query: 125 KYNRYDGIPLSWDEHAVTSCTGGLGNGSTGD----------------------------- 155
NR+ I ++ A T N + D
Sbjct: 122 PTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTN 181
Query: 156 ------------NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYV 203
++ NID + V+ ++ W W + + +R D + Y
Sbjct: 182 WNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWYT 241
Query: 204 KEYIEGAR-----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFT 258
+++ R +F VGEYW + ++D + FD
Sbjct: 242 SDWVRHQRNEADQDLFVVGEYW--------------KDDVGALEFYLDEMNWEMSLFDVP 287
Query: 259 TKGILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIME 317
A + G + +R+ ++ P AVTF+DNHDT ++ + ++
Sbjct: 288 LNYNFYRASQQGGSYDMRNI--LRGSLVEAHPMHAVTFVDNHDTQPGESLESWVADWFKP 345
Query: 318 -GYAYILMH-PGIPSVFYDHFY----DWGDSIHNQIVKLMDVRR------QQDIHSRSSI 365
YA IL G P+VFY +Y D + + I +L+D R+ Q D +
Sbjct: 346 LAYATILTREGGYPNVFYGDYYGIPNDNISAKKDMIDELLDARQNYAYGTQHDYFDHWDV 405
Query: 366 KILEAQSNLYSAIIGDKVCMKIGDGSW-------CPAGKEWTLATSGHKYAV 410
+ + G M G G AG+ WT T + +V
Sbjct: 406 VGWTREGSSSRPNSGLATIMSNGPGGSKWMYVGRQNAGQTWTDLTGNNGASV 457
|
| >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A Length = 483 | Back alignment and structure |
|---|
Score = 206 bits (527), Expect = 4e-62
Identities = 95/473 (20%), Positives = 164/473 (34%), Gaps = 105/473 (22%)
Query: 27 ILFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSFAP--EGYLPQNLY--- 80
L Q F W + W+ L+ +S G T+VW+PPA + GY P +LY
Sbjct: 4 TLMQYFEWYTPNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLG 63
Query: 81 ------SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG----------------- 117
++ + YG++ L+ + + V+ D+V+NH+ G
Sbjct: 64 EFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANR 123
Query: 118 ----------------TTQGHGGKYNRYDGI-----PLSWDEHA-VTSCTGGLGNGSTGD 155
G G Y+ + WDE ++ G G D
Sbjct: 124 NQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKAWD 183
Query: 156 ----------NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKE 205
++ ++D+ V + W W N + FR D A+ ++++
Sbjct: 184 WEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSFLRD 243
Query: 206 YI-----EGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTK 260
++ + +F+V EYW ++ ++ N+++ T + FD
Sbjct: 244 WVQAVRQATGKEMFTVAEYW--------------QNNAGKLENYLNKTSFNQSVFDVPLH 289
Query: 261 GILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHW-PFPSNHIMEG 318
LQ A G + +R V+ P +AVTF++NHDT Q+ +
Sbjct: 290 FNLQAASSQGGGYDMRRLLDG--TVVSRHPEKAVTFVENHDTQPGQSLESTVQTWFKPLA 347
Query: 319 YAYIL-MHPGIPSVFYDHFYDWGD-------SIHNQIVKLMDVRR------QQDIHSRSS 364
YA+IL G P VFY Y S+ + I ++ R+ Q D
Sbjct: 348 YAFILTRESGYPQVFYGDMYGTKGTSPKEIPSLKDNIEPILKARKEYAYGPQHDYIDHPD 407
Query: 365 IKILEAQSNLYSAIIGDKVCMKIGDGSW-------CPAGKEWTLATSGHKYAV 410
+ + + +A G + G G AG+ W T V
Sbjct: 408 VIGWTREGDSSAAKSGLAALITDGPGGSKRMYAGLKNAGETWYDITGNRSDTV 460
|
| >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 Length = 515 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 4e-48
Identities = 84/403 (20%), Positives = 140/403 (34%), Gaps = 89/403 (22%)
Query: 26 EILFQGFNWES-CKHDWWRNLERKVPDISKSGFTSVWLPPAT--HSFAPEGYLPQNLY-- 80
+ Q F W W + + ++S G T++WLPPA S + GY +LY
Sbjct: 6 GTMMQYFEWYLPDDGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDL 65
Query: 81 -------SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ------------- 120
++ + YG++ + ++ AD+V +H+ G
Sbjct: 66 GEFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSD 125
Query: 121 --------------------GHGGKYNRYDGIPLSWD------EHAVTSCTGGLGNGSTG 154
G G Y+ + +D ++ G G
Sbjct: 126 RNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIGKAW 185
Query: 155 DN----------FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVK 204
D + ++D V ++ +W +W NT FR D + +
Sbjct: 186 DWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIKFSFFP 245
Query: 205 EYI-----EGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTT 259
+++ + +P+F+VGEYW ++ N+I T + FD
Sbjct: 246 DWLSYVRSQTGKPLFTVGEYW--------------SYDINKLHNYIMKTNGTMSLFDAPL 291
Query: 260 KGILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHW-PFPSNHIME 317
A K G + +R +M P+ AVTF+DNHDT QA
Sbjct: 292 HNKFYTASKSGGTFDMRTLMTN--TLMKDQPTLAVTFVDNHDTEPGQALQSWVDPWFKPL 349
Query: 318 GYAYIL-MHPGIPSVFYDHFYDWGD----SIHNQIVKLMDVRR 355
YA+IL G P VFY +Y S+ ++I L+ RR
Sbjct: 350 AYAFILTRQEGYPCVFYGDYYGIPQYNIPSLKSKIDPLLIARR 392
|
| >1hx0_A Alpha amylase (PPA); inhibitor, carbohydrate, pancreas, hydrolase; HET: GLC AC1 BGC MAL; 1.38A {Sus scrofa} SCOP: b.71.1.1 c.1.8.1 PDB: 1wo2_A* 1ua3_A* 1kxq_A 1kxt_A 1kxv_A 1jfh_A* 1vah_A* 1ppi_A* 3l2m_A* 3l2l_A* 1dhk_A* 1ose_A* 1pig_A* 1pif_A* 1bvn_P 3oli_A* 3old_A* 3olg_A* 3ole_A* 3ij8_A* ... Length = 496 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 2e-35
Identities = 60/353 (16%), Positives = 106/353 (30%), Gaps = 44/353 (12%)
Query: 21 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAP--------E 72
++GR + F W W + GF V + P + E
Sbjct: 6 TQSGRTSIVHLFEWR-----WVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWE 60
Query: 73 GYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYN----- 127
Y P + Y L + G+E+ + ++ + VR D VINH G+ G
Sbjct: 61 RYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYC 119
Query: 128 -----RYDGIPLS-WDEHAVTSCTGGLGNGSTGD-------NFHGVPNIDHTQHFVRKDI 174
+ +P S WD + T G S D G+ ++ + +VR I
Sbjct: 120 NPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMI 179
Query: 175 IAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQ 234
+L L + +G FR D ++ +K ++ + ++ W
Sbjct: 180 ADYLNKLID-IGVAGFRIDASKHMWPGDIKAVLDK---LHNLNTNWFPAGSRPFIFQEVI 235
Query: 235 DSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVT 294
D + I + F + K ++ + G RA+
Sbjct: 236 DLGGEAIKSSEYFGNGRVTEFKYGAKLGTVVRKWSG-EKMSYLKNWGEGWGFMPSDRALV 294
Query: 295 FLDNHDTGSTQAHWPFPSNHIMEGYAYILMH-------PGIPSVFYDHFYDWG 340
F+DNHD + Y + G V + +
Sbjct: 295 FVDNHDNQRGHGAGGSSILTFWDARLYKIAVGFMLAHPYGFTRVMSSYRWARN 347
|
| >1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A* Length = 448 | Back alignment and structure |
|---|
Score = 102 bits (254), Expect = 6e-24
Identities = 51/340 (15%), Positives = 101/340 (29%), Gaps = 53/340 (15%)
Query: 25 REILFQGFNWESCKHDWWRNLERKVPD-ISKSGFTSVWLPPATHSF---APEGYLPQNLY 80
F W W+++ ++ + G+ +V + P Y
Sbjct: 2 PTTFVHLFEWN------WQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSY 55
Query: 81 SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG-IPLSWDEH 139
L S G+ ++++ V D +INH + + + P+ +
Sbjct: 56 ELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQD 115
Query: 140 AVTSCTGGLGNGS------TGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFD 193
SCT + G+ ++D ++V+ I A++ L+ +G + FRFD
Sbjct: 116 FHESCTINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYINDLQA-IGVKGFRFD 174
Query: 194 FARGYSAKYVKEYI-EGARPIFSVGEYWDS-----CNYNSHGLDYNQDSHRQRIINWIDG 247
++ +A ++ + + E D + +
Sbjct: 175 ASKHVAASDIQSLMAKVNGSPVVFQEVIDQGGEAVGASEYLSTGLVTEFKYSTELGNTFR 234
Query: 248 TGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAH 307
G L+ +F G+ W S AV F+DNHD
Sbjct: 235 NGSLAWLSNF-----------GEGWGFMP------------SSSAVVFVDNHDNQRGHGG 271
Query: 308 WPFPSNHIME-----GYAYILMHP-GIPSVFYDHFYDWGD 341
++L +P G P V + +
Sbjct: 272 AGNVITFEDGRLYDLANVFMLAYPYGYPKVMSSYDFHGDT 311
|
| >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A Length = 422 | Back alignment and structure |
|---|
Score = 97.6 bits (243), Expect = 2e-22
Identities = 57/346 (16%), Positives = 105/346 (30%), Gaps = 49/346 (14%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAP-----------EGYLPQNLYSLNSSYGSEH 90
+ L+ + DI +G+T++ P Y P + N G+E
Sbjct: 16 FNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQ 75
Query: 91 LLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGN 150
K + +++ ++ + D VINH TT + N IP +W
Sbjct: 76 EFKEMCAAAEEYGIKVIVDAVINH---TTFDYAAISNEVKSIP-NWTHGNTQIKNWSDRW 131
Query: 151 GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEY---- 206
T ++ G+ + + V+ + +L N G FRFD A+ Y
Sbjct: 132 DVTQNSLLGLYDWNTQNTQVQSYLKRFLERALND-GADGFRFDAAKHIELPDDGSYGSQF 190
Query: 207 ---IEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGIL 263
I F GE ++D+ +
Sbjct: 191 WPNITNTSAEFQYGEILQD--------SASRDAAYA----------NYMDVTASNYGHSI 232
Query: 264 QEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDT--GSTQAHWPFPSNHIMEGYAY 321
+ A+K + + + + VT++++HDT + + I G+A
Sbjct: 233 RSALKNRNLGVSNIS---HYASDVSADKLVTWVESHDTYANDDEESTWMSDDDIRLGWAV 289
Query: 322 ILMHP-GIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIK 366
I P F + G + K R + +I
Sbjct: 290 IASRSGSTPLFFSR--PEGGGNGVRFPGKSQIGDRGSALFEDQAIT 333
|
| >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 Length = 680 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 7e-20
Identities = 55/377 (14%), Positives = 117/377 (31%), Gaps = 85/377 (22%)
Query: 56 GFTSVWLPPATHSFAPE-----------GYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV 104
G T++W+ + GY ++ N +G+ + L+ +
Sbjct: 67 GVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFFGTLSDFQRLVDAAHAKGI 126
Query: 105 RAMADIVINH------------RVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGS 152
+ + D NH G +G Y + H + L +G
Sbjct: 127 KVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDANMYFHHNGGTTFSSLEDG- 185
Query: 153 TGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYV--------K 204
N + +++H + + + ++ + G R D + K++
Sbjct: 186 IYRNLFDLADLNHQNPVIDRYLKDAVKMWIDM-GIDGIRMD-----AVKHMPFGWQKSLM 239
Query: 205 EYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQ 264
+ I+ RP+F+ GE++ S + D++ + + DF L+
Sbjct: 240 DEIDNYRPVFTFGEWFLS--------ENEVDANNH----YFAN-ESGMSLLDFRFGQKLR 286
Query: 265 EAVKGQFW-------RLRDAQGKPPGVMGWWPSRAVTFLDNHDTG--STQAHWPFPSNHI 315
+ ++ ++D VTF+DNHD P +
Sbjct: 287 QVLRNNSDNWYGFNQMIQDTASAYD-----EVLDQVTFIDNHDMDRFMIDGGDP---RKV 338
Query: 316 MEGYAYILMHPGIPSVFY----------DH-------FYDWGDSIHNQIVKLMDVRRQQD 358
A +L G+P+++Y D ++ + I KL +RR
Sbjct: 339 DMALAVLLTSRGVPNIYYGTEQYMTGNGDPNNRKMMSSFNKNTRAYQVIQKLSSLRRNNP 398
Query: 359 IHSRSSIKILEAQSNLY 375
+ + ++Y
Sbjct: 399 ALAYGDTEQRWINGDVY 415
|
| >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 Length = 484 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 8e-20
Identities = 66/360 (18%), Positives = 118/360 (32%), Gaps = 75/360 (20%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE--------GYLPQNLYSLNSSYGSEHLLK 93
W+ + + I GFT++W+ P T + GY Q +Y +NS++G+ LK
Sbjct: 42 WQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLK 101
Query: 94 ALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGG-----L 148
+L + + M D+V +H G+ Y+ +D S H T +
Sbjct: 102 SLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTMV 161
Query: 149 GNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYV-KEYI 207
+ GD +P++D T+ VR W+ L + R D S V ++
Sbjct: 162 EDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRID-----SVLEVQPDFF 216
Query: 208 EG---ARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQ 264
G A ++ VGE + N Q L ++ L
Sbjct: 217 PGYNKASGVYCVGEIDNG---NPASDCPYQK--------------VLDGVLNYPIYWQLL 259
Query: 265 EAVKGQ-------FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG--STQAHWPFPSNHI 315
A + + ++ P+ F++NHD + +
Sbjct: 260 YAFESSSGSISNLYNMIKSVASDCS-----DPTLLGNFIENHDNPRFAKYTS---DYSQA 311
Query: 316 MEGYAYILMHPGIPSVFY----------DHF---------YDWGDSIHNQIVKLMDVRRQ 356
+YI + GIP V+ + YD ++ I +R+
Sbjct: 312 KNVLSYIFLSDGIPIVYAGEEQHYAGGKVPYNREATWLSGYDTSAELYTWIATTNAIRKL 371
|
| >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A Length = 601 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 2e-19
Identities = 60/326 (18%), Positives = 100/326 (30%), Gaps = 55/326 (16%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE----GYLPQNLYSLNSSYGSEHLLKALLH 97
R + I+ GFT +W P + A GY + Y ++ YGS L
Sbjct: 147 IRGTIDHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLST 206
Query: 98 KMKQHKVRAMADIVINHRVGTTQGH--------GGKYNRYD-GIPLSWDEHAVTS---CT 145
+ ++ + + D+V++H + H N +P AV
Sbjct: 207 EARKRGMGLIQDVVLSH---IGKHHWWMKDLPTPDWINYGGKFVPTQHHRVAVQDPYAAQ 263
Query: 146 GGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKE 205
N + G G+P+++ T V +I W G R D ++ E
Sbjct: 264 ADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLTE 323
Query: 206 Y---IEGARP-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKG 261
Y + P + VG+ W + Q N+ T L + DF
Sbjct: 324 YTRRLMAEYPRLNMVGQEWS---TRVPVVARWQRGKA----NFDGYTSHLPSLMDFP--- 373
Query: 262 ILQEAVKGQFWRLRDAQGKPPGVMGW-------WPSRAVTFLDNHDT-------GSTQAH 307
L +A++ + + G P V F NHD G
Sbjct: 374 -LVDAMRNALSKTGEENGLNEVYETLSLDYLYPEPQNLVLFGGNHDMARMFSAAGEDFDR 432
Query: 308 WPFPSNHIMEGYAYILMHPGIPSVFY 333
W +++ P IP +
Sbjct: 433 WRM-------NLVFLMTMPRIPQFYS 451
|
| >1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... Length = 686 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 2e-19
Identities = 47/378 (12%), Positives = 112/378 (29%), Gaps = 86/378 (22%)
Query: 56 GFTSVWL-------PPATHSFAPE-----GYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103
G T++W+ + GY ++ N +YG+ + L+
Sbjct: 70 GVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKN 129
Query: 104 VRAMADIVINH------------RVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNG 151
++ + D NH G +G Y + H
Sbjct: 130 IKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHN-GGTDFSTTEN 188
Query: 152 STGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYV-------- 203
N + + +++H V + ++ + G R + + K++
Sbjct: 189 GIYKNLYDLADLNHNNSTVDVYLKDAIKMWLDL-GIDGIRMN-----AVKHMPFGWQKSF 242
Query: 204 KEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGIL 263
+ +P+F+ G+++ N + ++ + + DF +
Sbjct: 243 MAAVNNYKPVFTFGQWFL--GVNEVSPENHKFA-----------NESGMSLLDFRFAQKV 289
Query: 264 QEAVKGQ---FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDT------GSTQAHWPFPSNH 314
++ + + L+ VTF+DNHD + +
Sbjct: 290 RQVFRDNTDNMYGLKAMLEGSAADYA-QVDDQVTFIDNHDMERFHASNANRRKL------ 342
Query: 315 IMEGYAYILMHPGIPSVFY----------DHF-------YDWGDSIHNQIVKLMDVRRQQ 357
+ A+ L G+P+++Y D + + + I KL +R+
Sbjct: 343 -EQALAFTLTSRGVPAIYYGTEQYMSGGTDPDNRARIPSFSTSTTAYQVIQKLAPLRKCN 401
Query: 358 DIHSRSSIKILEAQSNLY 375
+ S + +++
Sbjct: 402 PAIAYGSTQERWINNDVL 419
|
| >3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A Length = 683 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 4e-19
Identities = 55/376 (14%), Positives = 121/376 (32%), Gaps = 82/376 (21%)
Query: 56 GFTSVWLPP---ATHSFAPE----------GYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102
G T++W+P ++ P+ GY ++ N +GS + L++ H
Sbjct: 70 GVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAH 129
Query: 103 KVRAMADIVINH------RVGTTQGHGGKYNRYDGI-----PLSWDEHAVTSCTGGLGNG 151
++ + D NH T +G Y+ + + H
Sbjct: 130 NIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFHHYGGTDFSSYED 189
Query: 152 STGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYV-------- 203
N + +++ + + + ++ + G R D + K++
Sbjct: 190 GIYRNLFDLADLNQQNSTIDSYLKSAIKVWLDM-GIDGIRLD-----AVKHMPFGWQKNF 243
Query: 204 KEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGIL 263
+ I RP+F+ GE++ N Y + + DF +
Sbjct: 244 MDSILSYRPVFTFGEWFLGTNEIDVNNTYFAN-------------ESGMSLLDFRFSQKV 290
Query: 264 QEAVKGQ---FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIME--- 317
++ + + L + + VTF+DNHD F +
Sbjct: 291 RQVFRDNTDTMYGLDSMIQSTASDYN-FINDMVTFIDNHDMDR------FYNGGSTRPVE 343
Query: 318 -GYAYILMHPGIPSVFY----------DHF-------YDWGDSIHNQIVKLMDVRRQQDI 359
A+ L G+P+++Y D + ++ + +N I KL +R+
Sbjct: 344 QALAFTLTSRGVPAIYYGTEQYMTGNGDPYNRAMMTSFNTSTTAYNVIKKLAPLRKSNPA 403
Query: 360 HSRSSIKILEAQSNLY 375
+ + + +++Y
Sbjct: 404 IAYGTTQQRWINNDVY 419
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* Length = 844 | Back alignment and structure |
|---|
Score = 83.7 bits (206), Expect = 2e-17
Identities = 41/309 (13%), Positives = 77/309 (24%), Gaps = 82/309 (26%)
Query: 117 GTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIA 176
T Y + P + T G G F ++D++ V+ + +
Sbjct: 151 KLTSQANSNYRILNRTPTNQTGKKDPRYTADRTIG--GYEFLLANDVDNSNPVVQAEQLN 208
Query: 177 WLRWLRN---------TVGFQDFRFDFARGYSAKYVKEYIE-------------GARPIF 214
WL +L N F R D A ++ + A
Sbjct: 209 WLHFLMNFGNIYANDPDANFDSIRVDAVDNVDADLLQIAGDYLKAAKGIHKNDKAANDHL 268
Query: 215 SVGEYWDSCNYNSHGLDYNQDSHRQR--IINWIDGTGQLSAAFDFTTKGILQEAVKGQFW 272
S+ E W + + Y D + N + + S A + + +
Sbjct: 269 SILEAW-----SYNDTPYLHDDGDNMINMDNRLRLSLLYSLAKPLNQRSGMNPLITNSLV 323
Query: 273 RLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQA------HWPFPS-------------- 312
D + V + +F+ HD+ P+
Sbjct: 324 NRTDDNAETAAVPSY------SFIRAHDSEVQDLIRDIIKAEINPNVVGYSFTMEEIKKA 377
Query: 313 -----------------NHIMEGYAYILMH-PGIPSVFYDHFYDWGDSIHN-------QI 347
+ YA +L + +P V+Y + I
Sbjct: 378 FEIYNKDLLATEKKYTHYNTALSYALLLTNKSSVPRVYYGDMFTDDGQYMAHKTINYEAI 437
Query: 348 VKLMDVRRQ 356
L+ R +
Sbjct: 438 ETLLKARIK 446
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* Length = 844 | Back alignment and structure |
|---|
Score = 83.3 bits (205), Expect = 2e-17
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 18/124 (14%)
Query: 26 EILFQGFNW-----ESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAP--------- 71
++F+GF+ + + + V ++ G T + P S
Sbjct: 611 RVMFEGFSNFQAFATKKEEYTNVVIAKNVDKFAEWGVTDFEMAPQYVSSTDGSFLDSVIQ 670
Query: 72 EGYLPQNLY----SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYN 127
GY + Y S + YG+ L + + ++ MAD V + +
Sbjct: 671 NGYAFTDRYDLGISKPNKYGTADDLVKAIKALHSKGIKVMADWVPDQMYALPEKEVVTAT 730
Query: 128 RYDG 131
R D
Sbjct: 731 RVDK 734
|
| >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A Length = 478 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 68/328 (20%), Positives = 118/328 (35%), Gaps = 76/328 (23%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE--------GYLPQNLYSLNSSYGSEHLLK 93
W+ + K+ I GFT++W+ P T GY Q++YSLN +YG+ LK
Sbjct: 42 WQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLK 101
Query: 94 ALLHKMKQHKVRAMADIVINH------------RVGTTQGHGGKYNRYDGIPLSWDEHAV 141
AL + + + M D+V NH V ++ + I D+ V
Sbjct: 102 ALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQV 161
Query: 142 TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAK 201
C GDN +P++D T+ V+ + W+ L + R D + K
Sbjct: 162 EDCW-------LGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRID-----TVK 209
Query: 202 YV-KEYIEG---ARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDF 257
+V K++ G A ++ +GE D + Q+ + ++
Sbjct: 210 HVQKDFWPGYNKAAGVYCIGEVLD---GDPAYTCPYQN--------------VMDGVLNY 252
Query: 258 TTKGILQEAVKGQ-------FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPF 310
L A K + + + P + TF++NHD F
Sbjct: 253 PIYYPLLNAFKSTSGSMDDLYNMINTVKSDCP-----DSTLLGTFVENHDNPR------F 301
Query: 311 PS-----NHIMEGYAYILMHPGIPSVFY 333
S A+I+++ GIP ++
Sbjct: 302 ASYTNDIALAKNVAAFIILNDGIPIIYA 329
|
| >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* Length = 686 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 8e-17
Identities = 58/399 (14%), Positives = 120/399 (30%), Gaps = 94/399 (23%)
Query: 42 WRNLERKVPDISKSGFTSVWLPP---ATHSFAPE------GYLPQNLYSLNSSYGSEHLL 92
+ +K+P + + G T++WL P + A GY ++ + +G+
Sbjct: 51 LEGVRQKLPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTF 110
Query: 93 KALLHKMKQHKVRAMADIVINH------------RVGTTQGHGGKYNRY-DGIPLSW--- 136
L++ Q+ ++ + D V NH G +G Y D +
Sbjct: 111 DTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDATKGYFHH 170
Query: 137 --DEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
D T + ++ + + + L G R D
Sbjct: 171 NGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVAH-GADGLRID- 228
Query: 195 ARGYSAKYV--------KEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWID 246
+ K+ + + + IF VGE++ D +H +++
Sbjct: 229 ----AVKHFNSGFSKSLADKLYQKKDIFLVGEWYGD--------DPGTANHLEKV--RYA 274
Query: 247 GTGQLSAAFDFTTKGILQEAVKGQ-------FWRLRDAQGKPPGVMGWWPSRAVTFLDNH 299
DF +++ + + + +TF+DNH
Sbjct: 275 N-NSGVNVLDFDLNTVIRNVFGTFTQTMYDLNNMVNQTGNEYK-----YKENLITFIDNH 328
Query: 300 DT------GSTQAHWPFPSNHIMEGYAYILMHPGIPSVFY----------DHF------- 336
D S +A+ + A+IL G PS++Y D +
Sbjct: 329 DMSRFLSVNSNKANL-------HQALAFILTSRGTPSIYYGTEQYMAGGNDPYNRGMMPA 381
Query: 337 YDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLY 375
+D + ++ L +RR + +++Y
Sbjct: 382 FDTTTTAFKEVSTLAGLRRNNAAIQYGTTTQRWINNDVY 420
|
| >1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A* Length = 471 | Back alignment and structure |
|---|
Score = 79.8 bits (196), Expect = 2e-16
Identities = 62/351 (17%), Positives = 103/351 (29%), Gaps = 56/351 (15%)
Query: 22 RNGREILFQGFNWESCKHDWWRNLERKVPD-ISKSGFTSVWLPPATHSFAPE-----GYL 75
+GR + F W+ W ++ + + GF V + P +
Sbjct: 7 ASGRNSIVHLFEWK------WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERY 60
Query: 76 PQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRV-GTTQGHGGKYNRYD---- 130
Y +N+ G E + + VR D VINH G G +D
Sbjct: 61 QPVSYIINTRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNY 120
Query: 131 -GIPLSWDEHAVTSCTGGLGNGSTGDN--FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGF 187
+P + + N G+ +++ +VR +I ++ + + G
Sbjct: 121 PAVPYGSGDFHSPCEVNNYQDADNVRNCELVGLRDLNQGSDYVRGVLIDYMNHMIDL-GV 179
Query: 188 QDFRFDFARGYSAKYVKEY------------IEGARPIFSVGEYWDSCNYNSHGLDYNQD 235
FR D A+ S + F E D +Y
Sbjct: 180 AGFRVDAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLGGEAISKNEYTGF 239
Query: 236 SHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTF 295
+F L A +G L++ P AV F
Sbjct: 240 GC----------------VLEFQFGVSLGNAFQGGNQ-LKNLANWGPEWGLLEGLDAVVF 282
Query: 296 LDNHDT----GSTQAHWPFPSNHIMEGYAYILMHP-GIPSVFYDHFYDWGD 341
+DNHD GS + P + M A++L HP G + + D
Sbjct: 283 VDNHDNQRTGGSQILTYKNPKPYKM-AIAFMLAHPYGTTRIMSSFDFTDND 332
|
| >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* Length = 588 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 62/372 (16%), Positives = 117/372 (31%), Gaps = 86/372 (23%)
Query: 48 KVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107
+ + G T ++L P S + Y + + ++ +G + LK L+ + + +R M
Sbjct: 181 HLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVM 240
Query: 108 ADIVINHRVGTT------QGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGV- 160
D V NH G G+ ++Y D + D F V
Sbjct: 241 LDAVFNH-CGYEFAPFQDVWKNGESSKY------KDWFHIHEFPLQTEPRPNYDTFAFVP 293
Query: 161 --PNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKE---YIEGARP-IF 214
P ++ V++ ++ + +R D A ++ +E ++ +P ++
Sbjct: 294 QMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALKPDVY 353
Query: 215 SVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFT-TKGILQEAVKGQFW- 272
+GE W D W+ G Q A ++ T G+L+ K +
Sbjct: 354 ILGEIWH---------DAMP---------WLRG-DQFDAVMNYPFTDGVLRFFAKEEISA 394
Query: 273 -----RLRDAQGKPPGVMGWWPSRAV--TFLDNHDT-------GSTQAHWPFPSNHIMEG 318
++ P L +HDT G
Sbjct: 395 RQFANQMMHVLHSYP-----NNVNEAAFNLLGSHDTSRILTVCGGDIRKVK-------LL 442
Query: 319 YAYILMHPGIPSVFY----------DHF----YDWGDSIHNQ-----IVKLMDVRRQQDI 359
+ + L G P ++Y D W N+ + +L+ +R+Q
Sbjct: 443 FLFQLTFTGSPCIYYGDEIGMTGGNDPECRKCMVWDPMQQNKELHQHVKQLIALRKQYRS 502
Query: 360 HSRSSIKILEAQ 371
R I L A
Sbjct: 503 LRRGEISFLHAD 514
|
| >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Length = 583 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 63/371 (16%), Positives = 124/371 (33%), Gaps = 79/371 (21%)
Query: 48 KVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107
+ +SK G +V+ P + Y ++ + ++ +G + LK L+ + +R +
Sbjct: 177 HLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVL 236
Query: 108 ADIVINHRVGTT---------QGHGGKY---NRYDGIPLSWDEHAVTSCTGGLGNGSTGD 155
D V NH G T G KY +PL + G+ T
Sbjct: 237 LDAVFNH-SGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVD--------GIPTYDTFA 287
Query: 156 NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKE---YIEGARP 212
+P ++ V++ ++ + G +R D A S ++ +E ++ A P
Sbjct: 288 FEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFRRVVKQANP 347
Query: 213 -IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ- 270
+ +GE W + + W++G Q A ++ + + Q
Sbjct: 348 DAYILGEVWH---------ESSI---------WLEG-DQFDAVMNYPFTNAVLDFFIHQI 388
Query: 271 ------FWRLRDAQGK-PPGVMGWWPSRAVTFLDNHDTG--STQAHWPFPSNHIMEGYAY 321
+ L P LD+HDT TQA + +
Sbjct: 389 ADAEKFSFMLGKQLAGYPRQA----SEVMFNLLDSHDTARLLTQAD--GDKRKMKLAVLF 442
Query: 322 ILMHPGIPSVFY----------DHF----YDWGDSIHNQ-----IVKLMDVRRQQDIHSR 362
+ G P ++Y D +W ++ H++ ++ +R+
Sbjct: 443 QFTYFGTPCIYYGDEVGLDGGHDPGCRKCMEWDETKHDKDLFAFYQTVIRLRQAHAALRT 502
Query: 363 SSIKILEAQSN 373
+ K L A+ N
Sbjct: 503 GTFKFLTAEKN 513
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} Length = 475 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 65/373 (17%), Positives = 124/373 (33%), Gaps = 55/373 (14%)
Query: 45 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV 104
+ K+P + G +++L P S A Y + + ++ G L+ LL H V
Sbjct: 52 VAEKLPYLLDLGVEAIYLNPVFASTANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHGV 111
Query: 105 RAMADIVINH---------RVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGD 155
R + D V NH + + Y + + T N
Sbjct: 112 RVILDGVFNHTGRGFFAFQHLMENGEQSPYRDWY-----HVKGFPLKAYTAH-PNYEAWW 165
Query: 156 NFHGVPNIDHTQHFVRKDIIAWLR-WLRNTVGFQDFRFDFARGYS----AKYVKEYIEGA 210
+P + VR+ ++A W+R G +R D + ++ ++GA
Sbjct: 166 GNPELPKLKVETPAVREYLLAVAEHWIR--FGVDGWRLDVPNEIPDPTFWREFRQRVKGA 223
Query: 211 RP-IFSVGEYWDSCNY--NSHGLDYNQDSH-RQRIINWIDGTGQLSAAFDFTTKGILQEA 266
P + VGE W+ ++ D + + ++ ++ G T G ++
Sbjct: 224 NPEAYIVGEIWEEADFWLQGDMFDAVMNYPLARAVLGFVGGEALDRDLAAQTGLGRIEPL 283
Query: 267 VKGQFW-RLRDAQGK-PPGVMGWWPSRAVTFLDNHDTG--STQAHWPFPSNHIMEGYAYI 322
F RL D G+ P V + L +HDT + A +
Sbjct: 284 QALAFSHRLEDLFGRYRPEV----VRAQMNLLTSHDTPRLLSLMRGSV--ERARLALALL 337
Query: 323 LMHPGIPSVFY----------DHF----YDWGDSIHNQ-----IVKLMDVRRQQDIHSRS 363
+ PG P+V+Y D W ++ + + +L +R++ +
Sbjct: 338 FLLPGNPTVYYGEEVGMAGGKDPENRGGMVWEEARWQKDLRETVKRLARLRKEHPALRTA 397
Query: 364 SIKILEAQSNLYS 376
+ AQ +
Sbjct: 398 PYLRIYAQDGHLA 410
|
| >2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A Length = 488 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 61/371 (16%), Positives = 111/371 (29%), Gaps = 56/371 (15%)
Query: 48 KVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107
+ I G +++ P S + Y + Y ++ G K LL Q ++ +
Sbjct: 61 DLDYIQNLGINAIYFTPIFQSASNHRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNIKVV 120
Query: 108 ADIVINHRVGTT------QGHGGKYNRYDGIPLSW----DEHAVTSCTGGLGNGSTGDNF 157
D V NH G ++ + ++W N
Sbjct: 121 LDGVFNH-SSRGFFFFHDVLENGPHSPW----VNWFKIEGWPLSPYNGEFPANYVGWAGN 175
Query: 158 HGVPNIDHTQHFVRKDIIAWLR-WLRNTVGFQDFRFDFARGYSA----KYVKEYIEGARP 212
+P +H VR+ I+ WL+ G +R D + ++ + P
Sbjct: 176 RALPEFNHDNPEVREYIMEIAEYWLK--FGIDGWRLDVPFEIKTPGFWQEFRDRTKAINP 233
Query: 213 -IFSVGEYWDSCNY--NSHGLDYNQDSH-RQRIINWIDGTGQLSAAFDFTTKGILQEAVK 268
+ VGE W + D + I + G +
Sbjct: 234 EAYIVGEVWGDSRQWLDGTQFDGVMNYLFAGPTIAFAAGDRVVLEQVQSRDYQPYPPLFA 293
Query: 269 GQFW-RLRDAQGKPPGVMGWWPSRAV--TFLDNHDTG--STQAHWPFPSNHIMEGYAYIL 323
++ ++++ P W + L +HDT T A + +L
Sbjct: 294 AEYATKIQEVLQLYP-----WEIQLTQLNLLASHDTARLMTIAGGDI--ASVELSTLLLL 346
Query: 324 MHPGIPSVFY----------DHFY--------DWGDSIHNQIVKLMDVRRQQDIHSRSSI 365
PG PS++Y D +W I N +L+ +R+
Sbjct: 347 TFPGAPSIYYGDEVGLPGGIDPDSRRGFPLEANWNQEIFNTHRQLITIRQTYPALRTGDY 406
Query: 366 KILEAQSNLYS 376
++L AQ LY
Sbjct: 407 QVLYAQGQLYL 417
|
| >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A Length = 585 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 55/367 (14%), Positives = 121/367 (32%), Gaps = 78/367 (21%)
Query: 48 KVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107
++P + + G T+++ P S + Y + +++ +G + L+ + + ++ +
Sbjct: 178 RLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKII 237
Query: 108 ADIVINHRVGTT---------QGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFH 158
D V NH G +G +Y + ++ V+ T +
Sbjct: 238 LDAVFNH-AGDQFFAFRDVLQKGEQSRYKDW----FFIEDFPVSK-TSRTNYETFAVQVP 291
Query: 159 GVPNIDHTQHFVRKDIIAWLR-WLRNTVGFQD-FRFDFARGYSAKYVKE---YIEGARP- 212
+P + V++ + R W+ + D +R D A + +E ++ P
Sbjct: 292 AMPKLRTENPEVKEYLFDVARFWMEQGI---DGWRLDVANEVDHAFWREFRRLVKSLNPD 348
Query: 213 IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFT-TKGILQEAVKGQF 271
VGE W D + W+ G Q + ++ + +++ G+
Sbjct: 349 ALIVGEIWH---------DAS---------GWLMG-DQFDSVMNYLFRESVIRFFATGEI 389
Query: 272 W------RLRDAQGK-PPGVMGWWPSRAVTFLDNHDTG--STQAHWPFPSNHIMEGYAYI 322
L A+ P LD+HDT T +
Sbjct: 390 HAERFDAELTRARMLYPEQA----AQGLWNLLDSHDTERFLTSCG--GNEAKFRLAVLFQ 443
Query: 323 LMHPGIPSVFY----------DHF----YDWGDSIHNQ-----IVKLMDVRRQQDIHSRS 363
+ + G P ++Y D W + N+ +L+ +R + +R
Sbjct: 444 MTYLGTPLIYYGDEIGMAGATDPDCLRPMIWEEKEQNRGLFEFYKELIRLRHRLASLTRG 503
Query: 364 SIKILEA 370
+++ A
Sbjct: 504 NVRSWHA 510
|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} Length = 449 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 6e-10
Identities = 54/316 (17%), Positives = 98/316 (31%), Gaps = 64/316 (20%)
Query: 45 LERKVPDISKSGFTSVWLPP-----ATHSFAPE--GYLPQNLYSLNSSYGSEHLLKALLH 97
+ + I G +WL P + Y ++ +N YG+ KAL
Sbjct: 32 VTADLQRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTD 91
Query: 98 KMKQHKVRAMADIVINHRVGTTQGH-------GGKYNRYDGIPLSWDEHAVTSCTGGLGN 150
+ + ++ M DIV NH T+ Y+ DG
Sbjct: 92 RAHELGMKVMLDIVYNH---TSPDSVLATEHPEWFYHDADGQL----------------- 131
Query: 151 GSTGDNFHGVPNIDHTQHFVRKDIIAWLR-WLRNTVGFQDFRFDFARGYSAKYVKEYIEG 209
+ ++ V ++D+ H + + I L W + G+ R D A + E +
Sbjct: 132 TNKVGDWSDVKDLDYGHHELWQYQIDTLLYWSQFVDGY---RCDVAPLVPLDFWLEARKQ 188
Query: 210 ARPI----FSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQE 265
+ E S + ++ Q D +L AFD T +
Sbjct: 189 VNAKYPETLWLAESAGS--------GFIEELRSQGYTGLSDS--ELYQAFDMTYDYDVFG 238
Query: 266 AVKGQFWRLRDAQGKPPGVMGWW------PSRAVTFLDNHDTGS--TQAHWPFPSNHIME 317
K + + + ++ + FL+NHD + H +
Sbjct: 239 DFKDYWQGRSTVE-RYVDLLQRQDATFPGNYVKMRFLENHDNARMMSLMH---SKAEAVN 294
Query: 318 GYAYILMHPGIPSVFY 333
+I M GIP ++
Sbjct: 295 NLTWIFMQRGIPLIYN 310
|
| >1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A Length = 637 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 7e-09
Identities = 56/381 (14%), Positives = 118/381 (30%), Gaps = 84/381 (22%)
Query: 56 GFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH----KVRAMADIV 111
G ++L P + Y Q+ +++ ++G L+ L++ + K + D V
Sbjct: 205 GANILYLNPIFKAPTNHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILDGV 264
Query: 112 INHRVGTTQGHGGKYNRYDGIPLSWDEHAVT----SCTGGLGNGSTGDNFHGVPNIDH-- 165
NH G + KYN + + + + + ++ F+ +P +++
Sbjct: 265 FNH-TGDSHPWFDKYNNFSSQGAYESQSSPWYNYYTFYTWPDSYASFLGFNSLPKLNYGN 323
Query: 166 ----TQHFVRKDIIAWLR-WLRNTVGFQDFRFD-----------FARGYSAKYVKE---Y 206
+ + + + + +L +R D + + + E
Sbjct: 324 SGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRLDAAQYVDANGNNGSDVTNHQIWSEFRNA 383
Query: 207 IEGARP-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTT-KGILQ 264
++G +GEYW + N W Q AA +F +
Sbjct: 384 VKGVNSNAAIIGEYWGNAN------------------PWTAQGNQWDAATNFDGFTQPVS 425
Query: 265 EAVKGQFWRLRDAQGKPPGVMGWW-----------PSRAVTFLDNHDTG--STQAHWPFP 311
E + G+ ++ A W + FL NHD +T++
Sbjct: 426 EWITGKDYQNNSASISTTQFDSWLRGTRANYPTNVQQSMMNFLSNHDITRFATRSG--GD 483
Query: 312 SNHIMEGYAYILMHPGIPSVFY----------DHF----YDWGDSIHNQ-----IVKLMD 352
+ + + G P+++Y D +DW + + KL+
Sbjct: 484 LWKTYLALIFQMTYVGTPTIYYGDEYGMQGGADPDNRRSFDWSQATPSNSAVALTQKLIT 543
Query: 353 VRRQQDIHSRSSIKILEAQSN 373
+R Q S L
Sbjct: 544 IRNQYPALRTGSFMTLITDDT 564
|
| >3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* Length = 1108 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 8e-09
Identities = 35/229 (15%), Positives = 64/229 (27%), Gaps = 62/229 (27%)
Query: 26 EILFQGFNW---ESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAP--------- 71
++++GF+ ++ HD + + + G TS + P S
Sbjct: 831 NLIYEGFSNFQPKATTHDELTNVVIAKNADVFNNWGITSFEMAPQYRSSGDHTFLDSTID 890
Query: 72 EGYLPQNLYSLNSS----YGSEHLLKALLHKMKQHKVRAMADIVINHRVG---------- 117
GY + Y L + YG++ L+A + + ++ MAD+V N
Sbjct: 891 NGYAFTDRYDLGFNTPTKYGTDGDLRATIQALHHANMQVMADVVDNQVYNLPGKEVVSAT 950
Query: 118 -------------------TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFH 158
T GG+Y + E A+ + L G D ++
Sbjct: 951 RAGVYGNDDATGFGTQLYVTNSVGGGQYQEKYAG--QYLE-ALKAKYPDLFEGKAYDYWY 1007
Query: 159 GVP------------NIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195
+ D I W N +
Sbjct: 1008 KNYANDGSNPYYTLSHGDRESIPADVAIKQWSAKYMNGTNVLGNGMGYV 1056
|
| >3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* Length = 1108 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 2e-06
Identities = 35/302 (11%), Positives = 73/302 (24%), Gaps = 76/302 (25%)
Query: 117 GTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIA 176
QG KY P + ++ +F ++D++ V+ + +
Sbjct: 377 AWFQGGYLKYGNNPLTPTTNSDYR---------QPGNAFDFLLANDVDNSNPVVQAENLN 427
Query: 177 WLRWLRN---------TVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCN--- 224
WL +L N F R D ++ + R + V + N
Sbjct: 428 WLHYLMNFGTITAGQDDANFDSIRIDAVDFIHNDTIQRTYDYLRDAYQVQQSEAKANQHI 487
Query: 225 -------YNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDA 277
+N + + + +LQ+ G
Sbjct: 488 SLVEAGLDAGTSTIHNDALIESNLREAATLSLTNEPGKNKPLTNMLQDVDGGTLITDHTQ 547
Query: 278 QGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEG------------------- 318
+ + + HD G + ++
Sbjct: 548 NSTENQ-----ATPNYSIIHAHDKGVQEKVGAAITDATGADWTNFTDEQLKAGLELFYKD 602
Query: 319 ----------------YAYILMHP-GIPSVFYDHFYDWGD-------SIHNQIVKLMDVR 354
YA +L + +P ++Y Y ++ +V LM R
Sbjct: 603 QRATNKKYNSYNIPSIYALMLTNKDTVPRMYYGDMYQDDGQYMANKSIYYDALVSLMTAR 662
Query: 355 RQ 356
+
Sbjct: 663 KS 664
|
| >4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 54/381 (14%), Positives = 108/381 (28%), Gaps = 88/381 (23%)
Query: 56 GFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115
G +++L P S + Y + S++ G+ + L+ + K++ + DI ++H
Sbjct: 278 GVETIYLTPIFSSTSYHRYDTIDYKSIDKYLGTMEDFEKLVQVLHSRKIKIVLDITMHH- 336
Query: 116 VGTT---------QGHGGKY-----------------NRYDGIPLSWDEHAVTSCTGGLG 149
+G Y +
Sbjct: 337 TNPCNELFVKALREGENSPYWEMFSFLSPPPKEIVELMLKYIDGEECRSRELYKLDYFRN 396
Query: 150 NGSTGDNFHGV---PNIDHTQHFVRKDIIAWLR-WLRNTVGFQD-FRFDFARGYSAKYVK 204
N + F + +H I + W+ + D FR D A G ++K
Sbjct: 397 NKPFYEAFFNIWLMAKFNHDNPRTVDYFIDITKFWIDKGI---DGFRIDVAMGIHYSWMK 453
Query: 205 E---YIEGARP-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTK 260
+ YI+ P +GE ++ ++D +A ++ +
Sbjct: 454 QYYEYIKNTYPDFLVLGELAENPR------------------IYMD---YFDSAMNYYLR 492
Query: 261 GILQEAVKGQFWRLRDAQGKPPGVMGWWPSRA----VTFLDNHDTG--STQAHWPFPSNH 314
+ E + + L + + V + P L +HD + +
Sbjct: 493 KAILELLIYKRIDLNEFISRINNVYAYIPHYKALSLYNMLGSHDVPRIKSMVQ---NNKL 549
Query: 315 IMEGYAYILMHPGIPSVFY----------DHF----YDWGDSIHNQ-----IVKLMDVRR 355
+ Y I PG P ++Y D W + I KL+ + +
Sbjct: 550 LKLMYVLIFALPGSPVIYYGDEIGLEGGRDPDNRRPMIWDRGNWDLELYEHIKKLIRIYK 609
Query: 356 QQDIHSRSSIKILEAQSNLYS 376
+ SNL
Sbjct: 610 SCRSMRHGYFLVENLGSNLLF 630
|
| >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* Length = 1039 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 2e-08
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 18/110 (16%)
Query: 26 EILFQGFNW-----ESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAP--------- 71
++++GF+ + + + G T+ L P +S
Sbjct: 664 NVIYEGFSNFIYWPTTESERTNVRIAQNADLFKSWGITTFELAPQYNSSKDGTFLDSIID 723
Query: 72 EGYLPQNLYSLNSS----YGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117
GY + Y L S YGS+ L+ L + + ++A+AD V +
Sbjct: 724 NGYAFTDRYDLGMSTPNKYGSDEDLRNALQALHKAGLQAIADWVPDQIYN 773
|
| >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* Length = 1039 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 4e-06
Identities = 31/268 (11%), Positives = 63/268 (23%), Gaps = 90/268 (33%)
Query: 162 NIDHTQHFVRKDIIAWLRWLRN---------TVGFQDFRFDFARGYSAKYVKEYIE---- 208
+ID++ V+ + + WL +L N F R D + +
Sbjct: 246 DIDNSNPVVQAEELNWLYYLMNFGTITGNNPEANFDGIRVDAVDNVDVDLLSIARDYFNA 305
Query: 209 ---------GARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTT 259
A ++ E W Y G D
Sbjct: 306 AYNMEQSDASANKHINILEDW-----GWDDPAYVNK------------IGNPQLTMDDRL 348
Query: 260 KGILQEAV---KGQFWRLRDAQ-----GKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFP 311
+ + + + + L + + F+ HD+ +
Sbjct: 349 RNAIMDTLSGAPDKNQALNKLITQSLVNRANDNTENAVIPSYNFVRAHDSNAQDQIRQAI 408
Query: 312 SNHIMEG-----------------------------------YAYILMHP-GIPSVFY-D 334
+ Y +L + +P V+Y D
Sbjct: 409 QAATGKPYGEFNLDDEKKGMEAYINDQNSTNKKWNLYNMPSAYTILLTNKDSVPRVYYGD 468
Query: 335 HFYDWGDSIHNQ------IVKLMDVRRQ 356
+ D G + ++ I L+ R +
Sbjct: 469 LYQDGGQYMEHKTRYFDTITNLLKTRVK 496
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 4e-07
Identities = 38/241 (15%), Positives = 61/241 (25%), Gaps = 88/241 (36%)
Query: 167 QHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYN 226
+ KDI+ F F + K V++ + I S E
Sbjct: 14 HQYQYKDIL------------SVFEDAFVDNFDCKDVQDMP---KSILSKEEI------- 51
Query: 227 SHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMG 286
H + + FW L Q
Sbjct: 52 DHIIMSKDAVSGTLRL----------------------------FWTLLSKQ-------- 75
Query: 287 WWPSRAV-TFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD--WGDSI 343
V F++ + ++ F +M P + + Y D + D
Sbjct: 76 ---EEMVQKFVE----EVLRINYKF----LMSPIKTEQRQPSMMTRMYIEQRDRLYND-- 122
Query: 344 HNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPAGKEWTLAT 403
NQ+ +V R Q +LE + I G + GS GK W +A
Sbjct: 123 -NQVFAKYNVSRLQPYLKLRQ-ALLELRPAKNVLIDG----VL---GS----GKTW-VAL 168
Query: 404 S 404
Sbjct: 169 D 169
|
| >3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A* Length = 655 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 43 RNLERKVPDISKSGFTSVWLPPATHSFAPE---GYLPQNLYSLNSSYGSEHLLKALLHKM 99
+ +E ++ + G + L P E GY Q+ ++ G+ L AL +
Sbjct: 111 KGVEERLDYLEGLGVKYLHLMPLLRPREGENDGGYAVQDYRAVRPDLGTMDDLSALARAL 170
Query: 100 KQHKVRAMADIVINH 114
+ + + D+V+NH
Sbjct: 171 RGRGISLVLDLVLNH 185
|
| >1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A* Length = 628 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 43 RNLERKVPDISKSGFTSVWLPP---ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKM 99
+ L+ K+P + G T + L P + GY + +N + G+ L+ ++ +
Sbjct: 113 KGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAAL 172
Query: 100 KQHKVRAMADIVINH 114
+ + A+ D + NH
Sbjct: 173 HEAGISAVVDFIFNH 187
|
| >3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A Length = 644 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 43 RNLERKVPDISKSGFTSVWLPP---ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKM 99
+ + +VP + + G + L P A G+ + + S GS L AL ++
Sbjct: 106 QGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRL 165
Query: 100 KQHKVRAMADIVINH 114
++ + AD V+NH
Sbjct: 166 REAGISLCADFVLNH 180
|
| >1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A* Length = 504 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 13/77 (16%)
Query: 43 RNLERKVPDISKSGFTSVWLPPATHSFAPE-----GYLPQNLYSLNSSYGSEHLLKALLH 97
+++ + + V + P F P G+ P + ++ GS + L
Sbjct: 20 KSMTDILRTRFDGVYDGVHILP---FFTPFDGADAGFDPIDHTKVDERLGSWDDVAELSK 76
Query: 98 KMKQHKVRAMADIVINH 114
M D ++NH
Sbjct: 77 TH-----NIMVDAIVNH 88
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 413 | |||
| 1ht6_A | 405 | AMY1, alpha-amylase isozyme 1; barley, beta-alpha- | 100.0 | |
| 1gcy_A | 527 | Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b | 100.0 | |
| 1lwj_A | 441 | 4-alpha-glucanotransferase; alpha-amylase family, | 100.0 | |
| 2wc7_A | 488 | Alpha amylase, catalytic region; CD/PUL-hydrolyzin | 100.0 | |
| 3bh4_A | 483 | Alpha-amylase; calcium, carbohydrate metabolism, g | 100.0 | |
| 1hvx_A | 515 | Alpha-amylase; hydrolase, glycosyltransferase, the | 100.0 | |
| 1wza_A | 488 | Alpha-amylase A; hydrolase, halophilic, thermophil | 100.0 | |
| 1ud2_A | 480 | Amylase, alpha-amylase; calcium-free, alkaline, hy | 100.0 | |
| 2z1k_A | 475 | (NEO)pullulanase; hydrolase, structural genomics, | 100.0 | |
| 1wpc_A | 485 | Glucan 1,4-alpha-maltohexaosidase; maltohexaose-pr | 100.0 | |
| 3edf_A | 601 | FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c | 100.0 | |
| 1mxg_A | 435 | Alpha amylase; hyperthermostable, family 13 glycos | 100.0 | |
| 4aef_A | 645 | Neopullulanase (alpha-amylase II); hydrolase, ther | 100.0 | |
| 2aaa_A | 484 | Alpha-amylase; glycosidase; 2.10A {Aspergillus nig | 100.0 | |
| 1j0h_A | 588 | Neopullulanase; beta-alpha-barrels, hydrolase; 1.9 | 100.0 | |
| 4aee_A | 696 | Alpha amylase, catalytic region; hydrolase, hypert | 100.0 | |
| 1ea9_C | 583 | Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A | 100.0 | |
| 1wzl_A | 585 | Alpha-amylase II; pullulan, GH-13, alpha-amylase f | 100.0 | |
| 3dhu_A | 449 | Alpha-amylase; structural genomics, hydrolase, gly | 100.0 | |
| 1g94_A | 448 | Alpha-amylase; beta-alpha-8-barrel, 3 domain struc | 100.0 | |
| 1jae_A | 471 | Alpha-amylase; glycosidase, carbohydrate metabolis | 100.0 | |
| 2guy_A | 478 | Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; | 100.0 | |
| 2zic_A | 543 | Dextran glucosidase; TIM barrel, (beta/alpha)8-bar | 100.0 | |
| 3bc9_A | 599 | AMYB, alpha amylase, catalytic region; acarbose, t | 100.0 | |
| 1m53_A | 570 | Isomaltulose synthase; klebsiella SP. LX3, sucrose | 100.0 | |
| 1qho_A | 686 | Alpha-amylase; glycoside hydrolase, starch degrada | 100.0 | |
| 1cyg_A | 680 | Cyclodextrin glucanotransferase; glycosyltransfera | 100.0 | |
| 3bmv_A | 683 | Cyclomaltodextrin glucanotransferase; glycosidase, | 100.0 | |
| 3k8k_A | 669 | Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, bet | 100.0 | |
| 1uok_A | 558 | Oligo-1,6-glucosidase; sugar degradation, hydrolas | 100.0 | |
| 1d3c_A | 686 | Cyclodextrin glycosyltransferase; alpha-amylase, p | 100.0 | |
| 1zja_A | 557 | Trehalulose synthase; sucrose isomerase, alpha-amy | 100.0 | |
| 4aie_A | 549 | Glucan 1,6-alpha-glucosidase; hydrolase, glycoside | 100.0 | |
| 1ji1_A | 637 | Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6 | 100.0 | |
| 3aj7_A | 589 | Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydro | 100.0 | |
| 2ze0_A | 555 | Alpha-glucosidase; TIM barrel, glucoside hydrolase | 100.0 | |
| 3czg_A | 644 | Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; | 100.0 | |
| 1g5a_A | 628 | Amylosucrase; glycosyltransferase, glycoside hydro | 100.0 | |
| 1ua7_A | 422 | Alpha-amylase; beta-alpha-barrels, acarbose, greek | 100.0 | |
| 3ucq_A | 655 | Amylosucrase; thermostability, amylose synthesis, | 100.0 | |
| 2bhu_A | 602 | Maltooligosyltrehalose trehalohydrolase; alpha-amy | 100.0 | |
| 4gqr_A | 496 | Pancreatic alpha-amylase; glycosyl hydrolase, diab | 100.0 | |
| 3zss_A | 695 | Putative glucanohydrolase PEP1A; alpha-glucan bios | 100.0 | |
| 2e8y_A | 718 | AMYX protein, pullulanase; multiple domain, beta-a | 100.0 | |
| 1m7x_A | 617 | 1,4-alpha-glucan branching enzyme; alpha/beta barr | 100.0 | |
| 3m07_A | 618 | Putative alpha amylase; IDP00968, csgid, structura | 100.0 | |
| 3vgf_A | 558 | Malto-oligosyltrehalose trehalohydrolase; alpha/be | 100.0 | |
| 1r7a_A | 504 | Sucrose phosphorylase; beta-alpha-barrels, dimer, | 100.0 | |
| 1bf2_A | 750 | Isoamylase; hydrolase, glycosidase, debranching en | 100.0 | |
| 3k1d_A | 722 | 1,4-alpha-glucan-branching enzyme; mycobacterium t | 100.0 | |
| 1gjw_A | 637 | Maltodextrin glycosyltransferase; alpha-amylase, m | 100.0 | |
| 2wan_A | 921 | Pullulanase; hydrolase, glycoside hydrolase, polys | 100.0 | |
| 3aml_A | 755 | OS06G0726400 protein; starch-branching, transferas | 100.0 | |
| 2vr5_A | 718 | Glycogen operon protein GLGX; hydrolase, glycosida | 100.0 | |
| 2dh2_A | 424 | 4F2 cell-surface antigen heavy chain; TIM-barrel, | 100.0 | |
| 2wsk_A | 657 | Glycogen debranching enzyme; carbohydrate metaboli | 100.0 | |
| 2ya0_A | 714 | Putative alkaline amylopullulanase; hydrolase, gly | 100.0 | |
| 3faw_A | 877 | Reticulocyte binding protein; TIM barrel, beta bar | 100.0 | |
| 2ya1_A | 1014 | Putative alkaline amylopullulanase; hydrolase, gly | 100.0 | |
| 2fhf_A | 1083 | Pullulanase; multiple domain, beta-alpha-barrel, a | 100.0 | |
| 4aio_A | 884 | Limit dextrinase; hydrolase, pullulanase, glycosid | 100.0 | |
| 1iv8_A | 720 | Maltooligosyl trehalose synthase; beta alpha barre | 100.0 | |
| 3hje_A | 704 | 704AA long hypothetical glycosyltransferase; treha | 99.97 | |
| 3aie_A | 844 | Glucosyltransferase-SI; beta-alpha-barrels; HET: M | 99.97 | |
| 3klk_A | 1039 | Glucansucrase; native form, open conformation, mul | 99.96 | |
| 3ttq_A | 1108 | Dextransucrase; (beta/alpha)8 barrel, transferase; | 99.88 | |
| 3aie_A | 844 | Glucosyltransferase-SI; beta-alpha-barrels; HET: M | 99.87 | |
| 3klk_A | 1039 | Glucansucrase; native form, open conformation, mul | 99.86 | |
| 3ttq_A | 1108 | Dextransucrase; (beta/alpha)8 barrel, transferase; | 99.74 | |
| 2yfo_A | 720 | Alpha-galactosidase-sucrose kinase agask; hydrolas | 98.79 | |
| 3mi6_A | 745 | Alpha-galactosidase; NESG, structural genomics, PS | 98.65 | |
| 2xn2_A | 732 | Alpha-galactosidase; hydrolase, glycosidase; HET: | 98.6 | |
| 4fnq_A | 729 | Alpha-galactosidase AGAB; glycoside hydrolase, hyd | 98.06 | |
| 3hje_A | 704 | 704AA long hypothetical glycosyltransferase; treha | 97.68 | |
| 1qnr_A | 344 | Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt | 97.57 | |
| 1zy9_A | 564 | Alpha-galactosidase; TM1192, struc genomics, joint | 97.54 | |
| 1esw_A | 500 | Amylomaltase; (beta,alpha)8-barrel, glucanotransfe | 97.38 | |
| 3lpp_A | 898 | Sucrase-isomaltase; glycoside hydrolase family 31, | 97.19 | |
| 3vmn_A | 643 | Dextranase; TIM barrel, immunoglobrin fold, greek- | 96.83 | |
| 3l4y_A | 875 | Maltase-glucoamylase, intestinal; glycoside hydrol | 96.8 | |
| 2g3m_A | 693 | Maltase, alpha-glucosidase; hydrolase, glycoside h | 96.51 | |
| 2f2h_A | 773 | Putative family 31 glucosidase YICI; BETA8alpha8 b | 96.34 | |
| 2p0o_A | 372 | Hypothetical protein DUF871; structural genomics, | 96.24 | |
| 4ba0_A | 817 | Alpha-glucosidase, putative, ADG31B; hydrolase; HE | 95.81 | |
| 1x1n_A | 524 | 4-alpha-glucanotransferase; disproportionating enz | 95.62 | |
| 2whl_A | 294 | Beta-mannanase, baman5; glycoside hydrolase, hydro | 95.61 | |
| 3vup_A | 351 | Beta-1,4-mannanase; TIM barrel, digestive fluid, H | 95.46 | |
| 1x7f_A | 385 | Outer surface protein; structural genomics, unknow | 95.38 | |
| 3nsx_A | 666 | Alpha-glucosidase; structural genomics, PSI-2, pro | 95.35 | |
| 1ece_A | 358 | Endocellulase E1; glycosyl hydrolase; HET: BGC; 2. | 95.22 | |
| 2xvl_A | 1020 | Alpha-xylosidase, putative, XYL31A; hydrolase, gly | 95.18 | |
| 3civ_A | 343 | Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1. | 95.07 | |
| 2c0h_A | 353 | Mannan endo-1,4-beta-mannosidase; hydrolase, signa | 94.93 | |
| 1bqc_A | 302 | Protein (beta-mannanase); glycosyl hydrolase, fami | 94.89 | |
| 1fob_A | 334 | Beta-1,4-galactanase; B/A barrel, glycosyl hydrola | 94.72 | |
| 1wky_A | 464 | Endo-beta-1,4-mannanase; TIM barrel, catalytic dom | 94.51 | |
| 3tty_A | 675 | Beta-GAL, beta-galactosidase; TIM barrel, glycosid | 94.46 | |
| 1tz7_A | 505 | 4-alpha-glucanotransferase; (beta, alpha)8- barrel | 94.44 | |
| 3jug_A | 345 | Beta-mannanase; TIM-barrel, glycosidase, hydrolase | 94.34 | |
| 1h4p_A | 408 | Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca | 94.29 | |
| 1uuq_A | 440 | Mannosyl-oligosaccharide glucosidase; hydrolase, m | 94.26 | |
| 3qho_A | 458 | Endoglucanase, 458AA long hypothetical endo-1,4-be | 94.11 | |
| 1ur4_A | 399 | Galactanase; hydrolase, beta-1, glycoside hydrolas | 94.1 | |
| 1kwg_A | 645 | Beta-galactosidase; TIM barrel, glycoside hydrolas | 94.04 | |
| 3pzg_A | 383 | Mannan endo-1,4-beta-mannosidase. glycosyl hydrol | 93.57 | |
| 1rh9_A | 373 | Endo-beta-mannanase; endo-beta-mannase, retaining, | 93.57 | |
| 1tvn_A | 293 | Cellulase, endoglucanase G; glycoside hydrolase, C | 93.55 | |
| 1hjs_A | 332 | Beta-1,4-galactanase; 4-galactanases, family 53 gl | 93.33 | |
| 2osx_A | 481 | Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel | 93.29 | |
| 3nco_A | 320 | Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1 | 93.25 | |
| 2ki0_A | 36 | DS119; beta-alpha-beta, de novo protein; NMR {Synt | 93.14 | |
| 1vjz_A | 341 | Endoglucanase; TM1752, structural genomics, JCSG, | 92.9 | |
| 3cc1_A | 433 | BH1870 protein, putative alpha-N-acetylgalactosami | 92.79 | |
| 1edg_A | 380 | Endoglucanase A; family A, cellulases, xylanases, | 92.63 | |
| 3n9k_A | 399 | Glucan 1,3-beta-glucosidase; aromatic entranceway/ | 92.45 | |
| 1g01_A | 364 | Endoglucanase; alpha/beta barrel, TIM barrel, hydr | 92.42 | |
| 1egz_A | 291 | Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CL | 92.31 | |
| 3icg_A | 515 | Endoglucanase D; cellulase, xylanase, carbohydrate | 92.08 | |
| 3pzt_A | 327 | Endoglucanase; alpha/beta barrel, glycosyl hydrola | 91.94 | |
| 4awe_A | 387 | Endo-beta-D-1,4-mannanase; hydrolase, endo-mannana | 91.66 | |
| 3qr3_A | 340 | Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A | 91.63 | |
| 1ceo_A | 343 | Cellulase CELC; glycosyl hydrolase, family A/5 of | 91.56 | |
| 3ndz_A | 345 | Endoglucanase D; cellotriose, xylanase, carbohydra | 91.4 | |
| 3gyc_A | 393 | Putative glycoside hydrolase; YP_001304622.1, stru | 91.02 | |
| 3ebv_A | 302 | Chinitase A; chitinase A, CHIA, glycosidase, struc | 90.97 | |
| 3aof_A | 317 | Endoglucanase; glycosyl hydrolase family 5, cellul | 90.83 | |
| 2cks_A | 306 | Endoglucanase E-5; carbohydrate metabolism, polysa | 90.81 | |
| 3top_A | 908 | Maltase-glucoamylase, intestinal; membrane, hydrol | 90.78 | |
| 3l55_A | 353 | B-1,4-endoglucanase/cellulase; putative beta-1,4-e | 90.71 | |
| 3n12_A | 333 | Chitinase A, chinctu2; zinc atoms, complex, hydrol | 90.15 | |
| 2y8k_A | 491 | Arabinoxylanase, carbohydrate binding family 6; hy | 90.12 | |
| 7a3h_A | 303 | Endoglucanase; hydrolase, cellulose degradation, g | 90.09 | |
| 3ayr_A | 376 | Endoglucanase; TIM barrel, hydrolase, carbohydrate | 89.84 | |
| 4hty_A | 359 | Cellulase; (alpha/beta)8 barrel, family 5 endogluc | 89.84 | |
| 2jep_A | 395 | Xyloglucanase; family 5, plant cell WALL, hydrolas | 89.35 | |
| 4axn_A | 328 | Chitinase C1; hydrolase; 1.68A {Serratia marcescen | 89.23 | |
| 1h1n_A | 305 | Endo type cellulase ENGI; hydrolase, glycosyl hydr | 88.87 | |
| 4ac1_X | 283 | Endo-N-acetyl-beta-D-glucosaminidase; hydrolase, g | 87.64 | |
| 1x1n_A | 524 | 4-alpha-glucanotransferase; disproportionating enz | 87.6 | |
| 3obe_A | 305 | Sugar phosphate isomerase/epimerase; structural ge | 87.53 | |
| 1jak_A | 512 | Beta-N-acetylhexosaminidase; glycoside hydrolase, | 86.95 | |
| 2zxd_A | 455 | Alpha-L-fucosidase, putative; TIM barrel, hydrolas | 86.83 | |
| 2cho_A | 716 | Glucosaminidase, hexosaminiase; O-GLCNACASE, hydro | 86.65 | |
| 2y8v_A | 290 | CHIC, class III chitinase, putative; afchic, hydro | 86.51 | |
| 3poh_A | 451 | Endo-beta-N-acetylglucosaminidase F1; TIM barrel, | 85.85 | |
| 3a24_A | 641 | Alpha-galactosidase; glycoside hydrolase family 97 | 85.76 | |
| 2ebn_A | 289 | Endo-beta-N-acetylglucosaminidase F1; hydrolase(gl | 84.97 | |
| 3eyp_A | 469 | Putative alpha-L-fucosidase; structural genomics, | 84.38 | |
| 3a21_A | 614 | Putative secreted alpha-galactosidase; beta-alpha- | 84.16 | |
| 3d3a_A | 612 | Beta-galactosidase; protein structure initiative I | 84.13 | |
| 3ozo_A | 572 | N-acetylglucosaminidase; beta-N-acetyl-D-hexosamin | 83.86 | |
| 1eok_A | 290 | Endo-beta-N-acetylglucosaminidase F3; alpha/beta-b | 83.43 | |
| 2x2h_A | 1027 | Alpha-1,4-glucan lyase isozyme 1; anhydrofructose | 83.36 | |
| 3thd_A | 654 | Beta-galactosidase; TIM-barrel domain, glycosyl hy | 82.89 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 82.62 | |
| 3fnd_A | 312 | Chitinase; TIM-barrel, structural genomics, PSI-2, | 82.45 | |
| 4e8d_A | 595 | Glycosyl hydrolase, family 35; TIM barrel, beta-pr | 82.43 | |
| 2w61_A | 555 | GAS2P, glycolipid-anchored surface protein 2; glyc | 82.17 | |
| 1tz7_A | 505 | 4-alpha-glucanotransferase; (beta, alpha)8- barrel | 81.76 | |
| 2aam_A | 309 | Hypothetical protein TM1410; structural genomics, | 81.6 | |
| 3ian_A | 321 | Chitinase; structural genomics, hydrolase, glycosi | 81.53 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 81.22 | |
| 1now_A | 507 | Beta-hexosaminidase beta chain; (beta/alpha)8-barr | 81.13 | |
| 1edt_A | 271 | Endo-beta-N-acetylglucosaminidase H, endo H; hydro | 80.8 |
| >1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-77 Score=596.37 Aligned_cols=387 Identities=47% Similarity=0.945 Sum_probs=321.2
Q ss_pred ceeEEEeeecCCCCC--ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCC-CCCCCHHHHHHHHHHHHH
Q 015125 25 REILFQGFNWESCKH--DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~--g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~h~ 101 (413)
++||+|+|+|+++++ |||+||+++|+|||+||||+|||+||++++++|||+|.|||+|+ |+|||+++|++||++||+
T Consensus 1 ~~v~~~~F~~d~~~d~~G~~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~ 80 (405)
T 1ht6_A 1 HQVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHG 80 (405)
T ss_dssp CCCEEECCCTTGGGCTTCHHHHHHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHH
T ss_pred CccEEEeEEcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCccccccCCCccCCCHHHHHHHHHHHHH
Confidence 469999999998887 69999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cCCEEEEEEccccCcCCCCCCCCcccccCCC----CCCCCCCCee----ccCCCCCCCcCCCCCCCCCcCCCCCHHHHHH
Q 015125 102 HKVRAMADIVINHRVGTTQGHGGKYNRYDGI----PLSWDEHAVT----SCTGGLGNGSTGDNFHGVPNIDHTQHFVRKD 173 (413)
Q Consensus 102 ~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~ 173 (413)
+||+||+|+|+||++.+++...+.|..|.+. +.+|.+...+ .+.++.+.+..++.+..+|+||++||+||++
T Consensus 81 ~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~ 160 (405)
T 1ht6_A 81 KGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRE 160 (405)
T ss_dssp TTCEEEEEECCSBCCCSEECTTSCEEECCCSSSSSTTCCCGGGBCTTCTTTCCSCSCCCSSCCCTTSCBBCTTCHHHHHH
T ss_pred CCCEEEEEECcCcccCCCCCCCCCcccCCCCCcCCCCCCCCccccCCCCCcCCCCCcccCCCCcCcCCccCcCCHHHHHH
Confidence 9999999999999999987655555544431 2445432111 1222223344566788999999999999999
Q ss_pred HHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCCCeEEEcccCCCCCC-CCCCCCccchhhHhHhhhhccCCCc-
Q 015125 174 IIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYN-SHGLDYNQDSHRQRIINWIDGTGQL- 251 (413)
Q Consensus 174 l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~~~~vgE~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~- 251 (413)
|++++++|++++||||||+|+|++++.+||++++++++|.+++||+|..+++. ++.++|......+.+..|++.+++.
T Consensus 161 i~~~~~~w~~~~gvDGfR~D~~~~~~~~f~~~~~~~~~p~~~igE~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~g~~~ 240 (405)
T 1ht6_A 161 LKEWLLWLKSDLGFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAA 240 (405)
T ss_dssp HHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHCCSCEEECCCCCCCBCTTSSBCSCCHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhccCCCEEEEeccccCCHHHHHHHHHhhCCceEEEEeccCCcccCccccccccchhHHHHHHHHhccCccc
Confidence 99999999978999999999999999999999999998888999999875542 3456665433456677777654333
Q ss_pred --ccccCccchHHHHHHhccchhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCee
Q 015125 252 --SAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIP 329 (413)
Q Consensus 252 --~~~~df~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP 329 (413)
.++|||.+...+.+++.++...+.+.++...+.++..|..+++|++|||++|+.+.+..+..++++|++++||+||+|
T Consensus 241 ~~~~vfdf~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~~fl~nHD~~r~~~~~~~~~~~~~~a~a~llt~pG~P 320 (405)
T 1ht6_A 241 SAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHPGIP 320 (405)
T ss_dssp SSEEEECHHHHHHHHHHTTTCGGGGSCTTSSCSSHHHHCGGGEEEESCCTTTSTTTCSSCCCGGGHHHHHHHHHHSSSEE
T ss_pred ccceeechhhHHHHHHHHhhhHHHHHhhhcccchhhhcChhhhhhccCCcCCccccccccCcHHHHHHHHHHHHhCCCcc
Confidence 345999988888888766555555443332233444567889999999999998877667788999999999999999
Q ss_pred EEecCcccCCchhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEECCEEEEEEcCCCCC--CCCCCcEEeeeCCc
Q 015125 330 SVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWC--PAGKEWTLATSGHK 407 (413)
Q Consensus 330 ~Iy~G~E~gw~~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r~~~~lv~lnn~~~~--~~~~~~~~~~s~~~ 407 (413)
+||||+|++|+ +++++++|++||+++|+|+.|+++.+..++++++|.|+++++|++|+++.. ...+.|+++++|.+
T Consensus 321 ~iy~G~e~~W~--~~~~~~~Li~lR~~~~al~~g~~~~~~~~~~v~af~R~~~~lv~~N~~~~~~~~~~~~~~~~~~~~~ 398 (405)
T 1ht6_A 321 CIFYDHFFNWG--FKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIPAGFVTSAHGND 398 (405)
T ss_dssp EEEHHHHHTSS--CHHHHHHHHHHHHHTTCCTTCCEEEEEEETTEEEEEETTTEEEEESSCSCCGGGSCTTCEEEEEETT
T ss_pred eEEcCCCcCch--HHHHHHHHHHHHHhCcccccCceEEEecCCCEEEEEECCeEEEEEcCCCcccccCCCccEEEecCCc
Confidence 99999999998 999999999999999999999999998889999999998999999997432 12258999999999
Q ss_pred eEEeeC
Q 015125 408 YAVWHK 413 (413)
Q Consensus 408 ~~~~~~ 413 (413)
|+||.+
T Consensus 399 ~~v~~~ 404 (405)
T 1ht6_A 399 YAVWEK 404 (405)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999985
|
| >1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-67 Score=543.04 Aligned_cols=373 Identities=28% Similarity=0.506 Sum_probs=290.2
Q ss_pred ccccCCceeEEEeeecCCCCC--ccH-HHHHhhhhhHHHcCCCEEEcCCCC----------CCCCCCCCCcccCCCCC--
Q 015125 19 AVIRNGREILFQGFNWESCKH--DWW-RNLERKVPDISKSGFTSVWLPPAT----------HSFAPEGYLPQNLYSLN-- 83 (413)
Q Consensus 19 ~~~~~~~~~i~~~f~~~~~~~--g~~-~gi~~~L~yLk~lGv~~I~L~Pi~----------~~~~~~gY~~~d~~~id-- 83 (413)
...+.+++||||+|+|+++++ ||| +||+++|||||+||||+||||||+ +++++|||+ ||+|+
T Consensus 10 ~~~~~~~~vi~q~F~w~~~~~~gGd~~~gi~~~LdyLk~LGvt~IwL~Pi~e~~~~~~~~~~~~~~~GY~---~~~id~~ 86 (527)
T 1gcy_A 10 VRYHGGDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYF---WHDFNKN 86 (527)
T ss_dssp CCCGGGCCCEEECCCTTHHHHSTTTHHHHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTT---CSSSCSC
T ss_pred eeecCCCcEEEEEEEcCCCcccCCcHHHHHHHHHHHHHhcCCCEEEeCCccccccccccCCCCCCCCCcc---cccCCCC
Confidence 445567789999999998877 899 999999999999999999999999 455789999 99999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCC---CCCCcccccCCCCCCCCCCCeeccCCCC-CCCcCCCCC-C
Q 015125 84 SSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ---GHGGKYNRYDGIPLSWDEHAVTSCTGGL-GNGSTGDNF-H 158 (413)
Q Consensus 84 ~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~---~~~~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 158 (413)
|+|||.+|||+||++||++||+||||+|+||++.+++ +. .+|.+ ..+... +..+..| ++++..+.| .
T Consensus 87 p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NHt~~~~~~~~~~-~~~~~-----~y~~~~--~~~~~~~~~~~~~~~~f~~ 158 (527)
T 1gcy_A 87 GRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEIN-LPAGQ-----GFWRND--CADPGNYPNDCDDGDRFIG 158 (527)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCSSCSCC-CCSSS-----SCBGGG--SCCCSSSCBTTBSSCCSTT
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEeecCcCCCCCCcccc-CCCcc-----hhcccc--cCCCCCcccCcccCccccc
Confidence 9999999999999999999999999999999999987 33 11100 011110 1001112 122333445 7
Q ss_pred CCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC-CCeEEEcccCCCCCCCCCCCCccchh
Q 015125 159 GVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR-PIFSVGEYWDSCNYNSHGLDYNQDSH 237 (413)
Q Consensus 159 ~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~-~~~~vgE~~~~~~~~~~~~~~~~~~~ 237 (413)
.+||||++||+||++|++++++|++++||||||+|+|++++.+||++++++++ |.+++||+|...+-. ....|.+...
T Consensus 159 ~~~dLn~~np~Vr~~i~~~~~~w~~~~gvDGfRlDa~~~i~~~f~~~~~~~~~~p~~~vgE~~~~~~~~-~~~~y~~~~~ 237 (527)
T 1gcy_A 159 GDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEY-PNWDWRNTAS 237 (527)
T ss_dssp STTBBCTTSHHHHHHHHHHHHHHHHHSCEEEEEESCGGGSCHHHHHHHHHHHCTTSEEEECCCCCGGGS-CTTSGGGGSC
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHhcCCceEEEEecCCCCcc-cccccccccc
Confidence 89999999999999999999999978999999999999999999999999997 788999999753100 0112222111
Q ss_pred -hHhHhhhhccCCCcccccCccchHHHHHHhccchhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCC------
Q 015125 238 -RQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPF------ 310 (413)
Q Consensus 238 -~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~------ 310 (413)
...+..|.+.. ..++|||.+...+.+++. ...++ ...+ ......|..+++|++|||++|+.+.+..
T Consensus 238 ~~~~~~~~~~~~--~~~~fdf~~~~~l~~~~~-~~~~l-~~~~---~~~~~~~~~~~~f~~nHD~~r~~~~~~g~~~~~~ 310 (527)
T 1gcy_A 238 WQQIIKDWSDRA--KCPVFDFALKERMQNGSI-ADWKH-GLNG---NPDPRWREVAVTFVDNHDTGYSPGQNGGQHHWAL 310 (527)
T ss_dssp HHHHHHHHHHHH--TSCEECHHHHHHHHHSCG-GGGGG-SGGG---CSSHHHHTTEEECSCCTTTSBCSSGGGBCCSSCC
T ss_pred hhhHHHHHhhcc--CCceechHHHHHHHHHHH-Hhhhh-hhcC---CccccChhhceEEEeCCCCCCcccccCccccccC
Confidence 23344555432 467899988777776654 22222 1111 1112345678999999999998765432
Q ss_pred ChhHHHHHHHHHhcCCCeeEEecCcccCCchhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEE--CCEEEEEEc
Q 015125 311 PSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAII--GDKVCMKIG 388 (413)
Q Consensus 311 ~~~~~~la~a~ll~~pGiP~Iy~G~E~gw~~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r--~~~~lv~ln 388 (413)
...++++|++++|++||+|+||||+|++|+ ++++||+|++||+++|+|+.|.++.+..+++++++.| +++++|++|
T Consensus 311 ~~~~~~~a~a~~lt~~G~P~iy~G~E~~W~--l~~~~~~Li~lRk~~~al~~g~~~~~~~~~~v~a~~r~~~~~~lv~~N 388 (527)
T 1gcy_A 311 QDGLIRQAYAYILTSPGTPVVYWDHMYDWG--YGDFIRQLIQVRRAAGVRADSAISFHSGYSGLVATVSGSQQTLVVALN 388 (527)
T ss_dssp CGGGHHHHHHHHHHSSSEEEEEHHHHHTSS--CHHHHHHHHHHHHHHTCCTTCEEEECTTSSSEEEEEECSSCEEEEEES
T ss_pred ChhHHHHHHHHHhCCCCcceeecccccCCh--HHHHHHHHHHHHHhChhhcCCceEEEecCCCEEEEEecCCCeEEEEEC
Confidence 357899999999999999999999999997 9999999999999999999999999888888999999 578999999
Q ss_pred CCCCC---CCCCCcEEeeeC--CceEEee
Q 015125 389 DGSWC---PAGKEWTLATSG--HKYAVWH 412 (413)
Q Consensus 389 n~~~~---~~~~~~~~~~s~--~~~~~~~ 412 (413)
+++.. .+.+.|++++++ ..+++|.
T Consensus 389 ~~~~~~~~v~~g~~~~~~~~~~~~~~~w~ 417 (527)
T 1gcy_A 389 SDLGNPGQVASGSFSEAVNASNGQVRVWR 417 (527)
T ss_dssp CCCCCGGGTCCSCCEEEEEETTTTEEEEE
T ss_pred CCCCCceeecCCceEEEEecCCCcEEEEE
Confidence 96533 245789999988 5888885
|
| >1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-66 Score=522.30 Aligned_cols=358 Identities=19% Similarity=0.235 Sum_probs=278.6
Q ss_pred eeEEEeeecCCCC-----CccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCK-----HDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (413)
Q Consensus 26 ~~i~~~f~~~~~~-----~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h 100 (413)
.||||+|.++|++ .|||+||+++|||||+||||+|||+||++++++|||+|.||++|+|+|||++||++||++||
T Consensus 1 ~viYei~~~~F~~~~~~g~Gd~~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~GY~~~dy~~idp~~Gt~~df~~lv~~aH 80 (441)
T 1lwj_A 1 MIGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFKAEYGSEREFKEMIEAFH 80 (441)
T ss_dssp CCEEEECHHHHCCSSSSSSCCHHHHHHTHHHHHHTTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHH
T ss_pred CeEEEEehHHhcCCCCCCccCHHHHHHhhHHHHHcCCCEEEeCCCcCCCCCCCCCcccccccCcccCCHHHHHHHHHHHH
Confidence 3799999998875 38999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEEEEccccCcCCCCCCC------Cccc---ccCCCCCCCCCCCeeccC--CCC-----CCCcCCCCCCCCCcCC
Q 015125 101 QHKVRAMADIVINHRVGTTQGHG------GKYN---RYDGIPLSWDEHAVTSCT--GGL-----GNGSTGDNFHGVPNID 164 (413)
Q Consensus 101 ~~Gi~VilD~V~NH~~~~~~~~~------~~y~---~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~dln 164 (413)
++||+||||+|+||++.+++|+. ++|. .+.+....+... ..+. ..| ......+.+..+||||
T Consensus 81 ~~Gi~VilD~V~NH~~~~~~~f~~~~~~~~~y~d~y~~~~~~~~~~~~--~~~~~~~~w~~~~~~~~y~~~f~~~~pdln 158 (441)
T 1lwj_A 81 DSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDER--REWDGEKIWHPLEDGRFYRGLFGPFSPDLN 158 (441)
T ss_dssp HTTCEEEEEECTTBCCTTCHHHHHHHTTCHHHHTTBCBCCTTSCTTCB--CSSSCCBCEEECTTSCEEECTTCTTSCBBC
T ss_pred HCCCEEEEEeCCCcccCchHHHHHHhccCCCCcceeeecCCCCCCccc--ccCCCccccccccCCceEEcccCCCCCccC
Confidence 99999999999999999987643 1222 122111111110 0000 111 1112233457899999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCC------cHHHHHHHHHhhCCCeEEEcccCCCCCCCCCCCCccchhh
Q 015125 165 HTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY------SAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHR 238 (413)
Q Consensus 165 ~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i------~~~~~~~~~~~~~~~~~vgE~~~~~~~~~~~~~~~~~~~~ 238 (413)
++||+||++|++++++|+++ ||||||+|+++++ +.+||+++.+.++.. ++||+|.. .
T Consensus 159 ~~np~V~~~l~~~~~~wl~~-gvDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~-~igE~~~~---------------~ 221 (441)
T 1lwj_A 159 YDNPQVFDEMKRLVLHLLDM-GVDGFRFDAAKHMRDTIEQNVRFWKYFLSDLKGI-FLAEIWAE---------------A 221 (441)
T ss_dssp SSSHHHHHHHHHHHHHHHTT-TCCEEEETTGGGSSSSHHHHHHHHHHHTTTCCSE-EEECCCSC---------------H
T ss_pred CCCHHHHHHHHHHHHHHHhC-CCCEEEEeChhhhccCCccHHHHHHHHHHHhHhh-EEEccCCC---------------H
Confidence 99999999999999999965 9999999999999 889999999988765 89999974 2
Q ss_pred HhHhhhhccCCCcccccCccchHHHHHHhc-cchhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCC-hhHHH
Q 015125 239 QRIINWIDGTGQLSAAFDFTTKGILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFP-SNHIM 316 (413)
Q Consensus 239 ~~l~~~~~~~~~~~~~~df~~~~~l~~~~~-g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~-~~~~~ 316 (413)
..+..|.. +++++|+|++...+..++. ++...+.+.+... ....+...++|++|||++|+.+.++.+ ..+++
T Consensus 222 ~~~~~y~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~fl~nHD~~R~~~~~~~~~~~~~~ 295 (441)
T 1lwj_A 222 RMVDEHGR---IFGYMLNFDTSHCIKEAVWKENTRVLIESIERA---VIAKDYLPVNFTSNHDMSRLASFEGGFSKEKIK 295 (441)
T ss_dssp HHHHHHHH---HHSEEECHHHHHHHHHHHHTTCSHHHHHHHHHH---TSSCSSEEEEESCCTTSCCGGGTTTCCCHHHHH
T ss_pred HHHHHHHH---hCCEeEehHHHHHHHHhhccCCHHHHHHHHHHH---hccCCCceeeeccCCCCCCcccccCCcHHHHHH
Confidence 44555654 3678999999888887763 3333333322110 111244678999999999999988755 67899
Q ss_pred HHHHHHhcCCCeeEEecCcccC------------------Cc--------------------------------hhHHHH
Q 015125 317 EGYAYILMHPGIPSVFYDHFYD------------------WG--------------------------------DSIHNQ 346 (413)
Q Consensus 317 la~a~ll~~pGiP~Iy~G~E~g------------------w~--------------------------------~~l~~~ 346 (413)
+|++++||+||+|+||||+|+| |. .+++++
T Consensus 296 ~a~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~R~~m~W~~~~~~g~~~~w~~~~~~~~~~~~~v~~q~~~~~~l~~~ 375 (441)
T 1lwj_A 296 LSISILFTLPGVPLVFYGDELGMKGVYQKPNTEVVLDPFPWNESMCVEGQTFWKWPAYNGPFSGISVEYQKRDPDSILSH 375 (441)
T ss_dssp HHHHHHHTSSSEEEEETTTTTTCCCCCCSSCGGGGSCCCCSSSSSCSTTCCCSSCCSSCCSSSSCSHHHHTTCTTSHHHH
T ss_pred HHHHHHHhCCCceEEEchHhhCCCCCCCCCCCccccCCcccccCCCCCCCCCCCCcccccccccCCHHHhhcCcHHHHHH
Confidence 9999999999999999999974 42 258999
Q ss_pred HHHHHHHHHhCcccCCCCeEEEEecCCEEEEEE---CCEEEEEEcCCCCCCCCCCcEEeeeCCceEE
Q 015125 347 IVKLMDVRRQQDIHSRSSIKILEAQSNLYSAII---GDKVCMKIGDGSWCPAGKEWTLATSGHKYAV 410 (413)
Q Consensus 347 i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r---~~~~lv~lnn~~~~~~~~~~~~~~s~~~~~~ 410 (413)
+|+|++||+++|+|+.|.++.+..++++++|.| ++.++|++|.++....-. ...|....|.|
T Consensus 376 ~~~L~~lR~~~~al~~g~~~~~~~~~~v~a~~R~~~~~~~lvv~N~~~~~~~~~--~~~l~p~~~~i 440 (441)
T 1lwj_A 376 TLGWTRFRKENQWIDRAKLEFLCKEDKFLVYRLYDDQHSLKVFHNLSGEEVVFE--GVKMKPYKTEV 440 (441)
T ss_dssp HHHHHHHHHHTGGGTTCEEEEEEECSSEEEEEEEETTEEEEEEEECSSSCEEET--TEEECTTCEEE
T ss_pred HHHHHHHHhCChhhhcCceEEEecCCCEEEEEEEeCCcEEEEEEECCCCCeeec--cccccccceee
Confidence 999999999999999999999888889999998 456888888865432100 14455555554
|
| >2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-66 Score=532.24 Aligned_cols=363 Identities=17% Similarity=0.264 Sum_probs=279.5
Q ss_pred ccccCCceeEEEeeecCCC----------C-----------------CccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCC
Q 015125 19 AVIRNGREILFQGFNWESC----------K-----------------HDWWRNLERKVPDISKSGFTSVWLPPATHSFAP 71 (413)
Q Consensus 19 ~~~~~~~~~i~~~f~~~~~----------~-----------------~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~ 71 (413)
|.|-++ .||||+|.+.|+ . .|||+||+++|||||+||||+|||+||++++++
T Consensus 6 ~~W~~~-~viYqi~~~~F~~~gd~~~d~~~~~~~~~w~~~~~~~~~~~Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~ 84 (488)
T 2wc7_A 6 PDWVKH-AVFYQIFPDRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGIMEDLDYIQNLGINAIYFTPIFQSASN 84 (488)
T ss_dssp CHHHHT-CCEEEECGGGTCCCSSCCCCSCTTCCGGGGGGCHHHHC-CCCCHHHHHHTHHHHHHHTCCEEEESCCEEECTT
T ss_pred CCcccc-ceEEEEccccccCCCCccCCcccccccccccCCCccCccCCcCHHHHHHhhHHHHHcCCCEEEECCCCCCCCC
Confidence 445333 699999999994 2 479999999999999999999999999999999
Q ss_pred CCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCC--------CcccccCCCCCCCCCCCeec
Q 015125 72 EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG--------GKYNRYDGIPLSWDEHAVTS 143 (413)
Q Consensus 72 ~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~--------~~y~~~~~~~~~~~~~~~~~ 143 (413)
|||+|.|||+|+|+|||.+||++||++||++||+||||+|+||++.+|+|+. +.|..|- .|...+...
T Consensus 85 ~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~s~y~~~y----~~~~~~~~~ 160 (488)
T 2wc7_A 85 HRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPWVNWF----KIEGWPLSP 160 (488)
T ss_dssp CTTSEEEEEEECGGGTHHHHHHHHHHHHHHTTCEEEEEECCSBCCSSSHHHHHHHHHGGGCTTGGGB----CBCSSSCCS
T ss_pred CCCCCcCccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCcCCCcCHHHHHHHhcCCCCCCCCce----eecCCCCCC
Confidence 9999999999999999999999999999999999999999999999987642 2232210 111101111
Q ss_pred cCCC-CCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHH-HHHHHHHhhC---C-CeEEE
Q 015125 144 CTGG-LGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAK-YVKEYIEGAR---P-IFSVG 217 (413)
Q Consensus 144 ~~~~-~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~-~~~~~~~~~~---~-~~~vg 217 (413)
+.+. ..+.........+||||++||+||++|++++++|+ ++||||||+|++++++.+ ||+++.+.++ | .+++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~pdln~~np~vr~~i~~~~~~Wl-~~gvDGfR~D~~~~i~~~~~~~~~~~~~~~~~p~~~~vg 239 (488)
T 2wc7_A 161 YNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYWL-KFGIDGWRLDVPFEIKTPGFWQEFRDRTKAINPEAYIVG 239 (488)
T ss_dssp SCTTSCCCBCBGGGCTTSBBBCTTSHHHHHHHHHHHHHHH-HHTCCEEEESSGGGCCCTTHHHHHHHHHHHHCTTCEEEE
T ss_pred CCCCCCCCccccCCCCCcCeeccCCHHHHHHHHHHHHHHH-HCCCCEEEEecccccChHHHHHHHHHHHHhhCCCeEEEE
Confidence 1100 00111111346799999999999999999999999 999999999999999998 9999988764 4 78999
Q ss_pred cccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccch-------------------hhhhhhc
Q 015125 218 EYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQF-------------------WRLRDAQ 278 (413)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~~-------------------~~~~~~~ 278 (413)
|+|... ..|+. +.+++++++|.+...+...+.+.. ..+...+
T Consensus 240 E~~~~~------------------~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (488)
T 2wc7_A 240 EVWGDS------------------RQWLD-GTQFDGVMNYLFAGPTIAFAAGDRVVLEQVQSRDYQPYPPLFAAEYATKI 300 (488)
T ss_dssp CCCSCC------------------GGGCS-SSSCSEEEEHHHHHHHHHHHTGGGCCGGGCCTTTCCCCSCCCHHHHHHHH
T ss_pred EecCCc------------------HHhhc-CCCcCceeCchHHHHHHHHHhcCccccccccccccccccCCCHHHHHHHH
Confidence 999652 13333 235778889888887777764321 1121111
Q ss_pred CCCCCccccc----CCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC----------------
Q 015125 279 GKPPGVMGWW----PSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD---------------- 338 (413)
Q Consensus 279 ~~~~~~~~~~----p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g---------------- 338 (413)
.. ..... +...++|++|||++|+.+.++.+..++++|++++||+||+|+||||+|+|
T Consensus 301 ~~---~~~~~~~~~~~~~~~f~~nHD~~R~~~~~~~~~~~~~~a~~~ll~~pG~P~iy~G~E~g~~~~~d~~~r~~~~~~ 377 (488)
T 2wc7_A 301 QE---VLQLYPWEIQLTQLNLLASHDTARLMTIAGGDIASVELSTLLLLTFPGAPSIYYGDEVGLPGGIDPDSRRGFPLE 377 (488)
T ss_dssp HH---HHTSSCHHHHTTCEECSCCTTSCCHHHHTTTCHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCC----CCCTTC
T ss_pred HH---HHHhccchhhcceeEeccccchhhHHHhcCCcHHHHHHHHHHHHhCCCCcEEEEeeccCcCCCCCchhhcCCCCc
Confidence 10 00111 23568999999999998887766788999999999999999999999985
Q ss_pred --CchhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEE---CCEEEEEEcCCCCC-----C--CCCCcEEeeeCC
Q 015125 339 --WGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAII---GDKVCMKIGDGSWC-----P--AGKEWTLATSGH 406 (413)
Q Consensus 339 --w~~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r---~~~~lv~lnn~~~~-----~--~~~~~~~~~s~~ 406 (413)
|..++++++|+|++||+++|+|+.|+++.+..++++++|.| +++++|++|++... + .++.|++++++.
T Consensus 378 ~~~~~~~~~~~~~Li~lRk~~~~l~~g~~~~~~~~~~v~a~~R~~~~~~~~v~~N~~~~~~~~~l~~~~~~~~~~~l~~~ 457 (488)
T 2wc7_A 378 ANWNQEIFNTHRQLITIRQTYPALRTGDYQVLYAQGQLYLFARTLGTEELIIAINAGTSSATANVDVASLHTQPNKLLYG 457 (488)
T ss_dssp -CCCHHHHHHHHHHHHHHHHCTHHHHSEEEEEEEETTEEEEEEEETTEEEEEEEECSSSCEEEEEECTTCSSCCCSEEES
T ss_pred cccCHHHHHHHHHHHHHHhhCccccCCCeEEEecCCCEEEEEEECCCCEEEEEEECCCCCEEEEecCCCCceeEEeecCC
Confidence 35679999999999999999999999999988888999999 56788999986532 1 225677777766
Q ss_pred ceE
Q 015125 407 KYA 409 (413)
Q Consensus 407 ~~~ 409 (413)
.+.
T Consensus 458 ~~~ 460 (488)
T 2wc7_A 458 TAE 460 (488)
T ss_dssp CC-
T ss_pred cee
Confidence 543
|
| >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-64 Score=516.08 Aligned_cols=358 Identities=24% Similarity=0.458 Sum_probs=272.8
Q ss_pred ceeEEEeeecCCCCC-ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCC---------CCCCCCCHHHH
Q 015125 25 REILFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYS---------LNSSYGSEHLL 92 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~-g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~---------id~~~Gt~~~~ 92 (413)
++||||+|+|+++++ |+|+||+++|+|||+||||+|||+||+++. .+|||++.|||+ |+|+|||++||
T Consensus 2 ~~vi~q~f~w~~~~~gG~~~gi~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~id~~~Gt~~df 81 (483)
T 3bh4_A 2 NGTLMQYFEWYTPNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSEL 81 (483)
T ss_dssp CCCEEECCCTTCCSSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTSCSSSEEETTCSSCSCCSSCSSCSSCCHHHH
T ss_pred CccEEEEEEeccCCCCCCHHHHHHHHHHHHhcCCCEEEcCccccCCCCCCCCcccccccccccccccCccCCCCCCHHHH
Confidence 379999999998887 699999999999999999999999999954 589999999995 99999999999
Q ss_pred HHHHHHHHHcCCEEEEEEccccCcC--CCCCC-------------------------------CCcccccCCCCCCCCCC
Q 015125 93 KALLHKMKQHKVRAMADIVINHRVG--TTQGH-------------------------------GGKYNRYDGIPLSWDEH 139 (413)
Q Consensus 93 ~~Lv~~~h~~Gi~VilD~V~NH~~~--~~~~~-------------------------------~~~y~~~~~~~~~~~~~ 139 (413)
++||++||++||+||||+|+||++. .++|+ .+.|.++ .|+..
T Consensus 82 ~~lv~~aH~~Gi~VilD~V~NH~~~~d~~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~y~~~-----~~~~~ 156 (483)
T 3bh4_A 82 QDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDF-----KWHWY 156 (483)
T ss_dssp HHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCC-----CBCGG
T ss_pred HHHHHHHHHCCCEEEEEEccCcccCcccccceeeeeeCccccccccccccccccccccccCCCCcccccC-----ccccc
Confidence 9999999999999999999999985 33221 1122211 11111
Q ss_pred Cee--cc---------------CCCCCC----CcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCC
Q 015125 140 AVT--SC---------------TGGLGN----GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 198 (413)
Q Consensus 140 ~~~--~~---------------~~~~~~----~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i 198 (413)
++. .+ ...|.. ...++.+..+||||++||+||++|++++++|++++||||||+|+|+++
T Consensus 157 ~~~~~d~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i 236 (483)
T 3bh4_A 157 HFDGADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHI 236 (483)
T ss_dssp GEEEEEEETTTTEEEEEEECSTTCCCCSSSCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGS
T ss_pred cCCCCCcccccCccccccccCCCCCcccccccccCccccccCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEechhcC
Confidence 100 00 122221 011234556799999999999999999999998899999999999999
Q ss_pred cHHHHHHHHHhh----CC-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhcc-chh
Q 015125 199 SAKYVKEYIEGA----RP-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG-QFW 272 (413)
Q Consensus 199 ~~~~~~~~~~~~----~~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g-~~~ 272 (413)
+.+||+++++++ ++ .+++||+|... ...+..|+..+++..++|||++...+.+++.+ +..
T Consensus 237 ~~~f~~~~~~~~~~~~~~~~~~igE~~~~~--------------~~~~~~y~~~~~~~~~~fd~~~~~~~~~~~~~~~~~ 302 (483)
T 3bh4_A 237 KFSFLRDWVQAVRQATGKEMFTVAEYWQNN--------------AGKLENYLNKTSFNQSVFDVPLHFNLQAASSQGGGY 302 (483)
T ss_dssp CHHHHHHHHHHHHHHHCSCCEEEECCCCSC--------------HHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCS
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEecCCC--------------hHHHHHHHhhcCCCceeecHHHHHHHHHHHhcCCcc
Confidence 999999998875 33 78999999752 24566777655555689999999889888743 323
Q ss_pred hhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCC-hhHHHHHHHHHhcCC-CeeEEecCcccCCch-------hH
Q 015125 273 RLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFP-SNHIMEGYAYILMHP-GIPSVFYDHFYDWGD-------SI 343 (413)
Q Consensus 273 ~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~-~~~~~la~a~ll~~p-GiP~Iy~G~E~gw~~-------~l 343 (413)
.+...+.. .+....|..+++|++|||++|+.+..... ..+.++|++++|++| |+|+||||+|+|..+ ++
T Consensus 303 ~l~~~~~~--~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~~a~a~~l~~~~G~P~iy~G~E~g~~g~~~~~~~~~ 380 (483)
T 3bh4_A 303 DMRRLLDG--TVVSRHPEKAVTFVENHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGTKGTSPKEIPSL 380 (483)
T ss_dssp CGGGTTTT--CHHHHCGGGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCCCCSSTTCCCCC
T ss_pred cHHHHHhh--hhhhcCCcceeeEcccCCCCccccccccchhHHHHHHHHHHHHCCCCeEEEEehhhcCCCCCCcccchHH
Confidence 34333321 11223456789999999999998876532 234789999999997 999999999998643 68
Q ss_pred HHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEEC---C----EEEEEEcCCC-C-----C---CCCCCcEEeeeCC
Q 015125 344 HNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAIIG---D----KVCMKIGDGS-W-----C---PAGKEWTLATSGH 406 (413)
Q Consensus 344 ~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r~---~----~~lv~lnn~~-~-----~---~~~~~~~~~~s~~ 406 (413)
..++++|++||+++ ..|.++.+..++++++|.|. + .++|++||.+ . . +.++.|++++++.
T Consensus 381 ~~~~~~Li~lR~~~---~~g~~~~~~~~~~~~af~R~~~~~~~~~~~~vvi~N~~~~~~~~~~~~~~~~~~~~d~l~~~ 456 (483)
T 3bh4_A 381 KDNIEPILKARKEY---AYGPQHDYIDHPDVIGWTREGDSSAAKSGLAALITDGPGGSKRMYAGLKNAGETWYDITGNR 456 (483)
T ss_dssp HHHHHHHHHHHHHT---CCSCEEEECCSSSEEEEEECCCTTSTTCCEEEEEESSCCEEEEEECCGGGTTCEEEETTSSC
T ss_pred HHHHHHHHHHHHHh---ccCCceEeeCCCCEEEEEEECCCCCCCCCEEEEEECCCCCcEEEEecCcCCCCeEEeccCCC
Confidence 99999999999995 68888887777789999992 2 4677766633 1 1 1456788887753
|
| >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-64 Score=520.72 Aligned_cols=360 Identities=24% Similarity=0.400 Sum_probs=274.8
Q ss_pred CCceeEEEeeecCCCCC-ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCC---------CCCCCCCHH
Q 015125 23 NGREILFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYS---------LNSSYGSEH 90 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~~-g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~---------id~~~Gt~~ 90 (413)
..++||||+|+|+++++ |+|+||+++|+|||+||||+|||+||+++. .+|||++.|||+ |+|+|||++
T Consensus 3 ~~~~v~~q~F~W~~~~~gG~~~gi~~~LdyLk~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~l~~f~~~~~idp~~Gt~~ 82 (515)
T 1hvx_A 3 PFNGTMMQYFEWYLPDDGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKA 82 (515)
T ss_dssp CCCCCEEECCCTTCCSSSCHHHHHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHH
T ss_pred CCCceEEEEEEccCCCCCCcHHHHHHHHHHHHhcCCCEEEeCCcccCCCCCCCCcCeecccccccccccCccCCCCCCHH
Confidence 45689999999998888 699999999999999999999999999954 589999999997 999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEccccCcC--CCCCC-------------------------------CCcccccCCCCCCCC
Q 015125 91 LLKALLHKMKQHKVRAMADIVINHRVG--TTQGH-------------------------------GGKYNRYDGIPLSWD 137 (413)
Q Consensus 91 ~~~~Lv~~~h~~Gi~VilD~V~NH~~~--~~~~~-------------------------------~~~y~~~~~~~~~~~ 137 (413)
||++||++||++||+||||+|+||++. .++++ .+.|.++ .|+
T Consensus 83 dfk~Lv~~aH~~Gi~VilD~V~NH~~~~d~~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~pg~~~~y~~~-----~~~ 157 (515)
T 1hvx_A 83 QYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSF-----KWR 157 (515)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCC-----CBC
T ss_pred HHHHHHHHHHHCCCEEEEEEecCCccCCCcccceeEEEecCcccccccccccccccccccccCCCCCccccC-----ccc
Confidence 999999999999999999999999975 23221 1122211 011
Q ss_pred CCCee--c----------c-----CCCCCCC----cCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccC
Q 015125 138 EHAVT--S----------C-----TGGLGNG----STGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (413)
Q Consensus 138 ~~~~~--~----------~-----~~~~~~~----~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~ 196 (413)
..++. . + ...|... ..++.+..+||||++||+||++|++++++|++++||||||+|+|+
T Consensus 158 ~~~~~~~d~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~dLn~~np~V~~~l~~~~~~w~~~~gvDGfRlDaa~ 237 (515)
T 1hvx_A 158 WYHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVK 237 (515)
T ss_dssp GGGEEEEEEETTTTEEEEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGG
T ss_pred ccccCCCCccccccccccccccCCCCCcccccccccCccccccCCccCCCCHHHHHHHHHHHHHHHHhcCCCEEEEehhh
Confidence 01100 0 0 1222210 112234567999999999999999999999988999999999999
Q ss_pred CCcHHHHHHHHHhh----CC-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhcc-c
Q 015125 197 GYSAKYVKEYIEGA----RP-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG-Q 270 (413)
Q Consensus 197 ~i~~~~~~~~~~~~----~~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g-~ 270 (413)
+++.+||+++++++ ++ .+++||+|... ...+..|+...++..+.|||++...+.+++.+ +
T Consensus 238 ~i~~~f~~~~~~~v~~~~~~~~~~igE~~~~~--------------~~~~~~y~~~~~~~~~~fd~~~~~~~~~~~~~~~ 303 (515)
T 1hvx_A 238 HIKFSFFPDWLSYVRSQTGKPLFTVGEYWSYD--------------INKLHNYIMKTNGTMSLFDAPLHNKFYTASKSGG 303 (515)
T ss_dssp GSCTTHHHHHHHHHHHHHCCCCEEEECCCCSC--------------HHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTT
T ss_pred hcCHHHHHHHHHHHHhhcCCCcEEEEEecCCC--------------hHHHHHHHhccCCcceeecHHHHHHHHHHHhcCC
Confidence 99999999998875 33 78999999752 35566777655556789999999889888743 2
Q ss_pred hhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCC-hhHHHHHHHHHhcCC-CeeEEecCcccCCc----hhHH
Q 015125 271 FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFP-SNHIMEGYAYILMHP-GIPSVFYDHFYDWG----DSIH 344 (413)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~-~~~~~la~a~ll~~p-GiP~Iy~G~E~gw~----~~l~ 344 (413)
...+...+.. .+....|..+++|++|||++|+.+..... ..+.++|++++|++| |+|+||||+|+|.. .++.
T Consensus 304 ~~~l~~~~~~--~~~~~~~~~~~~fl~nHD~~r~~s~~~~~~~~~~~la~a~~l~~~~G~P~iyyG~E~G~~~~~d~~~~ 381 (515)
T 1hvx_A 304 TFDMRTLMTN--TLMKDQPTLAVTFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYPCVFYGDYYGIPQYNIPSLK 381 (515)
T ss_dssp CSCGGGTTTT--CHHHHCGGGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCBGGGTBCCCH
T ss_pred chhHHHHHHh--hHhhcCCccceEEeccccCCcchhcccchhhHHHHHHHHHHHhCCCCceEEEeccccCCCCCCCchHH
Confidence 2234333321 11223456789999999999998876532 335789999999997 99999999999975 3688
Q ss_pred HHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEEC---C----EEEEEEcCCC-C-----C---CCCCCcEEeeeCC
Q 015125 345 NQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAIIG---D----KVCMKIGDGS-W-----C---PAGKEWTLATSGH 406 (413)
Q Consensus 345 ~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r~---~----~~lv~lnn~~-~-----~---~~~~~~~~~~s~~ 406 (413)
.+|++|++||+++ ..|+++.+..++++++|.|. + .++|+++|.+ . . +.++.|++++++.
T Consensus 382 ~~~~~L~~lR~~~---~~g~~~~~~~~~~~~af~R~~~~~~~~~~~vvvi~N~~~~~~~~~~~~~~~~~~~~dll~~~ 456 (515)
T 1hvx_A 382 SKIDPLLIARRDY---AYGTQHDYLDHSDIIGWTREGVTEKPGSGLAALITDGPGGSKWMYVGKQHAGKVFYDLTGNR 456 (515)
T ss_dssp HHHHHHHHHHHHT---CCSCEEEECCSSSEEEEEECCBTTBTTCCEEEEEESSSCEEEEEECCGGGTTCEEEETTSSC
T ss_pred HHHHHHHHHHHHh---ccCCceeEecCCCEEEEEEECCCCCCCCCEEEEEECCCCCcEEEEecCcCCCCeEEECcCCC
Confidence 9999999999994 78889888777789999992 2 4666666632 1 1 2456788888753
|
| >1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-65 Score=525.27 Aligned_cols=348 Identities=18% Similarity=0.290 Sum_probs=270.8
Q ss_pred ceeEEEeeecCCCC-----CccHHHHHhhhhhH--------HHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHH
Q 015125 25 REILFQGFNWESCK-----HDWWRNLERKVPDI--------SKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHL 91 (413)
Q Consensus 25 ~~~i~~~f~~~~~~-----~g~~~gi~~~L~yL--------k~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~ 91 (413)
..||||+|.++|++ .|||+||+++|||| |+||||+|||+||++++++|||+|.|||+|+|+|||++|
T Consensus 4 ~~viYqi~~~~F~~~~~~g~Gdl~gi~~~LdyL~~~~~~~~~~LGv~~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~d 83 (488)
T 1wza_A 4 HGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKINPDYGTLED 83 (488)
T ss_dssp CCCEEEECGGGSCCSSSSSCCCHHHHHHTHHHHCCSCTTCCSSCCCSEEEECCCEECSSSSCCSCSEEEEECGGGCCHHH
T ss_pred CcEEEEEEChhhcCCCCCCcCCHHHHHHhhhhhhccccchhhhcCccEEEECCcccCCCCCCcCcccccccCcccCCHHH
Confidence 36999999999987 48999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCCCCC-------Ccccc---cCCCCCCCCCCCeeccCCCCC----CCcCCCCC
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGHG-------GKYNR---YDGIPLSWDEHAVTSCTGGLG----NGSTGDNF 157 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~-------~~y~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 157 (413)
|++||++||++||+||||+|+||++.+|+|+. ++|.. +.+....+.....+ ....|. .......+
T Consensus 84 ~~~Lv~~aH~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~y~d~y~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~f~ 162 (488)
T 1wza_A 84 FHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLD-GGRVWHYSPTGMYYGYFW 162 (488)
T ss_dssp HHHHHHHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCCCBCSSS-CBCSEEEETTEEEECSSC
T ss_pred HHHHHHHHHHCCCEEEEEeccccccCccHhhhhhhcCCCCCCcCeeecCCCCCCCCCcccc-CCCcccccCCceEEeccC
Confidence 99999999999999999999999999987542 22322 22211111110000 001111 01122345
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcH--------HHHHHHHHhhC---CCeEEEcccCCCCCC
Q 015125 158 HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA--------KYVKEYIEGAR---PIFSVGEYWDSCNYN 226 (413)
Q Consensus 158 ~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~--------~~~~~~~~~~~---~~~~vgE~~~~~~~~ 226 (413)
..+||||++||+||++|++++++|+++ ||||||+|+++++.+ +||+++.+.++ |.+++||+|..
T Consensus 163 ~~~pdln~~np~Vr~~i~~~~~~Wl~~-gvDGfR~Da~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~vgE~~~~---- 237 (488)
T 1wza_A 163 SGMPDLNYNNPEVQEKVIGIAKYWLKQ-GVDGFRLDGAMHIFPPAQYDKNFTWWEKFRQEIEEVKPVYLVGEVWDI---- 237 (488)
T ss_dssp TTSCBBCTTSHHHHHHHHHHHHHHHHT-TCCEEEEECCCTTSCGGGTTHHHHHHHHHHHHHTTTSCCEEEEECCSC----
T ss_pred CCCcccccCCHHHHHHHHHHHHHHHHc-CCCChhHhhHhhhccccCcchHHHHHHHHHHHHhhcCCCEEEEEeCCC----
Confidence 789999999999999999999999966 999999999999974 89999998875 57789999974
Q ss_pred CCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHh-ccchhhhhhhcCCCCCcccc----cCCcceecccCCCC
Q 015125 227 SHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGW----WPSRAVTFLDNHDT 301 (413)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~-~g~~~~~~~~~~~~~~~~~~----~p~~~v~flenHD~ 301 (413)
...+..|... +++++|+|.+...+...+ .++...+...+......+.. .+...++|++|||+
T Consensus 238 -----------~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~fl~nHD~ 304 (488)
T 1wza_A 238 -----------SETVAPYFKY--GFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDAPFLTNHDQ 304 (488)
T ss_dssp -----------HHHHGGGGTT--TCSEEBCHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHTCTTSCCCBCBSCCTTS
T ss_pred -----------HHHHHHHHhc--CCCEEECHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccccccceeeeeccCCCc
Confidence 2455566542 478899999888776665 23322222211100000000 12346799999999
Q ss_pred CcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC---------------Cc--------------------------
Q 015125 302 GSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD---------------WG-------------------------- 340 (413)
Q Consensus 302 ~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g---------------w~-------------------------- 340 (413)
+|+.+.++.+..++++|++++||+||+|+||||+|+| |.
T Consensus 305 ~R~~~~~~~~~~~~~la~~~llt~pG~P~iy~G~E~G~~~~~~d~~~R~pm~w~~~~~~~~~~w~~~~~~~~~~~v~~q~ 384 (488)
T 1wza_A 305 NRILDQLGQDRNKARVAASIYLTLPGNPFIYYGEEIGMRGQGPHEVIREPFQWYNGSGEGETYWEPAMYNDGFTSVEQEE 384 (488)
T ss_dssp CCHHHHTTTCHHHHHHHHHHHTTSSSCCEEETTGGGTCCCCSSHHHHTCCCCCSSSCCTTCCCSSCCTTTTTTCCHHHHT
T ss_pred chhhhhhcCCHHHHHHHHHHHHhCCCCcEEEechhcCccCCCCCCCCcCCCCCCccCCCCCCCCCCCCcccccccHhhhc
Confidence 9998887666788999999999999999999999975 42
Q ss_pred ---hhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEE---CCEEEEEEcCCC
Q 015125 341 ---DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAII---GDKVCMKIGDGS 391 (413)
Q Consensus 341 ---~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r---~~~~lv~lnn~~ 391 (413)
.++++++|+|++||+++|+|+.|+++.+..++++++|.| +++++|++|.+.
T Consensus 385 ~~~~~~~~~~~~Li~lRk~~~al~~G~~~~~~~~~~v~a~~R~~~~~~~~v~~N~s~ 441 (488)
T 1wza_A 385 KNLDSLLNHYRRLIHFRNENPVFYTGKIEIINGGLNVVAFRRYNDKRDLYVYHNLVN 441 (488)
T ss_dssp TCTTSHHHHHHHHHHHHHHCTHHHHSEEEEECCCTTEEEEEEECSSCEEEEEEECSS
T ss_pred cCcHHHHHHHHHHHHHHhcChHhhCCeeEEEcCCCcEEEEEEECCCceEEEEEECCC
Confidence 368999999999999999999999998887788999998 467888999864
|
| >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-64 Score=514.74 Aligned_cols=358 Identities=22% Similarity=0.426 Sum_probs=273.7
Q ss_pred ceeEEEeeecCCCCC-ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCC---------CCCCCCCHHHH
Q 015125 25 REILFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYS---------LNSSYGSEHLL 92 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~-g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~---------id~~~Gt~~~~ 92 (413)
++||||+|+|+++++ |+|+||+++|||||+||||+|||+||+++. .+|||+|.||++ |+|+|||++||
T Consensus 4 ~~vi~q~f~w~~~~~gG~~~gi~~~LdyL~~LGvt~I~l~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~idp~~Gt~~df 83 (480)
T 1ud2_A 4 NGTMMQYYEWHLENDGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQL 83 (480)
T ss_dssp CCCEEECCCTTCCCSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHH
T ss_pred CceEEEeeeccCCCCCCcHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCcCccchhhcccccccCccCCCCCCHHHH
Confidence 479999999999988 599999999999999999999999999954 689999999995 99999999999
Q ss_pred HHHHHHHHHcCCEEEEEEccccCcC--CCCCCC-------------------------------CcccccCCCCCCCCCC
Q 015125 93 KALLHKMKQHKVRAMADIVINHRVG--TTQGHG-------------------------------GKYNRYDGIPLSWDEH 139 (413)
Q Consensus 93 ~~Lv~~~h~~Gi~VilD~V~NH~~~--~~~~~~-------------------------------~~y~~~~~~~~~~~~~ 139 (413)
++||++||++||+||||+|+||++. .++|+. +.|.++ .|+..
T Consensus 84 ~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~~w~~~~~pg~~~~y~~~-----~~~~~ 158 (480)
T 1ud2_A 84 ERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDF-----KWRWF 158 (480)
T ss_dssp HHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCGGGTTSSCCC-----CBCGG
T ss_pred HHHHHHHHHCCCEEEEEEccCccccccccccceeeecCCcccccccccccccccccccccCCCCCCcccC-----ccccc
Confidence 9999999999999999999999974 333321 112110 01111
Q ss_pred Cee--cc-------------CCCCCC----CcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcH
Q 015125 140 AVT--SC-------------TGGLGN----GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA 200 (413)
Q Consensus 140 ~~~--~~-------------~~~~~~----~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~ 200 (413)
+.. .+ ...|.. ...++.+..+||||++||+||++|++++++|++++||||||+|+|++++.
T Consensus 159 ~~~~~d~~~~~~~~~~~~~~~~~W~~~~~~~~g~~~~~~~~dLn~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i~~ 238 (480)
T 1ud2_A 159 HFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPF 238 (480)
T ss_dssp GEEEEEEETTTTEEEEEEETTCCCCSSCCCTTSCCCCCSSEEECTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCH
T ss_pred ccCCCCCcccccccccccccCCCcccccccccCccccccCCccCCCCHHHHHHHHHHHHHHHHccCCCEEEEcchhhCCH
Confidence 100 00 122221 01223456679999999999999999999999889999999999999999
Q ss_pred HHHHHHHHhhC----C-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhcc-chhhh
Q 015125 201 KYVKEYIEGAR----P-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG-QFWRL 274 (413)
Q Consensus 201 ~~~~~~~~~~~----~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g-~~~~~ 274 (413)
+||++++++++ + .+++||+|... ...+..|+...++..++|||++...+..++.+ +...+
T Consensus 239 ~f~~~~~~~~~~~~~~~~~~igE~~~~~--------------~~~~~~y~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l 304 (480)
T 1ud2_A 239 WYTSDWVRHQRNEADQDLFVVGEYWKDD--------------VGALEFYLDEMNWEMSLFDVPLNYNFYRASQQGGSYDM 304 (480)
T ss_dssp HHHHHHHHHHHHHCSSCCEEEECCCCSC--------------HHHHHHHHHHTTTCSEEECHHHHHHHHHHHHHCTTSCG
T ss_pred HHHHHHHHHHHHhcCCCcEEEEeccCCC--------------HHHHHHHHhccCCcceeechHHHHHHHHHHhcCCcccH
Confidence 99999988753 3 78999999752 34566777655555678999999999888743 22334
Q ss_pred hhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCC-hhHHHHHHHHHhcCC-CeeEEecCcccCCch----hHHHHHH
Q 015125 275 RDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFP-SNHIMEGYAYILMHP-GIPSVFYDHFYDWGD----SIHNQIV 348 (413)
Q Consensus 275 ~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~-~~~~~la~a~ll~~p-GiP~Iy~G~E~gw~~----~l~~~i~ 348 (413)
...+.. .+....|..+++|++|||++|+.+..... ..+.++|++++|++| |+|+||||+|+|..+ ++..+|+
T Consensus 305 ~~~~~~--~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~~a~a~~l~~~~G~P~iy~G~E~g~~g~~d~~~~~~~~ 382 (480)
T 1ud2_A 305 RNILRG--SLVEAHPMHAVTFVDNHDTQPGESLESWVADWFKPLAYATILTREGGYPNVFYGDYYGIPNDNISAKKDMID 382 (480)
T ss_dssp GGTTTT--CHHHHCGGGEEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHHHH
T ss_pred HHHHhc--cccccCCCceEEEeccCCCCccccccccchhHHHHHHHHHHHHCCCCceEEecchhhCCCCCCCchHHHHHH
Confidence 433321 11223456789999999999998876532 335789999999997 999999999998753 5789999
Q ss_pred HHHHHHHhCcccCCCCeEEEEecCCEEEEEEC---C----EEEEEEcCCCC------CC---CCCCcEEeeeCC
Q 015125 349 KLMDVRRQQDIHSRSSIKILEAQSNLYSAIIG---D----KVCMKIGDGSW------CP---AGKEWTLATSGH 406 (413)
Q Consensus 349 ~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r~---~----~~lv~lnn~~~------~~---~~~~~~~~~s~~ 406 (413)
+|++||+++ ..|.+..+..++++++|.|. + .++|++||.+. .+ .++.|++++++.
T Consensus 383 ~Li~lR~~~---~~g~~~~~~~~~~~~af~R~~~~~~~~~~~vvv~~N~~~~~~~~~~~~~~~~~~~~d~l~~~ 453 (480)
T 1ud2_A 383 ELLDARQNY---AYGTQHDYFDHWDVVGWTREGSSSRPNSGLATIMSNGPGGSKWMYVGRQNAGQTWTDLTGNN 453 (480)
T ss_dssp HHHHHHHHT---CCSCEEEECCSSSEEEEEECCCTTSTTCCEEEEEESSSCEEEEEECCGGGTTCEEEETTSSC
T ss_pred HHHHHHHHh---ccCCceEEecCCCEEEEEEEcCCCCCCCCEEEEEECCCCCcEEEEecCcCCCCEEEehhCCC
Confidence 999999996 67888887767789999992 2 47777676331 12 456788887753
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-65 Score=518.69 Aligned_cols=358 Identities=17% Similarity=0.250 Sum_probs=277.6
Q ss_pred eeEEEeeecCC-CC-------------------------CccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccC
Q 015125 26 EILFQGFNWES-CK-------------------------HDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNL 79 (413)
Q Consensus 26 ~~i~~~f~~~~-~~-------------------------~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~ 79 (413)
.||||+|...| ++ .|||+||+++|+|||+||||+|||+||++++++|||+|.||
T Consensus 7 ~viYqi~~~~F~~~gd~~~~~~g~~~~~~~~~~~~~~~~~G~~~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~gY~~~dy 86 (475)
T 2z1k_A 7 AFFYQIFPDRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTLWGVAEKLPYLLDLGVEAIYLNPVFASTANHRYHTVDY 86 (475)
T ss_dssp CCEEEECGGGSCCCSCCCSSCCCSCCCCTTSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEEESSTTCCSEEEE
T ss_pred ceEEEEccCeecCCCCcccCCCccccccccCCCCccccCCCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCcCCCCc
Confidence 68999999998 22 47999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCC--------CcccccCCCCCCCCCCCeeccCCCCCCC
Q 015125 80 YSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG--------GKYNRYDGIPLSWDEHAVTSCTGGLGNG 151 (413)
Q Consensus 80 ~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~--------~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (413)
|+|+|+|||++|||+||++||++||+||||+|+||++.+|+++. +.|..|- .|.......+. +..+.
T Consensus 87 ~~idp~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~~~y----~~~~~~~~~~~-~~~~y 161 (475)
T 2z1k_A 87 FQVDPILGGNEALRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQHLMENGEQSPYRDWY----HVKGFPLKAYT-AHPNY 161 (475)
T ss_dssp EEECGGGTCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGB----CBCSSSCCTTS-SSCSB
T ss_pred CccCcccCCHHHHHHHHHHHHHCCCEEEEEEecccccCCCHHHHHHHhcCCCCCCccee----ecCCCCCcCCC-CCCCc
Confidence 99999999999999999999999999999999999999987532 2232110 11110000000 00111
Q ss_pred cCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHH-HHHHHHHhhC---C-CeEEEcccCCCCCC
Q 015125 152 STGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAK-YVKEYIEGAR---P-IFSVGEYWDSCNYN 226 (413)
Q Consensus 152 ~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~-~~~~~~~~~~---~-~~~vgE~~~~~~~~ 226 (413)
........+|+||++||+||++|++++++|+ ++||||||+|++++++.+ ||+++.+.++ | .+++||+|....
T Consensus 162 ~~~~~~~~~pdln~~np~v~~~i~~~~~~w~-~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~p~~~~igE~~~~~~-- 238 (475)
T 2z1k_A 162 EAWWGNPELPKLKVETPAVREYLLAVAEHWI-RFGVDGWRLDVPNEIPDPTFWREFRQRVKGANPEAYIVGEIWEEAD-- 238 (475)
T ss_dssp CBGGGCTTSBBBCTTSHHHHHHHHHHHHHHH-HHTCCEEEESSGGGCCCHHHHHHHHHHHHHHCTTCEEEECCSSCCS--
T ss_pred cccCCCCCcCccccCCHHHHHHHHHHHHHHH-HCCCCEEeecccccCCHHHHHHHHHHHHhhcCCCcEEEEEecCCcc--
Confidence 1112347799999999999999999999999 999999999999999998 9999988764 4 789999996521
Q ss_pred CCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccch-------------------hhhhhhcCCCCCccc-
Q 015125 227 SHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQF-------------------WRLRDAQGKPPGVMG- 286 (413)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~~-------------------~~~~~~~~~~~~~~~- 286 (413)
.|+. +.+++++++|.+...+.+.+.++. ..+...+......+.
T Consensus 239 ----------------~~~~-~~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 301 (475)
T 2z1k_A 239 ----------------FWLQ-GDMFDAVMNYPLARAVLGFVGGEALDRDLAAQTGLGRIEPLQALAFSHRLEDLFGRYRP 301 (475)
T ss_dssp ----------------GGGS-SSSCSEEBCHHHHHHHHHHHHGGGSCHHHHTTSTTCSCCCCCHHHHHHHHHHHTTSSCH
T ss_pred ----------------cccc-CCCcCeeeChhHHHHHHHHHhCCccccccccccccccccCCCHHHHHHHHHHHHHhccc
Confidence 2332 235778899988888887764321 122211110000010
Q ss_pred ccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC--------------Cc-----hhHHHHH
Q 015125 287 WWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD--------------WG-----DSIHNQI 347 (413)
Q Consensus 287 ~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g--------------w~-----~~l~~~i 347 (413)
..+...++|++|||++|+.+.++.+..++++|++++|++||+|+||||+|+| |+ .++++++
T Consensus 302 ~~~~~~~~f~~nHD~~R~~~~~~~~~~~~~~a~a~ll~~pG~P~iy~G~E~g~~~~~d~~~r~~~~W~~~~~~~~l~~~~ 381 (475)
T 2z1k_A 302 EVVRAQMNLLTSHDTPRLLSLMRGSVERARLALALLFLLPGNPTVYYGEEVGMAGGKDPENRGGMVWEEARWQKDLRETV 381 (475)
T ss_dssp HHHTTCEECSCCTTSCCHHHHTTTCHHHHHHHHHHHTTSSSEEEEETTGGGTCCCCSTTTTCCCCCCCGGGSCHHHHHHH
T ss_pred hhhhhheeeccCCchhhHHHhcCCcHHHHHHHHHHHHhCCCCCEEEeecccCcCCCCChhhccCCCCCcccccHHHHHHH
Confidence 1123568999999999998877656788999999999999999999999975 43 3799999
Q ss_pred HHHHHHHHhCcccCCCCeEEEEecCCEEEEEECCEEEEEEcCCCCC-----C-CC-----CCcEEeeeCCceE
Q 015125 348 VKLMDVRRQQDIHSRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWC-----P-AG-----KEWTLATSGHKYA 409 (413)
Q Consensus 348 ~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r~~~~lv~lnn~~~~-----~-~~-----~~~~~~~s~~~~~ 409 (413)
|+|++||+++|+|+.|.++.+..++++++|.| ++++|++|++... | .. +.|++++++..+.
T Consensus 382 ~~Li~lRk~~~~l~~g~~~~~~~~~~v~a~~R-~~~lv~~N~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 453 (475)
T 2z1k_A 382 KRLARLRKEHPALRTAPYLRIYAQDGHLAFAR-GPYLAVVNASPHPFRQDFPLHGVFPRGGRAVDLLSGEVCT 453 (475)
T ss_dssp HHHHHHHHHCTHHHHSCCEEEEEETTEEEEEE-TTEEEEEECSSSCEECCSBCTTSCTTCCCEEETTTCCEEC
T ss_pred HHHHHHHhcCHhhcCCceEEEecCCCEEEEEE-CeEEEEEECCCCCEEEEeccccccccCceeeeeecCceeE
Confidence 99999999999999999999988889999999 8899999996532 2 11 5678888877654
|
| >1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-64 Score=512.15 Aligned_cols=364 Identities=24% Similarity=0.440 Sum_probs=272.9
Q ss_pred CceeEEEeeecCCCCC-ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCC---------CCCCCCCHHH
Q 015125 24 GREILFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYS---------LNSSYGSEHL 91 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~-g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~---------id~~~Gt~~~ 91 (413)
.++||||+|.|+++++ |+|+||+++|||||+||||+|||+||+++. .+|||+|.|||+ |+|+|||++|
T Consensus 5 ~~~vi~q~f~w~~~~~gG~~~gi~~~LdyL~~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~~~~~~q~~~idp~~Gt~~d 84 (485)
T 1wpc_A 5 TNGTMMQYFEWYLPNDGNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQ 84 (485)
T ss_dssp CCCCEEECCCTTCCSSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSCSSCCHHH
T ss_pred CCceEEEEEecCCCCCCCcHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCCCeecccccccccccCccCCCCCCHHH
Confidence 3579999999998887 699999999999999999999999999954 689999999995 9999999999
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcC--CCCCC-------------------------------CCcccccCC-----CC
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVG--TTQGH-------------------------------GGKYNRYDG-----IP 133 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~--~~~~~-------------------------------~~~y~~~~~-----~~ 133 (413)
|++||++||++||+||||+|+||++. .++|+ .+.|.++.. .+
T Consensus 85 f~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~ 164 (485)
T 1wpc_A 85 LQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDG 164 (485)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEE
T ss_pred HHHHHHHHHHCCCEEEEEEeccccCCCCcCcceeEEeeCccccccccccccccccccccCCCCCCCccccCccccccCCC
Confidence 99999999999999999999999974 33321 112221100 00
Q ss_pred CCCCCC-----Ceecc---CCCCCC----CcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHH
Q 015125 134 LSWDEH-----AVTSC---TGGLGN----GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAK 201 (413)
Q Consensus 134 ~~~~~~-----~~~~~---~~~~~~----~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~ 201 (413)
.+|.+. ..+.. ...|.. ...++.+..+||||++||+||++|++++++|++++||||||+|+|++++.+
T Consensus 165 ~d~~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i~~~ 244 (485)
T 1wpc_A 165 VDWDQSRRLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKYS 244 (485)
T ss_dssp ESCCTTTCCSSCEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHH
T ss_pred CCcccccccccceeeecCCCCCcccccccccCCccccccCccccCCHHHHHHHHHHHHHHHHhCCCCEEEhHhhhcCCHH
Confidence 011110 00000 112211 011233456799999999999999999999998899999999999999999
Q ss_pred HHHHHHHhhC----C-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhcc-chhhhh
Q 015125 202 YVKEYIEGAR----P-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG-QFWRLR 275 (413)
Q Consensus 202 ~~~~~~~~~~----~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g-~~~~~~ 275 (413)
||++++++++ + .+++||+|... ...+..|+..+++..+.|||++...+.+++.+ ....+.
T Consensus 245 f~~~~~~~~~~~~~~~~~~igE~~~~~--------------~~~~~~y~~~~~~~~~~fd~~~~~~~~~~~~~~~~~~l~ 310 (485)
T 1wpc_A 245 FTRDWINHVRSATGKNMFAVAEFWKND--------------LGAIENYLQKTNWNHSVFDVPLHYNLYNASKSGGNYDMR 310 (485)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECCCCSC--------------HHHHHHHHHHTTTCSEEECHHHHHHHHHHHTTTTCSCGG
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeccCC--------------hHHHHHHHhhcCCcceeeCHHHHHHHHHHHccCCcccHH
Confidence 9999988753 3 78999999752 34566777655555678999998889888753 223343
Q ss_pred hhcCCCCCcccccCCcceecccCCCCCcCCCCCCCC-hhHHHHHHHHHhcCC-CeeEEecCcccCCc----hhHHHHHHH
Q 015125 276 DAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFP-SNHIMEGYAYILMHP-GIPSVFYDHFYDWG----DSIHNQIVK 349 (413)
Q Consensus 276 ~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~-~~~~~la~a~ll~~p-GiP~Iy~G~E~gw~----~~l~~~i~~ 349 (413)
..+.. .+....|..+++|++|||++|+.+..... ..+.++|++++|++| |+|+||||+|+|.. .++..+|++
T Consensus 311 ~~~~~--~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~~a~a~~l~~~~G~P~iy~G~E~g~~~~~d~~~~~~~~~ 388 (485)
T 1wpc_A 311 NIFNG--TVVQRHPSHAVTFVDNHDSQPEEALESFVEEWFKPLAYALTLTREQGYPSVFYGDYYGIPTHGVPAMRSKIDP 388 (485)
T ss_dssp GTTTT--CHHHHCGGGEEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHHHHH
T ss_pred HHHhh--hhcccCCCcceEEeccCCCCccccccccchhHHHHHHHHHHHhCCCCeeEEEeccccCcCCCCCccHHHHHHH
Confidence 33221 11223456779999999999998876532 234789999999997 99999999999975 368899999
Q ss_pred HHHHHHhCcccCCCCeEEEEecCCEEEEEEC---C----EEEEEEcCCC-C-----CC---CCCCcEEeeeCC
Q 015125 350 LMDVRRQQDIHSRSSIKILEAQSNLYSAIIG---D----KVCMKIGDGS-W-----CP---AGKEWTLATSGH 406 (413)
Q Consensus 350 L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r~---~----~~lv~lnn~~-~-----~~---~~~~~~~~~s~~ 406 (413)
|++||+++ ..|+++.+..++++++|.|. + ..+|+++|.+ . .+ .++.|++++++.
T Consensus 389 Li~lR~~~---~~g~~~~~~~~~~~~a~~R~~~~~~~~~~~~vv~~N~~~~~~~~~~~~~~~~~~~~d~l~~~ 458 (485)
T 1wpc_A 389 ILEARQKY---AYGKQNDYLDHHNIIGWTREGNTAHPNSGLATIMSDGAGGSKWMFVGRNKAGQVWSDITGNR 458 (485)
T ss_dssp HHHHHHHT---CCSCEEEECCSSSEEEEEECCCTTSTTCCEEEEEESSSCEEEEEECCGGGTTCEEEETTSSS
T ss_pred HHHHHHHh---ccCCcceeecCCCEEEEEEECCCCCCCCCEEEEEECCCCCcEEEEecCCCCCceEEeccCCC
Confidence 99999996 67888888767789999992 2 4666655532 1 11 356788888754
|
| >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-64 Score=528.38 Aligned_cols=365 Identities=16% Similarity=0.257 Sum_probs=281.9
Q ss_pred eeEEEeeecCCCC------------------------CccHHHHHhhhhhHHHcCCCEEEcCCCCCCC----CCCCCCcc
Q 015125 26 EILFQGFNWESCK------------------------HDWWRNLERKVPDISKSGFTSVWLPPATHSF----APEGYLPQ 77 (413)
Q Consensus 26 ~~i~~~f~~~~~~------------------------~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~----~~~gY~~~ 77 (413)
.||||+|...|++ .|||+||+++|||||+||||+|||+||++++ ++|||++.
T Consensus 107 ~viY~i~~drF~~gd~~nd~~~~~~~~~~~~~~~~~~gGdl~gi~~~Ldyl~~LGv~aI~l~Pi~~~~~~~~~~~GY~~~ 186 (601)
T 3edf_A 107 DAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAAT 186 (601)
T ss_dssp CCEEEECHHHHCCSCGGGSSCTTCSCCCCTTSTTSCCCCCHHHHHHTHHHHHHTTCCEEEESCCEECCCSSSGGGCCSCS
T ss_pred CeEEEEehHHhcCCCCCcCcCcCcccccCccccccccCcCHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCcCcc
Confidence 6899999886652 2789999999999999999999999999976 46999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCc-c-cccC---C-CCCCCCCCCeeccCCCCCCC
Q 015125 78 NLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGK-Y-NRYD---G-IPLSWDEHAVTSCTGGLGNG 151 (413)
Q Consensus 78 d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~-y-~~~~---~-~~~~~~~~~~~~~~~~~~~~ 151 (413)
||++|+|+|||.+||++||++||++||+||||+|+||++.+|+|+... | .+|. + .+..|... ...+++...
T Consensus 187 dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~p~~dw~~~~~~~~~~~~~~~---~~~d~~~~~ 263 (601)
T 3edf_A 187 DHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRV---AVQDPYAAQ 263 (601)
T ss_dssp EEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSGGGGSCSSTTSBGGGGSCCBCCCCGG---GGGCTTCCH
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCCEEEEEECCcccCCcchhhhhCCccCceeeCCCCCCCccccc---cccCCCCcc
Confidence 999999999999999999999999999999999999999999876431 1 1111 0 00111110 001111100
Q ss_pred ------cCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC---C-CeEEEcccC
Q 015125 152 ------STGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYWD 221 (413)
Q Consensus 152 ------~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~---~-~~~vgE~~~ 221 (413)
........+||||++||+||++|++++++|++++||||||+|++++++.+||++++++++ | .+++||+|.
T Consensus 264 ~~~~~~~~~wf~~~lpdLN~~np~V~~~l~~~~~~Wi~~~GVDGfRlD~~~~~~~~f~~~~~~~v~~~~p~~~~vgE~~~ 343 (601)
T 3edf_A 264 ADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLTEYTRRLMAEYPRLNMVGQEWS 343 (601)
T ss_dssp HHHHHHHHSBSSTTSCBBCTTSHHHHHHHHHHHHHHHHHHTCSEEEESSGGGSCHHHHHHHHHHHHHHCTTCEEEECCCC
T ss_pred ccccccccccccccccccccCCHHHHHHHHHHHHHHHhhcCCCEEEeeccccCCHHHHHHHHHHHHHhCCCeEEEeeecC
Confidence 001123689999999999999999999999999999999999999999999999988764 3 788999997
Q ss_pred CCCCCCCCCCCccchhhHhHhhhhcc-------CCCcccccCccchHHHHHHhccc-----hhhhhhhcCCCCCcccccC
Q 015125 222 SCNYNSHGLDYNQDSHRQRIINWIDG-------TGQLSAAFDFTTKGILQEAVKGQ-----FWRLRDAQGKPPGVMGWWP 289 (413)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~df~~~~~l~~~~~g~-----~~~~~~~~~~~~~~~~~~p 289 (413)
.. ...+..|... ..++.++|||++...+.+++.+. ...+.+.+.. ......+
T Consensus 344 ~~--------------~~~~~~~~~~~~~~~~~~~~l~~v~nf~~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 407 (601)
T 3edf_A 344 TR--------------VPVVARWQRGKANFDGYTSHLPSLMDFPLVDAMRNALSKTGEENGLNEVYETLSL--DYLYPEP 407 (601)
T ss_dssp SC--------------HHHHHTTSTTCCCTTCCCCCCCEEBCHHHHHHHHHHHHCTTSSSTTHHHHHHHGG--GGGSSCG
T ss_pred Cc--------------hHHHhhhhccccccccccccCCeEEChHHHHHHHHHHhccchhhHHHHHHHHHhh--hcccCCc
Confidence 53 2333444332 23467899999999999888543 2233333221 1111124
Q ss_pred CcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC--------------------Cc---------
Q 015125 290 SRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD--------------------WG--------- 340 (413)
Q Consensus 290 ~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g--------------------w~--------- 340 (413)
...++|++|||++|+.+.++.+..++++|++++||+||+|+||||+|+| |.
T Consensus 408 ~~~~~fl~NHD~~R~~s~~~~~~~~~k~a~alllt~pG~P~IYyG~E~G~~~~~~~~~d~~~R~~~p~~W~~~~~~~F~~ 487 (601)
T 3edf_A 408 QNLVLFGGNHDMARMFSAAGEDFDRWRMNLVFLMTMPRIPQFYSGDEILMTSTVKGRDDASYRRDFPGGWAGDKANAFSG 487 (601)
T ss_dssp GGSEEESCCTTSCCHHHHTTTCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCCSSCCGGGGCCCCTTSSTTCSSBTTTT
T ss_pred cceEEeeccCCCCCchhhcCCCHHHHHHHHHHHHhcCCCcEEEeehcccccCCCCCCCChhhhhcCccCcCcccccCcCc
Confidence 5789999999999998876667789999999999999999999999974 42
Q ss_pred -------hhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEE---CCEEEEEEcCCCCC-----C-------CCCC
Q 015125 341 -------DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAII---GDKVCMKIGDGSWC-----P-------AGKE 398 (413)
Q Consensus 341 -------~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r---~~~~lv~lnn~~~~-----~-------~~~~ 398 (413)
.++++++++|++||+++|+|+.|.++.+..++++++|.| ++.++|++|++... + .++.
T Consensus 488 ~~~~~~~~~l~~~~~~Li~lRk~~~al~~G~~~~~~~~~~v~af~R~~~~~~vlVv~N~s~~~~~~~l~~~~~~l~~~~~ 567 (601)
T 3edf_A 488 AGLTSQQRAAQDLVRKLANWRKNQPVIHNGRLMHFGPEENTWVYFRYNKDKRIMVAMNNNDKPMTLPTARFQEMLKGAPS 567 (601)
T ss_dssp BTCCHHHHHHHHHHHHHHHHHHTCHHHHHSEEEECCCBTTEEEEEEECSSEEEEEEEECSSSCEEEEGGGGHHHHTTCCE
T ss_pred cccccchHHHHHHHHHHHHHHhhCccccCCceEEEEecCCEEEEEEEcCCCEEEEEEECCCCCEEEECccchhhccCCCc
Confidence 468999999999999999999999999888889999999 56788899986532 1 2456
Q ss_pred cEEeeeCCceE
Q 015125 399 WTLATSGHKYA 409 (413)
Q Consensus 399 ~~~~~s~~~~~ 409 (413)
++++++|..+.
T Consensus 568 ~~dllsg~~~~ 578 (601)
T 3edf_A 568 GVDFLSGKTVG 578 (601)
T ss_dssp EEETTTCCEEE
T ss_pred eEEcccCcEEe
Confidence 77777766543
|
| >1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-63 Score=503.14 Aligned_cols=343 Identities=25% Similarity=0.494 Sum_probs=267.8
Q ss_pred CceeEEEeeecCCCCCcc-HHHHHhhhhhHHHcCCCEEEcCCCCCCCC---CCCCCcccCC---------CCCCCCCCHH
Q 015125 24 GREILFQGFNWESCKHDW-WRNLERKVPDISKSGFTSVWLPPATHSFA---PEGYLPQNLY---------SLNSSYGSEH 90 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~g~-~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~---~~gY~~~d~~---------~id~~~Gt~~ 90 (413)
.+.||||+|.|+++++|+ |+||+++|||||+||||+|||+||+++++ +|||+|.||| +|+|+|||++
T Consensus 8 ~~~viyq~f~w~~~~~G~~~~gi~~~Ldyl~~lGvt~I~l~Pi~~~~~~~~~~gY~~~dy~~lg~~~~~~~id~~~Gt~~ 87 (435)
T 1mxg_A 8 EGGVIMQAFYWDVPGGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKE 87 (435)
T ss_dssp GTCCEEECCCTTCCCSSCHHHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSSCSSCCHH
T ss_pred CCcEEEEEEEeccCCCCCHHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCCcCcccccccccccccCcCCCCCCCHH
Confidence 347999999999999999 99999999999999999999999999875 5899999999 5999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEccccCcCCCCCC---CCc--ccccCCC-----C---CCCCCCCeeccCCCCCCCcCCCCC
Q 015125 91 LLKALLHKMKQHKVRAMADIVINHRVGTTQGH---GGK--YNRYDGI-----P---LSWDEHAVTSCTGGLGNGSTGDNF 157 (413)
Q Consensus 91 ~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~---~~~--y~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
||++||++||++||+||+|+|+||++.++.+. .+. |..|... + .++++.+ +. .+....+
T Consensus 88 df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-------~~-~~~~g~~ 159 (435)
T 1mxg_A 88 ELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTANYLDFHPNE-------LH-CCDEGTF 159 (435)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSBCCCCEEEEETTTTEEEEEECTTCTTCCSCCCGGGBSSSS-------SC-SCCSCCC
T ss_pred HHHHHHHHHHHCCCEEEEEECcccccCCCcccCCCCCccccccCCCccCCCCccccccCCCCC-------cC-ccCCCcc
Confidence 99999999999999999999999999976421 111 1112110 0 0111110 00 0111236
Q ss_pred CCCCcCCCCCHHHHHHH----HHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCCCeEEEcccCCCCCCCCCCCCc
Q 015125 158 HGVPNIDHTQHFVRKDI----IAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYN 233 (413)
Q Consensus 158 ~~~~dln~~~~~vr~~l----~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~~~~vgE~~~~~~~~~~~~~~~ 233 (413)
..+||||++||+||+++ .+++++|+ ++||||||+|+|++++.+||+++.+++ +.+++||+|...
T Consensus 160 ~~~~dln~~np~V~~~l~~~~~~~~~~w~-~~gvDGfR~Da~~~i~~~f~~~~~~~~-~~~~vgE~~~~~---------- 227 (435)
T 1mxg_A 160 GGFPDICHHKEWDQYWLWKSNESYAAYLR-SIGFDGWRFDYVKGYGAWVVRDWLNWW-GGWAVGEYWDTN---------- 227 (435)
T ss_dssp TTSCBBCTTSHHHHHHHTSSTTSHHHHHH-HTTCCEEEETTGGGSCHHHHHHHHHHH-CCCEEECCCCSC----------
T ss_pred cCccccCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEhhhhhhccHHHHHHHHHhc-CceEEEccccCC----------
Confidence 78999999999999665 68999998 699999999999999999999999987 478899999763
Q ss_pred cchhhHhHhhhhccCCCcccccCccchHHHHHHhccc-hhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCCh
Q 015125 234 QDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ-FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPS 312 (413)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~-~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~ 312 (413)
...+..|+...+ .++|||+++..+.+++.+. ..++..............|..+++|++|||++|+..
T Consensus 228 ----~~~~~~~~~~~~--~~~fd~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~------ 295 (435)
T 1mxg_A 228 ----VDALLSWAYESG--AKVFDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWN------ 295 (435)
T ss_dssp ----HHHHHHHHHHHT--SEEECHHHHHHHHHHHTTTCHHHHHHHHHTTCSSTTTCTTTEEEESCCSSCCCCSC------
T ss_pred ----hHHHHhhhccCC--CceeehHHHHHHHHHHhcCCHHHHHHHHhccccccccCHHHhhhhcccCCccchhh------
Confidence 244667765432 6899999999999988543 334443322111222335668899999999998752
Q ss_pred hHHHHHHHHHhcCCCeeEEecCcccCCchhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEEC-----CEEEEEE
Q 015125 313 NHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAIIG-----DKVCMKI 387 (413)
Q Consensus 313 ~~~~la~a~ll~~pGiP~Iy~G~E~gw~~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r~-----~~~lv~l 387 (413)
.++|++++||+||+|+||||+|++|. +.++|++|+++|+ +++.|+++.+..++++++|.|. +.++|++
T Consensus 296 --~~~a~a~~lt~~G~P~iyyG~e~~~~--~~~~i~~L~~~r~---al~~g~~~~~~~~~~~~~~~R~~~~~~~~~~vv~ 368 (435)
T 1mxg_A 296 --KYPAYAFILTYEGQPVIFYRDFEEWL--NKDKLINLIWIHD---HLAGGSTTIVYYDNDELIFVRNGDSRRPGLITYI 368 (435)
T ss_dssp --HHHHHHHHHHSSSEEEEEHHHHHTTS--CHHHHHHHHHHHH---HTCCSCEEEEEECSSEEEEEECCCSSCCCEEEEE
T ss_pred --HHHHHHHHHcCCCccEEEecccccch--HHHHHHHHHHHHH---HhccCCeEEEecCCCEEEEEEeCCCCCCEEEEEE
Confidence 27999999999999999999999986 8899999999997 4689999999888899999882 3678899
Q ss_pred cCCCCC---------CCCCCcEEeeeC
Q 015125 388 GDGSWC---------PAGKEWTLATSG 405 (413)
Q Consensus 388 nn~~~~---------~~~~~~~~~~s~ 405 (413)
|+++.. ..++.|++++++
T Consensus 369 N~~~~~~~~~~~v~~~~~~~~~d~~~~ 395 (435)
T 1mxg_A 369 NLSPNWVGRWVYVPKFAGACIHEYTGN 395 (435)
T ss_dssp ECSSSCEEEEEECGGGTTCEEEESSCT
T ss_pred eCCCCCeEEEEEEEecCCCEEEecCCC
Confidence 985421 134566776654
|
| >4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-65 Score=535.41 Aligned_cols=348 Identities=16% Similarity=0.222 Sum_probs=267.9
Q ss_pred cccccCCceeEEEeeecCCCCC---------------ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCC
Q 015125 18 GAVIRNGREILFQGFNWESCKH---------------DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSL 82 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~~---------------g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~i 82 (413)
.|.|-++ .||||+|..+|++. |||+||++||||||+||||+||||||++++++|||++.||++|
T Consensus 200 ~P~W~~~-aViYqI~p~~F~~~~~~~g~~~~~~~~~gGdl~Gi~~kLdYLk~LGvt~I~L~Pif~s~~~~GYd~~dy~~i 278 (645)
T 4aef_A 200 FPTWVID-RVFYQIMPDKFARSRKIQGIAYPKDKYWGGDLIGIKEKIDHLVNLGINAIYLTPIFSSLTYHGYDIVDYFHV 278 (645)
T ss_dssp CCGGGGG-CCEEEECHHHHCCCSSCC---------CCCCHHHHHHTHHHHHHHTCCEEEECCCEEESSTTCSSEEEEEEE
T ss_pred CChhHcC-CEEEEEecchhcCCCCCCcccCCcCcCCCcCHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCcCccCCCcc
Confidence 4554333 69999999977642 8999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCC--------CcccccCCCCCCCCCCCeec--------cCC
Q 015125 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG--------GKYNRYDGIPLSWDEHAVTS--------CTG 146 (413)
Q Consensus 83 d~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~--------~~y~~~~~~~~~~~~~~~~~--------~~~ 146 (413)
+|+|||++||++||++||++||+||||+|+||+|.+|+|+. +.|.++-. |...+... ...
T Consensus 279 dp~~Gt~~df~~LV~~aH~~GI~VIlD~V~NHts~~h~wf~~~~~~~~~s~~~d~y~----~~~~~~~~~~~~~~~~~~~ 354 (645)
T 4aef_A 279 ARRLGGDRAFVDLLSELKRFDIKVILDGVFHHTSFFHPYFQDVVRKGENSSFKNFYR----IIKFPVVSKEFLQILHSKS 354 (645)
T ss_dssp CGGGTCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHHSTTCTTGGGBC----BSSSSCSCTTHHHHHHHSC
T ss_pred CcccCCHHHHHHHHHHhhhcCCEEEEEecccccccCCchhhhHhhcCCCCCcccccE----eccCCCcccccccccCCCc
Confidence 99999999999999999999999999999999999997542 23322210 00000000 000
Q ss_pred CCCCC-----------cCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCC-Ce
Q 015125 147 GLGNG-----------STGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARP-IF 214 (413)
Q Consensus 147 ~~~~~-----------~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~-~~ 214 (413)
.|... ........+||||++||+||+++++++++|+ ++||||||+|+|++++++||+++.+++++ .+
T Consensus 355 ~w~~~~~~~~~~~~~y~~~~~~~~~pdLn~~np~V~~~~~~~~~~Wl-~~gvDGfR~D~a~~i~~~f~~~~~~~~~~~~~ 433 (645)
T 4aef_A 355 SWEEKYKKIKSLGWNYESFFSVWIMPRLNHDNPKVREFIKNVILFWT-NKGVDGFRMDVAHGVPPEVWKEVREALPKEKY 433 (645)
T ss_dssp GGGTTHHHHHHHCCSBCEETTEEEEEBBCTTSHHHHHHHHHHHHHHH-HTTCCEEEETTGGGSCHHHHHHHHHHSCTTCE
T ss_pred ccccccccccccccccccccccccCccccccCHHHHHHHHHHHHHHH-hcCCCEEEeccccccchhHHHHHHhhhhcccc
Confidence 01000 0001123589999999999999999999999 67999999999999999999999999876 67
Q ss_pred EEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc---hhhhhhhcCCCCCcccccCCc
Q 015125 215 SVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVMGWWPSR 291 (413)
Q Consensus 215 ~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~p~~ 291 (413)
++||+|.... .+. ...+.+++++.+...+...+..+ ...+..............+..
T Consensus 434 ~~gE~~~~~~------------------~~~--~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (645)
T 4aef_A 434 LIGEVMDDAR------------------LWL--FDKFHGVMNYRLYDAILRFFGYEEITAEEFLNELELLSSYYGPAEYL 493 (645)
T ss_dssp EEECCCSCCG------------------GGT--TTTCSEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHGGGGGG
T ss_pred ccccccccch------------------hhh--ccccceecchhHHHHHHHhhhccccchHHHHHHHHHHhhhccccccc
Confidence 8999997521 111 12456788888877777765321 111211110000011112335
Q ss_pred ceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC-----------------C-----chhHHHHHHH
Q 015125 292 AVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD-----------------W-----GDSIHNQIVK 349 (413)
Q Consensus 292 ~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g-----------------w-----~~~l~~~i~~ 349 (413)
+++|++|||++|+.+.++ +..++++|++++||+||+|+||||||+| | ++++++++|+
T Consensus 494 ~~~fl~nHD~~R~~s~~g-d~~~~~~a~a~llt~pG~P~iyyGdE~G~~~~~~~~~~~~R~pm~W~~~~~~~~l~~~~r~ 572 (645)
T 4aef_A 494 MYNFLDNHDVERFLDIVG-DKRKYVCALVFLMTYKGIPSLFYGDEIGLRGINLQGMESSRAPMLWNEEEWDQRILEITKT 572 (645)
T ss_dssp CBCCSCCTTSCCHHHHHC-CHHHHHHHHHHHHHSSSBCEEETTGGGTCCCEEETTEEESCCCCCCCGGGSCHHHHHHHHH
T ss_pred cccccCCCCCcccccccC-CHHHHHHHHHHHHHcCCCcEEECChhhCCCCCCCCCCccccCCCCCCCccccHHHHHHHHH
Confidence 679999999999988776 6778999999999999999999999986 3 2479999999
Q ss_pred HHHHHHhCcccCCCCeEEEEecCCEEEEEE---CCEEEEEEcCCCC
Q 015125 350 LMDVRRQQDIHSRSSIKILEAQSNLYSAII---GDKVCMKIGDGSW 392 (413)
Q Consensus 350 L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r---~~~~lv~lnn~~~ 392 (413)
|++||+++|+|+.|+++.+..++++++|.| +++++|++|+++.
T Consensus 573 Li~lRk~~paL~~G~~~~~~~~~~v~af~R~~~~~~~lVv~N~s~~ 618 (645)
T 4aef_A 573 LVKIRKNNKALLFGNFVPVKFKRKFMVYKREHMGERTIVAINYSNS 618 (645)
T ss_dssp HHHHHHTCHHHHHCEEEEEEEETTEEEEEEEETTEEEEEEEECSSS
T ss_pred HHHHHhcCHHHhcCceEEEEcCCCEEEEEEEeCCCEEEEEEECCCC
Confidence 999999999999999999999999999998 5678899998653
|
| >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-64 Score=514.21 Aligned_cols=370 Identities=19% Similarity=0.273 Sum_probs=274.8
Q ss_pred cccccCCceeEEEeeecCCCCC-----------------ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--------CCC
Q 015125 18 GAVIRNGREILFQGFNWESCKH-----------------DWWRNLERKVPDISKSGFTSVWLPPATHSF--------APE 72 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~~-----------------g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--------~~~ 72 (413)
+|.+++ .+|||+|.+.|++. |+|+||+++|+|||+||||+|||+||+++. ++|
T Consensus 3 ~~~w~~--~viYqi~~~~F~~~~~~~~~~~~~~~~~~~gG~~~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~~~~~~~~~ 80 (484)
T 2aaa_A 3 AASWRT--QSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYH 80 (484)
T ss_dssp HHHHTT--CCEEECCHHHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTT
T ss_pred hhhhcc--CcEEEEeCccccCCCCCCCCCCCccccccCCCCHHHHHHHHHHHHhcCCCEEEeCccccCcccccccCCCCC
Confidence 455654 58999999976541 899999999999999999999999999864 579
Q ss_pred CCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCC--CCCCCCCCCe-eccCCCC-
Q 015125 73 GYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG--IPLSWDEHAV-TSCTGGL- 148 (413)
Q Consensus 73 gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~--~~~~~~~~~~-~~~~~~~- 148 (413)
||+|.|||+|+|+|||++||++||++||++||+||||+|+||++.+++.....|..|.+ ....|++.+. ..+.+..
T Consensus 81 GY~~~dy~~id~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (484)
T 2aaa_A 81 GYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTM 160 (484)
T ss_dssp SCSEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCBSSCGGGCCGGGSBSCCSGGGBCCCCBCCCTTCHHH
T ss_pred CcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECcCCcCCCCCCCcccccccccCCcccccCCCCCcccCCCCcc
Confidence 99999999999999999999999999999999999999999999977632222322221 0112332211 1111110
Q ss_pred -CCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCCCeEEEcccCCCCCCC
Q 015125 149 -GNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNS 227 (413)
Q Consensus 149 -~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~~~~vgE~~~~~~~~~ 227 (413)
..++.+.....+||||++||+||++|++++++|++++||||||+|+|++++.+||++++++ .+.+++||+|...
T Consensus 161 ~~~~w~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~~~~i~~~f~~~~~~~-~~~~~igE~~~~~---- 235 (484)
T 2aaa_A 161 VEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKA-SGVYCVGEIDNGN---- 235 (484)
T ss_dssp HHHSBEECSSSEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTSCGGGHHHHHHH-HTSEEEECCCCSC----
T ss_pred ccccccccCccccCccccCCHHHHHHHHHHHHHHHHhcCCCEEEecccccCCHHHHHHHHhc-CCcEEEecCCCCC----
Confidence 0122222335699999999999999999999999889999999999999999999999887 3578999999752
Q ss_pred CCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhc---cchhhhhhhcCCCCCcccccCCcceecccCCCCCcC
Q 015125 228 HGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK---GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGST 304 (413)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~---g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~ 304 (413)
...+..|.+ ++.++|||+++..+..++. ++...+.+.+......+ ..+...++|++|||++|+
T Consensus 236 ----------~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~f~~nHD~~r~ 301 (484)
T 2aaa_A 236 ----------PASDCPYQK---VLDGVLNYPIYWQLLYAFESSSGSISNLYNMIKSVASDC-SDPTLLGNFIENHDNPRF 301 (484)
T ss_dssp ----------HHHHGGGGG---TSSEEBCHHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHC-SCGGGSEECSCCTTSCCG
T ss_pred ----------hHHHHhhcc---cCCceeccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-CChhhhceeccCCCcccc
Confidence 244445542 4678999999988888875 23334433221000000 123467899999999999
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCeeEEecCcccCCc-------------------hhHHHHHHHHHHHHHhCcccC----
Q 015125 305 QAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWG-------------------DSIHNQIVKLMDVRRQQDIHS---- 361 (413)
Q Consensus 305 ~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~gw~-------------------~~l~~~i~~L~~lR~~~p~l~---- 361 (413)
.+... +..++++|++++|++||+||||||+|+|.. .++++++++|++||+++|+++
T Consensus 302 ~~~~~-~~~~~~~a~a~~l~~~G~P~iy~G~E~g~~~~~d~~~r~~~W~~~~~~~~~l~~~~~~Li~lRk~~~~~~~~~~ 380 (484)
T 2aaa_A 302 AKYTS-DYSQAKNVLSYIFLSDGIPIVYAGEEQHYAGGKVPYNREATWLSGYDTSAELYTWIATTNAIRKLAIAADSAYI 380 (484)
T ss_dssp GGTCC-CHHHHHHHHHHHHHSSSEEEEETTTTTTCCCCTTTTTCCCGGGGTTCTTCHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred ccccC-CHHHHHHHHHHHHhcCCccEEEecccccccCCCCcchhhhccccCCCCchHHHHHHHHHHHHHHhchhhccccc
Confidence 88774 567899999999999999999999998731 358999999999999998764
Q ss_pred CCCeEEEEecCCEEEEEEC---CEEEEEEcC-CCC--C-----C-----CCCCcEEeeeCCceE
Q 015125 362 RSSIKILEAQSNLYSAIIG---DKVCMKIGD-GSW--C-----P-----AGKEWTLATSGHKYA 409 (413)
Q Consensus 362 ~G~~~~~~~~~~~~~~~r~---~~~lv~lnn-~~~--~-----~-----~~~~~~~~~s~~~~~ 409 (413)
.|.++.+..++++++|.|. ++.++|++| +.. . | .+..|++++++..+.
T Consensus 381 ~~~~~~~~~~~~~~af~R~~~~~~~~~v~~N~~~~~~~~~~~l~~~~~~~g~~~~d~l~~~~~~ 444 (484)
T 2aaa_A 381 TYANDAFYTDSNTIAMAKGTSGSQVITVLSNKGSSGSSYTLTLSGSGYTSGTKLIEAYTCTSVT 444 (484)
T ss_dssp TSCCEEEEEETTEEEEEESSTTTCEEEEEECSCTTCCCEEEEECCCCCCTTCEEEETTTTEEEE
T ss_pred ccceeEEEeCCCEEEEEEEcCCCcEEEEEEcCCCCCceEEEeccccccCCCCEEEECCCCCEEE
Confidence 3556777778899999993 345555554 332 1 1 224577777665443
|
| >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-63 Score=521.22 Aligned_cols=358 Identities=17% Similarity=0.288 Sum_probs=275.3
Q ss_pred eeEEEeeecCCCC------------------------CccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCC
Q 015125 26 EILFQGFNWESCK------------------------HDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYS 81 (413)
Q Consensus 26 ~~i~~~f~~~~~~------------------------~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~ 81 (413)
.||||+|.++|++ .|||+||+++|||||+||||+|||+||++++++|||+|.|||+
T Consensus 135 ~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~~~G~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~ 214 (588)
T 1j0h_A 135 TVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFE 214 (588)
T ss_dssp CCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEE
T ss_pred cEEEEEcchhhcCCCCCcCcccccccCCCCCcccccCCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCcCccccCc
Confidence 6999999877642 2699999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCC--------CCcccccCCCCCCCCCCCeeccCCCCCCCcC
Q 015125 82 LNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGH--------GGKYNRYDGIPLSWDEHAVTSCTGGLGNGST 153 (413)
Q Consensus 82 id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~--------~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (413)
|+|+|||++||++||++||++||+||||+|+||++.+++++ .+.|.+|- .|...+. +..+......
T Consensus 215 idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~dwy----~~~~~~~--~~~~~~~y~~ 288 (588)
T 1j0h_A 215 VDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWF----HIHEFPL--QTEPRPNYDT 288 (588)
T ss_dssp ECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHHHHHHHHGGGCTTGGGB----CBSSSSC--CCSSSCSBCB
T ss_pred cCccCCCHHHHHHHHHHHHHCCCEEEEEECcCcCcccchhHHHHHhcCCCCCccccc----ccccCCC--CCCCCCCeEE
Confidence 99999999999999999999999999999999999988642 23332221 1111110 0000011111
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC---C-CeEEEcccCCCCCCCCC
Q 015125 154 GDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHG 229 (413)
Q Consensus 154 ~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~ 229 (413)
......+|+||++||+||++|++++++|++++||||||+|+|++++.+||+++.++++ | .+++||+|...
T Consensus 289 ~~~~~~~pdLn~~np~Vr~~l~~~~~~Wl~~~giDGfR~D~a~~~~~~f~~~~~~~v~~~~p~~~~igE~~~~~------ 362 (588)
T 1j0h_A 289 FAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALKPDVYILGEIWHDA------ 362 (588)
T ss_dssp STTCTTSBBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCSSCC------
T ss_pred ecCCCCccccccCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCCCeEEEEEecCch------
Confidence 1223679999999999999999999999999999999999999999999999988764 4 78999999652
Q ss_pred CCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhc-cc--hhhhhhhcCCCCCccc-ccCCcceecccCCCCCcCC
Q 015125 230 LDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK-GQ--FWRLRDAQGKPPGVMG-WWPSRAVTFLDNHDTGSTQ 305 (413)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~-g~--~~~~~~~~~~~~~~~~-~~p~~~v~flenHD~~R~~ 305 (413)
..|+. +.+++++|++.++..+.+.+. +. ...+...+......+. ..+...++|++|||++|+.
T Consensus 363 ------------~~~~~-g~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~nHD~~r~~ 429 (588)
T 1j0h_A 363 ------------MPWLR-GDQFDAVMNYPFTDGVLRFFAKEEISARQFANQMMHVLHSYPNNVNEAAFNLLGSHDTSRIL 429 (588)
T ss_dssp ------------GGGCS-SSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTSCHHHHHTCBCBSCCTTSCCHH
T ss_pred ------------hhhhc-CCCcCEEEChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccchhhhheeecCCCCCchhh
Confidence 12333 345788999998888887763 22 2222221110000000 0112458999999999998
Q ss_pred CCCCCChhHHHHHHHHHhcCCCeeEEecCcccC--------------Cc-----hhHHHHHHHHHHHHHhCcccCCCCeE
Q 015125 306 AHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD--------------WG-----DSIHNQIVKLMDVRRQQDIHSRSSIK 366 (413)
Q Consensus 306 ~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g--------------w~-----~~l~~~i~~L~~lR~~~p~l~~G~~~ 366 (413)
+.++.+..++++|++++||+||+|+||||+|+| |. .++++++|+|++||+++|+|+.|.++
T Consensus 430 ~~~~~~~~~~~~a~~~~~~~pG~P~iy~G~E~g~~~~~dp~~r~~~~W~~~~~~~~l~~~~~~Li~lRk~~~al~~g~~~ 509 (588)
T 1j0h_A 430 TVCGGDIRKVKLLFLFQLTFTGSPCIYYGDEIGMTGGNDPECRKCMVWDPMQQNKELHQHVKQLIALRKQYRSLRRGEIS 509 (588)
T ss_dssp HHTTTCHHHHHHHHHHHHHSSSCCEEETTGGGTCCCCSTTGGGCCCCCCTTTSCHHHHHHHHHHHHHHHHCHHHHHCEEE
T ss_pred hhcCCcHHHHHHHHHHHHhCCCCcEEEeecccCccCCCCccccCCcCCCCCCCcHHHHHHHHHHHHHHhhCHHHcCCcEE
Confidence 877666788999999999999999999999985 43 37999999999999999999999999
Q ss_pred EEEe--cCCEEEEEE---CCEEEEEEcCCCCC-----CC---CCCcEEeeeCCce
Q 015125 367 ILEA--QSNLYSAII---GDKVCMKIGDGSWC-----PA---GKEWTLATSGHKY 408 (413)
Q Consensus 367 ~~~~--~~~~~~~~r---~~~~lv~lnn~~~~-----~~---~~~~~~~~s~~~~ 408 (413)
.+.. ++++++|.| ++.++|++|++... |. ++.|++++++..+
T Consensus 510 ~~~~~~~~~v~a~~R~~~~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~ll~~~~~ 564 (588)
T 1j0h_A 510 FLHADDEMNYLIYKKTDGDETVLVIINRSDQKADIPIPLDARGTWLVNLLTGERF 564 (588)
T ss_dssp EECCSCTTTEEEEEEECSSCEEEEEEECSSSCEEEECCCCCSSEEEEETTTCCEE
T ss_pred EEEECCCCCEEEEEEECCCCEEEEEEECCCCCEEEecCccccCceeEEeccCcee
Confidence 8876 568999998 46889999986532 22 2456666666543
|
| >4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-64 Score=532.08 Aligned_cols=363 Identities=15% Similarity=0.159 Sum_probs=277.3
Q ss_pred cccccCCceeEEEeeecCCCC----------------------CccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCC
Q 015125 18 GAVIRNGREILFQGFNWESCK----------------------HDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYL 75 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~----------------------~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~ 75 (413)
.|.+-++ .||||+|...|++ -|||+||+++|||||+||||+|||+||++++++|||+
T Consensus 219 ~p~W~~~-~viYqI~p~rF~~~~~~n~~~~~~~w~~~~~~~~~gGdl~Gi~~kLdyLk~LGvt~IwL~Pi~~s~~~~GYd 297 (696)
T 4aee_A 219 KPRWYMG-TVYYQIFIDSFDNGDPNNDPPNRIKKTVPREYGYYGGDLAGIMKHIDHLEDLGVETIYLTPIFSSTSYHRYD 297 (696)
T ss_dssp SCCTTSS-CCEEEECGGGTCCCCGGGCCSSCCCCCSSCCSSCCCCCHHHHHTTHHHHHHHTCCEEEECCCEEESSSSCCS
T ss_pred Ccchhhc-CeEEEEehHHhcCCCCCCCccccccccCCcccccCCcCHHHHHHHhHHHHHcCCCEEEECCcccCCCCCCcC
Confidence 4555333 6999999998884 3699999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCC--------CCcccccCCCCCCCCCCCeec----
Q 015125 76 PQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGH--------GGKYNRYDGIPLSWDEHAVTS---- 143 (413)
Q Consensus 76 ~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~--------~~~y~~~~~~~~~~~~~~~~~---- 143 (413)
|.||++|+|+|||+++|++||++||++||+||||+|+||++.+|+++ .+.|..|- .|...+...
T Consensus 298 ~~Dy~~idp~~Gt~~df~~Lv~~aH~~GikVilD~V~NHts~~~~~f~~~~~~~~~s~y~dwy----~~~~~~~~~~~~~ 373 (696)
T 4aee_A 298 TIDYKSIDKYLGTMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNELFVKALREGENSPYWEMF----SFLSPPPKEIVEL 373 (696)
T ss_dssp EEEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECSSEECTTSHHHHHHHHHCTTSTTGGGB----CBCSCCCHHHHHH
T ss_pred cccccccCcccCCHHHHHHHHHHHHHCCCEEEEeccccccCccCHHHHHHHhcCCCCCCCCce----EecCCCCcccccc
Confidence 99999999999999999999999999999999999999999998743 23342221 111110000
Q ss_pred -----cCCCC---------------CCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHH
Q 015125 144 -----CTGGL---------------GNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYV 203 (413)
Q Consensus 144 -----~~~~~---------------~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~ 203 (413)
..+++ ........+..+|+||++||+||++|++++++|+ ++||||||+|+|++++.+||
T Consensus 374 ~~~~~~~~~~~s~~~~~~~~~~~~~~~y~~~~~~~~~pdLN~~np~Vr~~i~~~~~~Wl-~~GvDGfRlDaa~~i~~~f~ 452 (696)
T 4aee_A 374 MLKYIDGEECRSRELYKLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFIDITKFWI-DKGIDGFRIDVAMGIHYSWM 452 (696)
T ss_dssp HHHHHSSSSCCGGGGGGSHHHHHSCCSBCBGGGCTTCEEBCTTCHHHHHHHHHHHHHHH-TTTCCEEEETTGGGSCHHHH
T ss_pred cccccCCCccccccccccccccCCCCceeeecCCCCchhhcCCCHHHHHHHHHHHHHHH-hCCCCEEEEechhhCCHHHH
Confidence 00010 1111223457899999999999999999999999 99999999999999999999
Q ss_pred HHHHHhhC---C-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhcc---chhhhhh
Q 015125 204 KEYIEGAR---P-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG---QFWRLRD 276 (413)
Q Consensus 204 ~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g---~~~~~~~ 276 (413)
+++.++++ | .+++||+ ... .|+. +++++++|+|.+...+...+.+ +...+..
T Consensus 453 ~~~~~~v~~~~p~~~~igE~-~~~-------------------~~l~-~~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~ 511 (696)
T 4aee_A 453 KQYYEYIKNTYPDFLVLGEL-AEN-------------------PRIY-MDYFDSAMNYYLRKAILELLIYKRIDLNEFIS 511 (696)
T ss_dssp HHHHHHHHHHCTTCEEEECC-CSC-------------------GGGT-TTTCSEEBCHHHHHHHHHHHTSCCSCHHHHHH
T ss_pred HHHHHHHHhhCCCcEEEecc-cch-------------------hhhc-CCccceEECcHHHHHHHHHHhcCCCCHHHHHH
Confidence 99988764 4 7789997 221 2332 2457889999998888887732 2222222
Q ss_pred hcCCCCCcccc-cCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC--------------Cc-
Q 015125 277 AQGKPPGVMGW-WPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD--------------WG- 340 (413)
Q Consensus 277 ~~~~~~~~~~~-~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g--------------w~- 340 (413)
.+......+.. ....+++|++|||++|+.+.++.+. ++++|++++||+||+|+||||+|+| |+
T Consensus 512 ~l~~~~~~~~~~~~~~~~nfl~nHD~~R~~s~~~~~~-~~kla~a~llt~pG~P~IYyGdE~G~~~~~dp~~R~~~~W~~ 590 (696)
T 4aee_A 512 RINNVYAYIPHYKALSLYNMLGSHDVPRIKSMVQNNK-LLKLMYVLIFALPGSPVIYYGDEIGLEGGRDPDNRRPMIWDR 590 (696)
T ss_dssp HHHHHHTTSCHHHHHHCEECSCCTTSCCHHHHHCCHH-HHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTTTCCCCCCCG
T ss_pred HHHHHHHhcchhhhhheeEecCCCCCCeehhhcCCcH-HHHHHHHHHHhCCCceEEEecccccccCCCCccccCCcCCCC
Confidence 21100000110 1124689999999999988776444 8999999999999999999999986 43
Q ss_pred ----hhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEE---CCEEEEEEcCCCCC-----C-CCCCcEEeeeCCc
Q 015125 341 ----DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAII---GDKVCMKIGDGSWC-----P-AGKEWTLATSGHK 407 (413)
Q Consensus 341 ----~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r---~~~~lv~lnn~~~~-----~-~~~~~~~~~s~~~ 407 (413)
.++++++|+|++||+++|+|+.|.++.+..++++++|.| +++++|++|++... + .++.|+++++|..
T Consensus 591 ~~~~~~l~~~~k~Li~lRk~~~al~~g~~~~~~~~~~v~af~R~~~~~~~lVv~N~s~~~~~v~l~~~~~~~~dllsg~~ 670 (696)
T 4aee_A 591 GNWDLELYEHIKKLIRIYKSCRSMRHGYFLVENLGSNLLFIKRWINNEEIIFLLNVSSKDISVDLKKLGKYSFDIYNEKN 670 (696)
T ss_dssp GGSCHHHHHHHHHHHHHHHHCHHHHSCEEEEEECSTTEEEEEEEETTEEEEEEEECSSSCEECCCC----CCEETTTCCC
T ss_pred CCCchHHHHHHHHHHHHHhhCHHhcCCcEEEEecCCCEEEEEEEcCCCEEEEEEECCCCCEEEEccCCCCeEEEcccCce
Confidence 379999999999999999999999999988889999998 56788888986532 1 2356777776654
Q ss_pred e
Q 015125 408 Y 408 (413)
Q Consensus 408 ~ 408 (413)
+
T Consensus 671 ~ 671 (696)
T 4aee_A 671 I 671 (696)
T ss_dssp -
T ss_pred e
Confidence 3
|
| >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-63 Score=515.34 Aligned_cols=359 Identities=16% Similarity=0.265 Sum_probs=278.5
Q ss_pred eeEEEeeecCCCC------------------------CccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCC
Q 015125 26 EILFQGFNWESCK------------------------HDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYS 81 (413)
Q Consensus 26 ~~i~~~f~~~~~~------------------------~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~ 81 (413)
.||||+|.++|++ .|||+||+++|+|||+||||+|||+||++++++|||+|.|||+
T Consensus 131 ~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~~~Gd~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~ 210 (583)
T 1ea9_C 131 AIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQ 210 (583)
T ss_dssp CCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTHHHHHHHTCSEEEECCCSSCSSSSTTSCSCTTC
T ss_pred ceEEEEchHHhcCCCCccCccccccccCCCCcccccCCcCHHHHHHhhHHHHHcCCCEEEECCCccCCCCCCcCcccccc
Confidence 6899999988742 2699999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCC--------CCcccccCCCCCCCCCCCeeccCCCC-CCCc
Q 015125 82 LNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGH--------GGKYNRYDGIPLSWDEHAVTSCTGGL-GNGS 152 (413)
Q Consensus 82 id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~--------~~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (413)
|+|+|||.++|++||++||++||+||||+|+||++.+++++ .+.|..| ..|...+. +.++. .+..
T Consensus 211 idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~~~----y~~~~~~~--~~~~~~~~y~ 284 (583)
T 1ea9_C 211 IDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDW----FHIRSLPL--EVVDGIPTYD 284 (583)
T ss_dssp CCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTHHHHHHHTTTTTCTTTTS----SCBCSSSC--CCTTSCCSBC
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEEccccCCCccHHHHHHHhcCCCCCccCc----eEecCCCC--CCCCCCCCce
Confidence 99999999999999999999999999999999999988742 2233221 11111110 01110 1111
Q ss_pred CCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC---C-CeEEEcccCCCCCCCC
Q 015125 153 TGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSH 228 (413)
Q Consensus 153 ~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~ 228 (413)
.......+|+||++||+||++|++++++|++++||||||+|++++++.+||+++.++++ | .+++||+|....
T Consensus 285 ~~~~~~~~pdln~~~p~Vr~~l~~~~~~W~~~~gvDGfR~D~~~~~~~~f~~~~~~~v~~~~p~~~~igE~~~~~~---- 360 (583)
T 1ea9_C 285 TFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFRRVVKQANPDAYILGEVWHESS---- 360 (583)
T ss_dssp BSSSCTTSBBCCTTSHHHHHHHHHHHHHHHHHHCCSEEEETTCTTSCHHHHHHHHHHHHHHCTTCEEEECCCSCCT----
T ss_pred ecCCCCCcceeccCCHHHHHHHHHHHHHHHHhcCceEEEecccccCCHHHHHHHHHHHHhhCCCeEEEEEEcCChH----
Confidence 11234679999999999999999999999999999999999999999999999988764 4 789999996521
Q ss_pred CCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc---hhhhhhhcCCCCCccc-ccCCcceecccCCCCCcC
Q 015125 229 GLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVMG-WWPSRAVTFLDNHDTGST 304 (413)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~---~~~~~~~~~~~~~~~~-~~p~~~v~flenHD~~R~ 304 (413)
.|+. +.+++++|++.++..+.+.+.++ ...+...+......+. ..+..+++|++|||++|+
T Consensus 361 --------------~~~~-~~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~nHD~~r~ 425 (583)
T 1ea9_C 361 --------------IWLE-GDQFDAVMNYPFTNAVLDFFIHQIADAEKFSFMLGKQLAGYPRQASEVMFNLLDSHDTARL 425 (583)
T ss_dssp --------------TTTT-TTSCSEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHTTTTSCHHHHHTCEECSCCTTSCCH
T ss_pred --------------HHhc-CCCcCEEECHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcchhhhhhheeecCCCCchhh
Confidence 2222 23577899999888888877543 2222222211001011 112246899999999999
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC--------------Cc-----hhHHHHHHHHHHHHHhCcccCCCCe
Q 015125 305 QAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD--------------WG-----DSIHNQIVKLMDVRRQQDIHSRSSI 365 (413)
Q Consensus 305 ~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g--------------w~-----~~l~~~i~~L~~lR~~~p~l~~G~~ 365 (413)
.+.++.+..++++|++++||+||+|+||||+|+| |. .++++++|+|++||+++|+|+.|++
T Consensus 426 ~~~~~~~~~~~~la~~~~~~~pG~P~iy~G~E~g~~~~~d~~~r~~~~W~~~~~~~~~~~~~~~Li~lRk~~~al~~g~~ 505 (583)
T 1ea9_C 426 LTQADGDKRKMKLAVLFQFTYFGTPCIYYGDEVGLDGGHDPGCRKCMEWDETKHDKDLFAFYQTVIRLRQAHAALRTGTF 505 (583)
T ss_dssp HHHHCSCHHHHHHHHHHHTTSSSEECCCSSCSSCCCCCSHHHHTCCCCCCTTSCCHHHHHHHHHHHHHHHHCSHHHHCCC
T ss_pred hhhcCCcHHHHHHHHHHHHcCCCCcEEEeccccCccCCCChhhcCCcCCCCCCCcHHHHHHHHHHHHHhhhChHhccCce
Confidence 8877656788999999999999999999999985 43 3699999999999999999999999
Q ss_pred EEEEec--CCEEEEEE---CCEEEEEEcCCCCC-----C-CCCCcEEeeeCCceE
Q 015125 366 KILEAQ--SNLYSAII---GDKVCMKIGDGSWC-----P-AGKEWTLATSGHKYA 409 (413)
Q Consensus 366 ~~~~~~--~~~~~~~r---~~~~lv~lnn~~~~-----~-~~~~~~~~~s~~~~~ 409 (413)
+.+..+ +++++|.| ++.++|++|+++.. | .++.|++++++..+.
T Consensus 506 ~~~~~~~~~~v~af~R~~~~~~~lvv~N~~~~~~~v~lp~~~~~~~~~l~~~~~~ 560 (583)
T 1ea9_C 506 KFLTAEKNSRQIAYLREDDQDTILVVMNNDKAGHTLTLPVRHAQWTHLWQDDVLT 560 (583)
T ss_dssp CCSBCCSSCCEEEEEEECSSCEEEEEEECSSSCEEEEEECCSSSCCEEBSTTCCE
T ss_pred EEEeeCCCCCEEEEEEEcCCCEEEEEEECCCCCEEEEecCCCceEEEeccCCcEE
Confidence 888765 78999998 46899999986532 2 235678888877654
|
| >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-63 Score=514.85 Aligned_cols=340 Identities=15% Similarity=0.275 Sum_probs=267.1
Q ss_pred eeEEEeeecCCCC-------------------------CccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCC
Q 015125 26 EILFQGFNWESCK-------------------------HDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLY 80 (413)
Q Consensus 26 ~~i~~~f~~~~~~-------------------------~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~ 80 (413)
.||||+|.+.|++ .|||+||+++|||||+||||+|||+||++++++|||+|.|||
T Consensus 131 ~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~f~~G~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~ 210 (585)
T 1wzl_A 131 AVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYL 210 (585)
T ss_dssp CCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEE
T ss_pred ceEEEEcchhhcCCCcccccccccccCccCCCcccccCCCCHHHHHHHhHHHHHcCCCEEEECCcccCCCCCCcCccccc
Confidence 6999999988742 269999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCC--------CcccccCCCCCCCCCCCeeccCCCCCCCc
Q 015125 81 SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG--------GKYNRYDGIPLSWDEHAVTSCTGGLGNGS 152 (413)
Q Consensus 81 ~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~--------~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (413)
+|+|+|||++||++||++||++||+||||+|+||++.+++++. +.|..|- .|...+...... ....
T Consensus 211 ~id~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~~~y----~~~~~~~~~~~~--~~y~ 284 (585)
T 1wzl_A 211 AIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWF----FIEDFPVSKTSR--TNYE 284 (585)
T ss_dssp EECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGB----CBSSSSCCCSSC--CSBC
T ss_pred ccCcccCCHHHHHHHHHHHHHCCCEEEEEEcCCcCCCccHHHHHHHhcCCCCCccCce----EecCCCCCCCCC--CCee
Confidence 9999999999999999999999999999999999999887432 2332211 111111000000 1111
Q ss_pred CCC-CCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC---C-CeEEEcccCCCCCCC
Q 015125 153 TGD-NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYWDSCNYNS 227 (413)
Q Consensus 153 ~~~-~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~ 227 (413)
... ....+|+||++||+||++|++++++|+ ++||||||+|++++++.+||+++.++++ | .+++||+|...
T Consensus 285 ~~~~~~~~~pdln~~~~~vr~~l~~~~~~Wl-~~gvDGfR~D~a~~~~~~f~~~~~~~v~~~~p~~~~igE~~~~~---- 359 (585)
T 1wzl_A 285 TFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDA---- 359 (585)
T ss_dssp BSSSSCTTCBBBCTTSHHHHHHHHHHHHHHH-HTTCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCSSCC----
T ss_pred EcccCCCCCCeeCcCCHHHHHHHHHHHHHHH-hCCCeEEEEeccccCCHHHHHHHHHHHHHHCCCEEEEEEecCch----
Confidence 111 346799999999999999999999999 9999999999999999999999988764 4 78999999652
Q ss_pred CCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc---hhhhhhhcCCCCCccc-ccCCcceecccCCCCCc
Q 015125 228 HGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVMG-WWPSRAVTFLDNHDTGS 303 (413)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~---~~~~~~~~~~~~~~~~-~~p~~~v~flenHD~~R 303 (413)
..|+. +.+++++|++.+...+.+.+.++ ...+...+......+. ..+..+++|++|||++|
T Consensus 360 --------------~~~~~-~~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~nHD~~r 424 (585)
T 1wzl_A 360 --------------SGWLM-GDQFDSVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTER 424 (585)
T ss_dssp --------------GGGCS-SSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHTTSCHHHHTTCEEESCCTTSCC
T ss_pred --------------HHHhc-CCCcCEEECHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcchhhhccceEecCCCCchh
Confidence 12332 24577899999888888877543 2222221110000011 11235689999999999
Q ss_pred CCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC--------------Cc-----hhHHHHHHHHHHHHHhCcccCCCC
Q 015125 304 TQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD--------------WG-----DSIHNQIVKLMDVRRQQDIHSRSS 364 (413)
Q Consensus 304 ~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g--------------w~-----~~l~~~i~~L~~lR~~~p~l~~G~ 364 (413)
+.+.++.+..++++|++++||+||+|+||||+|+| |. .++++++|+|++||+++|+|+.|.
T Consensus 425 ~~~~~~~~~~~~~~a~~~~~~~pG~P~iy~G~E~g~~~~~d~~~r~~~~W~~~~~~~~l~~~~~~Li~lRk~~~al~~g~ 504 (585)
T 1wzl_A 425 FLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAGATDPDCLRPMIWEEKEQNRGLFEFYKELIRLRHRLASLTRGN 504 (585)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCGGGSCHHHHHHHHHHHHHHHHCHHHHHCE
T ss_pred hHHhcCCcHHHHHHHHHHHHhCCCCcEEEeecccCcCCCCCcccccCCCCCCCCCcHHHHHHHHHHHHHHhhCHHHcCCc
Confidence 98877666788999999999999999999999985 43 369999999999999999999999
Q ss_pred eEEEEec--CCEEEEEE---CCEEEEEEcCCC
Q 015125 365 IKILEAQ--SNLYSAII---GDKVCMKIGDGS 391 (413)
Q Consensus 365 ~~~~~~~--~~~~~~~r---~~~~lv~lnn~~ 391 (413)
++.+..+ +++++|.| ++.++|++|++.
T Consensus 505 ~~~~~~~~~~~v~af~R~~~~~~~lvv~N~~~ 536 (585)
T 1wzl_A 505 VRSWHADKQANLYAFVRTVQDQHVGVVLNNRG 536 (585)
T ss_dssp EEEEEEETTTTEEEEEEEETTEEEEEEEECSS
T ss_pred EEEEEeCCCCCEEEEEEEcCCCEEEEEEECCC
Confidence 9998876 78999998 457888999865
|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-63 Score=503.12 Aligned_cols=356 Identities=17% Similarity=0.227 Sum_probs=276.3
Q ss_pred cccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-------CCCCCcccCCCCCCCCCCHH
Q 015125 18 GAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA-------PEGYLPQNLYSLNSSYGSEH 90 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-------~~gY~~~d~~~id~~~Gt~~ 90 (413)
|.-+++ .+|||+|.++|++.|+|+||+++|+|||+||||+|||+||+++++ ++||+|.||++|+|+|||++
T Consensus 7 ~~w~~~--~viYei~~~~f~~~G~~~~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~gY~~~dy~~i~~~~Gt~~ 84 (449)
T 3dhu_A 7 QTQLRN--EMIYSVFVRNYSEAGNFAGVTADLQRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLA 84 (449)
T ss_dssp CGGGGG--CCEEEECHHHHSSSCSHHHHHTTHHHHHHHTCSEEEECCCSCBCSTTCCTTTCCTTSBSCTTSCCGGGCCHH
T ss_pred chhhhc--CEEEEEEhhhhCCCCCHHHHHHhHHHHHHcCCCEEEECCcccccccCCCCCCCCCcCcccccccCcccCCHH
Confidence 444544 699999999999999999999999999999999999999998764 36899999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHH
Q 015125 91 LLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFV 170 (413)
Q Consensus 91 ~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v 170 (413)
||++||++||++||+||+|+|+||++.++++......+|.. .+. +... .....|.++||||++||+|
T Consensus 85 ~~~~lv~~~h~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~-----~~~-------~~~~-~~~~~w~~~~dLn~~np~V 151 (449)
T 3dhu_A 85 DFKALTDRAHELGMKVMLDIVYNHTSPDSVLATEHPEWFYH-----DAD-------GQLT-NKVGDWSDVKDLDYGHHEL 151 (449)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSEECTTSHHHHHCGGGBCB-----CTT-------SCBC-CSSTTCTTCEEBCTTSHHH
T ss_pred HHHHHHHHHHHCCCEEEEEEccCcCcCccchhhcCccceEE-----CCC-------CCcC-CCCCCCCCCCccCCCCHHH
Confidence 99999999999999999999999999977543211111110 000 0000 0112367899999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC---C-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhc
Q 015125 171 RKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWID 246 (413)
Q Consensus 171 r~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (413)
|+++++++++|+ +. |||||+|+|++++++||+++.++++ | .+++||+|... ...++.
T Consensus 152 r~~l~~~l~~w~-~~-vDGfRlDaa~~~~~~f~~~~~~~~~~~~p~~~~~gE~~~~~-----------------~~~~~~ 212 (449)
T 3dhu_A 152 WQYQIDTLLYWS-QF-VDGYRCDVAPLVPLDFWLEARKQVNAKYPETLWLAESAGSG-----------------FIEELR 212 (449)
T ss_dssp HHHHHHHHHHHT-TT-CSEEEETTGGGSCHHHHHHHHHHHHHHSTTCEEEECCCCHH-----------------HHHHHH
T ss_pred HHHHHHHHHHHH-Hh-CCEEEEEChhhCCHHHHHHHHHHHHhhCCCeEEEeccCCch-----------------HHHHHH
Confidence 999999999999 45 9999999999999999999988764 4 67899998631 111111
Q ss_pred cC-----------CCcccccCccchHHHHHHhccc--hhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCChh
Q 015125 247 GT-----------GQLSAAFDFTTKGILQEAVKGQ--FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSN 313 (413)
Q Consensus 247 ~~-----------~~~~~~~df~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~~ 313 (413)
.. ..++.+++|.+...+...+.+. ...+.+.+......+ ..+..+++|++|||++|+.+.+. +..
T Consensus 213 ~~g~~~~~~~~l~~~fd~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~fl~NHD~~R~~~~~~-~~~ 290 (449)
T 3dhu_A 213 SQGYTGLSDSELYQAFDMTYDYDVFGDFKDYWQGRSTVERYVDLLQRQDATF-PGNYVKMRFLENHDNARMMSLMH-SKA 290 (449)
T ss_dssp HTTCCCCCHHHHHTTCSEEEGGGTHHHHHHHHTTSSCHHHHHHHHHHHHTTS-CTTCEEEECSCCTTSCCHHHHCC-SHH
T ss_pred hcCccccccchhhhccCccccHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhc-CCchhheeecccCCccchhhhcC-CHH
Confidence 00 2356778888877776665443 233333221100111 11335689999999999988776 667
Q ss_pred HHHHHHHHHhcCCCeeEEecCcccC--------------Cc--hhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEE
Q 015125 314 HIMEGYAYILMHPGIPSVFYDHFYD--------------WG--DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSA 377 (413)
Q Consensus 314 ~~~la~a~ll~~pGiP~Iy~G~E~g--------------w~--~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~ 377 (413)
++++|++++|++||+|+||||+|+| |. .++.+++++|++||++ |+++.|.++.+..++++++|
T Consensus 291 ~~k~a~a~~lt~pG~P~IyyG~E~g~~~~~d~~~r~~~~W~~~~~~~~~i~~Li~lR~~-~al~~g~~~~~~~~~~~iaf 369 (449)
T 3dhu_A 291 EAVNNLTWIFMQRGIPLIYNGQEFLAEHQPSLFDRDTMVADRHGDVTPLIQKLVTIKQL-PLLRAADYQLAVVEEGIVKI 369 (449)
T ss_dssp HHHHHHHHHHHSSSEEEEETTGGGTCCSCCCSSSCCCCTTCCCCCCHHHHHHHHHHHTS-GGGGCSEEEEEECGGGCEEE
T ss_pred HHHHHHHHHHhCCCCcEEEccEecccCCCCCcccCCCcCCCccchHHHHHHHHHHHhhh-HhccCCceEEEecCCCEEEE
Confidence 8999999999999999999999986 32 3588999999999999 99999999999988899999
Q ss_pred EE---CCEEEEEEcCCCCC------CCCCCcEEeeeCCceEE
Q 015125 378 II---GDKVCMKIGDGSWC------PAGKEWTLATSGHKYAV 410 (413)
Q Consensus 378 ~r---~~~~lv~lnn~~~~------~~~~~~~~~~s~~~~~~ 410 (413)
.| +++++|++|++... ...+.|+++++|..+.+
T Consensus 370 ~R~~~~~~~~vv~N~s~~~~~~~~~lp~g~y~Dvlsg~~~~~ 411 (449)
T 3dhu_A 370 TYRAAGEALTAWIPLKGQVTAVATKLAAGSYQNLLTDGPTEV 411 (449)
T ss_dssp EEEETTEEEEEEECTTCCEEEEECCSCSEEEEETTTTEEEEE
T ss_pred EEEeCCcEEEEEEECCCCceEEEeecCCCeEEEcccCceEEE
Confidence 99 67888999986532 24568999999887765
|
| >1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-63 Score=501.06 Aligned_cols=350 Identities=19% Similarity=0.287 Sum_probs=260.9
Q ss_pred CceeEEEeeecCCCCCccHHHHHhh-hhhHHHcCCCEEEcCCCCCCCCC----CCCCcccCCCCCCCCCCHHHHHHHHHH
Q 015125 24 GREILFQGFNWESCKHDWWRNLERK-VPDISKSGFTSVWLPPATHSFAP----EGYLPQNLYSLNSSYGSEHLLKALLHK 98 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~g~~~gi~~~-L~yLk~lGv~~I~L~Pi~~~~~~----~gY~~~d~~~id~~~Gt~~~~~~Lv~~ 98 (413)
+++||+|+|.|+ |+||+++ |||||+||||+|||+||+++++. |||+|.| |+|+|+|||++|||+||++
T Consensus 1 ~~~~~~q~F~w~------~~gi~~~lldyL~~LGv~~I~l~Pi~~~~~~~~~~~gY~~~~-y~idp~~Gt~~dfk~Lv~~ 73 (448)
T 1g94_A 1 TPTTFVHLFEWN------WQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVS-YELQSRGGNRAQFIDMVNR 73 (448)
T ss_dssp CCCCEEEETTCC------HHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSC-SCSCBTTBCHHHHHHHHHH
T ss_pred CCCEEEEEecCc------HHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCcccccccc-cccCCCCCCHHHHHHHHHH
Confidence 357999999999 9999998 59999999999999999998753 6999997 6999999999999999999
Q ss_pred HHHcCCEEEEEEccccCcCCCCC--CCCcccccCC---CCCCCCCCCeeccCC-CCCCC---cCCCCCCCCCcCCCCCHH
Q 015125 99 MKQHKVRAMADIVINHRVGTTQG--HGGKYNRYDG---IPLSWDEHAVTSCTG-GLGNG---STGDNFHGVPNIDHTQHF 169 (413)
Q Consensus 99 ~h~~Gi~VilD~V~NH~~~~~~~--~~~~y~~~~~---~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~dln~~~~~ 169 (413)
||++||+||||+|+||++.+++. .++.|..+.. .+.+|++.+. ... .|.+. ...+.+..+||||++||+
T Consensus 74 aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~dln~~np~ 151 (448)
T 1g94_A 74 CSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQDFHESCT--INNSDYGNDRYRVQNCELVGLADLDTASNY 151 (448)
T ss_dssp HHHTTCEEEEEEECSEECSSCEEBTTSCEEBTTBCSSCCGGGBCCCCB--CCTTHHHHCHHHHHHSBSTTCEEBCTTSHH
T ss_pred HHHCCCEEEEEEeeccccCCCCCCCCCCCCccccCCCCCHHHcCCCCC--cCccccCCcccccceeeccCCCCcCCCCHH
Confidence 99999999999999999998731 0122321100 1123443210 100 11111 123456789999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC-CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccC
Q 015125 170 VRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR-PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGT 248 (413)
Q Consensus 170 vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~-~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (413)
||++|++++++|+ ++||||||+|+|++++.+||++++++++ +.+++||+|...+ .+ ..+..|..
T Consensus 152 Vr~~i~~~~~~w~-~~gvDGfR~D~~~~i~~~~~~~~~~~~~~~~~~vgE~~~~~~----~~--------~~~~~y~~-- 216 (448)
T 1g94_A 152 VQNTIAAYINDLQ-AIGVKGFRFDASKHVAASDIQSLMAKVNGSPVVFQEVIDQGG----EA--------VGASEYLS-- 216 (448)
T ss_dssp HHHHHHHHHHHHH-HHTCCEEEEETGGGSCHHHHHHHHHTSCSCCEEEECCCCSSC----CS--------SCGGGGGG--
T ss_pred HHHHHHHHHHHHH-hcCCCEEeecccccCCHHHHHHHHHHhccCCeEEEEeecCCC----Cc--------ccHHhhcC--
Confidence 9999999999999 8999999999999999999999999998 4789999997521 11 11223432
Q ss_pred CCcccccCccchHHHHHHhc-cchhhhhhhcCCCCCcccccCCcceecccCCCCCcC--C--CCC-CCChhHHHHHHHHH
Q 015125 249 GQLSAAFDFTTKGILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGST--Q--AHW-PFPSNHIMEGYAYI 322 (413)
Q Consensus 249 ~~~~~~~df~~~~~l~~~~~-g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~--~--~~~-~~~~~~~~la~a~l 322 (413)
..++++|.+...+++++. ++...+.+. .. ......|..+++|++|||++|+ . +.+ ..+..++++|++++
T Consensus 217 --~~~~~~f~~~~~l~~~~~~~~~~~l~~~-~~--~~~~~~~~~~~~f~~nHD~~r~~~~~g~~l~~~~~~~~~la~a~~ 291 (448)
T 1g94_A 217 --TGLVTEFKYSTELGNTFRNGSLAWLSNF-GE--GWGFMPSSSAVVFVDNHDNQRGHGGAGNVITFEDGRLYDLANVFM 291 (448)
T ss_dssp --GSEEECHHHHHHHHHHHHHSCGGGGGGT-TG--GGTCCCGGGEEECSCCTTGGGTSSCCTTSCCGGGTHHHHHHHHHH
T ss_pred --CCceeeccchhhHHHHhcCCCHHHHHHh-hh--hcCCCChhHceEEecCCCCCCCCCCcccccccCCHHHHHHHHHHH
Confidence 246788888878888874 344444432 11 0011235688999999999998 3 222 22457899999999
Q ss_pred hcCC-CeeEEecCcccCCc-------------------------hhHHHHHHHHHHHHHhCcccCCC-CeEEEEec-CCE
Q 015125 323 LMHP-GIPSVFYDHFYDWG-------------------------DSIHNQIVKLMDVRRQQDIHSRS-SIKILEAQ-SNL 374 (413)
Q Consensus 323 l~~p-GiP~Iy~G~E~gw~-------------------------~~l~~~i~~L~~lR~~~p~l~~G-~~~~~~~~-~~~ 374 (413)
||+| |+|+||||+|+|.. .+++++|++|++||+++ ..+ .++.+..+ +++
T Consensus 292 l~~~~G~P~iy~G~E~G~~~~~~~p~~r~~~~~~~~~~~~~w~~~~l~~~~~~Li~lR~~~---~g~~~~~~~~~~~~~~ 368 (448)
T 1g94_A 292 LAYPYGYPKVMSSYDFHGDTDAGGPNVPVHNNGNLECFASNWKCEHRWSYIAGGVDFRNNT---ADNWAVTNWWDNTNNQ 368 (448)
T ss_dssp HHSCSSEEEEEECBCCTTCTTCCCCSSCSEETTEECBSSSSBCCGGGSHHHHHHHHHHHHS---TTCCCCEEEEECSSSE
T ss_pred HhCCCCeeEEEechhccccCCCCCCccccccccCCcccCCCcccccHHHHHHHHHHHHHhc---cCCCceEEEEeCCCCE
Confidence 9999 99999999998531 24779999999999998 223 34544443 689
Q ss_pred EEEEECCEEEEEEcCCCCC--------CCCCCcEEeeeC
Q 015125 375 YSAIIGDKVCMKIGDGSWC--------PAGKEWTLATSG 405 (413)
Q Consensus 375 ~~~~r~~~~lv~lnn~~~~--------~~~~~~~~~~s~ 405 (413)
++|.|.++++|++|++... ...+.|+++++|
T Consensus 369 ~af~R~~~~~v~~N~~~~~~~~~~~~~l~~g~~~d~~~g 407 (448)
T 1g94_A 369 ISFGRGSSGHMAINKEDSTLTATVQTDMASGQYCNVLKG 407 (448)
T ss_dssp EEEECGGGEEEEEECSSSCBCCEEECCSCSEEEECTTTC
T ss_pred EEEEcCCcEEEEEECCCCCeEEEEEcCCCCcEEEEeecC
Confidence 9999977889999996422 123567777765
|
| >1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-62 Score=501.14 Aligned_cols=353 Identities=20% Similarity=0.323 Sum_probs=263.6
Q ss_pred ccccCCceeEEEeeecCCCCCccHHHHHhh-hhhHHHcCCCEEEcCCCCCCCCC------CCCCcccCCCCCCCCCCHHH
Q 015125 19 AVIRNGREILFQGFNWESCKHDWWRNLERK-VPDISKSGFTSVWLPPATHSFAP------EGYLPQNLYSLNSSYGSEHL 91 (413)
Q Consensus 19 ~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~-L~yLk~lGv~~I~L~Pi~~~~~~------~gY~~~d~~~id~~~Gt~~~ 91 (413)
|++..+++||+|+|+|+ |+||+++ |+|||+||||+|||+||+++++. |||+|.| |+|+|+|||++|
T Consensus 4 ~~~~~~~~~i~~~F~w~------~~gi~~~~ldyL~~LGv~~I~l~Pi~~~~~~~~~~~~~gYd~~d-y~idp~~Gt~~d 76 (471)
T 1jae_A 4 ANFASGRNSIVHLFEWK------WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVS-YIINTRSGDESA 76 (471)
T ss_dssp CCCCTTCEEEEEETTCC------HHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCC-SCSEETTEEHHH
T ss_pred CCCCCCCCeEEEEecCC------HHHHHHHHHHHHHHcCCCEEEeCccccccCCCCCCccccccccc-ccccCCCCCHHH
Confidence 55667889999999999 9999999 59999999999999999998753 7999999 599999999999
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCC-CCCCcc-----cccCCCC---CCCCCCC-eeccCCCCCCCcCCCCCCCCC
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQ-GHGGKY-----NRYDGIP---LSWDEHA-VTSCTGGLGNGSTGDNFHGVP 161 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~-~~~~~y-----~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 161 (413)
|++||++||++||+||+|+|+||++.++. ...+.+ ..|.+.+ ..|++.+ +..+.++ ....++.+..+|
T Consensus 77 ~~~lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~~i~~~~~~--~~~~~~~~~~~p 154 (471)
T 1jae_A 77 FTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDFHSPCEVNNYQDA--DNVRNCELVGLR 154 (471)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSBCCSSCEEBTTSCEEBTTTTBBTTTTBCGGGBCCCCBCCCTTCH--HHHHHSBBTTBC
T ss_pred HHHHHHHHHHCCCEEEEEEecccccCCCCcCCCCCccCccCCcCCCCCCCHhHcCCCCCccCCCCh--hhccccccCCCC
Confidence 99999999999999999999999999861 111111 1111100 1122211 0111111 012244568899
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCC------------CeEEEcccCCCCCCCCC
Q 015125 162 NIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARP------------IFSVGEYWDSCNYNSHG 229 (413)
Q Consensus 162 dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~------------~~~vgE~~~~~~~~~~~ 229 (413)
|||++||+||++|++++++|+ ++||||||+|+|++++++||+++.++++. .+++||+|..+.
T Consensus 155 dLn~~np~V~~~i~~~~~~w~-~~gvDGfRlDa~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~----- 228 (471)
T 1jae_A 155 DLNQGSDYVRGVLIDYMNHMI-DLGVAGFRVDAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLGG----- 228 (471)
T ss_dssp BBCTTSHHHHHHHHHHHHHHH-HTTCCEEEETTGGGSCHHHHHHHHHTCCCCCGGGTCCTTCCCEEEEECCCCSS-----
T ss_pred ccCcCCHHHHHHHHHHHHHHH-HcCCCEEEeechhcCCHHHHHHHHHHHhhhccccccccCCCceEEEeeecCCC-----
Confidence 999999999999999999999 89999999999999999999999998762 488999997521
Q ss_pred CCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhcc--chhhhhhhcCCCCCcccccCCcceecccCCCCCcCC--
Q 015125 230 LDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG--QFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQ-- 305 (413)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g--~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~-- 305 (413)
... ....| .++.++++|++...+.+++.+ +...+.+. ..... ...+.++++|++|||++|+.
T Consensus 229 -~~~------~~~~y----~~~~~~~~f~~~~~l~~~~~~~~~~~~l~~~-~~~~~--~~~~~~~~~fl~nHD~~R~~g~ 294 (471)
T 1jae_A 229 -EAI------SKNEY----TGFGCVLEFQFGVSLGNAFQGGNQLKNLANW-GPEWG--LLEGLDAVVFVDNHDNQRTGGS 294 (471)
T ss_dssp -SSC------CGGGT----TTSSEEECHHHHHHHHHHHTTTSCGGGGGGC-SGGGT--CCCGGGEEECSCCTTHHHHSCT
T ss_pred -ccc------chhhh----cCCCceeccHHHHHHHHHHhCCCcHHHHHHh-hhhcC--CCChhheeEEeecCCCCCCCCC
Confidence 000 00112 135689999999999998854 33343332 11001 11245789999999999986
Q ss_pred CCCC-CChhHHHHHHHHHhcCC-CeeEEecCcccCCc-----------------------------hhHHHHHHHHHHHH
Q 015125 306 AHWP-FPSNHIMEGYAYILMHP-GIPSVFYDHFYDWG-----------------------------DSIHNQIVKLMDVR 354 (413)
Q Consensus 306 ~~~~-~~~~~~~la~a~ll~~p-GiP~Iy~G~E~gw~-----------------------------~~l~~~i~~L~~lR 354 (413)
+.+. .+..++++|++++||+| |+|+||||+|+|-. .+++++|++|++||
T Consensus 295 ~~~~~~~~~~~~la~a~llt~pyG~P~iy~G~E~g~~~~~~p~~~~~~~~~p~f~~~~~w~~~~~~~~l~~~~~~Li~lR 374 (471)
T 1jae_A 295 QILTYKNPKPYKMAIAFMLAHPYGTTRIMSSFDFTDNDQGPPQDGSGNLISPGINDDNTCSNGYVCEHRWRQVYGMVGFR 374 (471)
T ss_dssp TCCCTTSHHHHHHHHHHHHHSCSSEEEEEECBCCSSTTCCCCBCTTSCBCCCEECTTSCEETTBCCGGGSHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHhCcCCceEEEecceecCCCCCCCccCCCCccccccccCCccccCcccchHHHHHHHHHHHH
Confidence 4443 35678999999999999 99999999997521 13789999999999
Q ss_pred HhCcccCCCCeE-E-EEecCCEEEEEECCEEEEEEcCCCCC--------CCCCCcEEeeeC
Q 015125 355 RQQDIHSRSSIK-I-LEAQSNLYSAIIGDKVCMKIGDGSWC--------PAGKEWTLATSG 405 (413)
Q Consensus 355 ~~~p~l~~G~~~-~-~~~~~~~~~~~r~~~~lv~lnn~~~~--------~~~~~~~~~~s~ 405 (413)
+++ .|... . +..++++++|.|+++++|++|++ .. ..++.|+++++|
T Consensus 375 ~~~----~g~~~~~~~~~~~~~~af~R~~~~~vv~N~~-~~~~~~l~~~~~~g~~~d~l~g 430 (471)
T 1jae_A 375 NAV----EGTQVENWWSNDDNQIAFSRGSQGFVAFTNG-GDLNQNLNTGLPAGTYCDVISG 430 (471)
T ss_dssp HHT----TTCCEEEEEECSSSEEEEEETTTEEEEEESS-SCEEEEEECCCCSEEEECTTTC
T ss_pred Hhc----cCCceEEEEeCCCCEEEEecCCCEEEEEeCC-CcceeeeeccCCCceEEEeecc
Confidence 998 35543 2 33346899999988899999997 32 123567777773
|
| >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-63 Score=504.66 Aligned_cols=369 Identities=19% Similarity=0.275 Sum_probs=270.7
Q ss_pred cccccCCceeEEEeeecCCCC-----C------------ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--------CCC
Q 015125 18 GAVIRNGREILFQGFNWESCK-----H------------DWWRNLERKVPDISKSGFTSVWLPPATHSF--------APE 72 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~-----~------------g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--------~~~ 72 (413)
+|.++. .+|||+|.++|++ . |+|+||+++|+|||+||||+|||+||+++. ++|
T Consensus 3 ~~~w~~--~~iYqi~~~~F~~~~~~~~~~~~~~~~~~~gG~~~gi~~~LdyL~~lGvt~I~l~Pi~~~~~~~~~~~~~~~ 80 (478)
T 2guy_A 3 PADWRS--QSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYH 80 (478)
T ss_dssp HHHHTT--CCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTT
T ss_pred chhhcc--CcEEEEecccccCCCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhcCCCEEEeCCcccCCccccCCCCCCC
Confidence 455654 5899999987643 1 899999999999999999999999999864 579
Q ss_pred CCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCC--CCCCCCCCCe-eccCCCCC
Q 015125 73 GYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG--IPLSWDEHAV-TSCTGGLG 149 (413)
Q Consensus 73 gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~--~~~~~~~~~~-~~~~~~~~ 149 (413)
||++.|||+|+|+|||++||++||++||++||+||||+|+||++.+++.....|..|.+ ....|++.+. ..+.+...
T Consensus 81 GY~~~d~~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (478)
T 2guy_A 81 GYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQ 160 (478)
T ss_dssp SCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCCSGGGBCCSCBCCCTTCHHH
T ss_pred CCCcccccccCccCCCHHHHHHHHHHHHHCCCEEEEEECcccCCCCCCcccccccccCCCCchhhcCCCCcccCCCCCcc
Confidence 99999999999999999999999999999999999999999999977633223322221 0112222211 11111100
Q ss_pred --CCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCCCeEEEcccCCCCCCC
Q 015125 150 --NGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNS 227 (413)
Q Consensus 150 --~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~~~~vgE~~~~~~~~~ 227 (413)
.++.+.....+||||++||+||++|++++++|++++||||||+|+|++++.+||+++.++. +.+++||+|...
T Consensus 161 ~~~~w~g~~~~~~~dln~~~~~V~~~l~~~~~~w~~~~gvDGfR~Da~~~~~~~f~~~~~~~~-~~~~igE~~~~~---- 235 (478)
T 2guy_A 161 VEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAA-GVYCIGEVLDGD---- 235 (478)
T ss_dssp HHHSBEECSSEEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCGGGHHHHHHHH-TSEEEECCCCSC----
T ss_pred cccccccCCCCCCCeeCcCCHHHHHHHHHHHHHHHHhcCCCEEEEeccccCCHHHHHHHHhcC-CceEEeeecCCC----
Confidence 1121222346899999999999999999999998899999999999999999999998873 478999999752
Q ss_pred CCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhc---cchhhhhhhcCCCCCcccccCCcceecccCCCCCcC
Q 015125 228 HGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK---GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGST 304 (413)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~---g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~ 304 (413)
...+..|.+ ++.+++||++...+.+++. ++...+.+.+..... ....+...++|++|||++|+
T Consensus 236 ----------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~f~~nHD~~r~ 301 (478)
T 2guy_A 236 ----------PAYTCPYQN---VMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKS-DCPDSTLLGTFVENHDNPRF 301 (478)
T ss_dssp ----------HHHHGGGGG---TSSEEBCHHHHHHHHHHHSSTTCCHHHHHHHHHHHHH-HSSCGGGSEECSCCTTSCCG
T ss_pred ----------chhHHhhhc---cCccccCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-hCcChhhceeeccCCCCccc
Confidence 234444542 3678999999888888875 223333332210000 00123467899999999999
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCeeEEecCcccCCc-------------------hhHHHHHHHHHHHHHhCcccC----
Q 015125 305 QAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWG-------------------DSIHNQIVKLMDVRRQQDIHS---- 361 (413)
Q Consensus 305 ~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~gw~-------------------~~l~~~i~~L~~lR~~~p~l~---- 361 (413)
.+... +..++++|++++|++||+|+||||+|+|.. .+++++|++|++||++++...
T Consensus 302 ~~~~~-~~~~~~~a~a~~l~~pG~P~iy~G~E~g~~~~~~~~~r~~~W~~~~~~~~~l~~~~~~L~~lR~~~~~~~~~~~ 380 (478)
T 2guy_A 302 ASYTN-DIALAKNVAAFIILNDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASANAIRNYAISKDTGFV 380 (478)
T ss_dssp GGTCC-CHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTTTCCCGGGGTCCTTSHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred ccccC-CHHHHHHHHHHHHcCCCccEEEeehhhccCCCCCccchhhhcccCCCcchHHHHHHHHHHHHHHhhhhcCCccc
Confidence 88764 567889999999999999999999998631 359999999999999875432
Q ss_pred CCCeEEEEecCCEEEEEEC---CEEEEEEcC-CCCC-------C-----CCCCcEEeeeCCce
Q 015125 362 RSSIKILEAQSNLYSAIIG---DKVCMKIGD-GSWC-------P-----AGKEWTLATSGHKY 408 (413)
Q Consensus 362 ~G~~~~~~~~~~~~~~~r~---~~~lv~lnn-~~~~-------~-----~~~~~~~~~s~~~~ 408 (413)
.+.++.+..++++++|.|. ++.+||++| +... + .+..|++++++..+
T Consensus 381 ~~~~~~~~~~~~~~af~R~~~~~~~~vv~~N~~~~~~~~~l~~~~~~~~~g~~~~dll~~~~~ 443 (478)
T 2guy_A 381 TYKNWPIYKDDTTIAMRKGTDGSQIVTILSNKGASGDSYTLSLSGAGYTAGQQLTEVIGCTTV 443 (478)
T ss_dssp TSCCEEEEEETTEEEEEESSTTSCEEEEEECSCTTCCCEEEEECCCCCCTTCEEEETTTTEEE
T ss_pred ccceeEEeeCCeEEEEEEEcCCCcEEEEEECCCCCCceEEEeccCcccCCCCEEEEcccCcEE
Confidence 2345777778899999993 345555555 3210 1 23456777766544
|
| >2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-62 Score=505.72 Aligned_cols=364 Identities=15% Similarity=0.212 Sum_probs=267.1
Q ss_pred eeEEEeeecCCCCC-----ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCKH-----DWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-----g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.||||+|.++|++. |||+||+++|+|||+||||+|||+||+++++ +|||+|.||++|+|+|||.+||++||++|
T Consensus 9 ~viYqi~~~~F~~~~~dg~Gdl~gi~~~Ldyl~~LGv~~I~l~Pi~~~~~~~~GY~~~dy~~idp~~Gt~~df~~lv~~~ 88 (543)
T 2zic_A 9 ATVYQIYPKSFMDTNGDGIGDLKGITSKLDYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADMDNLLTQA 88 (543)
T ss_dssp CCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHH
T ss_pred CeEEEEEcHHhcCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHHHHHHHHH
Confidence 69999999999863 8999999999999999999999999999986 69999999999999999999999999999
Q ss_pred HHcCCEEEEEEccccCcCCCCCCC-------Ccccc---cCCCCCCCCCC---CeeccCCCCCCCcCCCCCCCCCcCCCC
Q 015125 100 KQHKVRAMADIVINHRVGTTQGHG-------GKYNR---YDGIPLSWDEH---AVTSCTGGLGNGSTGDNFHGVPNIDHT 166 (413)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~~-------~~y~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~dln~~ 166 (413)
|++||+||||+|+||++.+|+|+. ++|.. +.+.+.+|... ....+.......+.......+||||++
T Consensus 89 h~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~y~d~y~~~~~p~~~~~~f~~~~w~~~~~~~~~y~~~f~~~~pdLN~~ 168 (543)
T 2zic_A 89 KMRGIKIIMDLVVNHTSDEHAWFIEAREHPDSSERDYYIWCDQPNDLESIFGGSAWQYDDKSDQYYLHFFSKKQPDLNWE 168 (543)
T ss_dssp HTTTCEEEEEECCSBCCTTSHHHHHHHHCTTSGGGGGBCEESSCCSCBCTTSSBSEEEETTTTEEEECSSCTTSCBBCTT
T ss_pred HHCCCEEEEEEecCcccccchhhHhhhcCCCCCCcceeecCCCCCcccccCCCCCCcccCCCCcEEECcccCCCCccCcC
Confidence 999999999999999999987542 23321 11111222110 000000000111112234679999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcH--------------HHHHHHHHhhC---CCeEEEcccCCCCCCCCC
Q 015125 167 QHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA--------------KYVKEYIEGAR---PIFSVGEYWDSCNYNSHG 229 (413)
Q Consensus 167 ~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~--------------~~~~~~~~~~~---~~~~vgE~~~~~~~~~~~ 229 (413)
||+||++|++++++|+ ++||||||+|+|++++. ++|+++.++++ +.++|||+|...
T Consensus 169 np~Vr~~i~~~~~~Wl-~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~vgE~~~~~------ 241 (543)
T 2zic_A 169 NANLRQKIYDMMNFWI-DKGIGGFRMDVIDMIGKIPAQHIVSNGPKLHAYLKEMNAASFGQHDLLTVGETWGAT------ 241 (543)
T ss_dssp CHHHHHHHHHHHHHHH-TTTCCEEEETTGGGTTCBGGGTBCSSCTTHHHHHHHHHHHTGGGSCCEEEEECTTCC------
T ss_pred CHHHHHHHHHHHHHHH-hcCCCEEEECCccceeecCCCccccccHHHHHHHHHHHHHHhccCCeEEEeeecCCC------
Confidence 9999999999999999 69999999999999875 89999987764 378999999652
Q ss_pred CCCccchhhHhHhhhhcc-CCCcccccCccchHHHHHHh-cc---------chhhhhhhcCCCCCcccccCCcceecccC
Q 015125 230 LDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQEAV-KG---------QFWRLRDAQGKPPGVMGWWPSRAVTFLDN 298 (413)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~-~~~~~~~~df~~~~~l~~~~-~g---------~~~~~~~~~~~~~~~~~~~p~~~v~flen 298 (413)
...+..|+.. ..+++++|+|.+.. .... .+ +...+...+......+...+...++|++|
T Consensus 242 --------~~~~~~y~~~~~~~~~~~~~f~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~f~~n 311 (543)
T 2zic_A 242 --------PEIAKQYSNPVNHELSMVFQFEHIG--LQHKPEAPKWDYVKELNVPALKTIFNKWQTELELGQGWNSLFWNN 311 (543)
T ss_dssp --------HHHHHHHHCGGGCSCSEEECCTTGG--GGBCTTSCTTSBCSSCCHHHHHHHHHHHHHHSCTTTCCCEECSCC
T ss_pred --------HHHHHHHhCCCCCccceEecchhhc--cccccccccccccCCCCHHHHHHHHHHHHHhcccCCCeeeeeecC
Confidence 3456677764 24678889887642 1111 11 11222221110000000013356799999
Q ss_pred CCCCcCCCCCCCCh----hHHHHHHHHHhcCCCeeEEecCcccCCc----------------------------------
Q 015125 299 HDTGSTQAHWPFPS----NHIMEGYAYILMHPGIPSVFYDHFYDWG---------------------------------- 340 (413)
Q Consensus 299 HD~~R~~~~~~~~~----~~~~la~a~ll~~pGiP~Iy~G~E~gw~---------------------------------- 340 (413)
||++|+.+.++.+. .++++|++++||+||+|+||||+|+|..
T Consensus 312 HD~~R~~~~~~~~~~~~~~~~k~a~~~llt~pG~P~iy~G~E~G~~~~~~~~~~~~~D~~~~n~~~~~~~~g~~~~~~~~ 391 (543)
T 2zic_A 312 HDLPRVLSIWGNTGKYREKSAKALAILLHLMRGTPYIYQGEEIGMTNYPFKDLNELDDIESLNYAKEAFTNGKSMETIMD 391 (543)
T ss_dssp TTSCCHHHHTSCSSTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCCCSSTTCCCHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCccchhhcCCchhhhHHHHHHHHHHHHhCCCceEEEeccccCCCCCCCCCHHHcCCHHHhhhHHHHHhcCCCHHHHHH
Confidence 99999887665332 2689999999999999999999997621
Q ss_pred --------------------------------------------------hhHHHHHHHHHHHHHhCcccCCCCeEEEEe
Q 015125 341 --------------------------------------------------DSIHNQIVKLMDVRRQQDIHSRSSIKILEA 370 (413)
Q Consensus 341 --------------------------------------------------~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~ 370 (413)
.+++.++|+|++||+++|+|+.|+++.+..
T Consensus 392 ~~~~~~rd~~R~pm~W~~~~~agFs~~~~pwl~~~~~y~~~nv~~q~~~~~s~~~~~~~Li~lRk~~~al~~G~~~~~~~ 471 (543)
T 2zic_A 392 SIRMIGRDNARTPMQWDASQNAGFSTADKTWLPVNPNYKDINVQAALKNSNSIFYTYQQLIQLRKENDWLVDADFELLPT 471 (543)
T ss_dssp HHHHHCGGGGCSCCCCCSSGGGGTCSSSSCSSCCCGGGGTSCHHHHHHSTTSHHHHHHHHHHHHHHCTHHHHCCCEECCC
T ss_pred HHHhhCCCCCcCCcccCCCCCCCCCCCCCCCcCCCCCcCccCHHHHHhchhhHHHHHHHHHHHHhcChhhhcCceEEecC
Confidence 248899999999999999999999998855
Q ss_pred cCCEEEEEE---CCEEEEEEcCCCCC----CCCCCcEEeeeCC
Q 015125 371 QSNLYSAII---GDKVCMKIGDGSWC----PAGKEWTLATSGH 406 (413)
Q Consensus 371 ~~~~~~~~r---~~~~lv~lnn~~~~----~~~~~~~~~~s~~ 406 (413)
++++++|.| ++.++|++|.+... ......++++++.
T Consensus 472 ~~~v~a~~R~~~~~~~lvv~N~s~~~~~~~l~~~~~~~l~~~~ 514 (543)
T 2zic_A 472 ADKVFAYLRKVREERYLIVVNVSDQEEVLEIDVDKQETLISNT 514 (543)
T ss_dssp CTTEEEEEEEETTEEEEEEEECSSSCEECCCCCCEEEEEEESS
T ss_pred CCcEEEEEEEeCCcEEEEEEECCCCCEEEecCCCcceEEEecC
Confidence 568999999 45788889886532 1212235666654
|
| >3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-61 Score=501.51 Aligned_cols=365 Identities=24% Similarity=0.499 Sum_probs=266.8
Q ss_pred cccccCCceeEEEeeecC-----CC-----CCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC---CCCCCcccCCC---
Q 015125 18 GAVIRNGREILFQGFNWE-----SC-----KHDWWRNLERKVPDISKSGFTSVWLPPATHSFA---PEGYLPQNLYS--- 81 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~-----~~-----~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~---~~gY~~~d~~~--- 81 (413)
.|.+.. +.||||+|.|+ |+ ..|+|+||+++|+|||+||||+|||+||+++.+ +|||++.|||+
T Consensus 116 ~p~w~~-~~viyq~F~w~~~~~~f~~~~~~~gG~~~gi~~~LdyLk~LGvtaIwL~Pi~~~~s~~~~~GYd~~dy~~l~e 194 (599)
T 3bc9_A 116 IPDQEV-NHTILQAFYWEMNTGEYATEHPEEANLWNLLAERAPELAEAGFTAVWLPPANKGMAGIHDVGYGTYDLWDLGE 194 (599)
T ss_dssp CCGGGC-CCCEEECCCTTTTSHHHHHHCGGGGGHHHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSCSEEETTCSSC
T ss_pred Cchhhc-CceEEEEeeccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCChhhcccccc
Confidence 445533 37999999998 32 237999999999999999999999999999664 59999999996
Q ss_pred ------CCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC--CCCCCCC-------cc------cc--cCCC-----C
Q 015125 82 ------LNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG--TTQGHGG-------KY------NR--YDGI-----P 133 (413)
Q Consensus 82 ------id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~--~~~~~~~-------~y------~~--~~~~-----~ 133 (413)
|+|+|||++||++||++||++||+||||+|+||++. .++|+.. .+ .. |.+. .
T Consensus 195 ~~q~g~idp~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NH~~~~~~~~wf~~~~~~~~~~~~~~~~w~~~~~pg~~~~Y~~ 274 (599)
T 3bc9_A 195 FDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKAWTGFNFPGRNGEYSN 274 (599)
T ss_dssp SCBTTBSSBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEBCTTCSSSTTCEEEEEEEBCCTTTTTSSCC
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCCCCcCCccccccccCCCCCcccccccccccCCCCCCCCcc
Confidence 999999999999999999999999999999999975 2333210 00 00 0000 0
Q ss_pred CCCCCCCee--cc-------------CCCCCC-CcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCC
Q 015125 134 LSWDEHAVT--SC-------------TGGLGN-GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARG 197 (413)
Q Consensus 134 ~~~~~~~~~--~~-------------~~~~~~-~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~ 197 (413)
..|+..++. .+ ...|.. +..++.+..+||||++||+||++|++++++|++++||||||+|+|++
T Consensus 275 ~~~~w~~f~g~d~~~~~~~~~~f~~~~~~W~~~~~~~~~~~~~pdLn~~np~Vr~~l~~~l~~Wl~e~GVDGfRlDaa~~ 354 (599)
T 3bc9_A 275 FTWNGQCFDGTDWDDYSKESGKYLFDEKSWDWTYNWDEDYLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKH 354 (599)
T ss_dssp CCBCGGGEEEEEEETTTTEEEEEEBTTCCCCCCSSTTCSCCSSEEECTTCHHHHHHHHHHHHHHHHTTCCCEEEETTGGG
T ss_pred CccccccCCCCCCccccccccccccCCCCcccccCCccccccCCCcCCCCHHHHHHHHHHHHHHHHcCCCCEEEeccccc
Confidence 001111110 00 112221 01234456789999999999999999999999889999999999999
Q ss_pred CcHHHHHHHHHhhC----C-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCC-CcccccCccchHHHHHHhccch
Q 015125 198 YSAKYVKEYIEGAR----P-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTG-QLSAAFDFTTKGILQEAVKGQF 271 (413)
Q Consensus 198 i~~~~~~~~~~~~~----~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~df~~~~~l~~~~~g~~ 271 (413)
++.+||++++++++ + .+++||+|... ...+..|+...+ ++.++|||++...+++++.+.
T Consensus 355 i~~~f~~~~~~~l~~~~~p~~~~igE~~~~~--------------~~~~~~y~~~~~~~~~~~fdf~~~~~~~~~~~g~- 419 (599)
T 3bc9_A 355 IDYRFIDKWMSAVQNSSNRDVFFVGEAWVED--------------VDDLKGFLDTVGNPDLRVFDFPLRSFFVDMLNGA- 419 (599)
T ss_dssp SCHHHHHHHHHHHHHTCSSCCEEEECCCCCS--------------HHHHHHHHHHHCCTTEEEECHHHHHHHHHHTTCC-
T ss_pred CCHHHHHHHHHHHHHhhCCCeEEEEcccCCC--------------HHHHHHHhcccCCccceecChHHHHHHHHHhcch-
Confidence 99999999988753 3 78999999752 355667776533 367899999988888887653
Q ss_pred hhhhhhcCCCCCccc--ccCCcceecccCCCCCcCCCCCCCCh-hHHHHHHHHHh-cCCCeeEEecCcccCCchhHHHHH
Q 015125 272 WRLRDAQGKPPGVMG--WWPSRAVTFLDNHDTGSTQAHWPFPS-NHIMEGYAYIL-MHPGIPSVFYDHFYDWGDSIHNQI 347 (413)
Q Consensus 272 ~~~~~~~~~~~~~~~--~~p~~~v~flenHD~~R~~~~~~~~~-~~~~la~a~ll-~~pGiP~Iy~G~E~gw~~~l~~~i 347 (413)
.+...... .+.. ..|.++++|++|||++|+.+...... .+.++|+|+++ ++||+|+||||+|+|.+ +..++
T Consensus 420 -~l~~~~~~--~~~~~~~~p~~~v~fl~NHD~~R~~s~~~~~~~~~~~lA~a~ll~t~pG~P~IyyG~E~G~~--~~~~~ 494 (599)
T 3bc9_A 420 -YMADLRNA--GLVNSPGYENRAVTFVDNHDTDRDEGSYTVSIYSRKYQAYAYILTRAEGVPTVYWKDYYIWE--MKEGL 494 (599)
T ss_dssp -CGGGGGSC--SGGGSTTTGGGEEECSCCTTTSCSSSCSSCCCCSSHHHHHHHHHHCSSSEEEEEHHHHHTSC--CHHHH
T ss_pred -hHHHHHHH--HHhhccCCchhheeEecCCCCCccccccccHhHHHHHHHHHHHHHcCCCceEEEechhhCCc--hHHHH
Confidence 23322221 1111 12567899999999999987633221 35889999876 67999999999999984 67899
Q ss_pred HHHHHHHHhCcccCCCCeEEEE-ecCCEEEEEE--CC-----EEEEEEcC-CCC---C------CCCCCcEEeeeCC
Q 015125 348 VKLMDVRRQQDIHSRSSIKILE-AQSNLYSAII--GD-----KVCMKIGD-GSW---C------PAGKEWTLATSGH 406 (413)
Q Consensus 348 ~~L~~lR~~~p~l~~G~~~~~~-~~~~~~~~~r--~~-----~~lv~lnn-~~~---~------~~~~~~~~~~s~~ 406 (413)
++|++||+++ ..|.++.+. .++++++|.| ++ ..++|++| +.. . ..++.|++++++.
T Consensus 495 ~~Li~lRk~~---~~G~~~~~~~~~~~v~af~R~~~~~~~~~~~vvvi~N~~~~~~~~~~v~~~~~~g~~~dll~~~ 568 (599)
T 3bc9_A 495 DKLLTARRYY---AYGPGYEVDNNDADIYSYVRSGFPDVAGDGLVLMISDGTSGNVAGKWINSRQPDTEFYDLTGHI 568 (599)
T ss_dssp HHHHHHHHHT---CCSCEEECSCCCSSEEEEEECCCTTSTTCCEEEEEECCCSCCEEEEEEECSCTTCEEEETTSCS
T ss_pred HHHHHHHHHh---ccCCeEEEEeCCCCEEEEEEECCCCccCCCEEEEEEeCCCCCceeEEEEecCCCCEEEEccCCC
Confidence 9999999997 578888776 5678999999 22 25555544 332 1 1346778877763
|
| >1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-61 Score=501.47 Aligned_cols=363 Identities=19% Similarity=0.251 Sum_probs=264.0
Q ss_pred eeEEEeeecCCCCC-----ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCKH-----DWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-----g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.||||+|.++|++. |||+||+++|+|||+||||+|||+||++++. +|||+|.||++|+|+|||.+||++||++|
T Consensus 23 ~viYqi~~~~F~d~~~dg~Gdl~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~a 102 (570)
T 1m53_A 23 AVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEM 102 (570)
T ss_dssp CCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHH
T ss_pred CcEEEEechhhccCCCCCccCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHHHHHHHHH
Confidence 69999999999874 8999999999999999999999999999986 69999999999999999999999999999
Q ss_pred HHcCCEEEEEEccccCcCCCCCC-------CCcc---cccCCC-----CCCCCCCC---eeccCCCCCCCcCCCCCCCCC
Q 015125 100 KQHKVRAMADIVINHRVGTTQGH-------GGKY---NRYDGI-----PLSWDEHA---VTSCTGGLGNGSTGDNFHGVP 161 (413)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~-------~~~y---~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 161 (413)
|++||+||||+|+||++.+|+|+ .++| +.|.+. +.+|.... ...+....++.+.......+|
T Consensus 103 H~~Gi~VilD~V~NH~s~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~~~~~f~~~~w~~~~~~~~~y~~~f~~~~p 182 (570)
T 1m53_A 103 KKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQYYLHYFARQQP 182 (570)
T ss_dssp HHTTCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSSCSSCCBCTTSSBSEEECTTTCCEEECSSCTTCC
T ss_pred HHCCCEEEEEEeccccccccHHHHHhhcCCCCCCccceeecCCCCCCCCccccccCCCccccccCCCCcEEECcccCcCC
Confidence 99999999999999999998753 2222 222210 11121100 000000001111112236789
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcH--------------------------HHHHHHHHhhC---C
Q 015125 162 NIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA--------------------------KYVKEYIEGAR---P 212 (413)
Q Consensus 162 dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~--------------------------~~~~~~~~~~~---~ 212 (413)
|||++||+||++|++++++|+ ++||||||+|+|++++. +||+++.++++ +
T Consensus 183 dLN~~np~Vr~~l~~~~~~Wl-~~gvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~ 261 (570)
T 1m53_A 183 DLNWDNPKVREDLYAMLRFWL-DKGVSGMRFDTVATYSKIPGFPNLTPEQQKNFAEQYTMGPNIHRYIQEMNRKVLSRYD 261 (570)
T ss_dssp BBCTTSHHHHHHHHHHHHHHH-TTTCCEEEETTGGGSSCCTTCCCCCHHHHHTHHHHTTCCTTHHHHHHHHHHHTGGGSC
T ss_pred ccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEccccccccccccccCCCcccccccccccCchHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999 69999999999998763 57888887553 4
Q ss_pred CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhcc-CCCcccccCccchHHHHHHhcc--------chhhhhhhcCCCCC
Q 015125 213 IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQEAVKG--------QFWRLRDAQGKPPG 283 (413)
Q Consensus 213 ~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~df~~~~~l~~~~~g--------~~~~~~~~~~~~~~ 283 (413)
.++|||+|... ...+..|+.. +++++++|+|.+... ....+ +...+...+.....
T Consensus 262 ~~~vgE~~~~~--------------~~~~~~y~~~~~~~~~~~~~f~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~ 325 (570)
T 1m53_A 262 VATAGEIFGVP--------------LDRSSQFFDRRRHELNMAFMFDLIRL--DRDSNERWRHKSWSLSQFRQIISKMDV 325 (570)
T ss_dssp CEEEEECTTCC--------------GGGTHHHHCGGGCSCSEEECCTTTTT--TBCSSCTTCBCCCCHHHHHHHHHHHHH
T ss_pred eEEEecccCCC--------------HHHHHHHhcccCcccceeechhhhhc--ccccccccccCCCCHHHHHHHHHHHHH
Confidence 78999999542 2345667653 346778888876421 11011 11122221110000
Q ss_pred cccccCCcceecccCCCCCcCCCCCCCCh-----hHHHHHHHHHhcCCCeeEEecCcccCCc------------------
Q 015125 284 VMGWWPSRAVTFLDNHDTGSTQAHWPFPS-----NHIMEGYAYILMHPGIPSVFYDHFYDWG------------------ 340 (413)
Q Consensus 284 ~~~~~p~~~v~flenHD~~R~~~~~~~~~-----~~~~la~a~ll~~pGiP~Iy~G~E~gw~------------------ 340 (413)
.+ ..+...++|++|||++|+.+.++... .+++++++++||+||+|+||||+|+|..
T Consensus 326 ~~-~~~~~~~~fl~nHD~~R~~~~~~~~~~~~~~~~~k~~~~~llt~pG~P~iy~G~E~G~~~~~~~~~~~~~D~~~~~~ 404 (570)
T 1m53_A 326 TV-GKYGWNTFFLDNHDNPRAVSHFGDDRPQWREASAKALATITLTQRATPFIYQGSELGMTNYPFRQLNEFDDIEVKGF 404 (570)
T ss_dssp HH-TTTCCBEECSCCTTSCCHHHHHSCCSTTTHHHHHHHHHHHHTSSSSEEEEETTTTTTCCCCCCCSGGGCCCHHHHHH
T ss_pred hc-ccCCcccccCCCCCchhhHHhhCCCchhHHHHHHHHHHHHHHhCCCCeEEEechhcCCCCCCCCCHHhccCHHHhcc
Confidence 00 01235679999999999877654332 3589999999999999999999997521
Q ss_pred ------------------------------------------------------------------hhHHHHHHHHHHHH
Q 015125 341 ------------------------------------------------------------------DSIHNQIVKLMDVR 354 (413)
Q Consensus 341 ------------------------------------------------------------------~~l~~~i~~L~~lR 354 (413)
.+++.++|+|++||
T Consensus 405 ~~~~~~~g~~~~~~~~~~~~~~~rd~~R~pm~W~~~~~agFs~~~pwl~~~~~~~~~nv~~q~~~~~s~~~~~~~Li~lR 484 (570)
T 1m53_A 405 WQDYVQSGKVTATEFLDNVRLTSRDNSRTPFQWNDTLNAGFTRGKPWFHINPNYVEINAEREETREDSVLNYYKKMIQLR 484 (570)
T ss_dssp HHHHTTTTSSCHHHHHHHHHHHCGGGGCSCCCCSSSGGGGSCSSCCSSCCCGGGGTSCHHHHHHCTTSHHHHHHHHHHHH
T ss_pred hhhhhhcCCccHHHHhhhhhcccCCCCCCCcccCCCCCCCCcCCCCCCcCCcccccccHHHhhhccchHHHHHHHHHHHH
Confidence 25889999999999
Q ss_pred HhCcccCCCCeEEEE-ecCCEEEEEE---CCEEEEEEcCCCCC-----CCCCC-cEEeeeCC
Q 015125 355 RQQDIHSRSSIKILE-AQSNLYSAII---GDKVCMKIGDGSWC-----PAGKE-WTLATSGH 406 (413)
Q Consensus 355 ~~~p~l~~G~~~~~~-~~~~~~~~~r---~~~~lv~lnn~~~~-----~~~~~-~~~~~s~~ 406 (413)
+++|+|..|+++.+. .++++++|.| +++++|++|.+... +..+. +++++++.
T Consensus 485 ~~~~~l~~G~~~~~~~~~~~v~a~~R~~~~~~~lvv~N~s~~~~~~~l~~~~~~~~~ll~~~ 546 (570)
T 1m53_A 485 HHIPALVYGAYQDLNPQDNTVYAYTRTLGNERYLVVVNFKEYPVRYTLPANDAIEEVVIDTQ 546 (570)
T ss_dssp HHCHHHHHSEEEESCTTCSSEEEEEEEETTEEEEEEEECSSSCEEEECCTTCCEEEEEEESC
T ss_pred cCCchhhccceEEeecCCCCEEEEEEECCCcEEEEEEECCCCCEEEeccCCCccceEEeecC
Confidence 999999999998864 4568999998 45788899986532 22223 57777765
|
| >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-62 Score=517.07 Aligned_cols=355 Identities=15% Similarity=0.280 Sum_probs=267.1
Q ss_pred cccccCCceeEEEeeecCCCCC--------------------------ccHHHHHhhhhhHHHcCCCEEEcCCCCCC---
Q 015125 18 GAVIRNGREILFQGFNWESCKH--------------------------DWWRNLERKVPDISKSGFTSVWLPPATHS--- 68 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~~--------------------------g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~--- 68 (413)
+|.++. .||||+|.++|++. |||+||+++|||||+||||+|||+||+++
T Consensus 3 ~~~~~~--~viYqI~p~~F~d~d~~n~~~~~~~~~~d~~~~~~~~~~gGdl~gi~~kLdyLk~LGv~aIwL~Pi~~~~~~ 80 (686)
T 1qho_A 3 SASVKG--DVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDT 80 (686)
T ss_dssp TSCCTT--CCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHTHHHHHHHTCCEEEECCCEEECSS
T ss_pred cccCcc--CcEEEEeccccCCCCcccCcccccccccCCCccccccccCCCHHHHHHhhHHHHhcCCCEEEECccccCCcc
Confidence 344655 59999999987642 79999999999999999999999999985
Q ss_pred ------CCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCC---CCCCcccccCC------CC
Q 015125 69 ------FAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ---GHGGKYNRYDG------IP 133 (413)
Q Consensus 69 ------~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~---~~~~~y~~~~~------~~ 133 (413)
.++|||+|.|||+|+|+|||++||++||++||++||+||||+|+||++..+. ++......+.+ .+
T Consensus 81 ~~~~g~~~~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~GikVilD~V~NHts~~~~~~~~~~~~g~~~~~g~~~~~~~ 160 (686)
T 1qho_A 81 LAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYF 160 (686)
T ss_dssp CSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEECSS
T ss_pred cccCCCCCcCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccccCccccCCcccccCC
Confidence 3679999999999999999999999999999999999999999999999773 22110000000 00
Q ss_pred -----CCCCCCCeeccCCCCCC--CcCCCCC-----CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHH
Q 015125 134 -----LSWDEHAVTSCTGGLGN--GSTGDNF-----HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAK 201 (413)
Q Consensus 134 -----~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~ 201 (413)
..|+..+- ...|.. ....+.+ .++||||++||+||++|++++++|++ +||||||+|++++++.+
T Consensus 161 ~~~~~~~f~~~~~---i~~w~~~~~~~y~~~~~~~~~~~pDLn~~np~Vr~~l~~~~~~Wl~-~GVDGfRlDa~~~i~~~ 236 (686)
T 1qho_A 161 DDATKGYFHHNGD---ISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVA-HGADGLRIDAVKHFNSG 236 (686)
T ss_dssp SCTTTCCBCCSCB---CSCTTCHHHHHHSBCEETTTEEEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCHH
T ss_pred CCcccCeeecCCC---cCcCCCCcccceeecccCCcCCCCccccCCHHHHHHHHHHHHHHHh-cCCCEEEEeccccCCHH
Confidence 11111110 011110 0011222 45899999999999999999999995 99999999999999999
Q ss_pred HHHHHHHhh---CCCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhcc---chhhhh
Q 015125 202 YVKEYIEGA---RPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG---QFWRLR 275 (413)
Q Consensus 202 ~~~~~~~~~---~~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g---~~~~~~ 275 (413)
||+++.+++ ++.+++||.|.+.+ +.. ....+..|.+.. + .++|||++...+.+++.+ +...+.
T Consensus 237 f~~~~~~~v~~~~~~~~vgE~~~~~~-----~~~----~~~~~~~~~~~~-~-~~~~df~~~~~~~~~~~~~~~~~~~l~ 305 (686)
T 1qho_A 237 FSKSLADKLYQKKDIFLVGEWYGDDP-----GTA----NHLEKVRYANNS-G-VNVLDFDLNTVIRNVFGTFTQTMYDLN 305 (686)
T ss_dssp HHHHHHHHHHHHCCCEEEECCCCCCT-----TST----THHHHHHHHHHS-S-CEEBCHHHHHHHHHHHTSCSSCHHHHH
T ss_pred HHHHHHHHHHhcCCceEEeeeecCCC-----ccc----chhhhhhhcccC-C-CeeeccHHHHHHHHHHhcCCCCHHHHH
Confidence 999998876 46889999886520 000 012444555432 2 467999999888888743 223333
Q ss_pred hhcCCCCCcccccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccCCc---------------
Q 015125 276 DAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWG--------------- 340 (413)
Q Consensus 276 ~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~gw~--------------- 340 (413)
..+......+ ..+...++|++|||++|+.+ +..+..++++|++++|++||+|+||||+|+|..
T Consensus 306 ~~l~~~~~~~-~~~~~~~~fl~NHD~~R~~s-~~~~~~~~~~a~a~llt~pG~P~IYyG~E~g~~~~~d~~~R~~~~~~~ 383 (686)
T 1qho_A 306 NMVNQTGNEY-KYKENLITFIDNHDMSRFLS-VNSNKANLHQALAFILTSRGTPSIYYGTEQYMAGGNDPYNRGMMPAFD 383 (686)
T ss_dssp HHHHHHHHHC-TTGGGCEECSCCTTSCCHHH-HCCCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTTTCCCCCCCC
T ss_pred HHHHHHHHhc-cchhhceeeccCCCCccccc-cCCCHHHHHHHHHHHHcCCCcCEEEecccccccCCCCccccccCCCCC
Confidence 3221000000 12446899999999999887 444567899999999999999999999998631
Q ss_pred --hhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEE---CCEEEEEEcCCC
Q 015125 341 --DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAII---GDKVCMKIGDGS 391 (413)
Q Consensus 341 --~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r---~~~~lv~lnn~~ 391 (413)
.+++++|++|++||+++|+|+.|+++.+..++++++|.| +++++|++|++.
T Consensus 384 ~~~~~~~~~~~Li~lRk~~~al~~G~~~~~~~~~~v~af~R~~~~~~~lV~~N~~~ 439 (686)
T 1qho_A 384 TTTTAFKEVSTLAGLRRNNAAIQYGTTTQRWINNDVYIYERKFFNDVVLVAINRNT 439 (686)
T ss_dssp TTSHHHHHHHHHHHHHHHCHHHHHCEEEEEEECSSEEEEEEEETTEEEEEEEECCT
T ss_pred CCcHHHHHHHHHHHHHhhCHHhhcCceEEEeeCCCEEEEEEECCCcEEEEEEECCC
Confidence 368999999999999999999999999888889999999 567888999863
|
| >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-61 Score=512.15 Aligned_cols=346 Identities=15% Similarity=0.250 Sum_probs=263.9
Q ss_pred eeEEEeeecCCCCC-----------------------ccHHHHHhhhh--hHHHcCCCEEEcCCCCCC-----------C
Q 015125 26 EILFQGFNWESCKH-----------------------DWWRNLERKVP--DISKSGFTSVWLPPATHS-----------F 69 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-----------------------g~~~gi~~~L~--yLk~lGv~~I~L~Pi~~~-----------~ 69 (413)
.||||+|...|++. |||+||+++|| |||+||||+|||+||+++ .
T Consensus 12 ~viYqI~p~rF~d~~~~n~~~~~~~~~~~~~~~~~~gGdl~gi~~kLd~~yLk~LGv~aIwL~Pi~~~~~~~~~~~~g~~ 91 (680)
T 1cyg_A 12 DVVYQIVVDRFVDGNTSNNPSGALFSSGCTNLRKYCGGDWQGIINKINDGYLTDMGVTAIWISQPVENVFSVMNDASGSA 91 (680)
T ss_dssp CCEEEECGGGTCCSCGGGCCCGGGBCGGGCSTTSBCCCCHHHHHHHHHTSTTTTTTCCEEEECCCEEECCCCCSSSSCCC
T ss_pred ceEEEEecccccCCCCCcCCCCcccCCCccccccccCcCHHHHHhhcCHHHHHhCCCCEEEeCccccCccccccccCCCC
Confidence 69999999987652 79999999999 999999999999999985 2
Q ss_pred CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCC---CCCCcccccCC---------C-CCCC
Q 015125 70 APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ---GHGGKYNRYDG---------I-PLSW 136 (413)
Q Consensus 70 ~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~---~~~~~y~~~~~---------~-~~~~ 136 (413)
++|||+|.|||+|+|+|||++||++||++||++||+||||+|+||++..+. ++......+.. . ...|
T Consensus 92 ~~~GY~~~Dy~~idp~~Gt~~df~~Lv~~aH~~GIkVilD~V~NHts~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 171 (680)
T 1cyg_A 92 SYHGYWARDFKKPNPFFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDANMYF 171 (680)
T ss_dssp STTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTCCB
T ss_pred CCCCcCchhccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccccCcchhhcCccccCcccccccCCCchhce
Confidence 579999999999999999999999999999999999999999999999873 22111000100 0 0111
Q ss_pred CCCCeeccCCCCCC--CcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhh---C
Q 015125 137 DEHAVTSCTGGLGN--GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGA---R 211 (413)
Q Consensus 137 ~~~~~~~~~~~~~~--~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~---~ 211 (413)
+..+. ..|.. ....+.+.++||||++||+||++|++++++|+ ++||||||+|++++++.+||+++.+++ +
T Consensus 172 ~~~~~----~~~~~~~~~~y~~~~~~pDLn~~np~Vr~~i~~~~~~Wl-~~GVDGfRlDa~~~i~~~f~~~~~~~v~~~~ 246 (680)
T 1cyg_A 172 HHNGG----TTFSSLEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMWI-DMGIDGIRMDAVKHMPFGWQKSLMDEIDNYR 246 (680)
T ss_dssp CCSCB----CCCSSHHHHHSSBSTTEEEBCTTSHHHHHHHHHHHHHHH-TTTCCEEEESCGGGSCSHHHHHHHHHHHHHC
T ss_pred ecCCC----CCcCCCccccccCcCCCCccccCCHHHHHHHHHHHHHHH-hCCCCEEEEeccccCCHHHHHHHHHHHhhcC
Confidence 11111 11110 01123455799999999999999999999999 599999999999999999999998876 4
Q ss_pred CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhcc---chhhhhhhcCCCCCccccc
Q 015125 212 PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG---QFWRLRDAQGKPPGVMGWW 288 (413)
Q Consensus 212 ~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g---~~~~~~~~~~~~~~~~~~~ 288 (413)
+.+++||.|.+.. .. ......|.+.. + .+++||++...+.+++.+ +...+...+......+ ..
T Consensus 247 ~~~~vgE~~~~~~-----~~------~~~~~~~~~~~-~-~~~~df~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~ 312 (680)
T 1cyg_A 247 PVFTFGEWFLSEN-----EV------DANNHYFANES-G-MSLLDFRFGQKLRQVLRNNSDNWYGFNQMIQDTASAY-DE 312 (680)
T ss_dssp CCEEEECCCCCTT-----CC------CHHHHHHHHHS-S-CEEBCHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHC-TT
T ss_pred CcEEEccCCCCCc-----cc------chhhhhhhccC-C-CceECchHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc-cc
Confidence 6889999886421 10 02233444332 2 367999999888888754 2233333221000000 12
Q ss_pred CCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccCCc-----------------hhHHHHHHHHH
Q 015125 289 PSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWG-----------------DSIHNQIVKLM 351 (413)
Q Consensus 289 p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~gw~-----------------~~l~~~i~~L~ 351 (413)
+...++|++|||++|+.+ ...+..++++|++++|++||+|+||||+|+|.. .+++++|++|+
T Consensus 313 ~~~~~~fl~NHD~~R~~s-~~~~~~~~~~a~a~llt~pG~P~IYyG~E~g~~~~~dp~~R~~m~~~~~~~~~~~~~~~Li 391 (680)
T 1cyg_A 313 VLDQVTFIDNHDMDRFMI-DGGDPRKVDMALAVLLTSRGVPNIYYGTEQYMTGNGDPNNRKMMSSFNKNTRAYQVIQKLS 391 (680)
T ss_dssp GGGCEECSCCTTSCCSCC-TTCCTHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCCSCSHHHHHHHHHH
T ss_pred hhhceEEecCCCcchhcc-cCCCHHHHHHHHHHHHhCCCCCEEEEeecccccCCCCccccccCcCCCCCcHHHHHHHHHH
Confidence 447899999999999988 343567899999999999999999999998632 36899999999
Q ss_pred HHHHhCcccCCCCeEEEEecCCEEEEEE---CCEEEEEEcCCC
Q 015125 352 DVRRQQDIHSRSSIKILEAQSNLYSAII---GDKVCMKIGDGS 391 (413)
Q Consensus 352 ~lR~~~p~l~~G~~~~~~~~~~~~~~~r---~~~~lv~lnn~~ 391 (413)
+||+++|+|+.|+++.+..++++++|.| +++++|++|++.
T Consensus 392 ~lRk~~~al~~G~~~~~~~~~~v~af~R~~~~~~~lV~~N~s~ 434 (680)
T 1cyg_A 392 SLRRNNPALAYGDTEQRWINGDVYVYERQFGKDVVLVAVNRSS 434 (680)
T ss_dssp HHHHHCHHHHHCEEEEEEECSSEEEEEEEETTEEEEEEEECCS
T ss_pred HHHhhCHHHccCceEEEEeCCCEEEEEEEcCCcEEEEEEECCC
Confidence 9999999999999998888889999998 567888898863
|
| >3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-61 Score=512.50 Aligned_cols=345 Identities=15% Similarity=0.275 Sum_probs=264.3
Q ss_pred eeEEEeeecCCCCC-----------------------ccHHHHHhhhh--hHHHcCCCEEEcCCCCCC------------
Q 015125 26 EILFQGFNWESCKH-----------------------DWWRNLERKVP--DISKSGFTSVWLPPATHS------------ 68 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-----------------------g~~~gi~~~L~--yLk~lGv~~I~L~Pi~~~------------ 68 (413)
.||||+|.+.|++. |||+||+++|| |||+||||+|||+||+++
T Consensus 15 ~viYqi~~~~F~d~~~~n~~~~~~~dg~~~~~~~~~gGdl~gi~~kLd~~yLk~LGvtaIwL~Pi~~~~~~~~~~~g~~g 94 (683)
T 3bmv_A 15 DVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLTGMGVTAIWIPQPVENIYAVLPDSTFGG 94 (683)
T ss_dssp CCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHHHHTSTTGGGTCCEEEECCCEEECCCCEEETTTEE
T ss_pred CcEEEEecccccCCCCCCCCCCcccCCCccccccccCcCHHHHHHhcCHHHHHHcCCCEEEeCccccCcccccccccccC
Confidence 69999999988752 79999999999 999999999999999984
Q ss_pred -CCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCC---CCCC---cccc------cCCC-CC
Q 015125 69 -FAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ---GHGG---KYNR------YDGI-PL 134 (413)
Q Consensus 69 -~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~---~~~~---~y~~------~~~~-~~ 134 (413)
.++|||+|.|||+|+|+|||.+||++||++||++||+||||+|+||++..+. ++.. .|.+ +... ..
T Consensus 95 ~~~~~GYd~~dy~~idp~~Gt~~dfk~Lv~~aH~~GikVilD~V~NHts~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 174 (683)
T 3bmv_A 95 STSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNG 174 (683)
T ss_dssp ECSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTC
T ss_pred CCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEcccccccccccCcchhccCccccCCcccccCCCCccc
Confidence 3679999999999999999999999999999999999999999999999873 2210 1100 0000 01
Q ss_pred CCCCCCeeccCCCCCC--CcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC-
Q 015125 135 SWDEHAVTSCTGGLGN--GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR- 211 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~- 211 (413)
.|+..+. ..|.. ....+.+.++||||++||+||++|++++++|++ +||||||+|++++++.+||+++.++++
T Consensus 175 ~f~~~~~----~~w~~~~~~~y~~~~~~pdLn~~np~Vr~~i~~~l~~Wl~-~GVDGfRlDa~~~i~~~f~~~~~~~v~~ 249 (683)
T 3bmv_A 175 YFHHYGG----TDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWLD-MGIDGIRLDAVKHMPFGWQKNFMDSILS 249 (683)
T ss_dssp CBCCSCB----CCCSSHHHHHHSBSTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred ccccCCC----CCcCCcccccccCcCCCCCcccCCHHHHHHHHHHHHHHHh-CCCCEEEEeccccCCHHHHHHHHHHHHh
Confidence 1111110 11110 011233457999999999999999999999995 999999999999999999999988764
Q ss_pred --CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhcc---chhhhhhhcCCCCCccc
Q 015125 212 --PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG---QFWRLRDAQGKPPGVMG 286 (413)
Q Consensus 212 --~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g---~~~~~~~~~~~~~~~~~ 286 (413)
+.+++||.|.... .. ...+..|.+.. + .++|||++...+.+++.+ +...+.+.+......+
T Consensus 250 ~~~~~~vgE~~~~~~-----~~------~~~~~~~~~~~-~-~~~~df~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~- 315 (683)
T 3bmv_A 250 YRPVFTFGEWFLGTN-----EI------DVNNTYFANES-G-MSLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTASDY- 315 (683)
T ss_dssp HSCCEEEECCCCCTT-----CC------CHHHHHHHHHS-S-SEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHC-
T ss_pred cCCceEEccccCCCc-----cc------chhhhhhhccC-C-CceECchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-
Confidence 6889999986521 10 02334454432 2 357999999988888754 2233333221000000
Q ss_pred ccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccCCc-----------------hhHHHHHHH
Q 015125 287 WWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWG-----------------DSIHNQIVK 349 (413)
Q Consensus 287 ~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~gw~-----------------~~l~~~i~~ 349 (413)
..+...++|++|||++|+. ...+..++++|++++|++||+|+||||+|+|.. .+++++||+
T Consensus 316 ~~~~~~~~fl~NHD~~R~~--~~~~~~~~~~a~a~llt~pG~P~IYyG~E~g~~~~~d~~~R~~~~~~~~~~~~~~~~~~ 393 (683)
T 3bmv_A 316 NFINDMVTFIDNHDMDRFY--NGGSTRPVEQALAFTLTSRGVPAIYYGTEQYMTGNGDPYNRAMMTSFNTSTTAYNVIKK 393 (683)
T ss_dssp TTGGGCEECSCCSSSCCSC--CSSCSHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCCTTSHHHHHHHH
T ss_pred cchhhceeeccCCCCcccc--cCCCHHHHHHHHHHHHhCCCCCEEEeeeeecccCCCCccccccCCCccCCcHHHHHHHH
Confidence 1245789999999999988 444567899999999999999999999998632 368999999
Q ss_pred HHHHHHhCcccCCCCeEEEEecCCEEEEEE---CCEEEEEEcCCC
Q 015125 350 LMDVRRQQDIHSRSSIKILEAQSNLYSAII---GDKVCMKIGDGS 391 (413)
Q Consensus 350 L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r---~~~~lv~lnn~~ 391 (413)
|++||+++|+|+.|+++.+..++++++|.| ++.++|++|++.
T Consensus 394 Li~lRk~~~al~~G~~~~~~~~~~v~af~R~~~~~~~lV~~N~~~ 438 (683)
T 3bmv_A 394 LAPLRKSNPAIAYGTTQQRWINNDVYIYERKFGNNVALVAINRNL 438 (683)
T ss_dssp HTTHHHHCHHHHHCEEEEEEECSSEEEEEEEETTEEEEEEEECCS
T ss_pred HHHHHhhCHHhhcCcEEEEeeCCCEEEEEEEcCCeEEEEEEECCC
Confidence 999999999999999998888889999999 567888999863
|
| >3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-61 Score=507.95 Aligned_cols=347 Identities=15% Similarity=0.227 Sum_probs=263.9
Q ss_pred eeEEEeeecCCCCC-----ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCKH-----DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-----g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h 100 (413)
.||||++.++|++. |+|+||+++|+||++|||++|||+||++++++|||+|.||++|+|+|||+++|++||++||
T Consensus 38 ~viY~i~~~~f~~~~~~~~G~~~g~~~~l~yl~~lGv~~i~l~Pi~~~~~~~gY~~~dy~~i~~~~Gt~~d~~~lv~~~h 117 (669)
T 3k8k_A 38 DISYQLLLYSFADSDGDGYGDLNGVTQKLDYLNQLGVKALWLSPIHPCMSYHGYDVTDYTKVNPQLGTESDFDRLVTEAH 117 (669)
T ss_dssp CCEEEECTTTSCCSSSSSSCCHHHHHTTHHHHHTTTCSEEEECCCSSBSSTTCCSBSCTTSCCTTTCCHHHHHHHHHHHH
T ss_pred cEEEEEEhHHhcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcccccccccccCCHHHHHHHHHHHH
Confidence 69999999999864 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEEEEccccCcCCCCCC-------CCcccc---cC-C---------------------CC---------CC----
Q 015125 101 QHKVRAMADIVINHRVGTTQGH-------GGKYNR---YD-G---------------------IP---------LS---- 135 (413)
Q Consensus 101 ~~Gi~VilD~V~NH~~~~~~~~-------~~~y~~---~~-~---------------------~~---------~~---- 135 (413)
++||+||||+|+||++.+|+|+ .+.|.. +. . .+ ..
T Consensus 118 ~~gi~vi~D~V~NH~~~~~~wf~~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~f~g~~~~~~ 197 (669)
T 3k8k_A 118 NRGIKIYLDYVMNHTGTAHPWFTEASSSSESPYRNYYSFSEDPKTDIAAGKIAMITQEGAAGYNAAEWFQVSDETAAVKG 197 (669)
T ss_dssp HTTCEEEEEECCSEEETTSHHHHHHHHCTTSTTGGGBCEESCHHHHHHTTCSTTSCSSGGGGCCGGGEEESCSCCCCEEE
T ss_pred HcCCEEEEEECcccCCCcCHHHHHHhhCCCCCccceeEECCCCcccccccccccccccccccCCCcccccccCCCccccc
Confidence 9999999999999999998753 222221 21 0 00 00
Q ss_pred -------CCCCC--------------------------------eec-------------------------------cC
Q 015125 136 -------WDEHA--------------------------------VTS-------------------------------CT 145 (413)
Q Consensus 136 -------~~~~~--------------------------------~~~-------------------------------~~ 145 (413)
|.... ++. +.
T Consensus 198 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (669)
T 3k8k_A 198 LLKFTLDWSNAPSPILVVSTGTKADEDNPDTGTDNAKYLYYGEDICKKFYDKGNNIYELTVDFESTWGLLIRTSNASFWP 277 (669)
T ss_dssp EEEEEEECTTTTSCEEEEEECSSCCCCCCCCCCTTCCEEEETTTEEEECEEEETTEEEEEEEEEESSCEEEESCCSSSCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 22110 000 00
Q ss_pred ----------------------------------CCCCCCcCCCCCCC-CCcCCCC-------CHHHHHHHHHHHHHHHh
Q 015125 146 ----------------------------------GGLGNGSTGDNFHG-VPNIDHT-------QHFVRKDIIAWLRWLRN 183 (413)
Q Consensus 146 ----------------------------------~~~~~~~~~~~~~~-~~dln~~-------~~~vr~~l~~~~~~w~~ 183 (413)
......+....... +||||++ ||+| ++|++++++|++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~~~~qPDLN~~~~~~~~~Np~V-~~l~dvl~~Wl~ 356 (669)
T 3k8k_A 278 SGTKYGASSSSEKLALNKDFKLTNAGNPANIMFDSQQITYFHSHFCTDWFADLNYGPVDQAGESPAY-QAIADAAKGWIA 356 (669)
T ss_dssp TTCEEBBSSTTCCBCTTSCEECBCSSSCBCBCBTTCCCCEEECTTSCTTEEEBCCCSGGGGGGCHHH-HHHHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccccccccccccccceeeeccccccCCccCCCCCccCCCCHHH-HHHHHHHHHHHH
Confidence 00000011122245 8999999 9999 999999999995
Q ss_pred hcCCCeEeecccCCC--------cHHHHHHHHHhhC---------C-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhh
Q 015125 184 TVGFQDFRFDFARGY--------SAKYVKEYIEGAR---------P-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWI 245 (413)
Q Consensus 184 ~~gvDGfR~D~a~~i--------~~~~~~~~~~~~~---------~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (413)
.||||||+|+|+++ +.+||+++++.++ + .++|||+|.. ...+..|.
T Consensus 357 -~GVDGFRlDaa~~i~k~~~~~~~~~f~~e~~~~v~~~~~~~g~~pd~~lvGEv~~~---------------~~~~~~y~ 420 (669)
T 3k8k_A 357 -RGVDGLRLDAVKHIYHSETSEENPRFLKMFYEDMNAYYKQKGHTDDFYMIGEVLSE---------------YDKVAPYY 420 (669)
T ss_dssp -TTCCEEEETTGGGSSSCSSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEEEECCCSC---------------HHHHGGGG
T ss_pred -CCCCEEEEechhhhhhccCCCccHHHHHHHHHHHHHHhhhcccCCCeEEEeccCCC---------------HHHHHHHh
Confidence 49999999999999 7899999887643 3 6889999974 24455565
Q ss_pred ccCCCcccccCccchHHHHHHhcc-chhhhhhhcCCCCCcccc-cCC-cceecccCCCCCcCCCCCCCChhHHHHHHHHH
Q 015125 246 DGTGQLSAAFDFTTKGILQEAVKG-QFWRLRDAQGKPPGVMGW-WPS-RAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYI 322 (413)
Q Consensus 246 ~~~~~~~~~~df~~~~~l~~~~~g-~~~~~~~~~~~~~~~~~~-~p~-~~v~flenHD~~R~~~~~~~~~~~~~la~a~l 322 (413)
. ++.++|+|.+...+..++.+ +...+...+......+.. .+. ..++|++|||++|+.+.++.+..++++|++++
T Consensus 421 ~---~l~~vfnF~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Fl~NHD~~R~~s~~g~d~~~~kla~all 497 (669)
T 3k8k_A 421 K---GLPALFEFSFWYRLEWGINNSTGCYFAKDILSYQQKYANYRSDYIEATKLSNHDEDRTSSKLGKSADKCKLAAAVL 497 (669)
T ss_dssp G---TCSEEECHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTCTTCEEECCSCCTTSCCHHHHTTTCHHHHHHHHHHH
T ss_pred c---cCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcccceeeeeccCCCCCccccccCCCHHHHHHHHHHH
Confidence 2 57899999998877776632 222222111100000110 111 36899999999999998876778999999999
Q ss_pred hcCCCeeEEecCcccC-----------------Cc-----------------------------hhHHHHHHHHHHHHHh
Q 015125 323 LMHPGIPSVFYDHFYD-----------------WG-----------------------------DSIHNQIVKLMDVRRQ 356 (413)
Q Consensus 323 l~~pGiP~Iy~G~E~g-----------------w~-----------------------------~~l~~~i~~L~~lR~~ 356 (413)
||+||+|+||||||+| |+ .+++.++|+|++||++
T Consensus 498 ltlpG~P~IYyGdEiGm~~~~~~~d~~~Rtpm~W~~~~~~w~~~~~n~~~~~~~~nv~~q~~d~~sll~~yr~Li~LRk~ 577 (669)
T 3k8k_A 498 LTSAGHPYIYYGEELGLYGTKDNGDEYVRSPMLWGDSYTTNYTDKTDATVSKNVKTVADQQADTHSLLNIYFSLTRLRNT 577 (669)
T ss_dssp HTSSSCCEEETTTTTTCCCCSTTCGGGGSCCCCCSSTTCCCCCSCCCTTHHHHSCCHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred HhCCCccEEEecccccccCCCCCCCccccCCccCCCCCCCCCCcccccccccccccHHHhhcCcHHHHHHHHHHHHHHHh
Confidence 9999999999999975 42 2589999999999999
Q ss_pred CcccCCCCeEE---EEe-c----CCEEEEEE---CCEEEEEEcCCCC
Q 015125 357 QDIHSRSSIKI---LEA-Q----SNLYSAII---GDKVCMKIGDGSW 392 (413)
Q Consensus 357 ~p~l~~G~~~~---~~~-~----~~~~~~~r---~~~~lv~lnn~~~ 392 (413)
+|+|+.|+++. +.. + ++++||.| +++++|++|++..
T Consensus 578 ~paL~~G~~~~~~~~~~~~~~~~~~v~ay~R~~~~e~~lVv~N~s~~ 624 (669)
T 3k8k_A 578 YPALAEGNMTKHSVYNESQEKDYKPIAAWYMTKDNEKLLVIHNFGGT 624 (669)
T ss_dssp CHHHHHCEEEECSSSSGGGTTTCTTEEEEEEEETTEEEEEEEECSSS
T ss_pred ChhhcCCceEEeeeeeccCccCcCCEEEEEEEeCCCEEEEEEeCCCC
Confidence 99999999983 333 3 57999998 5678888998653
|
| >1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-61 Score=497.66 Aligned_cols=364 Identities=18% Similarity=0.249 Sum_probs=265.0
Q ss_pred eeEEEeeecCCCCC-----ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCKH-----DWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-----g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.||||+|.++|++. |||+||+++|+|||+||||+|||+||++++. +|||+|.||++|+|+|||.+||++||++|
T Consensus 9 ~viYqi~~~~F~d~~~dg~Gdl~gi~~~ldyl~~LGv~~I~l~Pi~~~~~~~~GYd~~dy~~id~~~Gt~~df~~lv~~~ 88 (558)
T 1uok_A 9 SVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEM 88 (558)
T ss_dssp CCEEEECGGGTCCSSSSSSCCHHHHHTTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHH
T ss_pred CeEEEEecHHhcCCCCCCcCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHHHHHHHHH
Confidence 69999999999864 8999999999999999999999999999986 69999999999999999999999999999
Q ss_pred HHcCCEEEEEEccccCcCCCCCC-------CCccc---ccCCC-----CCCCCCCC---eeccCCCCCCCcCCCCCCCCC
Q 015125 100 KQHKVRAMADIVINHRVGTTQGH-------GGKYN---RYDGI-----PLSWDEHA---VTSCTGGLGNGSTGDNFHGVP 161 (413)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~-------~~~y~---~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 161 (413)
|++||+||||+|+||++.+|+|+ .+.|. .|.+. +.+|.... ...+....+..........+|
T Consensus 89 h~~Gi~VilD~V~NH~s~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~~~~~f~~~~w~~~~~~~~~y~~~f~~~~p 168 (558)
T 1uok_A 89 HERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSGSAWQYDEMTDEYYLHLFSKKQP 168 (558)
T ss_dssp HHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCSSSSCSSCBBCTTSSBSEEEETTTTEEEECSSCTTSC
T ss_pred HHCCCEEEEEEecccccccchHHHHHhcCCCCCcccceEeccCcCCCCCccccccCCCccccccCCcCcEEeeccccccc
Confidence 99999999999999999998753 12222 12110 11111100 000000001111112236789
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcH----------------------------HHHHHHHHhhC--
Q 015125 162 NIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA----------------------------KYVKEYIEGAR-- 211 (413)
Q Consensus 162 dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~----------------------------~~~~~~~~~~~-- 211 (413)
|||++||+||++|++++++|+ ++||||||+|+|++++. ++|+++.++++
T Consensus 169 dLn~~np~Vr~~i~~~~~~W~-~~gvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 247 (558)
T 1uok_A 169 DLNWDNEKVRQDVYEMMKFWL-EKGIDGFRMDVINFISKEEGLPTVETEEEGYVSGHKHFMNGPNIHKYLHEMNEEVLSH 247 (558)
T ss_dssp BBCTTSHHHHHHHHHHHHHHH-HTTCCEEEETTGGGSCCCTTCCCCCCCCSSCBCCGGGTTTCTTHHHHHHHHHHHTGGG
T ss_pred cccCCCHHHHHHHHHHHHHHH-HcCCCEEEEccccccccccccCCCCCcccccccccccccCChHHHHHHHHHHHHhhcc
Confidence 999999999999999999999 69999999999988764 57888887553
Q ss_pred -CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhcc-CCCcccccCccchHHHHHHhc------c--chhhhhhhcCCC
Q 015125 212 -PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQEAVK------G--QFWRLRDAQGKP 281 (413)
Q Consensus 212 -~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~df~~~~~l~~~~~------g--~~~~~~~~~~~~ 281 (413)
+.++|||+|... ...+..|+.. .++++++|+|.+.. ..... + +...+...+...
T Consensus 248 ~~~~~vgE~~~~~--------------~~~~~~y~~~~~~~~~~~~~f~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~ 311 (558)
T 1uok_A 248 YDIMTVGEMPGVT--------------TEEAKLYTGEERKELQMVFQFEHMD--LDSGEGGKWDVKPCSLLTLKENLTKW 311 (558)
T ss_dssp SCCEEEEECTTCC--------------HHHHHHHHCGGGCSCSCEECCGGGS--TTEETTEEEEECCCCHHHHHHHHHHH
T ss_pred CCeEEEEeccCCC--------------HHHHHHHhccCCCccceEEehhhhh--cccccccccccCCCCHHHHHHHHHHH
Confidence 478999999542 3456677754 34678889887642 11100 1 011222111100
Q ss_pred CCcccccCCcceecccCCCCCcCCCCCCCCh----hHHHHHHHHHhcCCCeeEEecCcccCCc-----------------
Q 015125 282 PGVMGWWPSRAVTFLDNHDTGSTQAHWPFPS----NHIMEGYAYILMHPGIPSVFYDHFYDWG----------------- 340 (413)
Q Consensus 282 ~~~~~~~p~~~v~flenHD~~R~~~~~~~~~----~~~~la~a~ll~~pGiP~Iy~G~E~gw~----------------- 340 (413)
...+. .+...++|++|||++|+.+.++... .+++++++++||+||+|+||||+|+|..
T Consensus 312 ~~~~~-~~~~~~~fl~NHD~~R~~~~~g~~~~~~~~~~k~~~~~llt~pG~P~iy~G~E~G~~~~~~~~~~~~~d~~~~~ 390 (558)
T 1uok_A 312 QKALE-HTGWNSLYWNNHDQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYIYQGEEIGMTNVRFESIDEYRDIETLN 390 (558)
T ss_dssp HHHTS-SSSCCEECSCCTTSCCHHHHTSCSSTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCCSSGGGCCCHHHHH
T ss_pred HHhcc-cCCccceeecCCCccchhhhcCCchhhhHHHHHHHHHHHHhCCCceEEEechhcCccCCCCCCHHhhcChhhhc
Confidence 00000 1235679999999999887665332 2589999999999999999999997521
Q ss_pred -------------------------------------------------------------------hhHHHHHHHHHHH
Q 015125 341 -------------------------------------------------------------------DSIHNQIVKLMDV 353 (413)
Q Consensus 341 -------------------------------------------------------------------~~l~~~i~~L~~l 353 (413)
.+++.++|+|++|
T Consensus 391 ~~~~~~~~~g~~~~~~~~~~~~~sRd~~R~pm~W~~~~~agFs~~~pwl~~~~~~~~~nv~~q~~~~~s~~~~y~~Li~l 470 (558)
T 1uok_A 391 MYKEKVMERGEDIEKVMQSIYIKGRDNARTPMQWDDQNHAGFTTGEPWITVNPNYKEINVKQAIQNKDSIFYYYKKLIEL 470 (558)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHCGGGGTSCCCCCSSTTTTSCSSCCSSCCCGGGGTSSHHHHHHCTTSHHHHHHHHHHH
T ss_pred chhhhhhhcCCcHHHhhhhhccccCCCCcCCccCCCcCCCCCcCCCCCCcCCccccccCHHHHhhccccHHHHHHHHHHH
Confidence 2588999999999
Q ss_pred HHhCcccCCCCeEEEE-ecCCEEEEEE---CCEEEEEEcCCCCC-----CCCC---CcEEeeeCCc
Q 015125 354 RRQQDIHSRSSIKILE-AQSNLYSAII---GDKVCMKIGDGSWC-----PAGK---EWTLATSGHK 407 (413)
Q Consensus 354 R~~~p~l~~G~~~~~~-~~~~~~~~~r---~~~~lv~lnn~~~~-----~~~~---~~~~~~s~~~ 407 (413)
|+++|+|..|+++.+. .++++++|.| +++++|++|.++.. |... .+++++++..
T Consensus 471 Rk~~~~l~~G~~~~~~~~~~~v~a~~R~~~~~~~lvv~N~s~~~~~~~l~~~~~~~~~~~ll~~~~ 536 (558)
T 1uok_A 471 RKNNEIVVYGSYDLILENNPSIFAYVRTYGVEKLLVIANFTAEECIFELPEDISYSEVELLIHNYD 536 (558)
T ss_dssp HHHCHHHHHCEEEEESTTCSSEEEEEEEETTEEEEEEEECSSSCEEEECCTTCCCSCEEEEEESSC
T ss_pred HccCccccccceEEeecCCCCEEEEEEEeCCcEEEEEEECCCCCEEEecccccccccceEEecCCC
Confidence 9999999999999874 4568999999 46788888886532 2211 2677777653
|
| >1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-61 Score=511.30 Aligned_cols=347 Identities=14% Similarity=0.265 Sum_probs=264.7
Q ss_pred ceeEEEeeecCCCCC-----------------------ccHHHHHhhhh--hHHHcCCCEEEcCCCCCC-----------
Q 015125 25 REILFQGFNWESCKH-----------------------DWWRNLERKVP--DISKSGFTSVWLPPATHS----------- 68 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~-----------------------g~~~gi~~~L~--yLk~lGv~~I~L~Pi~~~----------- 68 (413)
+.||||+|...|++. |||+||+++|| |||+||||+|||+||+++
T Consensus 14 ~~viYqi~~~~F~d~~~~n~~~~~~~dg~~~~~~~~~gGdl~gi~~kLd~~yLk~LGvt~IwL~Pi~~~~~~~~~~~g~~ 93 (686)
T 1d3c_A 14 TDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVN 93 (686)
T ss_dssp TCCEEEECGGGTCCSCGGGCCCGGGBCTTCCSTTSBCCCCHHHHHHHHHTTTTGGGTCCEEEECCCEEECCCCEESSSCE
T ss_pred cCcEEEEecccccCCCCCcCCCCcccCCCccccccccCcCHHHHHHhcCHHHHHhcCCCEEEeCCcccCCcccccccCcc
Confidence 369999999988752 79999999999 999999999999999984
Q ss_pred -CCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCC---CCCCcccccCC---------C-CC
Q 015125 69 -FAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ---GHGGKYNRYDG---------I-PL 134 (413)
Q Consensus 69 -~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~---~~~~~y~~~~~---------~-~~ 134 (413)
.++|||+|.|||+|+|+|||++||++||++||++||+||||+|+||++..+. ++......+.+ . ..
T Consensus 94 ~~~~~GYd~~dy~~idp~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NHts~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 173 (686)
T 1d3c_A 94 NTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQN 173 (686)
T ss_dssp ECCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTC
T ss_pred CCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCcCccccccccccchhhcCccccCCcccccCCCCccC
Confidence 3579999999999999999999999999999999999999999999999873 22111000000 0 01
Q ss_pred CCCCCCeeccCCCCCC--CcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC-
Q 015125 135 SWDEHAVTSCTGGLGN--GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR- 211 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~- 211 (413)
.|+..+. ..|.. ....+.+.++||||++||+||++|++++++|++ +||||||+|++++++.+||+++.++++
T Consensus 174 ~f~~~~~----~~~~~~~~~~y~~~~~~pDLn~~np~Vr~~i~~~l~~Wl~-~GVDGfRlDa~~~i~~~f~~~~~~~v~~ 248 (686)
T 1d3c_A 174 LFHHNGG----TDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWLD-LGIDGIRMNAVKHMPFGWQKSFMAAVNN 248 (686)
T ss_dssp CBCCSCB----CCSSSHHHHHHSBBTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCHHHHHHHHHHHHT
T ss_pred ceecCCC----CCcCCCccccccCcCCCCCcccCCHHHHHHHHHHHHHHHh-CCCCEEEEeccccCCHHHHHHHHHHHHh
Confidence 1111110 11110 011233457999999999999999999999995 999999999999999999999988764
Q ss_pred --CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhcc---chhhhhhhcCCCCCccc
Q 015125 212 --PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG---QFWRLRDAQGKPPGVMG 286 (413)
Q Consensus 212 --~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g---~~~~~~~~~~~~~~~~~ 286 (413)
+.+++||.|.... .. ......|.+.. + .++|||++...+.+++.+ ....+...+......+
T Consensus 249 ~~~~~~vgE~~~~~~-----~~------~~~~~~~~~~~-~-~~~~df~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~- 314 (686)
T 1d3c_A 249 YKPVFTFGQWFLGVN-----EV------SPENHKFANES-G-MSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADY- 314 (686)
T ss_dssp TSCCEEEECCCCCTT-----CC------CHHHHHHHHHS-S-SEEBCHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHC-
T ss_pred cCCceEEeccccCCc-----cc------chhhhhhhccC-C-CceeCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc-
Confidence 6889999986421 10 02334444332 2 367999999888888753 2233333221000000
Q ss_pred ccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccCCc-----------------hhHHHHHHH
Q 015125 287 WWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWG-----------------DSIHNQIVK 349 (413)
Q Consensus 287 ~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~gw~-----------------~~l~~~i~~ 349 (413)
..+...++|++|||++|+.+ +..+..++++|++++|++||+|+||||+|+|.. .+++++|++
T Consensus 315 ~~~~~~~~fl~nHD~~R~~~-~~~~~~~~~~a~a~llt~pG~P~IyyG~E~g~~~~~dp~~R~~~~~~~~~~~~~~~~~~ 393 (686)
T 1d3c_A 315 AQVDDQVTFIDNHDMERFHA-SNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSGGTDPDNRARIPSFSTSTTAYQVIQK 393 (686)
T ss_dssp TTGGGCEECSCCTTSCCSSC-TTSCHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCSTTGGGCCCCCCCSCSHHHHHHHH
T ss_pred cccccceeeccCCCcccccc-ccCCHHHHHHHHHHHHhCCCCcEEEecceecccCCCCcccccCCCCcCCCcHHHHHHHH
Confidence 12346889999999999988 444567899999999999999999999998632 368999999
Q ss_pred HHHHHHhCcccCCCCeEEEEecCCEEEEEE---CCEEEEEEcCCC
Q 015125 350 LMDVRRQQDIHSRSSIKILEAQSNLYSAII---GDKVCMKIGDGS 391 (413)
Q Consensus 350 L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r---~~~~lv~lnn~~ 391 (413)
|++||+++|+|+.|+++.+..++++++|.| +++++|++|++.
T Consensus 394 Li~lRk~~~al~~G~~~~~~~~~~v~af~R~~~~~~~lVv~N~s~ 438 (686)
T 1d3c_A 394 LAPLRKCNPAIAYGSTQERWINNDVLIYERKFGSNVAVVAVNRNL 438 (686)
T ss_dssp HTTHHHHCHHHHHCEEEEEEECSSEEEEEEECSSEEEEEEEECCT
T ss_pred HHHHHhhChHhhCCcEEEEeeCCCEEEEEEEcCCcEEEEEEECCC
Confidence 999999999999999998888889999999 467888999863
|
| >1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-60 Score=496.78 Aligned_cols=365 Identities=18% Similarity=0.243 Sum_probs=262.1
Q ss_pred eeEEEeeecCCCCC-----ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCKH-----DWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-----g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.||||+|.++|++. |||+||+++|+|||+||||+|||+||++++. +|||+|.||++|+|+|||.+||++||++|
T Consensus 10 ~viYqi~~~~F~~~~~dg~Gdl~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~GYd~~dy~~idp~~Gt~~df~~Lv~~a 89 (557)
T 1zja_A 10 AVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAEL 89 (557)
T ss_dssp CCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHH
T ss_pred CcEEEEEchHhcCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCccCCCCCCCCCcccccccCcccCCHHHHHHHHHHH
Confidence 69999999999864 8999999999999999999999999999986 69999999999999999999999999999
Q ss_pred HHcCCEEEEEEccccCcCCCCCC-------CCcc---cccCCC-----CCCCCCCC---eeccCCCCCCCcCCCCCCCCC
Q 015125 100 KQHKVRAMADIVINHRVGTTQGH-------GGKY---NRYDGI-----PLSWDEHA---VTSCTGGLGNGSTGDNFHGVP 161 (413)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~-------~~~y---~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 161 (413)
|++||+||||+|+||++.+|+|+ .++| +.|.+. +..|.... ...+....+..+.......+|
T Consensus 90 H~~Gi~VilD~V~NHts~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~~~~~f~~~~w~~~~~~~~~y~~~f~~~~p 169 (557)
T 1zja_A 90 KKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQP 169 (557)
T ss_dssp HHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCBTTBCSSCCBCTTSSBSEEEETTTTEEEECSSCTTSC
T ss_pred HHCCCEEEEEEeccccccchhHHHHhhcCCCCCCccceEecCCcCCCCCccccccCCCccccccCCcCcEEEecccccCC
Confidence 99999999999999999998753 2222 112110 11111100 000000000011112235789
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcH--------------------------HHHHHHHHhhC---C
Q 015125 162 NIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA--------------------------KYVKEYIEGAR---P 212 (413)
Q Consensus 162 dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~--------------------------~~~~~~~~~~~---~ 212 (413)
+||++||+||++|++++++|+ ++||||||+|++++++. +||+++.++++ +
T Consensus 170 dLN~~np~Vr~~l~~~~~~Wl-~~gvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~ 248 (557)
T 1zja_A 170 DLNWDTPKLREELYAMLRFWL-DKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQGPNLHRYLQEMHEKVFDHYD 248 (557)
T ss_dssp BBCTTCHHHHHHHHHHHHHHH-TTTCCEEEETTGGGSSCCTTCCCCCHHHHHTHHHHTTCCTTHHHHHHHHHHHTGGGSC
T ss_pred ccCCCCHHHHHHHHHHHHHHH-HcCCCEEeecchhhcccccccCcCCCcccccccccccCChHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999 69999999999988753 58888887553 4
Q ss_pred CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhcc-CCCcccccCccchHHHH--HHhc-cc--hhhhhhhcCCCCCccc
Q 015125 213 IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQ--EAVK-GQ--FWRLRDAQGKPPGVMG 286 (413)
Q Consensus 213 ~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~df~~~~~l~--~~~~-g~--~~~~~~~~~~~~~~~~ 286 (413)
.+++||+|... ...+..|+.. +.+++++|+|.+...-. ..+. +. ...+...+......+
T Consensus 249 ~~~igE~~~~~--------------~~~~~~y~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~- 313 (557)
T 1zja_A 249 AVTAGEIFGAP--------------LNQVPLFIDSRRKELDMAFTFDLIRYDRALDRWHTIPRTLADFRQTIDKVDAIA- 313 (557)
T ss_dssp CEEEEECCSCC--------------GGGHHHHHCGGGCSCSEEECCTTTTTTBCTTSSCBCCCCHHHHHHHHHHHHHHH-
T ss_pred eEEEEeccCCC--------------HHHHHHHhccCCCcccEEEehhhhhhcccccccccCCCCHHHHHHHHHHHHHhc-
Confidence 78999999532 2456677653 34678888886541100 0000 10 112221111000000
Q ss_pred ccCCcceecccCCCCCcCCCCCCCCh-----hHHHHHHHHHhcCCCeeEEecCcccCCc---------------------
Q 015125 287 WWPSRAVTFLDNHDTGSTQAHWPFPS-----NHIMEGYAYILMHPGIPSVFYDHFYDWG--------------------- 340 (413)
Q Consensus 287 ~~p~~~v~flenHD~~R~~~~~~~~~-----~~~~la~a~ll~~pGiP~Iy~G~E~gw~--------------------- 340 (413)
..+...++|++|||++|+.+.++.+. .+++++++++||+||+|+||||+|+|..
T Consensus 314 ~~~~~~~~fl~nHD~~R~~~~~~~~~~~~~~~~~k~~~~~llt~pG~P~iy~G~E~G~~~~~~~~~~~~~d~~~~~~~~~ 393 (557)
T 1zja_A 314 GEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDDIEVKGFFQD 393 (557)
T ss_dssp TTTCCBEECSCCTTSCCHHHHHSCCSTTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCCCSGGGCCCHHHHHHHHH
T ss_pred ccCCccceeccCCCCcchhhhhCCCchhhHHHHHHHHHHHHHhCCCceEEEecccccccCCCcCCHHHccCHHHhhhHHH
Confidence 01234679999999999877655332 3589999999999999999999997531
Q ss_pred ---------------------------------------------------------------hhHHHHHHHHHHHHHhC
Q 015125 341 ---------------------------------------------------------------DSIHNQIVKLMDVRRQQ 357 (413)
Q Consensus 341 ---------------------------------------------------------------~~l~~~i~~L~~lR~~~ 357 (413)
.+++.++|+|++||+++
T Consensus 394 ~~~~g~~~~~~~~~~~~~~~rd~~R~pm~W~~~~~~gFs~~~pwl~~~~~~~~~nv~~q~~~~~s~~~~~~~Li~lRk~~ 473 (557)
T 1zja_A 394 YVETGKATAEELLTNVALTSRDNARTPFQWDDSANAGFTTGKPWLKVNPNYTEINAAREIGDPKSVYSFYRNLISIRHET 473 (557)
T ss_dssp HTTTTSSCHHHHHHHHHHHCGGGGCSCCCCSSSGGGGSCSSCCSSCCCGGGGTSCHHHHHTCTTSHHHHHHHHHHHHHHC
T ss_pred HhhcCCccHHHHHhhhccccCCCCcCCccCCCCCCCCCCCCCCCCcCCccccccCHHHHhcccchHHHHHHHHHHHHccC
Confidence 25889999999999999
Q ss_pred cccCCCCeEEEE-ecCCEEEEEE---CCEEEEEEcCCCCC-----CCCCC-cEEeeeCC
Q 015125 358 DIHSRSSIKILE-AQSNLYSAII---GDKVCMKIGDGSWC-----PAGKE-WTLATSGH 406 (413)
Q Consensus 358 p~l~~G~~~~~~-~~~~~~~~~r---~~~~lv~lnn~~~~-----~~~~~-~~~~~s~~ 406 (413)
|+|+.|+++.+. .++++++|.| ++.++|++|.+... |..+. |++++++.
T Consensus 474 ~~l~~g~~~~~~~~~~~v~a~~R~~~~~~~lvv~N~s~~~~~~~l~~~~~~~~~l~~~~ 532 (557)
T 1zja_A 474 PALSTGSYRDIDPSNADVYAYTRSQDGETYLVVVNFKAEPRSFTLPDGMHIAETLIESS 532 (557)
T ss_dssp THHHHSEEEESCTTCSSEEEEEEEETTEEEEEEEECSSSCEEEECCTTCCEEEEEEEES
T ss_pred chhhcceEEEeecCCCcEEEEEEEcCCceEEEEEECCCCCEEEeccCCCccceEEEecC
Confidence 999999998864 4567999998 45788888886532 22233 36666654
|
| >4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-60 Score=495.32 Aligned_cols=364 Identities=16% Similarity=0.240 Sum_probs=254.2
Q ss_pred eeEEEeeecCCCCC-----ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCKH-----DWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-----g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.||||+|.++|++. |||+||++||||||+||||+||||||+++++ +|||+|.|||+|||+|||.+|||+||++|
T Consensus 10 ~viYei~~~~F~d~~~dg~Gdl~Gi~~kLdYLk~LGvt~I~L~Pi~~~~~~~~GYd~~dy~~vdp~~Gt~~dfk~Lv~~a 89 (549)
T 4aie_A 10 AVVYQVYPKSFQDSNGDGIGDLQGIISRLDYLEKLGIDAIWLSPVYQSPGVDNGYDISDYEAIDPQYGTMADMDELISKA 89 (549)
T ss_dssp CCEEEECGGGTCCSSSSSSCCHHHHHTTHHHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHH
T ss_pred CeEEEEEcchhcCCCCCCCcCHHHHHHhhHHHHHCCCCEEEeCCCcCCCCCCCCcCccCCCCcCcccCCHHHHHHHHHHH
Confidence 69999999999876 8999999999999999999999999999975 89999999999999999999999999999
Q ss_pred HHcCCEEEEEEccccCcCCCCCCC-------Cccc---ccCCC-----CCCCCCC---CeeccCCCCCCCcCCCCCCCCC
Q 015125 100 KQHKVRAMADIVINHRVGTTQGHG-------GKYN---RYDGI-----PLSWDEH---AVTSCTGGLGNGSTGDNFHGVP 161 (413)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~~-------~~y~---~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 161 (413)
|++||+||||+|+||||.+|+|+. ..|. .+.+. +.+|... ....+....+..........+|
T Consensus 90 H~~Gi~VilD~V~NHts~~~~wf~~~~~~~~~~~~~~y~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 169 (549)
T 4aie_A 90 KEHHIKIVMDLVVNHTSDQHKWFVEAKKGKDNQYRDYYIWRDPVDEHEPNDLKSAFSGSAWKYDERSGQYYLHFFADQQP 169 (549)
T ss_dssp HHTTCEEEEEECCSBCCTTSHHHHHHTTCTTSTTGGGBCEECCBTTBCSSCCBCTTSSBSEEEETTTTEEEECSSCTTSC
T ss_pred HHCCCEEEEEECccCCcCCcchhhhhhhcccccccccccccCCcccCCCCCcccccCCCcccccccCCceEecccCCCCC
Confidence 999999999999999999987532 1221 11110 0111100 0000001111111222357899
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHH--------------HHHHHHhh---CCCeEEEcccCCCC
Q 015125 162 NIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKY--------------VKEYIEGA---RPIFSVGEYWDSCN 224 (413)
Q Consensus 162 dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~--------------~~~~~~~~---~~~~~vgE~~~~~~ 224 (413)
|||++||+|+++|++++++|+ ++||||||+|+|++++.++ ++.+.+.. ++.+++||.|...
T Consensus 170 dln~~np~v~~~i~~~~~~W~-e~gvDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgE~~~~~- 247 (549)
T 4aie_A 170 DLNWQNTELRQKIYNMMNFWL-DKGIGGFRMDVIELIGKDPDKNIRENGPMLHPYLQEMNKATFGKRDVMTVGETWNAT- 247 (549)
T ss_dssp BBCTTCHHHHHHHHHHHHHHH-HTTCCEEEETTGGGTTCBGGGTBCTTCTTHHHHHHHHHHHTTTTTCCEEEEECTTCC-
T ss_pred ccccCCHHHHHHHHHHHHHHH-HhcCCceeEecHHhccccchhhhcccccccchHHHhhhhccccccceeeeecccCCC-
Confidence 999999999999999999997 7999999999999987543 33333332 2478899999752
Q ss_pred CCCCCCCCccchhhHhHhhhhccC-CCcccccCccchHHHHHHhccc---------hhhhhhhcCCCCCcccccCCccee
Q 015125 225 YNSHGLDYNQDSHRQRIINWIDGT-GQLSAAFDFTTKGILQEAVKGQ---------FWRLRDAQGKPPGVMGWWPSRAVT 294 (413)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~df~~~~~l~~~~~g~---------~~~~~~~~~~~~~~~~~~p~~~v~ 294 (413)
+..+..|.+.. ..+...|+|... ......+. ...+..............+...++
T Consensus 248 -------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (549)
T 4aie_A 248 -------------PKIAEEYSDPDRHELSMVFQFENQ--SLDQQPGKEKWDLKPLDLGELKKVLVKWQTKIDFDHAWNSL 312 (549)
T ss_dssp -------------HHHHHHHHCGGGCSCSEEECCGGG--GGGBCTTSCTTSBCCCCHHHHHHHHHHHHHSSCTTSCCCEE
T ss_pred -------------HHHHHHhcCCcccccccccccccc--ccccccccccccccccchHHHHHHHHHhhhhccccccccce
Confidence 24445554432 123344444321 11111000 000110000000001112235678
Q ss_pred cccCCCCCcCCCCCCCC----hhHHHHHHHHHhcCCCeeEEecCcccCC-------------------------------
Q 015125 295 FLDNHDTGSTQAHWPFP----SNHIMEGYAYILMHPGIPSVFYDHFYDW------------------------------- 339 (413)
Q Consensus 295 flenHD~~R~~~~~~~~----~~~~~la~a~ll~~pGiP~Iy~G~E~gw------------------------------- 339 (413)
|++|||++|+.+.++.+ ..+.++++++++|+||+|+||||+|+|.
T Consensus 313 f~~nHD~~r~~s~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~~~~~~~~d~~~~~~~~~~~~~g~~~~ 392 (549)
T 4aie_A 313 FWENHDIPRVISRWGNDQEYRVQCAKMFAIILHMMHGTPYIFNGEEIGMTNCPVKNIDEVEDIESINMYNERLAEGYDEE 392 (549)
T ss_dssp CSCCTTSCCHHHHHSCCSTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCCSSGGGCCCHHHHHHHHHHHHTTCCHH
T ss_pred eeccCCchhhhhhcCCcHHHHHHHHHHHHHHHhcCCCceEEEcchhhCccCCCCCChhhcCCHHHHhhHHHHHhcCCCHH
Confidence 99999999987665432 3568899999999999999999999863
Q ss_pred --------------------c--------------------------------hhHHHHHHHHHHHHHhCcccCCCCeEE
Q 015125 340 --------------------G--------------------------------DSIHNQIVKLMDVRRQQDIHSRSSIKI 367 (413)
Q Consensus 340 --------------------~--------------------------------~~l~~~i~~L~~lR~~~p~l~~G~~~~ 367 (413)
+ .+++.++|+|++||+++|+|+.|+++.
T Consensus 393 ~~~~~~~~~~r~~~R~~m~W~~~~~~gfs~~~~~~~~~~~~~~~nv~~q~~d~~Sll~~~r~Li~lRk~~pal~~G~~~~ 472 (549)
T 4aie_A 393 ELIHAINVKGRDNARRPMQWNDEKNAGFSEVDPWLSVNPNYKDINVENALADPNSIFYTYQKLIKLRHENPIVVDGDFSL 472 (549)
T ss_dssp HHHHHHHHHCGGGGCSCCCCSSSGGGGSCSSCCSSCCCGGGGTSSHHHHHHCTTSHHHHHHHHHHHHHHCHHHHHCEEEE
T ss_pred HHHhhhhccCCccccCCCCCCCCCCCCCCCCCccccCCcchhhhhHHHHHhCcchHHHHHHHHHHHHhhCHHhhCCceEE
Confidence 1 127889999999999999999999998
Q ss_pred EEec-CCEEEEEE---CCEEEEEEcCCCCC---CCCCCcEEeeeCC
Q 015125 368 LEAQ-SNLYSAII---GDKVCMKIGDGSWC---PAGKEWTLATSGH 406 (413)
Q Consensus 368 ~~~~-~~~~~~~r---~~~~lv~lnn~~~~---~~~~~~~~~~s~~ 406 (413)
+..+ +.+++|.| +++++|++|.++.. +....++.++++.
T Consensus 473 ~~~~~~~v~a~~R~~~~~~~lvv~N~s~~~~~~~~~~~~~~ll~~~ 518 (549)
T 4aie_A 473 VSNTQDAVLAYYRILNDKKWLVVANLSNEEQNFVSNDQIETILSNY 518 (549)
T ss_dssp CTTCCTTEEEEEEEETTEEEEEEEECSSSCEEEECCCCEEEEEESS
T ss_pred EecCCCcEEEEEEEeCCCEEEEEEECCCCCEEEeCCCCeEEEccCC
Confidence 8654 46999998 56788888886543 2334666666653
|
| >1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-60 Score=503.79 Aligned_cols=346 Identities=18% Similarity=0.245 Sum_probs=259.9
Q ss_pred ccHHHHHhhhhhHHH-cCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcC--C--EEEEEEcccc
Q 015125 40 DWWRNLERKVPDISK-SGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK--V--RAMADIVINH 114 (413)
Q Consensus 40 g~~~gi~~~L~yLk~-lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~G--i--~VilD~V~NH 114 (413)
|||+||+++|||||+ ||||+||||||++++++|||+|.|||+|+|+|||++|||+||++||++| | +||||+|+||
T Consensus 188 G~~~gi~~~LdyLk~~LGvt~I~L~Pi~~~~~~~GYd~~dy~~id~~~Gt~~dfk~LV~~~H~~G~~I~~~VIlD~V~NH 267 (637)
T 1ji1_A 188 GDLAGIDQKLGYIKKTLGANILYLNPIFKAPTNHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILDGVFNH 267 (637)
T ss_dssp CCHHHHHHTHHHHHTTTCCCEEEESCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHCSSSSSCCEEEEEECCSB
T ss_pred cCHHHHHHhHHHHHhccCCCEEEECCCccCCCCCCcCccchhhhccccCCHHHHHHHHHHHHhCCCCccceEEEEECccc
Confidence 899999999999999 9999999999999999999999999999999999999999999999999 9 9999999999
Q ss_pred CcCCCCCCCCcccccC------C---CCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCH--HHHHHH----HHHHH
Q 015125 115 RVGTTQGHGGKYNRYD------G---IPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQH--FVRKDI----IAWLR 179 (413)
Q Consensus 115 ~~~~~~~~~~~y~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~--~vr~~l----~~~~~ 179 (413)
++.++++++..-. |. + ...+|.. +.+.............+|+||++|| +||++| +++++
T Consensus 268 ~~~~~~~f~~~~~-f~~~g~y~~~~~py~~~y~-----~~~~~~~~~~~~g~~~~pdln~~~p~~~Vr~~i~~~~~~~~~ 341 (637)
T 1ji1_A 268 TGDSHPWFDKYNN-FSSQGAYESQSSPWYNYYT-----FYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAK 341 (637)
T ss_dssp CCTTSTTTCTTCC-SSSCCTTTCTTCTTGGGBC-----EEETTTEECEETTEEEEEBBBCCSTTCHHHHHHTTSTTSHHH
T ss_pred CCCCcHHHhhhhc-cCccccccCCCCccccccc-----cCCCCCCcccccCCCCcccccccCChHHHHHHHHhhhHHHHH
Confidence 9999887543211 11 0 0001110 0000000000001235799999999 999999 99999
Q ss_pred HHHhh-cCCCeEeecccCCC---c--------HHHHHHHHHhhC---C-CeEEEcccCCCCCCCCCCCCccchhhHhHhh
Q 015125 180 WLRNT-VGFQDFRFDFARGY---S--------AKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIIN 243 (413)
Q Consensus 180 ~w~~~-~gvDGfR~D~a~~i---~--------~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (413)
+|+++ +||||||+|+|+++ + .+||+++.+.++ | .++|||.|... ..
T Consensus 342 ~Wl~~~~gvDGfR~Da~~~l~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~ligE~~~~~------------------~~ 403 (637)
T 1ji1_A 342 TYLNPPYSVDGWRLDAAQYVDANGNNGSDVTNHQIWSEFRNAVKGVNSNAAIIGEYWGNA------------------NP 403 (637)
T ss_dssp HHHSTTTCCCEEEETTGGGCBSTTCCCSSHHHHHHHHHHHHHHHHHCTTCEEEECCSSCC------------------GG
T ss_pred HHHhCcCCCCEEEEEchhhhhccCccccccchHHHHHHHHHHHHhhCCCeEEEEEecCCc------------------hh
Confidence 99987 99999999999999 5 889999988764 3 78999999652 12
Q ss_pred hhccCCCcccccCc-cchHHHHHHhccc----------hhhhhhhcCCCCCcccc-cCCcceecccCCCCCcCCCCCCCC
Q 015125 244 WIDGTGQLSAAFDF-TTKGILQEAVKGQ----------FWRLRDAQGKPPGVMGW-WPSRAVTFLDNHDTGSTQAHWPFP 311 (413)
Q Consensus 244 ~~~~~~~~~~~~df-~~~~~l~~~~~g~----------~~~~~~~~~~~~~~~~~-~p~~~v~flenHD~~R~~~~~~~~ 311 (413)
|+..+.+++++++| .++..++..+.+. ...+...+......+.. .+...++|++|||++|+.+.+..+
T Consensus 404 ~~~~g~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~nHD~~rl~~~~~g~ 483 (637)
T 1ji1_A 404 WTAQGNQWDAATNFDGFTQPVSEWITGKDYQNNSASISTTQFDSWLRGTRANYPTNVQQSMMNFLSNHDITRFATRSGGD 483 (637)
T ss_dssp GTTTSSSCSEEBCTTTTHHHHHHHHTSBCTTSCBCCCCHHHHHHHHHHHHTTSCHHHHTTCEEESCCTTSCCHHHHTTTC
T ss_pred hhccCCccceEEecHHHHHHHHHHhcCCccccccCCCCHHHHHHHHHHHHHhccccchhhceecccCCchhhHhhhcCCc
Confidence 33223456777887 4566666665431 12222211100000110 112468999999999988877656
Q ss_pred hhHHHHHHHHHhcCCCeeEEecCcccC--------------Cc-----hhHHHHHHHHHHHHHhCcccCCCCeEEEEecC
Q 015125 312 SNHIMEGYAYILMHPGIPSVFYDHFYD--------------WG-----DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQS 372 (413)
Q Consensus 312 ~~~~~la~a~ll~~pGiP~Iy~G~E~g--------------w~-----~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~ 372 (413)
..++++|++++||+||+||||||+|+| |+ .++++++|+|++||+++|+|+.|.++.+..++
T Consensus 484 ~~~~~~a~a~ll~~pG~P~iy~GdE~G~~~~~d~~~r~~~~W~~~~~~~~l~~~~~~Li~lRk~~~al~~g~~~~~~~~~ 563 (637)
T 1ji1_A 484 LWKTYLALIFQMTYVGTPTIYYGDEYGMQGGADPDNRRSFDWSQATPSNSAVALTQKLITIRNQYPALRTGSFMTLITDD 563 (637)
T ss_dssp HHHHHHHHHHHTTSSSEEEEETTGGGTCCCCSTTGGGCCCCTTSSSTTSHHHHHHHHHHHHHHHCHHHHHSEEEEEEEET
T ss_pred HHHHHHHHHHHHhCCCCceEEeeeccccCCCCCCcccCCCCCCcCCChHHHHHHHHHHHHHHhhChHhhcCceEEEEeCC
Confidence 788999999999999999999999975 43 37999999999999999999999999887765
Q ss_pred C--EEEEEE---CCEEEEEEcCCCCC------------CCCCCcEEeeeCCceE
Q 015125 373 N--LYSAII---GDKVCMKIGDGSWC------------PAGKEWTLATSGHKYA 409 (413)
Q Consensus 373 ~--~~~~~r---~~~~lv~lnn~~~~------------~~~~~~~~~~s~~~~~ 409 (413)
+ +++|.| ++.++|++|++... |.++.|++++++..+.
T Consensus 564 ~~~v~a~~R~~~~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 617 (637)
T 1ji1_A 564 TNKIYSYGRFDNVNRIAVVLNNDSVSHTVNVPVWQLSMPNGSTVTDKITGHSYT 617 (637)
T ss_dssp TTTEEEEEEECSSCEEEEEEECSSSCEEEEECGGGGTCCTTCEEEETTTCCEEE
T ss_pred CeEEEEEEEEcCCCEEEEEEECCCCCEEEecCccccccCCCceEEEeccCceEE
Confidence 4 599988 46899999985422 1246688877765543
|
| >3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-60 Score=495.13 Aligned_cols=349 Identities=15% Similarity=0.168 Sum_probs=257.3
Q ss_pred eeEEEeeecCCCCC-----ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCKH-----DWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-----g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.||||+|.++|++. |||+||+++|+|||+||||+|||+||++++. +|||+|.||++|+|+|||.++|++||++|
T Consensus 18 ~viYqi~~~~F~d~~~dg~Gdl~gi~~~Ldyl~~LGv~~i~l~Pi~~~~~~~~GY~~~dy~~id~~~Gt~~df~~lv~~~ 97 (589)
T 3aj7_A 18 ATFYQIYPASFKDSNDDGWGDMKGIASKLEYIKELGADAIWISPFYDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKT 97 (589)
T ss_dssp CCEEEECGGGSCCSSSSSSCCHHHHHHTHHHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHH
T ss_pred CeEEEEEhHHhcCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCcCcccccccccccCCHHHHHHHHHHH
Confidence 69999999999763 7999999999999999999999999999986 68999999999999999999999999999
Q ss_pred HHcCCEEEEEEccccCcCCCCCCC-------Ccccc---cCCC-----------CCCCCCCC---eeccCCCCCCCcCCC
Q 015125 100 KQHKVRAMADIVINHRVGTTQGHG-------GKYNR---YDGI-----------PLSWDEHA---VTSCTGGLGNGSTGD 155 (413)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~~-------~~y~~---~~~~-----------~~~~~~~~---~~~~~~~~~~~~~~~ 155 (413)
|++||+||||+|+||++.+|+|+. +.|.. +.+. +..|.... ...+....+......
T Consensus 98 h~~Gi~VilD~V~NH~~~~~~wf~~~~~~~~~~y~d~y~~~~~~~~~~~g~~~~p~~~~~~f~g~~w~~~~~~~~~y~~~ 177 (589)
T 3aj7_A 98 HKLGMKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFDEKTQEFYLRL 177 (589)
T ss_dssp HHTTCEEEEEECCSBCCTTSHHHHHHTTCSSSTTGGGBCEECCSEECTTSCEECSSCBBCTTSSBSEEEETTTTEEEECS
T ss_pred HHCCCEEEEEecccccccchhHHHHHhcCCCCCCCCceeecCCcccccccCCCCCCcccccCCCccceecCCCCeEEECc
Confidence 999999999999999999987532 22221 1110 11111100 000000000111122
Q ss_pred CCCCCCcCCCCCHHHHHHHHH-HHHHHHhhcCCCeEeecccCCCc------------------------------HHHHH
Q 015125 156 NFHGVPNIDHTQHFVRKDIIA-WLRWLRNTVGFQDFRFDFARGYS------------------------------AKYVK 204 (413)
Q Consensus 156 ~~~~~~dln~~~~~vr~~l~~-~~~~w~~~~gvDGfR~D~a~~i~------------------------------~~~~~ 204 (413)
....+||||++||+||++|++ ++++|+ ++||||||+|+++++. .+||+
T Consensus 178 f~~~~pdLN~~np~Vr~~l~~~~~~~Wl-~~gvDGfRlDa~~~i~~~~~~~d~~~~~~~~~~~~~~~~~~n~~~~~~~l~ 256 (589)
T 3aj7_A 178 FCSTQPDLNWENEDCRKAIYESAVGYWL-DHGVDGFRIDVGSLYSKVVGLPDAPVVDKNSTWQSSDPYTLNGPRIHEFHQ 256 (589)
T ss_dssp SSTTCCBBCTTCHHHHHHHHHHHTHHHH-HTTCCEEEETTGGGSCCCTTCCCCCCCCTTCSSBCCHHHHSSCTTHHHHHH
T ss_pred cCCCCCccCCCCHHHHHHHHHHHHHHHH-hcCCCEEEEccccccccccCCCcCCccccccccccccccccccHHHHHHHH
Confidence 236799999999999999999 999999 5899999999998873 36888
Q ss_pred HHHH----hhC---CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccC-CCcccccCccchHHHHHHhcc-------
Q 015125 205 EYIE----GAR---PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGT-GQLSAAFDFTTKGILQEAVKG------- 269 (413)
Q Consensus 205 ~~~~----~~~---~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~df~~~~~l~~~~~g------- 269 (413)
++.+ .++ +.++|||+|... ...+..|.... .++.+.|+|.+. ..+...+
T Consensus 257 ~~~~~~~~~v~~~~~~~~vgE~~~~~--------------~~~~~~y~~~~~~~~~~~f~f~~~--~~~~~~~~~~~~~~ 320 (589)
T 3aj7_A 257 EMNQFIRNRVKDGREIMTVGEMQHAS--------------DETKRLYTSASRHELSELFNFSHT--DVGTSPLFRYNLVP 320 (589)
T ss_dssp HHHHHHHHHCSSCCCCEEEEEEECCC--------------HHHHHHHHCGGGCSCSEEEECHHH--HTTEETTEEEEECC
T ss_pred HHHHHHHHHhccCCCeEEEEEeCCCC--------------HHHHHHhhccCCCccceeeehhhh--hhhcccccccccCC
Confidence 8887 664 378899999752 24456676542 346677776542 1111111
Q ss_pred -chhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCC-----hhHHHHHHHHHhcCCCeeEEecCcccC-----
Q 015125 270 -QFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFP-----SNHIMEGYAYILMHPGIPSVFYDHFYD----- 338 (413)
Q Consensus 270 -~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~-----~~~~~la~a~ll~~pGiP~Iy~G~E~g----- 338 (413)
+...+...+......+...+...++|++|||++|+.+.++.+ ..+++++++++||+||+|+||||+|+|
T Consensus 321 ~~~~~l~~~l~~~~~~~~~~~~~~~~fl~NHD~~R~~~~~~~~~~~~~~~~~k~~~~~llt~pG~P~iy~G~E~G~~~~~ 400 (589)
T 3aj7_A 321 FELKDWKIALAELFRYINGTDCWSTIYLENHDQPRSITRFGDDSPKNRVISGKLLSVLLSALTGTLYVYQGQELGQINFK 400 (589)
T ss_dssp CCHHHHHHHHHTTTGGGTTSSCCCEECSCCTTSCCHHHHHSCCSTTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCC
T ss_pred CCHHHHHHHHHHHHHhcccCCCcccccccCCCCcchHHHhCCCchhhHHHHHHHHHHHHHHCCCCcEEEcChhcccCCCC
Confidence 122333322211111111234578999999999988766543 357899999999999999999999975
Q ss_pred C--------------------------------------------------c--h-------------------------
Q 015125 339 W--------------------------------------------------G--D------------------------- 341 (413)
Q Consensus 339 w--------------------------------------------------~--~------------------------- 341 (413)
| + .
T Consensus 401 ~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~rd~~R~pm~W~~~~~~~GFs~~~~~pwl~~~~~~~~~~n 480 (589)
T 3aj7_A 401 NWPVEKYEDVEIRNNYNAIKEEHGENSEEMKKFLEAIALISRDHARTPMQWSREEPNAGFSGPSAKPWFYLNDSFREGIN 480 (589)
T ss_dssp SCCGGGCCCHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHCGGGGTSCCCCCSCTTTTTSSCTTCCCSSCCCGGGGGTCS
T ss_pred CCCHHHhcCHHhhhhhHHHhhcCCcccchhhhhhhhhcccCCCCCccceecCCCCCCCCCCCCCCCCCccCCcccccccc
Confidence 2 0 0
Q ss_pred ---------hHHHHHHHHHHHHHhCcccC-C-CCeEEEEecC-CEEEEEE---CCEEEEEEcCCC
Q 015125 342 ---------SIHNQIVKLMDVRRQQDIHS-R-SSIKILEAQS-NLYSAII---GDKVCMKIGDGS 391 (413)
Q Consensus 342 ---------~l~~~i~~L~~lR~~~p~l~-~-G~~~~~~~~~-~~~~~~r---~~~~lv~lnn~~ 391 (413)
+++.++|+|++||+++|+|. . |+++.+..++ ++++|.| +++++|++|.+.
T Consensus 481 v~~q~~d~~Sl~~~yr~Li~lRk~~~~l~~~~G~~~~~~~~~~~v~ay~R~~~~~~~lvv~N~s~ 545 (589)
T 3aj7_A 481 VEDEIKDPNSVLNFWKEALKFRKAHKDITVYGYDFEFIDLDNKKLFSFTKKYNNKTLFAALNFSS 545 (589)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHTHHHHTSCEEEEEESTTCSSEEEEEEEETTEEEEEEEECSS
T ss_pred HHHHhhCCCcHHHHHHHHHHHHhcChhhhccCCceEEEecCCCcEEEEEEEcCCCEEEEEEeCCC
Confidence 28999999999999999999 8 9999887665 8999998 467888888865
|
| >2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-59 Score=488.19 Aligned_cols=350 Identities=17% Similarity=0.262 Sum_probs=254.1
Q ss_pred eeEEEeeecCCCC-----CccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCK-----HDWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 26 ~~i~~~f~~~~~~-----~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.||||+|.++|++ -|||+||+++|+|||+||||+|||+||++++. +|||+|.||++|+|+|||.++|++||++|
T Consensus 9 ~viYqi~~~~F~d~~~dg~Gd~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~~gY~~~dy~~id~~~Gt~~d~~~lv~~~ 88 (555)
T 2ze0_A 9 GVAYQIYPRSFMDANGDGIGDLRGIIEKLDYLVELGVDIVWICPIYRSPNADNGYDISDYYAIMDEFGTMDDFDELLAQA 88 (555)
T ss_dssp CCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTCSCSEEEEECGGGCCHHHHHHHHHHH
T ss_pred CcEEEEEchHhcCCCCCCcCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCcCcccccccCcccCCHHHHHHHHHHH
Confidence 6999999999986 38999999999999999999999999999986 69999999999999999999999999999
Q ss_pred HHcCCEEEEEEccccCcCCCCCC-------CCcc---cccCCC-----CCCCCCCC---eeccCCCCCCCcCCCCCCCCC
Q 015125 100 KQHKVRAMADIVINHRVGTTQGH-------GGKY---NRYDGI-----PLSWDEHA---VTSCTGGLGNGSTGDNFHGVP 161 (413)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~-------~~~y---~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 161 (413)
|++||+||||+|+||++.+|+|+ .+.| +.+.+. +.+|.... ...+....+..........+|
T Consensus 89 h~~Gi~vilD~V~NH~~~~~~~f~~~~~~~~~~~~~~y~~~~~~~g~~p~~~~~~f~~~~w~~~~~~~~~~~~~f~~~~p 168 (555)
T 2ze0_A 89 HRRGLKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRDGKDGREPNNWESIFGGSAWQYDERTGQYYLHIFDVKQP 168 (555)
T ss_dssp HHTTCEEEEEEECSBCCTTSHHHHHHHHCSSSTTGGGBCEECCBTTBCSSCEECTTSSBSEEEETTTTEEEECSSCTTCC
T ss_pred HHCCCEEEEEEecccccchhhHHHHhhcCCCCCccccccccCCCCCCCCCcccccCCCccceecCCCCceeecccCccCC
Confidence 99999999999999999998753 2222 112110 11111100 000000001111122346789
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcH-----------------------------HHHHHHHHhhC-
Q 015125 162 NIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA-----------------------------KYVKEYIEGAR- 211 (413)
Q Consensus 162 dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~-----------------------------~~~~~~~~~~~- 211 (413)
|||++||+||++|++++++|+ ++||||||+|+|++++. ++++++.++++
T Consensus 169 dLn~~np~V~~~l~~~~~~W~-~~gvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~ 247 (555)
T 2ze0_A 169 DLNWENSEVRQALYEMVNWWL-DKGIDGFRIDAISHIKKKPGLPDLPNPKGLKYVPSFAGHMNQPGIMEYLRELKEQTFA 247 (555)
T ss_dssp BBCTTCHHHHHHHHHHHHHHH-HHTCCEEEEESGGGSSCCTTCCCCC----CCSEECHHHHSSCTTHHHHHHHHHHHTGG
T ss_pred ccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEccccccccccccccCCcccccccccccccccCcHHHHHHHHHHHHHhhc
Confidence 999999999999999999999 69999999999987753 57888877543
Q ss_pred --CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhcc-CCCcccccCccchHHHHHH--hccchhhhhhhcCCCCCccc
Q 015125 212 --PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQEA--VKGQFWRLRDAQGKPPGVMG 286 (413)
Q Consensus 212 --~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~df~~~~~l~~~--~~g~~~~~~~~~~~~~~~~~ 286 (413)
+.+++||+|... ...+..|+.. .++++++|+|.+....... -..+...+...+.......
T Consensus 248 ~~~~~~vgE~~~~~--------------~~~~~~y~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 312 (555)
T 2ze0_A 248 RYDIMTVGEANGVT--------------VDEAEQWVGEENGVFNMIFQFEHLGLWERRADGSIDVRRLKRTLTKWQKGL- 312 (555)
T ss_dssp GSSCEEEEECTTCC--------------TTTTHHHHCSSSCSCSEEECCTTCCCCCCCC--CCCHHHHHHHHHHHHHHH-
T ss_pred cCCeEEEeccCCCC--------------HHHHHHHhccccccccceeehHHHhhhhccccCCCCHHHHHHHHHHHHhhc-
Confidence 478999999542 1344566653 3457788888754210000 0001111211110000000
Q ss_pred ccCCcceecccCCCCCcCCCCCCCCh----hHHHHHHHHHhcCCCeeEEecCcccCCc----------------------
Q 015125 287 WWPSRAVTFLDNHDTGSTQAHWPFPS----NHIMEGYAYILMHPGIPSVFYDHFYDWG---------------------- 340 (413)
Q Consensus 287 ~~p~~~v~flenHD~~R~~~~~~~~~----~~~~la~a~ll~~pGiP~Iy~G~E~gw~---------------------- 340 (413)
......++|++|||++|+.+.++... .+++++++++||+||+|+||||+|+|..
T Consensus 313 ~~~~~~~~fl~NHD~~R~~s~~g~~~~~~~~~~k~~~~~l~t~pG~P~iy~G~E~G~~~~~~~~~~~~~d~~~~~~~~~~ 392 (555)
T 2ze0_A 313 ENRGWNALFLENHDLPRSVSTWGNDRDYWAESAKALGALYFFMQGTPFIYQGQEIGMTNVRFDDIRDYRDVSALRLYELE 392 (555)
T ss_dssp TTTCCBEECSCCTTSCCHHHHTSCSSSSHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCCSSGGGCCSHHHHC-----
T ss_pred cCCCceeeeecCCCCcchhhhhCCchhhhHHHHHHHHHHHHhCCCceEEEeceecCcCCCCCCCHHHccCHHhhcchhhh
Confidence 01234578999999999877665332 2589999999999999999999997521
Q ss_pred -------------------------------------------------------------hhHHHHHHHHHHHHHhCcc
Q 015125 341 -------------------------------------------------------------DSIHNQIVKLMDVRRQQDI 359 (413)
Q Consensus 341 -------------------------------------------------------------~~l~~~i~~L~~lR~~~p~ 359 (413)
.+++.++|+|++||+++|+
T Consensus 393 ~~~g~~~~~~~~~~~~~~rd~~R~pm~W~~~~~~gFs~~~pWl~~~~~~~~~nv~~q~~~~~s~~~~y~~Li~lRk~~~a 472 (555)
T 2ze0_A 393 RAKGRTHEEAMTIIWKTGRDNSRTPMQWSGASNAGFTTGTPWIKVNENYRTINVEAERRDPNSVWSFYRQMIQLRKANEL 472 (555)
T ss_dssp ------------CHHHHCGGGGTSCCCCCSSGGGGSCSSCCSSCCCGGGGTSSHHHHHHCTTSHHHHHHHHHHHHHHCTH
T ss_pred hhcCCcHHHHHhhhhcccCCCCcCCcccCCCCCCCCcCCCCCccCCCcccccCHHHHhhccccHHHHHHHHHHHHcCCch
Confidence 2588999999999999999
Q ss_pred cCCCCeEEEE-ecCCEEEEEE---CCEEEEEEcCCC
Q 015125 360 HSRSSIKILE-AQSNLYSAII---GDKVCMKIGDGS 391 (413)
Q Consensus 360 l~~G~~~~~~-~~~~~~~~~r---~~~~lv~lnn~~ 391 (413)
|+.|+++.+. .++++++|.| +++++|++|.+.
T Consensus 473 l~~G~~~~~~~~~~~v~a~~R~~~~~~~lvv~N~s~ 508 (555)
T 2ze0_A 473 FVYGTYDLLLENHPSIYAYTRTLGRDRALVVVNLSD 508 (555)
T ss_dssp HHHSEEEEESTTCSSEEEEEEEETTEEEEEEEECSS
T ss_pred hhccceEEeecCCCcEEEEEEEcCCceEEEEEECCC
Confidence 9999999874 4567999998 457888888865
|
| >3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-58 Score=486.72 Aligned_cols=353 Identities=14% Similarity=0.145 Sum_probs=260.4
Q ss_pred ccc-cCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC---CCCCCCcccCCCCCCCCCCHHHHHH
Q 015125 19 AVI-RNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF---APEGYLPQNLYSLNSSYGSEHLLKA 94 (413)
Q Consensus 19 ~~~-~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~---~~~gY~~~d~~~id~~~Gt~~~~~~ 94 (413)
|.| +....||||++..+|. |+|+||+++|+|||+||||+|||+||++++ ++|||+|.||++|+|+|||.+||++
T Consensus 83 ~~W~~~~~~viY~i~~~~F~--Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~~~GY~~~dy~~vdp~~Gt~~df~~ 160 (644)
T 3czg_A 83 AGWFGQPHMLGYSAYADRFA--GTLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVA 160 (644)
T ss_dssp TTGGGSTTCCEEEECHHHHH--SSHHHHHHTHHHHHHHTCCEEEECCCBCBCSSCCTTTTSBSCTTSBCGGGCCHHHHHH
T ss_pred CccccCCCcEEEEEechhhC--CCHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCCcCcccccccCcccCCHHHHHH
Confidence 344 4434799999998876 899999999999999999999999999987 5799999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEEccccCcCCCCCCC------Cccccc---CCC---CCCCCC---CCe-------eccCCCCCCCc
Q 015125 95 LLHKMKQHKVRAMADIVINHRVGTTQGHG------GKYNRY---DGI---PLSWDE---HAV-------TSCTGGLGNGS 152 (413)
Q Consensus 95 Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~------~~y~~~---~~~---~~~~~~---~~~-------~~~~~~~~~~~ 152 (413)
||++||++||+||+|+|+||++.+|+|+. +.|.+| .+. +.+|.. ..+ ..+.+..+...
T Consensus 161 Lv~~aH~~GI~VilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~p~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 240 (644)
T 3czg_A 161 LTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVPDRYEATLGQVFPHTAPGNFTWVDDTAQWM 240 (644)
T ss_dssp HHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCHHHHTTBCEESSSHHHHHHHHHCCCC------CCEEEETTTTEEE
T ss_pred HHHHHHHCCCEEEEEEecCCcccchhhHHHHhcCCCcccCceecCCCCCCCcchhhcccccCCCCCCCCccccCCCCceE
Confidence 99999999999999999999999987643 123211 110 001110 000 00000001001
Q ss_pred CCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc-------------HHHHHHHHHhhC---C-CeE
Q 015125 153 TGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-------------AKYVKEYIEGAR---P-IFS 215 (413)
Q Consensus 153 ~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~-------------~~~~~~~~~~~~---~-~~~ 215 (413)
.......+||||++||+||++|++++++|+ ++||||||+|+++++. .++|+++.+.++ | .++
T Consensus 241 ~~~f~~~~pdLN~~np~V~~~i~~~~~~wl-~~GvDGfRlDa~~~i~~~~~~~~~n~p~~~~~l~~~r~~~~~~~p~~~l 319 (644)
T 3czg_A 241 WTTFYPYQWDLNWSNPAVFGDMALAMLRLA-NLGVEAFRLDSTAYLWKRIGTDCMNQSEAHTLLVALRAVTDIVAPAVVM 319 (644)
T ss_dssp ECSSSTTEEEBCTTSHHHHHHHHHHHHHHH-HTTEEEEEEETGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred ecccccCCCcCCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecccccccccCCcccCcHHHHHHHHHHHHHHHHhCCCeEE
Confidence 111236789999999999999999999999 8999999999999874 468888876653 4 789
Q ss_pred EEcccCCCCCCCCCCCCccchhhHhHhhhhccC----CCcccccCccchHHHHHHh-ccchhhhhhhcCCCCCcccccCC
Q 015125 216 VGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGT----GQLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPS 290 (413)
Q Consensus 216 vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~df~~~~~l~~~~-~g~~~~~~~~~~~~~~~~~~~p~ 290 (413)
|||+|.. ...+..|+... .+++++|+|.+...+..++ .++...+...+...... ..+.
T Consensus 320 igE~~~~---------------~~~~~~y~~~~~~~~~~~~~~ynf~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~ 382 (644)
T 3czg_A 320 KAEAIVP---------------MTQLPPYFGSGVDEGHECHLAYHSTLMAAGWSALALQRGDILHNVIAHSPPL--PRHC 382 (644)
T ss_dssp EEECCSC---------------GGGSGGGGCCGGGTTSSCSEEECHHHHHHHHHHHHHTCTHHHHHHHHTCCCC--CTTC
T ss_pred EEEecCC---------------HHHHHHhhCCCcccccccceeechHHHHHHHHHhccCCHHHHHHHHHhhhcc--CCCC
Confidence 9999964 23445666432 3578899998877666655 44443444333211111 1123
Q ss_pred cceecccCCCCC--------------------cCCCCC---------------------------------C-------C
Q 015125 291 RAVTFLDNHDTG--------------------STQAHW---------------------------------P-------F 310 (413)
Q Consensus 291 ~~v~flenHD~~--------------------R~~~~~---------------------------------~-------~ 310 (413)
..++|++|||+. |+.+.+ + .
T Consensus 383 ~~~nfl~nHD~~~~~~~~~~~~~~g~~~~~~~r~~~~~~~g~~~~s~~~G~~y~~N~t~d~Ri~g~las~~g~~~a~~~~ 462 (644)
T 3czg_A 383 AWLSYVRCHDDIGWNVLQHEACGNAAQPPFSLRDVARFYANAVPGSYARGESFQSSGDGVHGTNGMAAALAGIQAAQEAG 462 (644)
T ss_dssp EEEEESCCSSCBCGGGGHHHHTCCSSSCCCCHHHHHHHHTTCSTTCCCCCEEC-----CCCCEECCHHHHHTHHHHHHTT
T ss_pred eeeEEeccCcccccccchhhhhhccccchhhHHHHHHhhcCCCCcccccCcccccCCccccccccccccccchhhhhccc
Confidence 578999999963 221100 0 0
Q ss_pred C-------hhHHHHHHHHHhcCCCeeEEecCcccCC--------------------------c------------hhHHH
Q 015125 311 P-------SNHIMEGYAYILMHPGIPSVFYDHFYDW--------------------------G------------DSIHN 345 (413)
Q Consensus 311 ~-------~~~~~la~a~ll~~pGiP~Iy~G~E~gw--------------------------~------------~~l~~ 345 (413)
+ ..++++|++++|++||+|+||||+|+|. + .++++
T Consensus 463 d~~~~~~~~~r~~la~a~llt~pG~P~IY~GdE~G~~~~~~~~~dp~~~~~~R~~~R~~m~W~~~~~~~~~~~~~~~l~~ 542 (644)
T 3czg_A 463 DAAALAVAVDRLVLLYAIALAMPGVPLIYMGDELAMVNDPGYRDDPHRQHEGRWLHRPAMDWQLAAQRHDAKSLSGTVYR 542 (644)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSSEEEEEETTGGGTCCCCGGGGGSGGGTTCGGGGGCCCCCHHHHHGGGCTTSHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHcCCcceEEcchhhcCCCCcccccChhhcccccccCCCCCCcchhhhccCCcccHHHHHH
Confidence 0 2467999999999999999999999752 1 13889
Q ss_pred HHHHHHHHHHhCcccCCC-CeEEEEec-CCEEEEEECCEEEEEEcCCC
Q 015125 346 QIVKLMDVRRQQDIHSRS-SIKILEAQ-SNLYSAIIGDKVCMKIGDGS 391 (413)
Q Consensus 346 ~i~~L~~lR~~~p~l~~G-~~~~~~~~-~~~~~~~r~~~~lv~lnn~~ 391 (413)
++|+|++||+++|+|+.| .++.+..+ +++++|.|++.++|++|.++
T Consensus 543 ~~~~Li~lRk~~pal~~g~~~~~l~~~~~~vlaf~R~~~~lvv~N~s~ 590 (644)
T 3czg_A 543 RLRGLIRQRAALGALAADQALASIALNDPRVFALTRGDSFIALHNFSD 590 (644)
T ss_dssp HHHHHHHHHHTCGGGSTTSCEEEECCSCTTEEEEEETTTEEEEEECSS
T ss_pred HHHHHHHHHHhCccccCCCeeEEEecCCCCEEEEEECCeEEEEEECCC
Confidence 999999999999999988 89888765 68999999778999999865
|
| >1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-57 Score=476.78 Aligned_cols=368 Identities=13% Similarity=0.133 Sum_probs=268.2
Q ss_pred cccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC---CCCCCCcccCCCCCCCCCCHHHHHHHH
Q 015125 20 VIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF---APEGYLPQNLYSLNSSYGSEHLLKALL 96 (413)
Q Consensus 20 ~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~---~~~gY~~~d~~~id~~~Gt~~~~~~Lv 96 (413)
-++....||||++.+.|. |+|+||+++|+|||+||||+|||+||++++ ++|||+|.||++|+|+|||.+||++||
T Consensus 92 W~~~~~~viY~~~~~~f~--Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~~~GY~v~dy~~vdp~~Gt~~d~~~Lv 169 (628)
T 1g5a_A 92 WILSNKQVGGVCYVDLFA--GDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVI 169 (628)
T ss_dssp GGGCTTCCEEEECHHHHH--SSHHHHHTTHHHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBCTTTCCHHHHHHHH
T ss_pred cccCCCcEEEEEchhhhC--CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCcCCcccCCcCccCCCHHHHHHHH
Confidence 355555799999988775 889999999999999999999999999987 479999999999999999999999999
Q ss_pred HHHHHcCCEEEEEEccccCcCCCCCCC------Cccccc---CCC---CCCCCCCCeeccC----CCCC----CCc-CCC
Q 015125 97 HKMKQHKVRAMADIVINHRVGTTQGHG------GKYNRY---DGI---PLSWDEHAVTSCT----GGLG----NGS-TGD 155 (413)
Q Consensus 97 ~~~h~~Gi~VilD~V~NH~~~~~~~~~------~~y~~~---~~~---~~~~~~~~~~~~~----~~~~----~~~-~~~ 155 (413)
++||++||+||+|+|+||++.+|+|+. +.|..| .+. +..|.......+. ..+. ..+ ...
T Consensus 170 ~~ah~~GI~VilD~V~NH~s~~~~wf~~~~~g~~~y~d~y~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 249 (628)
T 1g5a_A 170 AALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGGFSQLEDGRWVWTT 249 (628)
T ss_dssp HHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCGGGTTSBCEESSSHHHHHHTTTCCCSSTTTCSTTEEECTTSCEEECS
T ss_pred HHHHHCCCEEEEEEecCcccccchhHHHHhcCCCccccccccCCCCCCcccccccccccCCCCCCCccccCCCCCEEecc
Confidence 999999999999999999999997542 223211 100 0012100000000 0000 011 112
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc-------------HHHHHHHHHhh---CC-CeEEEc
Q 015125 156 NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-------------AKYVKEYIEGA---RP-IFSVGE 218 (413)
Q Consensus 156 ~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~-------------~~~~~~~~~~~---~~-~~~vgE 218 (413)
....+||||++||+||++|++++++|+ ++||||||+|+++++. .++|+++.+.+ +| .++|||
T Consensus 250 f~~~~pdLN~~np~V~~~i~~~l~~w~-~~GvDGfRlDa~~~i~k~~g~~~~~~p~~~~~~~~~r~~~~~~~p~~~~igE 328 (628)
T 1g5a_A 250 FNSFQWDLNYSNPWVFRAMAGEMLFLA-NLGVDILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMRIAAPAVFFKSE 328 (628)
T ss_dssp SSTTEEEBCTTSHHHHHHHHHHHHHHH-TTTCSEEEETTGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred CCCCCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecccccccccCccccCcHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 235789999999999999999999999 8999999999999873 46888887654 35 789999
Q ss_pred ccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHh-ccchhhhhhhcCCCCCcccccCCcceeccc
Q 015125 219 YWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLD 297 (413)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~-~g~~~~~~~~~~~~~~~~~~~p~~~v~fle 297 (413)
+|.. ...+..|+.. ++++++|+|.+...+..++ .++...+...+...... ..+...++|++
T Consensus 329 ~~~~---------------~~~~~~y~~~-~~~~~~y~f~l~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~nfl~ 390 (628)
T 1g5a_A 329 AIVH---------------PDQVVQYIGQ-DECQIGYNPLQMALLWNTLATREVNLLHQALTYRHNL--PEHTAWVNYVR 390 (628)
T ss_dssp CCSC---------------HHHHGGGBST-TSBSEEECHHHHHHHHHHHHHCCCHHHHHHHHHSCCC--CTTCEEEEESC
T ss_pred ecCC---------------HHHHHHhhCC-CCcceeecHHHHHHHHHhhccCCHHHHHHHHHHhhcc--cCCCeeEeehh
Confidence 9964 3566778764 3578999999877776665 34443333322110010 01225689999
Q ss_pred CCCCC--------------------cCCCC----------------C-C-----------------------CChhHHHH
Q 015125 298 NHDTG--------------------STQAH----------------W-P-----------------------FPSNHIME 317 (413)
Q Consensus 298 nHD~~--------------------R~~~~----------------~-~-----------------------~~~~~~~l 317 (413)
|||+. |+.+. . + ....++++
T Consensus 391 nHD~i~~~~~~~~~~~~g~~~~~~~r~l~~~~~g~~~~s~~~g~~~~~n~d~~d~Ri~~~~as~~g~~~~~~~~~~~~~l 470 (628)
T 1g5a_A 391 SHDDIGWTFADEDAAYLGISGYDHRQFLNRFFVNRFDGSFARGVPFQYNPSTGDCRVSGTAAALVGLAQDDPHAVDRIKL 470 (628)
T ss_dssp CSSCBCCCCCHHHHHHTTCCHHHHHHHHHHHHTTCSTTCCCCCEEECCCTTTCCCEEECCHHHHHTGGGTCTTHHHHHHH
T ss_pred ccccccccccchhhhhccccchhHHHHHHHHhcCccccccccccccccCccchhhhhccccccccccccchhhHHHHHHH
Confidence 99962 21000 0 0 01247899
Q ss_pred HHHHHhcCCCeeEEecCcccCCc--------------------------------------hhHHHHHHHHHHHHHhCcc
Q 015125 318 GYAYILMHPGIPSVFYDHFYDWG--------------------------------------DSIHNQIVKLMDVRRQQDI 359 (413)
Q Consensus 318 a~a~ll~~pGiP~Iy~G~E~gw~--------------------------------------~~l~~~i~~L~~lR~~~p~ 359 (413)
|++++|++||+|+||||+|+|.. .++++++|+|++||+++|+
T Consensus 471 a~a~llt~pG~P~IY~G~EiG~~~~~~~~~dp~~~~~~R~~~R~~~~W~~~~~~~~~~~~~~~l~~~~~~Li~lRk~~pa 550 (628)
T 1g5a_A 471 LYSIALSTGGLPLIYLGDEVGTLNDDDWSQDSNKSDDSRWAHRPRYNEALYAQRNDPSTAAGQIYQDLRHMIAVRQSNPR 550 (628)
T ss_dssp HHHHHHHSSSEEEEETTGGGTCCCCSSGGGCTTTTTCGGGGGCCCCCHHHHTTTTCTTSHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhCCCCcEEEecccccCCCCcccccCchhcccCcccCCCCCCcchhhhccCCCCcHHHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999997521 2488999999999999999
Q ss_pred cCCCCeEEEEec-CCEEEEEECCEEEEEEcCCCCC-----CC----CCCcEEeeeCCce
Q 015125 360 HSRSSIKILEAQ-SNLYSAIIGDKVCMKIGDGSWC-----PA----GKEWTLATSGHKY 408 (413)
Q Consensus 360 l~~G~~~~~~~~-~~~~~~~r~~~~lv~lnn~~~~-----~~----~~~~~~~~s~~~~ 408 (413)
|+.|.++.+..+ +++++|.|..+++|++|.+... +. .+.|+++++|..+
T Consensus 551 l~~g~~~~l~~~~~~v~af~R~~~~lvv~N~s~~~~~~~l~~~~~~~~~~~~lls~~~~ 609 (628)
T 1g5a_A 551 FDGGRLVTFNTNNKHIIGYIRNNALLAFGNFSEYPQTVTAHTLQAMPFKAHDLIGGKTV 609 (628)
T ss_dssp GCSSCCEECCCSCTTEEEEEETTTEEEEEECSSSCEEECTTTTTTSCSEEEETTTCCEE
T ss_pred ccCCceEEEecCCCcEEEEEEeCcEEEEEeCCCCcEEEecccccccCCceeEeecCCcc
Confidence 999999988776 5899999965788899986532 11 1236677776543
|
| >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-58 Score=462.34 Aligned_cols=350 Identities=15% Similarity=0.224 Sum_probs=249.6
Q ss_pred CceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-----------CCCCCCcccCCCCCCCCCCHHHH
Q 015125 24 GREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF-----------APEGYLPQNLYSLNSSYGSEHLL 92 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-----------~~~gY~~~d~~~id~~~Gt~~~~ 92 (413)
.++||||+|+|+ |++|+++|+|||+||||+|||+||++.. .+|||+|.||+.++|+||+++||
T Consensus 4 ~~~~~~q~f~~~------~~~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~~~~~gY~~~~y~~~~~~~G~~~d~ 77 (422)
T 1ua7_A 4 KSGTILHAWNWS------FNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEF 77 (422)
T ss_dssp TTSCEEECTTBC------HHHHHHTHHHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEETTTEEHHHH
T ss_pred cCcEEEEEecCC------HHHHHHHHHHHHHcCCCEEEeCCccccccCCcCcCccCCccccccceeeeccCCCCCCHHHH
Confidence 347999999998 9999999999999999999999998743 16899999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCC-C-CeeccCCCCCCCcCCCCCCCCCcCCCCCHHH
Q 015125 93 KALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDE-H-AVTSCTGGLGNGSTGDNFHGVPNIDHTQHFV 170 (413)
Q Consensus 93 ~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v 170 (413)
++||++||++||+||+|+|+||++.++++........ .+|.. . ....+.+.+ ....+.+.++|+||+++|+|
T Consensus 78 ~~lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~dln~~~~~v 151 (422)
T 1ua7_A 78 KEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSI----PNWTHGNTQIKNWSDRW--DVTQNSLLGLYDWNTQNTQV 151 (422)
T ss_dssp HHHHHHHHTTTCEEEEEECCSBCCSCTTTSCHHHHTS----TTCEEECCBCCCTTCHH--HHHHSBBTTBCEECTTSHHH
T ss_pred HHHHHHHHHCCCEEEEEeccCcccCCccccCccccCC----cccccCCCCCCCcCchh--cccccccCCCCccccCCHHH
Confidence 9999999999999999999999999987653211100 11110 0 001111100 01234567899999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEeecccCCCc--------HHHHHHHHHhhCCCeEEEcccCCCCCCCCCCCCccchhhHhHh
Q 015125 171 RKDIIAWLRWLRNTVGFQDFRFDFARGYS--------AKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRII 242 (413)
Q Consensus 171 r~~l~~~~~~w~~~~gvDGfR~D~a~~i~--------~~~~~~~~~~~~~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~ 242 (413)
|++|++++++|+ ++||||||+|+|++++ .+||+++.. -.+.+++||+|.++. ..+.
T Consensus 152 ~~~l~~~~~~w~-~~gvDGfR~D~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~vgE~~~~~~--------------~~~~ 215 (422)
T 1ua7_A 152 QSYLKRFLERAL-NDGADGFRFDAAKHIELPDDGSYGSQFWPNITN-TSAEFQYGEILQDSA--------------SRDA 215 (422)
T ss_dssp HHHHHHHHHHHH-HTTCCEEEETTGGGSCCTTSGGGCCSHHHHHTC-SSCSEEEECCCCSTT--------------CCHH
T ss_pred HHHHHHHHHHHH-HcCCCEEEEEhhhhcCccchhhhHHHHHHHhhc-CCCceEEEEeecCCC--------------ccHH
Confidence 999999999999 7999999999999986 579988872 224789999997521 1234
Q ss_pred hhhccCCCcccccCccchHHHHHHhccchhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCC--CCCChhHHHHHHH
Q 015125 243 NWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAH--WPFPSNHIMEGYA 320 (413)
Q Consensus 243 ~~~~~~~~~~~~~df~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~--~~~~~~~~~la~a 320 (413)
.|.+.. .+.+|.+...+++++.+....+...... . ....|.++++|++|||+.|.... ...+..++++|++
T Consensus 216 ~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~-~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~~la~a 288 (422)
T 1ua7_A 216 AYANYM----DVTASNYGHSIRSALKNRNLGVSNISHY--A-SDVSADKLVTWVESHDTYANDDEESTWMSDDDIRLGWA 288 (422)
T ss_dssp HHHTTS----EEECHHHHHHHHHHHHHTCCCHHHHSSC--S-SSSCGGGEEECSSCHHHHHSTTCSSTTCCHHHHHHHHH
T ss_pred HHhhcC----CcchhHHHHHHHHHHhCCCcCHHHHhhc--c-ccCChhheeEEEecCCCCCCCccccccCCHHHHHHHHH
Confidence 554432 3455666677777774332112221111 1 13346678999999999987632 2235568899999
Q ss_pred HHhc-CCCeeEEecCcccCCc--------------hhHHHHHHHHHHHHHhCcccCCCCeEEEEe---cCCEEEEEECCE
Q 015125 321 YILM-HPGIPSVFYDHFYDWG--------------DSIHNQIVKLMDVRRQQDIHSRSSIKILEA---QSNLYSAIIGDK 382 (413)
Q Consensus 321 ~ll~-~pGiP~Iy~G~E~gw~--------------~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~---~~~~~~~~r~~~ 382 (413)
++++ .||+|+||||+|+|-. ..++. .+.|.++|+.++++. |+...+.. ++++++|.|+++
T Consensus 289 ~ll~~~~G~P~iy~G~E~g~~~~~~p~~~~~~~~~~~~~~-~~~l~~l~~~~~al~-g~~~~~~~~~~~~~v~af~R~~~ 366 (422)
T 1ua7_A 289 VIASRSGSTPLFFSRPEGGGNGVRFPGKSQIGDRGSALFE-DQAITAVNRFHNVMA-GQPEELSNPQGNNQIFMNQRGSH 366 (422)
T ss_dssp HHHTSSSSEEEEECCCTTCBTTBSCCSSCBTBSCCCGGGG-CHHHHHHHHHHHHHT-TCCCCEECGGGCTTEEEEEETTT
T ss_pred HHHhCCCCeeEEecCcccCCCCCCCCccCcCCCCCCchhh-CHHHHHHHHHHHhcC-CCceEEEeeCCCceEEEEEcCCc
Confidence 9999 5899999999997521 23441 244555554444564 55444443 467999999888
Q ss_pred EEEEEcCCCCC--------CCCCCcEEeeeCCceEE
Q 015125 383 VCMKIGDGSWC--------PAGKEWTLATSGHKYAV 410 (413)
Q Consensus 383 ~lv~lnn~~~~--------~~~~~~~~~~s~~~~~~ 410 (413)
++|++|+++.. ...+.|+++++|..+++
T Consensus 367 ~lVv~N~~~~~~~~~~~~~l~~g~~~d~l~~~~~~~ 402 (422)
T 1ua7_A 367 GVVLANAGSSSVSINTATKLPDGRYDNKAGAGSFQV 402 (422)
T ss_dssp EEEEEECSSSCEEEEEECCSCSEEEECTTSSCEEEE
T ss_pred EEEEEeCCCCCeEEEEecccCCCeeeeeecCceEEe
Confidence 89999996522 12456888888876654
|
| >3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-56 Score=472.86 Aligned_cols=350 Identities=14% Similarity=0.099 Sum_probs=262.3
Q ss_pred ccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC---CCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 015125 21 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF---APEGYLPQNLYSLNSSYGSEHLLKALLH 97 (413)
Q Consensus 21 ~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~---~~~gY~~~d~~~id~~~Gt~~~~~~Lv~ 97 (413)
++..+.||||++.++|. |+|+||+++|+|||+||||+|||+||++++ +++||+|.||++|+|+|||++||++||+
T Consensus 91 ~~~~~~viY~~~~~~f~--G~~~gl~~~LdyL~~lGv~~v~l~P~~~~~~~~~~~GY~~~dy~~i~~~~Gt~~d~~~lv~ 168 (655)
T 3ucq_A 91 LQRPEMVGYVAYTDRFA--GTLKGVEERLDYLEGLGVKYLHLMPLLRPREGENDGGYAVQDYRAVRPDLGTMDDLSALAR 168 (655)
T ss_dssp GGSTTCCEEEECHHHHH--SSHHHHHTTHHHHHHTTCCEEEECCCEEECSSCCGGGTSEEEEEEECGGGCCHHHHHHHHH
T ss_pred ccCCceEEEEEehhhhC--CCHHHHHHhhHHHHHcCCCEEEECCCcCCCCCCCCCCcCCcCcCccCccCCCHHHHHHHHH
Confidence 44445699999998876 899999999999999999999999999875 5799999999999999999999999999
Q ss_pred HHHHcCCEEEEEEccccCcCCCCCCC------Cccc----ccCCC----------CCCC---CCCCeeccCCC----CCC
Q 015125 98 KMKQHKVRAMADIVINHRVGTTQGHG------GKYN----RYDGI----------PLSW---DEHAVTSCTGG----LGN 150 (413)
Q Consensus 98 ~~h~~Gi~VilD~V~NH~~~~~~~~~------~~y~----~~~~~----------~~~~---~~~~~~~~~~~----~~~ 150 (413)
+||++||+||+|+|+||++.+|+|+. +.|. ++.+. +..| .+.. ..+.+. .+.
T Consensus 169 ~~h~~Gi~Vi~D~V~NH~s~~~~wf~~~~~~~~~~~d~y~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~ 247 (655)
T 3ucq_A 169 ALRGRGISLVLDLVLNHVAREHAWAQKARAGDPKYRAYFHLFPDRRGPDAFEATLPEIFPDFAPGN-FSWDEEIGEGEGG 247 (655)
T ss_dssp HHHHTTCEEEEEECCSEEETTSHHHHHHHTTCHHHHTTBCEESSSHHHHHHHTTCCCSCTTTSCSS-EEEETTSSSSSCE
T ss_pred HHHHCCCEEEEEeeccccccchHHHHHhhcCCCCCcccEEEcCCCCCCccccccCccccccCCCCc-ccccccccccCCc
Confidence 99999999999999999999997542 1121 11110 0000 0000 001010 111
Q ss_pred CcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc-------------HHHHHHHHHhhC---C-C
Q 015125 151 GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-------------AKYVKEYIEGAR---P-I 213 (413)
Q Consensus 151 ~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~-------------~~~~~~~~~~~~---~-~ 213 (413)
.........+||||++||+||++|++++++|+ ++||||||+|+|+++. .++++++.+.++ | .
T Consensus 248 ~~~~~f~~~qpDLn~~np~V~~~i~~~l~~w~-~~GvDGfRlDa~~~l~k~~g~~~~~~~~~~~~l~~~r~~~~~~~p~~ 326 (655)
T 3ucq_A 248 WVWTTFNSYQWDLNWANPDVFLEFVDIILYLA-NRGVEVFRLDAIAFIWKRLGTDCQNQPEVHHLTRALRAAARIVAPAV 326 (655)
T ss_dssp EEECSSSTTEEEBCTTSHHHHHHHHHHHHHHH-TTTCCEEEETTGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred eEeccccCCCCccCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhccccCCCccCCcHHHHHHHHHHHHHHHHhCCCe
Confidence 11222346789999999999999999999999 8999999999999984 678887776543 4 7
Q ss_pred eEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCC----CcccccCccchHHHHHHh-ccchhhhhhhcCCCCCccccc
Q 015125 214 FSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTG----QLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWW 288 (413)
Q Consensus 214 ~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~df~~~~~l~~~~-~g~~~~~~~~~~~~~~~~~~~ 288 (413)
+++||+|.. ...+..|++.+. .+.++|||.+...+..++ .++...+.......+. ...
T Consensus 327 ~~vgE~~~~---------------~~~~~~y~~~~~~~~~~~~~~fdf~l~~~~~~a~~~~~~~~L~~~l~~~~~--~~~ 389 (655)
T 3ucq_A 327 AFKAEAIVA---------------PADLIHYLGTRAHHGKVSDMAYHNSLMVQLWSSLASRNTRLFEEALRAFPP--KPT 389 (655)
T ss_dssp EEEECCCCC---------------HHHHGGGTCCSSSSCCSCSEEECHHHHHHHHHHHHHCCCHHHHHHHHTCCC--CCT
T ss_pred EEEEecCCC---------------HHHHHHHhCCCCccccccCeEECccchHHHHHHHhcCCHHHHHHHHHhCcC--CCC
Confidence 889999965 466778876543 378899999998888877 3444445444332111 112
Q ss_pred CCcceecccCCCCCcCCCC----------------------------------------------C-C------------
Q 015125 289 PSRAVTFLDNHDTGSTQAH----------------------------------------------W-P------------ 309 (413)
Q Consensus 289 p~~~v~flenHD~~R~~~~----------------------------------------------~-~------------ 309 (413)
+...++|++|||+..+.-. . .
T Consensus 390 ~~~~v~Fv~nHD~i~l~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~n~~~~~~~i~~~~~s~~g~~~al 469 (655)
T 3ucq_A 390 STTWGLYVRCHDDIGWAISDEDAARAGLNGAAHRHFLSDFYSGQFPGSFARGLVFQYNPVNGDRRISGSAASLAGLEAAL 469 (655)
T ss_dssp TCEEEECSCCSSCBCCCCCHHHHHHTTCCHHHHHHHHHHHHTTCSTTCCCCCEEESCCTTTCCCEEECCHHHHTTHHHHH
T ss_pred CCeEEEEeeeCCCCCccCChHHHHhhcccchHHHHHHHHHhcccCCcccccCcccccccccccccccccccchhhHHHHh
Confidence 3357999999999432100 0 0
Q ss_pred --CC-------hhHHHHHHHHHhcCCCeeEEecCcccCCc--------------------------h-------------
Q 015125 310 --FP-------SNHIMEGYAYILMHPGIPSVFYDHFYDWG--------------------------D------------- 341 (413)
Q Consensus 310 --~~-------~~~~~la~a~ll~~pGiP~Iy~G~E~gw~--------------------------~------------- 341 (413)
.+ ..++++|++++|++||+|+||||+|+|.. .
T Consensus 470 ~~~d~~~~~~~~~r~~la~aill~~pGiP~iy~GdE~G~~nd~~~~~d~~~~~~~R~~~R~~~~w~~v~~~~~d~~s~~~ 549 (655)
T 3ucq_A 470 ETGDPGRIEDAVRRLLLLHTVILGFGGVPLLYMGDELALLNDYAFEDVPEHAPDNRWVHRPQMDWALAERVRQEPSSPAG 549 (655)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCGGGGGSTTTTTCGGGGGCCCCCHHHHHHHHHCTTSHHH
T ss_pred ccCCchhhhhHHHHHHHHHHHHHhCCCeeEEEchHhhcCCCchhhhccccccCcccccccCCCChHHHHHHhcCCCChHH
Confidence 00 14789999999999999999999998631 1
Q ss_pred hHHHHHHHHHHHHHhCcccCCC-CeEEEEec-CCEEEEEE---CCEEEEEEcCCC
Q 015125 342 SIHNQIVKLMDVRRQQDIHSRS-SIKILEAQ-SNLYSAII---GDKVCMKIGDGS 391 (413)
Q Consensus 342 ~l~~~i~~L~~lR~~~p~l~~G-~~~~~~~~-~~~~~~~r---~~~~lv~lnn~~ 391 (413)
.++.++++|+++|+++|+|..| .++++..+ +.+++|.| ++.++|++|.+.
T Consensus 550 ~v~~~~~~Li~lRk~~paf~~~~~~~~l~~~~~~vlaf~R~~~~~~llvv~N~s~ 604 (655)
T 3ucq_A 550 RVNTGLRHLLRVRRDTPQLHASIESQVLPSPDSRALLLRRDHPLGGMVQVYNFSE 604 (655)
T ss_dssp HHHHHHHHHHHHHHTCGGGCTTSCCEECCCSSTTEEEEEECCTTCCEEEEEECSS
T ss_pred HHHHHHHHHHHHHHhCccccCCCceEEEeCCCCcEEEEEEECCCCeEEEEEeCCC
Confidence 1488999999999999999988 58887655 68999999 567888888754
|
| >2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-56 Score=466.70 Aligned_cols=327 Identities=14% Similarity=0.127 Sum_probs=245.2
Q ss_pred ceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015125 25 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~ 102 (413)
..||||++.++|+..|||+||+++|+|||+||||+|||+||++++ .+|||++.|||+|+|+|||.+|||+||++||++
T Consensus 126 ~~viYei~~~~f~~~G~~~gi~~~L~yl~~lGv~~I~L~Pi~~~~~~~~wGY~~~~y~~~~~~~Gt~~d~~~lv~~~H~~ 205 (602)
T 2bhu_A 126 DCVFYEVHVGTFTPEGTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLMALVDAAHRL 205 (602)
T ss_dssp GCCEEEECHHHHSSSCSHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGCCHHHHHHHHHHHHHT
T ss_pred cceEEEEeecccccCCCHHHHHHHHHHHHHcCCCEEEECChhhccCCCCCCcccccCcccCcCCCCHHHHHHHHHHHHHC
Confidence 369999999999999999999999999999999999999999876 468999999999999999999999999999999
Q ss_pred CCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHH
Q 015125 103 KVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLR 182 (413)
Q Consensus 103 Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~ 182 (413)
||+||||+|+||++.++++.. . |.+ ..|.. .... ...+++|+++|+||++|++++++|+
T Consensus 206 Gi~VilD~V~NH~~~~~~~~~-~---~~~--~~~~~----~~~~-----------~w~~~ln~~~~~v~~~i~~~~~~W~ 264 (602)
T 2bhu_A 206 GLGVFLDVVYNHFGPSGNYLS-S---YAP--SYFTD----RFSS-----------AWGMGLDYAEPHMRRYVTGNARMWL 264 (602)
T ss_dssp TCEEEEEECCSCCCSSSCCHH-H---HCG--GGEEE----EEEC-----------SSSEEECTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecccccccCCcccc-c---cCc--ccccC----CCCC-----------CCCCCccCCCHHHHHHHHHHHHHHH
Confidence 999999999999998765321 1 110 00110 0001 1146899999999999999999999
Q ss_pred hhcCCCeEeecccCCC----cHHHHHHHHHhhC---CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCccccc
Q 015125 183 NTVGFQDFRFDFARGY----SAKYVKEYIEGAR---PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAF 255 (413)
Q Consensus 183 ~~~gvDGfR~D~a~~i----~~~~~~~~~~~~~---~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 255 (413)
+++||||||+|+++++ +.+||+++.++++ +.++|||.|...+ ..+.. +.++.+.|
T Consensus 265 ~~~gvDGfR~D~~~~i~~~~~~~fl~~~~~~v~~~~~~~li~E~~~~~~--------------~~~~~----~~g~~~~~ 326 (602)
T 2bhu_A 265 RDYHFDGLRLDATPYMTDDSETHILTELAQEIHELGGTHLLLAEDHRNL--------------PDLVT----VNHLDGIW 326 (602)
T ss_dssp HHHCCSEEEETTGGGCCCCSSSCHHHHHHHHHHTTCSCCEEEEECSSCC--------------THHHH----TTCCSEEE
T ss_pred HHhCCCEEEEechHhhhccchHHHHHHHHHHHhhcCCeEEEEEeCCCCc--------------ccccC----CCCcceEE
Confidence 8899999999999999 6789999988764 4789999986522 11111 22345566
Q ss_pred CccchHHHHHHhccch-----------hhhhhhcCCC---CC----------c-----ccccCCcceecccCCCCC----
Q 015125 256 DFTTKGILQEAVKGQF-----------WRLRDAQGKP---PG----------V-----MGWWPSRAVTFLDNHDTG---- 302 (413)
Q Consensus 256 df~~~~~l~~~~~g~~-----------~~~~~~~~~~---~~----------~-----~~~~p~~~v~flenHD~~---- 302 (413)
++.++..+...+.++. ..+...+... .+ . ....|...++|++|||+.
T Consensus 327 n~~~~~~l~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~fl~nHD~~~n~~ 406 (602)
T 2bhu_A 327 TDDFHHETRVTLTGEQEGYYAGYRGGAEALAYTIRRGWRYEGQFWAVKGEEHERGHPSDALEAPNFVYCIQNHDQIGNRP 406 (602)
T ss_dssp CTHHHHHHHHHHHCCCSGGGGGCCCSHHHHHHHHHHSSSCEEEEECCTTCCEEEECCCTTCCGGGEEEESCCHHHHHTST
T ss_pred CchhhHHHHHHhcCCCcccccccccCHHHHHHHHHhccccccccchhhccccccCccccCCCccceeeehhcCccccccC
Confidence 6555554444432211 1111110000 00 0 011234679999999983
Q ss_pred ---cCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC-----------------------------------------
Q 015125 303 ---STQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD----------------------------------------- 338 (413)
Q Consensus 303 ---R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g----------------------------------------- 338 (413)
|+.........++++|++++||+||+||||||+|+|
T Consensus 407 ~g~r~~~~~~~~~~~~k~a~a~ll~~pG~P~iy~G~E~G~~~~~~~~~~~D~~~~~~~r~g~~~~~~~~~~~~~~r~p~~ 486 (602)
T 2bhu_A 407 LGERLHQSDGVTLHEYRGAAALLLTLPMTPLLFQGQEWAASTPFQFFSDHAGELGQAVSEGRKKEFGGFSGFSGEDVPDP 486 (602)
T ss_dssp TCCCGGGSTTCCHHHHHHHHHHHHHSSSEEEEETTGGGTCSSCCCCCCCCCHHHHHHHHHHHHHHC---------CCCCT
T ss_pred ccchhhhhhcccHHHHHHHHHHHHhCCCCcEEecchhhcCcCCCcccccCCHHHhhhhhhcchhhhhhcccccccCCCCC
Confidence 433332335678999999999999999999999965
Q ss_pred ------------Cc-------hhHHHHHHHHHHHHHhCcccCCCCeEEEEe---cCCEEEEEE---CCEEEEEEcCCC
Q 015125 339 ------------WG-------DSIHNQIVKLMDVRRQQDIHSRSSIKILEA---QSNLYSAII---GDKVCMKIGDGS 391 (413)
Q Consensus 339 ------------w~-------~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~---~~~~~~~~r---~~~~lv~lnn~~ 391 (413)
|. .++++++|+|++||+++|+|+.|+++.+.. ++ +++|.| +++++|++|.+.
T Consensus 487 ~~~~~f~~~~l~w~~~q~~~~~s~~~~yr~Li~LRk~~pal~~g~~~~~~~~~~~~-v~a~~R~~~~~~~lVv~N~s~ 563 (602)
T 2bhu_A 487 QAEQTFLNSKLNWAEREGGEHARTLRLYRDLLRLRREDPVLHNRQRENLTTGHDGD-VLWVRTVTGAGERVLLWNLGQ 563 (602)
T ss_dssp TSHHHHHTTSCCSGGGGSHHHHHHHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETT-EEEEEEEETTEEEEEEEECSS
T ss_pred ccccccccccCChhhhcccccHHHHHHHHHHHHHHhcChhhhcCCcccccccccCC-eEEEEEEeCCCcEEEEEeCCC
Confidence 21 258899999999999999999998876544 45 999988 457888888865
|
| >4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-55 Score=451.81 Aligned_cols=359 Identities=18% Similarity=0.265 Sum_probs=256.1
Q ss_pred ccccCCceeEEEeeecCCCCCccHHHHHhhh-hhHHHcCCCEEEcCCCCCCCC--------CCCCCcccCCCCCCCCCCH
Q 015125 19 AVIRNGREILFQGFNWESCKHDWWRNLERKV-PDISKSGFTSVWLPPATHSFA--------PEGYLPQNLYSLNSSYGSE 89 (413)
Q Consensus 19 ~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L-~yLk~lGv~~I~L~Pi~~~~~--------~~gY~~~d~~~id~~~Gt~ 89 (413)
|++++|++||||+|+|. |+.|++++ +||++|||++||||||.|+.. ++||+|.| |+|+|+|||+
T Consensus 4 p~~~~g~~~i~~~f~W~------w~~ia~e~~~yl~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~d-y~i~~~~Gt~ 76 (496)
T 4gqr_A 4 PNTQQGRTSIVHLFEWR------WVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVS-YKLCTRSGNE 76 (496)
T ss_dssp CCCCTTCCEEEEETTCC------HHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSC-SCSCBTTBCH
T ss_pred CCCCCCCcEEEEecCCC------HHHHHHHHHHHHHHhCCCEEEeCccccCccCCCCCCCcccccCccC-ceeCCCCCCH
Confidence 78899999999999998 99998766 799999999999999999631 47999999 6899999999
Q ss_pred HHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcc---cccCC-----CCCCCCCCCe----eccC----CCCC--CC
Q 015125 90 HLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKY---NRYDG-----IPLSWDEHAV----TSCT----GGLG--NG 151 (413)
Q Consensus 90 ~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y---~~~~~-----~~~~~~~~~~----~~~~----~~~~--~~ 151 (413)
+|||+||++||++||+||+|+|+||++.++++..... ..+.. ....+....+ +... ..+. ..
T Consensus 77 ~df~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (496)
T 4gqr_A 77 DEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQ 156 (496)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSEEEETTSCSBSCBTTCCCBBTTTTBBTTTTBCGGGBSTTTCCSSSSBCCCTTCHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEccCcCCCccccccccCcCCcccccccccCCCCCCCccccCCCcccCCCCcccccCCcce
Confidence 9999999999999999999999999999887653211 00100 0000110000 0000 0010 01
Q ss_pred cCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCC-----------CeEEEccc
Q 015125 152 STGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARP-----------IFSVGEYW 220 (413)
Q Consensus 152 ~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~-----------~~~vgE~~ 220 (413)
...+.+..+||||++||+||++|++++++|+ ++||||||+|+|++++.++|+++...++. .++++|.|
T Consensus 157 ~~~~~~~~~~Dln~~n~~V~~~l~~~~~~~~-~~gvDGfR~D~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 235 (496)
T 4gqr_A 157 VRDCRLTGLLDLALEKDYVRSKIAEYMNHLI-DIGVAGFRLDASKHMWPGDIKAILDKLHNLNSNWFPAGSKPFIYQEVI 235 (496)
T ss_dssp HHHSBGGGEEEBCTTSHHHHHHHHHHHHHHH-HHTCCEEEETTGGGSCHHHHHHHHTTCCCCCTTTSCTTCCCEEEECCC
T ss_pred eEeeecCCCCccccCCHHHHHHHHHHHHHHH-hcCcceeecccccccchHHHHHHHHHHHhhccchhcccCcceEEeeee
Confidence 1234456799999999999999999999999 89999999999999999999999988652 46889988
Q ss_pred CCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc-h--hhhhhhcCCCCCcccccCCcceeccc
Q 015125 221 DSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ-F--WRLRDAQGKPPGVMGWWPSRAVTFLD 297 (413)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~-~--~~~~~~~~~~~~~~~~~p~~~v~fle 297 (413)
.... .. +..+.. .....+++|.+...+..++... . ......+.. ......+..+++|++
T Consensus 236 ~~~~----~~----------~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~Fv~ 297 (496)
T 4gqr_A 236 DLGG----EP----------IKSSDY--FGNGRVTEFKYGAKLGTVIRKWNGEKMSYLKNWGE--GWGFVPSDRALVFVD 297 (496)
T ss_dssp CCSS----SS----------CCGGGG--TTTSEEECHHHHHHHHHHHTTGGGCCGGGGGGTTG--GGTCCCGGGEEECSC
T ss_pred ccCc----cc----------cchhhh--cCCCcccchhhHHHHHHHHhhccchhHHHHHhhhh--hhccCCccceeeecc
Confidence 6521 00 001101 1245678888888888887432 1 122222221 111223457899999
Q ss_pred CCCCCcCCCCCCC------ChhHHHHHHHHHhcCC-CeeEEecCcccCCc------------------------------
Q 015125 298 NHDTGSTQAHWPF------PSNHIMEGYAYILMHP-GIPSVFYDHFYDWG------------------------------ 340 (413)
Q Consensus 298 nHD~~R~~~~~~~------~~~~~~la~a~ll~~p-GiP~Iy~G~E~gw~------------------------------ 340 (413)
|||++|+.+.... +..+.+++++++++.| |+|+||+|.|++-.
T Consensus 298 NHD~~R~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~G~P~i~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (496)
T 4gqr_A 298 NHDNQRGHGAGGASILTFWDARLYKMAVGFMLAHPYGFTRVMSSYRWPRQFQNGNDVNDWVGPPNNNGVIKEVTINPDTT 377 (496)
T ss_dssp CTTGGGSSSTTGGGCCCGGGHHHHHHHHHHHHHSCSSEEEEEECBCCCCCEETTEETTTTCCSSEETTEECCCCBCTTSC
T ss_pred cccccccccccCCccccccCHHHHHHHHHHHHhccCCccceeecccccccccCCCCCCccccccCCCccccccccCcccc
Confidence 9999998775431 3356778888889888 99999888765210
Q ss_pred -------hhHHHHHHHHHHHHHhCcccCCCCe-EEEEecCCEEEEEECCEEEEEEcCCCCC--------CCCCCcEEeee
Q 015125 341 -------DSIHNQIVKLMDVRRQQDIHSRSSI-KILEAQSNLYSAIIGDKVCMKIGDGSWC--------PAGKEWTLATS 404 (413)
Q Consensus 341 -------~~l~~~i~~L~~lR~~~p~l~~G~~-~~~~~~~~~~~~~r~~~~lv~lnn~~~~--------~~~~~~~~~~s 404 (413)
......|++|+++|+.. ..... ..+..+++++||.|+++++||+|+++.. .+.|.|++++|
T Consensus 378 ~~~~~~~~~~~~~i~~l~~~r~~~---~g~~~~~~~~~~~~~iaF~Rg~~~~V~~N~~~~~~~~~~~t~lp~G~y~Dvls 454 (496)
T 4gqr_A 378 CGNDWVCEHRWRQIRNMVIFRNVV---DGQPFTNWYDNGSNQVAFGRGNRGFIVFNNDDWSFSLTLQTGLPAGTYCDVIS 454 (496)
T ss_dssp BCTTBCCGGGSHHHHHHHHHHHHT---TTCCEEEEEECSSSEEEEEETTTEEEEEECSSSCEEEEEECCCCSEEEECTTT
T ss_pred ccchhhHHHHHHHHHHHHHHHhhc---cCCceEEEEeCCCCEEEEEeCCcEEEEEECCCCCEEEEEEcCCCCcEEEEEEc
Confidence 12467899999999875 22333 3345567899999999999999996532 13467888877
Q ss_pred CC
Q 015125 405 GH 406 (413)
Q Consensus 405 ~~ 406 (413)
|.
T Consensus 455 g~ 456 (496)
T 4gqr_A 455 GD 456 (496)
T ss_dssp CC
T ss_pred Cc
Confidence 64
|
| >3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-55 Score=463.39 Aligned_cols=347 Identities=11% Similarity=0.106 Sum_probs=258.2
Q ss_pred eeEEEeeecCCCC----CccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC---------------CCC--CCccc----CC
Q 015125 26 EILFQGFNWESCK----HDWWRNLERKVPDISKSGFTSVWLPPATHSFA---------------PEG--YLPQN----LY 80 (413)
Q Consensus 26 ~~i~~~f~~~~~~----~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~---------------~~g--Y~~~d----~~ 80 (413)
++|||+|.++|+. .|||+||+++|||||+||||+|||+||+++++ ++| |++.| ||
T Consensus 232 ~~iYEi~~rsf~~~~~~~Gd~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~g~~n~~~~~~~d~GspY~i~d~~~~y~ 311 (695)
T 3zss_A 232 GAWYEFFPRSEGTPHTPHGTFRTAARRLPAIAAMGFDVVYLPPIHPIGTTHRKGRNNTLSATGDDVGVPWAIGSPEGGHD 311 (695)
T ss_dssp EEEEECCGGGSCCSSCCSCCHHHHGGGHHHHHHTTCCEEEECCCSCBCCTTCCCGGGCSSCCTTCCCCTTSBCBTTBCTT
T ss_pred ceEEEEehhHhcCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCcccCCccccccccccccccccCCCCcccccCCCCCcc
Confidence 6999999999887 58999999999999999999999999999864 345 88888 99
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCC
Q 015125 81 SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGV 160 (413)
Q Consensus 81 ~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (413)
+|+|+|||.++||+||++||++||+||||+|+|| +.++++++....+|. |.+.....+.. .....|.++
T Consensus 312 ~idp~~Gt~edfk~LV~~aH~~GI~VilD~V~Nh-s~~~~~~~~~~dwf~-----~~~dg~~~~~~-----~~~~~~~~~ 380 (695)
T 3zss_A 312 SIHPALGTLDDFDHFVTEAGKLGLEIALDFALQC-SPDHPWVHKHPEWFH-----HRPDGTIAHAE-----NPPKKYQDI 380 (695)
T ss_dssp SCCTTTCCHHHHHHHHHHHHHTTCEEEEEECCEE-CTTSTHHHHCGGGSC-----CCTTSCCCCEE-----ETTEEETTC
T ss_pred ccCcccCCHHHHHHHHHHHHHCCCEEEEEeeccC-Cccchhhhcccceee-----ecCCCCcccCC-----CCCcccccc
Confidence 9999999999999999999999999999999998 677776543222221 11110000000 011235677
Q ss_pred CcCCCCC--HHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC---C-CeEEEcccCCCCCCCCCCCCcc
Q 015125 161 PNIDHTQ--HFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLDYNQ 234 (413)
Q Consensus 161 ~dln~~~--~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~~~~ 234 (413)
++||+.| |+||++|++++++|++ +||||||+|++++++.+||++++++++ | .+++||+|..
T Consensus 381 ~dLn~~n~~p~V~~~l~~~l~~Wi~-~GVDGfRlD~a~~~~~~f~~~~~~~v~~~~pd~~~vgE~~~~------------ 447 (695)
T 3zss_A 381 YPIAFDADPDGLATETVRILRHWMD-HGVRIFRVDNPHTKPVAFWERVIADINGTDPDVIFLAEAFTR------------ 447 (695)
T ss_dssp EECCCSSCHHHHHHHHHHHHHHHHH-TTCCEEEESSGGGSCHHHHHHHHHHHHHHCTTCEEEECCCSC------------
T ss_pred ccccccCCcHHHHHHHHHHHHHHHH-hCCCEEEecCcchhhHHHHHHHHHHHHhhCCCceEEEeecCC------------
Confidence 8999999 9999999999999995 999999999999999999999988765 4 7889999964
Q ss_pred chhhHhHhhhhccCCCcccccCccchHHHHHHhccchhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCChhH
Q 015125 235 DSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNH 314 (413)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~~~ 314 (413)
+..+..+.. .+++..|++........ ....+...+.. .+.. ....++|++|||+.|+.+..+ +..+
T Consensus 448 ---p~~~~~l~~--~gfd~~~~y~~~~~~~~----~l~~~~~~l~~---~~~~-~~~~~~FvdNHD~~R~~s~~g-~~~~ 513 (695)
T 3zss_A 448 ---PAMMATLAQ--IGFQQSYTYFTWRNTKQ----ELTEYLTELSG---EAAS-YMRPNFFANTPDILHAYLQHG-GRPA 513 (695)
T ss_dssp ---HHHHHHHHH--TTCSEEECSGGGCCSHH----HHHHHHHHHTT---GGGG-TCCEEEESCBTTBCCHHHHHH-CHHH
T ss_pred ---hHHhhhhhc--cCcCceechhhhhcchh----HHHHHHHhhhh---hhhh-cccceecccCCCccchhcccc-hHHH
Confidence 122333332 23556666543211110 11112221111 0111 124578999999999765544 4668
Q ss_pred HHHHHHHHhcCCCeeEEecCcccCC------------------------c------hhHHHHHHHHHHHHHhCcccCCC-
Q 015125 315 IMEGYAYILMHPGIPSVFYDHFYDW------------------------G------DSIHNQIVKLMDVRRQQDIHSRS- 363 (413)
Q Consensus 315 ~~la~a~ll~~pGiP~Iy~G~E~gw------------------------~------~~l~~~i~~L~~lR~~~p~l~~G- 363 (413)
.++++++++|+||+|+||||+|+|. + .+++++|++|++||+++|+|+.|
T Consensus 514 ~kla~all~tl~GiP~IYyGdE~G~~g~~dp~~~ey~d~e~~~r~p~~W~~~~~~~~~l~~~ik~Li~LRk~~paL~~g~ 593 (695)
T 3zss_A 514 FEVRAVLAATLSPTWGIYSGYELCENTPLREGSEEYLDSEKYQLKPRDWTRAAREGTTIAPLVTRLNTIRRENPALRQLR 593 (695)
T ss_dssp HHHHHHHHHHHCSEEEEETTGGGTCCCBSSTTCCSBTTCTTSSCCCCCHHHHHHHTCSCHHHHHHHHHHHHHCGGGGCSS
T ss_pred HHHHHHHHHhcCCCcEEEcCeeccccCCCCCCccccccccccccCCCCccccccccchHHHHHHHHHHHHHhCHHhcCCC
Confidence 8999999999999999999999752 1 34899999999999999999985
Q ss_pred CeEEEEe-cCCEEEEEE---CCEEEEEEcCCCCC--------C-------CC--CCcEEeeeCCceEE
Q 015125 364 SIKILEA-QSNLYSAII---GDKVCMKIGDGSWC--------P-------AG--KEWTLATSGHKYAV 410 (413)
Q Consensus 364 ~~~~~~~-~~~~~~~~r---~~~~lv~lnn~~~~--------~-------~~--~~~~~~~s~~~~~~ 410 (413)
.++++.. ++++++|.| ++.++|++|+++.. | .+ ..++++++|..|.+
T Consensus 594 ~~~~~~~~~~~vlaf~R~~~~~~vlVviN~s~~~~~~~tv~Lp~~~~g~~~~~~~~~~Dllsg~~~~~ 661 (695)
T 3zss_A 594 DLHFHPTDKEEVIAYSKRQGSNTVLVVVNLDPRHTQEATVSLDMPQLGLDWHESVPVRDELTGETYHW 661 (695)
T ss_dssp CCEECCBSCTTEEEEEEEETTEEEEEEEECCSSSCEEEEEECCHHHHTCCTTCEEEEEETTTCCEEEE
T ss_pred cEEEEEcCCCcEEEEEEEcCCCEEEEEEECCCCCCceEEEEeCcHHhCCCCCCceEEEECCCCCEEee
Confidence 7777754 467999998 57888999997421 1 11 15788899988875
|
| >2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-55 Score=466.22 Aligned_cols=358 Identities=17% Similarity=0.199 Sum_probs=254.4
Q ss_pred CceeEEEeeecCCCC--------CccHHHHHh-----------hhhhHHHcCCCEEEcCCCCCCCC----------CCCC
Q 015125 24 GREILFQGFNWESCK--------HDWWRNLER-----------KVPDISKSGFTSVWLPPATHSFA----------PEGY 74 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~--------~g~~~gi~~-----------~L~yLk~lGv~~I~L~Pi~~~~~----------~~gY 74 (413)
...||||+|.++|+. .|+|.|+++ +|||||+||||+||||||+++++ +|||
T Consensus 213 ~~~viYei~v~~F~~~~~~g~~~~G~~~g~~e~~~~~l~Gi~~~LdyLk~LGvtaI~L~Pi~~~~~~de~~~~~~~~wGY 292 (718)
T 2e8y_A 213 VDAVIYETHLRDFSIHENSGMINKGKYLALTETDTQTANGSSSGLAYVKELGVTHVELLPVNDFAGVDEEKPLDAYNWGY 292 (718)
T ss_dssp GGCCEEEECHHHHHHSTTSCCSSTTSGGGGGCTTCBCTTSCBCHHHHHHHHTCSEEEESCCEEESSSCTTSGGGCCCCCC
T ss_pred hhcEEEEEehHHhcCCCCCCCCCCCCeeccccccccccccchhhhHHHHHcCCCEEEECCccccCccccccccccCcCCC
Confidence 347999999998773 388888876 89999999999999999997653 4999
Q ss_pred CcccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEEccccCcCCC-CCCCCcccccCCCCCCCCCCCeeccC
Q 015125 75 LPQNLYSLNSSYGS--------EHLLKALLHKMKQHKVRAMADIVINHRVGTT-QGHGGKYNRYDGIPLSWDEHAVTSCT 145 (413)
Q Consensus 75 ~~~d~~~id~~~Gt--------~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~ 145 (413)
+|.||++++++||+ .+|||+||++||++||+||||+|+||++.++ +++... . +..|...
T Consensus 293 d~~dy~a~~~~yg~~p~~g~~~~~dfk~LV~~aH~~GI~VIlDvV~NHt~~~~~~~f~~~----~--p~y~~~~------ 360 (718)
T 2e8y_A 293 NPLHFFAPEGSYASNPHDPQTRKTELKQMINTLHQHGLRVILDVVFNHVYKRENSPFEKT----V--PGYFFRH------ 360 (718)
T ss_dssp SEEEEEEECSTTSSCSSSHHHHHHHHHHHHHHHHHTTCEEEEEECTTCCSSGGGSHHHHH----S--TTTSBCB------
T ss_pred CccCCCCcCcccccCCCCccccHHHHHHHHHHHHHCCCEEEEEEecccccCccccccccc----C--CCeEEec------
Confidence 99999999999997 6999999999999999999999999999987 332211 0 0011100
Q ss_pred CCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC---C-CeEEEcccC
Q 015125 146 GGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYWD 221 (413)
Q Consensus 146 ~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~---~-~~~vgE~~~ 221 (413)
+..+.. .+ .....++||++||+||++|++++++|++++||||||+|++++++.++|+++.++++ | .+++||.|.
T Consensus 361 ~~~g~~-~n-~~~~g~dln~~np~Vr~~i~d~~~~Wl~e~gVDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~ligE~w~ 438 (718)
T 2e8y_A 361 DECGKP-SN-GTGVGNDIASERRMARKFIADCVVYWLEEYNVDGFRFDLLGILDIDTVLYMKEKATKAKPGILLFGEGWD 438 (718)
T ss_dssp CTTSSB-CC-TTSSSCCBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHHHSTTCEEEECCCC
T ss_pred CCCCcc-cC-CCCcccccccCCHHHHHHHHHHHHHHHHHhCCCEEEEeccccCCHHHHHHHHHHHHHhCCCeEEEEeecC
Confidence 000100 00 01235799999999999999999999988999999999999999999999887653 4 789999997
Q ss_pred CCCCCCCCCCCccchhhHhHhhhhc-cCCCc--ccccCccchHHHHHH---------hccc---hhhhhhhcCCCCCc--
Q 015125 222 SCNYNSHGLDYNQDSHRQRIINWID-GTGQL--SAAFDFTTKGILQEA---------VKGQ---FWRLRDAQGKPPGV-- 284 (413)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~--~~~~df~~~~~l~~~---------~~g~---~~~~~~~~~~~~~~-- 284 (413)
.... .+. ...+.. ..+++ .+.|++.++..+... ..|. ...+...+.....+
T Consensus 439 ~~~~---~~~---------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~f~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~ 506 (718)
T 2e8y_A 439 LATP---LPH---------EQKAALANAPRMPGIGFFNDMFRDAVKGNTFHLKATGFALGNGESAQAVMHGIAGSSGWKA 506 (718)
T ss_dssp CCCS---SCG---------GGBCCGGGGGGCTTCEEECHHHHHHHHCCSSSTTCCCGGGTCGGGHHHHHHHHBTTSCBTT
T ss_pred CCCc---ccc---------ccccccccccCCCceEEEChHHHHHhhcccccccccceecCChhhHHHHHHHHhcCccccc
Confidence 5210 000 000000 01111 345666555555431 1121 11222222111111
Q ss_pred ---ccccCCcceecccCCCCCcCCCCCC----C-----ChhHHHHHHHHHhcCCCeeEEecCcccCC-------------
Q 015125 285 ---MGWWPSRAVTFLDNHDTGSTQAHWP----F-----PSNHIMEGYAYILMHPGIPSVFYDHFYDW------------- 339 (413)
Q Consensus 285 ---~~~~p~~~v~flenHD~~R~~~~~~----~-----~~~~~~la~a~ll~~pGiP~Iy~G~E~gw------------- 339 (413)
....|...++|++|||++|+.+.+. . ...++++|++++|++||+||||||+|+|-
T Consensus 507 ~~~~~~~~~~~vnfv~nHD~~rl~~~~~~~~~~~~~~~~~~~~kla~a~ll~~~G~P~iy~GdE~g~~~~g~~~~y~~~d 586 (718)
T 2e8y_A 507 LAPIVPEPSQSINYVESHDNHTFWDKMSFALPQENDSRKRSRQRLAVAIILLAQGVPFIHSGQEFFRTKQGVENSYQSSD 586 (718)
T ss_dssp BCCSSSSGGGEEECSCCSSSSCHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTSBSEEEEETTGGGTCCCTTCSCCTTCCH
T ss_pred cccccCCcccEEEEEecCCCchHHhhhhccCCCCCHHHHHHHHHHHHHHHHHCCCCcEEeechhhCccCCCCCcccCCCc
Confidence 1123457899999999999754321 1 12578999999999999999999999752
Q ss_pred -------c-----hhHHHHHHHHHHHHHhCcccCCCCe-------EEEEecCCEEEEEEC--------CEEEEEEcCCCC
Q 015125 340 -------G-----DSIHNQIVKLMDVRRQQDIHSRSSI-------KILEAQSNLYSAIIG--------DKVCMKIGDGSW 392 (413)
Q Consensus 340 -------~-----~~l~~~i~~L~~lR~~~p~l~~G~~-------~~~~~~~~~~~~~r~--------~~~lv~lnn~~~ 392 (413)
. .++++++|+|++||+++|+|+.|++ +.+..++++++|.|. +.++|++|.+..
T Consensus 587 ~~~~~~W~~~~~~~~l~~~~~~Li~lRk~~pal~~g~~~~i~~~~~~~~~~~~v~a~~r~~~~~~~~~~~~lVv~N~~~~ 666 (718)
T 2e8y_A 587 SINQLDWDRRETFKEDVHYIRRLISLRKAHPAFRLRSAADIQRHLECLTLKEHLIAYRLYDLDEVDEWKDIIVIHHASPD 666 (718)
T ss_dssp HHHSCCHHHHHHTHHHHHHHHHHHHHHHHCGGGGCCSHHHHHHHEEEEEECSSEEEEEECCCTTTCSSSEEEEEEECSSS
T ss_pred cccccCcccccccCHHHHHHHHHHHHHhhChhhccCchhhhccceEEecCCCCEEEEEEecCCCCCCCCeEEEEEeCCCC
Confidence 1 3589999999999999999999975 344556789999984 378899988653
Q ss_pred C-----CCCCCcEEeeeCCc
Q 015125 393 C-----PAGKEWTLATSGHK 407 (413)
Q Consensus 393 ~-----~~~~~~~~~~s~~~ 407 (413)
. |.++.|++++++..
T Consensus 667 ~~~~~lp~~g~~~~l~~~~~ 686 (718)
T 2e8y_A 667 SVEWRLPNDIPYRLLCDPSG 686 (718)
T ss_dssp EEEEECSSCSCEEEEEETTE
T ss_pred CEEEECCCCCcEEEEecCCC
Confidence 2 33467888887654
|
| >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-54 Score=451.65 Aligned_cols=352 Identities=13% Similarity=0.140 Sum_probs=249.6
Q ss_pred CceeEEEeeecCCCCC------ccHHHHHhhh-hhHHHcCCCEEEcCCCCCCCC--CCCCCcccCCCCCCCCCCHHHHHH
Q 015125 24 GREILFQGFNWESCKH------DWWRNLERKV-PDISKSGFTSVWLPPATHSFA--PEGYLPQNLYSLNSSYGSEHLLKA 94 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~------g~~~gi~~~L-~yLk~lGv~~I~L~Pi~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~ 94 (413)
...+|||++.++|+++ |+|++|+++| +|||+||||+||||||++++. +|||+|.||++|+|+|||.++||+
T Consensus 130 ~~~~iYei~~~~f~~~~~~g~~g~~~~i~~~ll~yl~~lGv~~i~l~Pi~~~~~~~~~GY~~~~y~~~~~~~Gt~~~~~~ 209 (617)
T 1m7x_A 130 APISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRY 209 (617)
T ss_dssp SCCEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEECGGGSCHHHHHH
T ss_pred CCcEEEEEEHHHhcCCCCCCCccCHHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcccccCCccCccCCCHHHHHH
Confidence 3478999999998753 5999999997 999999999999999999876 699999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHH
Q 015125 95 LLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDI 174 (413)
Q Consensus 95 Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l 174 (413)
||++||++||+||||+|+||++.+.... ..|.+.....+..+ ..+.. ..| +.++||++||+||++|
T Consensus 210 lv~~~H~~Gi~VilD~V~NH~~~~~~~~----~~~d~~~~y~~~~~----~~g~~-----~~w-~~~~ln~~~p~v~~~i 275 (617)
T 1m7x_A 210 FIDAAHAAGLNVILDWVPGHFPTDDFAL----AEFDGTNLYEHSDP----REGYH-----QDW-NTLIYNYGRREVSNFL 275 (617)
T ss_dssp HHHHHHHTTCEEEEEECTTSCCCSTTSS----TTGGGSCSSBCC---------------------CCCBCTTSHHHHHHH
T ss_pred HHHHHHHCCCEEEEEEecCcccCccchh----hhcCCCccccccCc----ccCCc-----CCC-CCceecCCCHHHHHHH
Confidence 9999999999999999999997754211 11221111101000 00000 011 2367999999999999
Q ss_pred HHHHHHHHhhcCCCeEeecccCCC------------------------cHHHHHHHHHhhC---C-CeEEEcccCCCCCC
Q 015125 175 IAWLRWLRNTVGFQDFRFDFARGY------------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYN 226 (413)
Q Consensus 175 ~~~~~~w~~~~gvDGfR~D~a~~i------------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~ 226 (413)
++++++|+++|||||||+|++++| +.+||+++.+.++ | .++|||.|...+
T Consensus 276 ~~~~~~W~~~~gvDGfR~D~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~~iaE~~~~~~-- 353 (617)
T 1m7x_A 276 VGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFP-- 353 (617)
T ss_dssp HHHHHHHHHHSCCCEEEECCSHHHHCC--------------CTTCCHHHHHHHHHHHHHHHHSSTTCEEEECCSSCCT--
T ss_pred HHHHHHHHHHhCcCEEEEcchhhhhhccccccccccccccccccCCchHHHHHHHHHHHHHHHCCCeEEEEeCCCCCc--
Confidence 999999998899999999998774 2579999988764 4 789999886521
Q ss_pred CCCCCCccchhhHhHhhhh-ccCCCcccccCccchHHHHHHhccchh-h--hhhhcCCCCCcccccCCcceecccCCCCC
Q 015125 227 SHGLDYNQDSHRQRIINWI-DGTGQLSAAFDFTTKGILQEAVKGQFW-R--LRDAQGKPPGVMGWWPSRAVTFLDNHDTG 302 (413)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~df~~~~~l~~~~~g~~~-~--~~~~~~~~~~~~~~~p~~~v~flenHD~~ 302 (413)
.+..+. ..+.++++.+++.+...+...+.++.. + ....+.. ..+. .......+++|||++
T Consensus 354 -------------~~~~~~~~~g~gfd~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~-~~~~~fv~~~nHD~~ 417 (617)
T 1m7x_A 354 -------------GVSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTF--GILY-NYTENFVLPLSHDEV 417 (617)
T ss_dssp -------------TTTBCTTTTBSCCSEEECHHHHHHHHHHHHSCGGGGGGCTHHHHG--GGTT-TTTSCEEEEECGGGS
T ss_pred -------------cceeeccCCCCccCcEeCCchHHHHHHHhccCccchhhhhccchh--hhhc-ccccceEEEeCCCCc
Confidence 111111 122346677887766655655543211 0 0000000 0000 011122334999998
Q ss_pred cCC-----CCCCCC----hhHHHHHHHHHhcCCCeeEEecCcccC------------Cc---------hhHHHHHHHHHH
Q 015125 303 STQ-----AHWPFP----SNHIMEGYAYILMHPGIPSVFYDHFYD------------WG---------DSIHNQIVKLMD 352 (413)
Q Consensus 303 R~~-----~~~~~~----~~~~~la~a~ll~~pGiP~Iy~G~E~g------------w~---------~~l~~~i~~L~~ 352 (413)
|.. +.+..+ ..++++|++++|++||+||||||+|+| |. .+++.++|+|++
T Consensus 418 ~~g~~~~~~~~~g~~~~~~~~~r~a~~~~l~~pG~P~iy~G~E~G~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~L~~ 497 (617)
T 1m7x_A 418 VHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNL 497 (617)
T ss_dssp STTSCCHHHHSCSSHHHHHHHHHHHHHHHHHSSSEEEEETTTTTTCSSCCCTTSCCCGGGGCSSCCHHHHHHHHHHHHHH
T ss_pred ccCccchhhhCCCcHHHHHHHHHHHHHHHHHCCCCcEEEcchhcCCCCCCCcccccChhhccccchhhHHHHHHHHHHHH
Confidence 642 223323 257899999999999999999999986 22 368999999999
Q ss_pred HHHhCcccCCCCe-----EEEE---ecCCEEEEEE----CCEEEEEEcCCCCC--------CCCCCcEEeeeCCc
Q 015125 353 VRRQQDIHSRSSI-----KILE---AQSNLYSAII----GDKVCMKIGDGSWC--------PAGKEWTLATSGHK 407 (413)
Q Consensus 353 lR~~~p~l~~G~~-----~~~~---~~~~~~~~~r----~~~~lv~lnn~~~~--------~~~~~~~~~~s~~~ 407 (413)
||+++|+|..|++ +.+. .++++++|.| ++.++|++|++... |.++.|++++++..
T Consensus 498 lR~~~~al~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~lvv~N~s~~~~~~~~i~~p~~g~~~~~l~sd~ 572 (617)
T 1m7x_A 498 TYRHHKAMHELDFDPYGFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHDYRFGINQPGKWREILNTDS 572 (617)
T ss_dssp HHTTCGGGTSCTTSGGGEEEEEEEETTTTEEEEEEECTTCCEEEEEEECSSCCEEEECCBCSSCSEEEEEEETTS
T ss_pred HHhhCHHhhcCCCCCCCeEEEeccCCCCeEEEEEEEcCCCCEEEEEECCCCCCccceEECCCCCCeEEEEEeCcc
Confidence 9999999998753 4443 3568999998 24789999986532 44578999987653
|
| >3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-55 Score=457.22 Aligned_cols=332 Identities=17% Similarity=0.150 Sum_probs=249.6
Q ss_pred ceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015125 25 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~ 102 (413)
..+||+++.+++++.|+|++|+++|+|||+||||+|||+||++.+ ++|||+|.|||+|+|+||++++||+||++||++
T Consensus 136 ~~~iYe~~v~~f~~~G~~~~~~~~L~yl~~lGv~~v~l~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~~~~~lv~~~H~~ 215 (618)
T 3m07_A 136 QAVVYEMHTGTFTPEGTFRAAIAKLPYLAELGVTVIEVMPVAQFGGERGWGYDGVLLYAPHSAYGTPDDFKAFIDAAHGY 215 (618)
T ss_dssp GCCEEEECHHHHSSSCSHHHHHTTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECTTTCCHHHHHHHHHHHHHT
T ss_pred hCeEEEEehhhcCCCCCHHHHHHHHHHHHHcCCCEEEeCChhccCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHC
Confidence 468999999999999999999999999999999999999997654 689999999999999999999999999999999
Q ss_pred CCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHH
Q 015125 103 KVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLR 182 (413)
Q Consensus 103 Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~ 182 (413)
||+||+|+|+||++.++++... | . ..|.. ..... ...+++|+++|+||++|++++++|+
T Consensus 216 Gi~VilD~V~NH~~~~~~~~~~-~---~---~~~~~---~~~~~-----------~wg~~ln~~~p~V~~~i~~~~~~w~ 274 (618)
T 3m07_A 216 GLSVVLDIVLNHFGPEGNYLPL-L---A---PAFFH---KERMT-----------PWGNGIAYDVDAVRRYIIEAPLYWL 274 (618)
T ss_dssp TCEEEEEECCSCCCSSSCCHHH-H---C---GGGEE---EEEEE-----------TTEEEECTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeecCccCCCCcccccc-c---C---chhhc---CCCCC-----------CCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988764321 1 0 01100 00001 1235799999999999999999999
Q ss_pred hhcCCCeEeecccCCC----cHHHHHHHHHhhC------CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcc
Q 015125 183 NTVGFQDFRFDFARGY----SAKYVKEYIEGAR------PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLS 252 (413)
Q Consensus 183 ~~~gvDGfR~D~a~~i----~~~~~~~~~~~~~------~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (413)
+++||||||+|+++++ +.+||+++.++++ +.++|||.|.+.+.. .. ...+ ...++++
T Consensus 275 ~~~gvDGfR~D~~~~~~~~~~~~f~~~l~~~v~~~~p~~~~~li~E~~~~~~~~------l~------~~~~-g~~g~~d 341 (618)
T 3m07_A 275 TEYHLDGLRFDAIDQIEDSSARHVLVEIAQRIREDITDRPIHLTTEDSRNIISL------HP------RDQD-GNAPLFT 341 (618)
T ss_dssp HHTTCSEEEETTGGGCCCCSSSCHHHHHHHHHHHHCCSSCCEEEECCSSCCCTT------SC------CCTT-SCCSSCS
T ss_pred HHhCccEEEecchhhhcccchHHHHHHHHHHHHHhCCCCCEEEEEEecCCchhh------hc------cccc-CCccccc
Confidence 9999999999999999 8899999988763 278999999763310 00 0000 0011256
Q ss_pred cccCccchHHHHHHhccchh------------hhhh----hcCCCCCc------------ccccCCcceecccCCCC---
Q 015125 253 AAFDFTTKGILQEAVKGQFW------------RLRD----AQGKPPGV------------MGWWPSRAVTFLDNHDT--- 301 (413)
Q Consensus 253 ~~~df~~~~~l~~~~~g~~~------------~~~~----~~~~~~~~------------~~~~p~~~v~flenHD~--- 301 (413)
+.+++.++..+...+.|+.. .+.. .+.....+ ....+...++|++|||+
T Consensus 342 ~~~n~~~~~~l~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~f~~~g~~s~~~~~~~G~~~~~~~~~~~v~fl~NHD~~gn 421 (618)
T 3m07_A 342 AEWNDDFHNAVHVFATGETQAYYNDFADAPEKHLARALAEGFAYQGEISPQTGEPRGVKSTGQPPVAFVDFIQNHDQVGN 421 (618)
T ss_dssp EEECHHHHHHHHHHHHCCCSGGGGGGCSCHHHHHHHHHHHSCSCSSCBCTTTSSBCCCCCTTSCGGGEEECSCCHHHHHT
T ss_pred eeechhHHHHHHHHhcCCccchhhhcccCcHHHHHHHHHHhhccCcccccccccccCCccccCChhhheeeecccccccc
Confidence 66666666555554433210 1111 11100000 01123478999999999
Q ss_pred ----CcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccCCc-------------------------------------
Q 015125 302 ----GSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWG------------------------------------- 340 (413)
Q Consensus 302 ----~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~gw~------------------------------------- 340 (413)
+|+.+.. +..++++|++++||+||+||||||+|+|..
T Consensus 422 r~~G~Rl~~~~--~~~~~~~a~alllt~PG~P~iy~G~E~G~~~pf~~f~d~~~~l~~~vr~gr~~e~~~f~~~~~~dP~ 499 (618)
T 3m07_A 422 RAQGDRLITLA--GAERTKVLLATLLLSPHIPLLFMGEEYGESRPFLFFTDFHGDLARAVREGRAKEFADHAGENVPDPN 499 (618)
T ss_dssp STTCCCHHHHH--CHHHHHHHHHHHHHSSSEEEEETTGGGTCCSCCCCCCCCCHHHHHHHHHHHHHTTGGGTTCCCCCTT
T ss_pred cccccchhhhc--CHHHHHHHHHHHHhCCCcCEEecchhhCCCCCccccccCchhhhhhhhccchhhhccCCcccCCCCC
Confidence 6665533 357899999999999999999999997652
Q ss_pred --------------------hhHHHHHHHHHHHHHhC--cccC---CCCeEEEEecCCEEEEEE---CCEEEEEEcCCCC
Q 015125 341 --------------------DSIHNQIVKLMDVRRQQ--DIHS---RSSIKILEAQSNLYSAII---GDKVCMKIGDGSW 392 (413)
Q Consensus 341 --------------------~~l~~~i~~L~~lR~~~--p~l~---~G~~~~~~~~~~~~~~~r---~~~~lv~lnn~~~ 392 (413)
.++++++|+|++||+++ |+|+ .+.++.+..+++++++.| ++.++|++|.+..
T Consensus 500 ~~~~~~~~~l~W~~~~~~~~~~ll~~~r~Li~lRr~~~~PaL~~~~~~~~~~~~~~~~vl~~~R~~~~~~llvv~Nls~~ 579 (618)
T 3m07_A 500 APETFQRSKLNWKQQHSEEGKAWLAFTRELLLLRQKHIVPLLSAARESSGTVLQTAPGFIAVSWRFPGGTLSLALNISAT 579 (618)
T ss_dssp SHHHHHTTSCCHHHHHSHHHHHHHHHHHHHHHHHHHHTHHHHTTCCSCCEEEEEEETTEEEEEEEETTEEEEEEEECSSS
T ss_pred ChhhcccccCChhhhcccccHHHHHHHHHHHHHHHhccCcccccCCCCceEEEecCCCEEEEEEEeCCCEEEEEEECCCC
Confidence 15899999999999999 8888 456777777889999988 4567788888653
|
| >3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-55 Score=453.48 Aligned_cols=329 Identities=14% Similarity=0.089 Sum_probs=249.2
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~G 103 (413)
.+||+++.++++++|+|++++++|+|||+||||+||||||++.+ .+|||+|.|||+|+|+||+++|||+||++||++|
T Consensus 102 ~~iYe~~~~~f~~~G~~~~~~~~l~~l~~lG~~~v~l~Pi~~~~~~~~~GY~~~~~~~~~~~~Gt~~d~~~lv~~~h~~G 181 (558)
T 3vgf_A 102 LIIYEIHVGTFTPEGTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKG 181 (558)
T ss_dssp CCEEEECHHHHSSSCSHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGTHHHHHHHHHHHHHHTT
T ss_pred cEEEEEeHHHhCCCCCHHHHHHHHHHHHHcCCcEEEECCcccCCCCCCcCcccccccccccccCCHHHHHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999998865 4789999999999999999999999999999999
Q ss_pred CEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCC-CCCHHHHHHHHHHHHHHH
Q 015125 104 VRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNID-HTQHFVRKDIIAWLRWLR 182 (413)
Q Consensus 104 i~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln-~~~~~vr~~l~~~~~~w~ 182 (413)
|+||+|+|+||++.++++....- .|.. ..+...|+. ..+++ ..+|+||++|++++++|+
T Consensus 182 i~VilD~V~NH~~~~~~~~~~~~--------~~~~---~~~~~~~g~---------~~n~~~~~~~~v~~~l~~~~~~w~ 241 (558)
T 3vgf_A 182 LGVILDVVYNHVGPEGNYMVKLG--------PYFS---QKYKTPWGL---------TFNFDDAESDEVRKFILENVEYWI 241 (558)
T ss_dssp CEEEEEECCSCCCSSSCCGGGTS--------CCEE---EEEEETTEE---------EECSSSTTHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeeccccCCCCcccccC--------CccC---CCCCCCCCC---------cccCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998876532110 0100 001111110 11122 357999999999999999
Q ss_pred hhcCCCeEeecccCCC----cHHHHHHHHHhhCC--CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccC
Q 015125 183 NTVGFQDFRFDFARGY----SAKYVKEYIEGARP--IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFD 256 (413)
Q Consensus 183 ~~~gvDGfR~D~a~~i----~~~~~~~~~~~~~~--~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d 256 (413)
+++||||||+|+++++ +.+||+++.+.++. .++|||.|.+.+ ..+..+...+.++++.|+
T Consensus 242 ~~~gvDGfR~D~~~~~~~~~~~~f~~~l~~~~~~~~~~~iaE~~~~~~--------------~~~~~~~~~g~g~d~~~~ 307 (558)
T 3vgf_A 242 KEYNVDGFRLSAVHAIIDTSPKHILEEIADVVHKYNRIVIAESDLNDP--------------RVVNPKEKCGYNIDAQWV 307 (558)
T ss_dssp HHHCCCEEEESCGGGCCCCSSSCHHHHHHHHHHHTTCEEEEECSSCCG--------------GGTSCGGGTCCCCSEEEC
T ss_pred HHhCCCEEEEecccccccccHHHHHHHHHHHHhhcCEEEEEecCCCCc--------------ceeccccCCCCceeeEEc
Confidence 9999999999999999 67899999887754 778999986532 222223233345778888
Q ss_pred ccchHHHHHHhccch----------hhhhhhcCCCCCc----------------ccccCCcceecccCCCC--CcCCCC-
Q 015125 257 FTTKGILQEAVKGQF----------WRLRDAQGKPPGV----------------MGWWPSRAVTFLDNHDT--GSTQAH- 307 (413)
Q Consensus 257 f~~~~~l~~~~~g~~----------~~~~~~~~~~~~~----------------~~~~p~~~v~flenHD~--~R~~~~- 307 (413)
+.++..+..++.+.. ..+...+...... ....|.+.++|++|||+ .|....
T Consensus 308 ~~~~~~l~~~~~~e~~~~~~d~~~~~~l~~~l~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~v~Fv~NHD~~gnr~~g~r 387 (558)
T 3vgf_A 308 DDFHHSIHAYLTGERQGYYTDFGNLDDIVKSYKDVFVYDGKYSNFRRKTHGEPVGELDGCNFVVYIQNHDQVGNRGKGER 387 (558)
T ss_dssp HHHHHHHHHHHHCCCSGGGGGCCCHHHHHHHHHHSCSCSSEEETTTTEEECCCCTTCCGGGEEECSCCHHHHHTSTTCCC
T ss_pred HHHHHHHHHHhcCCccccccccccHHHHHHHHHhhhccccccchhhhcccCCCcccCChHHheeeeeccchhcccccccc
Confidence 888888887764421 1222211100000 01234578999999998 554321
Q ss_pred C--CCChhHHHHHHHHHhcCCCeeEEecCcccCCc---------------------------------------------
Q 015125 308 W--PFPSNHIMEGYAYILMHPGIPSVFYDHFYDWG--------------------------------------------- 340 (413)
Q Consensus 308 ~--~~~~~~~~la~a~ll~~pGiP~Iy~G~E~gw~--------------------------------------------- 340 (413)
+ ..+..++++|++++||+||+||||||+|+|..
T Consensus 388 ~~~~~~~~~~~la~al~lt~pG~P~Iy~G~E~g~~~p~~~f~d~~d~~l~~~v~~Gr~~ef~~~~dp~~~~~f~~~~~~w 467 (558)
T 3vgf_A 388 IIKLVDRESYKIAAALYLLSPYIPMIFMGEEYGEENPFYFFSDFSDSKLIQGVREGRKKENGQDTDPQDESTFNASKLSW 467 (558)
T ss_dssp GGGTSCHHHHHHHHHHHHTSSSEEEEETTGGGTCCSCCCCCCCCCSHHHHHHHHHHHHHHHCCCSCTTSHHHHHHTSCCC
T ss_pred ccccCCHHHHHHHHHHHHhCCCcceeecChhhcCCCCCcccccCCCHHHHHHHhhhhhccccCCCCCCchhhhhccCCCh
Confidence 1 12567899999999999999999999998632
Q ss_pred -h--hHHHHHHHHHHHHHhCcccCCCCeEE-EEecCCEEEEEECCEEEEEEcCCC
Q 015125 341 -D--SIHNQIVKLMDVRRQQDIHSRSSIKI-LEAQSNLYSAIIGDKVCMKIGDGS 391 (413)
Q Consensus 341 -~--~l~~~i~~L~~lR~~~p~l~~G~~~~-~~~~~~~~~~~r~~~~lv~lnn~~ 391 (413)
. ++++++|+|++||+++| ..|.... ...++++++|.| +.++|++|.+.
T Consensus 468 ~~~~~l~~~~r~L~~lR~~~~--~~g~~~~~~~~~~~vla~~R-~~vlVv~N~s~ 519 (558)
T 3vgf_A 468 KIDEEIFSFYKILIKMRKELS--IACDRRVNVVNGENWLIIKG-REYFSLYVFSK 519 (558)
T ss_dssp CCCHHHHHHHHHHHHHHHHTT--CTTCCCCEEEECSSEEEEEC-SSCEEEEESSC
T ss_pred hHHHHHHHHHHHHHHHHhhCc--cCCCceeEEcCCCeEEEEEc-CeEEEEEECCC
Confidence 1 58999999999999999 5666643 445578999999 88999999965
|
| >1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-54 Score=446.07 Aligned_cols=333 Identities=14% Similarity=0.123 Sum_probs=244.0
Q ss_pred ceeEEEeeecCCCCCccHHHHHhhhh-hHHHcCCCEEEcCCCC-CCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 015125 25 REILFQGFNWESCKHDWWRNLERKVP-DISKSGFTSVWLPPAT-HSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~g~~~gi~~~L~-yLk~lGv~~I~L~Pi~-~~~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~ 101 (413)
++|+++.|.-++. .|+|++|+++|+ |||+| ||+|||+||+ ++++ +|||+|.||++|+|+|||++||++||+
T Consensus 3 n~i~~~sf~d~~~-gg~~~~i~~~ld~yL~~L-v~~IwL~Pi~~~~~~~~~GY~~~dy~~idp~~Gt~~df~~Lv~---- 76 (504)
T 1r7a_A 3 NKVQLITYADRLG-DGTIKSMTDILRTRFDGV-YDGVHILPFFTPFDGADAGFDPIDHTKVDERLGSWDDVAELSK---- 76 (504)
T ss_dssp SSCEEEECSSSBS-SSSHHHHHHHHHHHSTTT-CCEEEECCCEECSSSSSTTSSCSEEEEECTTTCCHHHHHHHHT----
T ss_pred ccEeeeeeEeccC-CCCHHHHHHHHHHHHHHH-hCeEEECCcccCCCCCCCCCCccChhhcCcccCCHHHHHHHHh----
Confidence 4789999984322 789999999998 99999 9999999999 8886 999999999999999999999999996
Q ss_pred cCCEEEEEEccccCcCCCCCCC--------CcccccCCCCCC-CCCCCee-c----cC---CCCC---------CCcCCC
Q 015125 102 HKVRAMADIVINHRVGTTQGHG--------GKYNRYDGIPLS-WDEHAVT-S----CT---GGLG---------NGSTGD 155 (413)
Q Consensus 102 ~Gi~VilD~V~NH~~~~~~~~~--------~~y~~~~~~~~~-~~~~~~~-~----~~---~~~~---------~~~~~~ 155 (413)
||+||||+|+||++.+++|+. +.|..|--...+ |...... . +. +.+. ......
T Consensus 77 -Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 155 (504)
T 1r7a_A 77 -THNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGIYRPRPGLPFTHYKFAGKTRLVWVS 155 (504)
T ss_dssp -TSEEEEEEECSEEETTSHHHHHHHHHGGGSTTGGGBCBHHHHCTTCBCHHHHHTSCCSSSSCSEEEEEETTEEEEEECS
T ss_pred -CCEEEEEECCCcCCCcchHHHHHhhcCCCCccccceEeccccCcCCCCCcchhhhcCCCCCCCCCCceEcCCceEEECc
Confidence 999999999999999987542 233221100000 1000000 0 00 0000 000112
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc-------------HHHHHHHHHhhC--CCeEEEccc
Q 015125 156 NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-------------AKYVKEYIEGAR--PIFSVGEYW 220 (413)
Q Consensus 156 ~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~-------------~~~~~~~~~~~~--~~~~vgE~~ 220 (413)
....+||||++||+||++|++++++|+ ++||||||+|+++++. .++++++.+.++ +.++|||.|
T Consensus 156 f~~~~pdLn~~np~Vr~~i~~~~~~W~-~~gvDGfR~Da~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~igE~~ 234 (504)
T 1r7a_A 156 FTPQQVDIDTDSDKGWEYLMSIFDQMA-ASHVSYIRLDAVGYGAKEAGTSCFMTPKTFKLISRLREEGVKRGLEILIEVH 234 (504)
T ss_dssp SSTTEEEBCTTSHHHHHHHHHHHHHHH-HTTCCEEEEETGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred cCCCCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEcccccccccCCCcccCchhHHHHHHHHHHHhCcCCcEEEEEec
Confidence 236789999999999999999999998 9999999999998763 235566655442 478999998
Q ss_pred CCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHh-ccchhhhhhhcCCCCCcccccCCcceecccCC
Q 015125 221 DSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNH 299 (413)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~-~g~~~~~~~~~~~~~~~~~~~p~~~v~flenH 299 (413)
.. | ..... ...+++++|+|.+...+..++ .+....+..... ..|...++|++||
T Consensus 235 ~~---------~------~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~-------~~p~~~~nfl~nH 289 (504)
T 1r7a_A 235 SY---------Y------KKQVE---IASKVDRVYDFALPPLLLHALSTGHVEPVAHWTD-------IRPNNAVTVLDTH 289 (504)
T ss_dssp SC---------H------HHHHH---HHTTSSEEEECSHHHHHHHHHHHCCCHHHHHHHH-------HSCSSEEECSCCS
T ss_pred cc---------c------ccccc---cCCccceEECchhhhhhhhhhhccchHHHHHHHH-------hCccccceecccC
Confidence 64 0 11111 123567899999876666665 333333332211 1245679999999
Q ss_pred CCCcCCCC--------------------------------------------------------CCCChhHHHHHHHHHh
Q 015125 300 DTGSTQAH--------------------------------------------------------WPFPSNHIMEGYAYIL 323 (413)
Q Consensus 300 D~~R~~~~--------------------------------------------------------~~~~~~~~~la~a~ll 323 (413)
|+.|+... ++....++++|++++|
T Consensus 290 D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~~~~~~~la~a~ll 369 (504)
T 1r7a_A 290 DGIGVIDIGSDQLDRSLKGLVPDEDVDNLVNTIHANTHGESQAATGAAASNLDLYQVNSTYYSALGCNDQHYIAARAVQF 369 (504)
T ss_dssp SCBCSTTTSCCSSCTTSCCSSCHHHHHHHHHHHHHHTTTHHHHHSGGGSBCSCSSSBCSCHHHHTTTCHHHHHHHHHHHH
T ss_pred CcccccccccccccccccccCCHHHHHHHHHHHhhccccccccccccccccCCccccccchhhhccCcHHHHHHHHHHHH
Confidence 99996421 1223467899999999
Q ss_pred cCCCeeEEecCcccCCc------------------------------hhHHHHHHHHHHHHHhCcccCCCCeEEEEecCC
Q 015125 324 MHPGIPSVFYDHFYDWG------------------------------DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSN 373 (413)
Q Consensus 324 ~~pGiP~Iy~G~E~gw~------------------------------~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~ 373 (413)
|+||+|+||||+|+|.. .+++.++++|++||+++|+| .|+++....+++
T Consensus 370 t~pG~P~iy~GdE~G~~~~~~~~~~~~~~r~~~r~~~~W~~~~~~~~~~~~~~~~~Li~lRk~~~al-~G~~~~~~~~~~ 448 (504)
T 1r7a_A 370 FLPGVPQVYYVGALAGKNDMELLRKTNNGRDINRHYYSTAEIDENLKRPVVKALNALAKFRNELDAF-DGTFSYTTDDDT 448 (504)
T ss_dssp HSSSEEEEEHHHHTTCCCCHHHHHHHCBGGGGGCCCBCHHHHHHHTTSHHHHHHHHHHHHHHHCGGG-GSEEEEEEETTT
T ss_pred hCCCceEEEeccccccCCCccccccccCCCCcccCCCChhHhhhhhhhHHHHHHHHHHHHHhhCccc-cCceEEecCCCC
Confidence 99999999999997632 24889999999999999999 999988777788
Q ss_pred EEEEEE---CCEEEEEEcCCC
Q 015125 374 LYSAII---GDKVCMKIGDGS 391 (413)
Q Consensus 374 ~~~~~r---~~~~lv~lnn~~ 391 (413)
+++|.| ++.++|++|.+.
T Consensus 449 v~af~R~~~~~~~lv~~N~~~ 469 (504)
T 1r7a_A 449 SISFTWRGETSQATLTFEPKR 469 (504)
T ss_dssp EEEEEEECSSCEEEEEECGGG
T ss_pred EEEEEEECCCeEEEEEEECCC
Confidence 999998 467888998854
|
| >1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-53 Score=453.44 Aligned_cols=363 Identities=17% Similarity=0.208 Sum_probs=253.4
Q ss_pred CceeEEEeeecCCCC---------CccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--------------CCCCCCcccCC
Q 015125 24 GREILFQGFNWESCK---------HDWWRNLERKVPDISKSGFTSVWLPPATHSF--------------APEGYLPQNLY 80 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~---------~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--------------~~~gY~~~d~~ 80 (413)
...+||+++.++|+. .|+|++|+++|+|||+||||+||||||+++. .+|||+|.||+
T Consensus 177 ~~~vIYe~hv~~f~~~~~~~~~~~~Gt~~gl~~~l~yLk~LGvt~V~L~Pi~~~~~~~~~~~~~~~g~~~~wGY~~~dy~ 256 (750)
T 1bf2_A 177 KDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYF 256 (750)
T ss_dssp GGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHTHHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCBSCSS
T ss_pred cccEEEEEEhhHhhCcCCCCCccCCcCHHHHHHHHHHHHHcCCCEEEECCcccCccccccccccccccccccCcCccccc
Confidence 447999999997655 4899999999999999999999999999975 35899999999
Q ss_pred CCCCCCCC-------HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCC---CCeeccCCCCCC
Q 015125 81 SLNSSYGS-------EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDE---HAVTSCTGGLGN 150 (413)
Q Consensus 81 ~id~~~Gt-------~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~---~~~~~~~~~~~~ 150 (413)
+|+|+||| .+|||+||++||++||+||||+|+||++.++++....-..+. ...|.. .......+...
T Consensus 257 ~~~~~yGt~~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~d~~~~p--~~~~~~~d~~~~y~~~~~~~- 333 (750)
T 1bf2_A 257 SPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTAT--IYSWRGLDNATYYELTSGNQ- 333 (750)
T ss_dssp CBCGGGCSCCSTTHHHHHHHHHHHHHHHTTCEEEEEECCSSCTTCSBSSSSCSSCBB--CSSHHHHHHHHHBCBCTTSS-
T ss_pred ccCccccCCCCCccHHHHHHHHHHHHHHCCCEEEEEEecccccCcccccccccccCC--CcccccCCCCcceEECCCCC-
Confidence 99999999 999999999999999999999999999998875421000000 000000 00000011000
Q ss_pred CcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHH----------------------------H
Q 015125 151 GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAK----------------------------Y 202 (413)
Q Consensus 151 ~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~----------------------------~ 202 (413)
.....+..+++||+++|+||++|++++++|++++||||||||+|++++.+ +
T Consensus 334 -~~~~~~g~~~~ln~~~p~V~~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 412 (750)
T 1bf2_A 334 -YFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGNSCLNGAYTASAPNCPNGGYNFDAADSNVAI 412 (750)
T ss_dssp -SBCCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTSCCCEEEETTGGGGGBCCSSSSCCTTSTTCTTCSCCBCTTCTTSHH
T ss_pred -ceecCCCcCCccccCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhcCchhhhcccccccccccccccccccccchHHH
Confidence 00111234589999999999999999999998899999999999987644 5
Q ss_pred HHHHHHh-h------CCCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhcc---c--
Q 015125 203 VKEYIEG-A------RPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG---Q-- 270 (413)
Q Consensus 203 ~~~~~~~-~------~~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g---~-- 270 (413)
++++.+. + .++++|||.|...+. .|. +..| ....+.|+..++..++.++.| +
T Consensus 413 ~~~i~~~~~~~~~~g~~~~liaE~w~~~~~-----~~~-------~~~F----~~~~~~wn~~~rd~l~~f~~g~~~~~~ 476 (750)
T 1bf2_A 413 NRILREFTVRPAAGGSGLDLFAEPWAIGGN-----SYQ-------LGGF----PQGWSEWNGLFRDSLRQAQNELGSMTI 476 (750)
T ss_dssp HHHHHHSCBCCTTCCSSBEEEECCCCSSTT-----CCC-------TTCS----CTTCEEECHHHHHHHHHHHHCBTTBCC
T ss_pred HHHHHhCcchhhccCCCceEEeccccCCcc-----chh-------hccC----CccHHHHhHHHHHHHHHHhcCCCCCCC
Confidence 6666554 2 336789999975310 010 0001 011245666677777776655 2
Q ss_pred -hhhhhhhcCCCCCcc---cccCCcceecccCCCCCcCCCCC-------------CC-----------------------
Q 015125 271 -FWRLRDAQGKPPGVM---GWWPSRAVTFLDNHDTGSTQAHW-------------PF----------------------- 310 (413)
Q Consensus 271 -~~~~~~~~~~~~~~~---~~~p~~~v~flenHD~~R~~~~~-------------~~----------------------- 310 (413)
...+...+......+ +..|...++|++|||+.|+...+ +.
T Consensus 477 ~~~~l~~~l~~~~~~y~~~~~~p~~~vnfv~nHD~~~l~dl~s~~~~~n~~~~~~G~n~dG~~~n~s~n~g~~g~t~~~~ 556 (750)
T 1bf2_A 477 YVTQDANDFSGSSNLFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDGGTSTNYSWDQGMSAGTGAAV 556 (750)
T ss_dssp CHHHHHHHHTTCHHHHGGGTCCGGGEEECSCCSSSCCHHHHTTCSSCCCCCCTTSCCCCCCCSCCCCCCTTTTTTSCCHH
T ss_pred CHHHHHHHhhcchhhhccCCCCcceEEEEeecCCCCcHHHHHhhhcccchhhhhccCCCCCccccccccccccCCchhhH
Confidence 233333332111111 12456789999999998752111 00
Q ss_pred -ChhHHHHHHHHHhcCCCeeEEecCcccC--------------------Cc-----hhHHHHHHHHHHHHHhCcccCCCC
Q 015125 311 -PSNHIMEGYAYILMHPGIPSVFYDHFYD--------------------WG-----DSIHNQIVKLMDVRRQQDIHSRSS 364 (413)
Q Consensus 311 -~~~~~~la~a~ll~~pGiP~Iy~G~E~g--------------------w~-----~~l~~~i~~L~~lR~~~p~l~~G~ 364 (413)
...++++|++++|++||+||||||+|+| |+ .++++++++|++||+++|+|+.+.
T Consensus 557 ~r~~~~r~a~a~ll~~~G~P~i~~GdE~g~t~~G~~n~y~~~~~i~~~dW~~~~~~~~l~~~~~~Li~lRk~~pal~~~~ 636 (750)
T 1bf2_A 557 DQRRAARTGMAFEMLSAGTPLMQGGDEYLRTLQCNNNAYNLDSSANWLTYSWTTDQSNFYTFAQRLIAFRKAHPALRPSS 636 (750)
T ss_dssp HHHHHHHHHHHHHHHSSSEEEEETTGGGTCCCTTCSCCTTCCSTTTSCCCCCCHHHHHHHHHHHHHHHHHHHCGGGSCSS
T ss_pred HHHHHHHHHHHHHHHcCCcceeeechhhccCCCCCCCcccCCCcccccCCCccccchHHHHHHHHHHHHHhhChhhcCCc
Confidence 0136899999999999999999999975 22 369999999999999999999986
Q ss_pred e------EEEE-------------ecCCEEEEEEC-------CEEEEEEcCCCCC-----C---CCCCcEEeeeCC
Q 015125 365 I------KILE-------------AQSNLYSAIIG-------DKVCMKIGDGSWC-----P---AGKEWTLATSGH 406 (413)
Q Consensus 365 ~------~~~~-------------~~~~~~~~~r~-------~~~lv~lnn~~~~-----~---~~~~~~~~~s~~ 406 (413)
+ ..+. .+.++++|.|. +.++|++|..... | .+..|+.+++..
T Consensus 637 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~la~~r~~~~~~~~~~~~vv~N~~~~~~~~~lp~~~~g~~w~~~~~t~ 712 (750)
T 1bf2_A 637 WYSGSQLTWYQPSGAVADSNYWNNTSNYAIAYAINGPSLGDSNSIYVAYNGWSSSVTFTLPAPPSGTQWYRVTDTC 712 (750)
T ss_dssp CCCTTTEEEECTTSSBCCHHHHTCTTCCEEEEEECGGGGTCSSCEEEEEECSSSCEEEECCCCSSSSCEEEEEECS
T ss_pred ccccCcEEEecCCCCccCcccccCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCEEEECCCCCCCCcEEEEecCC
Confidence 5 3322 13579999883 3688888885422 3 234798888765
|
| >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-53 Score=445.81 Aligned_cols=350 Identities=17% Similarity=0.184 Sum_probs=255.0
Q ss_pred eeEEEeeecCCCCCccHHHHHhhh-hhHHHcCCCEEEcCCCCCCCC--CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015125 26 EILFQGFNWESCKHDWWRNLERKV-PDISKSGFTSVWLPPATHSFA--PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L-~yLk~lGv~~I~L~Pi~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~ 102 (413)
.+||+++.+++...|+|++|+++| +|||+||||+||||||++++. +|||+|.|||+|+++|||+++|++||++||++
T Consensus 246 ~~IYE~h~~s~~~~G~~~~l~~~l~~yLk~lG~t~I~L~Pi~e~~~~~~wGY~~~~y~a~~~~yGt~~dfk~lV~~~H~~ 325 (722)
T 3k1d_A 246 MSTYEVHLGSWRPGLSYRQLARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVTSYYAPTSRFGTPDDFRALVDALHQA 325 (722)
T ss_dssp CEEEEECTTTSSTTCCHHHHHHHHHHHHHHHTCSEEEESCCEECSCGGGTTCSCSEEEEECGGGCCHHHHHHHHHHHHHT
T ss_pred eEEEEEehhhccCCCCHHHHHHHHHHHHHHcCCCeEEECCcccCCCCCCCCCCcccCcCccccCCCHHHHHHHHHHHHHc
Confidence 589999999999899999999998 999999999999999999874 79999999999999999999999999999999
Q ss_pred CCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHH
Q 015125 103 KVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLR 182 (413)
Q Consensus 103 Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~ 182 (413)
||+||||+|+||++.+.... ..|.+.+...+. ++.. .....| +.++||+.+|+||++|++++++|+
T Consensus 326 GI~VilD~V~NH~~~~~~~~----~~fdg~~~y~~~-------d~~~--~~~~~W-g~~~ln~~~p~Vr~~l~~~~~~Wl 391 (722)
T 3k1d_A 326 GIGVIVDWVPAHFPKDAWAL----GRFDGTPLYEHS-------DPKR--GEQLDW-GTYVFDFGRPEVRNFLVANALYWL 391 (722)
T ss_dssp TCEEEEEECTTCCCCCTTTT----TTTTSSCCSBCC-------CCCS--SSTTCC-CCCCBCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEeeccCCccchh----hcCCCCcccccC-------Cccc--CccCCC-CCeeecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999874321 112211111111 1000 000112 346899999999999999999999
Q ss_pred hhcCCCeEeecccCCC------------------------cHHHHHHHHHhhC---C-CeEEEcccCCCCCCCCCCCCcc
Q 015125 183 NTVGFQDFRFDFARGY------------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLDYNQ 234 (413)
Q Consensus 183 ~~~gvDGfR~D~a~~i------------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~~~~ 234 (413)
+++||||||+|++++| +.+||+++++.++ | .++|||.|...+.
T Consensus 392 ~~~gvDGfR~Dav~~mly~d~~r~~g~w~~n~~gg~~n~~~~~fl~~l~~~v~~~~P~~~~iaE~~t~~p~--------- 462 (722)
T 3k1d_A 392 QEFHIDGLRVDAVASMLYLDYSRPEGGWTPNVHGGRENLEAVQFLQEMNATAHKVAPGIVTIAEESTPWSG--------- 462 (722)
T ss_dssp HHSCCCEEEECCTHHHHBCCCCCCSSCCSCCCSSCSBCHHHHHHHHHHHHHHHHHSTTCEEEECCCSSCCC---------
T ss_pred HHhCCCEEEEcchhhhhhccccccccccccccCCCccChHHHHHHHHHHHHHHHhCCCeEEEEEecCCCcc---------
Confidence 8899999999998766 4689999988764 4 7889998765220
Q ss_pred chhhHhHhhhhccCCCcccccCccchHHHHHHhccc-hhh-hh-hhcCCCCCcccccCCcceecccCCCCC-----cCCC
Q 015125 235 DSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ-FWR-LR-DAQGKPPGVMGWWPSRAVTFLDNHDTG-----STQA 306 (413)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~-~~~-~~-~~~~~~~~~~~~~p~~~v~flenHD~~-----R~~~ 306 (413)
........+.+++..+++.+...+...+..+ ..+ .. .... ...+ ......++++.|||+. |+.+
T Consensus 463 -----v~~~~~~gGlGfd~~wn~~~~~d~l~y~~~~~~~r~~~~~~lt--~~~~-ya~~e~f~l~~sHD~~~~Gk~~ll~ 534 (722)
T 3k1d_A 463 -----VTRPTNIGGLGFSMKWNMGWMHDTLDYVSRDPVYRSYHHHEMT--FSML-YAFSENYVLPLSHDEVVHGKGTLWG 534 (722)
T ss_dssp -----TTSCGGGTCCCCSEEECHHHHHHHHHHHHSCGGGGGGGHHHHH--GGGG-TTTSSCEEEEECGGGSSTTSCCHHH
T ss_pred -----cccccccCCCccccccccchHHHHHHHHhcCchhhhhhhhccc--hhhh-hhcccceecccCcchhccCccchhh
Confidence 0111112233567777777655555554322 111 10 0000 0000 0111236678999998 5555
Q ss_pred CCCCC----hhHHHHHHHHHhcCCCeeEEecCcccCC--------------------chhHHHHHHHHHHHHHhCcccCC
Q 015125 307 HWPFP----SNHIMEGYAYILMHPGIPSVFYDHFYDW--------------------GDSIHNQIVKLMDVRRQQDIHSR 362 (413)
Q Consensus 307 ~~~~~----~~~~~la~a~ll~~pGiP~Iy~G~E~gw--------------------~~~l~~~i~~L~~lR~~~p~l~~ 362 (413)
.+..+ ..+++++++++|++||+||||||+|+|- ...+..++++|++||+++|+|..
T Consensus 535 ~~~gd~~~~~a~lr~~~a~~lt~PG~plif~G~E~G~~~e~~~~~~l~W~~~~~~~~~~~l~~~~~~Ln~lR~~~paL~~ 614 (722)
T 3k1d_A 535 RMPGNNHVKAAGLRSLLAYQWAHPGKQLLFMGQEFGQRAEWSEQRGLDWFQLDENGFSNGIQRLVRDINDIYRCHPALWS 614 (722)
T ss_dssp HSCSSHHHHHHHHHHHHHHHHHSSSEEEEETTGGGTCCSCCCTTTCCCGGGGGSSSSHHHHHHHHHHHHHHHHHCGGGTT
T ss_pred hCCCcHHHHHHHHHHHHHHHHhCCCeeEEecccccccccccccccccCcccccCccccHHHHHHHHHHHHHHHhChhhhc
Confidence 55434 3468899999999999999999999852 23689999999999999999974
Q ss_pred -----CCeEEEEe---cCCEEEEEE----CCEEEEEEcCCCCC--------CCCCCcEEeeeCC
Q 015125 363 -----SSIKILEA---QSNLYSAII----GDKVCMKIGDGSWC--------PAGKEWTLATSGH 406 (413)
Q Consensus 363 -----G~~~~~~~---~~~~~~~~r----~~~~lv~lnn~~~~--------~~~~~~~~~~s~~ 406 (413)
+.++.+.. ++++++|.| ++.++||+|+++.. |..+.|++++++.
T Consensus 615 ~d~~~~gf~wi~~~d~~~~viaf~R~~~~~~~llvv~N~s~~~~~~y~igvp~~G~~~eilnsd 678 (722)
T 3k1d_A 615 LDTTPEGYSWIDANDSANNVLSFMRYGSDGSVLACVFNFAGAEHRDYRLGLPRAGRWREVLNTD 678 (722)
T ss_dssp TTTSGGGEEEEEEEETTTTEEEEEEECTTSCEEEEEEECSSSCEEEEEEEESSCEEEEEEEETT
T ss_pred cccCCCceEEEEccCCCCCEEEEEEEcCCCCEEEEEEeCCCCCceeEEeccCCCCEEEEEeeCc
Confidence 45666554 468999998 24688899997632 4567799988764
|
| >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-54 Score=451.45 Aligned_cols=336 Identities=13% Similarity=0.113 Sum_probs=245.3
Q ss_pred eeEEEeeecCCC-------------------CCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-------CCCCCcccC
Q 015125 26 EILFQGFNWESC-------------------KHDWWRNLERKVPDISKSGFTSVWLPPATHSFA-------PEGYLPQNL 79 (413)
Q Consensus 26 ~~i~~~f~~~~~-------------------~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-------~~gY~~~d~ 79 (413)
.+|||++.+.|+ ..|+|+|++++|+|||+||||+||||||+++.. +|||+|.||
T Consensus 84 ~~iYe~~~~~f~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~l~~lG~~~v~l~Pi~~~~~~~~~g~~~~gY~~~~~ 163 (637)
T 1gjw_A 84 SVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNP 163 (637)
T ss_dssp CCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCHHHHHHTHHHHHHHTCCEEEECCCEEECCSSCSSSSCCTTSEEEE
T ss_pred CeEEEEeeccccCCCCCCCCccccccccchhccccHHHHHHHHHHHHHcCCCEEEeCCCeecccccccCCCCCccCCCCc
Confidence 799999997554 238999999999999999999999999998753 469999999
Q ss_pred CCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccC---CCC------C--C-----
Q 015125 80 YSLNSSYGS--------EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYD---GIP------L--S----- 135 (413)
Q Consensus 80 ~~id~~~Gt--------~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~---~~~------~--~----- 135 (413)
++++|+||+ .++||+||++||++||+||||+|+||++.++++......+|. ... + .
T Consensus 164 ~~~~~~~g~~~~~~~~~~~~~~~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~~~p~~f~~~~~~~~~~y~~p~~~~l~~~ 243 (637)
T 1gjw_A 164 MELDERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRAEELPFK 243 (637)
T ss_dssp EEECGGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEEEEECTTEEETTCGGGTTCGGGSCCEEGGGSTTCCCCCCTTSCSB
T ss_pred CCcCcccCCCcccccchHHHHHHHHHHHHHCCCEEEEEECcCCCcCcchhhhhCCceeEecccccccccCCccccccccC
Confidence 999999999 699999999999999999999999999998875332111110 000 0 0
Q ss_pred ----------------------CCC-------C---------------------Ce--eccCCCCC----CCcCCC----
Q 015125 136 ----------------------WDE-------H---------------------AV--TSCTGGLG----NGSTGD---- 155 (413)
Q Consensus 136 ----------------------~~~-------~---------------------~~--~~~~~~~~----~~~~~~---- 155 (413)
|.. . +. ..+ .+|. .+|...
T Consensus 244 ~~~~~~~~~~Y~~~~~~~~~~~f~~~~~~~~p~~w~~~~~~~g~~~~~~~~~fg~~~~~~~-~dw~~~~~~~w~d~~~l~ 322 (637)
T 1gjw_A 244 VPDEDELEIIYNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNILELIVKEFGIITPPGF-SDLINDPQPTWDDVTFLR 322 (637)
T ss_dssp CCCHHHHHHHHTSHHHHHHHTTBCCCHHHHCHHHHHHHHTCSSCHHHHHHHHHSEECCCBC-CSSBTCCSCCBTTEEECC
T ss_pred CcccccccccccChhhhhhhhhcccCccccChhhcccccccccchhhhhhhccccccCccc-ccccccCCCCcccceeee
Confidence 000 0 00 000 0000 000000
Q ss_pred ------------------CC-------CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhh
Q 015125 156 ------------------NF-------HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGA 210 (413)
Q Consensus 156 ------------------~~-------~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~ 210 (413)
.+ ..++++|++||+||++|++++++|++++||||||||+|++++.+||+++.+++
T Consensus 323 ~~~~~p~~~~~~~~~~~~dy~~f~~~~~~~~~ln~~np~V~~~l~d~~~~W~~e~gvDGfRlD~a~~l~~~f~~~~~~~v 402 (637)
T 1gjw_A 323 LYLDHPEASKRFLDPNQPPYVLYDVIKASKFPGKEPNRELWEYLAGVIPHYQKKYGIDGARLDMGHALPKELLDLIIKNV 402 (637)
T ss_dssp CBSSCCGGGGGGSCTTCCCCCCHHHHCTTTSCCSSBCHHHHHHHTTHHHHHHHHHCCCEEEESSGGGSCHHHHHHHHHHH
T ss_pred cccCCchhhhhccccCCCcceecchhhhcccCcccCCHHHHHHHHHHHHHHhhhcCCceEEecchhhCCHHHHHHHHHHH
Confidence 00 12556799999999999999999998899999999999999999999998876
Q ss_pred C---C-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccchhhhhhhcCCCCCccc
Q 015125 211 R---P-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMG 286 (413)
Q Consensus 211 ~---~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 286 (413)
+ | +++|||.|.... -..|.. +++++++++.+.... . ......+.... .
T Consensus 403 ~~~~p~~~ligE~~~~~~----------------~~~~~~--~gfd~~~~~~~~~~~--~-~~~~~~~~~~l-------~ 454 (637)
T 1gjw_A 403 KEYDPAFVMIAEELDMEK----------------DKASKE--AGYDVILGSSWYFAG--R-VEEIGKLPDIA-------E 454 (637)
T ss_dssp HHHCTTCEEEECCCCGGG----------------HHHHHH--HTCSEECCCHHHHHT--C-TTTGGGHHHHH-------H
T ss_pred HHhCCCeEEEEeCCCCcc----------------hhhHhh--cCCceEeccchhccc--c-HHHHHHHHHhh-------h
Confidence 4 4 678999996410 112332 235566776543220 0 01111222111 2
Q ss_pred ccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCC-CeeEEecCcccC---------------------------
Q 015125 287 WWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHP-GIPSVFYDHFYD--------------------------- 338 (413)
Q Consensus 287 ~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~p-GiP~Iy~G~E~g--------------------------- 338 (413)
..+..+++|++|||++|+.+.+. ...+.++|+++++++| |+||||||+|+|
T Consensus 455 ~~~~~~v~fl~nHD~~Rl~~~~~-~~~~~~~a~~l~l~~~~GiP~iy~GdE~G~~~p~~~g~~~d~~~R~~~~~~Dp~~~ 533 (637)
T 1gjw_A 455 ELVLPFLASVETPDTPRIATRKY-ASKMKKLAPFVTYFLPNSIPYVNTGQEIGEKQPMNLGLDTDPNLRKVLSPTDEFFG 533 (637)
T ss_dssp TCSSCEEECSCCTTSCCGGGSTT-HHHHHHHHHHHHHTSTTEEEEEETTGGGTCCSCSCCCSSCCGGGGGCSCTTSTTTT
T ss_pred ccchHHhhcccCCCccccccccc-CcHHHHHHHHHHHHcCCCCcEEEeeeecCccCccccCCCCCccccccccccCcccc
Confidence 24557899999999999998775 3456788899999998 999999999985
Q ss_pred -----------C---chhHHHHHHHHHHHHHhCccc-CCCCeEEEEecCCEEEEEE---CCEEEEEEcCCCC
Q 015125 339 -----------W---GDSIHNQIVKLMDVRRQQDIH-SRSSIKILEAQSNLYSAII---GDKVCMKIGDGSW 392 (413)
Q Consensus 339 -----------w---~~~l~~~i~~L~~lR~~~p~l-~~G~~~~~~~~~~~~~~~r---~~~~lv~lnn~~~ 392 (413)
| +.++++++|+|++||+++|+| +.|.++.+ .++++++|.| ++.++|++|++..
T Consensus 534 ~~~~~~~~~l~W~~~~~~l~~~~~~Li~lRk~~paL~~~g~~~~~-~~~~vlaf~R~~~~~~~lvv~N~~~~ 604 (637)
T 1gjw_A 534 KLAFFDHYVLHWDSPDRGVLNFIKKLIKVRHEFLDFVLNGKFENL-TTKDLVMYSYEKNGQKIVIAANVGKE 604 (637)
T ss_dssp CCTTTSCCCCCTTSCCHHHHHHHHHHHHHHHHTHHHHHHSEEEEC-CCSSEEEEEEEETTEEEEEEEECSSS
T ss_pred ccccccccccchhhcChHHHHHHHHHHHHHhhChhhhhCCcEEEe-cCCCEEEEEEEcCCceEEEEEeCCCC
Confidence 1 146899999999999999999 88988854 4568999988 4578888888653
|
| >2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=463.65 Aligned_cols=354 Identities=15% Similarity=0.213 Sum_probs=250.3
Q ss_pred ceeEEEeeecCCCC--------CccHHHHHhh-----------hhhHHHcCCCEEEcCCCCCCCC---------CCCCCc
Q 015125 25 REILFQGFNWESCK--------HDWWRNLERK-----------VPDISKSGFTSVWLPPATHSFA---------PEGYLP 76 (413)
Q Consensus 25 ~~~i~~~f~~~~~~--------~g~~~gi~~~-----------L~yLk~lGv~~I~L~Pi~~~~~---------~~gY~~ 76 (413)
..||||++.++|+. .|+|.|++++ |+|||+||||+||||||+++++ +|||+|
T Consensus 432 ~~vIYEihv~~F~~~~~~g~~~~Gt~~g~~e~~~~~l~Gi~~~LdyLk~LGvtaI~L~Pi~e~~~~de~~~~~~~wGYd~ 511 (921)
T 2wan_A 432 DEVIYEAHVRDFSIDANSGMKNKGKYLAFTEHGTKGPDHVKTGIDSLKELGITTVQLQPVEEFNSIDETQPDTYNWGYDP 511 (921)
T ss_dssp GCCEEEECHHHHHCSTTSCCSSTTSGGGGGCCSCBCGGGCBCHHHHHHHHTCCEEEESCCEEESSSCTTSTTSCCCCCSE
T ss_pred hcEEEEEEcCcccCCCCCCCCCCCCeeheeccccccccccchhhHHHHHcCCCEEEeCCccccCcccccccCcCCcCCCC
Confidence 47999999998763 3788888775 9999999999999999999864 699999
Q ss_pred ccCC------CCCCCCCC--HHHHHHHHHHHHHcCCEEEEEEccccCcCCC-CCCCCcccccCCCCCCCCCCCeeccCCC
Q 015125 77 QNLY------SLNSSYGS--EHLLKALLHKMKQHKVRAMADIVINHRVGTT-QGHGGKYNRYDGIPLSWDEHAVTSCTGG 147 (413)
Q Consensus 77 ~d~~------~id~~~Gt--~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 147 (413)
.||+ .++| +|+ .+|||+||++||++||+||||+|+||++.++ +++.+. . +..|... +.
T Consensus 512 ~dy~ap~~~y~~dp-~Gt~~~~dfk~LV~~aH~~GI~VILDvV~NHt~~~~~~~f~~~----~--p~y~~~~------~~ 578 (921)
T 2wan_A 512 RNYNVPEGAYATTP-EGTARITELKQLIQSLHQQRIGVNMDVVYNHTFDVMVSDFDKI----V--PQYYYRT------DS 578 (921)
T ss_dssp EEEEEECGGGSSCS-STTHHHHHHHHHHHHHHHTTCEEEEEECTTCCSCSSSSHHHHH----S--TTTTBCB------CT
T ss_pred cCCCCCCcccccCC-CCCccHHHHHHHHHHHHHcCCEEEEEEccccccccccccccCC----C--CCeEEEc------CC
Confidence 9996 5556 666 7999999999999999999999999999987 332211 0 0011110 00
Q ss_pred CCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC---C-CeEEEcccCCC
Q 015125 148 LGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYWDSC 223 (413)
Q Consensus 148 ~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~---~-~~~vgE~~~~~ 223 (413)
.+.. ...+...++||++||+||++|++++++|++++||||||||++++++.++|+++.+.++ | .++|||.|...
T Consensus 579 ~g~~--~~~~g~~~dln~~~p~Vr~~i~d~l~~Wl~e~gVDGfR~Da~~~~~~~~~~~~~~~l~~~~p~~~ligE~w~~~ 656 (921)
T 2wan_A 579 NGNY--TNGSGCGNEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFDLMALLGKDTMAKISNELHAINPGIVLYGEPWTGG 656 (921)
T ss_dssp TSCB--CCTTSSSCCBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGGCHHHHHHHHHHHHHHCTTCEEEECSSCSS
T ss_pred CCcc--cCCCCcccccccCCHHHHHHHHHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHHHHHhCCceEEEEecccCC
Confidence 0100 0012335799999999999999999999988999999999999999999999877654 4 78999999741
Q ss_pred C--CCCCCCCCccchhhHhHhhhh-ccCCCc-ccccCccchHHHHHH---------hccc---hhhhhhhcCCCCCcccc
Q 015125 224 N--YNSHGLDYNQDSHRQRIINWI-DGTGQL-SAAFDFTTKGILQEA---------VKGQ---FWRLRDAQGKPPGVMGW 287 (413)
Q Consensus 224 ~--~~~~~~~~~~~~~~~~l~~~~-~~~~~~-~~~~df~~~~~l~~~---------~~g~---~~~~~~~~~~~~~~~~~ 287 (413)
+ +... ..+. ...+++ .+.|++.++..++.. ..|. ...+...+......+..
T Consensus 657 ~~~~~~~-------------~~~~~~~~~gf~~~~~nd~~rd~~~~~~f~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~ 723 (921)
T 2wan_A 657 TSGLSSD-------------QLVTKGQQKGLGIGVFNDNIRNGLDGNVFDKTAQGFATGDPNQVDVIKNGVIGSIQDFTS 723 (921)
T ss_dssp CCSSCTT-------------TSCCTTTTTTTTCEEECHHHHHHHHCCTTCTTCCCTTTTCSSCHHHHHHHHBTTTTTTCS
T ss_pred Ccccccc-------------hhccccccCCCCeEEechHHHHHHhcccccccchhhhcCChhHHHHHHHHHhcchhhccc
Confidence 1 1000 0000 001122 355666655555431 1111 11222222111111222
Q ss_pred cCCcceecccCCCCCcCCCCCC----C-C----hhHHHHHHHHHhcCCCeeEEecCcccC--------------------
Q 015125 288 WPSRAVTFLDNHDTGSTQAHWP----F-P----SNHIMEGYAYILMHPGIPSVFYDHFYD-------------------- 338 (413)
Q Consensus 288 ~p~~~v~flenHD~~R~~~~~~----~-~----~~~~~la~a~ll~~pGiP~Iy~G~E~g-------------------- 338 (413)
.|...++|++|||+.|+.+.+. . . ..++++|++++|++||+||||||+|+|
T Consensus 724 ~p~~~vnfv~nHD~~rl~d~l~~~~~~~~~~~~~~~~rla~a~llt~pG~P~iy~GdE~g~~~~g~~n~y~~~d~~~~~~ 803 (921)
T 2wan_A 724 APSETINYVTSHDNMTLWDKILASNPSDTEADRIKMDELAHAVVFTSQGVPFMQGGEEMLRTKGGNDNSYNAGDSVNQFD 803 (921)
T ss_dssp SGGGEEECSCCSSSCCHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSBSEEEEETTGGGTCCCTTCSCCTTCCHHHHSCC
T ss_pred CcceeEEeeeccCCccHHHHhhhhCCCCCHHHHHHHHHHHHHHHHHCCCCcEEEcchhhcccCCCCCcccCCcccccccC
Confidence 3567899999999998765321 1 1 247899999999999999999999975
Q ss_pred Cc-----hhHHHHHHHHHHHHHhCcccCCCCe-------EEEEecCCEEEEEEC--------CEEEEEEcCCCCC----C
Q 015125 339 WG-----DSIHNQIVKLMDVRRQQDIHSRSSI-------KILEAQSNLYSAIIG--------DKVCMKIGDGSWC----P 394 (413)
Q Consensus 339 w~-----~~l~~~i~~L~~lR~~~p~l~~G~~-------~~~~~~~~~~~~~r~--------~~~lv~lnn~~~~----~ 394 (413)
|. .++++++|+|++||+++|+|+.|++ +++..++++++|.|. +.++|++|.+... .
T Consensus 804 W~~~~~~~~l~~~~~~Li~lRk~~paL~~g~~~~i~~~~~~~~~~~~vlaf~r~~~~~~~~~~~~lVv~N~~~~~~~~~L 883 (921)
T 2wan_A 804 WSRKAQFKDVFDYFSSMIHLRNQHPAFRMTTADQIKQNLTFLESPTNTVAFELKNYANHDTWKNIIVMYNPNKTSQTLNL 883 (921)
T ss_dssp THHHHHTHHHHHHHHHHHHHHHHCGGGGCCSHHHHHHHEEECCCCTTCEEEEECSSGGGCSSSCEEEEEECSSSCEEEEC
T ss_pred CcccccchHHHHHHHHHHHHHhhChhhhCCchhhhccceEEecCCCcEEEEEEecCCCCCCCCeEEEEEECCCCCEEEEC
Confidence 32 3689999999999999999999875 345556789999983 2688999986532 1
Q ss_pred CCCCcEEeeeCC
Q 015125 395 AGKEWTLATSGH 406 (413)
Q Consensus 395 ~~~~~~~~~s~~ 406 (413)
+.+.|++++++.
T Consensus 884 p~g~w~~~~~~~ 895 (921)
T 2wan_A 884 PSGDWTIVGLGD 895 (921)
T ss_dssp CSSCEEEEEETT
T ss_pred CCCcEEEEEcCC
Confidence 235788887765
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-53 Score=447.95 Aligned_cols=349 Identities=13% Similarity=0.121 Sum_probs=250.0
Q ss_pred CceeEEEeeecCCCCC---ccHHHHHh-hhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 015125 24 GREILFQGFNWESCKH---DWWRNLER-KVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLH 97 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~---g~~~gi~~-~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~ 97 (413)
...+||+++.+.+..+ |+|+++++ +|+|||+||||+||||||++++ ++|||+|.|||+|+|+|||++||++||+
T Consensus 179 ~~~~IYE~hv~~~~~~~~~Gt~~~l~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~dy~a~~~~~Gt~~df~~lv~ 258 (755)
T 3aml_A 179 DAPRIYEAHVGMSGEEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRSGTPEDLKYLVD 258 (755)
T ss_dssp SSCEEEEEESTTCSSSSSCCCHHHHHHHTHHHHHHTTCCEEEEESCEECSCGGGTTCSCSEEEEECGGGCCHHHHHHHHH
T ss_pred CCCEEEEEeeeccccCCCCCCHHHHHHHHHHHHHHcCCCEEEECchhcCCCCCCCCCccCCCCccCCCCCCHHHHHHHHH
Confidence 3478999999987655 79999987 7999999999999999999987 6899999999999999999999999999
Q ss_pred HHHHcCCEEEEEEccccCcCCCCCCCCcccccC---CC-CCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHH
Q 015125 98 KMKQHKVRAMADIVINHRVGTTQGHGGKYNRYD---GI-PLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKD 173 (413)
Q Consensus 98 ~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~ 173 (413)
+||++||+||||+|+||++.++++.- ..|. +. ...++... .+. ....+.++||+++|+||++
T Consensus 259 ~~H~~Gi~VilD~V~NH~~~~~~~g~---~~fd~~~~~~~~yf~~~~-----~g~------~~~w~~~~lN~~~p~V~~~ 324 (755)
T 3aml_A 259 KAHSLGLRVLMDVVHSHASNNVTDGL---NGYDVGQNTHESYFHTGD-----RGY------HKLWDSRLFNYANWEVLRF 324 (755)
T ss_dssp HHHHTTCEEEEEECCSCBCCCTTTSG---GGGCSSCCGGGSSBCCGG-----GGE------ETTTTEECBCTTSHHHHHH
T ss_pred HHHHCCCEEEEEEeccccccccccch---hccccCCCCCcceeecCC-----CCc------cCCCCCceeccCCHHHHHH
Confidence 99999999999999999999875321 1111 00 01111100 000 0112357899999999999
Q ss_pred HHHHHHHHHhhcCCCeEeecccCCC--------------------------cHHHHHHHHHhh---CC-CeEEEcccCCC
Q 015125 174 IIAWLRWLRNTVGFQDFRFDFARGY--------------------------SAKYVKEYIEGA---RP-IFSVGEYWDSC 223 (413)
Q Consensus 174 l~~~~~~w~~~~gvDGfR~D~a~~i--------------------------~~~~~~~~~~~~---~~-~~~vgE~~~~~ 223 (413)
|++++++|++++||||||+|++++| ..+||+++.+.+ .| .++|||.|.+.
T Consensus 325 l~~~l~~Wl~e~gvDGfR~Dav~~m~~~~~g~~~~f~~~~~~~~~~~~~~~ai~fl~~~~~~v~~~~p~~~lIaE~~~~~ 404 (755)
T 3aml_A 325 LLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEYFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGM 404 (755)
T ss_dssp HHHHHHHHHHHHCCCEEEETTHHHHHBTTTTTTCCCCSCGGGTSSTTBCHHHHHHHHHHHHHHHHHCTTCEEEECCSSCC
T ss_pred HHHHHHHHHHHcCCCEEEecchhhhhhcccCcccccccccccccccccchhHHHHHHHHHHHHHHHCCCeEEEEEccCCC
Confidence 9999999998899999999998643 125677766544 34 78899998653
Q ss_pred CCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc------hhhhhhhcCCCCCcccccCCcceeccc
Q 015125 224 NYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ------FWRLRDAQGKPPGVMGWWPSRAVTFLD 297 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~------~~~~~~~~~~~~~~~~~~p~~~v~fle 297 (413)
+ ..+..+...+-+++..+++.+...+.+.+++. ...+...+.. ...+.+.++|++
T Consensus 405 p--------------~~~~~~~~gglgFd~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~-----~~~~~~~vnf~~ 465 (755)
T 3aml_A 405 P--------------VLCRPVDEGGVGFDFRLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTN-----RRYTEKCIAYAE 465 (755)
T ss_dssp T--------------TTTSCGGGTSCCCSEEECTTHHHHHHHHHHHCCGGGCCHHHHHHHHHC-----SCTTSCEEECSC
T ss_pred c--------------cceeeccCCCccccccccccchHHHHHHHhhCCccccCHHHHHHHHHh-----ccCchhheehhh
Confidence 2 11112222111222222222333444444321 1223222211 023557899999
Q ss_pred CCCCCcCCCCC-----------------CC-------ChhHHHHHHHHHhcCCCeeEE-ecCcccCCc------------
Q 015125 298 NHDTGSTQAHW-----------------PF-------PSNHIMEGYAYILMHPGIPSV-FYDHFYDWG------------ 340 (413)
Q Consensus 298 nHD~~R~~~~~-----------------~~-------~~~~~~la~a~ll~~pGiP~I-y~G~E~gw~------------ 340 (413)
|||+.|..... .. ...+.|+|.++++++||+|+| |||+|+|..
T Consensus 466 nHD~~r~g~~~~~f~l~d~~~~~~~~~l~~~~~~~~~~~~~~k~a~~~llt~pG~P~lly~G~E~G~~~~~~~p~~g~~~ 545 (755)
T 3aml_A 466 SHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTINRGIALQKMIHFITMALGGDGYLNFMGNEFGHPEWIDFPREGNNW 545 (755)
T ss_dssp CCCTTSCCCBCHHHHHHTTHHHHSCBSSSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETTGGGTCCSBCCCCCGGGTT
T ss_pred cCCccccccccccccccchhhhhhhhhccccchhhhhhHHHHHHHHHHHHHCCCCEEEEeCchhcCCcCcccCcccCCCC
Confidence 99999874321 10 124688999999999999977 999998631
Q ss_pred -------------------hhHHHHHHHHHHHHHhCcccCCCCeEEE--EecCCEEEEEECCEEEEEEcCCCCC------
Q 015125 341 -------------------DSIHNQIVKLMDVRRQQDIHSRSSIKIL--EAQSNLYSAIIGDKVCMKIGDGSWC------ 393 (413)
Q Consensus 341 -------------------~~l~~~i~~L~~lR~~~p~l~~G~~~~~--~~~~~~~~~~r~~~~lv~lnn~~~~------ 393 (413)
+.+..++++|++||+++|+|..|...+. ..++++++|.|. .++|++|++...
T Consensus 546 ~~~~~r~~W~~~~~~~~~~~~l~~~~r~Li~lRk~~paL~~G~~~~~~~~~~~~vlaf~R~-~llVv~N~s~~~~~~~~~ 624 (755)
T 3aml_A 546 SYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFERG-DLVFVFNFHPNKTYKGYK 624 (755)
T ss_dssp CCTTSSCCHHHHHCTTBSHHHHHHHHHHHHHHHHHHCGGGCCCEEEEEEETTTTEEEEEET-TEEEEEECCSSCCEEEEE
T ss_pred CcccccCCcccccCccchhHHHHHHHHHHHHHHHhChhhcCCCEEEEeecCCCcEEEEEEC-CEEEEEECCCCCccceeE
Confidence 2488999999999999999999865433 335789999997 688899997541
Q ss_pred ---CCCCCcEEeeeCC
Q 015125 394 ---PAGKEWTLATSGH 406 (413)
Q Consensus 394 ---~~~~~~~~~~s~~ 406 (413)
|..+.|+++|++.
T Consensus 625 i~vp~~g~~~~vlnsd 640 (755)
T 3aml_A 625 VGCDLPGKYRVALDSD 640 (755)
T ss_dssp EEESSCSEEEEEEETT
T ss_pred ECCCCCCeEEEEEeCC
Confidence 4457899988754
|
| >2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-52 Score=441.44 Aligned_cols=318 Identities=15% Similarity=0.216 Sum_probs=224.3
Q ss_pred CceeEEEeeecCCCC---------CccHHHHHhh--hhhHHHcCCCEEEcCCCCCCCC-----------CCCCCcccCCC
Q 015125 24 GREILFQGFNWESCK---------HDWWRNLERK--VPDISKSGFTSVWLPPATHSFA-----------PEGYLPQNLYS 81 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~---------~g~~~gi~~~--L~yLk~lGv~~I~L~Pi~~~~~-----------~~gY~~~d~~~ 81 (413)
...+|||++.++|+. .|+|+||+++ |+|||+||||+||||||+++.. +|||+|.||++
T Consensus 172 ~~~vIYeihv~~f~~~~~~~~~~~~Gt~~gi~~~~~l~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~~wGY~~~~y~~ 251 (718)
T 2vr5_A 172 KDTVIYEVHVKGFTKLRLDLPENIRGTYEGLASEQMISYLKDLGITTVELMPVFHFIDQRFLTDKGLTNYWGYDPINFFS 251 (718)
T ss_dssp TSCCEEEECTTTTTTTCTTSCTTSTTSHHHHTSHHHHHHHHHHTCCEEEECCCBCBCCCHHHHTTTCCCSSCCCBSCSSS
T ss_pred hHCEEEEEEcchhhcCCCCCCcccCcCHHHHhcchhhHHHHHcCCCeEEEeCCEecCccccccccCCcCccCcCcccCcc
Confidence 347999999999876 4899999999 9999999999999999999763 58999999999
Q ss_pred CCCCCCC-------HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCC-cccccCCCCCCCCCCCeeccCCCCCCCcC
Q 015125 82 LNSSYGS-------EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGG-KYNRYDGIPLSWDEHAVTSCTGGLGNGST 153 (413)
Q Consensus 82 id~~~Gt-------~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (413)
|+|+||| .+|||+||++||++||+||||+|+||++.++++... .+..+.. ..|.... .++.. ..
T Consensus 252 ~~~~yGt~~~~~~~~~dfk~lv~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~--~~yy~~~----~~~~~--~~ 323 (718)
T 2vr5_A 252 PECRYSSTGCLGGQVLSFKKMVNELHNAGIEVIIDVVYNHTAEGNHLGPTLSFRGIDN--TAYYMLQ----PDNKR--YY 323 (718)
T ss_dssp BCGGGCSSCTTTHHHHHHHHHHHHHHTTTCEEEEEECCSCCSSCSTTSCCSSHHHHHS--TTTBCBC----TTTSS--SB
T ss_pred cChhhcCCCCCCchHHHHHHHHHHHHHCCCEEEEEeccCcccCccccCccccccCCCC--CcceEeC----CCCCc--ee
Confidence 9999999 799999999999999999999999999998764210 1111111 1111000 00000 00
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHH---------HHHHHHHh-hC-CCeEEEcccCC
Q 015125 154 GDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAK---------YVKEYIEG-AR-PIFSVGEYWDS 222 (413)
Q Consensus 154 ~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~---------~~~~~~~~-~~-~~~~vgE~~~~ 222 (413)
......+++||+++|+||++|++++++|++++||||||||+|++++.+ +++++.+. +. +.++|||.|..
T Consensus 324 ~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gvDGfR~D~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~liaE~w~~ 403 (718)
T 2vr5_A 324 LDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHVDGFRFDLAAALARELYSVNMLNTFFIALQQDPILSQVKLIAEPWDV 403 (718)
T ss_dssp CCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTTCCCEEEETTGGGGGBSSSSBCTTCHHHHHHHHCTTGGGSEEEECCBCS
T ss_pred ecCCCccCeecCCCHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhhhccCCccchHHHHHHHHhCcccCCcEEEeccccc
Confidence 112244689999999999999999999998899999999999988653 55665543 22 37789999974
Q ss_pred CCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc---hhhhhhhcCCCCCcc---cccCCcceecc
Q 015125 223 CNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVM---GWWPSRAVTFL 296 (413)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~---~~~~~~~~~~~~~~~---~~~p~~~v~fl 296 (413)
.+. .|.. ..| ....+.++..++..++..+.|+ ...+...+......+ +..|...++|+
T Consensus 404 ~~~-----~~~~-------~~f----~~~~~~wn~~~r~~~~~f~~g~~~~~~~~~~~l~~~~~~y~~~~~~p~~~vnf~ 467 (718)
T 2vr5_A 404 GQG-----GYQV-------GNF----PYQWAEWNGKYRDSIRRFWRGEALPYSEIANRLLGSPDIYLGNNKTPFASINYV 467 (718)
T ss_dssp STT-----CBCT-------TCS----CTTEEEECHHHHHHHHHHHHTCCEEHHHHHHHHTTCHHHHGGGTCCGGGEEECS
T ss_pred CCC-----cccc-------cCC----chhHHHHhHHHHHHHHHHHcCCcchHHHHHHHHhcchhhhcccCCCcceeeeee
Confidence 210 0100 000 0011345555666666665443 222222221110011 11345689999
Q ss_pred cCCCCCcCCCCC-----------------------------CC--C-------hhHHHHHHHHHhcCCCeeEEecCcccC
Q 015125 297 DNHDTGSTQAHW-----------------------------PF--P-------SNHIMEGYAYILMHPGIPSVFYDHFYD 338 (413)
Q Consensus 297 enHD~~R~~~~~-----------------------------~~--~-------~~~~~la~a~ll~~pGiP~Iy~G~E~g 338 (413)
+|||+.|+.... +. . ..+++++++++|++||+||||||+|+|
T Consensus 468 ~~HD~~~l~dl~~~~~k~~~~~g~~~~dg~~~n~sw~~~~~g~~~~~~~~~~~~~~~r~a~a~ll~~~G~P~iy~GdE~G 547 (718)
T 2vr5_A 468 TSHDGFTLEDLVSYNQKHNEANGFNNQDGMNENYSWNCGAEGPTNDQNVVICREKQKRNFMITLLVSQGTPMILGGDELS 547 (718)
T ss_dssp CCSSSCCHHHHSSCSSCCCGGGSSTTCCSCSCCCCCCSSSSSSCCCHHHHHHHHHHHHHHHHHHTTSSSEEEEETTTTTT
T ss_pred ecCCCCCHHHHHHHhhhhhhhcccccccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCcEEEechhhc
Confidence 999997632110 00 0 246889999999999999999999975
Q ss_pred --------------------Cc-----hhHHHHHHHHHHHHHhCcccCCCCe
Q 015125 339 --------------------WG-----DSIHNQIVKLMDVRRQQDIHSRSSI 365 (413)
Q Consensus 339 --------------------w~-----~~l~~~i~~L~~lR~~~p~l~~G~~ 365 (413)
|+ .++++++|+||+||+++|+|+.|.+
T Consensus 548 ~~~~G~~~~y~~~~~~~~~~W~~~~~~~~l~~~~~~Li~lRk~~pal~~~~~ 599 (718)
T 2vr5_A 548 RTQRGNNNAFCQDNEITWFDWNLDERKSKFLEFVKKMIQFYRAHPAFRRERY 599 (718)
T ss_dssp CCCTTCSCCTTCCSTTTSCCCCCCHHHHHHHHHHHHHHHHHHHCGGGSCSSC
T ss_pred ccCCCCCCcccCCccccccCccccccchHHHHHHHHHHHHHhhCcccccCcc
Confidence 32 3699999999999999999998765
|
| >2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-52 Score=421.95 Aligned_cols=296 Identities=15% Similarity=0.190 Sum_probs=226.9
Q ss_pred ccccccCCceeEEEee-ecCCCCC--ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHH
Q 015125 17 LGAVIRNGREILFQGF-NWESCKH--DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLK 93 (413)
Q Consensus 17 ~~~~~~~~~~~i~~~f-~~~~~~~--g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~ 93 (413)
+++.+-.+ .||||++ .++|.++ |||+||+++|||||+||||+|||+||+++++ .+|++.||++|+|+|||.+||+
T Consensus 8 ~~~~ww~~-~viYqi~~~~sf~gdg~Gdl~gi~~~Ldyl~~LGv~~i~l~Pi~~~~~-~~y~~~dy~~idp~~Gt~~d~~ 85 (424)
T 2dh2_A 8 PAQKWWHT-GALYRIGDLQAFQGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQK-DDVAQTDLLQIDPNFGSKEDFD 85 (424)
T ss_dssp CCCCGGGS-SCEEEECCHHHHHCTTCCSHHHHHTTHHHHHHTTCSEEEECCCEEECT-TCSTTEEEEEECGGGCCHHHHH
T ss_pred Cccccccc-CeEEEEcCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCC-CCCCcccccccCccCCCHHHHH
Confidence 34443233 6999998 8888754 7999999999999999999999999999975 4699999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHH
Q 015125 94 ALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKD 173 (413)
Q Consensus 94 ~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~ 173 (413)
+||++||++||+||||+|+||++ +|+|+ . .++|+||++
T Consensus 86 ~lv~~ah~~Gi~vilD~V~NH~s-~~~wF-------~----------------------------------~q~~~Vr~~ 123 (424)
T 2dh2_A 86 SLLQSAKKKSIRVILDLTPNYRG-ENSWF-------S----------------------------------TQVDTVATK 123 (424)
T ss_dssp HHHHHHHHTTCEEEEECCTTTTS-SSTTC-------S----------------------------------SCHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEECCCcCC-Ccccc-------c----------------------------------ccCHHHHHH
Confidence 99999999999999999999999 55432 0 124799999
Q ss_pred HHHHHHHHHhhcCCCeEeecccCCCcH--HHHHHHHHh---hCC--CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhc
Q 015125 174 IIAWLRWLRNTVGFQDFRFDFARGYSA--KYVKEYIEG---ARP--IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWID 246 (413)
Q Consensus 174 l~~~~~~w~~~~gvDGfR~D~a~~i~~--~~~~~~~~~---~~~--~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (413)
+++++++|+ ++||||||+|++++++. +||+++.+. ..+ .++++|.|.. ...+..|.+
T Consensus 124 ~~~~~~~Wl-~~gvDGfRlD~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~~~---------------~~~~~~~~~ 187 (424)
T 2dh2_A 124 VKDALEFWL-QAGVDGFQVRDIENLKDASSFLAEWQNITKGFSEDRLLIAGTNSSD---------------LQQILSLLE 187 (424)
T ss_dssp HHHHHHHHH-HHTCCEEEECCGGGSTTHHHHHHHHHHHHHHHCTTCEEEEECSCCC---------------HHHHHHHTT
T ss_pred HHHHHHHHH-HcCCCEEEEeccccCCccHHHHHHHHHHHHHhCCCcEEEEEEecCC---------------HHHHHHHhc
Confidence 999999999 59999999999999875 488877654 444 3467887753 245556655
Q ss_pred cCCCcccccCccchH-------HHHHHhccchhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCChhHHHHHH
Q 015125 247 GTGQLSAAFDFTTKG-------ILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGY 319 (413)
Q Consensus 247 ~~~~~~~~~df~~~~-------~l~~~~~g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~ 319 (413)
.+ ...+|+|.+.. .+...+. +...... ......|+ |++|+.+.+. +..+.++++
T Consensus 188 ~~--~~~~~~f~~~~~~~~~~~~~~~~~~----~~~~~~~---------~~~~~~~~---d~~r~~s~~~-~~~~~k~~~ 248 (424)
T 2dh2_A 188 SN--KDLLLTSSYLSDSGSTGEHTKSLVT----QYLNATG---------NRWCSWSL---SQARLLTSFL-PAQLLRLYQ 248 (424)
T ss_dssp TC--TTCEEECSTTTTCSSCHHHHHHHHH----HHHHHHT---------TCCCEECS---CSSCCGGGTS-CHHHHHHHH
T ss_pred cc--cccccchhhhcCCCCCHHHHHHHHH----HHHHhhc---------cCceeeee---cCcchhhhcC-CHHHHHHHH
Confidence 32 33566654321 1111111 1111111 01112344 6778777665 456799999
Q ss_pred HHHhcCCCeeEEecCcccC-----------------Cc------------------------hhHHHHHHHHHHHHHhCc
Q 015125 320 AYILMHPGIPSVFYDHFYD-----------------WG------------------------DSIHNQIVKLMDVRRQQD 358 (413)
Q Consensus 320 a~ll~~pGiP~Iy~G~E~g-----------------w~------------------------~~l~~~i~~L~~lR~~~p 358 (413)
++++|+||+|+||||+|+| |+ .++++++|+|+++|+++|
T Consensus 249 ~lllt~pG~P~iY~GeE~G~~~~~~~~~~~~r~~m~W~~~~~~~~w~~~~~~~nv~~q~~~~~s~~~~yr~Li~lRk~~~ 328 (424)
T 2dh2_A 249 LMLFTLPGTPVFSYGDEIGLDAAALPGQPMEAPVMLWDESSFPDIPGAVSANMTVKGQSEDPGSLLSLFRRLSDQRSKER 328 (424)
T ss_dssp HHHTTSSSEEEEETTGGGTCCGGGSSSCCSSSCCCCSSTTSCTTSTTCCCGGGSHHHHHTCTTSHHHHHHHHHHHHHHCH
T ss_pred HHHHHCCCCeEEEeceecCCcCCCCCCCcccCCCCCCCccCCCCCCcccccccCHHhhhcCcHHHHHHHHHHHHHHhcCh
Confidence 9999999999999999975 32 258999999999999999
Q ss_pred ccCCCCeEEEEecCCEEEEEE----CCEEEEEEcCCC
Q 015125 359 IHSRSSIKILEAQSNLYSAII----GDKVCMKIGDGS 391 (413)
Q Consensus 359 ~l~~G~~~~~~~~~~~~~~~r----~~~~lv~lnn~~ 391 (413)
+|+.|+++.+..++++++|.| +++++|++|.++
T Consensus 329 ~l~~G~~~~~~~~~~v~a~~R~~~~~~~~lvv~N~s~ 365 (424)
T 2dh2_A 329 SLLHGDFHAFSAGPGLFSYIRHWDQNERFLVVLNFGD 365 (424)
T ss_dssp HHHHCEEEEEBCCTTEEEEEEECTTSCEEEEEEECSS
T ss_pred hhhcCceEEEecCCCEEEEEEEcCCCCEEEEEEECCC
Confidence 999999999887889999998 247888999865
|
| >2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-53 Score=447.59 Aligned_cols=357 Identities=16% Similarity=0.223 Sum_probs=246.7
Q ss_pred CceeEEEeeecCCCC---------CccHHHHHhh--hhhHHHcCCCEEEcCCCCCCCC-----------CCCCCcccCCC
Q 015125 24 GREILFQGFNWESCK---------HDWWRNLERK--VPDISKSGFTSVWLPPATHSFA-----------PEGYLPQNLYS 81 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~---------~g~~~gi~~~--L~yLk~lGv~~I~L~Pi~~~~~-----------~~gY~~~d~~~ 81 (413)
...||||++.++|+. .|+|+||+++ |+|||+||||+||||||++++. +|||+|.|||+
T Consensus 149 ~~~vIYei~v~~F~~~~~~~~~~~~G~~~gi~~~~~l~yL~~LGvt~i~L~Pi~~~~~~~~~~~~g~~~~wGY~~~~y~~ 228 (657)
T 2wsk_A 149 GSTIIYEAHVKGLTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAMFA 228 (657)
T ss_dssp GGCCEEEECHHHHHTTCTTSCGGGTTSHHHHTSHHHHHHHHHHTCCEEEESCCEEECCCHHHHTTTCCCSSCCCEEEEEE
T ss_pred hhcEEEEEEcceeeccCCCCCccCCcCHHHHhcccchHHHHHcCCCEEEECCccccCccccccccccccccCcCcccCCC
Confidence 347999999997765 4899999999 9999999999999999999864 68999999999
Q ss_pred CCCCCC-----CHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCC-cccccCCCCCCCCCCCeeccCCCCCCCcCCC
Q 015125 82 LNSSYG-----SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGG-KYNRYDGIPLSWDEHAVTSCTGGLGNGSTGD 155 (413)
Q Consensus 82 id~~~G-----t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
|+|+|| +.+|||+||++||++||+||||+|+||++.++++... .+..+......+... .+.+ ..
T Consensus 229 ~~~~~G~~p~~~~~d~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~y~~~~-----~~~~-----~~ 298 (657)
T 2wsk_A 229 LHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNRSYYWIRE-----DGDY-----HN 298 (657)
T ss_dssp ECGGGCSSGGGHHHHHHHHHHHHHHTTCEEEEEECCSCCTTCSTTSBCCSHHHHHHHHHBCBCT-----TSSB-----CC
T ss_pred CCHHHcCCCCcCHHHHHHHHHHHHHCCCEEEEEEeecccccccccCccccccCCCCccceEECC-----CCCe-----eC
Confidence 999999 4799999999999999999999999999998875311 010000000000000 0001 11
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcH--------HHHHHHHHh-hC-CCeEEEcccCCCCC
Q 015125 156 NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA--------KYVKEYIEG-AR-PIFSVGEYWDSCNY 225 (413)
Q Consensus 156 ~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~--------~~~~~~~~~-~~-~~~~vgE~~~~~~~ 225 (413)
.+..+++||+++|+||++|++++++|++++||||||+|+|++++. .+++++.+. +. +.+++||.|...+.
T Consensus 299 ~~~~~~~ln~~~p~v~~~i~d~~~~W~~e~gvDGfR~D~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~liaE~w~~~~~ 378 (657)
T 2wsk_A 299 WTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRTPEFRQDAPLFTAIQNCPVLSQVKLIAEPWDIAPG 378 (657)
T ss_dssp SSSSSCCBCTTSHHHHHHHHHHHHHHHHTTCCCEEEETTTHHHHBSSSBCTTCHHHHHHHHCTTGGGSEEEECCBCSSTT
T ss_pred CCCcCCcccCCCHHHHHHHHHHHHHHHHHhCCcEEEEecccccccccccchhHHHHHHHHhCcccCCcEEEEccccCCCC
Confidence 134468999999999999999999999889999999999987643 366666543 22 37889999975210
Q ss_pred CCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc---hhhhhhhcCCCCCcc---cccCCcceecccCC
Q 015125 226 NSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVM---GWWPSRAVTFLDNH 299 (413)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~---~~~~~~~~~~~~~~~---~~~p~~~v~flenH 299 (413)
.|. +.......+.|+..++..++..+.|+ ...+...+......+ +..+...++|++||
T Consensus 379 -----~~~-----------~~~f~~~~~~~n~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~nf~~~H 442 (657)
T 2wsk_A 379 -----GYQ-----------VGNFPPLFAEWNDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAH 442 (657)
T ss_dssp -----CBC-----------TTCSCTTEEEEEHHHHHHHHHHHHTSCSCHHHHHHHHBTTHHHHSSTTCCGGGEEECSCCS
T ss_pred -----ccc-----------ccCCCccHHHHhHHHHHHHHHHhccCCchHHHHHHHHhcchhhhccCCCCccceeehhhcC
Confidence 010 00000011234444555555554332 122222111100001 12345689999999
Q ss_pred CCCcCCCC-----------------------------CCC---------ChhHHHHHHHHHhcCCCeeEEecCcccC---
Q 015125 300 DTGSTQAH-----------------------------WPF---------PSNHIMEGYAYILMHPGIPSVFYDHFYD--- 338 (413)
Q Consensus 300 D~~R~~~~-----------------------------~~~---------~~~~~~la~a~ll~~pGiP~Iy~G~E~g--- 338 (413)
|+.|+... .+. ...+++++++++|++||+||||||||+|
T Consensus 443 D~~~l~dl~~~~~~~~~~~g~~~~~g~~~~~s~n~~~~g~~~~~~~~~~~~~~~r~~~a~ll~~~G~P~iy~GdE~G~~~ 522 (657)
T 2wsk_A 443 DGFTLRDCVCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQGTPMLLAGDEHGHSQ 522 (657)
T ss_dssp SSCCHHHHTTCSSCCCGGGSSTTCSSCSCCCCCCTTSSSSCCCHHHHHHHHHHHHHHHHHHHHSBSEEEEETTTTTTCCC
T ss_pred CCCcHHHHHHHHhhhhhhccccccCCcccccccccccccCCCchhHHHHHHHHHHHHHHHHHHcccCCEEEechhhcccc
Confidence 98753110 000 1235899999999999999999999975
Q ss_pred -----------------Cc---hhHHHHHHHHHHHHHhCcccCCCCeE--------EEEec------------CCEEEEE
Q 015125 339 -----------------WG---DSIHNQIVKLMDVRRQQDIHSRSSIK--------ILEAQ------------SNLYSAI 378 (413)
Q Consensus 339 -----------------w~---~~l~~~i~~L~~lR~~~p~l~~G~~~--------~~~~~------------~~~~~~~ 378 (413)
|. .++++++|+||+||+++|+|+.|++. .+..+ .++++|.
T Consensus 523 ~g~~~~y~~d~~~~~~~W~~~~~~l~~~~~~Li~lRk~~pal~~g~~~~~~~~~v~~~~~~g~~~~~~~w~~~~~~la~~ 602 (657)
T 2wsk_A 523 HGNNNAYCQDNQLTWLDWSQASSGLTAFTAALIHLRKRIPALVENRWWEEGDGNVRWLNRYAQPLSTDEWQNGPKQLQIL 602 (657)
T ss_dssp TTCSCCTTCCSTTTSCCGGGCCHHHHHHHHHHHHHHTTCHHHHSCCCCCTTSSSEEEECTTSSBCCHHHHHHSCSEEEEE
T ss_pred CCCCCccccCCccCccCcccccHHHHHHHHHHHHHHhhCcccccCcccccCCCceEEEcCCCcccccccccCCCceEEEE
Confidence 22 36999999999999999999998763 23322 5699999
Q ss_pred ECCEEEEEEcCCCCC----CCCCCcEE--eeeCC
Q 015125 379 IGDKVCMKIGDGSWC----PAGKEWTL--ATSGH 406 (413)
Q Consensus 379 r~~~~lv~lnn~~~~----~~~~~~~~--~~s~~ 406 (413)
|.++++|++|.+... ...+.|+. ++++.
T Consensus 603 r~~~~lv~~N~s~~~~~~~lp~g~~~~~~l~~~~ 636 (657)
T 2wsk_A 603 LSDRFLIAINATLEVTEIVLPAGEWHAIPPFAGE 636 (657)
T ss_dssp ETTTEEEEEECSSSCEEEECCSSCCEECTTSSCT
T ss_pred EcCCEEEEEcCCCCceEEEcCCCceEEEEEecCC
Confidence 988899999986532 12346777 55543
|
| >2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-53 Score=447.92 Aligned_cols=345 Identities=18% Similarity=0.283 Sum_probs=241.8
Q ss_pred CceeEEEeeecCCCCC-----------ccHHHHHhhhhhHHHcCCCEEEcCCCCCC-------------------CC-CC
Q 015125 24 GREILFQGFNWESCKH-----------DWWRNLERKVPDISKSGFTSVWLPPATHS-------------------FA-PE 72 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~-----------g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~-------------------~~-~~ 72 (413)
...|||+++.++|+.+ |+|+||+++|+|||+||||+||||||+++ .. +|
T Consensus 150 ~~~viYE~hv~~f~~~~~~~~~~~~~~Gt~~gi~~~L~yLk~LGvt~I~L~Pi~~~~~~~e~~~~~~~~~~~~~~~~~~w 229 (714)
T 2ya0_A 150 EDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNW 229 (714)
T ss_dssp GGCCEEEECHHHHHCCGGGTTTCSSCTTSHHHHHTTHHHHHHHTCSEEEESCCBCBSSCBGGGTTSCCCSCCSSSCSCCC
T ss_pred cccEEEEEEehhhccCCCCccccccCCcCHHHHHHHhHHHHHcCCCEEEECCcccccccCcccccccccccccCcCcCcc
Confidence 3478999999977653 89999999999999999999999999973 12 39
Q ss_pred CCCcccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeecc
Q 015125 73 GYLPQNLYSLNSSYGS--------EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSC 144 (413)
Q Consensus 73 gY~~~d~~~id~~~Gt--------~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 144 (413)
||+|.|||+++++||+ .+|||+||++||++||+||||+|+||++.+++..+ . .++|... ..
T Consensus 230 GY~~~~~~a~~~~yg~~~~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~-----~---~~~yy~~--~~- 298 (714)
T 2ya0_A 230 GYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDLFED-----L---EPNYYHF--MD- 298 (714)
T ss_dssp SCSBSCSSSBCSTTSSCTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTBCSCHHHHHT-----T---STTTSBC--BC-
T ss_pred CCCCccCcccChhhccCCCCccchHHHHHHHHHHHHHCCCEEEEEeccCcccCcccccc-----c---CCCeeEE--eC-
Confidence 9999999999999999 79999999999999999999999999998653111 1 0111100 00
Q ss_pred CCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhh---CC-CeEEEccc
Q 015125 145 TGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGA---RP-IFSVGEYW 220 (413)
Q Consensus 145 ~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~---~~-~~~vgE~~ 220 (413)
.+ +... ..+ +.+++|+++|+||++|++++++|++++||||||||++++++.++|+++..++ +| +++|||.|
T Consensus 299 ~~--g~~~--~~~-~~~~l~~~~~~v~~~i~d~l~~W~~e~~vDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~ligE~w 373 (714)
T 2ya0_A 299 AD--GTPR--TSF-GGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDHDAASIEEAYKAARALNPNLIMLGEGW 373 (714)
T ss_dssp TT--CCBC--EET-TEEBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHHHCTTCEEEECCC
T ss_pred CC--CCCc--ccc-CCCCcccCCHHHHHHHHHHHHHHHHhhCceEEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 00 0000 011 1367999999999999999999998899999999999999999999887765 35 78999999
Q ss_pred CCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHh---------cc---chhhhhhhcCCCCC-cccc
Q 015125 221 DSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV---------KG---QFWRLRDAQGKPPG-VMGW 287 (413)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~---------~g---~~~~~~~~~~~~~~-~~~~ 287 (413)
.... +...+... .....|....+ ..+.|+..++..++..+ .| ....+...+...+. +...
T Consensus 374 ~~~~---g~~~~~~~---~~~~~~~~~~~-~~~~f~d~~r~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~ 446 (714)
T 2ya0_A 374 RTYA---GDENMPTK---AADQDWMKHTD-TVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPTNFEAD 446 (714)
T ss_dssp SCCC---CSTTCCCC---BSSGGGGGGCS-SSEEECHHHHHHHHCCSSSTTCCCTTTTCCEEHHHHHHHHTTCCTTSCCS
T ss_pred cccc---Cccccccc---ccchhHHhcCC-CccccchHHHHHHhccCCcccchhhhcCCcccHHHHHHHHhcCccccCCC
Confidence 7411 11111000 00112322211 23456655555444321 01 11223322221111 1123
Q ss_pred cCCcceecccCCCCCcCCCCC-----CCC---------hhHHHHHHHHHhcCCCeeEEecCcccCCc-------------
Q 015125 288 WPSRAVTFLDNHDTGSTQAHW-----PFP---------SNHIMEGYAYILMHPGIPSVFYDHFYDWG------------- 340 (413)
Q Consensus 288 ~p~~~v~flenHD~~R~~~~~-----~~~---------~~~~~la~a~ll~~pGiP~Iy~G~E~gw~------------- 340 (413)
.|...|+|++|||+.|+.+.+ ... ..+.++|++++|++||+||||||||+|-.
T Consensus 447 ~p~~~vnfv~nHD~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~la~~lll~~~G~P~i~~GdE~g~~~~~~d~~~~~~~~ 526 (714)
T 2ya0_A 447 SPGDVIQYIAAHDNLTLFDIIAQSIKKDPSKAENYAEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAYRTPVA 526 (714)
T ss_dssp SGGGEEECSCCSSSSCHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHSSSEEEEETTTTTTCCCBCCCGGGSSCCC
T ss_pred CHHHHhhHHHhCCCcchhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHCCCCcEEEechhhcccCCCCCchhhhccc
Confidence 456789999999999864321 111 24789999999999999999999997520
Q ss_pred ----------------------------------------------------hhHHHHHHHHHHHHHhCcccCCCCeEEE
Q 015125 341 ----------------------------------------------------DSIHNQIVKLMDVRRQQDIHSRSSIKIL 368 (413)
Q Consensus 341 ----------------------------------------------------~~l~~~i~~L~~lR~~~p~l~~G~~~~~ 368 (413)
.++++++|+||+||+++|+|+.|++..+
T Consensus 527 ~gr~~e~~~~~~~~~g~~f~~p~~~~d~~~~~~~~~~ldW~~~~~~~~~~~~~~l~~~~~~Li~lRk~~p~l~~g~~~~~ 606 (714)
T 2ya0_A 527 EDKVPNKSHLLRDKDGNPFDYPYFIHDSYDSSDAVNKFDWTKATDGKAYPENVKSRDYMKGLIALRQSTDAFRLKSLQDI 606 (714)
T ss_dssp GGGCCTTEEEEECTTCCEEEEEEEESCCTTCCHHHHCCCHHHHHCTTTCHHHHHHHHHHHHHHHHHHTCGGGGCSSHHHH
T ss_pred cccccchhhhhhhccccccccccccccccCCCCcceeccCCcccccccccchHHHHHHHHHHHHHHhhChhhcCCchhhh
Confidence 2478999999999999999999986432
Q ss_pred -------E--------ecCCEEEEEE----CCEEEEEEcCCC
Q 015125 369 -------E--------AQSNLYSAII----GDKVCMKIGDGS 391 (413)
Q Consensus 369 -------~--------~~~~~~~~~r----~~~~lv~lnn~~ 391 (413)
. .++.+++|.| ++.++|++|.+.
T Consensus 607 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~V~~N~~~ 648 (714)
T 2ya0_A 607 KDRVHLITVPGQNGVEKEDVVIGYQITAPNGDIYAVFVNADE 648 (714)
T ss_dssp HHHEEESSCTTSTTCCSEESEEEEEEECTTSCEEEEEEECSS
T ss_pred cCceEEECCCCCCCCCCCCcEEEEEEeCCCCCEEEEEECCCC
Confidence 1 1235889987 357889999865
|
| >3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-52 Score=443.29 Aligned_cols=340 Identities=18% Similarity=0.257 Sum_probs=240.6
Q ss_pred ceeEEEeeecCCCCC-----------ccHHHHHhhhhhHHHcCCCEEEcCCCCCC------------------CCC-CCC
Q 015125 25 REILFQGFNWESCKH-----------DWWRNLERKVPDISKSGFTSVWLPPATHS------------------FAP-EGY 74 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~-----------g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~------------------~~~-~gY 74 (413)
..+||+++.++|+.+ |+|++++++|+|||+||||+||||||++. ..+ |||
T Consensus 267 ~~vIYElhvr~ft~~~~~~~~~~~~~Gt~~gl~~~L~yLk~LGvtaV~L~Pi~~~~~~~e~~~~~~~~~~~~~~~ynwGY 346 (877)
T 3faw_A 267 DAVIYEAHVRDFTSDQSLDGKLKNQLGTFAAFSEKLDYLQKLGVTHIQLLPVLSYFYVNEMDKSRSTAYTSSDNNYNWGY 346 (877)
T ss_dssp GCEEEEECTTGGGCCGGGTTTCSSCTTSHHHHGGGHHHHHHHTCSEEEESCCBCBSSCBTTCCCCCCSCCSSSCSCCCSC
T ss_pred ccEEEEEEchHhcCCCCCCccccCCCCCHHHHHHHHHHHHHcCCCEEEEcchhcccccccccccccccccCCCCCCccCc
Confidence 479999999988753 99999999999999999999999999973 123 999
Q ss_pred CcccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCC
Q 015125 75 LPQNLYSLNSSYGS--------EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTG 146 (413)
Q Consensus 75 ~~~d~~~id~~~Gt--------~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 146 (413)
+|.+||+++++||+ .+|||+||++||++||+||||+|+||++.++++.+....+| .|.. .+
T Consensus 347 ~~~~~~a~~~~yGt~p~~~~~~~~efk~lV~~~H~~GI~VILDvV~NH~a~~~~~~~~~p~yy-----~~~~------~d 415 (877)
T 3faw_A 347 DPQSYFALSGMYSEKPKDPSARIAELKQLIHDIHKRGMGVILDVVYNHTAKTYLFEDIEPNYY-----HFMN------ED 415 (877)
T ss_dssp SBSCSSSBCSTTCSCTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTCCSCTHHHHTTSTTTS-----BCBC------TT
T ss_pred CcCccccccccccCCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeeccccCccccccCCCcee-----eeeC------CC
Confidence 99999999999999 69999999999999999999999999999765322111001 0000 00
Q ss_pred CCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC---C-CeEEEcccCC
Q 015125 147 GLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYWDS 222 (413)
Q Consensus 147 ~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~---~-~~~vgE~~~~ 222 (413)
+... . ..+.+++|+++|.||++|++++++|++++||||||||++++++.++|++++.+++ | .+++||.|..
T Consensus 416 g~~~----~-~~~g~~ln~~~p~Vr~~i~d~l~~Wv~e~gVDGFRfD~a~~~~~~~~~~~~~~~~~~~P~~~ligE~Wd~ 490 (877)
T 3faw_A 416 GSPR----E-SFGGGRLGTTHAMSRRVLVDSIKYLTSEFKVDGFRFDMMGDHDAAAIELAYKEAKAINPNMIMIGEGWRT 490 (877)
T ss_dssp SCBC----E-ETTEECBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHHHCTTCEEEECCCSC
T ss_pred CCee----c-cCCCcccccCCHHHHHHHHHHHHHHHHHcCCcEEEEecCCcCCHHHHHHHHHHHHhhCCCcEEEEccccc
Confidence 0000 0 1124789999999999999999999988999999999999999999999887764 4 7889999974
Q ss_pred CCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc----------------hhhhhhhcCCCCCcc-
Q 015125 223 CNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ----------------FWRLRDAQGKPPGVM- 285 (413)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~----------------~~~~~~~~~~~~~~~- 285 (413)
... ...+......+....+.+ ..+. ++..++++++|. ...+..........+
T Consensus 491 ~~g---~~~~~~~~~~~~~~~~~~----~i~~----f~d~iR~~~rg~~~~~~~~gf~~g~~~~l~~~~~~l~~~~~~~~ 559 (877)
T 3faw_A 491 FQG---DQGKPVKPADQDWMKSTD----TVGV----FSDDIRNSLKSGFPNEGTPAFITGGPQSLQGIFKNIKAQPGNFE 559 (877)
T ss_dssp CCC---BTTBCCCBSSGGGGGGCS----SEEE----ECHHHHHHHHCCTTCTTCCCGGGTCCEEHHHHHHHHTTCCSSSC
T ss_pred ccc---cccccccccchhhhhcCC----ccch----hhHHHHHHHccccccccchhhhcCCcHHHHHHHHHhhcCccccc
Confidence 210 000000000000001100 0111 234445544321 122333222111111
Q ss_pred cccCCcceecccCCCCCcCCCCCCC----C--------hhHHHHHHHHHhcCCCeeEEecCcccCCc-------------
Q 015125 286 GWWPSRAVTFLDNHDTGSTQAHWPF----P--------SNHIMEGYAYILMHPGIPSVFYDHFYDWG------------- 340 (413)
Q Consensus 286 ~~~p~~~v~flenHD~~R~~~~~~~----~--------~~~~~la~a~ll~~pGiP~Iy~G~E~gw~------------- 340 (413)
...|..+|+|++|||+.|+.+.+.. + .++.++|++++|++||+||||+|||++-.
T Consensus 560 ~~~P~~sVnFV~nHD~~tl~Dlls~~~k~n~~~~~~~~~~r~~lA~alllls~GiP~i~~GdE~grs~~gnnn~Ycq~~~ 639 (877)
T 3faw_A 560 ADSPGDVVQYIAAHDNLTLHDVIAKSINKDPKVAEEDIHRRLRLGNVMILTSQGTAFIHSGQEYGRTKRLLNPDYMTKVS 639 (877)
T ss_dssp CSSGGGEEECSCCSSSSCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTSSSEEEEETTTTTTCCCBCCCGGGSSCCC
T ss_pred cCCccceeeeeecccchhHHhhhhhhhcCCcccCHHHHHHHHHHHHHHHHhcCCccccccchhhhcccCCCccccccccc
Confidence 2356789999999999986554321 1 34789999999999999999999997510
Q ss_pred ------------------------------------------------hhHHHHHHHHHHHHHhCcccCCCCe-------
Q 015125 341 ------------------------------------------------DSIHNQIVKLMDVRRQQDIHSRSSI------- 365 (413)
Q Consensus 341 ------------------------------------------------~~l~~~i~~L~~lR~~~p~l~~G~~------- 365 (413)
.++++++++|++||+++|+|+.+++
T Consensus 640 ~D~~p~k~~~~d~p~~~~~f~~nsy~s~d~in~~DW~~~~~~~~~~~~~~l~~~~k~Li~lRk~~palr~~~~~~i~~~v 719 (877)
T 3faw_A 640 DDKLPNKATLIEAVKEYPYFIHDSYDSSDAINHFDWAAATDNNKHPISTKTQAYTAGLITLRRSTDAFRKLSKAEIDREV 719 (877)
T ss_dssp GGGCCTTEEECTTCSSSCEEESCCTTCCHHHHSCCHHHHHCTTTCHHHHHHHHHHHHHHHHHHHCGGGSCSCHHHHHHHC
T ss_pred cccccccccccccccccccccccccCCcccccccccccccccccccccHHHHHHHHHHHHHHhhChhhhCCchHhhcCce
Confidence 2488999999999999999998853
Q ss_pred EEEEe--------cCCEEEEEE----CCEEEEEEcCCC
Q 015125 366 KILEA--------QSNLYSAII----GDKVCMKIGDGS 391 (413)
Q Consensus 366 ~~~~~--------~~~~~~~~r----~~~~lv~lnn~~ 391 (413)
+++.. ++.+++|.+ ++.++|++|.+.
T Consensus 720 ~~~~~~~~~~~~~~~~vlay~~~~~~~~~~lVv~N~~~ 757 (877)
T 3faw_A 720 SLITEVGQGDIKEKDLVIAYQTIDSKGDIYAVFVNADS 757 (877)
T ss_dssp EESSCTTSTTCCSEESEEEEEEECTTCCEEEEEEECSS
T ss_pred EEEcCCCCCCcCcCCCEEEEEEECCCCCEEEEEEeCCC
Confidence 33333 246899976 357888888855
|
| >2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-51 Score=445.34 Aligned_cols=344 Identities=18% Similarity=0.284 Sum_probs=238.8
Q ss_pred ceeEEEeeecCCCCC-----------ccHHHHHhhhhhHHHcCCCEEEcCCCCCC-------------------CC-CCC
Q 015125 25 REILFQGFNWESCKH-----------DWWRNLERKVPDISKSGFTSVWLPPATHS-------------------FA-PEG 73 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~-----------g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~-------------------~~-~~g 73 (413)
..+||+++.++|+.+ |+|+||+++|+|||+||||+||||||+++ .. +||
T Consensus 458 ~~vIYE~hv~~ft~~~~~~~~~~~~~Gt~~gl~~~LdyLk~LGvtaV~L~Pv~~~~~~~e~~~~~~~~~y~~~~~~ynwG 537 (1014)
T 2ya1_A 458 DAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWG 537 (1014)
T ss_dssp GCCEEEECHHHHHCCGGGTTTCSSCTTSHHHHHTTHHHHHHHTCSEEEESCCBCBSSCBGGGTTSCCCSCCSSSCSCCCS
T ss_pred ccEEEEEecCCCCCCCCccccccCCCcCHHHHHHHhHHHHHcCCCeEEecCcccccccccccccccccccccCcCCcccC
Confidence 468999999977643 89999999999999999999999999973 11 399
Q ss_pred CCcccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccC
Q 015125 74 YLPQNLYSLNSSYGS--------EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCT 145 (413)
Q Consensus 74 Y~~~d~~~id~~~Gt--------~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 145 (413)
|+|.+||+++++||+ .+|||+||++||++||+||||+|+||++.+++..+ . .+.|... ...
T Consensus 538 Y~~~~y~a~~~~ygt~p~~~~~~~~efk~lV~~~H~~GI~VIlDvV~NHt~~~~~~~~-----~---~~~yy~~--~~~- 606 (1014)
T 2ya1_A 538 YDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDLFED-----L---EPNYYHF--MDA- 606 (1014)
T ss_dssp CSBSCSSSBCSTTCSCTTCTTHHHHHHHHHHHHHHTTTCEEEEEECTTCCSCHHHHHT-----T---STTTSBC--BCT-
T ss_pred CCcCcCccccccccCCCccccchHHHHHHHHHHHHHcCCEEEEEEecccccccccccc-----C---CCCeeEE--eCC-
Confidence 999999999999998 69999999999999999999999999998653111 0 0111100 000
Q ss_pred CCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhh---CC-CeEEEcccC
Q 015125 146 GGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGA---RP-IFSVGEYWD 221 (413)
Q Consensus 146 ~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~---~~-~~~vgE~~~ 221 (413)
+ +.. ...+ ..+++|+++|+||++|++++++|++++||||||||++++++.++|+++..++ .| .++|||.|.
T Consensus 607 ~--g~~--~~~~-~~~~l~~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~ligE~W~ 681 (1014)
T 2ya1_A 607 D--GTP--RTSF-GGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDHDAASIEEAYKAARALNPNLIMLGEGWR 681 (1014)
T ss_dssp T--CCB--CEET-TEECBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHHHCTTCEEEECCCS
T ss_pred C--CCc--ccCC-CCCCcCcCCHHHHHHHHHHHHHHHHhcCceEEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeecc
Confidence 0 000 0011 1367999999999999999999999999999999999999999999887765 35 789999997
Q ss_pred CCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHh---------cc---chhhhhhhcCCCCC-ccccc
Q 015125 222 SCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV---------KG---QFWRLRDAQGKPPG-VMGWW 288 (413)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~---------~g---~~~~~~~~~~~~~~-~~~~~ 288 (413)
... +...+... .....|....+ ....|+..++..++..+ .| ....+...+...+. +....
T Consensus 682 ~~~---g~~~~~~~---~~~~~w~~~~~-~~~~f~d~~r~~l~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~~ 754 (1014)
T 2ya1_A 682 TYA---GDENMPTK---AADQDWMKHTD-TVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPTNFEADS 754 (1014)
T ss_dssp CCC---CSTTCCCC---BSSGGGGGGCS-SSEEECHHHHHHHSCCTTSTTCCCTTTTCCEEHHHHHHHHTTCCSSSCCSS
T ss_pred ccc---Cccccccc---ccccchhhcCC-cccchhHHHHHHHhcccccccchhhhccCcccHHHHHHHHhcCccccccCC
Confidence 411 11111000 00012322111 13345544443333211 01 11122222221111 11234
Q ss_pred CCcceecccCCCCCcCCCCC-----CCC---------hhHHHHHHHHHhcCCCeeEEecCcccCC---------------
Q 015125 289 PSRAVTFLDNHDTGSTQAHW-----PFP---------SNHIMEGYAYILMHPGIPSVFYDHFYDW--------------- 339 (413)
Q Consensus 289 p~~~v~flenHD~~R~~~~~-----~~~---------~~~~~la~a~ll~~pGiP~Iy~G~E~gw--------------- 339 (413)
|...|+|++|||+.|+...+ ... ..++++|++++|++||+||||||+|+|-
T Consensus 755 p~~~vnfv~nHD~~~l~d~v~~~~~~~~~~~~~~~~~~~~~rla~~lll~spGiP~i~~GdE~g~t~~~~d~~~r~~~~~ 834 (1014)
T 2ya1_A 755 PGDVIQYIAAHDNLTLFDIIAQSIKKDPSKAENYAEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAYRTPVAE 834 (1014)
T ss_dssp GGGEEECSCCSSSSCHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHTSSSEEEEETTTTTTCCCBCCCGGGSSCCCT
T ss_pred hhhheEeeecCCCCcccchhhhhccCCcccchhhHHHHHHHHHHHHHHHhCCCCcEEEechhhcccCCCCChhhhhhhhc
Confidence 66889999999999864321 111 1378999999999999999999999742
Q ss_pred ---------------------------------------c-----------hhHHHHHHHHHHHHHhCcccCCCCeEEE-
Q 015125 340 ---------------------------------------G-----------DSIHNQIVKLMDVRRQQDIHSRSSIKIL- 368 (413)
Q Consensus 340 ---------------------------------------~-----------~~l~~~i~~L~~lR~~~p~l~~G~~~~~- 368 (413)
. .++++++|+||+||+++|+|+.|++..+
T Consensus 835 g~~~e~~~~~~~~~g~~f~~~~~~~dsy~~~~~~n~ldW~~~~~~~~~~~~~~l~~f~r~Li~LRk~~pal~~g~~~~~~ 914 (1014)
T 2ya1_A 835 DKVPNKSHLLRDKDGNPFDYPYFIHDSYDSSDAVNKFDWTKATDGKAYPENVKSRDYMKGLIALRQSTDAFRLKSLQDIK 914 (1014)
T ss_dssp TTCCTTEEEEECTTSCEEEEEEEESCCTTCCHHHHCCCHHHHHCTTTCHHHHHHHHHHHHHHHHHHHCGGGSCSCHHHHH
T ss_pred ccccchhhhhhcccccccccccccccCCCCCccccccCCccccccccccchHHHHHHHHHHHHHHhhCccccCCchhhhc
Confidence 1 1488999999999999999999986432
Q ss_pred ------E--------ecCCEEEEEE----CCEEEEEEcCCC
Q 015125 369 ------E--------AQSNLYSAII----GDKVCMKIGDGS 391 (413)
Q Consensus 369 ------~--------~~~~~~~~~r----~~~~lv~lnn~~ 391 (413)
. .++.+++|.| ++.++|++|.+.
T Consensus 915 ~~~~~~~~~g~~~~~~~~~v~a~~r~~~~~~~~lVv~N~~~ 955 (1014)
T 2ya1_A 915 DRVHLITVPGQNGVEKEDVVIGYQITAPNGDIYAVFVNADE 955 (1014)
T ss_dssp HHEEESSCTTSTTCCSEESEEEEEEECTTSCEEEEEEECSS
T ss_pred CceEEEcCCCCCcccCCCcEEEEEEECCCCCEEEEEEcCCC
Confidence 1 1235889987 357889999865
|
| >2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-50 Score=438.01 Aligned_cols=345 Identities=16% Similarity=0.181 Sum_probs=235.4
Q ss_pred eeEEEeeecCCCC---------CccHHHHHh-------hhhhHHHcCCCEEEcCCCCCC---------------------
Q 015125 26 EILFQGFNWESCK---------HDWWRNLER-------KVPDISKSGFTSVWLPPATHS--------------------- 68 (413)
Q Consensus 26 ~~i~~~f~~~~~~---------~g~~~gi~~-------~L~yLk~lGv~~I~L~Pi~~~--------------------- 68 (413)
.+||+++.++|+. .|+|.|+++ +|+|||+||||+||||||++.
T Consensus 424 ~vIYE~hvr~ft~~~~~~~~~~~Gt~~g~~e~~~~~i~~L~~L~~lGvt~i~LlPv~~~~~v~e~~~~~~~~~~p~~~~~ 503 (1083)
T 2fhf_A 424 MTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLC 503 (1083)
T ss_dssp CEEEEECHHHHHTTCTTSCGGGTTSGGGGGCTTSHHHHHHHHHHHHTCCEEEESCCEEESSSCCCGGGCCCTTSBHHHHH
T ss_pred cEEEEEecchhcCCCCCCCcCCCCChhhhhhhhhhhHHHHHHHHhcCCCEEEECCccccccccccccccccccccccccc
Confidence 4999999998776 389999976 699999999999999999952
Q ss_pred -------------------------------------------------CC-CCCCCcccCCCCCCCCCC-------HHH
Q 015125 69 -------------------------------------------------FA-PEGYLPQNLYSLNSSYGS-------EHL 91 (413)
Q Consensus 69 -------------------------------------------------~~-~~gY~~~d~~~id~~~Gt-------~~~ 91 (413)
.+ +|||+|.|||+++|+||+ .+|
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~d~~nwGYd~~~y~a~~~~yGt~p~~~~r~~e 583 (1083)
T 2fhf_A 504 EVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIKE 583 (1083)
T ss_dssp HHCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTTBCHHHHHHHHHTTSSSCCCCCCEEEEEEECSTTSSCCSTTHHHHH
T ss_pred ccccccccccccccccccccchhhhhcccccccchhhhhhhhhccccccCCCCCCCCcCcCCCcChhhcCCCCccccHHH
Confidence 11 399999999999999999 899
Q ss_pred HHHHHHHHHHc-CCEEEEEEccccCcCCCCCCCCcc-cccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHH
Q 015125 92 LKALLHKMKQH-KVRAMADIVINHRVGTTQGHGGKY-NRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHF 169 (413)
Q Consensus 92 ~~~Lv~~~h~~-Gi~VilD~V~NH~~~~~~~~~~~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~ 169 (413)
||+||++||++ ||+||||+|+||++.++++....+ .... +..+.... .. ++.. ..+.+..++|++||+
T Consensus 584 fk~LV~~~H~~~GI~VILDvV~NHt~~~~~~~~~~~~d~~~--p~yy~~~~--p~-~g~~-----~~~tg~~dln~~~p~ 653 (1083)
T 2fhf_A 584 FRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIV--PWYYQRLN--ET-TGSV-----ESATCCSDSAPEHRM 653 (1083)
T ss_dssp HHHHHHHHHHTSCCEEEEEECTTEESCCSSSCTTCCHHHHS--TTTSBCBC--TT-TCCB-----CCTTSSEEBCTTSHH
T ss_pred HHHHHHHHHhhcCCEEEEEeccccCcCCCccchhccccCCC--CCceeecC--CC-CCce-----ecCCccCCcCcCCHH
Confidence 99999999998 999999999999999987654211 1100 00111000 00 1100 113345688999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhh---CC-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhh
Q 015125 170 VRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGA---RP-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWI 245 (413)
Q Consensus 170 vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~---~~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (413)
||++|++++++|+++|||||||||++++++.++|.++++++ .| .++|||.|...+.. ......+ ...
T Consensus 654 Vr~~i~d~l~~W~~e~gVDGfR~D~a~~~~~~~~~~~~~~l~~~~p~~~ligE~w~~~~~~-~~~~a~q--------~~~ 724 (1083)
T 2fhf_A 654 FAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQILSAWERIKALNPDIYFFGEGWDSNQSD-RFEIASQ--------INL 724 (1083)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHTTCTTCEEEECCCCCSCTT-TSCBCCT--------TTT
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCcccCCHHHHHHHHHHHHHhCCCeEEEEeeccCcccc-chhhhhh--------hhc
Confidence 99999999999999999999999999999999999888765 34 78999999753210 0000000 000
Q ss_pred ccCCCcccccCccchHHHHH--------------------------------------------Hhccchhh--------
Q 015125 246 DGTGQLSAAFDFTTKGILQE--------------------------------------------AVKGQFWR-------- 273 (413)
Q Consensus 246 ~~~~~~~~~~df~~~~~l~~--------------------------------------------~~~g~~~~-------- 273 (413)
. +...+.|+..++..++. ...+....
T Consensus 725 ~--g~~ig~fnd~~Rd~vr~~~~F~~g~~l~~~~gf~~G~~~~p~~~~~~~a~rl~~~~d~~~~~~~g~l~~f~~~~~~g 802 (1083)
T 2fhf_A 725 K--GTGIGTFSDRLRDAVRGGGPFDSGDALRQNQGVGSGAGVLPNELTTLSDDQARHLADLTRLGMAGNLADFVLIDKDG 802 (1083)
T ss_dssp T--TSSCEEECHHHHHHHHCSCTTCCTTHHHHCCCGGGTTTTSCCSSCCCCHHHHHHHHHHHHHHHTTCBTTCEEECTTS
T ss_pred c--CCchhhhhHHHHHHHhccCccccccccccccceeeccccccccchHHHHHHhhchhhhhhhhhhhhhhhhhhccccc
Confidence 0 00011122222221111 00010000
Q ss_pred --hhh---hcCCCCCcccccCCcceecccCCCCCcCCCCC---CC-------ChhHHHHHHHHHhcCCCeeEEecCcccC
Q 015125 274 --LRD---AQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHW---PF-------PSNHIMEGYAYILMHPGIPSVFYDHFYD 338 (413)
Q Consensus 274 --~~~---~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~---~~-------~~~~~~la~a~ll~~pGiP~Iy~G~E~g 338 (413)
+.. .+......+...|...++|++|||+.|+.+.+ .. ..++++++++++|++||+||||||||+|
T Consensus 803 ~~l~gs~~~y~~~~~~~~~~p~~~infl~nHD~~rL~D~vs~~~~~~~~~~~r~r~~kla~alLlts~GiP~IY~GdEiG 882 (1083)
T 2fhf_A 803 AVKRGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISYKAAQEADLDTRVRMQAVSLATVMLGQGIAFDQQGSELL 882 (1083)
T ss_dssp CEEEGGGSEETTEESCCBSSGGGEEECSCCSSSSCHHHHHHHHSCTTCCHHHHHHHHHHHHHHHHTSSSEEEEETTGGGT
T ss_pred cccccchhhhcccccccccCccceeeeeccCCcchhhhhhhhhcCCccchHHHHHHHHHHHHHHHHCCCCcEEEeehhcC
Confidence 000 00000000112345789999999999964321 10 1245789999999999999999999974
Q ss_pred Cc----------------------------------------------------------hhHHHHHHHHHHHHHhCccc
Q 015125 339 WG----------------------------------------------------------DSIHNQIVKLMDVRRQQDIH 360 (413)
Q Consensus 339 w~----------------------------------------------------------~~l~~~i~~L~~lR~~~p~l 360 (413)
-. .++++++|+||+||+++|+|
T Consensus 883 ~t~~gn~n~Y~~~d~~n~~dW~~~dN~ws~g~p~~~~~~~~W~~~~~~~~~nv~~q~~d~~sl~~f~r~LI~LRk~~paL 962 (1083)
T 2fhf_A 883 RSKSFTRDSYDSGDWFNRVDYSLQDNNYNVGMPRSSDDGSNYDIIARVKDAVATPGETELKQMTAFYQELTALRKSSPLF 962 (1083)
T ss_dssp CCCTTCSCCTTSHHHHHCCCTTCSCCSCSSSCCCHHHHGGGHHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHHHTSCGGG
T ss_pred CcCCcccCccccccccccccccccCccccccccccccccCCchhccccccccccccccCHHHHHHHHHHHHHHHhhCHHh
Confidence 21 35899999999999999999
Q ss_pred CCCCe-------EEEEec----CCEEEEEE-C------------CEEEEEEcCCC
Q 015125 361 SRSSI-------KILEAQ----SNLYSAII-G------------DKVCMKIGDGS 391 (413)
Q Consensus 361 ~~G~~-------~~~~~~----~~~~~~~r-~------------~~~lv~lnn~~ 391 (413)
+.|+. .++..+ .++++|.| . +.++|++|.+.
T Consensus 963 r~g~~~~i~~~v~~~~~~~~~~~~vlaf~R~~~~~~~~~~d~~~~~llVv~N~s~ 1017 (1083)
T 2fhf_A 963 TLGDGATVMKRVDFRNTGADQQTGLLVMTIDDGMQAGASLDSRVDGIVVAINAAP 1017 (1083)
T ss_dssp GCCCHHHHHHHEEEESCSTTCCTTEEEEEEECSTTTSSCSCTTEEEEEEEEECSS
T ss_pred cCCccccccceEEEecCCCCCCCCEEEEEEcCCCccccccCCCCCEEEEEEeCCC
Confidence 99984 455443 57999998 2 25888888864
|
| >4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=401.35 Aligned_cols=189 Identities=19% Similarity=0.186 Sum_probs=144.2
Q ss_pred CceeEEEeeecCCC---------CCccHHHH-------HhhhhhHHHcCCCEEEcCCCCCCC------------------
Q 015125 24 GREILFQGFNWESC---------KHDWWRNL-------ERKVPDISKSGFTSVWLPPATHSF------------------ 69 (413)
Q Consensus 24 ~~~~i~~~f~~~~~---------~~g~~~gi-------~~~L~yLk~lGv~~I~L~Pi~~~~------------------ 69 (413)
...|||++.+++|+ ..|+|.|+ +++|+|||+||||+||||||++++
T Consensus 251 ~~~vIYE~HVr~ft~~~~~~~~~~~Gtf~g~~~~~~~~ie~L~yLk~LGVtaveLmPv~e~~~~~~~~~~~~~~d~~~l~ 330 (884)
T 4aio_A 251 SDITIYELHIRDFSAHDGTVDSDSRGGFRAFAYQASAGMEHLRKLSDAGLTHVHLLPSFHFAGVDDIKSNWKFVDECELA 330 (884)
T ss_dssp GGCCEEEECHHHHHTTCTTSCTTTTTSGGGGSCTTSHHHHHHHHHHHHTCCEEEECCCEEESSSCSCGGGCCCCCHHHHT
T ss_pred ccCEEEEEEcCccccCCCCCCccccCcccccccchhhHHHHhHHHHHcCCCEEEeccccccCcccccccccccccccccc
Confidence 33689999998664 23788764 899999999999999999999864
Q ss_pred ---------------------CCCCCCcccCCCCCCCCCCH-------HHHHHHHHHHHHcCCEEEEEEccccCcCCCCC
Q 015125 70 ---------------------APEGYLPQNLYSLNSSYGSE-------HLLKALLHKMKQHKVRAMADIVINHRVGTTQG 121 (413)
Q Consensus 70 ---------------------~~~gY~~~d~~~id~~~Gt~-------~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~ 121 (413)
.+|||+|.+||+++++|||. ++||+||++||++||+||||+|+||++.+|+|
T Consensus 331 ~~~~~~~~~~~l~~~~~~~~~~~WGYd~~~y~a~~~~ygt~~d~~~~~~efk~LV~~aH~~GIkVIlDvV~NHts~~h~w 410 (884)
T 4aio_A 331 TFPPGSDMQQAAVVAIQEEDPYNWGYNPVLWGVPKGSYASDPDGPSRIIEYRQMVQALNRIGLRVVMDVVYNHLDSSGPC 410 (884)
T ss_dssp TSCTTCSHHHHHHHHHTTTSSCCCCCCEEEEEEECGGGSSCSSTTHHHHHHHHHHHHHHHTTCEEEEEECCSBCSCCSSS
T ss_pred ccCCchHHHHhhhhhhhhccccccCcCcccccCCCcccccCccccchHHHHHHHHHHHHhcCCceeeeeccccccCCCcc
Confidence 26999999999999999994 56999999999999999999999999999987
Q ss_pred CCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHH
Q 015125 122 HGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAK 201 (413)
Q Consensus 122 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~ 201 (413)
+.............|... .++. .......+++|+++|.|++++++.+++|+++++|||||+|.+..+..+
T Consensus 411 f~~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~v~~~~~d~~~~w~~~~~vDg~R~D~~~~~~~~ 480 (884)
T 4aio_A 411 GISSVLDKIVPGYYVRRD-----TNGQ-----IENSAAMNNTASEHFMVDRLIVDDLLNWAVNYKVDGFRFDLMGHIMKR 480 (884)
T ss_dssp STTCCHHHHSTTTSBCBC-----TTSC-----BCCTTSSSBBCTTSHHHHHHHHHHHHHHHHHSCCCEEEETTGGGSBHH
T ss_pred hhhccccccCcceeeccC-----CCCC-----ccCcCCccccCCCCchhhhhhhhhhhhhhhhcccccCCcccchhhhhH
Confidence 643211100000111100 0000 011244678899999999999999999999999999999999999877
Q ss_pred HHHHHHHhhC------------CCeEEEcccCC
Q 015125 202 YVKEYIEGAR------------PIFSVGEYWDS 222 (413)
Q Consensus 202 ~~~~~~~~~~------------~~~~vgE~~~~ 222 (413)
.+..+..... ...+++|.|..
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~ 513 (884)
T 4aio_A 481 TMMRAKSALQSLTTDAHGVDGSKIYLYGEGWDF 513 (884)
T ss_dssp HHHHHHHHHHTCCHHHHSSCGGGCEEEECCCCC
T ss_pred HHHhhhhhcccccccccccccccceecccCCcc
Confidence 6555443321 25678998865
|
| >1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-43 Score=363.33 Aligned_cols=183 Identities=15% Similarity=0.153 Sum_probs=142.1
Q ss_pred CCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 36 SCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 36 ~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
+...|+|++|+++|+|||+||||+|||+||+++. ++|||+|.||++|+|+||++++|++||++||++||+||+|+|+|
T Consensus 10 ~~~gGtf~gi~~~LdYLk~LGVtaIwLsPi~~~~~gs~hGYdv~Dy~~Idp~lGt~edfk~LV~aaH~~GIkVIlDvV~N 89 (720)
T 1iv8_A 10 LNKNFNFGDVIDNLWYFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQDIVPN 89 (720)
T ss_dssp CBTTBCHHHHHHTHHHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEECTTTTHHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEECCcccCCCCCCCCCCCccCCCcCccCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4456899999999999999999999999999975 79999999999999999999999999999999999999999999
Q ss_pred cCc--CCCCCC--------CCcccccCC-CCC------------------------CCCCC--CeeccC------CC---
Q 015125 114 HRV--GTTQGH--------GGKYNRYDG-IPL------------------------SWDEH--AVTSCT------GG--- 147 (413)
Q Consensus 114 H~~--~~~~~~--------~~~y~~~~~-~~~------------------------~~~~~--~~~~~~------~~--- 147 (413)
||+ .+++|+ .+.|..|.. .+. .|++. ....+. ++
T Consensus 90 Hta~~~~~~wf~d~l~~G~~s~y~d~f~~~~~~g~~~~P~~g~~yg~~l~~g~l~~~~d~g~~~~~Yy~~~fp~~~~~~~ 169 (720)
T 1iv8_A 90 HMAVNSLNWRLMDVLXMGXXSXYYTYFDFFPEDDKIRLPILGEDLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGND 169 (720)
T ss_dssp EEECCTTCHHHHHHHHHGGGSTTGGGBCBCTTCSSEEEEEESSCHHHHHHTTCEEEEECSSCEEEEETTEEEECSCCCSS
T ss_pred cccCccccHHHHHhhhcccccccccceeecCCCCcccCCcccccccccccccceeeeecCCCcchhhccccCCcCccccc
Confidence 999 666543 123322210 000 00000 000000 00
Q ss_pred --------------CC--CCcCC-CCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCC--cHHHHHHHHH
Q 015125 148 --------------LG--NGSTG-DNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY--SAKYVKEYIE 208 (413)
Q Consensus 148 --------------~~--~~~~~-~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i--~~~~~~~~~~ 208 (413)
|. -.+.. .++..+|+||++||+|++++++++++| ||||||+|+++++ +.+||+++.+
T Consensus 170 l~~~~~~q~yrl~~W~~~lNyr~f~d~~~L~dLn~enP~V~~~i~d~l~~W----GVDGFRiDaa~~L~~p~~f~~~lr~ 245 (720)
T 1iv8_A 170 IYDTLQKQNYTLMSWKNPPSYRRFFDVNTLIGVNVEXDHVFQESHSXILDL----DVDGYRIDHIDGLYDPEKYINDLRS 245 (720)
T ss_dssp HHHHHTTSSEEEEETTSCCSBCEETTEEEEEEBCTTSHHHHHHHTTTGGGS----CCSEEEETTGGGCSCHHHHHHHHHH
T ss_pred hhhhhhccceecccccccccccccccccCCcccccCcHHHHHHHHHHHHhc----CCCEEEEechhhhcChHHHHHHHHH
Confidence 00 00000 122468899999999999999999999 9999999999999 8999999999
Q ss_pred hhCCCeEEEcccCC
Q 015125 209 GARPIFSVGEYWDS 222 (413)
Q Consensus 209 ~~~~~~~vgE~~~~ 222 (413)
.++|.++|||.|..
T Consensus 246 ~v~p~~ligE~~~~ 259 (720)
T 1iv8_A 246 IIKNXIIIVEKILG 259 (720)
T ss_dssp HHTTCEEEECCCCC
T ss_pred HhccceEEeeccCC
Confidence 99887889999975
|
| >3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-32 Score=278.50 Aligned_cols=176 Identities=16% Similarity=0.192 Sum_probs=141.0
Q ss_pred CccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 39 HDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 39 ~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
.|+|++++++|+||++|||++|||+||+++. ++|||+|.||++|+|+||++++|++||++||++||+||+|+|+|||+
T Consensus 11 gGtf~~i~~~LdyL~~LGvt~V~LsPi~e~~~~s~~GYd~~Dy~~vdp~lGt~edfk~LV~~aH~~GI~VilDvV~NH~s 90 (704)
T 3hje_A 11 PMKFSEIRNRLDYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNTINDELGGEEEYIRLIDEAKSKGLGIIQDIVPNHMA 90 (704)
T ss_dssp SCCHHHHHTTHHHHHHHTCSEEEECCCEEESTTCSSSCSEEEEEEECGGGTHHHHHHHHHHHHHHHTCEEEEEECCSEEE
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCccCCCCCCCCCCCcCCCCcCccCCCHHHHHHHHHHHHHCCCEEEEeecccccc
Confidence 4679999999999999999999999999975 68999999999999999999999999999999999999999999999
Q ss_pred C--CCCCC--------CCcccccCCCCCCCCCC--Cee---------ccCC-----------------------------
Q 015125 117 G--TTQGH--------GGKYNRYDGIPLSWDEH--AVT---------SCTG----------------------------- 146 (413)
Q Consensus 117 ~--~~~~~--------~~~y~~~~~~~~~~~~~--~~~---------~~~~----------------------------- 146 (413)
. +++|+ .+.|..|. +|.+. .+. .+.+
T Consensus 91 ~~~~~~wf~d~l~~g~~s~Y~d~F----~W~~~~g~v~~P~lg~~~~~y~~~l~~G~i~lY~d~~Pl~p~~~~~~~~l~~ 166 (704)
T 3hje_A 91 VHHTNWRLMDVLKKGRHSRYYNYF----DFYEEEEKIRIPILGDRNFKITYVNDEPYLDYYGNLFPINDEGRNYLNDIEK 166 (704)
T ss_dssp CSTTCHHHHHHHHHGGGSGGGGGB----CBCTTCSSEEEEEESSCCCEEEEETTEEEEEETTEEEECCTTGGGCTTCHHH
T ss_pred cccchHHHHHHHhcCCCCCCCccc----cccCCCCceecCcCCCCcccccccccCCceeeccccCCCCcccccccchhhh
Confidence 7 55542 23443321 12110 000 0000
Q ss_pred ----------CC---CCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCC--cHHHHHHHHHhhC
Q 015125 147 ----------GL---GNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY--SAKYVKEYIEGAR 211 (413)
Q Consensus 147 ----------~~---~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i--~~~~~~~~~~~~~ 211 (413)
.| .+..+.+...++++||+++|+|++.+.+++.+| ||||||+|+++++ |..+|+.+.+...
T Consensus 167 l~~~Q~Yrl~~w~~~~nyrRff~l~~L~dLn~e~p~V~~~i~~~L~~L----GVdGFRvDaadgL~DP~~yl~rLr~~~~ 242 (704)
T 3hje_A 167 LLKVQYYELVDWRDYPSYRRFFAVNELIAVRQELEWVFEDSHSKILSF----EVDGYRIDHIDGLFKPEEYLRRLKNKIG 242 (704)
T ss_dssp HHHTSSEEEEETTSCCSBCEETTEEEEEEBCTTSHHHHHHHHTTGGGS----CCSEEEETTGGGCSSHHHHHHHHHHHHT
T ss_pred hhhhhhhhhcccccccccccccccCCchhccCCCHHHHHHHHHHHHHc----CCCEEEEeCcCcccCHHHHHHHHHHhCC
Confidence 00 011122344678899999999999999999999 9999999999999 8999999998887
Q ss_pred CCeEEEcccCC
Q 015125 212 PIFSVGEYWDS 222 (413)
Q Consensus 212 ~~~~vgE~~~~ 222 (413)
+.++++|....
T Consensus 243 ~~~iv~EkIl~ 253 (704)
T 3hje_A 243 NKHIFVEKILS 253 (704)
T ss_dssp TCEEEECCCCC
T ss_pred CcEEEEEEeCC
Confidence 78999998754
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=276.42 Aligned_cols=213 Identities=16% Similarity=0.271 Sum_probs=155.2
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHHHHHHHh---------hcCCCeEeecccCCCcHHHHHHHHHhhC-------------
Q 015125 154 GDNFHGVPNIDHTQHFVRKDIIAWLRWLRN---------TVGFQDFRFDFARGYSAKYVKEYIEGAR------------- 211 (413)
Q Consensus 154 ~~~~~~~~dln~~~~~vr~~l~~~~~~w~~---------~~gvDGfR~D~a~~i~~~~~~~~~~~~~------------- 211 (413)
++.+..+||||++||+||++++++++||++ ++||||||+|+|+|++++||+++++.++
T Consensus 186 ~y~l~~~~DLN~~NP~Vr~~l~~~~~~Wl~~~~i~~~~~~~GIDGFRlDAvkhv~~df~~~~~~~l~~~~~~~~~~~~~~ 265 (844)
T 3aie_A 186 GYEFLLANDVDNSNPVVQAEQLNWLHFLMNFGNIYANDPDANFDSIRVDAVDNVDADLLQIAGDYLKAAKGIHKNDKAAN 265 (844)
T ss_dssp CCSCCSSEEECTTSHHHHHHHHHHHHHHHTHHHHHHSCTTSCCCEEEETTGGGSCTHHHHHHHHHHHHHHCTTTBHHHHH
T ss_pred ceeeCCccccCCCCHHHHHHHHHHHHHHhhccccccccccCCCCEEEEehhhcCCHHHHHHHHHHHHHHhcccccccccC
Confidence 345777899999999999999999999996 6999999999999999999999876532
Q ss_pred CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhcc------chhhhhhhcCCCCCcc
Q 015125 212 PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG------QFWRLRDAQGKPPGVM 285 (413)
Q Consensus 212 ~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g------~~~~~~~~~~~~~~~~ 285 (413)
+.|+|||+|... . ..|+...++..++|||+++..+..++.. +..++.... +.
T Consensus 266 d~~~VGEvw~~~---------------~--~~Y~~~~~~~~~vfDFpl~~~l~~~l~~~~~~~~~L~~l~~~~-----l~ 323 (844)
T 3aie_A 266 DHLSILEAWSYN---------------D--TPYLHDDGDNMINMDNRLRLSLLYSLAKPLNQRSGMNPLITNS-----LV 323 (844)
T ss_dssp TSCCEECCCSTT---------------H--HHHHHHHTSSSBEECHHHHHHHHHHTTSCGGGCCCSTHHHHSS-----SS
T ss_pred CeEEEEecCCCC---------------h--HHHhhcCCCcceeeChHHHHHHHHHHHhhccCHHhHHHHHHHH-----HH
Confidence 258899999762 1 4566554567889999998888866521 223333321 11
Q ss_pred cccC------C-cceecccCCCCCcC---CCC-------------CCCCh---------------------hHHHHHHHH
Q 015125 286 GWWP------S-RAVTFLDNHDTGST---QAH-------------WPFPS---------------------NHIMEGYAY 321 (413)
Q Consensus 286 ~~~p------~-~~v~flenHD~~R~---~~~-------------~~~~~---------------------~~~~la~a~ 321 (413)
...| . .+++|++|||++|. .+. +..+. .+.++|+|+
T Consensus 324 ~~~p~~~~~~~~~~~tFldNHDt~R~~Ri~s~l~~~~~~~~~g~~~~~d~~~~~le~~~~~~~~~~k~y~~~~~~lA~Al 403 (844)
T 3aie_A 324 NRTDDNAETAAVPSYSFIRAHDSEVQDLIRDIIKAEINPNVVGYSFTMEEIKKAFEIYNKDLLATEKKYTHYNTALSYAL 403 (844)
T ss_dssp CCSEECCSSCSSCEEECSCCSSTTTHHHHHHHHHHHTCTTCCTTCCCHHHHHHHHHHHHHHHHCSSCSSSCSCHHHHHHH
T ss_pred hhCcccccccceeeEEEeeCCcCCCccchhhhhccccccccccccccchhhhhhhhhhhhhhhccccccchhHHHHHHHH
Confidence 1111 1 26899999999985 210 11000 115789999
Q ss_pred HhcCC-CeeEEecCcccCCc-------hhHHHHHHHHHHHHHhCcccCCCCeE---EEEecCCEEEEEE-CC--------
Q 015125 322 ILMHP-GIPSVFYDHFYDWG-------DSIHNQIVKLMDVRRQQDIHSRSSIK---ILEAQSNLYSAII-GD-------- 381 (413)
Q Consensus 322 ll~~p-GiP~Iy~G~E~gw~-------~~l~~~i~~L~~lR~~~p~l~~G~~~---~~~~~~~~~~~~r-~~-------- 381 (413)
||++| |+|+||||+|+|.. .++.+.|++|+++|++++ .|... ....+++++++.| +.
T Consensus 404 lLt~~~GiP~IYYGdEiGm~G~~~~~~~~~~d~I~~L~~~Rk~~~---~G~q~~~~~~~~~~~vla~~R~g~g~~srdn~ 480 (844)
T 3aie_A 404 LLTNKSSVPRVYYGDMFTDDGQYMAHKTINYEAIETLLKARIKYV---SGGQAMRNQQVGNSEIITSVRYGKGALKATDT 480 (844)
T ss_dssp HTTCSSSEEEEEHHHHBCSSSSTTCSBCTTHHHHHHHHHHHHHHC---CSCEEEEEEEETTEEEEEEEECCTTCSSTTCC
T ss_pred HHHhCCCCceEEeccccCCCCCCCCCcHHHHHHHHHHHHHHHHhh---hCCcccceeccCcccceEEEEecCCccccccc
Confidence 99998 99999999999874 367899999999999985 35443 2234467999988 32
Q ss_pred --------EEEEEEcCCC
Q 015125 382 --------KVCMKIGDGS 391 (413)
Q Consensus 382 --------~~lv~lnn~~ 391 (413)
.++|++||.+
T Consensus 481 rt~~~~~aG~~vvi~N~~ 498 (844)
T 3aie_A 481 GDRITRTSGVVVIEGNNP 498 (844)
T ss_dssp CCHHHHTCCEEEEEECCT
T ss_pred ccccCCCCCEEEEECCCC
Confidence 5777777755
|
| >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-29 Score=267.65 Aligned_cols=206 Identities=15% Similarity=0.272 Sum_probs=155.4
Q ss_pred cCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHh---------hcCCCeEeecccCCCcHHHHHHHHHhhC-----------
Q 015125 152 STGDNFHGVPNIDHTQHFVRKDIIAWLRWLRN---------TVGFQDFRFDFARGYSAKYVKEYIEGAR----------- 211 (413)
Q Consensus 152 ~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~---------~~gvDGfR~D~a~~i~~~~~~~~~~~~~----------- 211 (413)
..++.+..+||||++||+||++|+++++||++ ++||||||+|||+||+++||++++++++
T Consensus 236 ~g~~d~l~l~DLN~~NPeVr~el~~~~~~Wld~g~w~~~~~e~GVDGFRLDAVkhI~~dFl~ef~~~l~~~~~~~~~~~~ 315 (1039)
T 3klk_A 236 YGGAEFLLANDIDNSNPVVQAEELNWLYYLMNFGTITGNNPEANFDGIRVDAVDNVDVDLLSIARDYFNAAYNMEQSDAS 315 (1039)
T ss_dssp CCSCSCCSSEEECTTSHHHHHHHHHHHHHHHTHHHHHHSCTTSSCCEEEETTGGGSCTHHHHHHHHHHHHHHCGGGCHHH
T ss_pred cCCcccccccccCCCCHHHHHHHHHHHHHHHhhccccccccccCCCEEEEehhhcCCHHHHHHHHHHHHHHhcccccccc
Confidence 45677888999999999999999999999997 6999999999999999999999887653
Q ss_pred --CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccch---hhhhhhcCCCCCccc
Q 015125 212 --PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQF---WRLRDAQGKPPGVMG 286 (413)
Q Consensus 212 --~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~~---~~~~~~~~~~~~~~~ 286 (413)
+.|+|||+|..+ ...|+...++..+++||+++..+..++.... ..+.+.+.. .+..
T Consensus 316 a~d~f~VGEvw~~~-----------------~~~Yl~~~~~~~s~~Dfpl~~~l~~a~~~~~~~~~dL~~l~~~--~l~~ 376 (1039)
T 3klk_A 316 ANKHINILEDWGWD-----------------DPAYVNKIGNPQLTMDDRLRNAIMDTLSGAPDKNQALNKLITQ--SLVN 376 (1039)
T ss_dssp HTTSCCEECCCCTT-----------------HHHHHHHTTCSSBEECHHHHHHHHHHTSSCTTTCCCTTHHHHS--SSSC
T ss_pred cCCeEEEEecCCCC-----------------HHHHHhccCCccceechHHHHHHHHHhcccccchhhHHHHHHH--HHHh
Confidence 267899999752 1366665555678999999999998874221 123222221 1111
Q ss_pred ccC-------CcceecccCCCCCcC------CCC------CC-----------------------CChhHHHHHHHHHhc
Q 015125 287 WWP-------SRAVTFLDNHDTGST------QAH------WP-----------------------FPSNHIMEGYAYILM 324 (413)
Q Consensus 287 ~~p-------~~~v~flenHD~~R~------~~~------~~-----------------------~~~~~~~la~a~ll~ 324 (413)
..+ ...++|++|||++|. .+. +. ......++|+|++|+
T Consensus 377 ~~~~~a~~~~~~~vtFVdNHDt~R~~~i~~~is~~~~~~~l~~t~~~~~~al~~y~~d~~~~~k~y~~~~k~lAyAllLl 456 (1039)
T 3klk_A 377 RANDNTENAVIPSYNFVRAHDSNAQDQIRQAIQAATGKPYGEFNLDDEKKGMEAYINDQNSTNKKWNLYNMPSAYTILLT 456 (1039)
T ss_dssp CTEECCSSCSCCEEEESCBTTBTTHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHHTSSSCSSSCSCHHHHHHHHHH
T ss_pred cCCccccccccccceEeeCCcCCCcccccccccccccccccccchhhhhhhhhhhcccccccchhhhhhhHHHHHHHHHH
Confidence 112 245899999999983 000 00 001126788888887
Q ss_pred C-CCeeEEecCcccCCch-------hHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEE
Q 015125 325 H-PGIPSVFYDHFYDWGD-------SIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAII 379 (413)
Q Consensus 325 ~-pGiP~Iy~G~E~gw~~-------~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r 379 (413)
+ ||+|+||||||+|... +....|++|+++|+++ ..|.......+.+++++.|
T Consensus 457 ~~~GtP~IYYGDeyG~~G~~~~~~~p~~~~I~~Ll~aRk~y---a~G~Q~d~~d~~~vi~~vR 516 (1039)
T 3klk_A 457 NKDSVPRVYYGDLYQDGGQYMEHKTRYFDTITNLLKTRVKY---VAGGQTMSVDKNGILTNVR 516 (1039)
T ss_dssp CSSCEEEEEHHHHBCSSBSTTCSBCTTHHHHHHHHHHHHHH---CCSCEEEEECTTSCEEEEE
T ss_pred cCCCeEEEEechhcCCCCCCCcCCCcHHHHHHHHHHHHHHh---ccCCeeEeecCCCEEEEEE
Confidence 6 8999999999998753 5788999999999998 5677777777889999999
|
| >3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-23 Score=219.47 Aligned_cols=96 Identities=21% Similarity=0.308 Sum_probs=87.3
Q ss_pred CCceeEEEeeecCCCCCc-----cHHHHHhhhhhHHHcCCCEEEcCCCCCCC---------CCCCCCcccCCC----CCC
Q 015125 23 NGREILFQGFNWESCKHD-----WWRNLERKVPDISKSGFTSVWLPPATHSF---------APEGYLPQNLYS----LNS 84 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~~g-----~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~---------~~~gY~~~d~~~----id~ 84 (413)
.++.||||+|.|..+.+| +|.+|+++|||||+||||+||||||++++ .++||++.|+|. ++|
T Consensus 828 lds~Vi~QgF~W~~~~~g~~w~~Ty~~I~~kLdYLk~LGITaIwL~Pi~~s~~~~~~~~~~~d~GYdi~D~y~lGf~i~~ 907 (1108)
T 3ttq_A 828 LDSNLIYEGFSNFQPKATTHDELTNVVIAKNADVFNNWGITSFEMAPQYRSSGDHTFLDSTIDNGYAFTDRYDLGFNTPT 907 (1108)
T ss_dssp HHTCCEEECCCTTCCCCSSGGGSHHHHHHHTHHHHHHHTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSSSSCC
T ss_pred CCCceEEEeEECCCCCCCCccchhHHHHHHHHHHHHHcCCCEEEECCCccCCCccccccccccCCcccccccccCcCCCC
Confidence 345899999999888774 45599999999999999999999999976 378999999988 699
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 85 SYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 85 ~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
+||+++||++||++||++||+||||+|+||++..
T Consensus 908 ~yGt~edfk~LV~alH~~GI~VIlDvV~NHta~~ 941 (1108)
T 3ttq_A 908 KYGTDGDLRATIQALHHANMQVMADVVDNQVYNL 941 (1108)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCC
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEeccccccCC
Confidence 9999999999999999999999999999999853
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-22 Score=213.89 Aligned_cols=93 Identities=20% Similarity=0.414 Sum_probs=83.5
Q ss_pred ceeEEEeee-cCCCCC---cc-HHHHHhhhhhHHHcCCCEEEcCCCCCCCC---------CCCCCcccCCCCC----CCC
Q 015125 25 REILFQGFN-WESCKH---DW-WRNLERKVPDISKSGFTSVWLPPATHSFA---------PEGYLPQNLYSLN----SSY 86 (413)
Q Consensus 25 ~~~i~~~f~-~~~~~~---g~-~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~---------~~gY~~~d~~~id----~~~ 86 (413)
+.||||+|+ |.++++ ++ ++||+++|+|||+||||+|||+||++++. +|||+|.|||+|+ |+|
T Consensus 610 ~~ViYe~f~~~~s~~~~g~~~~~~gi~~~l~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~GY~~~d~~~i~es~~~~~ 689 (844)
T 3aie_A 610 SRVMFEGFSNFQAFATKKEEYTNVVIAKNVDKFAEWGVTDFEMAPQYVSSTDGSFLDSVIQNGYAFTDRYDLGISKPNKY 689 (844)
T ss_dssp TCCEEECCCTTCCCCSSGGGCHHHHHHHTHHHHHHTTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSCSSCBTT
T ss_pred ceEEEEeCCCcccCCCCCCcccHHHHHHHHHHHHHCCCCeEEECCcccCCCCCccccccCCCCCccccCccCCCCCCCCC
Confidence 479999999 433332 33 39999999999999999999999999873 6999999999999 999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 87 GSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 87 Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
|+.+||++||++||++||+||||+|+||++.
T Consensus 690 Gt~~df~~lv~~~H~~GI~VilD~V~NH~~~ 720 (844)
T 3aie_A 690 GTADDLVKAIKALHSKGIKVMADWVPDQMYA 720 (844)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEEECCSEECC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEccCcccC
Confidence 9999999999999999999999999999974
|
| >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-22 Score=215.26 Aligned_cols=95 Identities=20% Similarity=0.311 Sum_probs=85.6
Q ss_pred CceeEEEeeec-----CCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC---------CCCCCCcccCCC----CCCC
Q 015125 24 GREILFQGFNW-----ESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF---------APEGYLPQNLYS----LNSS 85 (413)
Q Consensus 24 ~~~~i~~~f~~-----~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~---------~~~gY~~~d~~~----id~~ 85 (413)
.+.|||++|.+ ....+|+|++|+++|||||+||||+||||||++++ .+|||++.|||+ ++|+
T Consensus 662 ~~~VIYEGFt~~~~~~~~~~~gt~~gi~~kldyLk~LGVtaIwL~Pi~~~~~~~~~~~~~~~~GYd~~d~~~~~~~i~~~ 741 (1039)
T 3klk_A 662 DSNVIYEGFSNFIYWPTTESERTNVRIAQNADLFKSWGITTFELAPQYNSSKDGTFLDSIIDNGYAFTDRYDLGMSTPNK 741 (1039)
T ss_dssp HTCCEEECCCTTBCCCSSGGGCHHHHHHHTHHHHHHTTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSCSSCBT
T ss_pred CCcEEEccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECccccCCcccccccCcCCCCCCcccccccccCCCCC
Confidence 35799999942 33345899999999999999999999999999985 689999999995 7899
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 86 YGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 86 ~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
||+.+||++||++||++||+||||+|+||++..
T Consensus 742 ~Gt~~efk~lV~alH~~GI~VIlDvV~NHta~~ 774 (1039)
T 3klk_A 742 YGSDEDLRNALQALHKAGLQAIADWVPDQIYNL 774 (1039)
T ss_dssp TBCHHHHHHHHHHHHHTTCEEEEEECCSEECCC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEccCCcCCC
Confidence 999999999999999999999999999999854
|
| >3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-17 Score=174.18 Aligned_cols=199 Identities=17% Similarity=0.226 Sum_probs=142.0
Q ss_pred CCCCCcCCCCCHHHHHHHHHHHHHHH---------hhcCCCeEeecccCCCcHHHHHHHHHhhC-------------CCe
Q 015125 157 FHGVPNIDHTQHFVRKDIIAWLRWLR---------NTVGFQDFRFDFARGYSAKYVKEYIEGAR-------------PIF 214 (413)
Q Consensus 157 ~~~~~dln~~~~~vr~~l~~~~~~w~---------~~~gvDGfR~D~a~~i~~~~~~~~~~~~~-------------~~~ 214 (413)
|.-..|+|.+||.||+.++.++.|++ .+.++||||+|||+++..++++.+.+-++ ..|
T Consensus 408 ~Ll~nDvDnsnP~Vqae~lnw~~~l~n~g~i~~~~~~~nfdG~RvDAvdnvdad~l~~~~~~~~~~yg~~~~~~~a~~h~ 487 (1108)
T 3ttq_A 408 FLLANDVDNSNPVVQAENLNWLHYLMNFGTITAGQDDANFDSIRIDAVDFIHNDTIQRTYDYLRDAYQVQQSEAKANQHI 487 (1108)
T ss_dssp CCSSEEECTTSHHHHHHHHHHHHHHHTHHHHHHSCTTSSCCEEEETTGGGSCHHHHHHHHHHHHHHHCTTSBHHHHTTSC
T ss_pred eEeecccccCChHHHHHHHHHHHHHhhcccccccCCCCCCceEEEechhccCHHHHHHHHHHHHHHhCCCccchhhhcce
Confidence 44457999999999999999999999 89999999999999999999987654321 367
Q ss_pred EEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhcc---chhhhhhhc----------CCC
Q 015125 215 SVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG---QFWRLRDAQ----------GKP 281 (413)
Q Consensus 215 ~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g---~~~~~~~~~----------~~~ 281 (413)
.|+|.|... ...|+. ..++||++++..+...+.. ....+...+ ...
T Consensus 488 si~E~W~~~-----------------~~~~~~----~~~l~D~~l~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~lv~r~ 546 (1108)
T 3ttq_A 488 SLVEAGLDA-----------------GTSTIH----NDALIESNLREAATLSLTNEPGKNKPLTNMLQDVDGGTLITDHT 546 (1108)
T ss_dssp CEESCSTTC-----------------HHHHTT----TCSBEECSHHHHHHHHTSSCTTSCCCGGGGSEEEETTEEEEECT
T ss_pred EEEeeccCC-----------------cchhcc----CccccchHHHHHHHHHhcCcccccccHHHHhhcccccceeeccc
Confidence 899999751 122333 1245899998888766522 112222221 111
Q ss_pred CCcccccCCcceecccCCCCCc-----------CCC------------------------CCCCChhHHHHHHHHHhcC-
Q 015125 282 PGVMGWWPSRAVTFLDNHDTGS-----------TQA------------------------HWPFPSNHIMEGYAYILMH- 325 (413)
Q Consensus 282 ~~~~~~~p~~~v~flenHD~~R-----------~~~------------------------~~~~~~~~~~la~a~ll~~- 325 (413)
.......+...++||.|||++- +.. ........+.+|||+||+.
T Consensus 547 ~~~~~~~a~pn~sFV~aHDs~~q~~i~~ii~~~~~~~~~~~t~~~~~qa~~~y~~d~~~~~k~y~~~~~PlAYAlILlrk 626 (1108)
T 3ttq_A 547 QNSTENQATPNYSIIHAHDKGVQEKVGAAITDATGADWTNFTDEQLKAGLELFYKDQRATNKKYNSYNIPSIYALMLTNK 626 (1108)
T ss_dssp EECCSSCSCCEEECSCCSSTTTHHHHHHHHHHHSCCBTTBCCHHHHHHHHHHHHHHHTSSSCSSSCSCHHHHHHHHHHCS
T ss_pred cccccCccccceEEEecccchhhhhHHHHHhhcccccccccCHHHHHHHHHhhhhhhhhhhhcccccccHHHHHHHHhcc
Confidence 1111122335699999999861 100 0111223578999999998
Q ss_pred CCeeEEecCcccCCch-------hHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEE
Q 015125 326 PGIPSVFYDHFYDWGD-------SIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAII 379 (413)
Q Consensus 326 pGiP~Iy~G~E~gw~~-------~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r 379 (413)
.|+|||||||.|+.+. +..+.|.+|++.|+.+ ..|.......+.+++.+.|
T Consensus 627 ~g~PcVfygDlY~~~g~~m~~~~~~~~~i~~Ll~AR~~y---a~G~Q~~~~d~~~~i~~vR 684 (1108)
T 3ttq_A 627 DTVPRMYYGDMYQDDGQYMANKSIYYDALVSLMTARKSY---VSGGQTMSVDNHGLLKSVR 684 (1108)
T ss_dssp SCEEEEEGGGTBCTTSSTTTSBCTTHHHHHHHHHHHHHH---CCSCEEEEECTTSCEEEEE
T ss_pred CCcceeeehhhcCCCCcccCCCCcchhHHHHHHHHHHHh---cCCCcccccCCCCEEEEEe
Confidence 5999999999998642 4568899999999999 6777777777889999999
|
| >2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=6.4e-08 Score=102.32 Aligned_cols=290 Identities=13% Similarity=0.118 Sum_probs=154.7
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCC-CCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHS-FAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~-~~~~gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
+-+.|.+.++.++++|++.|.|=--+-. ...+--...| +.+++ +|. +.++.|++++|++||++.+-+.+..++.+
T Consensus 344 ~e~~i~~~ad~~~~~G~~~~viDDgW~~~r~~~~~~~Gd-w~~d~~kFP--~Glk~lvd~ih~~Glk~GlW~~P~~v~~~ 420 (720)
T 2yfo_A 344 TGDTIVDLAKEAASLGIDMVVMDDGWFGKRNDDNSSLGD-WQVNETKLG--GSLAELITRVHEQGMKFGIWIEPEMINED 420 (720)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECSSSBTTCSSTTSCTTC-CSBCHHHHT--SCHHHHHHHHHHTTCEEEEEECTTEECSS
T ss_pred CHHHHHHHHHHHHHcCCcEEEECcccccCCCcccccCCC-CeeChhhcC--ccHHHHHHHHHHCCCEEEEEecccccCCC
Confidence 6889999999999999999977432211 1010001122 22332 332 24999999999999999999999887776
Q ss_pred CCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCC
Q 015125 119 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 198 (413)
Q Consensus 119 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i 198 (413)
++..... ++|.-. ..++.. . ....+.-||+.||++|+++.+.++.+++++|||+|.+|....+
T Consensus 421 S~l~~~h--------pdw~~~----~~~~~~--~---~~~~~~~LD~t~Pea~~~~~~~l~~l~~~~GIDy~K~D~n~~~ 483 (720)
T 2yfo_A 421 SDLYRAH--------PDWAIR----IQGKKP--V---RSRNQLLLDFSRKEVRDCVFDQICVVLDQGKIDYVKWDMNRSM 483 (720)
T ss_dssp SHHHHHC--------GGGBCC----CTTSCC--C---CBTTBEEBCTTSHHHHHHHHHHHHHHHTTSCCCEEEECCCSCC
T ss_pred CHHHHhC--------cceEEE----CCCcCc--c---cCCceEEECCCCHHHHHHHHHHHHHHHHHcCCCEEEECCCCCc
Confidence 5321111 122111 011100 0 0123445999999999999999999999999999999985433
Q ss_pred c--------HHH---HHHHHHhh---CCCeEE-EcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHH
Q 015125 199 S--------AKY---VKEYIEGA---RPIFSV-GEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGIL 263 (413)
Q Consensus 199 ~--------~~~---~~~~~~~~---~~~~~v-gE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l 263 (413)
. ... +.++.+++ .|.+++ .-.+++ +..++ .+..+... .-.-|.. ..+
T Consensus 484 ~~~~~~~~~~~y~~~~y~l~~~l~~~~p~v~~e~C~~GG-----~r~D~-------g~l~~~~~----~W~sD~~--da~ 545 (720)
T 2yfo_A 484 ADVYAGNLSYDYVLGVYDFMERLCSRYPDLLLEGCSGGG-----GRFDA-------GMLYYSPQ----IWCSDNT--DAI 545 (720)
T ss_dssp CSCCSTTHHHHHHHHHHHHHHHHHHHSTTCEEEECBTBB-----TTCSH-------HHHTTCSE----EECBSCC--CHH
T ss_pred cccCCccHHHHHHHHHHHHHHHHHHhCCCcEEEeccCCC-----Ccccc-------ccceeccc----EecCCCC--CHH
Confidence 1 111 12333433 343322 211211 22211 11222111 0000100 000
Q ss_pred HHHhccchhhhhhhc--CCCCCcccccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccCCch
Q 015125 264 QEAVKGQFWRLRDAQ--GKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWGD 341 (413)
Q Consensus 264 ~~~~~g~~~~~~~~~--~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~gw~~ 341 (413)
... .+.... ..+...++ ..+....||.+.|... -..+...+ +-| |+.+.++--.++.
T Consensus 546 er~------~iq~g~s~~yP~~~~~----~hv~~~P~h~~~r~~~------l~~R~~~a----~~g-~l~~~~dl~~ls~ 604 (720)
T 2yfo_A 546 NRT------RIQYGTSFFYPVSAMG----AHVSAVPNHQTGRVTS------FHTRGVTA----MAG-TFGYELNPALLSD 604 (720)
T ss_dssp HHH------HHHHHHTTTSCGGGEE----CCEECSSCTTTCCCCC------HHHHHHHH----TTT-TCCEESCGGGSCH
T ss_pred HHH------hhhccccccCCHhHhc----cceeccccccccCcCh------HHHHHHHH----Hhc-cCccccChhhCCH
Confidence 000 011110 00001111 1244567887776432 12333322 224 6667777766777
Q ss_pred hHHHHHHHHHHHHHhC-cccCCCCeEEEEe--cCCEEEE--EE--CCEEEEEEcC
Q 015125 342 SIHNQIVKLMDVRRQQ-DIHSRSSIKILEA--QSNLYSA--II--GDKVCMKIGD 389 (413)
Q Consensus 342 ~l~~~i~~L~~lR~~~-p~l~~G~~~~~~~--~~~~~~~--~r--~~~~lv~lnn 389 (413)
+-.+.+++++++.|++ |.+..|.+..+.. +.+..++ .. +++.++++.+
T Consensus 605 e~~~~l~~~i~~~k~~r~li~~G~~~rl~~p~~~~~~~w~~v~~d~~~avv~~~~ 659 (720)
T 2yfo_A 605 EEKQQIREQIKTYKKYETLINEGTYWRLSDPFTDEIAAWMSVSEEQDHALVSVVR 659 (720)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSEEEECSCTTTSSEEEEEEECTTSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhHHHhcCcEEeccCCCCCCceEEEEEeCCCCEEEEEEEe
Confidence 8889999999999875 6777887665543 1233333 33 4566666655
|
| >3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.1e-06 Score=88.88 Aligned_cols=291 Identities=10% Similarity=0.059 Sum_probs=160.4
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
=+-+.|.+.++.++++|++.+.|=--+... ...--...| +.+| .+|- +.|+.||+++|++||++.+=+.+..++.
T Consensus 344 ~tee~il~~ad~~~~~G~e~fviDDGW~~~r~~d~~~~Gd-w~~d~~kFP--~Gl~~lv~~ih~~Glk~glW~~Pe~v~~ 420 (745)
T 3mi6_A 344 FNEAKLMTIVNQAKRLGIEMFVLDDGWFGHRDDDTTSLGD-WFVDQRKFP--DGIEHFSQAVHQQGMKFGLWFEPEMVSV 420 (745)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECTTCBTTCSSTTSCTTC-CSBCTTTCT--THHHHHHHHHHHTTCEEEEEECTTEECS
T ss_pred CCHHHHHHHHHHHHHcCCcEEEECcccccCCCCCcccCCC-ceeChhhcC--ccHHHHHHHHHHCCCEEEEEEcccccCC
Confidence 368899999999999999988874322111 100011223 2333 2333 3599999999999999999999988877
Q ss_pred CCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCC
Q 015125 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARG 197 (413)
Q Consensus 118 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~ 197 (413)
+++..+.. ++|--. ..++ .+. ......-||+.||+||+++.+.++.+++++|||||.+|+-..
T Consensus 421 dS~l~~~h--------Pdw~l~----~~~g--~~~---~~r~~~vLD~tnPevr~~i~~~l~~ll~~~GIDy~K~D~nr~ 483 (745)
T 3mi6_A 421 DSDLYQQH--------PDWLIH----APKS--TPT---PGRHQFVLDMARPEVVDYLFKLMSQMIESANLDYIKWDMNRY 483 (745)
T ss_dssp SSSHHHHC--------GGGBCC----CTTC--CCC---CSSSCEEBCTTCHHHHHHHHHHHHHHHHHHTCSEEEECCCSC
T ss_pred CCHHHHhC--------cceEEE----cCCC--cee---ecCCeEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 66422111 122110 0111 000 012345699999999999999999999999999999998544
Q ss_pred Cc--------H--------HHHH---HHHHhhC---CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCccccc
Q 015125 198 YS--------A--------KYVK---EYIEGAR---PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAF 255 (413)
Q Consensus 198 i~--------~--------~~~~---~~~~~~~---~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 255 (413)
+. + ...+ +++++++ |.++| |.. +-+++..++ .+..|....= ....-
T Consensus 484 i~~~~~~~~~~~~q~~~~~~y~~g~y~ll~~l~~~~P~v~i-e~C---ssGGgR~D~-------g~L~~~~~~W-~SD~t 551 (745)
T 3mi6_A 484 ATEMFSSRLTSDQQLELPHRYILGVYQLYARLTQAYPNVLF-ESC---ASGGGRFDL-------GMMYYAPQAW-TSDDT 551 (745)
T ss_dssp CCSCCCSSSCGGGGGGHHHHHHHHHHHHHHHHHHHCTTCEE-EEC---STTTSSCSH-------HHHHHSSEEE-CCSCC
T ss_pred CcccCCCcCccccccHHHHHHHHHHHHHHHHHHhhCCCeEE-Eec---CCCCCccCh-------hHHhcCCccc-cCCCC
Confidence 32 1 1111 2333332 54444 422 222233322 2233322100 00001
Q ss_pred CccchHHHHHHhccchhhhhhh--cCCCCCcccccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEec
Q 015125 256 DFTTKGILQEAVKGQFWRLRDA--QGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFY 333 (413)
Q Consensus 256 df~~~~~l~~~~~g~~~~~~~~--~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~ 333 (413)
|. +-. ..++.. +..++..++ .-|+-+-||-+.|.... ..+...|+ -|. +-|.
T Consensus 552 Da-----~eR------l~IQ~GtS~~yP~~~mg----aHvs~~Pnh~t~R~~~l------~~R~~vAm----~G~-~G~e 605 (745)
T 3mi6_A 552 DA-----AER------LLIQFGTSYGYPQAMMG----AHVSAVPNDQMGRITSL------KTRGAVAF----FGD-LGYE 605 (745)
T ss_dssp CH-----HHH------HHHHHHHTTTSCGGGEE----EEEECSSCTTTCCCCCH------HHHHHHHT----SSE-EEEE
T ss_pred CH-----HHH------HHHHcccchhhCHHHHh----ccccCCccccCCCcCCH------HHHHHHHh----ccC-ceee
Confidence 10 000 011111 111111111 23556778888876642 23333332 244 4455
Q ss_pred CcccCCchhHHHHHHHHHHHHHhC-cccCCCCeEEEEec----CCEEEEEE----CCEEEEEEc
Q 015125 334 DHFYDWGDSIHNQIVKLMDVRRQQ-DIHSRSSIKILEAQ----SNLYSAII----GDKVCMKIG 388 (413)
Q Consensus 334 G~E~gw~~~l~~~i~~L~~lR~~~-p~l~~G~~~~~~~~----~~~~~~~r----~~~~lv~ln 388 (413)
++--.++.+-.+.+++.+++-|+. |.++.|++-.+... .+..++.. +++.||.+-
T Consensus 606 ldl~~ls~~e~~~~~~~i~~YK~~R~~i~~G~~yrL~~p~~~~~~~~a~~~vs~d~~~avv~~~ 669 (745)
T 3mi6_A 606 LDITKMAPTELDQVKKQVAFYKCYRQLFQFGKFYRIDSPFVEDGNVTSWQVVSDDQKQAIAARY 669 (745)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTHHHHHHSEEEECSCTTSTTCCEEEEEEECTTSSEEEEEEE
T ss_pred eChhhCCHHHHHHHHHHHHHHHHHhHHhccccEEeeCCcccCCCCcEEEEEEcCCCCEEEEEEE
Confidence 565567788899999999999887 77778887665432 34555432 345555333
|
| >2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.8e-06 Score=90.01 Aligned_cols=293 Identities=11% Similarity=0.063 Sum_probs=154.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCC-CCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPA-THSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi-~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
+-+.|.+.++.++++|++.|.|==- +.....+.-...|+ .++| +|.+ .++.|++.+|++||++.+=+.+..++.+
T Consensus 348 ~ee~v~~~ad~~~~~G~~~~viDDGW~~~r~~~~~~~Gd~-~~d~~kFP~--Glk~lv~~ih~~Glk~GlW~~P~~v~~~ 424 (732)
T 2xn2_A 348 NEDKLKTIVDKAKKLGLEMFVLDDGWFGHRDDDNSSLGDW-KVYKKKFPN--GLGHFADYVHEQGLKFGLWFEPEMISYE 424 (732)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECSSSBTTCSSTTSCTTCC-SBCTTTCTT--CHHHHHHHHHHTTCEEEEEECTTEECSS
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCccccCce-eeCchhcCc--cHHHHHHHHHHcCCEEEEEeCccccCCC
Confidence 6888999999999999999976211 11000100011233 4554 3532 4999999999999999999988766554
Q ss_pred CCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCC
Q 015125 119 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 198 (413)
Q Consensus 119 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i 198 (413)
++.... .++|.-. ..+... .+ -....-||+.||++|+++.+.+..+++++|||+|.+|....+
T Consensus 425 S~l~~~--------hpdw~~~----~~g~~~-~~----~~~~~~LD~t~Pev~~~i~~~l~~~~~~~GVD~~K~D~~~~~ 487 (732)
T 2xn2_A 425 SNLYKE--------HPDYLXH----VPGRKP-CP----SRNQYVLELGRKEVRDNIFEQMVKILDSKKIDYIKWDMNRSL 487 (732)
T ss_dssp SHHHHH--------CGGGBCC----CTTSCC-CC----BTTBEEBCTTSHHHHHHHHHHHHHHHTTSCCCEEEECCCCCC
T ss_pred CHHHHh--------Cchheec----CCCCCC-cc----CCceEEEcCCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccc
Confidence 431111 1122110 001000 00 012345899999999999999999889999999999997532
Q ss_pred --------c--------HHHH---HHHHHhhC---C-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCccccc
Q 015125 199 --------S--------AKYV---KEYIEGAR---P-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAF 255 (413)
Q Consensus 199 --------~--------~~~~---~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 255 (413)
+ ..+. .++.++++ | .++..=.|++ +..++ .+..+... .+
T Consensus 488 ~~~~~~~~~~~~~~~~~~~y~~~~y~~~~~l~~~~p~i~~~~C~~Gg-----~r~d~-------g~l~~~~~------~W 549 (732)
T 2xn2_A 488 SDIYESDLPADQQGEAYHRYVLGYYDLLNKLVTRYPDILFEGCSGGG-----GRFDV-------GQAYYTPQ------IW 549 (732)
T ss_dssp CSCCCTTSCGGGGGGHHHHHHHHHHHHHHHHHHHCTTSEEEECBTBB-----TTCSH-------HHHTTCSE------EE
T ss_pred cccCCCCCCccchhhHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcc-----cccCc-------hhhcccce------EE
Confidence 1 1121 12233332 3 3332222321 22211 11111110 00
Q ss_pred CccchHHHHHHhccchhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCc
Q 015125 256 DFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDH 335 (413)
Q Consensus 256 df~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~ 335 (413)
--.-...+... .+...... .+-.......+..+.||-+.|... ...+...+ +=| |+.+.++
T Consensus 550 ~sD~~d~~~r~------~i~~g~s~--~~P~~~~~~~~~~~pn~~~~r~t~------~e~R~~~a----l~~-~l~~~~d 610 (732)
T 2xn2_A 550 ASDNTDAIERL------KIQYGTSL--VYPQSMMTSHVSVSPNEQNGRITP------FNTRGAVA----MWG-DLGYELD 610 (732)
T ss_dssp CBSCCCHHHHH------HHHHHHTT--TSCGGGEEEEEECSSCTTTCCCCC------HHHHHHHH----TTS-EEEEESC
T ss_pred CCCCcCHHHHH------HHhcchhh--cCCcccCCCCEEeeCCCCCCCCCH------HHHHHHHH----HHH-HhhcCCC
Confidence 00000000000 01111100 000000111234566775544321 12333222 223 7888887
Q ss_pred ccCCchhHHHHHHHHHHHHHhC-cccCCCCeEEEEe-cCCEEEEEE----CCEEEEEEcCC
Q 015125 336 FYDWGDSIHNQIVKLMDVRRQQ-DIHSRSSIKILEA-QSNLYSAII----GDKVCMKIGDG 390 (413)
Q Consensus 336 E~gw~~~l~~~i~~L~~lR~~~-p~l~~G~~~~~~~-~~~~~~~~r----~~~~lv~lnn~ 390 (413)
-...+.+..+.+++.+.+++++ |.+..|.+..+.. +.++-++.. +++.++++++.
T Consensus 611 l~~l~~e~~~~l~~~~~l~k~~r~li~~g~~~rl~~~~~~~~~w~~~~~d~~~avv~~~~~ 671 (732)
T 2xn2_A 611 LTKMSDEESDQVVKQVTEYKKIREVTQFGTLYRLKASASNQCAWMMVDSNKNEAVVTVVNV 671 (732)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHHHHSEEEEEECGGGTEEEEEEECTTSCEEEEEEEEC
T ss_pred hhhCCHHHHHHHHHHHHHHHhhhHHHhcCcEEEecCCCCCEeEEEEECCCCCEEEEEEEEc
Confidence 7777888999999999998776 7777887765654 345555433 45777777663
|
| >4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00073 Score=71.61 Aligned_cols=152 Identities=13% Similarity=0.046 Sum_probs=91.1
Q ss_pred CceeEEEeeecCCCC-CccHHHHHhhhhhHHHcCCCEEEcCC-CCCCCCCCCCCcccCCCCC-CCCCCHHHHHHHHHHHH
Q 015125 24 GREILFQGFNWESCK-HDWWRNLERKVPDISKSGFTSVWLPP-ATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMK 100 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~-~g~~~gi~~~L~yLk~lGv~~I~L~P-i~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~h 100 (413)
.+++++ -.|+... +=+-+.|.+.++.+|++|+..+.|== .+....++-=..-| ..++ .+| +..|+.|++.+|
T Consensus 328 ~rPv~~--NsW~a~~~d~~e~~i~~~ad~aa~lG~e~fviDDGWf~~r~~d~~~lGd-W~~d~~kF--P~Glk~Lad~vh 402 (729)
T 4fnq_A 328 ERPILI--NNWEATYFDFNEEKLVNIAKTEAELGIELFVLDDGWFGKRDDDRRSLGD-WIVNRRKL--PNGLDGLAKQVN 402 (729)
T ss_dssp CCCCEE--ECSTTTTTCCCHHHHHHHHHHHHHHTCCEEEECSCCBTTCCSTTSCTTC-CSBCTTTC--TTHHHHHHHHHH
T ss_pred CceeEE--cccccccccCCHHHHHHHHHHHHhcCccEEEEcceeecCCCCCcccCCc-EEEChhhc--CccHHHHHHHHH
Confidence 345544 3453222 23788999999999999999988632 22111111001112 1222 222 246999999999
Q ss_pred HcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHH
Q 015125 101 QHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRW 180 (413)
Q Consensus 101 ~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~ 180 (413)
++||+.-+=+-+--++.++..... .++|--. ..++.. ........||+.+|+|++++.+.+..
T Consensus 403 ~~GmkfGLW~epe~v~~~S~l~~~--------hPdw~~~----~~~~~~-----~~~r~q~~LD~~~P~v~~y~~~~i~~ 465 (729)
T 4fnq_A 403 ELGMQFGLWVEPEMVSPNSELYRK--------HPDWCLH----VPNRPR-----SEGRNQLVLDYSREDVCDYIIETISN 465 (729)
T ss_dssp HTTCEEEEEECTTEECSSSHHHHH--------CGGGBCC----CTTSCC-----CCBTTBEEBCTTSHHHHHHHHHHHHH
T ss_pred HCCCEEEEEeeccccCCCcHHHHh--------Cchheec----cCccCC-----ccCCccccccCCChhHHHHHHHHHHH
Confidence 999999887655444443321111 1122111 000000 00123456899999999999999999
Q ss_pred HHhhcCCCeEeecccCC
Q 015125 181 LRNTVGFQDFRFDFARG 197 (413)
Q Consensus 181 w~~~~gvDGfR~D~a~~ 197 (413)
.+++.|||.+.+|....
T Consensus 466 ll~~~GidYiK~D~n~~ 482 (729)
T 4fnq_A 466 VLASAPITYVKWDMNRH 482 (729)
T ss_dssp HHTTTTCCEEEEECCCC
T ss_pred HHHHCCCCEEEEcCCCC
Confidence 99999999999997544
|
| >3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str} | Back alignment and structure |
|---|
Probab=97.68 E-value=4.5e-05 Score=78.80 Aligned_cols=91 Identities=19% Similarity=0.180 Sum_probs=67.5
Q ss_pred HHHHhcCCCeeEEecCcccC--------------Cc-------------hhH-HHHHHHHHHHHHhCccc-CCCCeEEEE
Q 015125 319 YAYILMHPGIPSVFYDHFYD--------------WG-------------DSI-HNQIVKLMDVRRQQDIH-SRSSIKILE 369 (413)
Q Consensus 319 ~a~ll~~pGiP~Iy~G~E~g--------------w~-------------~~l-~~~i~~L~~lR~~~p~l-~~G~~~~~~ 369 (413)
..+-+|+||||=||+|.|.- +. +.+ ...+++++++|+++|.+ ..|++.-+.
T Consensus 568 ~ll~lt~PGvPD~YQG~E~wd~sLVDPDNRRpvd~~~~~~~l~~~~~~~g~~Kl~~~~~~L~lR~~~p~~F~~g~Y~pl~ 647 (704)
T 3hje_A 568 VALKITSPGVADFYQGLENFRYLLTDPDNRRPVVFSELPKRYEEGLFNNGRIKAYVTKVLLNLRKSMKDFFINSEYKPLK 647 (704)
T ss_dssp HHHHHHSSSEEEEETTTTSCCCCCSTTGGGSCCCCCCCCCSCCGGGTTTSTHHHHHHHHHHHHHHHTTTHHHHSCEEECC
T ss_pred HHHHhcCCCCCccccCcccccccCcCCCCCCCCChHHHHhhhccccCCCchHHHHHHHHHHHHHHhChhhhccCCeEEEE
Confidence 34456899999999999951 11 122 33788999999999886 689999998
Q ss_pred ecCCEEEEEECCEEEEEEcCCCCC---CCCCCcEEeeeCCceE
Q 015125 370 AQSNLYSAIIGDKVCMKIGDGSWC---PAGKEWTLATSGHKYA 409 (413)
Q Consensus 370 ~~~~~~~~~r~~~~lv~lnn~~~~---~~~~~~~~~~s~~~~~ 409 (413)
..+.+++|.|++.++|++-.-... +..+.|+++|+|..++
T Consensus 648 ~~~h~~af~R~~~~~~v~~r~~~~l~l~~~g~w~d~ltg~~~~ 690 (704)
T 3hje_A 648 LQKGLCGFMRGDKVLVIVKTLNRDYDIEIDGEYTDVITDETVR 690 (704)
T ss_dssp CCTTEEEEEETTTEEEEEESSSSCEEEEEEEEEEETTTTEEEE
T ss_pred ecceEEEEecCCcEEEEEeccccceecCCCCeeEEeecCceec
Confidence 888999999977777777553221 1236899999987654
|
| >1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00018 Score=69.05 Aligned_cols=129 Identities=17% Similarity=0.155 Sum_probs=81.0
Q ss_pred CCceeEEEeee--cCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCccc---CCCCCCC--------CCCH
Q 015125 23 NGREILFQGFN--WESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQN---LYSLNSS--------YGSE 89 (413)
Q Consensus 23 ~~~~~i~~~f~--~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d---~~~id~~--------~Gt~ 89 (413)
+|+.+.+++++ |... .++-..+.+.|+.||++|+|+|-+....+.. +.|.+ ++.+.+. -...
T Consensus 15 nG~~~~~~G~n~~~~~~-~~~~~~~~~~l~~~k~~G~N~vR~~~~~~~~----~~P~~~~~~~~~~~~~~~~~~~~~~~~ 89 (344)
T 1qnr_A 15 DGKVGYFAGTNCYWCSF-LTNHADVDSTFSHISSSGLKVVRVWGFNDVN----TQPSPGQIWFQKLSATGSTINTGADGL 89 (344)
T ss_dssp TTEESCEEEEECGGGGG-CCCHHHHHHHHHHHHHTTCCEEECCCCCEES----SCCSTTCCCSEECCTTCCEECCSTTTT
T ss_pred CCEEEEEEEEecccccc-cCCHHHHHHHHHHHHHcCCCEEEEccccCCC----CCCCCCceeeeecCCCCcccccCHHHH
Confidence 67788899987 5421 2367889999999999999999984222110 00100 1222211 2347
Q ss_pred HHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHH
Q 015125 90 HLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHF 169 (413)
Q Consensus 90 ~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~ 169 (413)
+.|.++++.|+++||+||+|++-++... +....|.. |. ...++..+.+|.
T Consensus 90 ~~ld~~i~~a~~~Gi~vild~~~~w~~~---g~~~~~~~-------~~--------------------g~~~~~~~~~~~ 139 (344)
T 1qnr_A 90 QTLDYVVQSAEQHNLKLIIPFVNNWSDY---GGINAYVN-------AF--------------------GGNATTWYTNTA 139 (344)
T ss_dssp HHHHHHHHHHHHHTCEEEEESCBSSSTT---SHHHHHHH-------HH--------------------CSCTTGGGGCHH
T ss_pred HHHHHHHHHHHHCCCEEEEEeccCcccc---CCHHHHHH-------Hh--------------------CCChhhhcCCHH
Confidence 8899999999999999999987443110 00001100 00 001234567889
Q ss_pred HHHHHHHHHHHHHhhcC
Q 015125 170 VRKDIIAWLRWLRNTVG 186 (413)
Q Consensus 170 vr~~l~~~~~~w~~~~g 186 (413)
+++.+.+.++.+++.++
T Consensus 140 ~~~~~~~~~~~~~~r~~ 156 (344)
T 1qnr_A 140 AQTQYRKYVQAVVSRYA 156 (344)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999887765
|
| >1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13 | Back alignment and structure |
|---|
Probab=97.54 E-value=6.2e-05 Score=77.30 Aligned_cols=130 Identities=12% Similarity=0.173 Sum_probs=83.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCc--ccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLP--QNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~--~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
+-+.|.+.++.++++|++.|.| +.||.. .|+..-..+|-. ++.||+++|++||++.+=+-+.-++.+
T Consensus 210 te~~v~~~ad~~~~~G~~~~~I--------DdgW~~~~Gdw~~d~~kFP~---lk~lvd~lh~~Glk~Giw~~P~~v~~~ 278 (564)
T 1zy9_A 210 TWEETLKNLKLAKNFPFEVFQI--------DDAYEKDIGDWLVTRGDFPS---VEEMAKVIAENGFIPGIWTAPFSVSET 278 (564)
T ss_dssp CHHHHHHHHHHGGGTTCSEEEE--------CTTSEEETTEEEEECTTCCC---HHHHHHHHHHTTCEEEEEECTTEEETT
T ss_pred CHHHHHHHHHHHHhcCCcEEEE--------CcccccccCCcccCcccCCC---HHHHHHHHHHCCCEEEEEeCCCccCCC
Confidence 6789999999999999999997 333321 232111245654 999999999999999998766543333
Q ss_pred CCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccC
Q 015125 119 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (413)
Q Consensus 119 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~ 196 (413)
+. .|.. .++|.- .. ++... ...+.| ....-+|+.+|++|+++.+.++.+ .+.|||||.+|...
T Consensus 279 S~----ly~~----~pdw~v----~~-~G~~~-~~~~~W~~~~~~lD~t~P~a~~~~~~~~~~~-~~~GVD~iK~D~~~ 342 (564)
T 1zy9_A 279 SD----VFNE----HPDWVV----KE-NGEPK-MAYRNWNKKIYALDLSKDEVLNWLFDLFSSL-RKMGYRYFKIDFLF 342 (564)
T ss_dssp CH----HHHH----CGGGBC----EE-TTEEC-EEEEETTEEEEEBCTTCHHHHHHHHHHHHHH-HHTTCCEEEECCGG
T ss_pred Ch----hHHh----CCCeEE----ec-CCeee-eeecccCCceeecCCCCHHHHHHHHHHHHHH-HhcCCCEEEEcCCC
Confidence 21 1110 011110 00 00000 000001 113458999999999999999999 69999999999864
|
| >1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase, alpha-amylase FAMI acarbose, transferase; HET: ACR; 1.90A {Thermus aquaticus} SCOP: c.1.8.1 PDB: 1cwy_A* 1fp8_A 1fp9_A 2owc_A* 2oww_A* 2owx_A* 2x1i_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00073 Score=67.98 Aligned_cols=62 Identities=8% Similarity=-0.035 Sum_probs=45.9
Q ss_pred CCceeEEEeeecC-CCCCccHHHHH-hhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCCC
Q 015125 23 NGREILFQGFNWE-SCKHDWWRNLE-RKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNS 84 (413)
Q Consensus 23 ~~~~~i~~~f~~~-~~~~g~~~gi~-~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id~ 84 (413)
...|+++|++-=. ..+=|||-... +-++.+++.|.+.++|+|+.+.. ++..|++.+-+.++|
T Consensus 5 R~~Gill~l~SL~s~~GIGdfgd~a~~~vd~la~~G~~~~qilPL~pt~~~~SPY~~~S~fa~Np 69 (500)
T 1esw_A 5 RAFGLLLHPTSLPGPYGVGVLGREARDFLRFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGNP 69 (500)
T ss_dssp SEEEEECCGGGSCCSSSSCCSSHHHHHHHHHHHHTTCCEEECCCCSCBCTTCCTTSBSCSSCCCG
T ss_pred CceEEEecchhcCCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccCh
Confidence 4457888887432 22338998865 99999999999999999999754 345788776666653
|
| >3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31, alpha-glucosidase membrane, disease mutation, disulfide bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL; 2.15A {Homo sapiens} PDB: 3lpo_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0011 Score=71.36 Aligned_cols=159 Identities=11% Similarity=0.080 Sum_probs=97.5
Q ss_pred cccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHH
Q 015125 14 QTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEH 90 (413)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~ 90 (413)
.+.+||.++=| |++.-..-.+-+.+.+-++.+++.|| ++|||=-=+- .+| .| +..|+ +|-
T Consensus 311 ~p~lpP~WalG-------~~qsr~~Y~s~~ev~~vv~~~r~~~IP~Dvi~lDidy~----~~~--~d-Ft~D~~~FP--- 373 (898)
T 3lpp_A 311 LPAMPAYWNLG-------FQLSRWNYKSLDVVKEVVRRNREAGIPFDTQVTDIDYM----EDK--KD-FTYDQVAFN--- 373 (898)
T ss_dssp CCCCCCGGGGS-------CEECCSCCCSHHHHHHHHHHHHHTTCCCCEEEECGGGS----STT--CT-TCCCTTTTT---
T ss_pred CCCcCcchhcC-------cceecccCCCHHHHHHHHHHHHHcCCCceeeEeccccc----cCC--Cc-ceEChhhCC---
Confidence 34567887654 44443334578999999999999999 9999732110 111 23 45553 554
Q ss_pred HHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCC-CCCCCCCCCeeccCCCCCCCcCCCCCC-CCCcCCCCCH
Q 015125 91 LLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG-IPLSWDEHAVTSCTGGLGNGSTGDNFH-GVPNIDHTQH 168 (413)
Q Consensus 91 ~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~~~ 168 (413)
+.++|++++|++|+|+++=+-+. ++.+++.....|..|.. ...++. ....++. .+..+..|. ...-+|+.||
T Consensus 374 dp~~mv~~Lh~~G~k~vl~idP~-I~~~~~~~~~~Y~~y~eg~~~g~f----vk~~~G~-~~~~g~~WpG~~~~~Dftnp 447 (898)
T 3lpp_A 374 GLPQFVQDLHDHGQKYVIILDPA-ISIGRRANGTTYATYERGNTQHVW----INESDGS-TPIIGEVWPGLTVYPDFTNP 447 (898)
T ss_dssp THHHHHHHHHHTTCEEEEEECSC-EECSCCTTSCCCHHHHHHHHHTCB----CBCTTSS-SBCCEEETTEEEECBCTTSH
T ss_pred CHHHHHHHHHHCCCEEEEEeCCc-cccCCcccccccHHHHHHHhCCcE----EECCCCC-ceeEEEecCCCccccCCCCH
Confidence 78899999999999999977664 55544321223433321 000000 0001110 111111121 1234688999
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 169 FVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 169 ~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
++|++..+.++.+.++.||||+=+|+-
T Consensus 448 ~a~~ww~~~~~~~~~~~giDg~W~Dmn 474 (898)
T 3lpp_A 448 NCIDWWANECSIFHQEVQYDGLWIDMN 474 (898)
T ss_dssp HHHHHHHHHHHHHHHHSCCSEEEECST
T ss_pred HHHHHHHHHHHHHHhcCCccEEEEeCC
Confidence 999999999999888899999999974
|
| >3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif, glycoside H family 66, hydrolase; 1.60A {Streptococcus mutans} PDB: 3vmo_A* 3vmp_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0064 Score=62.10 Aligned_cols=145 Identities=14% Similarity=0.012 Sum_probs=80.9
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCC-CCCCCC--Cc-ccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC-C
Q 015125 45 LERKVPDISKSGFTSVWLPPATHS-FAPEGY--LP-QNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT-T 119 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~-~~~~gY--~~-~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~-~ 119 (413)
-.+.|+.|+++-||+|+.==..-. ..+.+- .+ ..+-.+..+-=..+-+|.+|++||+.||+-|.=-.+.-...+ .
T Consensus 142 ~~~~i~~L~~yHIN~~QFYDW~yrHh~P~~~~~~~~~~W~D~~~R~i~~~tVk~yI~~ah~~gm~aM~YnmiYaA~~~~~ 221 (643)
T 3vmn_A 142 YYRELEQMKNMNINSYFFYDVYKSATNPFPNVPKFDQSWNWWSHSQVETDAVKALVNRVHQTGAVAMLYNMILAQNANET 221 (643)
T ss_dssp HHHHHHHHHHTTCCEEEETTCCSBTTBCSCSSSEEECTTCTTTCCEEEHHHHHHHHHHHHHTTCEEEEEEESSEEETTSC
T ss_pred hHHHHHHHHhcCcCeEEeeeecccccCcCCCCCccccccccccCCEehHHHHHHHHHHHHHcCchhhhhHhhhccccCcc
Confidence 467889999999999997322110 000000 00 112233333344788999999999999999975444433332 1
Q ss_pred CCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccC
Q 015125 120 QGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (413)
Q Consensus 120 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~ 196 (413)
.+....+.-|.....++... +....+.....+.+-=+|..+|+.|+||.+.+...++.+|||||.+|...
T Consensus 222 ~g~~~~~~~y~~~~~~~g~~-------~~~~~~~~~g~p~~~~~nP~np~wq~yI~~~~~dvv~~~dfDG~HiD~lG 291 (643)
T 3vmn_A 222 AVLPDTEYIYNYETGGYGQN-------GQVMTYSIDDKPLQYYYNPLSKSWQNYISNAMAQAMKNGGFDGWQGDTIG 291 (643)
T ss_dssp CSSCGGGBCEESSSBTTBST-------TSBCEEEETTEEEEEEBCTTCHHHHHHHHHHHHHHHHHHTCCEEEEECSC
T ss_pred cCCcchhhhhcccccccccc-------CccceeccCCCceEEEECCCCHHHHHHHHHHHHHHHHhCCCceEeecccC
Confidence 11111111111100011100 00000000001112336889999999999999999999999999999753
|
| >3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31, cell membrane, disulfide bond, glycoprotein, glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A {Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A* 3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0035 Score=67.31 Aligned_cols=157 Identities=11% Similarity=0.132 Sum_probs=93.8
Q ss_pred cccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHH
Q 015125 14 QTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEH 90 (413)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~ 90 (413)
.+.+||.++=| |++.-..-.+-+.+.+-++.+++.|| ++||+=-=+- .++ .| +..|+ +|-
T Consensus 283 ~p~lpP~WalG-------~~qsr~~Y~s~~ev~~vv~~~r~~~IP~Dvi~lDidy~----~~~--~d-Ft~D~~~FP--- 345 (875)
T 3l4y_A 283 RPALPSYWALG-------FHLSRYEYGTLDNMREVVERNRAAQLPYDVQHADIDYM----DER--RD-FTYDSVDFK--- 345 (875)
T ss_dssp CCCCCCGGGGS-------EEECCSCCCSHHHHHHHHHHHHHTTCCCCEEEECGGGS----BTT--BT-TCCCTTTTT---
T ss_pred CCCCCCccccc-------cceeccCCCCHHHHHHHHHHHHhcCCCCceEEEccchh----cCC--Cc-eeeChhhCC---
Confidence 35567888655 44333333468899999999999999 9999632110 111 23 55664 565
Q ss_pred HHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCC--CCCCCCCCCeeccCCCCCCCcCCCCCC-CCCcCCCCC
Q 015125 91 LLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG--IPLSWDEHAVTSCTGGLGNGSTGDNFH-GVPNIDHTQ 167 (413)
Q Consensus 91 ~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~~ 167 (413)
+.++||+++|++|+|+++=+-+. ++.++. ....|..|.. ....|- ...++. .+..+..|. ...-+|+.|
T Consensus 346 dp~~mv~~Lh~~G~k~v~~idP~-I~~~s~-~~~~y~~y~eg~~~g~fv-----k~~dG~-~~~~g~~WpG~~~~pDFtn 417 (875)
T 3l4y_A 346 GFPEFVNELHNNGQKLVIIVDPA-ISNNSS-SSKPYGPYDRGSDMKIWV-----NSSDGV-TPLIGEVWPGQTVFPDYTN 417 (875)
T ss_dssp THHHHHHHHHHTTCEEEEEECSC-EECCCC-SSSCCHHHHHHHHHTCBC-----BCTTSS-SBCCEEETTEEEECBCTTS
T ss_pred CHHHHHHHHHHCCCEEEEEeCCc-cccCcc-cccccHHHHHHHHCCeEE-----ECCCCC-cceEEEecCCCccCcCCCC
Confidence 48899999999999999865543 443321 1112322211 000010 001110 000111121 122368899
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 168 HFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 168 ~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
|++|++..+.++.+..+.||||+=+|+-
T Consensus 418 P~a~~WW~~~~k~~~~~~gidg~W~Dmn 445 (875)
T 3l4y_A 418 PNCAVWWTKEFELFHNQVEFDGIWIDMN 445 (875)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSEEEECST
T ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEcCC
Confidence 9999999999999888899999999974
|
| >2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0068 Score=63.79 Aligned_cols=153 Identities=12% Similarity=0.071 Sum_probs=94.4
Q ss_pred ccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHH
Q 015125 15 TDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHL 91 (413)
Q Consensus 15 ~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~ 91 (413)
+.++|.++-| |++....-.+-+.+.+.++.+++.|| ++|||=-=+- .+|. | +..|+ +|-.
T Consensus 169 p~~pP~WalG-------~~qsr~~y~~~~ev~~v~~~~~~~~IP~dvi~lD~~y~----~~~~--d-ft~d~~~FPd--- 231 (693)
T 2g3m_A 169 PFLPPMWAFG-------YMISRYSYYPQDKVVELVDIMQKEGFRVAGVFLDIHYM----DSYK--L-FTWHPYRFPE--- 231 (693)
T ss_dssp CCCCCGGGGS-------EEEEETTCCSHHHHHHHHHHHHHTTCCEEEEEECGGGS----BTTB--T-TCCCTTTCSC---
T ss_pred CCCCcccccC-------ccccCCcCCCHHHHHHHHHHHHHcCCCcceEEEeccee----cCCc--c-ceEChhhCCC---
Confidence 4557777654 33322233467899999999999999 8999853111 1232 3 45553 5554
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHHH
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFV 170 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~v 170 (413)
.++||+++|++|+|+++=+-+ +++.+. .|..|..... +. ....++ .......| ....-+|+.||++
T Consensus 232 p~~mv~~Lh~~G~k~~l~i~P-~I~~~~-----~y~~y~e~~~-~f----vk~~~G--~~~~g~~W~g~~~~~Dftnp~a 298 (693)
T 2g3m_A 232 PKKLIDELHKRNVKLITIVDH-GIRVDQ-----NYSPFLSGMG-KF----CEIESG--ELFVGKMWPGTTVYPDFFREDT 298 (693)
T ss_dssp HHHHHHHHHHTTCEEEEEECS-CEECCT-----TCHHHHHHTT-SB----CEETTS--SBCEEEETTEEEECBCTTSHHH
T ss_pred HHHHHHHHHHCCCEEEEEecC-cccCCC-----CcHHHHHHHh-he----EECCCC--CEEEEEeCCCCeeeeCCCCHHH
Confidence 689999999999999997766 555431 2322221000 10 000111 00000011 1223478899999
Q ss_pred HHHHHHHHHHHHhhcCCCeEeecccCCC
Q 015125 171 RKDIIAWLRWLRNTVGFQDFRFDFARGY 198 (413)
Q Consensus 171 r~~l~~~~~~w~~~~gvDGfR~D~a~~i 198 (413)
|++..+.++.++ +.|||||=+|+....
T Consensus 299 ~~ww~~~~~~l~-~~GiDg~w~DmnEp~ 325 (693)
T 2g3m_A 299 REWWAGLISEWL-SQGVDGIWLDMNEPT 325 (693)
T ss_dssp HHHHHHHHHHHH-TTTCCEEEECSTTTC
T ss_pred HHHHHHHHHHHH-hcCCcEEEEecCCcc
Confidence 999999999988 789999999997543
|
| >2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase; HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1 b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A* 1we5_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.11 Score=55.33 Aligned_cols=136 Identities=10% Similarity=0.082 Sum_probs=82.4
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 41 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+-+.+.+-++.+++.|| +.|||=--+-. +|.-.| +..|+ +|-. .++||+++|++|+++++=+-+ +++.
T Consensus 282 ~e~~v~~v~~~~r~~~IP~dvi~lD~~w~~----~~~w~d-ft~d~~~FPd---p~~mv~~Lh~~G~k~~l~i~P-~I~~ 352 (773)
T 2f2h_A 282 DEATVNSFIDGMAERNLPLHVFHFDCFWMK----AFQWCD-FEWDPLTFPD---PEGMIRRLKAKGLKICVWINP-YIGQ 352 (773)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEECGGGBC----TTCCSS-CCBCTTTCSC---HHHHHHHHHHTTCEEEEEECS-EECT
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEECccccc----cccccc-ceEChhhCCC---HHHHHHHHHHCCCEEEEEecC-CcCC
Confidence 35678888888999887 88887432111 121124 45553 5554 479999999999999987655 4554
Q ss_pred CCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccC
Q 015125 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (413)
Q Consensus 118 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~ 196 (413)
+++. |..-.. ..|. ....++ .++....| ....-+|+.||++|++..+.++.++ +.|||||-.|+..
T Consensus 353 ~s~~----y~e~~~--~g~~----vk~~~G--~~~~~~~w~g~~~~~DftnP~a~~ww~~~~~~l~-d~Gvd~~w~D~~e 419 (773)
T 2f2h_A 353 KSPV----FKELQE--KGYL----LKRPDG--SLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLV-AMGVDCFKTDFGE 419 (773)
T ss_dssp TSTT----HHHHHH--HTCB----CBCTTS--SBCCBSSSSTTBEEBCTTSHHHHHHHHHHHHHHH-HTTCCEEEECCCC
T ss_pred CCHH----HHHHHH--CCce----eECCCC--CeeeeeecCCCceeeCCCCHHHHHHHHHHHHHHH-hcCCCEEEccCCC
Confidence 4321 110000 0000 000000 00111111 2234579999999999999999988 8999999999865
Q ss_pred CC
Q 015125 197 GY 198 (413)
Q Consensus 197 ~i 198 (413)
.+
T Consensus 420 ~~ 421 (773)
T 2f2h_A 420 RI 421 (773)
T ss_dssp CC
T ss_pred CC
Confidence 44
|
| >2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0067 Score=58.36 Aligned_cols=62 Identities=15% Similarity=0.090 Sum_probs=45.2
Q ss_pred CCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 37 CKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSY-GSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 37 ~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~-Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
.++.+.+...+-|+-.+++|++.|+.+=. .++..- -..+.|++|++.||+.||+||+|+-+.
T Consensus 11 ~~~~~~~~~~~yi~~a~~~Gf~~IFTSL~---------------~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~ 73 (372)
T 2p0o_A 11 LGEEITNDTIIYIKKMKALGFDGIFTSLH---------------IPEDDTSLYRQRLTDLGAIAKAEKMKIMVDISGE 73 (372)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCEEEEEEC---------------CC-----CHHHHHHHHHHHHHHHTCEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEccCC---------------ccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 44556777777888888999999985421 222111 136889999999999999999999655
|
| >4ba0_A Alpha-glucosidase, putative, ADG31B; hydrolase; HET: 5GF PGE ARG; 1.85A {Cellvibrio japonicus} PDB: 4b9z_A* 4b9y_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.037 Score=59.19 Aligned_cols=155 Identities=10% Similarity=-0.025 Sum_probs=90.7
Q ss_pred ccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCC-CCCCcccCCCCC-CCCCCHH
Q 015125 15 TDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGF--TSVWLPPATHSFAP-EGYLPQNLYSLN-SSYGSEH 90 (413)
Q Consensus 15 ~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~-~gY~~~d~~~id-~~~Gt~~ 90 (413)
+.+||.++-| |+++-..=.+-+.+.+.++.+++.|| ++|||=-=+-...+ .++ .| +..| .+|-.
T Consensus 256 ~~lpP~WalG-------~~~sr~~Y~s~~ev~~vv~~~r~~~IP~Dvi~lD~dw~g~d~~~~~--gd-ftwd~~~FPd-- 323 (817)
T 4ba0_A 256 QPLPPRWALG-------SFASRFGYRSEAETRATVQKYKTEDFPLDTIVLDLYWFGKDIKGHM--GN-LDWDKENFPT-- 323 (817)
T ss_dssp CCCCCGGGGS-------BEECCBCCCSHHHHHHHHHHHHHHTCCCCEEEECGGGSCSSSSSCT--TC-CSCCTTTCSC--
T ss_pred CCCCCccccC-------cceecccCCCHHHHHHHHHHHHHhCCCCcEEEEcccccCCcccccc--Cc-cccccccCCC--
Confidence 4557777665 22221111267889999999999998 99998631111000 011 12 4555 35655
Q ss_pred HHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHH
Q 015125 91 LLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHF 169 (413)
Q Consensus 91 ~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~ 169 (413)
.++|++++|++|+|+++=+-+ |+..+++. |..... .++- ....+ +.+.....| ....-+|+.||+
T Consensus 324 -p~~mv~~Lh~~G~k~vl~i~P-~I~~~s~~----y~e~~~--~g~~----vk~~~--G~~~~~~~w~G~~~~~DftnP~ 389 (817)
T 4ba0_A 324 -PLDMMADFKQQGVKTVLITEP-FVLTSSKR----WDDAVK--AKAL----AKDPQ--GQPKAFELYFGNGGIIDVFSKE 389 (817)
T ss_dssp -HHHHHHHHHHTTCEEEEEECS-EEETTSTT----HHHHHH--TTCB----CBCTT--SSBCCEEETTEEEEEBCTTSHH
T ss_pred -HHHHHHHHHHCCCEEEEEeCC-CccCCcHH----HHHHHh--CCEE----EECCC--CCeEEEEecCCCceeecCCCHH
Confidence 479999999999999997655 44443321 111000 0000 00001 111100001 112337889999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEeecccC
Q 015125 170 VRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (413)
Q Consensus 170 vr~~l~~~~~~w~~~~gvDGfR~D~a~ 196 (413)
+|++..+.++.+. +.|||||=+|+..
T Consensus 390 ar~ww~~~~~~l~-~~GvDg~W~DmnE 415 (817)
T 4ba0_A 390 GSRWFSSIYKDLS-KQGVAGWWGDLGE 415 (817)
T ss_dssp HHHHHHHHHHHHH-HHTCCEEEECCTT
T ss_pred HHHHHHHHHHHHH-hCCCcEEEecCCC
Confidence 9999999999887 8999999999864
|
| >1x1n_A 4-alpha-glucanotransferase; disproportionating enzyme, amylomaltase, D-enzyme; 1.80A {Solanum tuberosum} SCOP: c.1.8.1 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.031 Score=56.44 Aligned_cols=64 Identities=13% Similarity=-0.025 Sum_probs=46.3
Q ss_pred cccCCceeEEEeeecC-CCCCccHHHHH-hhhhhHHHcCCCEEEcCCCCCCC-----CCCCCCcccCCCCC
Q 015125 20 VIRNGREILFQGFNWE-SCKHDWWRNLE-RKVPDISKSGFTSVWLPPATHSF-----APEGYLPQNLYSLN 83 (413)
Q Consensus 20 ~~~~~~~~i~~~f~~~-~~~~g~~~gi~-~~L~yLk~lGv~~I~L~Pi~~~~-----~~~gY~~~d~~~id 83 (413)
..+...|+++|+|-=. ..+=|||-... +-++.+++.|.+.++|+|+.+.. .+..|++.+-+.++
T Consensus 23 ~~~R~~Gill~l~SL~s~~GIGdfgd~a~~fvd~la~~G~~~~qilPL~~t~~~~p~~~SPY~~~S~fa~N 93 (524)
T 1x1n_A 23 NDRRRAGILLHPTSFPGPYGIGDLGPQAFKFLDWLHLAGCSLWQVLPLVPPGKRGNEDGSPYSGQDANCGN 93 (524)
T ss_dssp GGCCEEEEECCGGGSCCTTSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCBCCSSSCTTCTTSBSCSSSCC
T ss_pred CCCCceEEEecccccCCCCCCccHHHHHHHHHHHHHHcCCCEEeecCCCCCCCCCCCCCCCcCcccccccC
Confidence 3344568999998532 23338998865 99999999999999999999864 24567765544443
|
| >2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.021 Score=53.31 Aligned_cols=72 Identities=14% Similarity=0.273 Sum_probs=50.1
Q ss_pred CCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015125 23 NGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~ 102 (413)
.|+++.+++.++...-...+ ..+.++.||++|+|+|=| |+... ..|. - ...+.++++|+.|.++
T Consensus 13 ~G~~~~lrGvn~~~~w~~~~--~~~~~~~i~~~G~N~VRi-~~~~~---~~~~------~----~~~~~ld~~v~~a~~~ 76 (294)
T 2whl_A 13 NGQPFVMRGINHGHAWYKDT--ASTAIPAIAEQGANTIRI-VLSDG---GQWE------K----DDIDTIREVIELAEQN 76 (294)
T ss_dssp TSCBCCCEEEEECGGGCGGG--HHHHHHHHHHTTCSEEEE-EECCS---SSSC------C----CCHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEeecccccCCcc--hHHHHHHHHHcCCCEEEE-EecCC---CccC------c----cHHHHHHHHHHHHHHC
Confidence 56667777776521000112 567899999999999988 55421 0121 1 3588999999999999
Q ss_pred CCEEEEEE
Q 015125 103 KVRAMADI 110 (413)
Q Consensus 103 Gi~VilD~ 110 (413)
||+||+|+
T Consensus 77 Gi~Vild~ 84 (294)
T 2whl_A 77 KMVAVVEV 84 (294)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 99999997
|
| >3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.027 Score=52.65 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=54.6
Q ss_pred CCceeEEEeeecC---CCCC----c---cHHHHHhhhhhHHHcCCCEEEc--CCCCCCC---CCCCCCcccCCCCCCCCC
Q 015125 23 NGREILFQGFNWE---SCKH----D---WWRNLERKVPDISKSGFTSVWL--PPATHSF---APEGYLPQNLYSLNSSYG 87 (413)
Q Consensus 23 ~~~~~i~~~f~~~---~~~~----g---~~~gi~~~L~yLk~lGv~~I~L--~Pi~~~~---~~~gY~~~d~~~id~~~G 87 (413)
.|+++.+++.+|- +..+ + +.+.+.+.|+.+|++|+|+|=+ ....... ...++... ....-.
T Consensus 12 nG~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~G~N~vRv~~~~~~~~~~~~~~~~~~~~----~~~~~~ 87 (351)
T 3vup_A 12 NGQRVFLSGGNLPWMSYAYDFGDGQWQRNKNRIEPEFKKLHDAGGNSMRLWIHIQGETTPAFNDQGFVTG----PDKQGT 87 (351)
T ss_dssp TTEEBCEEEEECCCSSTTCSSSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSCEEE----SCSSSC
T ss_pred CCEEEEEEEEecCccccccccCcccCcCCHHHHHHHHHHHHHcCCcEEEECcccccccCccccccccccc----ccccHH
Confidence 6788999999862 1111 1 5567888899999999999865 1111110 11111111 001112
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
-.+.+.++++.|.++||+||+|+.
T Consensus 88 ~~~~~d~~~~~a~~~Gi~vil~~~ 111 (351)
T 3vup_A 88 MLDDMKDLLDTAKKYNILVFPCLW 111 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEec
Confidence 367799999999999999999983
|
| >1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.015 Score=56.16 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=43.5
Q ss_pred CCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 37 CKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 37 ~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
+++.+++...+-|+-.+++|++.|+.+=. .++. .=-..+.|++|++.||+.||+||+|+-+.
T Consensus 35 p~~~~~~~~~~Yi~~a~~~Gf~~IFTSL~---------------~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DVsp~ 97 (385)
T 1x7f_A 35 PEHSTKEKDMAYISAAARHGFSRIFTCLL---------------SVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPA 97 (385)
T ss_dssp GGGSCHHHHHHHHHHHHTTTEEEEEEEEC---------------CC--------HHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEccCC---------------ccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 44456777777777778899999985431 1111 11236889999999999999999999554
|
| >3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A 3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A* 3poc_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.091 Score=54.89 Aligned_cols=153 Identities=12% Similarity=0.170 Sum_probs=88.4
Q ss_pred ccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHH
Q 015125 15 TDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHL 91 (413)
Q Consensus 15 ~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~ 91 (413)
+.+||.++=| +|.=-|+. .+-+.+.+.++.+++.|| ++|||-.=+-. +| .| +..|+ +|- +
T Consensus 157 ~~lpP~walG----~~qsr~~Y---~~~~~v~~v~~~~~~~~IP~dvi~lD~dy~~----~~--~~-ft~d~~~FP---d 219 (666)
T 3nsx_A 157 SYIPPKFAFG----FGQSRWGY---TTKEDFRAVAKGYRENHIPIDMIYMDIDYMQ----DF--KD-FTVNEKNFP---D 219 (666)
T ss_dssp CCCCCGGGGS----EEEEETTC---CSHHHHHHHHHHHHHTTCCCCEEEECGGGSS----TT--CT-TCCCTTTCT---T
T ss_pred ccCCcccccc----cccccccc---CCHHHHHHHHHHHHhcCCCcceEEEecHHHH----hh--cc-cccChhhCC---C
Confidence 4557777654 34333332 256788888888998887 88988532211 22 23 56664 565 5
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCC-CCCCCCCCeeccCCCCCCCcCCCCCC-CCCcCCCCCHH
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGI-PLSWDEHAVTSCTGGLGNGSTGDNFH-GVPNIDHTQHF 169 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~~~~ 169 (413)
.++||+++|++|+|+|+=+-+. +..+ ..|..|... ..++ +....+ +.+.....|. ...-+|+.||+
T Consensus 220 p~~mv~~Lh~~G~k~v~~idP~-i~~~-----~~~~~y~e~~~~g~----fvk~~~--G~~~~g~~WpG~~~~pDftnp~ 287 (666)
T 3nsx_A 220 FPEFVKEMKDQELRLIPIIDAG-VKVE-----KGYEVYEEGVKNNY----FCKRED--GSDFVAAVWPGDTHFPDMLNPE 287 (666)
T ss_dssp HHHHHHHHHTTTCEEEEEEESC-EECC-----TTCHHHHHHHHTTC----BCBCTT--SCBCCEEETTEEEECBCTTSHH
T ss_pred HHHHHHHHHHcCceEEeeeccc-eeee-----cCchHHhhhcccCc----cccCCC--CCcceEEecCCccCCccccCHH
Confidence 8999999999999999644321 2211 111111100 0000 000001 1111111111 11235889999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEeecccCC
Q 015125 170 VRKDIIAWLRWLRNTVGFQDFRFDFARG 197 (413)
Q Consensus 170 vr~~l~~~~~~w~~~~gvDGfR~D~a~~ 197 (413)
+|+...+.++.++ +.|||||=+|+...
T Consensus 288 a~~ww~~~~~~~~-~~Gidg~W~DmnEp 314 (666)
T 3nsx_A 288 ARKWFGDKYRFLI-DQGIEGFWNDMNEP 314 (666)
T ss_dssp HHHHHHHTTHHHH-TTTCCEEEEESTTT
T ss_pred HHHHhhhhhhHHH-hccchhhhhccCCc
Confidence 9999999888887 79999999998753
|
| >1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.026 Score=54.12 Aligned_cols=86 Identities=22% Similarity=0.451 Sum_probs=57.0
Q ss_pred cCCceeEEEeeecCCCC------CccH-HHHHhhhhhHHHcCCCEEEcCCCC-----CCCCCCCCCcccCCCCCCCCC--
Q 015125 22 RNGREILFQGFNWESCK------HDWW-RNLERKVPDISKSGFTSVWLPPAT-----HSFAPEGYLPQNLYSLNSSYG-- 87 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~------~g~~-~gi~~~L~yLk~lGv~~I~L~Pi~-----~~~~~~gY~~~d~~~id~~~G-- 87 (413)
..|+.+.+++.+|.-.. +|.+ ..+.+.++.||++|+|+|=|+ +. +...... .|+...+|.+.
T Consensus 16 ~~G~~~~l~GvN~~g~~~~~~~~~g~~~~~~~~~~~~~~~~G~n~vRi~-~~~~~~~~~~~~~~---~~~~~~np~~~g~ 91 (358)
T 1ece_A 16 ANNVPVRIAGINWFGFETCNYVVHGLWSRDYRSMLDQIKSLGYNTIRLP-YSDDILKPGTMPNS---INFYQMNQDLQGL 91 (358)
T ss_dssp TTSCEECCEEEECCCBTTTTCSCTTTTTSCHHHHHHHHHHTTCCEEEEE-EEGGGGSTTCCCCS---CCCSSSCTTTTTC
T ss_pred CCCCEEEEEEEecCCcCccccCccchhhchHHHHHHHHHHcCCCEEEee-ccHHHhcCCCCCcc---ccccccCccccCc
Confidence 36778899999884211 2221 235788999999999999774 32 1111111 12222445443
Q ss_pred -CHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 88 -SEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 88 -t~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
..+-+.++|+.|.++||+||+|+-
T Consensus 92 ~~~~~ld~~v~~a~~~Gi~vild~h 116 (358)
T 1ece_A 92 TSLQVMDKIVAYAGQIGLRIILDRH 116 (358)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cHHHHHHHHHHHHHHCCCEEEEecC
Confidence 477899999999999999999985
|
| >2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase family 31, (beta/alpha)8 barre; HET: PXN; 2.30A {Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.16 Score=55.28 Aligned_cols=151 Identities=13% Similarity=0.073 Sum_probs=85.9
Q ss_pred ccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCC--EEEcCCCCCCCCCCCCCcc---cCCCCCC-CCCC
Q 015125 15 TDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFT--SVWLPPATHSFAPEGYLPQ---NLYSLNS-SYGS 88 (413)
Q Consensus 15 ~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~--~I~L~Pi~~~~~~~gY~~~---d~~~id~-~~Gt 88 (413)
+.++|.++-| |++.-..-.+-+.+.+-++.+++.||- +|||= .+|... -.+..|+ +|-.
T Consensus 427 p~mpP~WalG-------~wqsr~~Y~sq~ev~~va~~~re~gIPlDvi~lD--------~~y~~~~~~~dFtwD~~rFPd 491 (1020)
T 2xvl_A 427 SVMLPKWAYG-------FWQSRERYKSSDEIIQNLKEYRDRKIPIDNIVLD--------WSYWPEDAWGSHDFDKQFFPD 491 (1020)
T ss_dssp CCCCCGGGGS-------EEECCTTCCSHHHHHHHHHHHHHTTCCCCEEEEC--------SCCSCTTCTTSCCCCTTTCSC
T ss_pred CCCCCcceec-------eeeecCCCCCHHHHHHHHHHHHHcCCCcceEEEe--------ccccccCcccceEEChhhCCC
Confidence 4457777664 443333334688888999999888875 77762 222211 1245553 5554
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCC--CcCCCC
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGV--PNIDHT 166 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dln~~ 166 (413)
.++||+++|++|+|+++=+-+. +..+++ .|..... ..|. ..... +.. .....+.+. .-+|+.
T Consensus 492 ---p~~mv~~Lh~~G~k~vl~V~P~-I~~~s~----~Y~e~~~--~G~~----v~~~~-~~~-~~~w~wpG~~~~v~Dft 555 (1020)
T 2xvl_A 492 ---PKALVDKVHAMNAQIMISVWPK-FYPTTD----NYKELNA--KGFM----FNRNL-DEK-NLDWIGKGYLNAFYDPF 555 (1020)
T ss_dssp ---HHHHHHHHHHTTCEEEEEECSE-ECTTSH----HHHHHHH--TTCE----ETHHH-HTT-CCCSSTTCCCCEEECTT
T ss_pred ---HHHHHHHHHHCCCEEEEEECCc-cCCCch----hHHHHHh--CCCE----EEcCC-CCc-cccccCCCCCceeeCCC
Confidence 7899999999999998865442 333221 1211110 0000 00000 000 000001222 346999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEeecccC
Q 015125 167 QHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (413)
Q Consensus 167 ~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~ 196 (413)
||++++...+.+..-+.+.|||||=+|+..
T Consensus 556 NPear~~ww~~l~~~l~~~GiDg~W~DmnE 585 (1020)
T 2xvl_A 556 SPEATAIFWKQIRDKINVHGFDAWWLDAVE 585 (1020)
T ss_dssp SHHHHHHHHHHHHHHTGGGTCCEEEECCTT
T ss_pred ChHHHHHHHHHHHHHhhhcCCcEEEecCCC
Confidence 999999777777554458999999999863
|
| >3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.027 Score=53.97 Aligned_cols=65 Identities=11% Similarity=0.066 Sum_probs=47.7
Q ss_pred HHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCC---CHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 43 RNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYG---SEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 43 ~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~G---t~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
++..+.|+.||++|+|+|=|.+.......++ -.+.-.+| +.+.++++++.|+++||+|+|+.-+.
T Consensus 53 ~~~~~~l~~lk~~g~N~VrL~v~~~~~~~~~------~~~~~~~~~t~~~~~v~~~~~~Ak~~GL~V~l~p~i~ 120 (343)
T 3civ_A 53 DEARASMRALAEQPFNWVTLAFAGLMEHPGD------PAIAYGPPVTVSDDEIASMAELAHALGLKVCLKPTVN 120 (343)
T ss_dssp HHHHHHHHHHHHSSCSEEEEEEEEEESSTTC------CCCBCSTTTBCCHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEeeecCCCCCC------CcccccCCCCCCHHHHHHHHHHHHHCCCEEEEEEEee
Confidence 3667999999999999999876533221111 01111233 78999999999999999999998776
|
| >2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.055 Score=51.53 Aligned_cols=82 Identities=21% Similarity=0.352 Sum_probs=54.2
Q ss_pred CCceeEEEeeec--CC-CC---Cc-c---HHHHHhhhhhHHHcCCCEEEcCCCCCCC-----CCCCCCcccCCCCCCCCC
Q 015125 23 NGREILFQGFNW--ES-CK---HD-W---WRNLERKVPDISKSGFTSVWLPPATHSF-----APEGYLPQNLYSLNSSYG 87 (413)
Q Consensus 23 ~~~~~i~~~f~~--~~-~~---~g-~---~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-----~~~gY~~~d~~~id~~~G 87 (413)
.|+.+.+++.++ .. .. .| + ...+.+.+..+|++|+|+|=+.-..+.. ...|+ .+..++ .
T Consensus 15 nG~~~~~~GvN~~w~~~~~~~~~~~~~~~~~~~~~d~~~~k~~G~N~vR~~~~~~~~~~p~~~~~g~----~~~~~~--~ 88 (353)
T 2c0h_A 15 NGHHIFLSGANQAWVNYARDFGHNQYSKGKSTFESTLSDMQSHGGNSVRVWLHIEGESTPEFDNNGY----VTGIDN--T 88 (353)
T ss_dssp TTEEECEEEEECCCSSTTCSSSTTCHHHHHHHHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSC----EEECCT--T
T ss_pred CCeEEEEEEEEHHhhhccccccCCccccchHHHHHHHHHHHHcCCCEEEEceecCCccCccccCCCc----cccCCH--H
Confidence 677888999885 21 11 12 2 5667889999999999998663111110 01111 112222 3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE
Q 015125 88 SEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
..+.+.++++.|+++||+||+|+
T Consensus 89 ~~~~ld~~~~~a~~~Gi~vil~l 111 (353)
T 2c0h_A 89 LISDMRAYLHAAQRHNILIFFTL 111 (353)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEc
Confidence 46789999999999999999999
|
| >1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.026 Score=52.81 Aligned_cols=72 Identities=19% Similarity=0.402 Sum_probs=49.4
Q ss_pred cCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 015125 22 RNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~ 101 (413)
..|+.+.+++.++.. .++....+.++.||++|+|+|=| |+... + ++..+ ..+.++++|+.|.+
T Consensus 14 ~nG~~~~l~Gvn~~~---~w~~~~~~~~~~lk~~G~N~VRi-~~~~~---~------~w~~~----~~~~ld~~v~~a~~ 76 (302)
T 1bqc_A 14 ANGQEFIIRGVSHPH---NWYPQHTQAFADIKSHGANTVRV-VLSNG---V------RWSKN----GPSDVANVISLCKQ 76 (302)
T ss_dssp TTSCBCCCEEEEECT---TTCTTCTTHHHHHHHTTCSEEEE-EECCS---S------SSCCC----CHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEeeccc---ccCcchHHHHHHHHHcCCCEEEE-EccCC---c------ccCCC----CHHHHHHHHHHHHH
Confidence 367777888887621 01111126788899999999987 44321 0 11111 36889999999999
Q ss_pred cCCEEEEEE
Q 015125 102 HKVRAMADI 110 (413)
Q Consensus 102 ~Gi~VilD~ 110 (413)
+||+||+|+
T Consensus 77 ~Gi~Vild~ 85 (302)
T 1bqc_A 77 NRLICMLEV 85 (302)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEe
Confidence 999999997
|
| >1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.1 Score=49.78 Aligned_cols=50 Identities=10% Similarity=0.006 Sum_probs=38.1
Q ss_pred hhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 47 ~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
+.+.-||++|+|+|=|-. +..+. +..-+.+.+++++++|+++||+||+|+
T Consensus 31 ~~~~ilk~~G~n~vRlri-~v~P~-------------~g~~d~~~~~~~~~~ak~~Gl~v~ld~ 80 (334)
T 1fob_A 31 ALETILADAGINSIRQRV-WVNPS-------------DGSYDLDYNLELAKRVKAAGMSLYLDL 80 (334)
T ss_dssp CHHHHHHHHTCCEEEEEE-CSCCT-------------TCTTCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHcCCCEEEEEE-EECCC-------------CCccCHHHHHHHHHHHHHCCCEEEEEe
Confidence 357888999999999832 11111 233448899999999999999999997
|
| >1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.06 Score=53.81 Aligned_cols=72 Identities=13% Similarity=0.238 Sum_probs=51.1
Q ss_pred CCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015125 23 NGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~ 102 (413)
.|+.+++++.++...-...+ ..+.++.||++|+|+|=| |+... ..|. + ...+.++++|+.|.++
T Consensus 21 nG~~v~lrGvN~~~~W~~~~--~~~di~~ik~~G~N~VRi-pv~~g---~~~~--------~--~~l~~ld~vv~~a~~~ 84 (464)
T 1wky_A 21 NGNPFVMRGINHGHAWYKDQ--ATTAIEGIANTGANTVRI-VLSDG---GQWT--------K--DDIQTVRNLISLAEDN 84 (464)
T ss_dssp TSCBCCCEEEEECGGGCGGG--HHHHHHHHHTTTCSEEEE-EECCS---SSSC--------C--CCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEEeCcccCCcc--hHHHHHHHHHCCCCEEEE-EcCCC---CccC--------H--HHHHHHHHHHHHHHHC
Confidence 57778888887631001122 567889999999999988 55311 0111 1 3588999999999999
Q ss_pred CCEEEEEE
Q 015125 103 KVRAMADI 110 (413)
Q Consensus 103 Gi~VilD~ 110 (413)
||+||||+
T Consensus 85 Gl~VIlDl 92 (464)
T 1wky_A 85 NLVAVLEV 92 (464)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 99999997
|
| >3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.11 Score=54.42 Aligned_cols=124 Identities=10% Similarity=0.006 Sum_probs=73.7
Q ss_pred eEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCC-C--CCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015125 27 ILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT-H--SFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103 (413)
Q Consensus 27 ~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~-~--~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~G 103 (413)
+-|+-.+|. ..-..+.|..+|++|+|+|-+..+. . .+....| | .+.+.++|+.|+++|
T Consensus 13 ~~y~pe~w~------~~~~~~Dl~~mk~~G~n~vr~~if~W~~~eP~~g~~---~----------f~~ld~~i~~~~~~G 73 (675)
T 3tty_A 13 GDYNPEQWD------KATMEEDMRMFNLAGIDVATVNVFSWAKIQRDEVSY---D----------FTWLDDIIERLTKEN 73 (675)
T ss_dssp EECCGGGSC------HHHHHHHHHHHHHHTCCEEEECSSCHHHHBSSSSCB---C----------CHHHHHHHHHHHHTT
T ss_pred eeCChhhCC------HHHHHHHHHHHHHcCCCEEEEeeechhhhCCcCCcc---C----------HHHHHHHHHHHHHCC
Confidence 444445666 7888999999999999999985411 0 0111111 1 268999999999999
Q ss_pred CEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHh
Q 015125 104 VRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRN 183 (413)
Q Consensus 104 i~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~ 183 (413)
|+||+.+.. .+. | .|.....++|-.. +..+.. ..+......++.+|..++++.++++..++
T Consensus 74 i~vil~~~~--~~~--P------~Wl~~~~Pe~l~~------d~~G~~---~~~g~r~~~~~~~p~~~~~~~~~~~~l~~ 134 (675)
T 3tty_A 74 IYLCLATST--GAH--P------AWMAKKYPDVLRV------DYEGRK---RKFGGRHNSCPNSPTYRKYAKILAGKLAE 134 (675)
T ss_dssp CEEEEECCT--TSC--C------HHHHHHCGGGBCB------CTTSCB---CCSCSSSCBCTTCHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCC--CCC--C------hhhhhcCCceeee------cCCCcC---cccCCccCCCCCCHHHHHHHHHHHHHHHH
Confidence 999998642 111 1 1110000111100 000100 01222334567899999999999999887
Q ss_pred hcCCC
Q 015125 184 TVGFQ 188 (413)
Q Consensus 184 ~~gvD 188 (413)
.|+-+
T Consensus 135 ry~~~ 139 (675)
T 3tty_A 135 RYKDH 139 (675)
T ss_dssp HTTTC
T ss_pred HhCCC
Confidence 77643
|
| >1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A {Aquifex aeolicus} SCOP: c.1.8.1 | Back alignment and structure |
|---|
Probab=94.44 E-value=0.054 Score=54.38 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=45.8
Q ss_pred CCceeEEEeeecC-CCCCccHHHHH-hhhhhHHHcCCCEEEcCCCCCCC---CCCCCCcccCCCCC
Q 015125 23 NGREILFQGFNWE-SCKHDWWRNLE-RKVPDISKSGFTSVWLPPATHSF---APEGYLPQNLYSLN 83 (413)
Q Consensus 23 ~~~~~i~~~f~~~-~~~~g~~~gi~-~~L~yLk~lGv~~I~L~Pi~~~~---~~~gY~~~d~~~id 83 (413)
...|+++|+|-=. ..+=|||-... +-++.+++.|.+.++|+|+.+.. ++..|++.+-+.++
T Consensus 22 R~~Gill~l~SL~s~~GIGdfgd~a~~~vd~la~~G~~~~qilPL~pt~p~~~~SPY~~~S~fa~N 87 (505)
T 1tz7_A 22 RLAGILLHVTSLPSPYGIGDLGKEAYRFLDFLKECGFSLWQVLPLNPTSLEAGNSPYSSNSLFAGN 87 (505)
T ss_dssp CEEEEECCGGGSCCSSSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCCCGGGTTCTTSCSCSSSCC
T ss_pred cceEEEecccccCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCcCcccccccc
Confidence 4458899987532 22338998865 99999999999999999999864 24678876665555
|
| >3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.076 Score=50.91 Aligned_cols=73 Identities=15% Similarity=0.325 Sum_probs=49.9
Q ss_pred cCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 015125 22 RNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~ 101 (413)
..|+.+.+++..+...-.+. ...+.++.||++|+|+|=| |+... + .+.. ...+.++++|+.|.+
T Consensus 35 ~nG~~~~lrGvn~~~~~~~~--~~~~~i~~lk~~G~N~VRi-p~~~~----~-----~~~~----~~l~~ld~~v~~a~~ 98 (345)
T 3jug_A 35 ANGQPFVMKGINHGHAWYKD--TASTAIPAIAEQGANTIRI-VLSDG----G-----QWEK----DDIDTVREVIELAEQ 98 (345)
T ss_dssp TTSCBCCCEEEEECGGGCGG--GHHHHHHHHHHTTCSEEEE-EECCS----S-----SSCC----CCHHHHHHHHHHHHT
T ss_pred cCCCEEEEecccccccccCh--HHHHHHHHHHHcCCCEEEE-EecCC----C-----ccCH----HHHHHHHHHHHHHHH
Confidence 35666777777642111111 1246789999999999988 55321 1 1111 258899999999999
Q ss_pred cCCEEEEEE
Q 015125 102 HKVRAMADI 110 (413)
Q Consensus 102 ~Gi~VilD~ 110 (413)
+||+||+|+
T Consensus 99 ~GiyVIlDl 107 (345)
T 3jug_A 99 NKMVAVVEV 107 (345)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEe
Confidence 999999998
|
| >1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.23 Score=48.69 Aligned_cols=57 Identities=19% Similarity=0.343 Sum_probs=39.8
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcc--cCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQ--NLYSLNSSYG-SEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~--d~~~id~~~G-t~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
.+.++.||++|+|+|=| ||.- +.+.+. +-|. .| ..+.|+++|+.|+++||+||||+-
T Consensus 76 e~d~~~i~~~G~N~VRi-pi~~----~~~~~~~~~py~----~~~~l~~ld~vv~~a~~~Gi~VilDlH 135 (408)
T 1h4p_A 76 EQDFANIASQGFNLVRI-PIGY----WAFQILDDDPYV----SGLQESYLDQAIGWARNNSLKVWVDLH 135 (408)
T ss_dssp HHHHHHHHHTTCCEEEE-EEEG----GGTCCCTTCCCC----CSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHCCCCEEEc-cCCH----HHcccCCCCCCc----cccHHHHHHHHHHHHHHCCCEEEEECC
Confidence 56788999999999987 3321 011110 0011 14 578899999999999999999983
|
| >1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase, mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uz4_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.097 Score=51.81 Aligned_cols=88 Identities=13% Similarity=0.200 Sum_probs=56.6
Q ss_pred CCceeEEEeee-cCCC---CC---ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCC-----HH
Q 015125 23 NGREILFQGFN-WESC---KH---DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGS-----EH 90 (413)
Q Consensus 23 ~~~~~i~~~f~-~~~~---~~---g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt-----~~ 90 (413)
+|+.+.+++++ |... .+ .+-..+.+.|..+|++|+|+|=+. .+... . ++...-+..+.+.-|. .+
T Consensus 35 nG~p~~~~G~N~~~~~~~~~~~~~~~~~~~~~dl~~~k~~G~N~vR~~-~~d~~-~-~~~~~~~~~~~~~~g~~~e~~~~ 111 (440)
T 1uuq_A 35 QGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLKAIGVNNLRVL-AVSEK-S-EINSAVKPAVTNGFGNYDETLLQ 111 (440)
T ss_dssp TTEEECEEEEECTTHHHHTCSSTTCCHHHHHHHHHHHHHTTCCEEEEE-CCCBC-C-CSTTSCSSCSBSSTTCBCHHHHH
T ss_pred CCeEEEEEeEccCchhhhccCcccCCHHHHHHHHHHHHHcCCCEEEEC-cccCC-C-CCcccccccccCCCCccCHHHHH
Confidence 67788899988 3211 11 267788999999999999999887 22110 0 1100001122222232 45
Q ss_pred HHHHHHHHHHHcCCEEEEEEccc
Q 015125 91 LLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 91 ~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
.|.++++.|.++||+||+|+.-+
T Consensus 112 ~lD~~l~~a~~~Gi~vil~l~~~ 134 (440)
T 1uuq_A 112 GLDYLLVELAKRDMTVVLYFNNF 134 (440)
T ss_dssp HHHHHHHHHHHTTCEEEEECCBS
T ss_pred HHHHHHHHHHHCCCEEEEEcccc
Confidence 57799999999999999998633
|
| >3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.057 Score=53.86 Aligned_cols=84 Identities=26% Similarity=0.444 Sum_probs=56.1
Q ss_pred ceeEEEeeecCCC------CCc-cHHHHHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCc--ccCCCCCCCC---CCHHH
Q 015125 25 REILFQGFNWESC------KHD-WWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLP--QNLYSLNSSY---GSEHL 91 (413)
Q Consensus 25 ~~~i~~~f~~~~~------~~g-~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~--~d~~~id~~~---Gt~~~ 91 (413)
+.+.+++.+|.-. .+| +.+.+.+.++.||++|+|+|=|+ +.-.. ...+ .| .+ +..+|.+ ...+.
T Consensus 59 ~~v~l~GVN~~G~e~~~~~~~Gl~~~~~~~~i~~ik~~G~N~VRip-i~~~~l~~~~-~p~~~~-~~~np~~~~~~~l~~ 135 (458)
T 3qho_A 59 TPIHLFGVNWFGFETPNHVVHGLWKRNWEDMLLQIKSLGFNAIRLP-FCTESVKPGT-QPIGID-YSKNPDLRGLDSLQI 135 (458)
T ss_dssp EECCCEEEECCCTTSTTCSCTTTTTSCHHHHHHHHHHTTCCEEEEE-EETGGGSTTC-CCCCCC-TTTCGGGTTCCHHHH
T ss_pred ceEEEEEEecCcccccccccCCCCCCCHHHHHHHHHHcCCCEEEEe-eeHHHhCCCC-Cccccc-cccCccccchHHHHH
Confidence 6688999998422 233 23346778899999999999884 22110 0000 01 11 4455544 34788
Q ss_pred HHHHHHHHHHcCCEEEEEEc
Q 015125 92 LKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V 111 (413)
|.++|+.|+++||+||||+.
T Consensus 136 ld~vV~~a~~~Gi~VIldlH 155 (458)
T 3qho_A 136 MEKIIKKAGDLGIFVLLDYH 155 (458)
T ss_dssp HHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEecc
Confidence 99999999999999999993
|
| >1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.19 Score=49.08 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=41.9
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCC---CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFA---PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~---~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
.+.+.-||++|+|+|=|-. +-.+. ..+|.. ...+.+.+.++++.|+++||+||+|+ |.+.
T Consensus 51 ~d~~~ilk~~G~N~VRlrv-wv~p~~~~g~~y~~--------g~~d~~~~~~~a~~Ak~~GLkVlldf---HysD 113 (399)
T 1ur4_A 51 QDIFKTLKEAGVNYVRVRI-WNDPYDANGNGYGG--------GNNDLEKAIQIGKRATANGMKLLADF---HYSD 113 (399)
T ss_dssp CCHHHHHHHTTCCEEEEEE-CSCCBCTTCCBCST--------TCCCHHHHHHHHHHHHHTTCEEEEEE---CSSS
T ss_pred chHHHHHHHCCCCEEEEee-ecCCcccccCccCC--------CCCCHHHHHHHHHHHHHCCCEEEEEe---ccCC
Confidence 3467889999999999733 32111 112221 11358899999999999999999997 5543
|
| >1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.086 Score=54.96 Aligned_cols=120 Identities=9% Similarity=0.036 Sum_probs=71.8
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCC----CCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHS----FAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~----~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
-....+.++.+|++|+|+|-+. ++.- +....| ..+.+.++++.||++||+||+++- |.+.
T Consensus 13 ~~~~~~dl~~mk~~G~N~vR~~-if~W~~~eP~~g~~-------------d~~~ld~~ld~a~~~Gi~vil~~~--~~~~ 76 (645)
T 1kwg_A 13 KERWKEDARRMREAGLSHVRIG-EFAWALLEPEPGRL-------------EWGWLDEAIATLAAEGLKVVLGTP--TATP 76 (645)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEC-TTCHHHHCSBTTBC-------------CCHHHHHHHHHHHTTTCEEEEECS--TTSC
T ss_pred HHHHHHHHHHHHHcCCCEEEEe-eechhhcCCCCCcc-------------ChHHHHHHHHHHHHCCCEEEEeCC--CCCC
Confidence 6788889999999999999984 2110 001111 135789999999999999999862 2221
Q ss_pred CCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhc----CCCeEeec
Q 015125 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTV----GFQDFRFD 193 (413)
Q Consensus 118 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~----gvDGfR~D 193 (413)
.. |.....++|... ..++.. ..+......++.+|..++++...++.+++.+ .|.|+-++
T Consensus 77 P~--------Wl~~~~P~~~~~----~~~G~~-----~~~g~r~~~~~~~p~~~~~~~~~~~~l~~ry~~~p~V~~w~i~ 139 (645)
T 1kwg_A 77 PK--------WLVDRYPEILPV----DREGRR-----RRFGGRRHYCFSSPVYREEARRIVTLLAERYGGLEAVAGFQTD 139 (645)
T ss_dssp CH--------HHHHHCGGGSCB----CTTSCB-----CCSSSSCCCCTTCHHHHHHHHHHHHHHHHHHTTCTTEEEEECS
T ss_pred Ch--------hHhhcCCceeee----CCCCcC-----cccCccccCCCCCHHHHHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 10 110001122110 001100 0122223456778999999999998888777 47777666
Q ss_pred c
Q 015125 194 F 194 (413)
Q Consensus 194 ~ 194 (413)
.
T Consensus 140 N 140 (645)
T 1kwg_A 140 N 140 (645)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.068 Score=51.98 Aligned_cols=85 Identities=15% Similarity=0.154 Sum_probs=50.4
Q ss_pred CCceeEEEeee--cCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCC------------CCCCCCCcccCCCCCCCCCC
Q 015125 23 NGREILFQGFN--WESCKHDWWRNLERKVPDISKSGFTSVWLPPATHS------------FAPEGYLPQNLYSLNSSYGS 88 (413)
Q Consensus 23 ~~~~~i~~~f~--~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~------------~~~~gY~~~d~~~id~~~Gt 88 (413)
+|++..+.+.+ |-. -.+-+.+.+.|+.+|++|+|.|=+.-..+. +...-|+.... ++..--.
T Consensus 23 dGkp~~f~G~N~y~~~--~~~~~~i~~~l~~~a~~G~N~VRv~~f~d~~~~~~~~~~~lqp~~G~yd~~~~--~~~~~~~ 98 (383)
T 3pzg_A 23 NGKEFRFIGSNNYYMH--YKSNRMIDSVLESARDMGIKVLRIWGFLDGESYCRDKNTYMHPEPGVFGVPEG--ISNAQNG 98 (383)
T ss_dssp ----CCEEEEECSCTT--TSCHHHHHHHHHHHHHHTCCEEEEECCCBSHHHHHHHTEESBSBTTBCSSCTT--CSSCEEH
T ss_pred CCEEEEEEEEEecccc--cCCHHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccCCCccccccc--ccchHHH
Confidence 44455555554 321 124567888999999999999977432211 11122321111 1111112
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEc
Q 015125 89 EHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
.+.|.++|+.|+++||+||||+.
T Consensus 99 ~~~LD~~i~~A~k~GI~viL~l~ 121 (383)
T 3pzg_A 99 FERLDYTIAKAKELGIKLIIVLV 121 (383)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHHHHCCCEEEEEcc
Confidence 78899999999999999999995
|
| >1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.14 Score=49.23 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=52.6
Q ss_pred CCceeEEEeee--cCCC---CCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 015125 23 NGREILFQGFN--WESC---KHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLH 97 (413)
Q Consensus 23 ~~~~~i~~~f~--~~~~---~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~ 97 (413)
+|+++.+++++ |... +..+-..+.+.+..+|++|+|+|=+. ++.......+.+.. ...++ ...+.|.++|+
T Consensus 17 nG~p~~~~G~n~~~~~~~~~~~~~~~~~~~dl~~~k~~G~N~vR~~-~~~~~~w~~~~~~~-g~~~~--~~~~~ld~~i~ 92 (373)
T 1rh9_A 17 NGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTW-AFSHGGSRPLQSAP-GVYNE--QMFQGLDFVIS 92 (373)
T ss_dssp TTEEECEEEEECTTHHHHHHSTTTTHHHHHHHHHHHHTTCCEEEEE-SSCSSSSSCSEEET-TEECH--HHHHHHHHHHH
T ss_pred CCEEEEEEEEccccccccccCCccHHHHHHHHHHHHHCCCCEEEEC-eecCCCCccccCCC-CccCH--HHHHHHHHHHH
Confidence 67788888887 2100 00134567889999999999999873 22110011111110 00000 12566889999
Q ss_pred HHHHcCCEEEEEEcc
Q 015125 98 KMKQHKVRAMADIVI 112 (413)
Q Consensus 98 ~~h~~Gi~VilD~V~ 112 (413)
.|+++||+||+|+.-
T Consensus 93 ~a~~~Gi~vil~l~~ 107 (373)
T 1rh9_A 93 EAKKYGIHLIMSLVN 107 (373)
T ss_dssp HHHHTTCEEEEECCB
T ss_pred HHHHCCCEEEEEecc
Confidence 999999999999853
|
| >1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.049 Score=50.73 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=51.4
Q ss_pred cCCceeEEEeeecCCCCCcc--HHH-HHhhhhhHH-HcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 015125 22 RNGREILFQGFNWESCKHDW--WRN-LERKVPDIS-KSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLH 97 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~~g~--~~g-i~~~L~yLk-~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~ 97 (413)
..|+.+.+++++|--...++ -+- ..+.++.|| ++|+|+|=+ |+...+...+|. ..+|. +..+.++++|+
T Consensus 14 ~nG~~v~l~Gvn~~~~~~~~~~~~~~~~~di~~~~~~~G~N~vRi-~~~~~~~~~~~~-----~~~p~-~~~~~ld~~v~ 86 (293)
T 1tvn_A 14 AGGENTSFAGPSLFWSNTGWGAEKFYTAETVAKAKTEFNATLIRA-AIGHGTSTGGSL-----NFDWE-GNMSRLDTVVN 86 (293)
T ss_dssp ETTEECCCEEEEECCCCTTSSCGGGCSHHHHHHHHHHHCCSEEEE-EEECCTTSTTST-----TTCHH-HHHHHHHHHHH
T ss_pred eCCCEEEEEeeeecccccccCCCCCCCHHHHHHHHHhcCCCEEEE-eccccCCCCCcc-----ccChH-HHHHHHHHHHH
Confidence 36778888888764222121 111 256778899 599999987 332211112222 11221 23567889999
Q ss_pred HHHHcCCEEEEEE
Q 015125 98 KMKQHKVRAMADI 110 (413)
Q Consensus 98 ~~h~~Gi~VilD~ 110 (413)
.|.++||+||+|+
T Consensus 87 ~a~~~Gi~vild~ 99 (293)
T 1tvn_A 87 AAIAEDMYVIIDF 99 (293)
T ss_dssp HHHHTTCEEEEEE
T ss_pred HHHHCCCEEEEEc
Confidence 9999999999997
|
| >1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.11 Score=49.52 Aligned_cols=53 Identities=11% Similarity=-0.005 Sum_probs=40.3
Q ss_pred hhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 48 KVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 48 ~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
.+.-||++|+|+|=|.. +..+ . +.+-+.+.+.++++.|+++||+||+|+ |.+.
T Consensus 32 ~~~ilk~~G~N~VRi~~-w~~P-------~------~g~~~~~~~~~~~~~A~~~GlkV~ld~---Hysd 84 (332)
T 1hjs_A 32 LENILAANGVNTVRQRV-WVNP-------A------DGNYNLDYNIAIAKRAKAAGLGVYIDF---HYSD 84 (332)
T ss_dssp HHHHHHHTTCCEEEEEE-CSSC-------T------TCTTSHHHHHHHHHHHHHTTCEEEEEE---CCSS
T ss_pred HHHHHHHCCCCEEEEee-eeCC-------C------CCcCCHHHHHHHHHHHHHCCCEEEEEe---ccCC
Confidence 46778999999999743 2111 1 344468999999999999999999997 6543
|
| >2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.035 Score=55.78 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=51.6
Q ss_pred CCceeEEEeeecCCCC----CccHHHHHhhh-hhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 015125 23 NGREILFQGFNWESCK----HDWWRNLERKV-PDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLH 97 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~----~g~~~gi~~~L-~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~ 97 (413)
.|+.+++++++|.... +|...-..+.+ +.||++|+|+|=|.-.... ..+.. -.+ .....+.++++|+
T Consensus 41 ~G~~~~l~GvN~~~~~~~~~~g~~~~~~~di~~~l~~~G~N~VRl~v~w~~-----~~p~~-g~~--~~~~l~~l~~~v~ 112 (481)
T 2osx_A 41 DGRSLILRGFNTASSAKSAPDGMPQFTEADLAREYADMGTNFVRFLISWRS-----VEPAP-GVY--DQQYLDRVEDRVG 112 (481)
T ss_dssp TCCEECCEEEEECGGGGTCTTSCCSCCHHHHHHHHHHHCCCEEEEEECHHH-----HCSBT-TBC--CHHHHHHHHHHHH
T ss_pred CCCEEEeeeEecCCCCCCCCCCCccccHHHHHHHHHHCCCCEEEEeCcHHH-----cCCCC-CCc--CHHHHHHHHHHHH
Confidence 5777888998875321 23223455677 8999999999987421110 00000 001 1123567888999
Q ss_pred HHHHcCCEEEEEEc
Q 015125 98 KMKQHKVRAMADIV 111 (413)
Q Consensus 98 ~~h~~Gi~VilD~V 111 (413)
.|+++||+||||+-
T Consensus 113 ~a~~~Gi~vildlH 126 (481)
T 2osx_A 113 WYAERGYKVMLDMH 126 (481)
T ss_dssp HHHHTTCEEEEEEC
T ss_pred HHHHCCCEEEEEcc
Confidence 99999999999974
|
| >3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.075 Score=50.10 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=41.0
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCCCCCCCC-cccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSFAPEGYL-PQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~-~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
..+-++.||++|+|+|=|+ |. ..... +.+-|.+++. ..+.+.++|+.|+++||+||+|+
T Consensus 43 ~~~d~~~l~~~G~n~vRi~-i~----w~~~~~~~~~~~~~~~--~~~~~d~~v~~a~~~Gi~vildl 102 (320)
T 3nco_A 43 EDEYFKIIKERGFDSVRIP-IR----WSAHISEKYPYEIDKF--FLDRVKHVVDVALKNDLVVIINC 102 (320)
T ss_dssp CHHHHHHHHHHTCCEEEEC-CC----GGGSBCSSTTCCBCHH--HHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CHHHHHHHHHCCCCEEEEe-ee----hHHhcCCCCCCccCHH--HHHHHHHHHHHHHHCCCEEEEEc
Confidence 3678999999999999984 32 11111 1111333322 16789999999999999999997
|
| >2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.049 Score=31.68 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHcCCEEE
Q 015125 86 YGSEHLLKALLHKMKQHKVRAM 107 (413)
Q Consensus 86 ~Gt~~~~~~Lv~~~h~~Gi~Vi 107 (413)
-|++++|+.|-++|++.+|||-
T Consensus 11 ggtpeelkklkeeakkanirvt 32 (36)
T 2ki0_A 11 GGTPEELKKLKEEAKKANIRVT 32 (36)
T ss_dssp CCCHHHHHHHHHHHHHHCCCCC
T ss_pred cCCHHHHHHHHHHHHhccEEEE
Confidence 3899999999999999999974
|
| >1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=92.90 E-value=0.086 Score=50.15 Aligned_cols=59 Identities=8% Similarity=0.067 Sum_probs=40.7
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcc-cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQ-NLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~-d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
..+-++.||++|+|+|=|+--... +.+. +.+.++ -+..+.++++|+.|+++||+||||+
T Consensus 38 ~~~d~~~i~~~G~n~vRi~i~~~~-----~~~~~~p~~~~--~~~~~~ld~~v~~a~~~Gi~vildl 97 (341)
T 1vjz_A 38 KEEDFLWMAQWDFNFVRIPMCHLL-----WSDRGNPFIIR--EDFFEKIDRVIFWGEKYGIHICISL 97 (341)
T ss_dssp CHHHHHHHHHTTCCEEEEEEEGGG-----TSCSSCTTCCC--GGGHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHcCCCEEEeeCCHHH-----hcCCCCCCcCC--HHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 456788999999999987421111 1110 012222 2357889999999999999999998
|
| >3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.53 Score=46.46 Aligned_cols=138 Identities=10% Similarity=0.043 Sum_probs=76.9
Q ss_pred cHHHHHhhhhhH----HHcCCCEEEcCC-CCCC-CCCCCCCc---------ccCCCCC-CCCCC---HHHHHHHHHHHHH
Q 015125 41 WWRNLERKVPDI----SKSGFTSVWLPP-ATHS-FAPEGYLP---------QNLYSLN-SSYGS---EHLLKALLHKMKQ 101 (413)
Q Consensus 41 ~~~gi~~~L~yL----k~lGv~~I~L~P-i~~~-~~~~gY~~---------~d~~~id-~~~Gt---~~~~~~Lv~~~h~ 101 (413)
+-+.|.+.++.+ +++|+..|.|== .+.. ...++|.. -+ ..++ .+|-+ -..++.|++.+|+
T Consensus 27 ~e~~i~~~ad~~~~gl~~~G~~~~~iDDgW~~~~~~~~~y~~~~~~~~d~~G~-~~~~~~kFP~~~~~~Gl~~l~~~ih~ 105 (433)
T 3cc1_A 27 TEEEVLGNAEYMANHLKKYGWEYIVVDIQWYEPTANSSAYNPFAPLCMDEYGR-LLPATNRFPSAKNGAGFKPLSDAIHD 105 (433)
T ss_dssp CHHHHHHHHHHHHHHTGGGTCCEEEECSCTTCCCTTSTTCCTTSCSCBCTTSC-BCCCTTTCGGGTTTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcchhhCCeEEEECCCcCCCCCcccccccccccccCCCCC-EeECCccCCCcccCCCHHHHHHHHHH
Confidence 577888888888 999999887621 1111 01233421 11 1222 22211 1159999999999
Q ss_pred cCCEEEEEEccc----cCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHHHHHHHHH
Q 015125 102 HKVRAMADIVIN----HRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIA 176 (413)
Q Consensus 102 ~Gi~VilD~V~N----H~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~vr~~l~~ 176 (413)
+|||+=+=+.+. ++..+++.... +|....+.. .. ..|.+ ..+.-+|+.+|++++++..
T Consensus 106 ~Glk~Giw~~p~i~~~~v~~~s~~~~~----------~~~~~di~~-~~------~~~~~~~~~~~lD~~~p~~~~~~~~ 168 (433)
T 3cc1_A 106 LGLKFGIHIMRGIPRQAVYENSPVLGS----------TKTAREIAH-TN------SICPWNTDMYGVDPTKEGAQSYYNS 168 (433)
T ss_dssp TTCEEEEEEESSEEHHHHHHTCBCTTS----------SCBHHHHEE-TT------CCBTTBTTEEEECTTSTTHHHHHHH
T ss_pred cCCeeEEEeCCCCchhccCCCCccccc----------cceeccccc-CC------cccCCCCCceeecCCCHHHHHHHHH
Confidence 999974433222 11222221111 111000000 00 00111 2233489999999999988
Q ss_pred HHHHHHhhcCCCeEeecccCC
Q 015125 177 WLRWLRNTVGFQDFRFDFARG 197 (413)
Q Consensus 177 ~~~~w~~~~gvDGfR~D~a~~ 197 (413)
.++.+ .+.|||.+.+|....
T Consensus 169 ~~~~l-~~~GvDyvK~D~~~~ 188 (433)
T 3cc1_A 169 LFELY-AQWGVDFVKVDDIAA 188 (433)
T ss_dssp HHHHH-HHTTCCEEEEESCSC
T ss_pred HHHHH-HHcCCCEEEeCCccc
Confidence 88887 599999999998643
|
| >1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=92.63 E-value=0.071 Score=51.67 Aligned_cols=59 Identities=14% Similarity=0.271 Sum_probs=40.0
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
..+.++.||++|+|+|=|+--.. .+.+..-+.+++. ..+.++++|+.|.++||+||||+
T Consensus 63 ~~~di~~i~~~G~n~vRipv~w~-----~~~~~~~~~~~~~--~l~~l~~~v~~a~~~Gi~vild~ 121 (380)
T 1edg_A 63 TKQMIDAIKQKGFNTVRIPVSWH-----PHVSGSDYKISDV--WMNRVQEVVNYCIDNKMYVILNT 121 (380)
T ss_dssp CHHHHHHHHHHTCCEEEECCCCG-----GGEETTTTEECHH--HHHHHHHHHHHHHTTTCEEEEEC
T ss_pred cHHHHHHHHHcCCCEEEecccHH-----hhcCCCCCcCCHH--HHHHHHHHHHHHHHCCCEEEEeC
Confidence 45678889999999998853111 1111001122221 25778999999999999999997
|
| >3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A | Back alignment and structure |
|---|
Probab=92.45 E-value=0.15 Score=49.89 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=39.7
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSY-GSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~-Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+-++.||++|+|+|=|+=-+.. ..+.+ -+|.. |..+-|+++|+.|+++||+||||+
T Consensus 76 e~D~~~ik~~G~N~VRipi~~~~-----~~~~~---~~py~~~~~~~ld~vV~~a~~~Gl~VILDl 133 (399)
T 3n9k_A 76 EQDFKQISNLGLNFVRIPIGYWA-----FQLLD---NDPYVQGQVQYLEKALGWARKNNIRVWIDL 133 (399)
T ss_dssp HHHHHHHHHTTCCEEEEEEEGGG-----TCCCT---TCCCCCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEcccHHH-----ccCCC---CCccchhHHHHHHHHHHHHHHCCCEEEEEe
Confidence 46788899999999987321111 11110 01111 468899999999999999999998
|
| >1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=0.18 Score=48.44 Aligned_cols=76 Identities=17% Similarity=0.303 Sum_probs=49.4
Q ss_pred CCceeEEEeeecCCCCCccHHH--HHhhhhhHH-HcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 23 NGREILFQGFNWESCKHDWWRN--LERKVPDIS-KSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~~g~~~g--i~~~L~yLk-~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.|+.+.+++++|.- ..+... ..+.++.|+ ++|+|+|=|+ +.-. ..+ |.++|.+ .+.++++|+.|
T Consensus 33 ~G~~~~lrGvn~~~--~~~~~~~~~~~d~~~l~~~~G~N~VRip-~~~~--~~~------~~~~~~~--l~~ld~~v~~a 99 (364)
T 1g01_A 33 DGTPVQLRGMSTHG--LQWFGEIVNENAFVALSNDWGSNMIRLA-MYIG--ENG------YATNPEV--KDLVYEGIELA 99 (364)
T ss_dssp TSCBCCCEEEEESC--HHHHGGGCSHHHHHHHHTTSCCSEEEEE-EESS--SSS------TTTCTTH--HHHHHHHHHHH
T ss_pred CCCEEEEEEEecCc--ccccCCccCHHHHHHHHHHCCCCEEEEE-eeeC--CCC------CccCHHH--HHHHHHHHHHH
Confidence 46677888887630 000000 135677785 9999999873 3211 112 3444443 67899999999
Q ss_pred HHcCCEEEEEEc
Q 015125 100 KQHKVRAMADIV 111 (413)
Q Consensus 100 h~~Gi~VilD~V 111 (413)
.++||+||||+-
T Consensus 100 ~~~Gi~VIld~H 111 (364)
T 1g01_A 100 FEHDMYVIVDWH 111 (364)
T ss_dssp HHTTCEEEEEEE
T ss_pred HHCCCEEEEEec
Confidence 999999999984
|
| >1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=92.31 E-value=0.079 Score=49.18 Aligned_cols=79 Identities=11% Similarity=0.154 Sum_probs=49.8
Q ss_pred CCceeEEEeeecCCCCCccH--HH-HHhhhhhHH-HcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 015125 23 NGREILFQGFNWESCKHDWW--RN-LERKVPDIS-KSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHK 98 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~~g~~--~g-i~~~L~yLk-~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~ 98 (413)
+|+.+.+++++|-....|+- +- ..+.++.|| ++|+|+|=+ |+... ...+| ..+|. +..+.+.++|+.
T Consensus 15 nG~~~~l~Gvn~~~~~~~~~~~~~~~~~d~~~l~~~~G~N~vR~-~~~~~-~~~~~------~~~~~-~~~~~ld~~v~~ 85 (291)
T 1egz_A 15 GEKAKSFAGNSLFWSNNGWGGEKFYTADTVASLKKDWKSSIVRA-AMGVQ-ESGGY------LQDPA-GNKAKVERVVDA 85 (291)
T ss_dssp TTEECCCEEEEEEECCTTSSGGGGCSHHHHHHHHHTTCCCEEEE-EEECS-STTST------TTCHH-HHHHHHHHHHHH
T ss_pred CCCEEEEEEEeecccccccCCCccCCHHHHHHHHHHcCCCEEEE-ecccc-ccCCC------cCCHH-HHHHHHHHHHHH
Confidence 56777788776642222211 11 356788899 899999987 33221 11122 11111 235678899999
Q ss_pred HHHcCCEEEEEE
Q 015125 99 MKQHKVRAMADI 110 (413)
Q Consensus 99 ~h~~Gi~VilD~ 110 (413)
|.++||+||+|+
T Consensus 86 a~~~Gi~vild~ 97 (291)
T 1egz_A 86 AIANDMYAIIGW 97 (291)
T ss_dssp HHHTTCEEEEEE
T ss_pred HHHCCCEEEEEc
Confidence 999999999998
|
| >3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A | Back alignment and structure |
|---|
Probab=91.94 E-value=0.22 Score=47.25 Aligned_cols=76 Identities=17% Similarity=0.299 Sum_probs=50.2
Q ss_pred cCCceeEEEeeecCCCCCccHHH--HHhhhhhH-HHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 015125 22 RNGREILFQGFNWESCKHDWWRN--LERKVPDI-SKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHK 98 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~~g~~~g--i~~~L~yL-k~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~ 98 (413)
.+|+.+.+++.++- ..+++.. -.+.+..| |++|+|+|=+ |++.. ..|| .++|. ..+.+.++|+.
T Consensus 47 ~nG~~v~l~Gvn~h--~~~~~~~~~~~~~~~~l~~~~G~N~VRi-~~~~~--~~~~------~~~~~--~~~~ld~~v~~ 113 (327)
T 3pzt_A 47 RDGKAVQLKGISSH--GLQWYGEYVNKDSLKWLRDDWGITVFRA-AMYTA--DGGY------IDNPS--VKNKVKEAVEA 113 (327)
T ss_dssp TTSCBCCCEEEEES--CHHHHGGGCSHHHHHHHHHHTCCSEEEE-EEESS--TTST------TTCGG--GHHHHHHHHHH
T ss_pred CCCCEEEEEEEcCC--chhhcCCCCCHHHHHHHHHhcCCCEEEE-EeEEC--CCCc------ccCHH--HHHHHHHHHHH
Confidence 46778888888743 1111110 12346678 6899999988 44432 1222 23343 37899999999
Q ss_pred HHHcCCEEEEEE
Q 015125 99 MKQHKVRAMADI 110 (413)
Q Consensus 99 ~h~~Gi~VilD~ 110 (413)
|.++||+||+|+
T Consensus 114 a~~~Gi~VilD~ 125 (327)
T 3pzt_A 114 AKELGIYVIIDW 125 (327)
T ss_dssp HHHHTCEEEEEE
T ss_pred HHHCCCEEEEEe
Confidence 999999999997
|
| >4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila} | Back alignment and structure |
|---|
Probab=91.66 E-value=0.27 Score=46.15 Aligned_cols=91 Identities=11% Similarity=0.140 Sum_probs=55.4
Q ss_pred CCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC---CCCCCCccc--------CCCCC----CCCC
Q 015125 23 NGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF---APEGYLPQN--------LYSLN----SSYG 87 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~---~~~gY~~~d--------~~~id----~~~G 87 (413)
+|+++.++++++-.-.-.+-..+.+.|+.+|++|+|+|=+--..+.. ....|...+ ...+. +.+.
T Consensus 17 nG~~~~~~G~N~~~~~~~~~~~~~~~l~~~~~~G~N~iR~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (387)
T 4awe_A 17 DGKDFYFAGSNAYYFPFNDQPDIEKGMTAARAAGLTVFRTWGFNDKNRTYIPTGLPQYGNEGAGDPTNTVFQWFEADGTQ 96 (387)
T ss_dssp TTEECCEEEEECTTGGGSCHHHHHHHHHHHHHTTCCEEEEECCCEEESSCCTTCSSCCCCCTTCCTTCCCSEEECTTSCE
T ss_pred CCEEEEEEEEccCcCCCCCHHHHHHHHHHHHhCCCCEEEeCcccCCCccCccccchhhhccccccccchhhhhcccCccc
Confidence 78888899988321222456788999999999999999763221110 011111111 00000 1110
Q ss_pred --CHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 88 --SEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 88 --t~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
..+.+.+++++|.++||+||+++..+
T Consensus 97 ~~~~~~~d~~~~~a~~~gi~v~~~~~~~ 124 (387)
T 4awe_A 97 TIDVSPFDKVVDSATKTGIKLIVALTNN 124 (387)
T ss_dssp EECCGGGHHHHHHHHHHTCEEEEECCBS
T ss_pred hhhhhhHHHHHHHHHHcCCEEEEeeccc
Confidence 13457889999999999999998644
|
| >3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.071 Score=51.01 Aligned_cols=63 Identities=16% Similarity=0.119 Sum_probs=43.3
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCc-ccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLP-QNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~-~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
--++..+.++.||++|+|+|=| ||.-. ...+ ..-..+++. ..+.++++|+.|.++||+||||+
T Consensus 41 ~~~~t~~m~~~i~~~G~N~vRi-pi~w~----~~~~~~~~g~~~~~--~l~~ld~vV~~a~~~Gi~vIlDl 104 (340)
T 3qr3_A 41 YPDGIGQMQHFVNEDGMTIFRL-PVGWQ----YLVNNNLGGNLDST--SISKYDQLVQGCLSLGAYCIVDI 104 (340)
T ss_dssp SCCHHHHHHHHHHHHCCCEEEE-EECHH----HHTTTCTTCCCCHH--HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCccHHHHHHHHHHCCCCEEEE-EeeHH----HhCCCCCCCccCHH--HHHHHHHHHHHHHHCCCEEEEEe
Confidence 3467788888999999999987 33210 0011 000123322 27789999999999999999998
|
| >1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A | Back alignment and structure |
|---|
Probab=91.56 E-value=0.12 Score=49.16 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=39.4
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCccc-CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQN-LYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d-~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+.++.||++|+|+|=|+--...- .+.+ -..++ -+..+.++++|+.|+++||+||||+
T Consensus 31 ~~d~~~i~~~G~n~vRi~i~~~~~-----~~~~~~g~~~--~~~~~~l~~~v~~a~~~Gi~vildl 89 (343)
T 1ceo_A 31 EKDIETIAEAGFDHVRLPFDYPII-----ESDDNVGEYK--EDGLSYIDRCLEWCKKYNLGLVLDM 89 (343)
T ss_dssp HHHHHHHHHHTCCEEEEEEEGGGT-----BCSSSTTCBC--HHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEecCCHHHh-----ccccCCCccc--HHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 667889999999999875321110 0000 01111 1236789999999999999999997
|
| >3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=0.18 Score=48.15 Aligned_cols=59 Identities=14% Similarity=0.304 Sum_probs=40.6
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcc-cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQ-NLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~-d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
..+.++.||++|+|+|=|+ |. ...+.+. .-+.+++. ..+.++++|+.|+++||+||||+
T Consensus 44 t~~di~~i~~~G~n~vRip-i~----w~~~~~~~~~~~~~~~--~l~~l~~~v~~a~~~Gi~vildl 103 (345)
T 3ndz_A 44 THAMINKIKEAGFNTLRLP-VT----WDGHMGAAPEYTIDQT--WMKRVEEIANYAFDNDMYVIINL 103 (345)
T ss_dssp CHHHHHHHHHHTCCEEEEC-CC----CTTSBCCTTTCCBCHH--HHHHHHHHHHHHHTTTCEEEECC
T ss_pred cHHHHHHHHHCCCCEEEEe-ee----hHHhCCCCCCCccCHH--HHHHHHHHHHHHHHCCCEEEEec
Confidence 4677889999999999883 32 1111111 01233321 26789999999999999999997
|
| >3gyc_A Putative glycoside hydrolase; YP_001304622.1, structural GEN joint center for structural genomics, JCSG; HET: MSE; 1.85A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
Probab=91.02 E-value=0.22 Score=46.10 Aligned_cols=66 Identities=11% Similarity=0.250 Sum_probs=43.7
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEc--CCCC--CCCCCC-C----C-----CcccCCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 015125 40 DWWRNLERKVPDISKSGFTSVWL--PPAT--HSFAPE-G----Y-----LPQNLYSLNSSYGSEHLLKALLHKMKQHKVR 105 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L--~Pi~--~~~~~~-g----Y-----~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~ 105 (413)
+-|..+...++.+++.|+|+|=| ||.. .+++.- . | ++..-+.|+ ....|.+|.++||++|++
T Consensus 34 epf~DLD~afdEavERGYNTVRIcAmP~LLf~~p~~l~~l~pl~gQrrW~~pg~~evd----gr~~L~elf~aAk~hd~~ 109 (393)
T 3gyc_A 34 AGYEDWDQVLDELSERGYNAIRIDAYPHLIAENPMKKWLLKEVWNQQDWGSPDMNEVQ----VQPNLNLFLSKCKERDIK 109 (393)
T ss_dssp SSCSCHHHHHHHHHHTTCCEEEEECCHHHHHHCTTCCEEECCSCSSSSSSCSSCEEEC----CTTHHHHHHHHHHHTTCE
T ss_pred CChhHHHHHHHHHHHcCCCeEEeccccceeecCCcchhhccccccccccCCCCCceec----hHHHHHHHHHHHHHcCCE
Confidence 46777788999999999999866 4422 222111 0 1 111112222 346899999999999999
Q ss_pred EEEE
Q 015125 106 AMAD 109 (413)
Q Consensus 106 VilD 109 (413)
||+-
T Consensus 110 ViLS 113 (393)
T 3gyc_A 110 VGLS 113 (393)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9984
|
| >3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics, unknown function, hydrolase, PSI-2, protein structure initiative; 1.50A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=90.97 E-value=1.2 Score=41.56 Aligned_cols=81 Identities=11% Similarity=0.157 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCC
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQ 167 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~ 167 (413)
+.++|++.|+.||++|+||+|=+ +. |... ....+
T Consensus 60 ~~~~~~~~i~~~~~~g~kvllsi-----GG------------------~~~s-----------------------~~~~~ 93 (302)
T 3ebv_A 60 TVDQFKADVRAKQAAGKKVIISV-----GG------------------EKGT-----------------------VSVNS 93 (302)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEE-----EE------------------TTCC-----------------------CCCCS
T ss_pred CHHHHHHHHHHHHcCCCEEEEEE-----EC------------------CCCC-----------------------cccCC
Confidence 46889999999999999999976 11 0000 01346
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEeecccCCCcH----HHHHHHHHhhCCCe
Q 015125 168 HFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA----KYVKEYIEGARPIF 214 (413)
Q Consensus 168 ~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~----~~~~~~~~~~~~~~ 214 (413)
++.|+.+++.+..+++++|+||+-+|-=..... .+++++.++..+.+
T Consensus 94 ~~~r~~f~~~~~~~~~~~~~DGiDiD~E~p~~~~~~~~~l~~l~~~~g~~~ 144 (302)
T 3ebv_A 94 SASATNFANSVYSVMREYGFDGVDIDLENGLNPTYMTQALRALSAKAGPDM 144 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEECSCCCHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEecccccCHHHHHHHHHHHHHhcCCCE
Confidence 888999999998888999999999997554443 35566666554433
|
| >3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=0.38 Score=44.94 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=40.2
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCc-ccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSFAPEGYLP-QNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~-~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
..+.++.||++|+|+|=|+--... ..+ ..-|.+++ ...+.+.++|+.|.++||+||+|+
T Consensus 35 ~~~d~~~l~~~G~n~vR~~i~w~~-----~~~~~~~~~~~~--~~~~~~d~~v~~a~~~Gi~vild~ 94 (317)
T 3aof_A 35 KDEFFDIIKEAGFSHVRIPIRWST-----HAYAFPPYKIMD--RFFKRVDEVINGALKRGLAVVINI 94 (317)
T ss_dssp CTHHHHHHHHHTCSEEEECCCGGG-----GBCSSTTCCBCH--HHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CHHHHHHHHHcCCCEEEEeccHHH-----hcCCCCCCcCCH--HHHHHHHHHHHHHHHCCCEEEEEe
Confidence 356788999999999998632111 010 01122332 125678999999999999999998
|
| >2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A* | Back alignment and structure |
|---|
Probab=90.81 E-value=0.29 Score=45.73 Aligned_cols=76 Identities=13% Similarity=0.285 Sum_probs=48.8
Q ss_pred CCceeEEEeeecCCCCCccHH--HHHhhhhhHH-HcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 23 NGREILFQGFNWESCKHDWWR--NLERKVPDIS-KSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~~g~~~--gi~~~L~yLk-~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.|+.+.+++.+|- ...++. -..+.++.|+ ++|+|+|=| |+.-. ..|| .++|. +-.+.++++|+.|
T Consensus 22 ~G~~v~l~Gvn~~--~~~w~~~~~~~~d~~~l~~~~G~N~vRi-~~~~~--~~~~------~~~~~-~~l~~ld~~v~~a 89 (306)
T 2cks_A 22 HGNPVQLRGMSTH--GIQWFDHCLTDSSLDALAYDWKADIIRL-SMYIQ--EDGY------ETNPR-GFTDRMHQLIDMA 89 (306)
T ss_dssp TSCBCCCEEEECC--CHHHHGGGCSHHHHHHHHHTSCCSEEEE-EEESS--TTSG------GGCHH-HHHHHHHHHHHHH
T ss_pred CCCEEEEEEEecC--cccccCcCCCHHHHHHHHHHcCCCEEEE-Eeeec--CCCc------ccCHH-HHHHHHHHHHHHH
Confidence 5777788888653 011111 0135677785 699999988 44321 1232 23332 1247789999999
Q ss_pred HHcCCEEEEEE
Q 015125 100 KQHKVRAMADI 110 (413)
Q Consensus 100 h~~Gi~VilD~ 110 (413)
.++||+||||+
T Consensus 90 ~~~Gl~vild~ 100 (306)
T 2cks_A 90 TARGLYVIVDW 100 (306)
T ss_dssp HTTTCEEEEEE
T ss_pred HHCCCEEEEEe
Confidence 99999999997
|
| >3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB: 3ton_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=0.53 Score=50.62 Aligned_cols=157 Identities=13% Similarity=0.099 Sum_probs=86.0
Q ss_pred cccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcC--CCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHH
Q 015125 14 QTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSG--FTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHL 91 (413)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lG--v~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~ 91 (413)
.|.+||.++=| +|.=-|+. .+-+.+.+-++.+++.| +++||+=-=+ -.+| . .|..|++| .+
T Consensus 284 ~p~mpP~WalG----y~qsR~~Y---~~~~ev~~vv~~~r~~~IPlDvi~~Didy----m~~~--~-~FT~d~~F---Pd 346 (908)
T 3top_A 284 RPVMVPYWSLG----FQLCRYGY---QNDSEIASLYDEMVAAQIPYDVQYSDIDY----MERQ--L-DFTLSPKF---AG 346 (908)
T ss_dssp CCCCCCGGGGS----CEECCTTC---CSHHHHHHHHHHHHHHTCCCCEEEECGGG----SSTT--C-TTCCCGGG---TT
T ss_pred CCCCCChhhhh----cccccccC---CCHHHHHHHHHHHHHcCCCeeeEEeeccc----cccc--c-ccccCCCC---CC
Confidence 35567777665 33333332 24567777777777655 4777763110 0122 2 26677766 47
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCC-CCCCCCCCeeccCC-C---CCCCcCC-------C--CC
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGI-PLSWDEHAVTSCTG-G---LGNGSTG-------D--NF 157 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~-~~~~~~~~~~~~~~-~---~~~~~~~-------~--~~ 157 (413)
.++||+++|++|+|+|+=+-+. +..+.. ..|..|... ..++ +....+ + .+.+|.+ . +|
T Consensus 347 p~~mv~~Lh~~G~k~v~iidP~-I~~~~~---~~Y~~y~eg~~~g~----fvk~~~gg~~~~g~vWpG~~~v~~d~~~~~ 418 (908)
T 3top_A 347 FPALINRMKADGMRVILILDPA-ISGNET---QPYPAFTRGVEDDV----FIKYPNDGDIVWGKVWPDFPDVVVNGSLDW 418 (908)
T ss_dssp HHHHHHHHHHHTCEEEEEECSC-EECCCC---SCCHHHHHHHHHTC----BCBCSSSCCBCEEEEEEECSSCCCCTTSCH
T ss_pred HHHHHHHHHHCCCEEEEEeCCc-ccCCCC---CCCHHHHHHHhCCc----EEEcCCCCceeeEeccCCCccccccccccc
Confidence 8999999999999999865442 332211 113222110 0000 000000 0 0001100 0 00
Q ss_pred --------CCCCcCCCCCHHHHHHHHHHHHHHHhh-------cCCCeEeeccc
Q 015125 158 --------HGVPNIDHTQHFVRKDIIAWLRWLRNT-------VGFQDFRFDFA 195 (413)
Q Consensus 158 --------~~~~dln~~~~~vr~~l~~~~~~w~~~-------~gvDGfR~D~a 195 (413)
....-.|+.||++|++-.+.++.+.++ .||||+=+|+.
T Consensus 419 ~~~~~~~~~~~~fpDftnp~ar~WW~~~~~~~~~~~~~~~~~~gvdg~W~Dmn 471 (908)
T 3top_A 419 DSQVELYRAYVAFPDFFRNSTAKWWKREIEELYNNPQNPERSLKFDGMWIDMN 471 (908)
T ss_dssp HHHHHHTEEEEECBCTTSHHHHHHHHHHHHHHHSCSSCGGGCCCCSEEEECST
T ss_pred ccccccccCccccccCCCHHHHHHHHHHHHHHHhccccccccCCccEEEEecC
Confidence 011235788999999999999888753 89999999985
|
| >3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A {Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A* 3n18_A* 3n1a_A* | Back alignment and structure |
|---|
Probab=90.15 E-value=1.2 Score=42.15 Aligned_cols=69 Identities=16% Similarity=0.287 Sum_probs=52.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCC
Q 015125 81 SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGV 160 (413)
Q Consensus 81 ~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (413)
.++|...+.+++.+.++.||++|++|++=+ +. |...
T Consensus 50 ~~~~~~~~~~~~~~~i~~~k~~g~kvllsi-----GG------------------~~~s--------------------- 85 (333)
T 3n12_A 50 EFSPVYGTDADFKSDISYLKSKGKKVVLSI-----GG------------------QNGV--------------------- 85 (333)
T ss_dssp ECCCSSSCHHHHHHHHHHHHHTTCEEEEEE-----ES------------------TTCC---------------------
T ss_pred EecCCccchHHHHHHHHHHHhCCCeEEEEe-----cC------------------CCCc---------------------
Confidence 345555678899999999999999999866 11 1100
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 161 PNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 161 ~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
.-..+++.|+.+++.+..+++++|+||+-+|-=
T Consensus 86 --~~~~~~~~r~~fi~si~~~~~~~gfDGiDiDwE 118 (333)
T 3n12_A 86 --VLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLE 118 (333)
T ss_dssp --CCCCSHHHHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred --cccCCHHHHHHHHHHHHHHHHHcCCCeEEEecc
Confidence 012468889999999998899999999999964
|
| >2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=90.12 E-value=0.41 Score=48.04 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=40.7
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+.++.||++|+|+|=| |+.-.. .+|.... ..++.+ ..+.++++|+.|.++||+||||+
T Consensus 42 ~~d~~~i~~~G~N~VRi-pv~~~~--~~~~~~~--~~~~~~-~l~~ld~vv~~a~~~Gl~VIlD~ 100 (491)
T 2y8k_A 42 YDQIARVKELGFNAVHL-YAECFD--PRYPAPG--SKAPGY-AVNEIDKIVERTRELGLYLVITI 100 (491)
T ss_dssp HHHHGGGGGGTCCEEEE-EEEECC--TTTTSTT--CCCTTT-THHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEE-Cceeec--ccccCCC--ccChhH-HHHHHHHHHHHHHHCCCEEEEEC
Confidence 35678899999999987 553111 1221100 223332 37899999999999999999997
|
| >7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A | Back alignment and structure |
|---|
Probab=90.09 E-value=0.29 Score=45.69 Aligned_cols=76 Identities=13% Similarity=0.246 Sum_probs=49.7
Q ss_pred cCCceeEEEeeecCCCCCccHHHH--HhhhhhHH-HcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 015125 22 RNGREILFQGFNWESCKHDWWRNL--ERKVPDIS-KSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHK 98 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~~g~~~gi--~~~L~yLk-~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~ 98 (413)
..|+.+.+++.++- ...++... .+.+..|+ ++|+|+|=|+ +... ..|| ..+|. -.+.++++|+.
T Consensus 22 ~nG~~v~lrGvn~~--~~~~~~~~~~~~~~~~l~~~~G~N~VRip-~~~~--~~~~------~~~~~--~~~~ld~~v~~ 88 (303)
T 7a3h_A 22 ERGEQVQLKGMSSH--GLQWYGQFVNYESMKWLRDDWGINVFRAA-MYTS--SGGY------IDDPS--VKEKVKEAVEA 88 (303)
T ss_dssp TTSCBCCCEEEEES--CHHHHGGGCSHHHHHHHHHHTCCCEEEEE-EESS--TTST------TTCTT--HHHHHHHHHHH
T ss_pred CCCCEEEEEEeccC--ccccccccCCHHHHHHHHHhcCCCEEEEE-EEeC--CCCc------cCCHH--HHHHHHHHHHH
Confidence 36777888887653 11111111 34567787 7999999873 2211 1222 23444 37889999999
Q ss_pred HHHcCCEEEEEE
Q 015125 99 MKQHKVRAMADI 110 (413)
Q Consensus 99 ~h~~Gi~VilD~ 110 (413)
|.++||+||+|+
T Consensus 89 a~~~Gi~Vild~ 100 (303)
T 7a3h_A 89 AIDLDIYVIIDW 100 (303)
T ss_dssp HHHHTCEEEEEE
T ss_pred HHHCCCEEEEEe
Confidence 999999999998
|
| >3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A* | Back alignment and structure |
|---|
Probab=89.84 E-value=0.56 Score=45.19 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=39.5
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
..+-++.||++|+|+|=|+ |.-.. -+....-+.+++ ...+-++++|+.|.++||+||||+
T Consensus 64 ~~~di~~i~~~G~N~vRip-i~w~~---~~~~~~~~~~~~--~~l~~~~~vv~~a~~~Gi~vildl 123 (376)
T 3ayr_A 64 TEDMFKVLIDNQFNVFRIP-TTWSG---HFGEAPDYKIDE--KWLKRVHEVVDYPYKNGAFVILNL 123 (376)
T ss_dssp CHHHHHHHHHTTCCEEEEC-CCCTT---SBCCTTTCCBCH--HHHHHHHHHHHHHHTTTCEEEEEC
T ss_pred cHHHHHHHHHcCCCEEEEe-eEChh---hcCCCCCCccCH--HHHHHHHHHHHHHHHCCCEEEEEC
Confidence 4567888999999999884 32110 000000112221 125779999999999999999997
|
| >4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A* | Back alignment and structure |
|---|
Probab=89.84 E-value=0.15 Score=49.02 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=50.1
Q ss_pred cCCceeEEEeeecCCCC----CccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 015125 22 RNGREILFQGFNWESCK----HDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLH 97 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~----~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~ 97 (413)
.+|+.+.+++++|-... +|.+ ..+.++.||++|+|+|=++ +.... ..+.. + -...+.+.++|+
T Consensus 62 ~nG~~~~l~Gvn~~~~~~~~~~g~~--~~~di~~ik~~G~N~VRi~-~~~~~----~~~~~----~--~~~l~~ld~~v~ 128 (359)
T 4hty_A 62 EQGKTIVFRGVNISDPDKIDKDKRF--SKKHFEVIRSWGANVVRVP-VHPRA----WKERG----V--KGYLELLDQVVA 128 (359)
T ss_dssp TTCCEECCEEEEECCHHHHHHTTCC--SHHHHHHHHHTTCSEEEEE-ECHHH----HHHHH----H--HHHHHHHHHHHH
T ss_pred CCCCEEEEEEEecCCcccCCCCCCc--CHHHHHHHHhcCCCEEEEe-ccHHH----hhccC----C--HHHHHHHHHHHH
Confidence 57788899999985110 1222 1456778999999999984 32110 00000 0 012467899999
Q ss_pred HHHHcCCEEEEEE
Q 015125 98 KMKQHKVRAMADI 110 (413)
Q Consensus 98 ~~h~~Gi~VilD~ 110 (413)
.|.++||+||||+
T Consensus 129 ~a~~~Gi~Vild~ 141 (359)
T 4hty_A 129 WNNELGIYTILDW 141 (359)
T ss_dssp HHHHTTCEEEEEE
T ss_pred HHHHCCCEEEEEc
Confidence 9999999999997
|
| >2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A* | Back alignment and structure |
|---|
Probab=89.35 E-value=0.28 Score=47.56 Aligned_cols=61 Identities=11% Similarity=0.195 Sum_probs=40.2
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
..+.++.||++|+|+|=|+--.... -.+..-+.+++ ...+.++++|+.|+++||+||||+-
T Consensus 71 ~~~d~~~l~~~G~n~vRl~i~w~~~----~~~~~~~~~~~--~~l~~~d~~v~~a~~~Gi~vild~h 131 (395)
T 2jep_A 71 TPELIKKVKAAGFKSIRIPVSYLNN----IGSAPNYTINA--AWLNRIQQVVDYAYNEGLYVIINIH 131 (395)
T ss_dssp CHHHHHHHHHTTCCEEEECCCCGGG----BCCTTTCCBCH--HHHHHHHHHHHHHHTTTCEEEECCC
T ss_pred cHHHHHHHHHcCCCEEEEeeeeccc----cCCCCCCccCH--HHHHHHHHHHHHHHHCCCEEEEECC
Confidence 5567889999999999884322110 00110112221 1256799999999999999999974
|
| >4axn_A Chitinase C1; hydrolase; 1.68A {Serratia marcescens} | Back alignment and structure |
|---|
Probab=89.23 E-value=1.2 Score=41.93 Aligned_cols=66 Identities=12% Similarity=0.166 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCc
Q 015125 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPN 162 (413)
Q Consensus 83 d~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 162 (413)
.+.-.+.++|++.|+.||++|+||+|=+ |. |... + .
T Consensus 76 ~~~~~~~~~~~~~i~~~~~~g~kvllSi-----GG------------------~~~~-----------------~----~ 111 (328)
T 4axn_A 76 KPYNLSDTEFRRQVGVLNSQGRAVLISL-----GG------------------ADAH-----------------I----E 111 (328)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTCEEEEEE-----EE------------------TTCC-----------------C----C
T ss_pred ccCCCCHHHHHHHHHHHHHCCCEEEEEe-----CC------------------CCCC-----------------c----c
Confidence 3444578899999999999999999865 11 1100 0 0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 163 IDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 163 ln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
++ +.-|+.+++.+..+++++|+||+=+|-=
T Consensus 112 ~~---~~~r~~F~~s~~~~l~~ygfDGiDiDwE 141 (328)
T 4axn_A 112 LK---TGDEDKLKDEIIRLVEVYGFDGLDIDLE 141 (328)
T ss_dssp CC---TTCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred CC---hHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 11 1125667788877888999999999964
|
| >1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A | Back alignment and structure |
|---|
Probab=88.87 E-value=0.41 Score=44.67 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=38.1
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCc-ccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLP-QNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~-~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+.++.||++|+|+|=|+ |.-. ...+ ..-..+++ ...+-++++|+.|.++||+||||+
T Consensus 34 ~~di~~~~~~G~n~vRi~-i~w~----~~~~~~~~~~~~~--~~l~~~~~~v~~~~~~gi~vild~ 92 (305)
T 1h1n_A 34 PNTIDTLISKGMNIFRVP-FMME----RLVPNSMTGSPDP--NYLADLIATVNAITQKGAYAVVDP 92 (305)
T ss_dssp HHHHHHHHHTTCCEEEEE-ECHH----HHSCSSTTSCCCH--HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCCEEEec-ccHH----HcCCCCCCCCcCH--HHHHHHHHHHHHHHHCCCEEEEec
Confidence 567889999999999873 2100 0000 00011111 125679999999999999999997
|
| >4ac1_X Endo-N-acetyl-beta-D-glucosaminidase; hydrolase, glycoside hydrolase family 18, deglycosylation; HET: NAG; 1.30A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=87.64 E-value=3.4 Score=38.12 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=65.6
Q ss_pred cCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCC
Q 015125 55 SGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPL 134 (413)
Q Consensus 55 lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~ 134 (413)
.++|+|.+.=+.-. ..|+-. +.+..|.-..-+++.+=|++||++|+||+|=+ |.. ..+.|..+
T Consensus 31 ~~~THi~~af~~~~--~~g~i~--~~d~~p~~~~~~~l~~~i~~~q~~g~Kvllsi-----GG~---~~g~~~~~----- 93 (283)
T 4ac1_X 31 IALTHLIVCSFHIN--QGGVVH--LNDFPPDDPHFYTLWNETITMKQAGVKVMGMV-----GGA---APGSFNTQ----- 93 (283)
T ss_dssp CCCCEEEEEEEECC--TTSCCE--ETTBCTTSGGGHHHHHHHHHHHHTTCEEEEEE-----ETT---SSCSSSTT-----
T ss_pred CCccEEEEEEEEEC--CCCeEE--ECCCCccchHHHHHHHHHHHHHcCCCEEEEEE-----cCC---CCCCCccc-----
Confidence 56788776543322 223211 11222222233456667889999999999977 110 00111000
Q ss_pred CCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHH----HHHHHHHhh
Q 015125 135 SWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAK----YVKEYIEGA 210 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~----~~~~~~~~~ 210 (413)
..+-.+++.++.+...+...++++|+||+-+|-=.....+ ++++++++.
T Consensus 94 ---------------------------~~~~~~~~~~~~f~~~~~~~~~~~~~dG~D~d~e~~~~~~~~~~li~~Lr~~~ 146 (283)
T 4ac1_X 94 ---------------------------TLDSPDSATFEHYYGQLRDAIVNFQLEGMDLDVEQPMSQQGIDRLIARLRADF 146 (283)
T ss_dssp ---------------------------TTTCSSHHHHHHHHHHHHHHHHHTTCSEEEEECCSCBCHHHHHHHHHHHHHHH
T ss_pred ---------------------------ccccccHHHHHHHHHHHHHHHHHcCCCceEeecccCCCHHHHHHHHHHHHHHc
Confidence 0122345666777777777778999999999987666544 444555555
Q ss_pred CCCe
Q 015125 211 RPIF 214 (413)
Q Consensus 211 ~~~~ 214 (413)
.+.+
T Consensus 147 g~~~ 150 (283)
T 4ac1_X 147 GPDF 150 (283)
T ss_dssp CTTS
T ss_pred CCCc
Confidence 4434
|
| >1x1n_A 4-alpha-glucanotransferase; disproportionating enzyme, amylomaltase, D-enzyme; 1.80A {Solanum tuberosum} SCOP: c.1.8.1 | Back alignment and structure |
|---|
Probab=87.60 E-value=0.62 Score=46.95 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=17.7
Q ss_pred HHHHHHcCCEEEEEEccccCcCCC
Q 015125 96 LHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 96 v~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
-+.|+++||+||-|+.+- ++.++
T Consensus 228 ~~yA~~~GI~l~gDlpIg-V~~ds 250 (524)
T 1x1n_A 228 RDYARSKGISIMGDMPIY-VGYHS 250 (524)
T ss_dssp HHHHHHTTCEEEEEEESS-CCSSS
T ss_pred HHHHHHCCCEEEEeeece-eCCCc
Confidence 356889999999999876 44444
|
| >3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=87.53 E-value=0.7 Score=43.04 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=50.1
Q ss_pred ccccccccCCceeEEEeeecCCCCCccH--HHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHH
Q 015125 15 TDLGAVIRNGREILFQGFNWESCKHDWW--RNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHL 91 (413)
Q Consensus 15 ~~~~~~~~~~~~~i~~~f~~~~~~~g~~--~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~ 91 (413)
|++++....+..+-+|.+-+. +. ..+.+.|+.++++|+++|+|.+.-.... .+++.|.+ -+.++
T Consensus 11 ~~~~~~~~~~~~~g~~~~s~~-----~~~~~~l~~~l~~aa~~G~~~VEl~~~~~~~~~~~~~~p~~--------~~~~~ 77 (305)
T 3obe_A 11 TDAVSSATAGKKMGLQTYSLG-----QELLQDMPNGLNRLAKAGYTDLEIFGYREDTGKFGDYNPKN--------TTFIA 77 (305)
T ss_dssp SSCCCTTCCCCCCEEEGGGGT-----HHHHTTHHHHHHHHHHHTCCEEEECCBCTTTCCBCCC------------CCCBC
T ss_pred cccccccccCCceEEEEEEch-----hhhhcCHHHHHHHHHHcCCCEEEecccccccccccCcCccc--------ccccC
Confidence 344444434445788888876 33 3688999999999999999986522111 12333222 22335
Q ss_pred HHHHHHHHHHcCCEEE
Q 015125 92 LKALLHKMKQHKVRAM 107 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~Vi 107 (413)
.+++.+.+.++||+|+
T Consensus 78 ~~~l~~~l~~~GL~i~ 93 (305)
T 3obe_A 78 SKDYKKMVDDAGLRIS 93 (305)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHCCCeEE
Confidence 6667777888899986
|
| >1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A* | Back alignment and structure |
|---|
Probab=86.95 E-value=2.2 Score=42.90 Aligned_cols=126 Identities=10% Similarity=0.086 Sum_probs=76.2
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCC---------CC---CCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYS---------LN---SSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~---------id---~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
..+.|.+.||.++..++|.+++-.-=. ..|.+.+..|=. +. ..+=|.+|++++|+-|.++||+||-
T Consensus 172 ~~~~ik~~id~ma~~KlN~lh~HltDd--q~wriei~~~P~Lt~~ga~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIP 249 (512)
T 1jak_A 172 GVDEVKRYIDRVARYKYNKLHLHLSDD--QGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVP 249 (512)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEECBCS--SCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeccC--CCceehhhhhHHHHhhcCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 488999999999999999999875311 122222222111 11 1222789999999999999999998
Q ss_pred EE-ccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcC
Q 015125 109 DI-VINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG 186 (413)
Q Consensus 109 D~-V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~g 186 (413)
.+ ++.|+..-.. .|-.+.. .......+ .+++ .....||..+|++.+++.+++...++-|.
T Consensus 250 EID~PGH~~a~l~----aypeL~~-----~~~~~~~~-~~~~--------~~~~~l~~~~~~t~~fl~~v~~Ev~~lFp 310 (512)
T 1jak_A 250 EIDMPGHTNAALA----SYAELNC-----DGVAPPLY-TGTK--------VGFSSLCVDKDVTYDFVDDVIGELAALTP 310 (512)
T ss_dssp ECCCSSSCHHHHH----HCGGGST-----TSCCCCCC-CSCC--------CSCCCCCTTCHHHHHHHHHHHHHHHHTCC
T ss_pred ccCCCchHHHHHH----hCHHhcC-----cCCCCccc-cccC--------cCCcccCCCCHHHHHHHHHHHHHHHHhCC
Confidence 87 6777654110 0100100 00000000 0000 01235889999999999999999886443
|
| >2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A* | Back alignment and structure |
|---|
Probab=86.83 E-value=2.6 Score=41.70 Aligned_cols=119 Identities=11% Similarity=-0.096 Sum_probs=71.0
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCC-CCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCC
Q 015125 46 ERKVPDISKSGFTSVWLPPATHS-FAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGG 124 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~-~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~ 124 (413)
.+-++-+|+.|+..|-|+-=+.- ..-+.=..+++.+++... ..+-+++|+++|+++||++.+=+ +...+|
T Consensus 108 ~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~ns~~~~p-krDlv~El~~A~rk~Glk~GlY~-----S~~~dW--- 178 (455)
T 2zxd_A 108 QEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGP-KRDLVGDLAKAVREAGLRFGVYY-----SGGLDW--- 178 (455)
T ss_dssp HHHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTT-CSCHHHHHHHHHHHTTCEEEEEE-----ECSCCG---
T ss_pred HHHHHHHHHhCCCEEEEEeeccCCccccCCCCCCCcccccCC-CCChHHHHHHHHHHcCCeEEEEe-----cCCccc---
Confidence 44567889999999998754332 111111122444444222 45889999999999999999822 100011
Q ss_pred cccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccC
Q 015125 125 KYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (413)
Q Consensus 125 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~ 196 (413)
+.+ ..|.... .. .+... ..++.+.+++..-++.++..||.|++=+|...
T Consensus 179 ----~~p--~~~~~~~--------~~-----~y~~~----~~~~~y~~~~~~Ql~ELlt~Y~pd~lWfDg~~ 227 (455)
T 2zxd_A 179 ----RFT--TEPIRYP--------ED-----LSYIR----PNTYEYADYAYKQVMELVDLYLPDVLWNDMGW 227 (455)
T ss_dssp ----GGC--CSCCCSG--------GG-----GGTCS----CCSHHHHHHHHHHHHHHHHHHCCSEEEEESCC
T ss_pred ----cCc--ccccccc--------cc-----cccCC----CccHHHHHHHHHHHHHHHhhcCCcEEEECCCC
Confidence 100 0011000 00 00000 13678999999999999999999999999764
|
| >2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A* | Back alignment and structure |
|---|
Probab=86.65 E-value=1.2 Score=46.86 Aligned_cols=66 Identities=9% Similarity=-0.001 Sum_probs=49.1
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCC--CcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGY--LPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY--~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
.+.+.+.|+.++..+.|.+++.|- -..+|++ +..-| |.+ |.+++++||+-|+++||+||-.+-+-|
T Consensus 143 ~~~ik~~id~ma~~KlN~~h~hl~--Ddp~~~~~~wr~~y----P~l-t~~ei~elv~yA~~rgI~vvpeI~Pg~ 210 (716)
T 2cho_A 143 HQARLSQLKFYGKNKMNTYIYGPK--DDPYHSAPNWRLPY----PDK-EAAQLQELVAVANENEVDFVWAIHPGQ 210 (716)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCT--TCTTTSTTGGGSCC----CHH-HHHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEeec--cCcccccccccccC----Chh-hHHHHHHHHHHHHHcCCEEEEeecccc
Confidence 899999999999999999999773 1113332 11111 222 789999999999999999999884443
|
| >2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=86.51 E-value=3.9 Score=37.77 Aligned_cols=83 Identities=13% Similarity=0.092 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHH
Q 015125 90 HLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHF 169 (413)
Q Consensus 90 ~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~ 169 (413)
..+.+.|+.||++|+||++=+ +. |... .|. .+. .+++
T Consensus 72 ~~~~~~i~~~k~~g~kvllSi-----GG------------------~~~~----------------~fs---~~~-~~~~ 108 (290)
T 2y8v_A 72 NPLWAEVPVLKRSGVKVMGML-----GG------------------AAQG----------------SYR---CLD-GDQE 108 (290)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-----EC------------------SSTT----------------TTG---GGS-SCHH
T ss_pred HHHHHHHHHHHHCCCEEEEEE-----CC------------------CCCC----------------Cch---hcc-CCHH
Confidence 567888999999999999976 11 0000 010 011 3577
Q ss_pred HHHHHHHHHHHHHhhcCCCeEeecccCCCc----HHHHHHHHHhhCCCeE
Q 015125 170 VRKDIIAWLRWLRNTVGFQDFRFDFARGYS----AKYVKEYIEGARPIFS 215 (413)
Q Consensus 170 vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~----~~~~~~~~~~~~~~~~ 215 (413)
-|+.+++.+..+++++|+||+=+|-=.... ..+++++.++..+.++
T Consensus 109 ~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~~~~~~~ll~~Lr~~~~~~~~ 158 (290)
T 2y8v_A 109 KFERYYQPLLAMVRRHQLDGLDLDVEEEMSLPGIIRLIDRLKLDLGDDFI 158 (290)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEECCSCBCHHHHHHHHHHHHHHHCTTSE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEcccccchHHHHHHHHHHHHHHhCCCEE
Confidence 788888888888899999999999755443 2366777776655343
|
| >3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural genomics, joint center for structural genomics, JCSG; 1.55A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=85.85 E-value=1.8 Score=42.58 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHH
Q 015125 93 KALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRK 172 (413)
Q Consensus 93 ~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~ 172 (413)
.++|+.+|++|+||+|-+==+|.+.. | ..+ +++-|+
T Consensus 231 ~~~v~~lq~~glKVllSIgGg~~~~g--------------------------------------f---~~l---s~~~r~ 266 (451)
T 3poh_A 231 ETLLQPLRRRGVKVLLGLLGNHDITG--------------------------------------L---AQL---SEQGAK 266 (451)
T ss_dssp HHHTHHHHHTTCEEEEEEECCSSSCC--------------------------------------T---TCB---CHHHHH
T ss_pred HHHHHHHHHCCCEEEEEECcCCCCCC--------------------------------------c---ccC---CHHHHH
Confidence 67889999999999998732332210 1 112 568899
Q ss_pred HHHHHHHHHHhhcCCCeEeecccCC------C------c----HHHHHHHHHhhCC
Q 015125 173 DIIAWLRWLRNTVGFQDFRFDFARG------Y------S----AKYVKEYIEGARP 212 (413)
Q Consensus 173 ~l~~~~~~w~~~~gvDGfR~D~a~~------i------~----~~~~~~~~~~~~~ 212 (413)
.+.+.++.+++++|.||+-+|-=.. . . ..+++++++++..
T Consensus 267 ~Fa~~v~~~v~~yglDGIDiDwEYp~~~~~g~~~~~~~d~~nf~~Ll~eLR~~lp~ 322 (451)
T 3poh_A 267 DFAREVAQYCKAYNLDGVNYDDEYSNSPDLSNPSLTNPSTAAAARLCYETKQAMPD 322 (451)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCSCCCCCTTSTTBCSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999995211 1 1 3467788888743
|
| >3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=85.76 E-value=4.8 Score=41.44 Aligned_cols=61 Identities=16% Similarity=0.066 Sum_probs=46.9
Q ss_pred Cc-cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 39 HD-WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 39 ~g-~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
+| +.+....-+|.-+++|+..|.+--=.. +-.-.|+..+.|.+ ++++||+=||++|++|||
T Consensus 304 ~g~n~~~~k~yIDfAa~~G~~yvlvD~gW~-----~~~~~d~~~~~p~~----di~~l~~Ya~~kgV~i~l 365 (641)
T 3a24_A 304 TGVNNPTYKAYIDFASANGIEYVILDEGWA-----VNLQADLMQVVKEI----DLKELVDYAASKNVGIIL 365 (641)
T ss_dssp CSSSHHHHHHHHHHHHHTTCCEEEECTTSB-----CTTSCCTTCBCTTC----CHHHHHHHHHHTTCEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccc-----cCCCCCccccCCcC----CHHHHHHHHHhcCCEEEE
Confidence 44 899999999999999999999922111 11112566777764 599999999999999997
|
| >2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase); 2.00A {Elizabethkingia meningoseptica} SCOP: c.1.8.5 | Back alignment and structure |
|---|
Probab=84.97 E-value=2.4 Score=39.22 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHH
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVR 171 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr 171 (413)
+.+.|+.|+++|+||+|=+==+|.+.. +. .+. ++-|
T Consensus 73 ~~~~i~~lq~~glKVllSIGG~~~~~g--------------------------------------~~---~l~---~~~r 108 (289)
T 2ebn_A 73 RAKYLKPLQDKGIKVILSILGNHDRSG--------------------------------------IA---NLS---TARA 108 (289)
T ss_dssp HHHHTHHHHHTTCEEEEEEECCSSSCC--------------------------------------TT---CBC---HHHH
T ss_pred hHHHHHHHHhCCCEEEEEeCCCCCCCC--------------------------------------ee---cCC---HHHH
Confidence 567788999999999998733332110 11 111 5678
Q ss_pred HHHHHHHHHHHhhcCCCeEeecccC---------CC---c----HHHHHHHHHhhC
Q 015125 172 KDIIAWLRWLRNTVGFQDFRFDFAR---------GY---S----AKYVKEYIEGAR 211 (413)
Q Consensus 172 ~~l~~~~~~w~~~~gvDGfR~D~a~---------~i---~----~~~~~~~~~~~~ 211 (413)
+.+.+.+..+++++|.||+=+|-=. .. . ..+++++++++.
T Consensus 109 ~~Fa~sv~~~v~~ygfDGiDiDwEyp~~~~~g~~g~~~~d~~n~~~Ll~eLR~~l~ 164 (289)
T 2ebn_A 109 KAFAQELKNTCDLYNLDGVFFDDEYSAYQTPPPSGFVTPSNNAAARLAYETKQAMP 164 (289)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCSCCCCSSCCTTBCCCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCcEEEeeecCCCCccCCCCCCCccHHHHHHHHHHHHHHCC
Confidence 8899999999999999999999532 11 1 236777777774
|
| >3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=84.38 E-value=3.7 Score=40.75 Aligned_cols=130 Identities=12% Similarity=0.101 Sum_probs=81.4
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCCCCC--CCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCC
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSY--GSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQG 121 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id~~~--Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~ 121 (413)
..+-++-+|+.|+..|-|+-=+... .-|.=..++|...+..+ |..+-+++|+++|+++||++.+=+ |
T Consensus 56 ~~~w~~~~k~aGaky~v~takHHdGf~lw~S~~t~~~~~~~p~~~~k~Div~e~~~A~r~~Gl~~g~Y~---s------- 125 (469)
T 3eyp_A 56 CRQWMQTLKAAGIPAAILTAKHADGFCLWPSKYTDYSVKNAAWKNGKGDVVREFVDACEEYGLKAGIYL---G------- 125 (469)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECTTCCBSSCCTTCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCEEEEEE---C-------
T ss_pred HHHHHHHHHHcCCCEEEEEEEeCCCccccCCCCCCcccccCcccCCCCCHHHHHHHHHHHcCCeEEEEe---C-------
Confidence 4556778899999999876533221 11111234443444333 344889999999999999998821 1
Q ss_pred CCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcC-CCeEeecccCCC--
Q 015125 122 HGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG-FQDFRFDFARGY-- 198 (413)
Q Consensus 122 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~g-vDGfR~D~a~~i-- 198 (413)
..+|+... .| ++..+...+++..-++.++..|| |+.+=+|.+..-
T Consensus 126 -----------~~dw~~~~-------------------~~--~y~~~~Y~~~~~~Ql~ELlt~Yg~i~~lW~Dg~~~~~~ 173 (469)
T 3eyp_A 126 -----------PHDRHEHL-------------------SP--LYTTERYKEYYAHQLGELMSDYGKIWETWWDGAGADEL 173 (469)
T ss_dssp -----------SSCHHHHT-------------------ST--TCCHHHHHHHHHHHHHHHHHSSCCCCEEECCCTTCTTC
T ss_pred -----------hhHhCCCc-------------------Cc--ccCcHHHHHHHHHHHHHHHhcCCcccEEEeCCCCCCCc
Confidence 02233200 00 12246677888888999999998 789999987542
Q ss_pred cH---HHHHHHHHhhCCCeEE
Q 015125 199 SA---KYVKEYIEGARPIFSV 216 (413)
Q Consensus 199 ~~---~~~~~~~~~~~~~~~v 216 (413)
.. .-|.+++...+|..++
T Consensus 174 ~~~~~~~w~~~i~~~qP~~vi 194 (469)
T 3eyp_A 174 TTPVYRHWYKIVREKQPDCVI 194 (469)
T ss_dssp CHHHHHHHHHHHHHHCTTCEE
T ss_pred cchhHhHHHHHHHHHCcCcEE
Confidence 21 2355788888885554
|
| >3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A* 3a23_A* | Back alignment and structure |
|---|
Probab=84.16 E-value=1.7 Score=44.77 Aligned_cols=67 Identities=9% Similarity=0.127 Sum_probs=41.3
Q ss_pred cHHHHHhhhhhH-----HHcCCCEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEEcc
Q 015125 41 WWRNLERKVPDI-----SKSGFTSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 41 ~~~gi~~~L~yL-----k~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~ 112 (413)
+-+.+.+.++.+ +++|+..|.|===........ --| ..++| +|- ..++.|++.+|++||++.+=+-+
T Consensus 27 ~~~~~~~~ad~~~~~g~~~~G~~~~~iDdgW~~~~~d~--~g~-~~~~~~~fP--~gl~~l~~~i~~~Glk~gi~~~~ 99 (614)
T 3a21_A 27 DYSVIKKQVDAFVAAGLPAAGYTYINIDEGWWQGTRDS--AGN-ITVDTAEWP--GGMSAITAYIHSKGLKAGIYTDA 99 (614)
T ss_dssp CHHHHHHHHHHHHHTTHHHHTCCEEECCTTSCCSCBCT--TCC-BCCCTTTST--TCHHHHHHHHHHTTCEEEEEEES
T ss_pred CHHHHHHHHHHHHHcCHHhhCCEEEEECCCcCCCCcCC--CCC-EEECccccC--CcHHHHHHHHHHCCCeeEEEecC
Confidence 567777777775 999999998711000000000 123 24554 362 25999999999999997764433
|
| >3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=84.13 E-value=0.67 Score=47.73 Aligned_cols=60 Identities=8% Similarity=0.080 Sum_probs=43.5
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCC--CCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATH--SFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~--~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
-+-..+.|..+|++|+|+|-+.=... .+....| .|...+++.++++.|+++||+||+..-
T Consensus 36 ~e~w~~dl~~mK~~G~N~Vrt~v~W~~hEP~~G~y----------df~gl~~l~~fl~la~e~GL~VIl~~g 97 (612)
T 3d3a_A 36 KEYWEHRIKMCKALGMNTICLYVFWNFHEPEEGRY----------DFAGQKDIAAFCRLAQENGMYVIVRPG 97 (612)
T ss_dssp GGGHHHHHHHHHHHTCCEEEEECCHHHHCSSTTCC----------CCSGGGCHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEcChHHhcCCCCCcc----------ChhHHHHHHHHHHHHHHCCCEEEEecC
Confidence 56677889999999999999852221 0112222 244567899999999999999998753
|
| >3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase, hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A* 3vtr_A* | Back alignment and structure |
|---|
Probab=83.86 E-value=11 Score=38.43 Aligned_cols=125 Identities=6% Similarity=-0.031 Sum_probs=75.8
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCC--------CCCCCCCCHHHHHHHHHHHHHcCCEEEEEE-c
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLY--------SLNSSYGSEHLLKALLHKMKQHKVRAMADI-V 111 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~--------~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~-V 111 (413)
..+.|.+.||.++..++|.+++.--=. ..+.|.+..|= ..+ .+=|.+|++++|+-|.++||+||-.+ +
T Consensus 202 ~~~~ik~~id~mA~~KlN~lH~HltDd--qgwrlei~~~P~Lt~~Ga~~~~-~~YT~~di~eiv~yA~~rgI~VIPEId~ 278 (572)
T 3ozo_A 202 SIESIKRTIEAMAAVKLNTFHWHITDS--QSFPFVTTKRPNLYKFGALSPQ-KVYTKAAIREVVRFGLERGVRVLPEFDA 278 (572)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCS--SCCCBCCSSSHHHHHHHSSSSS-SCBCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCceEEEEeecC--cCceeccccCcchhccCCcCCC-CCcCHHHHHHHHHHHHHhCCceeeeecc
Confidence 488999999999999999999875211 13344433321 111 22279999999999999999999555 4
Q ss_pred cccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcC
Q 015125 112 INHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG 186 (413)
Q Consensus 112 ~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~g 186 (413)
+.|+...-. +.... .+....+|.. .+.-...-.||..+|++-+++.+++...++-|.
T Consensus 279 PGH~~a~~~-----~~~l~----------~~~~~~~~~~---~~~~~~~~~l~~~~~~t~~fl~~v~~Ev~~lF~ 335 (572)
T 3ozo_A 279 PAHVGEGWQ-----DTDLT----------VCFKAEPWKS---YCVEPPCGQLNPTKDELYQYLEDIYSDMAEVFD 335 (572)
T ss_dssp SSSCCTTCT-----TTTCE----------ECTTCSSGGG---TCSSSSCCEECTTCTHHHHHHHHHHHHHHHHCC
T ss_pred chHHHHHhc-----Cchhh----------hccCcCCccc---cccCCCCcccCCCChhHHHHHHHHHHHHHHhcC
Confidence 578754211 10000 0000001100 000001124788899999999999988876554
|
| >1eok_A Endo-beta-N-acetylglucosaminidase F3; alpha/beta-barrel, hydrolase; 1.80A {Elizabethkingia meningoseptica} SCOP: c.1.8.5 PDB: 1eom_A* | Back alignment and structure |
|---|
Probab=83.43 E-value=1.5 Score=40.56 Aligned_cols=63 Identities=6% Similarity=0.098 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCC
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQ 167 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~ 167 (413)
...++++.|+.||++|+||+|=+ +. + . .|.. . .-..
T Consensus 64 ~~~~~~~~i~~~q~~g~KVllSI-----GG-~------~-~~~~-------~------------------------~~~~ 99 (290)
T 1eok_A 64 SYKDLDTQIRSLQSRGIKVLQNI-----DD-D------V-SWQS-------S------------------------KPGG 99 (290)
T ss_dssp SHHHHHHHHHHHHTTTCEEEEEE-----EC-C------G-GGGS-------S------------------------SGGG
T ss_pred cHHHHHHHHHHHHhCCCEEEEEe-----CC-C------c-CCCC-------c------------------------cccc
Confidence 45778888999999999999976 11 0 0 1110 0 0011
Q ss_pred HHHHHHHHHHHHH-HHhhcCCCeEeecc
Q 015125 168 HFVRKDIIAWLRW-LRNTVGFQDFRFDF 194 (413)
Q Consensus 168 ~~vr~~l~~~~~~-w~~~~gvDGfR~D~ 194 (413)
++-|+.+++.+.. +++++|+||+=+|-
T Consensus 100 ~~~r~~fa~s~~~~~l~~yg~DGiDiDw 127 (290)
T 1eok_A 100 FASAAAYGDAIKSIVIDKWKLDGISLDI 127 (290)
T ss_dssp SSSHHHHHHHHHHHHTTTTCCCEEEEEC
T ss_pred hhHHHHHHHHHHHHHHHhcCCCcEEEec
Confidence 1236667777776 88999999999995
|
| >2x2h_A Alpha-1,4-glucan lyase isozyme 1; anhydrofructose pathway, glycoside hydrolase family 3 starch binding domain; 2.06A {Gracilariopsis lemaneiformis} PDB: 2x2i_A* 2x2j_A* | Back alignment and structure |
|---|
Probab=83.36 E-value=0.66 Score=50.74 Aligned_cols=32 Identities=16% Similarity=-0.027 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 163 IDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 163 ln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
.|+.||+++++..+.++.++ +.|||||=+|+-
T Consensus 513 pDFtnp~a~~WW~~~~k~l~-~~GvDg~W~Dmn 544 (1027)
T 2x2h_A 513 PDWGRPDVAEWWGNNYKKLF-SIGLDFVWQDMT 544 (1027)
T ss_dssp BCTTSTTHHHHHHHTTHHHH-TTTCCEEEECST
T ss_pred cCCCCHHHHHHHHHHHHHHh-hCCCCEEEEcCC
Confidence 57889999999999999887 899999999985
|
| >3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A* | Back alignment and structure |
|---|
Probab=82.89 E-value=0.57 Score=48.29 Aligned_cols=66 Identities=8% Similarity=0.072 Sum_probs=45.7
Q ss_pred EEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCC--C-CCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015125 28 LFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATH--S-FAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV 104 (413)
Q Consensus 28 i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~--~-~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi 104 (413)
=+|.|-|. -+-..+.|.-+|++|+|+|.+ +++= . +...-| .|....||.++++.|+++||
T Consensus 31 ~~Hy~r~p------~~~W~d~l~kmKa~G~NtV~~-yv~W~~hEP~~G~f----------dF~g~~DL~~fl~~a~~~GL 93 (654)
T 3thd_A 31 SIHYSRVP------RFYWKDRLLKMKMAGLNAIQT-YVPWNFHEPWPGQY----------QFSEDHDVEYFLRLAHELGL 93 (654)
T ss_dssp ECCGGGSC------GGGHHHHHHHHHHTTCSEEEE-ECCHHHHCSBTTBC----------CCSGGGCHHHHHHHHHHTTC
T ss_pred ecccccCC------HHHHHHHHHHHHHcCCCEEEE-EechhhcCCCCCcc----------CccchHHHHHHHHHHHHcCC
Confidence 35666665 455666888899999999998 4330 0 111111 22335689999999999999
Q ss_pred EEEEEE
Q 015125 105 RAMADI 110 (413)
Q Consensus 105 ~VilD~ 110 (413)
.|||..
T Consensus 94 ~ViLr~ 99 (654)
T 3thd_A 94 LVILRP 99 (654)
T ss_dssp EEEEEC
T ss_pred EEEecc
Confidence 999974
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=82.62 E-value=3.2 Score=37.35 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=40.2
Q ss_pred HHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 44 gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+.+-+.+.++||+++|+++== +-.+ +.++..++|+.+++.|++|+..+
T Consensus 86 ~~~~yl~~~k~lGf~~iEiS~G-------------~i~l-----~~~~~~~~I~~~~~~G~~v~~Ev 134 (251)
T 1qwg_A 86 KFDEFLNECEKLGFEAVEISDG-------------SSDI-----SLEERNNAIKRAKDNGFMVLTEV 134 (251)
T ss_dssp CHHHHHHHHHHHTCCEEEECCS-------------SSCC-----CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHHHHcCCCEEEECCC-------------cccC-----CHHHHHHHHHHHHHCCCEEeeec
Confidence 4566788999999999998752 1233 38999999999999999998877
|
| >3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron} PDB: 3co4_A | Back alignment and structure |
|---|
Probab=82.45 E-value=1.5 Score=41.04 Aligned_cols=79 Identities=10% Similarity=0.173 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCH
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQH 168 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~ 168 (413)
...|++|+++||..|+||++-+ . +.. .+.+ . . -..++
T Consensus 51 ~~~~~~~~~k~~~~~lkvllsi--G--G~~----~~~~-------------------------------~---~-~~~~~ 87 (312)
T 3fnd_A 51 RKRIESVRETAHKHNVKILISL--A--KNS----PGEF-------------------------------T---T-AINDP 87 (312)
T ss_dssp TTTHHHHHHHHHHTTCEEEEEE--E--ESS----TTHH-------------------------------H---H-HHHSH
T ss_pred HHHHHHHHHHHHcCCCEEEEEE--c--CCC----Cchh-------------------------------h---H-HhCCH
Confidence 4458899999999999999866 1 110 0000 0 0 11367
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEeeccc-CCCc----HHHHHHHHH-hh
Q 015125 169 FVRKDIIAWLRWLRNTVGFQDFRFDFA-RGYS----AKYVKEYIE-GA 210 (413)
Q Consensus 169 ~vr~~l~~~~~~w~~~~gvDGfR~D~a-~~i~----~~~~~~~~~-~~ 210 (413)
+.|+.+++.+..+++++|+||+-+|-= .... ..|++++.+ ++
T Consensus 88 ~~r~~fi~si~~~~~~~~~DGiDiDwE~~p~~~~~~~~ll~eLr~~~l 135 (312)
T 3fnd_A 88 KARKELIQQIIAFTKEYKLDGFDIDYEEYDNWDKNFPSLLVFARGLYL 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEECCCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEeeeeCCCchHHHHHHHHHHHHHHh
Confidence 889999999988889999999999964 2211 347888888 77
|
| >4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A | Back alignment and structure |
|---|
Probab=82.43 E-value=0.41 Score=48.80 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=44.9
Q ss_pred EEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCC-C-C-CCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015125 28 LFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT-H-S-FAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV 104 (413)
Q Consensus 28 i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~-~-~-~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi 104 (413)
=+|.|-|. -+-..+.|.-+|++|+|+|.+ +|+ . . +...-| | |....|+.++++.|+++||
T Consensus 23 ~~Hy~r~p------~~~W~d~l~kmKa~G~NtV~~-yv~W~~hEP~~G~f---d-------F~g~~dL~~fl~~a~~~Gl 85 (595)
T 4e8d_A 23 AIHYFRVP------PEDWYHSLYNLKALGFNTVET-YVAWNLHEPCEGEF---H-------FEGDLDLEKFLQIAQDLGL 85 (595)
T ss_dssp EECGGGSC------GGGHHHHHHHHHHTTCCEEEE-ECCHHHHCSBTTBC---C-------CSGGGCHHHHHHHHHHTTC
T ss_pred EeChhhCC------HHHHHHHHHHHHHcCCCEEEE-eccHHHcCCCCCee---c-------ccchhhHHHHHHHHHHcCC
Confidence 36667665 455567888899999999998 433 1 1 111111 1 2234679999999999999
Q ss_pred EEEEE
Q 015125 105 RAMAD 109 (413)
Q Consensus 105 ~VilD 109 (413)
.|||-
T Consensus 86 ~Vilr 90 (595)
T 4e8d_A 86 YAIVR 90 (595)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99995
|
| >2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A* | Back alignment and structure |
|---|
Probab=82.17 E-value=2.1 Score=43.50 Aligned_cols=68 Identities=10% Similarity=0.276 Sum_probs=47.7
Q ss_pred CCceeEEEeeecCC-----C-CCc-------------cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCC
Q 015125 23 NGREILFQGFNWES-----C-KHD-------------WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83 (413)
Q Consensus 23 ~~~~~i~~~f~~~~-----~-~~g-------------~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id 83 (413)
+|+.+++++..+.- . ..| +-+.+.+-+..||++|||+|=+ |.++
T Consensus 48 NG~~f~lkGVny~p~~~~~~~~~G~~~~~~~~~d~l~~~e~~~rDi~LmK~~GiN~VRv-----------------y~~~ 110 (555)
T 2w61_A 48 SGEQFFIKGIAYQLQRSEEELSNANGAFETSYIDALADPKICLRDIPFLKMLGVNTLRV-----------------YAID 110 (555)
T ss_dssp TCCBCCEEEEECCCCCC------CTTTTCCSSCCGGGCHHHHHHHHHHHHHHTCSEEEE-----------------CCCC
T ss_pred CCeEEEEEEEECCCcccccccccCCccccccccccCCCHHHHHHHHHHHHHcCCCEEEE-----------------eccC
Confidence 66677888877652 0 001 3467788899999999999987 1233
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 84 SSYGSEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 84 ~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
|.-+. .++++.|++.||.||+|+-
T Consensus 111 P~~~~----d~~ldl~~~~GIyVIle~~ 134 (555)
T 2w61_A 111 PTKSH----DICMEALSAEGMYVLLDLS 134 (555)
T ss_dssp TTSCC----HHHHHHHHHTTCEEEEESC
T ss_pred CCCCh----HHHHHHHHhcCCEEEEeCC
Confidence 33333 4667789999999999973
|
| >1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A {Aquifex aeolicus} SCOP: c.1.8.1 | Back alignment and structure |
|---|
Probab=81.76 E-value=1.2 Score=44.61 Aligned_cols=23 Identities=4% Similarity=0.112 Sum_probs=17.8
Q ss_pred HHHHHHcCCEEEEEEccccCcCCC
Q 015125 96 LHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 96 v~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
-+.|+++||+||-|+.+- ++.++
T Consensus 213 ~~yA~~~GI~ligDlpIg-V~~ds 235 (505)
T 1tz7_A 213 RRYARERGISIVGDLPMY-PSYSS 235 (505)
T ss_dssp HHHHHHTTCEEEEEECSS-CCSSS
T ss_pred HHHHHHCCCEEEEeeece-eCCCC
Confidence 456889999999999876 44444
|
| >2aam_A Hypothetical protein TM1410; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE UNL; 2.20A {Thermotoga maritima} SCOP: c.1.8.15 | Back alignment and structure |
|---|
Probab=81.60 E-value=3.5 Score=38.57 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCC
Q 015125 163 IDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARG 197 (413)
Q Consensus 163 ln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~ 197 (413)
+|.++|++|+.|.+.++..+ +.|+|||=+|.+..
T Consensus 113 vDi~~~~w~~i~~~rl~~~~-~kG~DGvflDnvD~ 146 (309)
T 2aam_A 113 VKYWYNEWKEIVFSYLDRVI-DQGFKGIYLDRIDS 146 (309)
T ss_dssp ECTTSHHHHHHHHHHHHHHH-HTTCSEEEEECTTH
T ss_pred EecCCHHHHHHHHHHHHHHH-HcCCCeEeecccch
Confidence 78899999999999998776 89999999998753
|
| >3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 1.75A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=81.53 E-value=4.6 Score=37.91 Aligned_cols=61 Identities=18% Similarity=0.335 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCC
Q 015125 87 GSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHT 166 (413)
Q Consensus 87 Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 166 (413)
-+...+.+.|+.||++|+||+|=+ +. |... +. +
T Consensus 63 ~~~~~~~~~i~~~k~~g~kvllsi-----GG------------------~~~~-----------------~~----~--- 95 (321)
T 3ian_A 63 KTDTEFRAEISKLNAEGKSVLIAL-----GG------------------ADAH-----------------IE----L--- 95 (321)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEEE-----EE------------------TTCC-----------------CC----C---
T ss_pred ccchhHHHHHHHHHHCCCEEEEEe-----cc------------------CCCC-----------------cc----c---
Confidence 346789999999999999999876 21 0000 00 1
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEeecc
Q 015125 167 QHFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (413)
Q Consensus 167 ~~~vr~~l~~~~~~w~~~~gvDGfR~D~ 194 (413)
++.-|+.+++.+..+++++|+||+-+|-
T Consensus 96 ~~~~r~~f~~~~~~~~~~~g~DGiDiD~ 123 (321)
T 3ian_A 96 KKSQESDFVNEIIRLVDTYGFDGLDIDL 123 (321)
T ss_dssp CGGGHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHhCCCeEEEec
Confidence 1233677888888888899999999995
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=81.22 E-value=2.5 Score=33.70 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=34.8
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vi 107 (413)
-+.+.+-++.+.++|+.+||+.|=+. + +++++.|+++||+|+
T Consensus 68 ~~~v~~~v~e~~~~g~k~v~~~~G~~----------------------~--~e~~~~a~~~Girvv 109 (122)
T 3ff4_A 68 PQNQLSEYNYILSLKPKRVIFNPGTE----------------------N--EELEEILSENGIEPV 109 (122)
T ss_dssp HHHHGGGHHHHHHHCCSEEEECTTCC----------------------C--HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCC----------------------h--HHHHHHHHHcCCeEE
Confidence 57888899999999999999987210 1 488899999999988
|
| >1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B* | Back alignment and structure |
|---|
Probab=81.13 E-value=2.9 Score=42.04 Aligned_cols=122 Identities=9% Similarity=0.094 Sum_probs=74.8
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCC-------CCCCCHHHHHHHHHHHHHcCCEEEEEE-cc
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN-------SSYGSEHLLKALLHKMKQHKVRAMADI-VI 112 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id-------~~~Gt~~~~~~Lv~~~h~~Gi~VilD~-V~ 112 (413)
..+.|.+.||.++.+++|.+++..-=. ..+.|.+..|=.+- ..+=|.+|++++|+-|.++||+||-.+ ++
T Consensus 166 ~~~~ik~~id~ma~~KlN~lh~HltDd--q~wr~e~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~P 243 (507)
T 1now_A 166 PVKIILKTLDAMAFNKFNVLHWHIVDD--QSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTP 243 (507)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCS--SCCCBCCSSCHHHHHHHSSSTTSCBCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeccC--ccceeeccchhhhhcccCcCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCc
Confidence 488899999999999999999865311 12333332211110 122279999999999999999999777 57
Q ss_pred ccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhc
Q 015125 113 NHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTV 185 (413)
Q Consensus 113 NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~ 185 (413)
.|+..-. . .| ++.. +...+.. .+ ......||..+|++.+++.+++...++-|
T Consensus 244 GH~~a~~---~-~~-------p~L~----~~~~~~~-~~-----~~~~~~l~p~~~~t~~fl~~v~~Ev~~lF 295 (507)
T 1now_A 244 GHTLSWG---K-GQ-------KDLL----TPCYSRQ-NK-----LDSFGPINPTLNTTYSFLTTFFKEISEVF 295 (507)
T ss_dssp SSCTTHH---H-HS-------TTCE----EECCC----------CCSEEEECTTCHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHH---H-hC-------HHhc----ccCCCCC-Cc-----CCCCcccCCCcHHHHHHHHHHHHHHHHhC
Confidence 8877410 0 01 0110 0000000 00 00112388889999999999988887544
|
| >1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase (glucosidase); 1.90A {Streptomyces plicatus} SCOP: c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A 1c93_A | Back alignment and structure |
|---|
Probab=80.80 E-value=4.7 Score=36.87 Aligned_cols=46 Identities=11% Similarity=-0.005 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEeecccCCC-------------cHHHHHHHHHhhCC
Q 015125 167 QHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY-------------SAKYVKEYIEGARP 212 (413)
Q Consensus 167 ~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i-------------~~~~~~~~~~~~~~ 212 (413)
+++-|+.+++.+..+++++|+||+=+|-=..- -..+++++.+++..
T Consensus 104 s~~~r~~f~~s~~~~~~~~~fDGiDiDwE~p~~~~~g~~~~d~~~~~~ll~eLr~~l~~ 162 (271)
T 1edt_A 104 SQQAASAFAKQLSDAVAKYGLDGVDFDDEYAEYGNNGTAQPNDSSFVHLVTALRANMPD 162 (271)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEECSSCCTTGGGCCCCCSSHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEecccCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Confidence 58889999999988889999999999953211 13467777777754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 413 | ||||
| d1ht6a2 | 347 | c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hor | 4e-57 | |
| d1gcya2 | 357 | c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan m | 6e-52 | |
| d1mxga2 | 361 | c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeo | 2e-40 | |
| d2d3na2 | 394 | c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillu | 1e-31 | |
| d1hvxa2 | 393 | c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillu | 1e-27 | |
| d1e43a2 | 393 | c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera | 4e-25 | |
| d1hx0a2 | 403 | c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus s | 4e-25 | |
| d1jaea2 | 378 | c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mea | 8e-25 | |
| d1ud2a2 | 390 | c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillu | 2e-23 | |
| d1g94a2 | 354 | c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoa | 2e-22 | |
| d1ht6a1 | 57 | b.71.1.1 (A:348-404) Plant alpha-amylase {Barley ( | 3e-21 | |
| d1avaa1 | 57 | b.71.1.1 (A:347-403) Plant alpha-amylase {Barley ( | 3e-19 | |
| d1ua7a2 | 344 | c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillu | 1e-14 | |
| d2aaaa2 | 381 | c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill | 1e-13 | |
| d1j0ha3 | 382 | c.1.8.1 (A:124-505) Neopullulanase, central domain | 1e-13 | |
| d2guya2 | 381 | c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill | 2e-13 | |
| d1wzaa2 | 409 | c.1.8.1 (A:28-436) Bacterial alpha-amylase {Haloth | 4e-13 | |
| d3bmva4 | 406 | c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase | 2e-12 | |
| d1wzla3 | 382 | c.1.8.1 (A:121-502) Maltogenic amylase, central do | 8e-12 | |
| d1h3ga3 | 422 | c.1.8.1 (A:96-517) Cyclomaltodextrinase, central d | 2e-11 | |
| d1ji1a3 | 432 | c.1.8.1 (A:123-554) Maltogenic amylase, central do | 2e-11 | |
| d1qhoa4 | 407 | c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase | 4e-11 | |
| d1g5aa2 | 554 | c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysacc | 2e-10 | |
| d1ea9c3 | 382 | c.1.8.1 (C:122-503) Maltogenic amylase, central do | 8e-10 | |
| d1lwha2 | 391 | c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Ther | 9e-10 | |
| d1iv8a2 | 653 | c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase | 3e-09 | |
| d1m53a2 | 478 | c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Kle | 3e-09 | |
| d1m7xa3 | 396 | c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enz | 4e-09 | |
| d1eh9a3 | 400 | c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrol | 1e-08 | |
| d1uoka2 | 479 | c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus | 2e-08 | |
| d1bf2a3 | 475 | c.1.8.1 (A:163-637) Isoamylase, central domain {Ps | 9e-08 | |
| d2bhua3 | 420 | c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydro | 2e-07 | |
| d1r7aa2 | 434 | c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobac | 7e-05 | |
| d1gjwa2 | 572 | c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga | 0.002 |
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Score = 189 bits (479), Expect = 4e-57
Identities = 160/347 (46%), Positives = 217/347 (62%), Gaps = 17/347 (4%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES K W+ + KV DI+ +G T VWLPP +HS + EGY+P LY ++
Sbjct: 2 QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDID 61
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVT 142
+S YG+ LK+L+ + V+A+ADIVINHR + G Y ++G
Sbjct: 62 ASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGP 121
Query: 143 SCTGGLGNG--------STGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
TG +F P+IDH V++++ WL WL++ +GF +R DF
Sbjct: 122 HMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDF 181
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWIDGTG---Q 250
ARGYS + K YI+G P +V E WD+ G +Y+QD+HRQ ++NW+D G
Sbjct: 182 ARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAAS 241
Query: 251 LSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPF 310
FDFTTKGIL AV+G+ WRL D QGK PGVMGWWP++AVTF+DNHDTGSTQA WPF
Sbjct: 242 AGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPF 301
Query: 311 PSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQ 357
PS+ +M+GYAYIL HPGIP +FYDHF++WG +QI L+ +R++
Sbjct: 302 PSDKVMQGYAYILTHPGIPCIFYDHFFNWGF--KDQIAALVAIRKRN 346
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Score = 175 bits (445), Expect = 6e-52
Identities = 99/371 (26%), Positives = 151/371 (40%), Gaps = 34/371 (9%)
Query: 9 DETNQQTDLGAVIRNGREILFQGFNWESCK---HDWWRNLERKVPDISKSGFTSVWLPPA 65
D+ + + G EI+ QGF+W + +DW+ L ++ I+ GF+++W+P
Sbjct: 1 DQAGKSPN-AVRYHGGDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVP 59
Query: 66 ----------THSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115
+ S EGY + ++ N YGS+ L+ + V+ + D+V NH
Sbjct: 60 WRDFSSWSDGSKSGGGEGYFWHD-FNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNH- 117
Query: 116 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDII 175
+G+ K W G +++ V
Sbjct: 118 --MNRGYPDKEINLPAGQGFWRNDCADPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFR 175
Query: 176 AWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARP-IFSVGEYWDSCNYNSHGLDYNQ 234
LR+ G FRFDF RGY+ + V ++ + F VGE W + + N
Sbjct: 176 DEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNT 235
Query: 235 DSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVT 294
S +Q I +W D FDF K +Q + + P W AVT
Sbjct: 236 ASWQQIIKDWSDR--AKCPVFDFALKERMQNGSIADWKHGLNGNPDP-----RWREVAVT 288
Query: 295 FLDNHDTGST------QAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIV 348
F+DNHDTG + Q HW I + YAYIL PG P V++DH YDWG + I
Sbjct: 289 FVDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGY--GDFIR 346
Query: 349 KLMDVRRQQDI 359
+L+ VRR +
Sbjct: 347 QLIQVRRAAGV 357
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Score = 145 bits (366), Expect = 2e-40
Identities = 76/374 (20%), Positives = 144/374 (38%), Gaps = 52/374 (13%)
Query: 27 ILFQGFNWESCK-HDWWRNLERKVPDISKSGFTSVWLPPATHSFAPE---GYLPQNLYSL 82
++ Q F W+ WW ++ K+P+ ++G +++WLPP + + GY P + + L
Sbjct: 11 VIMQAFYWDVPGGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDL 70
Query: 83 ---------NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT---QGHGGKYNRYD 130
+ +GS+ L L+ + ++ +AD+VINHR G G Y D
Sbjct: 71 GEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTD 130
Query: 131 GIPLSWDEHA--VTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTV--- 185
++ ++ + F G P+I H + + + + +
Sbjct: 131 FSKVASGKYTANYLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSI 190
Query: 186 GFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWI 245
GF +RFD+ +GY A V++++ + + + +
Sbjct: 191 GFDGWRFDYVKGYGAWVVRDWLNWWGGWAVGEYWDTNVDALLSWAYESGAKV-------- 242
Query: 246 DGTGQLSAAFDFTTKGILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGST 304
FDF + EA L A V+ P +AVTF+ NHDT
Sbjct: 243 ---------FDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDII 293
Query: 305 QAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSS 364
+P YA+IL + G P +FY F +W + ++++ L+ + + S
Sbjct: 294 WNKYP--------AYAFILTYEGQPVIFYRDFEEWLN--KDKLINLIWIHDH---LAGGS 340
Query: 365 IKILEAQSNLYSAI 378
I+ ++ +
Sbjct: 341 TTIVYYDNDELIFV 354
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Score = 122 bits (306), Expect = 1e-31
Identities = 79/399 (19%), Positives = 137/399 (34%), Gaps = 80/399 (20%)
Query: 27 ILFQGFNWESCK-HDWWRNLERKVPDISKSGFTSVWLPPATHSFAPE--GYLPQNLYSL- 82
+ Q F W + W L ++ G T+VW+PPA + GY +LY L
Sbjct: 4 TMMQYFEWYLPNDGNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLG 63
Query: 83 --------NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG----------------- 117
+ YG+ L+A + +K + ++ D+V+NH+ G
Sbjct: 64 EFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNR 123
Query: 118 ----------------TTQGHGGKYNRYDGIPLSWD---------EHAVTSCTGGLGNGS 152
G G ++ + +D + G G
Sbjct: 124 NQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAW 183
Query: 153 TGDN--------FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVK 204
+ + +ID V ++ W W NT+G FR D + + +
Sbjct: 184 DWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKYSFTR 243
Query: 205 EYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQ 264
++I + N + + I N++ T + FD L
Sbjct: 244 DWIN---------HVRSATGKNMFAVAEFWKNDLGAIENYLQKTNWNHSVFDVPLHYNLY 294
Query: 265 EAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPS-NHIMEGYAYI 322
A K G + +R+ + PS AVTF+DNHD+ +A F YA
Sbjct: 295 NASKSGGNYDMRNIFNGTV--VQRHPSHAVTFVDNHDSQPEEALESFVEEWFKPLAYALT 352
Query: 323 LMH-PGIPSVFYDHFYDWGD----SIHNQIVKLMDVRRQ 356
L G PSVFY +Y ++ ++I +++ R++
Sbjct: 353 LTREQGYPSVFYGDYYGIPTHGVPAMRSKIDPILEARQK 391
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 111 bits (277), Expect = 1e-27
Identities = 82/407 (20%), Positives = 138/407 (33%), Gaps = 91/407 (22%)
Query: 23 NGREILFQGFNWESCK-HDWWRNLERKVPDISKSGFTSVWLPPATHS--FAPEGYLPQNL 79
+ Q F W W + + ++S G T++WLPPA + GY +L
Sbjct: 3 PFNGTMMQYFEWYLPDDGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDL 62
Query: 80 YSL---------NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ---------- 120
Y L + YG++ + ++ AD+V +H+ G
Sbjct: 63 YDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVN 122
Query: 121 -----------------------GHGGKYNRYDGIPLSWD----------------EHAV 141
G G Y+ + +D
Sbjct: 123 PSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIG 182
Query: 142 TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAK 201
+ + + ++ ++D V ++ +W +W NT FR D +
Sbjct: 183 KAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIKFS 242
Query: 202 YVKEYIE-----GARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFD 256
+ +++ +P+F+VGEYW ++ N+I T + FD
Sbjct: 243 FFPDWLSYVRSQTGKPLFTVGEYWSY--------------DINKLHNYIMKTNGTMSLFD 288
Query: 257 FTTKGILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDT--GSTQAHWPFPSN 313
A K G + +R +M P+ AVTF+DNHDT G W P
Sbjct: 289 APLHNKFYTASKSGGTFDMRTLMTN--TLMKDQPTLAVTFVDNHDTEPGQALQSWVDPWF 346
Query: 314 HIMEGYAYILM-HPGIPSVFYDHFYDWGD----SIHNQIVKLMDVRR 355
+ YA+IL G P VFY +Y S+ ++I L+ RR
Sbjct: 347 KPL-AYAFILTRQEGYPCVFYGDYYGIPQYNIPSLKSKIDPLLIARR 392
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Score = 103 bits (258), Expect = 4e-25
Identities = 74/401 (18%), Positives = 140/401 (34%), Gaps = 82/401 (20%)
Query: 27 ILFQGFNWESCK-HDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSL- 82
L Q F W + W+ L+ +S G T+VW+PPA + GY P +LY L
Sbjct: 4 TLMQYFEWYTPNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLG 63
Query: 83 --------NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ-------------- 120
+ YG++ L+ + + V+ D+V+NH+ G
Sbjct: 64 EFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANR 123
Query: 121 -------------------GHGGKYNRYDGIPLSWD----------------EHAVTSCT 145
G G Y+ + +D +
Sbjct: 124 NQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKAWD 183
Query: 146 GGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKE 205
+ + + ++ ++D+ V + W W N + FR D A+ ++++
Sbjct: 184 WEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSFLRD 243
Query: 206 YIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQE 265
+++ + + ++ ++ N+++ T + FD LQ
Sbjct: 244 WVQ---------AVRQATGKEMFTVAEYWQNNAGKLENYLNKTSFNQSVFDVPLHFNLQA 294
Query: 266 AV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIME-GYAYIL 323
A +G + +R + P ++VTF+DNHDT Q+ YA+IL
Sbjct: 295 ASSQGGGYDMRKLLNGTV--VSKHPLKSVTFVDNHDTQPGQSLESTVQTWFKPLAYAFIL 352
Query: 324 MH-PGIPSVFYDHFYDWG-------DSIHNQIVKLMDVRRQ 356
G P VFY Y ++ ++I ++ R+Q
Sbjct: 353 TRESGYPQVFYGDMYGTKGDSQREIPALKHKIEPILKARKQ 393
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 103 bits (258), Expect = 4e-25
Identities = 61/357 (17%), Positives = 111/357 (31%), Gaps = 48/357 (13%)
Query: 23 NGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAP--------EGY 74
+GR + F W W + GF V + P + E Y
Sbjct: 8 SGRTSIVHLFEWR-----WVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERY 62
Query: 75 LPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGG---------- 124
P + Y L + G+E+ + ++ + VR D VINH G+ G
Sbjct: 63 QPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNP 121
Query: 125 KYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDN--------FHGVPNIDHTQHFVRKDIIA 176
+ +P S + C G + ++ G+ ++ + +VR I
Sbjct: 122 GNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIAD 181
Query: 177 WLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDS 236
+L L + G FR D ++ +K ++ + + S + +
Sbjct: 182 YLNKLIDI-GVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEVIDLGGE 240
Query: 237 HRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ-FWRLRDAQGKPPGVMGWWPSRAVTF 295
+ +F L V+ ++ + G RA+ F
Sbjct: 241 AIKS-----SEYFGNGRVTEFKYGAKLGTVVRKWSGEKMSYLKNWGEGWGFMPSDRALVF 295
Query: 296 LDNHDT------GSTQAHWPFPSNHIMEGYAYILMHP-GIPSVFYDHFYDWGDSIHN 345
+DNHD G + + + ++L HP G V Y W + N
Sbjct: 296 VDNHDNQRGHGAGGSSILTFWDARLYKIAVGFMLAHPYGFTRVMSS--YRWARNFVN 350
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Score = 102 bits (255), Expect = 8e-25
Identities = 58/336 (17%), Positives = 99/336 (29%), Gaps = 32/336 (9%)
Query: 22 RNGREILFQGFNWESCKHDWWRNLERKVPD-ISKSGFTSVWLPPATHSFAPEG------Y 74
+GR + F W+ W ++ + + GF V + P +G Y
Sbjct: 7 ASGRNSIVHLFEWK------WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERY 60
Query: 75 LPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ------GHGGKYNR 128
P + Y +N+ G E + + VR D VINH G
Sbjct: 61 QPVS-YIINTRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMN 119
Query: 129 YDGIPLSWDEHAVTSCTGGLGNG--STGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG 186
Y +P + + G+ +++ +VR +I ++ + + G
Sbjct: 120 YPAVPYGSGDFHSPCEVNNYQDADNVRNCELVGLRDLNQGSDYVRGVLIDYMNHMIDL-G 178
Query: 187 FQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWID 246
FR D A+ S + G + + + + D + D + I
Sbjct: 179 VAGFRVDAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQ--EVIDLGGEAISKNEY 236
Query: 247 GTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQA 306
F F Q L + P AV F+DNHD T
Sbjct: 237 TGFGCVLEFQFGVSLGNAFQGGNQLKNLANWG---PEWGLLEGLDAVVFVDNHDNQRTGG 293
Query: 307 HWPF---PSNHIMEGYAYILMHP-GIPSVFYDHFYD 338
A++L HP G + +
Sbjct: 294 SQILTYKNPKPYKMAIAFMLAHPYGTTRIMSSFDFT 329
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} Length = 390 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Score = 98.6 bits (244), Expect = 2e-23
Identities = 72/394 (18%), Positives = 133/394 (33%), Gaps = 75/394 (19%)
Query: 27 ILFQGFNWESCK-HDWWRNLERKVPDISKSGFTSVWLPPAT--HSFAPEGYLPQNLYSL- 82
+ Q + W W L +S +G T++W+PPA +S A GY +LY L
Sbjct: 6 TMMQYYEWHLENDGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLG 65
Query: 83 --------NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG------TTQGHGGKYNR 128
+ YG++ L+ + +K + + D+V+NH++G NR
Sbjct: 66 EFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNR 125
Query: 129 YDGIPLSWDEHAVTSCTGGLGNGSTGDN-------------------------------- 156
+ I ++ A T N + D
Sbjct: 126 WQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWR 185
Query: 157 ---------FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYI 207
+ NID + V+ ++ W W + + +R D + Y +++
Sbjct: 186 VDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWYTSDWV 245
Query: 208 EGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV 267
+ + + + + ++D + FD A
Sbjct: 246 R---------HQRNEADQDLFVVGEYWKDDVGALEFYLDEMNWEMSLFDVPLNYNFYRAS 296
Query: 268 KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSN-HIMEGYAYILMH- 325
+ ++ P AVTF+DNHDT ++ + ++ YA IL
Sbjct: 297 QQGGSY-DMRNILRGSLVEAHPMHAVTFVDNHDTQPGESLESWVADWFKPLAYATILTRE 355
Query: 326 PGIPSVFYDHFY----DWGDSIHNQIVKLMDVRR 355
G P+VFY +Y D + + I +L+D R+
Sbjct: 356 GGYPNVFYGDYYGIPNDNISAKKDMIDELLDARQ 389
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Score = 95.7 bits (237), Expect = 2e-22
Identities = 55/331 (16%), Positives = 100/331 (30%), Gaps = 45/331 (13%)
Query: 30 QGFNWESCKHDWWRNLERKVPD-ISKSGFTSVWLPPATHSFAP----EGYLPQNLYSLNS 84
F W W+++ ++ + G+ +V + P Y P + Y L S
Sbjct: 7 HLFEWN------WQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVS-YELQS 59
Query: 85 SYGSEHLLKALLHKMKQHKVRAMADIVINH---RVGTTQGHGGKYNRYDGIPLSWDEHAV 141
G+ ++++ V D +INH GT N+ I D H
Sbjct: 60 RGGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQDFHES 119
Query: 142 TSCTGG----LGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARG 197
+ G+ ++D ++V+ I A++ L+ + FRFD ++
Sbjct: 120 CTINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYINDLQAIG-VKGFRFDASKH 178
Query: 198 YSAKYVKEYIEGARP-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFD 256
+A ++ + E D +Y +
Sbjct: 179 VAASDIQSLMAKVNGSPVVFQEVIDQGGEAVGASEYL----------------STGLVTE 222
Query: 257 FTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDT-----GSTQAHWPFP 311
F L + G+ G S AV F+DNHD G+
Sbjct: 223 FKYSTELGNTFRNGSLAWLSNFGE--GWGFMPSSSAVVFVDNHDNQRGHGGAGNVITFED 280
Query: 312 SNHIMEGYAYILMHP-GIPSVFYDHFYDWGD 341
++L +P G P V + +
Sbjct: 281 GRLYDLANVFMLAYPYGYPKVMSSYDFHGDT 311
|
| >d1ht6a1 b.71.1.1 (A:348-404) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} Length = 57 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Score = 84.4 bits (209), Expect = 3e-21
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 359 IHSRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCP--AGKEWTLATSGHKYAVWHK 413
I + S++KIL + + Y A I KV +KIG + + G+ YAVW K
Sbjct: 1 ITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIPAGFVTSAHGNDYAVWEK 57
|
| >d1avaa1 b.71.1.1 (A:347-403) Plant alpha-amylase {Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId: 4513]} Length = 57 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId: 4513]
Score = 79.0 bits (195), Expect = 3e-19
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 360 HSRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCP--AGKEWTLATSGHKYAVWHK 413
H+ S ++I+EA ++LY A I KV +K+G + +A G+ YAVW K
Sbjct: 1 HNESKLQIIEADADLYLAEIDGKVIVKLGPRYDVGNLIPGGFKVAAHGNDYAVWEK 56
|
| >d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus subtilis [TaxId: 1423]
Score = 72.3 bits (176), Expect = 1e-14
Identities = 55/325 (16%), Positives = 100/325 (30%), Gaps = 53/325 (16%)
Query: 30 QGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHS-----------FAPEGYLPQN 78
+NW + L+ + DI +G+T++ P Y P +
Sbjct: 10 HAWNWS------FNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTS 63
Query: 79 LYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDE 138
N G+E K + +++ ++ + D VINH TT + N IP
Sbjct: 64 YQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINH---TTFDYAAISNEVKSIPNWTHG 120
Query: 139 HAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 198
+ + T ++ G+ + + V+ + +L N G FRFD A+
Sbjct: 121 NTQIKNWSDRWDV-TQNSLLGLYDWNTQNTQVQSYLKRFLERALND-GADGFRFDAAKHI 178
Query: 199 SAKYVKEY-------IEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQL 251
Y I F GE R + +
Sbjct: 179 ELPDDGSYGSQFWPNITNTSAEFQYGEILQDSA--------------SRDAAYANYMDVT 224
Query: 252 SAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDT--GSTQAHWP 309
++ + + + L+ G A + VT++++HDT +
Sbjct: 225 ASNYGHSIRSALKNRNLGVSNISHYAS-------DVSADKLVTWVESHDTYANDDEESTW 277
Query: 310 FPSNHIMEGYAYILMHP-GIPSVFY 333
+ I G+A I P F
Sbjct: 278 MSDDDIRLGWAVIASRSGSTPLFFS 302
|
| >d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus niger, acid amylase [TaxId: 5061]
Score = 69.7 bits (169), Expect = 1e-13
Identities = 59/347 (17%), Positives = 113/347 (32%), Gaps = 49/347 (14%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSF--------APEGYLPQNLYSLNSSYGSEHLLK 93
W+ + + I GFT++W+ P T A GY Q +Y +NS++G+ LK
Sbjct: 42 WQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLK 101
Query: 94 ALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTG-----GL 148
+L + + M D+V +H G+ Y+ +D S H T +
Sbjct: 102 SLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTMV 161
Query: 149 GNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIE 208
+ GD +P++D T+ VR W+ L + R D + Y +
Sbjct: 162 EDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNK 221
Query: 209 GARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK 268
+ +G + +++ + ++ + F + +
Sbjct: 222 AS--------GVYCVGEIDNGNPASDCPYQKVLDGVLNYPIYWQLLYAFESSSGSISNLY 273
Query: 269 GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGI 328
+ P+ F++NHD A + + +YI + GI
Sbjct: 274 NMIKSVASDC--------SDPTLLGNFIENHDN-PRFAKYTSDYSQAKNVLSYIFLSDGI 324
Query: 329 PSVFY-------------------DHFYDWGDSIHNQIVKLMDVRRQ 356
P V+ YD ++ I +R+
Sbjct: 325 PIVYAGEEQHYAGGKVPYNREATWLSGYDTSAELYTWIATTNAIRKL 371
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Score = 69.3 bits (168), Expect = 1e-13
Identities = 38/294 (12%), Positives = 86/294 (29%), Gaps = 13/294 (4%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101
+ + + + G T ++L P S + Y + + ++ +G + LK L+ + +
Sbjct: 52 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 111
Query: 102 HKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLS--WDEHAVTSCTGGLGNGSTGDNFHG 159
+R M D V NH + + + H T N T
Sbjct: 112 KGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQ 171
Query: 160 VPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEY 219
+P ++ V++ ++ + +R D A ++ +E+ + + + Y
Sbjct: 172 MPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALKP-DVY 230
Query: 220 WDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQG 279
++ D + A + + +
Sbjct: 231 ILGEIWHDAMPWLRGDQFDAVMNYPFTDGVLRFFAKEEISARQFANQMMHVLHS------ 284
Query: 280 KPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFY 333
A L +HDT + + + L G P ++Y
Sbjct: 285 ----YPNNVNEAAFNLLGSHDTSRILTVCGGDIRKVKLLFLFQLTFTGSPCIYY 334
|
| >d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Score = 68.5 bits (166), Expect = 2e-13
Identities = 66/349 (18%), Positives = 114/349 (32%), Gaps = 53/349 (15%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSF--------APEGYLPQNLYSLNSSYGSEHLLK 93
W+ + K+ I GFT++W+ P T A GY Q++YSLN +YG+ LK
Sbjct: 42 WQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLK 101
Query: 94 ALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGST 153
AL + + + M D+V NH G Y+ + H
Sbjct: 102 ALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQV 161
Query: 154 -----GDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIE 208
GDN +P++D T+ V+ + W+ L + R D + + Y +
Sbjct: 162 EDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNK 221
Query: 209 GARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK 268
++ +GE D + D ++ L A K
Sbjct: 222 A-AGVYCIGEVLDGDPAYTCPYQNVMDGV-----------------LNYPIYYPLLNAFK 263
Query: 269 GQFWRLRDAQGKPPGVMGWWPS--RAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHP 326
+ D V P TF++NHD ++ + A+I+++
Sbjct: 264 STSGSMDDLYNMINTVKSDCPDSTLLGTFVENHDNPRFASYTNDIALAKN-VAAFIILND 322
Query: 327 GIPSVFY-------------------DHFYDWGDSIHNQIVKLMDVRRQ 356
GIP ++ Y ++ I +R
Sbjct: 323 GIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASANAIRNY 371
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} Length = 409 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Score = 68.2 bits (165), Expect = 4e-13
Identities = 55/313 (17%), Positives = 98/313 (31%), Gaps = 39/313 (12%)
Query: 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR 105
+ I+ G +WL P S + GY + Y +N YG+ L+ Q ++
Sbjct: 38 DGDPETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIK 97
Query: 106 AMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFH------- 158
+ D+ INH + + A G +H
Sbjct: 98 VIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMY 157
Query: 159 ------GVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARG-----------YSAK 201
G+P++++ V++ +I ++ G FR D A +
Sbjct: 158 YGYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQ-GVDGFRLDGAMHIFPPAQYDKNFTWWE 216
Query: 202 YVKEYIEGARPIFSVGEYW-DSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTK 260
++ IE +P++ VGE W S + + ++ + T + F F K
Sbjct: 217 KFRQEIEEVKPVYLVGEVWDISETVAPYFKYGFDSTFNFKLAEAVIATAKAGFPFGFNKK 276
Query: 261 GILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYA 320
+ G +G+ FL NHD N +
Sbjct: 277 -------------AKHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQDRNKARVAAS 323
Query: 321 YILMHPGIPSVFY 333
L PG P ++Y
Sbjct: 324 IYLTLPGNPFIYY 336
|
| >d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Score = 66.3 bits (160), Expect = 2e-12
Identities = 45/338 (13%), Positives = 108/338 (31%), Gaps = 34/338 (10%)
Query: 52 ISKSGFTSVWLPPATH-------------SFAPEGYLPQNLYSLNSSYGSEHLLKALLHK 98
++ G T++W+P S + GY ++ N +GS + L++
Sbjct: 66 LTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINT 125
Query: 99 MKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFH 158
H ++ + D NH ++ T+ T G + G +F
Sbjct: 126 AHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFHHYGGTDFS 185
Query: 159 GVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGE 218
+ + F D+ + + + + + + +
Sbjct: 186 SYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWLDMGIDGIRLDAVKHMPFGWQKNFMD 245
Query: 219 YWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLR--D 276
S ++ ++ + N + DF +++ + + D
Sbjct: 246 SILSYRPVFTFGEWFLGTNEIDVNNTYFANESGMSLLDFRFSQKVRQVFRDNTDTMYGLD 305
Query: 277 AQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFY--- 333
+ + + + VTF+DNHD + + + + + A+ L G+P+++Y
Sbjct: 306 SMIQSTASDYNFINDMVTFIDNHDMD--RFYNGGSTRPVEQALAFTLTSRGVPAIYYGTE 363
Query: 334 -------DHF-------YDWGDSIHNQIVKLMDVRRQQ 357
D + ++ + +N I KL +R+
Sbjct: 364 QYMTGNGDPYNRAMMTSFNTSTTAYNVIKKLAPLRKSN 401
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Score = 63.9 bits (154), Expect = 8e-12
Identities = 36/295 (12%), Positives = 87/295 (29%), Gaps = 15/295 (5%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101
+ + ++P + + G T+++ P S + Y + +++ +G + L+ + +
Sbjct: 52 LKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHR 111
Query: 102 HKVRAMADIVINHRVGTTQGHGGKYNRYDGI---PLSWDEHAVTSCTGGLGNGSTGDNFH 158
++ + D V NH + + + E S T +
Sbjct: 112 RGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVP 171
Query: 159 GVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGE 218
+P + V++ + R+ G +R D A + +E+ + +
Sbjct: 172 AMPKLRTENPEVKEYLFDVARFWMEQ-GIDGWRLDVANEVDHAFWREFRRLVKSLNPDAL 230
Query: 219 YWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQ 278
+++ G + + + F G +
Sbjct: 231 IVGEIWHDASGWLMGDQFDSVMNYLFRE------SVIRFFATGEIHAERFDAELTRARML 284
Query: 279 GKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFY 333
G W LD+HDT + + + G P ++Y
Sbjct: 285 YPEQAAQGLW-----NLLDSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYY 334
|
| >d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} Length = 422 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclomaltodextrinase, central domain species: Flavobacterium sp. 92 [TaxId: 197856]
Score = 62.8 bits (151), Expect = 2e-11
Identities = 45/308 (14%), Positives = 87/308 (28%), Gaps = 19/308 (6%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHS----FAPEGYLPQNLYSLNSSYGSEHLLKALLH 97
R + I+ GFT +W P + ++ GY + Y ++ YGS L
Sbjct: 52 IRGTIDHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLST 111
Query: 98 KMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHA---------VTSCTGGL 148
+ ++ + + D+V++H +
Sbjct: 112 EARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRVAVQDPYAAQADS 171
Query: 149 GNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIE 208
N + G G+P+++ T V +I W G R D ++ EY
Sbjct: 172 ENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLTEYTR 231
Query: 209 GARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK 268
+ + + N+ T L + DF ++ A+
Sbjct: 232 RLMAEYPRLNMVGEEWSTRVPVVARWQRGKA---NFDGYTSHLPSLMDFPLVDAMRNALS 288
Query: 269 GQFWR---LRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMH 325
+ + P V F NHD + + +++
Sbjct: 289 KTGEENGLNEVYETLSLDYLYPEPQNLVLFGGNHDMARMFSAAGEDFDRWRMNLVFLMTM 348
Query: 326 PGIPSVFY 333
P IP +
Sbjct: 349 PRIPQFYS 356
|
| >d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} Length = 432 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]
Score = 62.8 bits (151), Expect = 2e-11
Identities = 47/316 (14%), Positives = 95/316 (30%), Gaps = 24/316 (7%)
Query: 42 WRNLERKVPDISKS-GFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100
+++K+ I K+ G ++L P + Y Q+ +++ ++G L+ L++ +
Sbjct: 68 LAGIDQKLGYIKKTLGANILYLNPIFKAPTNHKYDTQDYMAVDPAFGDNSTLQTLINDIH 127
Query: 101 QH----KVRAMADIVINHRVGTTQ-----GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNG 151
K + D V NH + + Y+ W +
Sbjct: 128 STANGPKGYLILDGVFNHTGDSHPWFDKYNNFSSQGAYESQSSPWYNYYTFYTWPDSYAS 187
Query: 152 STGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGA- 210
G N N ++ VR I + T + D R +A+YV
Sbjct: 188 FLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRLDAAQYVDANGNNGS 247
Query: 211 -RPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTT-KGILQEAVK 268
+ + + + + W Q AA +F + E +
Sbjct: 248 DVTNHQIWSEFRNAVKGVNSNAAIIGEYWGNANPWTAQGNQWDAATNFDGFTQPVSEWIT 307
Query: 269 GQFWRLRDA-----------QGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIME 317
G+ ++ A +G + FL NHD
Sbjct: 308 GKDYQNNSASISTTQFDSWLRGTRANYPTNVQQSMMNFLSNHDITRFATRSGGDLWKTYL 367
Query: 318 GYAYILMHPGIPSVFY 333
+ + + G P+++Y
Sbjct: 368 ALIFQMTYVGTPTIYY 383
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} Length = 407 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Score = 62.0 bits (149), Expect = 4e-11
Identities = 54/361 (14%), Positives = 111/361 (30%), Gaps = 56/361 (15%)
Query: 42 WRNLERKVPDISKSGFTSVWLPP---------ATHSFAPEGYLPQNLYSLNSSYGSEHLL 92
+ +K+P + + G T++WL P T + GY ++ + +G+
Sbjct: 51 LEGVRQKLPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTF 110
Query: 93 KALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNR-----------------YDGIPLS 135
L++ Q+ ++ + D V NH G
Sbjct: 111 DTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDATKGYFHH 170
Query: 136 WDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195
+ + + D ++ + G R D
Sbjct: 171 NGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVAHGADGLRIDAV 230
Query: 196 RGYSAKYVKEYIEGAR---PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLS 252
+ +++ + K + IF VGE++ ++ L+ + + + +G
Sbjct: 231 KHFNSGFSKSLADKLYQKKDIFLVGEWYGDDPGTANHLEKVR---------YANNSGVNV 281
Query: 253 AAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPS 312
FD T Q + G + +TF+DNHD + +
Sbjct: 282 LDFDLNTVIRNVFGTFTQTMYDLNNMVNQTGNEYKYKENLITFIDNHDMSRFLSVNSNKA 341
Query: 313 NHIMEGYAYILMHPGIPSVFY----------DHF-------YDWGDSIHNQIVKLMDVRR 355
N + + A+IL G PS++Y D + +D + ++ L +RR
Sbjct: 342 N-LHQALAFILTSRGTPSIYYGTEQYMAGGNDPYNRGMMPAFDTTTTAFKEVSTLAGLRR 400
Query: 356 Q 356
Sbjct: 401 N 401
|
| >d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} Length = 554 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Score = 60.0 bits (144), Expect = 2e-10
Identities = 40/364 (10%), Positives = 94/364 (25%), Gaps = 37/364 (10%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE---GYLPQNLYSLNSSYGSEHLLKALLHK 98
+ L+ K+P + G T + L P + GY + +N + G+ L+ ++
Sbjct: 112 LKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAA 171
Query: 99 MKQHKVRAMADIVINH-----------RVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGG 147
+ + + A+ D + NH G Y D + +
Sbjct: 172 LHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPD 231
Query: 148 LGNGSTGD---------NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 198
G F+ + + +A +G R D
Sbjct: 232 QHPGGFSQLEDGRWVWTTFNSFQWDLNYSNPWVFRAMAGEMLFLANLGVDILRMDAVAFI 291
Query: 199 SAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHR--QRIINWIDGTGQLSAAFD 256
+ + + + + + + ++ +++ +I
Sbjct: 292 WKQMGTSCENLPQAHALIRAFNAVMRIAAPAVFFKSEAIVHPDQVVQYIGQDECQIGYNP 351
Query: 257 FTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHD----------TGSTQA 306
+ + L A + + V ++ +HD
Sbjct: 352 LQMALLWNTLATREVNLLHQALTYRHNL--PEHTAWVNYVRSHDDIGWTFADEDAAYLGI 409
Query: 307 HWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIK 366
+ + V + + GD + + Q D H+ IK
Sbjct: 410 SGYDHRQFLNRFFVNRFDGSFARGVPFQYNPSTGDCRVSGTAAALVGLAQDDPHAVDRIK 469
Query: 367 ILEA 370
+L +
Sbjct: 470 LLYS 473
|
| >d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Score = 57.8 bits (138), Expect = 8e-10
Identities = 41/295 (13%), Positives = 85/295 (28%), Gaps = 14/295 (4%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101
+ + + +SK G +V+ P + Y ++ + ++ +G + LK L+ +
Sbjct: 50 LQGVIDHLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHE 109
Query: 102 HKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLS---WDEHAVTSCTGGLGNGSTGDNFH 158
+R + D V NH T + G+ T
Sbjct: 110 RGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIPTYDTFAFEP 169
Query: 159 GVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGE 218
+P ++ V++ ++ + G +R D A S ++ +E+ +
Sbjct: 170 LMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFRRVVKQANPDAY 229
Query: 219 YWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQ 278
+ S + + A DF I + A
Sbjct: 230 ILGEVWHESSIWLEGDQFDAVMNYPFTN------AVLDFFIHQIADAEKFSFMLGKQLA- 282
Query: 279 GKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFY 333
G LD+HDT + + + G P ++Y
Sbjct: 283 ----GYPRQASEVMFNLLDSHDTARLLTQADGDKRKMKLAVLFQFTYFGTPCIYY 333
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Score = 57.7 bits (138), Expect = 9e-10
Identities = 53/307 (17%), Positives = 94/307 (30%), Gaps = 31/307 (10%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101
+R L+ V + + G VWL P S + GY + YS + YGSE K ++
Sbjct: 22 FRGLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFKAEYGSEREFKEMIEAFHD 81
Query: 102 HKVRAMADIVINHRVGTT---QGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGST----- 153
++ + D+ I+H Q Y + ++
Sbjct: 82 SGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLE 141
Query: 154 -----GDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIE 208
F + + D + L +G FRFD A+ +
Sbjct: 142 DGRFYRGLFGPFSPDLNYDNPQVFDEMKRLVLHLLDMGVDGFRFDAAKHMRDTIEQNVRF 201
Query: 209 GARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV- 267
+ + + + + + + +F T ++EAV
Sbjct: 202 WKYFLSDLKGIFLAEIWAEARM-------------VDEHGRIFGYMLNFDTSHCIKEAVW 248
Query: 268 KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWP-FPSNHIMEGYAYILMHP 326
K L ++ + + P V F NHD + F I + + P
Sbjct: 249 KENTRVLIESIERAVIAKDYLP---VNFTSNHDMSRLASFEGGFSKEKIKLSISILFTLP 305
Query: 327 GIPSVFY 333
G+P VFY
Sbjct: 306 GVPLVFY 312
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 653 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Score = 56.9 bits (137), Expect = 3e-09
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHS--FAPEGYLPQNLYSLNSSYGSEHLLKALLHKM 99
+ ++ + G + ++L P + + GY + +N G E + L+
Sbjct: 16 FGDVIDNLWYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETA 75
Query: 100 KQHKVRAMADIVINH 114
+ + DIV NH
Sbjct: 76 HTIGLGIIQDIVPNH 90
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} Length = 478 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Score = 56.2 bits (134), Expect = 3e-09
Identities = 53/401 (13%), Positives = 101/401 (25%), Gaps = 58/401 (14%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHS-FAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100
R + K+ + G ++W+ P S GY N + YG+ +L+ +MK
Sbjct: 30 IRGIIEKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMK 89
Query: 101 QHKVRAMADIVINHRVGT------------------TQGHGGKYNRYDGIPLSWDEHAVT 142
+ +R M D+VINH GK N+ S+ +
Sbjct: 90 KRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAW 149
Query: 143 SCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS--- 199
G P+++ VR+D+ A LR+ + G RFD YS
Sbjct: 150 QKDAKSGQYYLHYFARQQPDLNWDNPKVREDLYAMLRFWLDK-GVSGMRFDTVATYSKIP 208
Query: 200 --------------------------AKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYN 233
+ + + + + GE + S
Sbjct: 209 GFPNLTPEQQKNFAEQYTMGPNIHRYIQEMNRKVLSRYDVATAGEIFGVPLDRSSQFFDR 268
Query: 234 QDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAV 293
+ + + + K + ++
Sbjct: 269 RRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFRQIISKM---DVTVGKYGWNTFFLDN 325
Query: 294 TFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDV 353
+ + L P ++ G + +
Sbjct: 326 HDNPRAVSHFGDDRPQWREASAKALATITLTQRATPFIYQ------GSELGMTNYPFRQL 379
Query: 354 RRQQDIHSRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCP 394
DI + + + + D V + D S P
Sbjct: 380 NEFDDIEVKGFWQDYVQSGKVTATEFLDNVRLTSRDNSRTP 420
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Score = 55.4 bits (132), Expect = 4e-09
Identities = 31/299 (10%), Positives = 69/299 (23%), Gaps = 11/299 (3%)
Query: 46 ERKVPDISKSGFTSVWLPPATHSFAPE--GYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103
++ VP GFT + L P GY P LY+ +G+ + +
Sbjct: 44 DQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAG 103
Query: 104 VRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNI 163
+ + D V H E + N + + +
Sbjct: 104 LNVILDWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGN 163
Query: 164 DHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSC 223
+ + + + R + + +E +E + +
Sbjct: 164 ALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQ 223
Query: 224 NYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPG 283
+ + G ++ + +K + K
Sbjct: 224 VSGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTF 283
Query: 284 VMGWWPSRAVT-----FLDNHDTGSTQAHWPFPSNHIMEG----YAYILMHPGIPSVFY 333
+ + + H S P + Y ++ PG +F
Sbjct: 284 GILYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFM 342
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Score = 54.3 bits (129), Expect = 1e-08
Identities = 43/302 (14%), Positives = 82/302 (27%), Gaps = 14/302 (4%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE--GYLPQNLYSLNSSYGSEHLLKALLHKM 99
+ + RK+ + G T++ + P GY LY++ +SYG + L+ +
Sbjct: 28 FEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEA 87
Query: 100 KQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHG 159
+ + + D+V NH G + + S
Sbjct: 88 HKKGLGVILDVVYNH----VGPEGNYMVKLGPYFSQKYKTPWGLTFNFDDAESDEVRKFI 143
Query: 160 VPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYI---EGARPIFSV 216
+ N+++ D + KY + I + P
Sbjct: 144 LENVEYWIKEYNVDGFRLDAVHAIIDTSPKHILEEIADVVHKYNRIVIAESDLNDPRVVN 203
Query: 217 GEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRD 276
+ N ++ +D S + G D K V +
Sbjct: 204 PKEKCGYNIDAQWVDDFHHSIHAYLTGERQGYYTDFGNLDDIVKSYKDVFVYDGKYSNFR 263
Query: 277 AQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIME-----GYAYILMHPGIPSV 331
+ V V ++ NHD + + A L+ P IP +
Sbjct: 264 RKTHGEPVGELDGCNFVVYIQNHDQVGNRGKGERIIKLVDRESYKIAAALYLLSPYIPMI 323
Query: 332 FY 333
F
Sbjct: 324 FM 325
|
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} Length = 479 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Score = 53.5 bits (127), Expect = 2e-08
Identities = 53/399 (13%), Positives = 111/399 (27%), Gaps = 53/399 (13%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHS-FAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100
R + K+ + + G +WL P S GY + + + +G+ LLH+M
Sbjct: 30 LRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMH 89
Query: 101 QHKVRAMADIVINHRVGTTQGHGGKYNRYDG------------------IPLSWDEHAVT 142
+ ++ M D+V+NH D + +
Sbjct: 90 ERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSGSAW 149
Query: 143 SCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKY 202
P+++ VR+D+ +++ G FR D S +
Sbjct: 150 QYDEMTDEYYLHLFSKKQPDLNWDNEKVRQDVYEMMKFWLE-KGIDGFRMDVINFISKEE 208
Query: 203 VKEYIEGARPIFSVGEYWDSCNYNSHGL------------------DYNQDSHRQRIINW 244
+E + G N H + + + +
Sbjct: 209 GLPTVETEEEGYVSGHKHFMNGPNIHKYLHEMNEEVLSHYDIMTVGEMPGVTTEEAKLYT 268
Query: 245 IDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGW-----WPSRAVTFLDNH 299
+ +L F F + + + W + +NH
Sbjct: 269 GEERKELQMVFQFEHMDLDSGEGGKWDVKPCSLLTLKENLTKWQKALEHTGWNSLYWNNH 328
Query: 300 DTGSTQAHWPFPSNHIMEG----YAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRR 355
D + + + +E + M G P ++ G+ I V+ +
Sbjct: 329 DQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYIYQ------GEEIGMTNVRFESIDE 382
Query: 356 QQDIHSRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCP 394
+DI + + K + + + +K D + P
Sbjct: 383 YRDIETLNMYKEKVMERGEDIEKVMQSIYIKGRDNARTP 421
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} Length = 475 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Score = 51.6 bits (122), Expect = 9e-08
Identities = 55/365 (15%), Positives = 104/365 (28%), Gaps = 55/365 (15%)
Query: 42 WRNLERKVPDISKSGFTSVWLPP--------------ATHSFAPEGYLPQNLYSLNSSYG 87
+ K ++ G T+V P + + GY+ +N +S + Y
Sbjct: 42 YYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRRYA 101
Query: 88 SEHL-------LKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHA 140
+A++ ++ D+V NH I
Sbjct: 102 YNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNH-TAEGGTWTSSDPTTATIYSWRGLDN 160
Query: 141 VTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS- 199
T GN DN N + + I+ L + NT+G FRFD A
Sbjct: 161 ATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGN 220
Query: 200 AKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQD----------------------SH 237
+ Y A + G +D+ + N ++ +
Sbjct: 221 SCLNGAYTASAPNCPNGGYNFDAADSNVAINRILREFTVRPAAGGSGLDLFAEPWAIGGN 280
Query: 238 RQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVM-----GWWPSRA 292
++ + G + + F + + E + +DA G P +
Sbjct: 281 SYQLGGFPQGWSEWNGLFRDSLRQAQNELGSMTIYVTQDANDFSGSSNLFQSSGRSPWNS 340
Query: 293 VTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMD 352
+ F+D HD + + + + + + Y G Y W + +D
Sbjct: 341 INFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDGG-----TSTNYSWDQGMSAGTGAAVD 395
Query: 353 VRRQQ 357
RR
Sbjct: 396 QRRAA 400
|
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Score = 50.1 bits (118), Expect = 2e-07
Identities = 42/302 (13%), Positives = 81/302 (26%), Gaps = 14/302 (4%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE---GYLPQNLYSLNSSYGSEHLLKALLHK 98
+R K+P + + G T++ + P +F + GY Y+ + YG L AL+
Sbjct: 33 YRAAAEKLPYLKELGVTAIQVMPL-AAFDGQRGWGYDGAAFYAPYAPYGRPEDLMALVDA 91
Query: 99 MKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFH 158
+ + D+V NH G + + Y +
Sbjct: 92 AHRLGLGVFLDVVYNHF-GPSGNYLSSYAPSYFTDRFSSAWGMGLDYAEPHMRRYVTGNA 150
Query: 159 GVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGE 218
+ D+ +R D ++ T + + + P
Sbjct: 151 RMWLRDYHFDGLRLDATPYMTDDSETHILTELAQEIHELGGTHLLLAEDHRNLPDLVTVN 210
Query: 219 YWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQ 278
+ D + + ++ + G A +G E +
Sbjct: 211 HLDGIWTDDFHHETRVTLTGEQEGYYAGYRGGAEALAYTIRRGWRYEGQFWAVKGEEHER 270
Query: 279 GKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPS-------NHIMEGYAYILMHPGIPSV 331
G P V + NHD + + A +L P P +
Sbjct: 271 GHPS--DALEAPNFVYCIQNHDQIGNRPLGERLHQSDGVTLHEYRGAAALLLTLPMTPLL 328
Query: 332 FY 333
F
Sbjct: 329 FQ 330
|
| >d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Sucrose phosphorylase species: Bifidobacterium adolescentis [TaxId: 1680]
Score = 42.4 bits (98), Expect = 7e-05
Identities = 30/299 (10%), Positives = 72/299 (24%), Gaps = 17/299 (5%)
Query: 43 RNLERKVPDISKSGFTSVWLPP--ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100
+++ + + V + P A G+ P + ++ GS + L
Sbjct: 20 KSMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVDERLGSWDDVAELSKTHN 79
Query: 101 QHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGV 160
M D ++NH + + S + + NG+T ++ G+
Sbjct: 80 -----IMVDAIVNH---MSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGI 131
Query: 161 PNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYW 220
F R + + Q D +Y+ +
Sbjct: 132 YRPRPGLPFTHYKFAGKTRLVWVSFTPQQVDIDTDSDKGWEYLMSIFDQMAASHVSYIRL 191
Query: 221 DSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGK 280
D+ Y + + + + ++ + + +
Sbjct: 192 DAVGYGAKEAGTSCFMTPKTFKLISRLREEGVKRGLEIL-------IEVHSYYKKQVEIA 244
Query: 281 PPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDW 339
+ + L TG + + + H GI +
Sbjct: 245 SKVDRVYDFALPPLLLHALSTGHVEPVAHWTDIRPNNAVTVLDTHDGIGVIDIGSDQLD 303
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 572 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Score = 37.7 bits (86), Expect = 0.002
Identities = 33/352 (9%), Positives = 81/352 (23%), Gaps = 42/352 (11%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHS-------FAPEGYLPQNLYSLNSSY-------- 86
+ + +P + G +++L P + AP Y +N L+ Y
Sbjct: 119 FFKMMLLLPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPF 178
Query: 87 GSEHLLKALLHKMKQHKVRAMADIVINH-----------------RVGTTQGHGGKYNRY 129
+ KA + +R + D +
Sbjct: 179 KVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRAE 238
Query: 130 DGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQD 189
+ DE + F PN+ Q + I +
Sbjct: 239 ELPFKVPDEDELEIIYNKENVKRHLKKFTLPPNLIDPQ--KWEKIKREEGN------ILE 290
Query: 190 FRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTG 249
+ + I +P + + + D ++ + +
Sbjct: 291 LIVKEFGIITPPGFSDLINDPQPTWDDVTFLRLYLDHPEASKRFLDPNQPPYVLYDVIKA 350
Query: 250 QLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWP 309
+ + A ++ + MG + + L + +
Sbjct: 351 SKFPGKEPNRELWEYLAGVIPHYQKKYGIDGARLDMGHALPKELLDLIIKNVKEYDPAFV 410
Query: 310 FPSNHIMEGYAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHS 361
+ + G + + + +I KL D+ + +
Sbjct: 411 MIAEELDMEKDKASKEAGYDVILGSSW--YFAGRVEEIGKLPDIAEELVLPF 460
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 413 | |||
| d1ht6a2 | 347 | Plant alpha-amylase {Barley (Hordeum vulgare), AMY | 100.0 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 100.0 | |
| d1mxga2 | 361 | Bacterial alpha-amylase {Archaeon Pyrococcus woese | 100.0 | |
| d1e43a2 | 393 | Bacterial alpha-amylase {Chimera (Bacillus amyloli | 100.0 | |
| d2d3na2 | 394 | Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: | 100.0 | |
| d1j0ha3 | 382 | Neopullulanase, central domain {Bacillus stearothe | 100.0 | |
| d2guya2 | 381 | Fungal alpha-amylases {Aspergillus oryzae, Taka-am | 100.0 | |
| d1ea9c3 | 382 | Maltogenic amylase, central domain {Bacillus sp., | 100.0 | |
| d2aaaa2 | 381 | Fungal alpha-amylases {Aspergillus niger, acid amy | 100.0 | |
| d1hvxa2 | 393 | Bacterial alpha-amylase {Bacillus stearothermophil | 100.0 | |
| d1h3ga3 | 422 | Cyclomaltodextrinase, central domain {Flavobacteri | 100.0 | |
| d1wzla3 | 382 | Maltogenic amylase, central domain {Thermoactinomy | 100.0 | |
| d3bmva4 | 406 | Cyclodextrin glycosyltransferase {Thermoanaerobact | 100.0 | |
| d1ua7a2 | 344 | Bacterial alpha-amylase {Bacillus subtilis [TaxId: | 100.0 | |
| d1lwha2 | 391 | 4-alpha-glucanotransferase {Thermotoga maritima [T | 100.0 | |
| d1qhoa4 | 407 | Cyclodextrin glycosyltransferase {Bacillus stearot | 100.0 | |
| d1wzaa2 | 409 | Bacterial alpha-amylase {Halothermothrix orenii [T | 100.0 | |
| d1jaea2 | 378 | Animal alpha-amylase {Yellow mealworm (Tenebrio mo | 100.0 | |
| d1g94a2 | 354 | Bacterial alpha-amylase {Pseudoalteromonas halopla | 100.0 | |
| d2bhua3 | 420 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1eh9a3 | 400 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1ji1a3 | 432 | Maltogenic amylase, central domain {Thermoactinomy | 100.0 | |
| d1m53a2 | 478 | Isomaltulose synthase PalI {Klebsiella sp., lx3 [T | 100.0 | |
| d1hx0a2 | 403 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 100.0 | |
| d1ud2a2 | 390 | Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta | 100.0 | |
| d1uoka2 | 479 | Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 13 | 100.0 | |
| d1g5aa2 | 554 | Amylosucrase {Neisseria polysaccharea [TaxId: 489] | 100.0 | |
| d1bf2a3 | 475 | Isoamylase, central domain {Pseudomonas amyloderam | 100.0 | |
| d1m7xa3 | 396 | 1,4-alpha-glucan branching enzyme, central domain | 100.0 | |
| d2fhfa5 | 563 | Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 | 100.0 | |
| d1r7aa2 | 434 | Sucrose phosphorylase {Bifidobacterium adolescenti | 100.0 | |
| d1gjwa2 | 572 | Maltosyltransferase {Thermotoga maritima [TaxId: 2 | 100.0 | |
| d1iv8a2 | 653 | Maltooligosyl trehalose synthase {Archaeon Sulfolo | 100.0 | |
| d1x1na1 | 523 | Amylomaltase MalQ {Potato (Solanum tuberosum) [Tax | 98.3 | |
| d1tz7a1 | 485 | Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363] | 98.06 | |
| d1zy9a2 | 348 | Alpha-galactosidase GalA catalytic domain {Thermot | 97.77 | |
| d1eswa_ | 500 | Amylomaltase MalQ {Thermus aquaticus [TaxId: 271]} | 97.59 | |
| d1ht6a1 | 57 | Plant alpha-amylase {Barley (Hordeum vulgare), AMY | 97.25 | |
| d1avaa1 | 57 | Plant alpha-amylase {Barley (Hordeum vulgare), see | 97.22 | |
| d2f2ha4 | 338 | Putative glucosidase YicI, domain 2 {Escherichia c | 97.2 | |
| d1wzla2 | 83 | Maltogenic amylase {Thermoactinomyces vulgaris, TV | 96.74 | |
| d1rh9a1 | 370 | Beta-mannanase {Tomato (Lycopersicon esculentum) [ | 96.56 | |
| d1ecea_ | 358 | Endocellulase E1 {Acidothermus cellulolyticus [Tax | 96.49 | |
| d1qnra_ | 344 | Beta-mannanase {Trichoderma reesei [TaxId: 51453]} | 96.27 | |
| d1x7fa2 | 244 | Outer surface protein, N-terminal domain {Bacillus | 96.26 | |
| d1uuqa_ | 410 | Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | 96.22 | |
| d2c0ha1 | 350 | endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed | 96.19 | |
| d1ji1a2 | 83 | Maltogenic amylase {Thermoactinomyces vulgaris, TV | 96.17 | |
| d1ea9c2 | 80 | Maltogenic amylase {Bacillus sp., cyclomaltodextri | 95.87 | |
| d1j0ha2 | 83 | Neopullulanase {Bacillus stearothermophilus [TaxId | 95.55 | |
| d1wkya2 | 297 | Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449 | 95.47 | |
| d1ceoa_ | 340 | Endoglucanase CelC {Clostridium thermocellum [TaxI | 95.29 | |
| d1h4pa_ | 408 | Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom | 94.97 | |
| d1bqca_ | 302 | Beta-mannanase {Thermomonospora fusca [TaxId: 2021 | 94.92 | |
| d1g01a_ | 357 | Alkaline cellulase K catalytic domain {Bacillus sp | 94.9 | |
| d7a3ha_ | 300 | Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId | 94.68 | |
| d1cxla3 | 90 | Cyclodextrin glycosyltransferase {Bacillus circula | 94.61 | |
| d1cyga3 | 89 | Cyclodextrin glycosyltransferase {Bacillus stearot | 94.02 | |
| d1hjsa_ | 332 | Beta-1,4-galactanase {Thielavia heterothallica, ak | 93.99 | |
| d1edga_ | 380 | Endoglucanase CelA {Clostridium cellulolyticum [Ta | 93.94 | |
| d3bmva3 | 89 | Cyclodextrin glycosyltransferase {Thermoanaerobact | 93.86 | |
| d1foba_ | 334 | Beta-1,4-galactanase {Fungus (Aspergillus aculeatu | 93.8 | |
| d2pb1a1 | 394 | Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) | 93.74 | |
| d1kwga2 | 393 | A4 beta-galactosidase {Thermus thermophilus [TaxId | 93.6 | |
| d1vjza_ | 325 | Endoglucanase homologue TM1752 {Thermotoga maritim | 93.25 | |
| d1egza_ | 291 | Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: | 93.23 | |
| d1ur4a_ | 387 | Beta-1,4-galactanase {Bacillus licheniformis [TaxI | 93.05 | |
| d1nowa1 | 353 | beta-hexosaminidase B {Human (Homo sapiens) [TaxId | 93.01 | |
| d1uoka1 | 79 | Oligo-1,6-glucosidase {Bacillus cereus [TaxId: 139 | 92.4 | |
| d1edta_ | 265 | Endo-beta-N-acetylglucosaminidase {Streptomyces pl | 92.28 | |
| d1tvna1 | 293 | Endoglucanase Cel5a {Pseudoalteromonas haloplankti | 91.81 | |
| d1m53a1 | 78 | Isomaltulose synthase PalI {Klebsiella sp., lx3 [T | 91.18 | |
| d1hx0a1 | 93 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 91.04 | |
| d2ebfx2 | 219 | Dermonecrotic toxin, ToxA {Pasteurella multocida [ | 90.45 | |
| d1h1na_ | 305 | Endocellulase EngI {Thermoascus aurantiacus [TaxId | 90.38 | |
| d1jaea1 | 93 | Animal alpha-amylase {Yellow mealworm (Tenebrio mo | 90.17 | |
| d2ebna_ | 285 | Endo-beta-N-acetylglucosaminidase {Flavobacterium | 90.0 | |
| d2fhfa5 | 563 | Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 | 89.24 | |
| d1qbaa3 | 443 | Bacterial chitobiase (beta-N-acetylhexosaminidase) | 88.84 | |
| d1m7xa2 | 106 | 1,4-alpha-glucan branching enzyme {Escherichia col | 88.61 | |
| d1jaka1 | 356 | beta-N-acetylhexosaminidase {Streptomyces plicatus | 88.54 | |
| d1hl9a2 | 350 | Putative alpha-L-fucosidase, catalytic domain {The | 88.4 | |
| d1g94a1 | 94 | Bacterial alpha-Amylase {Pseudoalteromonas halopla | 87.8 | |
| d1yhta1 | 344 | Dispersin B, DspB {Actinobacillus actinomycetemcom | 87.59 | |
| d1eoka_ | 282 | Endo-beta-N-acetylglucosaminidase {Flavobacterium | 86.96 | |
| d1r46a2 | 292 | Melibiase {Human (Homo sapiens) [TaxId: 9606]} | 86.87 | |
| d1ua7a1 | 78 | Bacterial alpha-Amylase {Bacillus subtilis [TaxId: | 85.61 | |
| d1vema2 | 417 | Bacterial beta-amylase {Bacillus cereus [TaxId: 13 | 84.03 | |
| d1h3ga2 | 83 | Cyclomaltodextrinase {Flavobacterium sp. 92 [TaxId | 83.86 | |
| d1tg7a5 | 354 | Beta-galactosidase LacA, N-terminal domain {Penici | 83.64 | |
| d1iv8a2 | 653 | Maltooligosyl trehalose synthase {Archaeon Sulfolo | 83.57 | |
| d1uasa2 | 273 | Melibiase {Rice (Oryza sativa) [TaxId: 4530]} | 82.18 | |
| d2gjxa1 | 362 | beta-hexosaminidase A {Human (Homo sapiens) [TaxId | 81.48 | |
| d1jz8a5 | 292 | beta-Galactosidase, domain 3 {Escherichia coli [Ta | 81.06 | |
| d1gjwa2 | 572 | Maltosyltransferase {Thermotoga maritima [TaxId: 2 | 80.37 |
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Probab=100.00 E-value=5.6e-65 Score=493.57 Aligned_cols=330 Identities=49% Similarity=1.023 Sum_probs=257.5
Q ss_pred eeEEEeeecCCCCC--ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHc
Q 015125 26 EILFQGFNWESCKH--DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 26 ~~i~~~f~~~~~~~--g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~ 102 (413)
+||+|+|+|+++++ |||++|++||||||+||||+|||+||++++++|||+|.|||+|+| +|||+++|++||++||++
T Consensus 2 ~~~~~~f~~~~~~~~~g~~~~i~~kLdyl~~lGv~~i~L~Pi~~~~~~~gY~~~d~~~id~~~~G~~~~f~~lv~~~H~~ 81 (347)
T d1ht6a2 2 QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGK 81 (347)
T ss_dssp CCEEECCCTTGGGCTTCHHHHHHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHT
T ss_pred eeEEeccccCcCCCCCCCHHHHHHhHHHHHHcCCCEEEECCCCcCCCCCCCCccCcCcCCcccCCCHHHHHHHHHHHhhc
Confidence 68999999998888 799999999999999999999999999999999999999999998 699999999999999999
Q ss_pred CCEEEEEEccccCcCCCCCCCCcccccCCC----CCCCCCCCeec----cCCCCCCCcCCCCCCCCCcCCCCCHHHHHHH
Q 015125 103 KVRAMADIVINHRVGTTQGHGGKYNRYDGI----PLSWDEHAVTS----CTGGLGNGSTGDNFHGVPNIDHTQHFVRKDI 174 (413)
Q Consensus 103 Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l 174 (413)
||+||||+|+||++..+++....+..+.+. ...+....... +.+..........+..+|+||++|++||+++
T Consensus 82 gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~n~~v~~~l 161 (347)
T d1ht6a2 82 GVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQREL 161 (347)
T ss_dssp TCEEEEEECCSBCCCSEECTTSCEEECCCSSSSSTTCCCGGGBCTTCTTTCCSCSCCCSSCCCTTSCBBCTTCHHHHHHH
T ss_pred ceEEeeeccccccCCCCcccccccccccCCCCCCCcCcCccccCCCcccccccccccccccccCCCCcccccchhhhhhh
Confidence 999999999999999998776555443321 01111111000 1111122234445688999999999999999
Q ss_pred HHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCCCeEEEcccCCCCC-CCCCCCCccchhhHhHhhhhc---cCCC
Q 015125 175 IAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNY-NSHGLDYNQDSHRQRIINWID---GTGQ 250 (413)
Q Consensus 175 ~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~~~~vgE~~~~~~~-~~~~~~~~~~~~~~~l~~~~~---~~~~ 250 (413)
++++++|++++||||||+|++++++.++|+.+.+.+++.+.++|.+..... ......+........+..+.. ....
T Consensus 162 ~~~~~~wi~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (347)
T d1ht6a2 162 KEWLLWLKSDLGFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAAS 241 (347)
T ss_dssp HHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHCCSCEEECCCCCCCBCTTSSBCSCCHHHHHHHHHHHHHHTGGGS
T ss_pred hhhhhhhcccCCcceEEEechhhcChHHHHHHHHhcccccchhhhcchhhccccccchhhhhcchhhhhhhhhhhCCccc
Confidence 999999999999999999999999999999999999988888887765332 222333333222222222222 2223
Q ss_pred cccccCccchHHHHHHhccchhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeE
Q 015125 251 LSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPS 330 (413)
Q Consensus 251 ~~~~~df~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~ 330 (413)
....+++.+...+..++.+....+..............+...++|++|||++|+.+.+..+.+++++|++++||+||+||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fl~nHD~~R~~s~~~~~~~~~~~a~a~llt~pGiP~ 321 (347)
T d1ht6a2 242 AGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHPGIPC 321 (347)
T ss_dssp SEEEECHHHHHHHHHHTTTCGGGGSCTTSSCSSHHHHCGGGEEEESCCTTTSTTTCSSCCCGGGHHHHHHHHHHSSSEEE
T ss_pred cchhhhcchhhHHHHhhccchHHHHHHhhhccccccCChhHeEEecCCCCccCcccccCCCHHHHHHHHHHHHHcCCceE
Confidence 45678888777777777666554444333222333345668899999999999999988788899999999999999999
Q ss_pred EecCcccCCchhHHHHHHHHHHHHHhC
Q 015125 331 VFYDHFYDWGDSIHNQIVKLMDVRRQQ 357 (413)
Q Consensus 331 Iy~G~E~gw~~~l~~~i~~L~~lR~~~ 357 (413)
||||||++|+ +.+.|++|+.+||++
T Consensus 322 IyyGD~~~~~--~~d~i~~l~~~r~~~ 346 (347)
T d1ht6a2 322 IFYDHFFNWG--FKDQIAALVAIRKRN 346 (347)
T ss_dssp EEHHHHHTSS--CHHHHHHHHHHHHHT
T ss_pred EEeCCCcCCC--chHHHHHHHHHHHhc
Confidence 9999999997 779999999999986
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=100.00 E-value=1e-63 Score=488.26 Aligned_cols=325 Identities=29% Similarity=0.519 Sum_probs=238.9
Q ss_pred ccCCceeEEEeeecCCCCC---ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC----------CCCCCCcccCCCCCCCCC
Q 015125 21 IRNGREILFQGFNWESCKH---DWWRNLERKVPDISKSGFTSVWLPPATHSF----------APEGYLPQNLYSLNSSYG 87 (413)
Q Consensus 21 ~~~~~~~i~~~f~~~~~~~---g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~----------~~~gY~~~d~~~id~~~G 87 (413)
+-.|++||+|+|+|+++++ |+|++|++||||||+||||+|||+|+++++ ++|||+|.|| +|+|+||
T Consensus 12 ~~~g~~~~~~~f~w~~~~~~~~~~~~~i~~kl~yl~~lGv~aIwl~P~~~~~~~~~~~~~~~~~hgY~~~dy-~vd~~~G 90 (357)
T d1gcya2 12 YHGGDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDF-NKNGRYG 90 (357)
T ss_dssp CGGGCCCEEECCCTTHHHHSTTTHHHHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTCSSS-CSCSSSC
T ss_pred ecCCCEEEEeeeecCCCCCCCCcHHHHHHHHHHHHHHcCCCEEEeCcCeeCCccCCCCCCCCCCCCcChhhc-ccCccCC
Confidence 5567789999999997766 479999999999999999999999999875 4799999996 7999999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCC
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQ 167 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~ 167 (413)
|+++|++||++||++||+||+|+|+||++.++++....+....+ .|....................+..+||||++|
T Consensus 91 t~~df~~LV~~aH~~GI~VIlD~V~NH~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n 167 (357)
T d1gcya2 91 SDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQG---FWRNDCADPGNYPNDCDDGDRFIGGDADLNTGH 167 (357)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCSSCSCCCCSSSS---CBGGGSCCCSSSCBTTBSSCCSTTSTTBBCTTS
T ss_pred CHHHHHHHHHHHHhcCCeEEEEEeccccCCCCCccccccccCCC---ccccccCCCCCCCCCCCccccccccccccCCCC
Confidence 99999999999999999999999999999999876554432221 111110000000001112233457899999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCC-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhc
Q 015125 168 HFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARP-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWID 246 (413)
Q Consensus 168 ~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (413)
|+||+++++++++|++++||||||+|+|++++.++|++++..+++ .+++||.|....................+..+.+
T Consensus 168 p~v~~~~~~~~~~~~~~~giDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (357)
T d1gcya2 168 PQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQIIKDWSD 247 (357)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEESCGGGSCHHHHHHHHHHHCTTSEEEECCCCCGGGSCTTSGGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeehhcCCHHHHHHHHhhcCCCceeeeeeccCccchhhhhhhccchhhhhhHhHhh
Confidence 999999999999988899999999999999999999999988876 7789999976321100000010111223333333
Q ss_pred cCCCcccccCccchHHHHHHhccchhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCC------CChhHHHHHHH
Q 015125 247 GTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWP------FPSNHIMEGYA 320 (413)
Q Consensus 247 ~~~~~~~~~df~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~------~~~~~~~la~a 320 (413)
.. ..+.++|.+...+......+ +...+.... ....+..+++|++|||++|+.+... ....++++|++
T Consensus 248 ~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~v~fl~NHD~~r~~~~~~~~~~~~~~~~~~~la~a 320 (357)
T d1gcya2 248 RA--KCPVFDFALKERMQNGSIAD---WKHGLNGNP--DPRWREVAVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYA 320 (357)
T ss_dssp HH--TSCEECHHHHHHHHHSCGGG---GGGSGGGCS--SHHHHTTEEECSCCTTTSBCSSGGGBCCSSCCCGGGHHHHHH
T ss_pred hc--cccccchhhhhhhhhhhHHH---HHHHHhhCc--cccccceeEEeecCCCcccccccCCccccccCHHHHHHHHHH
Confidence 21 24566766665555432222 222111111 1123457899999999999876532 25568999999
Q ss_pred HHhcCCCeeEEecCcccCCchhHHHHHHHHHHHHHhCc
Q 015125 321 YILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQD 358 (413)
Q Consensus 321 ~ll~~pGiP~Iy~G~E~gw~~~l~~~i~~L~~lR~~~p 358 (413)
++||+||+||||||||++|+ +.+.|++|+++||+++
T Consensus 321 lllt~pGiP~IyyGde~d~g--~~d~i~~li~iRk~~~ 356 (357)
T d1gcya2 321 YILTSPGTPVVYWDHMYDWG--YGDFIRQLIQVRRAAG 356 (357)
T ss_dssp HHHHSSSEEEEEHHHHHTSS--CHHHHHHHHHHHHHHT
T ss_pred HHHhCCCccEEEcCCcccCC--ChHHHHHHHHHHHhCC
Confidence 99999999999999999997 7789999999999985
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=100.00 E-value=1.7e-62 Score=481.84 Aligned_cols=329 Identities=24% Similarity=0.492 Sum_probs=254.7
Q ss_pred ccCCceeEEEeeecCCCCCc-cHHHHHhhhhhHHHcCCCEEEcCCCCCCCC---CCCCCcccCC---------CCCCCCC
Q 015125 21 IRNGREILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFA---PEGYLPQNLY---------SLNSSYG 87 (413)
Q Consensus 21 ~~~~~~~i~~~f~~~~~~~g-~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~---~~gY~~~d~~---------~id~~~G 87 (413)
++.+ +||+|+|+|+++++| .|+||++||||||+||||+||||||+++.+ +|||++.||| +|+|+||
T Consensus 6 ~~~~-~~~~q~f~w~~~~~~~~~~gi~~kLdylk~LGv~~Iwl~Pv~~~~~~~~~~gY~~~dy~~~~~~~~~~~vd~~~G 84 (361)
T d1mxga2 6 LEEG-GVIMQAFYWDVPGGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFG 84 (361)
T ss_dssp GGGT-CCEEECCCTTCCCSSCHHHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSSCSSC
T ss_pred cccC-CEEEEeeecCCCCCCchHHHHHHHHHHHHhcCCCEEEeCcCeeCCCCCCCCCCCcccccccCccccccCCCCCCC
Confidence 4444 899999999999885 689999999999999999999999998654 7999999998 6899999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCC---cc--cccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCc
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGG---KY--NRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPN 162 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~---~y--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 162 (413)
|+++|++||++||++||+||||+|+||++.++++... .+ ..+..............+..........+.+..+|+
T Consensus 85 t~~d~~~LV~~aH~~GikVIlD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 164 (361)
T d1mxga2 85 SKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTANYLDFHPNELHCCDEGTFGGFPD 164 (361)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCCCEEEEETTTTEEEEEECTTCTTCCSCCCGGGBSSSSSCSCCSCCCTTSCB
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeeeccccCCccccCCccccccccccccccCCCCCccccccCcccccccccccccCccc
Confidence 9999999999999999999999999999987753321 11 111110000000011111111122233445678999
Q ss_pred CCCCCHHHHHHHHHH---HHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCCCeEEEcccCCCCCCCCCCCCccchhhH
Q 015125 163 IDHTQHFVRKDIIAW---LRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQ 239 (413)
Q Consensus 163 ln~~~~~vr~~l~~~---~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~~~~vgE~~~~~~~~~~~~~~~~~~~~~ 239 (413)
+++.++.++.++++. +.+|++++||||||+|+|++++.+||+++.+.++. +++||+|... ..
T Consensus 165 ~~~~~~~~~~~l~~~~~~~~~~~~~~giDGfR~Daa~~v~~~f~~~~~~~~~~-~~~gE~~~~~--------------~~ 229 (361)
T d1mxga2 165 ICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKGYGAWVVRDWLNWWGG-WAVGEYWDTN--------------VD 229 (361)
T ss_dssp BCTTSHHHHHHHTSSTTSHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHCC-CEEECCCCSC--------------HH
T ss_pred ccCCcchhHHHHHHHHHHHhhhhhhcCCcceeecchhhCCHHHHHHHHhhcCC-ceecccccCC--------------HH
Confidence 999999999998653 34556799999999999999999999999998874 6799999763 35
Q ss_pred hHhhhhccCCCcccccCccchHHHHHHhcc-chhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCChhHHHHH
Q 015125 240 RIINWIDGTGQLSAAFDFTTKGILQEAVKG-QFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEG 318 (413)
Q Consensus 240 ~l~~~~~~~~~~~~~~df~~~~~l~~~~~g-~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~~~~~la 318 (413)
.+..|.... ..++|||+++..+.+++.+ ....+...+..........|.++++|++|||++|+.+ .++|
T Consensus 230 ~~~~~~~~~--~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fl~NHD~~R~~~--------~~~a 299 (361)
T d1mxga2 230 ALLSWAYES--GAKVFDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWN--------KYPA 299 (361)
T ss_dssp HHHHHHHHH--TSEEECHHHHHHHHHHHTTTCHHHHHHHHHTTCSSTTTCTTTEEEESCCSSCCCCSC--------HHHH
T ss_pred HHhhhhhcc--CCccccchHHHHHHHHHhcCChHHHHHHHhhccccccCCHHHheeeCcccCCccccc--------HHHH
Confidence 666676543 3578999999999999843 3344444333333444556678999999999999864 4689
Q ss_pred HHHHhcCCCeeEEecCcccCCchhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEEC
Q 015125 319 YAYILMHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAIIG 380 (413)
Q Consensus 319 ~a~ll~~pGiP~Iy~G~E~gw~~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r~ 380 (413)
+|++||+||+|+||||+|.+|. ..+.+++|+++|++. ..|.++.+..+.++++|.|.
T Consensus 300 ~a~llt~pGiP~iyYGd~~~~~--~~~~~~~l~~~~~~~---~~g~~~~~~~~~d~~~f~R~ 356 (361)
T d1mxga2 300 YAFILTYEGQPVIFYRDFEEWL--NKDKLINLIWIHDHL---AGGSTTIVYYDNDELIFVRN 356 (361)
T ss_dssp HHHHHHSSSEEEEEHHHHHTTS--CHHHHHHHHHHHHHT---CCSCEEEEEECSSEEEEEEC
T ss_pred HHHHHcCCCccEEEeCCCcccC--CcHHHHHHHHHHHHh---cCCCeEEEEECCCEEEEEeC
Confidence 9999999999999999998887 356778888898875 78999999999999999983
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Probab=100.00 E-value=4.9e-61 Score=476.47 Aligned_cols=316 Identities=25% Similarity=0.508 Sum_probs=241.4
Q ss_pred ceeEEEeeecCCCCC-ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCC---------CCCCCCCHHHH
Q 015125 25 REILFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYS---------LNSSYGSEHLL 92 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~-g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~---------id~~~Gt~~~~ 92 (413)
++||||+|+|.++++ |+|+||++||||||+||||+||||||+++. .++||++.|+|+ |||+|||++||
T Consensus 2 ~~~~~~~f~w~~~~~gg~~~gi~~kLdylk~LGvtaI~L~Pi~~~~~~~~~gy~~~~~Y~~~~~~~~~~vd~~~Gt~~df 81 (393)
T d1e43a2 2 NGTLMQYFEWYTPNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSEL 81 (393)
T ss_dssp CCCEEECCCTTCCSSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHH
T ss_pred CccEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEeCcCccCCCCCCCCCCcccCcccccccccCccCCCCCCHHHH
Confidence 479999999988888 699999999999999999999999999864 478888888774 79999999999
Q ss_pred HHHHHHHHHcCCEEEEEEccccCcCCCCCCCC----------------c-----ccccCC-----C------------CC
Q 015125 93 KALLHKMKQHKVRAMADIVINHRVGTTQGHGG----------------K-----YNRYDG-----I------------PL 134 (413)
Q Consensus 93 ~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~----------------~-----y~~~~~-----~------------~~ 134 (413)
|+||++||++||+||+|+|+||++.++++... . |..+.. . ..
T Consensus 82 ~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (393)
T d1e43a2 82 QDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGA 161 (393)
T ss_dssp HHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEEE
T ss_pred HHHHHHHHHcCCEEEEEEeeccccCCCccccccccccCccccccccccccccccccccccCCCCCCCcccccccccCCCC
Confidence 99999999999999999999999988764210 0 000000 0 00
Q ss_pred CCCCC----CeeccC---CCCC----CCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHH
Q 015125 135 SWDEH----AVTSCT---GGLG----NGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYV 203 (413)
Q Consensus 135 ~~~~~----~~~~~~---~~~~----~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~ 203 (413)
+|... ....+. ..|. .......+..+||||++||+|++++++++++|++++||||||+|++++++.+||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~np~v~~~~~~~~~~w~~~~GiDGfR~Da~~~~~~~f~ 241 (393)
T d1e43a2 162 DWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSFL 241 (393)
T ss_dssp SCBTTTTBCCEEEECSSSCCCCSSSCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCHHHH
T ss_pred CccccCCcCCcccccCcccccccccccccceeccccccccccCChhhhHHHHHHHHhhhhhcCcceEEeeccccCCHHHH
Confidence 11110 000000 0111 011222456799999999999999999999999999999999999999999999
Q ss_pred HHHHHhhC-----CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhc-cchhhhhhh
Q 015125 204 KEYIEGAR-----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK-GQFWRLRDA 277 (413)
Q Consensus 204 ~~~~~~~~-----~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~-g~~~~~~~~ 277 (413)
++++++++ +.+++||.|... ...+..|...++...++|||++...+..++. +....+.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~gE~~~~~--------------~~~~~~~~~~~~~~~~~~d~~l~~~~~~a~~~~~~~~l~~~ 307 (393)
T d1e43a2 242 RDWVQAVRQATGKEMFTVAEYWQNN--------------AGKLENYLNKTSFNQSVFDVPLHFNLQAASSQGGGYDMRKL 307 (393)
T ss_dssp HHHHHHHHHHHCSCCEEEECCCCSC--------------HHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCGGGT
T ss_pred HHHHHHHHHhcCcceEEeeeecCCc--------------HHhhhhhhhccccceeeechHHHHHHHHHHhccchHHHHHH
Confidence 99887764 367899999752 3566677766666778999999988888873 334445544
Q ss_pred cCCCCCcccccCCcceecccCCCCCcCCCCCCC-ChhHHHHHHHHHhcC-CCeeEEecCcccCCch-------hHHHHHH
Q 015125 278 QGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPF-PSNHIMEGYAYILMH-PGIPSVFYDHFYDWGD-------SIHNQIV 348 (413)
Q Consensus 278 ~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~-~~~~~~la~a~ll~~-pGiP~Iy~G~E~gw~~-------~l~~~i~ 348 (413)
+.. ......|..+++|++|||++|+.+.... ...+.++|+++++++ ||+||||||||+|+.+ .+...|+
T Consensus 308 ~~~--~~~~~~~~~~v~fl~nHD~~R~~~~~~~~~~~~~~la~a~ll~~~pG~P~IyyGdE~G~~g~~~~~~~~~~~~i~ 385 (393)
T d1e43a2 308 LNG--TVVSKHPLKSVTFVDNHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGTKGDSQREIPALKHKIE 385 (393)
T ss_dssp TTT--CSTTTCGGGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCCCCSSTTCCCCCHHHHH
T ss_pred Hhh--cccccCccceeEeccCCCCcccccccCchhHHHHHHHHHHHHHcCCCcEEEEhhHhcCCCCCCCCCcHHHHHHHH
Confidence 432 2233456688999999999999887643 344567888888765 9999999999999742 5788999
Q ss_pred HHHHHHHh
Q 015125 349 KLMDVRRQ 356 (413)
Q Consensus 349 ~L~~lR~~ 356 (413)
.|+++||+
T Consensus 386 ~l~~~rk~ 393 (393)
T d1e43a2 386 PILKARKQ 393 (393)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhCc
Confidence 99999996
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Probab=100.00 E-value=1e-60 Score=473.94 Aligned_cols=318 Identities=26% Similarity=0.513 Sum_probs=240.9
Q ss_pred ceeEEEeeecCCCCCc-cHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCC---------CCCCCCCCHHHH
Q 015125 25 REILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLY---------SLNSSYGSEHLL 92 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~g-~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~---------~id~~~Gt~~~~ 92 (413)
++||||+|+|..+.+| +|++|++||||||+||||+|||+||+++. .++||++.|+| +|+|+|||++||
T Consensus 2 ~~~~~q~f~w~~~~~g~~~~~i~~kLdyL~~LGv~aIwL~Pi~~~~~~~~~gY~~~~~yd~~~~~~~~~vd~~~Gt~~df 81 (394)
T d2d3na2 2 NGTMMQYFEWYLPNDGNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQL 81 (394)
T ss_dssp CCCEEECCCTTCCSSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSBTTBCHHHH
T ss_pred CccEEEEEecccCCCCCcHHHHHHHHHHHHHcCCCEEEECcCccCCCCCCCCCCcccCcccccccccCCcCCCCCCHHHH
Confidence 4799999999999886 79999999999999999999999999864 47888888877 599999999999
Q ss_pred HHHHHHHHHcCCEEEEEEccccCcCCCCCCC----------------Ccc-----cccCC---------C--------CC
Q 015125 93 KALLHKMKQHKVRAMADIVINHRVGTTQGHG----------------GKY-----NRYDG---------I--------PL 134 (413)
Q Consensus 93 ~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~----------------~~y-----~~~~~---------~--------~~ 134 (413)
++||++||++|||||+|+|+||+|..+++.. +.| ..+.. . ..
T Consensus 82 ~~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (394)
T d2d3na2 82 QAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGV 161 (394)
T ss_dssp HHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEEE
T ss_pred HHHHHHHHHCCCEEEEEEecccccCccccccccccccCcccccccccccccccccccccCccccCCCCccccccccCCCc
Confidence 9999999999999999999999997653210 000 00000 0 00
Q ss_pred CCCCCC-----eecc---CCCCC----CCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHH
Q 015125 135 SWDEHA-----VTSC---TGGLG----NGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKY 202 (413)
Q Consensus 135 ~~~~~~-----~~~~---~~~~~----~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~ 202 (413)
+|.... .... ...+. .......+..+||||++||+||+++++++++|++++||||||+|+|++++.+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~~~~~~~~w~~~~giDGfR~D~a~~~~~~~ 241 (394)
T d2d3na2 162 DWDQSRRLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKYSF 241 (394)
T ss_dssp SCCTTTCCSSCEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHH
T ss_pred ccccccCCCCCcceecCCCCccccccccccccccccCCcccccCCHHHHHHHHHhhhhhhcccCcceEEecccccCChHH
Confidence 111100 0000 00110 11123346789999999999999999999999988999999999999999999
Q ss_pred HHHHHHhhC-----CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhc-cchhhhhh
Q 015125 203 VKEYIEGAR-----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK-GQFWRLRD 276 (413)
Q Consensus 203 ~~~~~~~~~-----~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~-g~~~~~~~ 276 (413)
|++++++++ +.+++||.|..+ ...+..|....+...++|||++...+.+++. +....+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~gE~~~~~--------------~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~l~~ 307 (394)
T d2d3na2 242 TRDWINHVRSATGKNMFAVAEFWKND--------------LGAIENYLQKTNWNHSVFDVPLHYNLYNASKSGGNYDMRN 307 (394)
T ss_dssp HHHHHHHHHHHHTCCCEEEECCCCSC--------------HHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCGGG
T ss_pred HHHHHHHHHHhcCCceeecccccccc--------------cccccchhccccccceeehHHHHHHHHHHHhcCcchhHHH
Confidence 999887664 378899999753 3556667666666788999999999988874 33334444
Q ss_pred hcCCCCCcccccCCcceecccCCCCCcCCCCCCC-ChhHHHHHHHHHhcC-CCeeEEecCcccCCch----hHHHHHHHH
Q 015125 277 AQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPF-PSNHIMEGYAYILMH-PGIPSVFYDHFYDWGD----SIHNQIVKL 350 (413)
Q Consensus 277 ~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~-~~~~~~la~a~ll~~-pGiP~Iy~G~E~gw~~----~l~~~i~~L 350 (413)
.... ......|..+++|++|||++|..+.... ...+.++|++++|++ ||+||||||||+|... .....|++|
T Consensus 308 ~~~~--~~~~~~~~~~v~fl~NHD~~r~~~~~~~~~~~~~~la~a~~l~~~pGiP~iyyGdE~G~~~~~~p~~r~~~~~l 385 (394)
T d2d3na2 308 IFNG--TVVQRHPSHAVTFVDNHDSQPEEALESFVEEWFKPLAYALTLTREQGYPSVFYGDYYGIPTHGVPAMRSKIDPI 385 (394)
T ss_dssp TTTT--CHHHHCGGGEEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHHHHHH
T ss_pred HHhc--cccccCHhHeeEeCcCCcCccccccccCccHHHHHHHHHHHHHcCCCeEEEEhhHhcCCCCCCCcchHHHHHHH
Confidence 3331 2233456688999999999998776543 334567888887765 8999999999998743 477889999
Q ss_pred HHHHHhCc
Q 015125 351 MDVRRQQD 358 (413)
Q Consensus 351 ~~lR~~~p 358 (413)
+++||+++
T Consensus 386 ~~~r~~~~ 393 (394)
T d2d3na2 386 LEARQKYA 393 (394)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 99999874
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=1.6e-61 Score=477.35 Aligned_cols=324 Identities=15% Similarity=0.257 Sum_probs=245.0
Q ss_pred cccccCCceeEEEeeecCCCCC------------------------ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCC
Q 015125 18 GAVIRNGREILFQGFNWESCKH------------------------DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEG 73 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~~------------------------g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~g 73 (413)
+|.+-.+ .||||++...|.+. |||+||++||||||+||||+||||||++++++||
T Consensus 5 ~P~w~~~-~viY~v~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kldyl~~LGv~~i~L~Pi~~~~~~~g 83 (382)
T d1j0ha3 5 APDWVKD-TVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLGITGIYLTPIFRSPSNHK 83 (382)
T ss_dssp CCGGGGG-CCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSSSSC
T ss_pred CCcchhC-CEEEEEEcchhcCCCCCCCccccccccccCCccCccCCcCHHHHHHhHHHHHHcCCCEEEeCCCCcCCcccC
Confidence 4665333 59999999876532 8999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccC-CCCCCCCCC-CeeccCCCCCCC
Q 015125 74 YLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYD-GIPLSWDEH-AVTSCTGGLGNG 151 (413)
Q Consensus 74 Y~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~-~~~~~~~~~-~~~~~~~~~~~~ 151 (413)
|+|.||++|+|+|||+++||+||++||++||+||+|+|+||++.++++....+.... ....+|... ......++....
T Consensus 84 y~~~d~~~vd~~~Gt~~~~~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (382)
T d1j0ha3 84 YDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNY 163 (382)
T ss_dssp CSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSSCSB
T ss_pred CCcccccccCCCCCCHHHHHHHHHHhhhccceEEEEeeecccccccccchhhhccCCccccCCccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999875421110000 000111110 000001111112
Q ss_pred cCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC---C-CeEEEcccCCCCCCC
Q 015125 152 STGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYWDSCNYNS 227 (413)
Q Consensus 152 ~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~ 227 (413)
.....+..+|+||++||+||++|++++++|++++||||||+|+|++++.++++++.++++ | .+++||.|....
T Consensus 164 ~~~~~~~~~~dln~~n~~vr~~l~~~~~~wi~~~giDGfR~Da~~~~~~~~~~~~~~~~~~~~p~~~~i~e~~~~~~--- 240 (382)
T d1j0ha3 164 DTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALKPDVYILGEIWHDAM--- 240 (382)
T ss_dssp CBSTTCTTSBBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCSSCCG---
T ss_pred cccccCCCCcccccChHHHHHHHHHHHHhHhhhccccEEEecchhhcchhhhhhhhhhhhccCCCccccccccccch---
Confidence 223345789999999999999999999999999999999999999999999999987654 4 678999997521
Q ss_pred CCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccch---hhhhhhcCC-CCCcccccCCcceecccCCCCCc
Q 015125 228 HGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQF---WRLRDAQGK-PPGVMGWWPSRAVTFLDNHDTGS 303 (413)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~~---~~~~~~~~~-~~~~~~~~p~~~v~flenHD~~R 303 (413)
.++. ..++.+.+++++...+...+.+.. ..+...... ........+...++|++|||++|
T Consensus 241 ---------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~R 304 (382)
T d1j0ha3 241 ---------------PWLR-GDQFDAVMNYPFTDGVLRFFAKEEISARQFANQMMHVLHSYPNNVNEAAFNLLGSHDTSR 304 (382)
T ss_dssp ---------------GGCS-SSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTSCHHHHHTCBCBSCCTTSCC
T ss_pred ---------------hhhc-ccccccccccccchhhhhhhhcccccchhhhhhhhhcccccccccCccceeeccCCCCCc
Confidence 1111 235678889888888888764431 111110000 00001112235789999999999
Q ss_pred CCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC--------------Cc-----hhHHHHHHHHHHHHHhCcccC
Q 015125 304 TQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD--------------WG-----DSIHNQIVKLMDVRRQQDIHS 361 (413)
Q Consensus 304 ~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g--------------w~-----~~l~~~i~~L~~lR~~~p~l~ 361 (413)
+.+.++.+..++++|++++||+||+||||||+|+| |+ .++++++|+|++||+++|+|+
T Consensus 305 ~~~~~~~~~~~~~~a~~lllt~pG~P~iy~G~E~G~~~~~~~~~r~~~~W~~~~~~~~l~~~~k~L~~lR~~~paL~ 381 (382)
T d1j0ha3 305 ILTVCGGDIRKVKLLFLFQLTFTGSPCIYYGDEIGMTGGNDPECRKCMVWDPMQQNKELHQHVKQLIALRKQYRSLR 381 (382)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHSSSCCEEETTGGGTCCCCSTTGGGCCCCCCTTTSCHHHHHHHHHHHHHHHHCHHHH
T ss_pred cccccCChHHHHHHHHHHHHHcCCCCEEEcChhhCcCCCCCcccccCCCCCccccChHHHHHHHHHHHHHhcCHHhC
Confidence 98888767788999999999999999999999986 32 479999999999999999986
|
| >d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Probab=100.00 E-value=1.2e-61 Score=479.03 Aligned_cols=326 Identities=20% Similarity=0.288 Sum_probs=249.2
Q ss_pred ccccccCCceeEEEeeecCCCCC-----------------ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--------CC
Q 015125 17 LGAVIRNGREILFQGFNWESCKH-----------------DWWRNLERKVPDISKSGFTSVWLPPATHSF--------AP 71 (413)
Q Consensus 17 ~~~~~~~~~~~i~~~f~~~~~~~-----------------g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--------~~ 71 (413)
.||.++. .||||+|...|.+. |||+||+++|||||+||||+||||||+++. ++
T Consensus 2 ~p~~W~~--~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gGd~~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~ 79 (381)
T d2guya2 2 TPADWRS--QSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAY 79 (381)
T ss_dssp CHHHHTT--CCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCT
T ss_pred CCccccC--CeEEEEEcchhcCCCCCCCCCCCCccCccCCcCHHHHHHhHHHHHHCCCCEEEeCCCCCCCcccCCCCCCC
Confidence 3677766 59999999865443 899999999999999999999999999853 47
Q ss_pred CCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCC--CCCCCCCCCee-ccCCCC
Q 015125 72 EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG--IPLSWDEHAVT-SCTGGL 148 (413)
Q Consensus 72 ~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~--~~~~~~~~~~~-~~~~~~ 148 (413)
|||++.||++|+|+|||.+|||+||++||++||+||+|+|+||+|.++++....+.++.. ....|++.... .+.+..
T Consensus 80 ~gY~~~d~~~vd~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (381)
T d2guya2 80 HGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQT 159 (381)
T ss_dssp TSCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCCSGGGBCCSCBCCCTTCHH
T ss_pred CCcccccccccccCCCCHHHHHHHHHHHHhhccceeeeccccccccccCcccccccccCCCCcccceecccccccccccc
Confidence 999999999999999999999999999999999999999999999998876655544432 01112221110 000000
Q ss_pred --CCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCCCeEEEcccCCCCCC
Q 015125 149 --GNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYN 226 (413)
Q Consensus 149 --~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~~~~vgE~~~~~~~~ 226 (413)
.+++.......+|+||++||+||+++++++++|+.++||||||+|+|++++.+||+++.+..+ .+++||+|...
T Consensus 160 ~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~~~giDGfR~D~~~~~~~~f~~~~~~~~~-~~~igE~~~~~--- 235 (381)
T d2guya2 160 QVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAG-VYCIGEVLDGD--- 235 (381)
T ss_dssp HHHHSBEECSSEEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCGGGHHHHHHHHT-SEEEECCCCSC---
T ss_pred ccceeeccCCccccchhccccHHHHHHHHHHhhhccccccccceeeehHhhcCHHHHHhhhhcce-eeeeeeccccc---
Confidence 011222234578999999999999999999999989999999999999999999999988764 68899999752
Q ss_pred CCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc---hhhhhhhcCCCCCcccccCCcceecccCCCCCc
Q 015125 227 SHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGS 303 (413)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R 303 (413)
...+..+. ..+.++++|.+...+.+++.+. ...+.+....... ....+...++|++|||++|
T Consensus 236 -----------~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~enHD~~R 300 (381)
T d2guya2 236 -----------PAYTCPYQ---NVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKS-DCPDSTLLGTFVENHDNPR 300 (381)
T ss_dssp -----------HHHHGGGG---GTSSEEBCHHHHHHHHHHHSSTTCCHHHHHHHHHHHHH-HSSCGGGSEECSCCTTSCC
T ss_pred -----------Hhhhcccc---ccccceecchhHHHHHHHHhccCCchHHHHHHHHHHHh-hcCccccceeeccCcCccc
Confidence 12333332 2356889999988888887432 2222221110000 0012235789999999999
Q ss_pred CCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccCC-------------------chhHHHHHHHHHHHHHhCcccCCCC
Q 015125 304 TQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDW-------------------GDSIHNQIVKLMDVRRQQDIHSRSS 364 (413)
Q Consensus 304 ~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~gw-------------------~~~l~~~i~~L~~lR~~~p~l~~G~ 364 (413)
+.+..+ +..+.++|++++||+||+||||||+|+|. +.++.++|++|++|||+.++++.|.
T Consensus 301 ~~s~~~-~~~~~~~a~~~l~t~pGiP~iy~G~E~g~~g~~~~~~r~~~~~~~~~~~~~l~~~i~~L~~lR~~~~~~~~~~ 379 (381)
T d2guya2 301 FASYTN-DIALAKNVAAFIILNDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASANAIRNYAISKDTGF 379 (381)
T ss_dssp GGGTCC-CHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTTTCCCGGGGTCCTTSHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred cccccC-CHHHHHHHHHHHHHcCCCcEEEcccccCcCCCCCcchhcccccccCcCCHHHHHHHHHHHHHHhHHhhccCCC
Confidence 998876 67789999999999999999999999752 3469999999999999988887764
|
| >d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Probab=100.00 E-value=7e-61 Score=472.26 Aligned_cols=326 Identities=16% Similarity=0.257 Sum_probs=245.0
Q ss_pred cccccCCceeEEEeeecCCCC------------------------CccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCC
Q 015125 18 GAVIRNGREILFQGFNWESCK------------------------HDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEG 73 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~------------------------~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~g 73 (413)
||.|-.+ .||||++...|.+ .|||+||++||||||+||||+||||||+++.++||
T Consensus 3 ~p~W~~~-~v~Y~i~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~~gi~~kLdylk~LGv~~i~l~Pi~~~~~~~g 81 (382)
T d1ea9c3 3 PPAWVKD-AIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLGVNAVYFTPLFKATTNHK 81 (382)
T ss_dssp CCTHHHH-CCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTHHHHHHHTCSEEEECCCSSCSSSST
T ss_pred CCccccC-CeEEEEEcchhcCCCCCCCccCcccccccCCCcCccCCcCHHHHHHhhHHHHhCCCCEEEeCCCccCCCCCC
Confidence 4675343 6999999987753 28999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCC-CCCCCCCCC--eeccCCCCCC
Q 015125 74 YLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG-IPLSWDEHA--VTSCTGGLGN 150 (413)
Q Consensus 74 Y~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~-~~~~~~~~~--~~~~~~~~~~ 150 (413)
|+|.||++|+|+|||++|||+||++||++||+||+|+|+||++.++++.......... ...+|.... .....+....
T Consensus 82 Y~~~~~~~id~~~Gt~~df~~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (382)
T d1ea9c3 82 YDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIPT 161 (382)
T ss_dssp TSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTHHHHHHHTTTTTCTTTTSSCBCSSSCCCTTSCCS
T ss_pred CCcccccccccccCCHHHHHHHHHHHHhhcceEEEeeecccccccCcchhhhhhcCCcccccccccccccccccccCccc
Confidence 9999999999999999999999999999999999999999999998743210000000 001111100 0001111111
Q ss_pred CcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC---C-CeEEEcccCCCCCC
Q 015125 151 GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYWDSCNYN 226 (413)
Q Consensus 151 ~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~ 226 (413)
.........+|++|++||+||+++++++++|++++||||||+|++++++.++++++..+++ + .+++||.|....
T Consensus 162 ~~~~~~~~~~~d~n~~~~~v~~~l~~~~~~w~~~~gvDGfR~Da~~~~~~~~~~~~~~~~~~~~p~~~~~~e~~~~~~-- 239 (382)
T d1ea9c3 162 YDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFRRVVKQANPDAYILGEVWHESS-- 239 (382)
T ss_dssp BCBSSSCTTSBBCCTTSHHHHHHHHHHHHHHHHHHCCSEEEETTCTTSCHHHHHHHHHHHHHHCTTCEEEECCCSCCT--
T ss_pred ccccccccccCccccccHHHHHHHHHHHhhcccceeeeEEEecchhhCchhhhhhhhhhhhhcCCCeeEEeeeccccc--
Confidence 1111234678999999999999999999999999999999999999999999998887654 3 788999886521
Q ss_pred CCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc---hhhhhhhcCCC-CCcccccCCcceecccCCCCC
Q 015125 227 SHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKP-PGVMGWWPSRAVTFLDNHDTG 302 (413)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~---~~~~~~~~~~~-~~~~~~~p~~~v~flenHD~~ 302 (413)
.++. ..+..+.+++.+...+.+.+.+. ...+....... .......+...++|++|||++
T Consensus 240 ----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nHD~~ 302 (382)
T d1ea9c3 240 ----------------IWLE-GDQFDAVMNYPFTNAVLDFFIHQIADAEKFSFMLGKQLAGYPRQASEVMFNLLDSHDTA 302 (382)
T ss_dssp ----------------TTTT-TTSCSEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHTTTTSCHHHHHTCEECSCCTTSC
T ss_pred ----------------cccc-CccccccccccchhhhHhhhhccccchhHHHHHHHHHHHhchhhcccceeeeeccCccc
Confidence 1111 12456778888888888876432 22222211110 111111223678999999999
Q ss_pred cCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC--------------Cc-----hhHHHHHHHHHHHHHhCcccCCC
Q 015125 303 STQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD--------------WG-----DSIHNQIVKLMDVRRQQDIHSRS 363 (413)
Q Consensus 303 R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g--------------w~-----~~l~~~i~~L~~lR~~~p~l~~G 363 (413)
|+.+....+..++++|++++||+||+||||||+|+| |+ +++++++|+|++||+++|+|+.|
T Consensus 303 r~~~~~~~~~~~~~~a~~~~l~~pG~P~Iy~G~E~g~~~~~~~~~r~~~~w~~~~~~~~l~~~~~~L~~lR~~~paL~~G 382 (382)
T d1ea9c3 303 RLLTQADGDKRKMKLAVLFQFTYFGTPCIYYGDEVGLDGGHDPGCRKCMEWDETKHDKDLFAFYQTVIRLRQAHAALRTG 382 (382)
T ss_dssp CHHHHHCSCHHHHHHHHHHHTTSSSEECCCSSCSSCCCCCSHHHHTCCCCCCTTSCCHHHHHHHHHHHHHHHHCSHHHHC
T ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEccHhhCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHHHHhcCHHhcCC
Confidence 998877767788999999999999999999999986 32 47999999999999999999876
|
| >d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus niger, acid amylase [TaxId: 5061]
Probab=100.00 E-value=4.7e-61 Score=474.93 Aligned_cols=326 Identities=19% Similarity=0.281 Sum_probs=247.8
Q ss_pred cccccCCceeEEEeeecCCCCC-----------------ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--------CCC
Q 015125 18 GAVIRNGREILFQGFNWESCKH-----------------DWWRNLERKVPDISKSGFTSVWLPPATHSF--------APE 72 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~~-----------------g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--------~~~ 72 (413)
+|.|++ .||||+|...|.+. |||+||++||||||+||||+|||+||+++. .+|
T Consensus 3 ~~~W~~--~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gG~~~g~~~kLdyL~~LGv~~I~L~Pi~~~~~~~~~~~~~~~ 80 (381)
T d2aaaa2 3 AASWRT--QSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYH 80 (381)
T ss_dssp HHHHTT--CCEEECCHHHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTT
T ss_pred chhhCC--CcEEEEEeCcccCCCCCCCCCCCCCcCCcCCcCHHHHHHHHHHHHHcCCCEEEeCCCccCCccCCCCCCCCc
Confidence 345654 48999998654322 899999999999999999999999999743 479
Q ss_pred CCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCC--CCCCCCCCCe-eccCCCC-
Q 015125 73 GYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG--IPLSWDEHAV-TSCTGGL- 148 (413)
Q Consensus 73 gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~--~~~~~~~~~~-~~~~~~~- 148 (413)
||++.||++|+|+|||+++||+||++||++||+||+|+|+||++.++++....+..+.. ....+++... ..+.+..
T Consensus 81 gY~~~d~~~id~~~Gt~~~~k~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (381)
T d2aaaa2 81 GYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTM 160 (381)
T ss_dssp SCSEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCBSSCGGGCCGGGSBSCCSGGGBCCCCBCCCTTCHHH
T ss_pred ccccccccccccccCCHHHHHHHHHHHhhhhhcccccccccccccccCCccccccccCCcccccccCCCccccccccccc
Confidence 99999999999999999999999999999999999999999999998876555443322 0111222111 0111000
Q ss_pred -CCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCCCeEEEcccCCCCCCC
Q 015125 149 -GNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNS 227 (413)
Q Consensus 149 -~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~~~~vgE~~~~~~~~~ 227 (413)
..++....+..+|+||+.||+||+++++++++|++++||||||+|++++++++||+++.++. +.+++||+|...
T Consensus 161 ~~~~~~~~~~~~~pdln~~np~v~~~~~~~~~~~~~~~giDGfR~D~~~~~~~~f~~~~~~~~-~~~~igE~~~~~---- 235 (381)
T d2aaaa2 161 VEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKAS-GVYCVGEIDNGN---- 235 (381)
T ss_dssp HHHSBEECSSSEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTSCGGGHHHHHHHH-TSEEEECCCCSC----
T ss_pred cCCCccCCccccCccccccchhhhhHHhhhhhhcccceeeeeeeecccccccHHHHHHHHhcc-cccccccccCCC----
Confidence 01122234567899999999999999999999999999999999999999999999987653 478999998752
Q ss_pred CCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc---hhhhhhhcCCCCCcccccCCcceecccCCCCCcC
Q 015125 228 HGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGST 304 (413)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~ 304 (413)
+.....+. ..+.+++||++...+..++.+. ...+.+....... ....+...++|++|||++|+
T Consensus 236 ----------~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~fl~nHD~~R~ 301 (381)
T d2aaaa2 236 ----------PASDCPYQ---KVLDGVLNYPIYWQLLYAFESSSGSISNLYNMIKSVAS-DCSDPTLLGNFIENHDNPRF 301 (381)
T ss_dssp ----------HHHHGGGG---GTSSEEBCHHHHHHHHHHHSSTTSCHHHHHHHHHHHHH-HCSCGGGSEECSCCTTSCCG
T ss_pred ----------chhhhccc---cccccccchhHHHHHHHHHhcCCccHHHHHHHHHhhhh-ccCCchhhccccccCCchhh
Confidence 12222232 2357889999998888887332 2222222110000 01134467899999999999
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCeeEEecCcccCC-------------------chhHHHHHHHHHHHHHhCcccCCCCe
Q 015125 305 QAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDW-------------------GDSIHNQIVKLMDVRRQQDIHSRSSI 365 (413)
Q Consensus 305 ~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~gw-------------------~~~l~~~i~~L~~lR~~~p~l~~G~~ 365 (413)
.+... +..++++|++++||+||+|+||||+|+|. +.+++++||+|++|||++|+|+.|-+
T Consensus 302 ~~~~~-~~~~~~~a~a~llt~pG~P~iy~G~E~g~~g~~~p~~r~~~~~~~~~~~~~l~~~i~~L~~lRk~~~al~~~~~ 380 (381)
T d2aaaa2 302 AKYTS-DYSQAKNVLSYIFLSDGIPIVYAGEEQHYAGGKVPYNREATWLSGYDTSAELYTWIATTNAIRKLAIAADSAYI 380 (381)
T ss_dssp GGTCC-CHHHHHHHHHHHHHSSSEEEEETTTTTTCCCCTTTTTCCCGGGGTTCTTCHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred hcccC-CHHHHHHHHHHHHHcCCCcEeEcCcccCCCCCCCcccccccCcCCCccChHHHHHHHHHHHHHhhChhhcCCCC
Confidence 98775 67789999999999999999999999862 24799999999999999999988753
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=5.6e-60 Score=468.56 Aligned_cols=318 Identities=26% Similarity=0.497 Sum_probs=239.4
Q ss_pred CCceeEEEeeecCCCCC-ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCC---------CCCCCCCCHH
Q 015125 23 NGREILFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLY---------SLNSSYGSEH 90 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~~-g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~---------~id~~~Gt~~ 90 (413)
+-++||||+|+|..+.+ |+|++|++||||||+||||+|||+||+++. .++||++.||| +|+|+|||++
T Consensus 3 ~~~~~~~~~f~w~~~~~~~~~~~i~~kLdyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd~~~Gt~~ 82 (393)
T d1hvxa2 3 PFNGTMMQYFEWYLPDDGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKA 82 (393)
T ss_dssp CCCCCEEECCCTTCCSSSCHHHHHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHH
T ss_pred CCCceEEEeEeeccCCCCChHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCccCccccccccccCCcCCCCCCHH
Confidence 45689999999998887 479999999999999999999999999775 47999999997 5999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEccccCcCCC--CCCC--------------Cccc-----ccC--C-------CCCCC----
Q 015125 91 LLKALLHKMKQHKVRAMADIVINHRVGTT--QGHG--------------GKYN-----RYD--G-------IPLSW---- 136 (413)
Q Consensus 91 ~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~--~~~~--------------~~y~-----~~~--~-------~~~~~---- 136 (413)
||++||++||++||+||||+|+||++... +|.. +.|. .+. + ....|
T Consensus 83 df~~LV~~aH~~GIkVIlDvV~NHt~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (393)
T d1hvxa2 83 QYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHFD 162 (393)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEE
T ss_pred HHHHHHHHHHHCCCEEEEEEecccccccCCccceeecccCccccccccCCCcccccccccCCCCCCCCCCCcccccccCC
Confidence 99999999999999999999999997532 1110 0000 000 0 00001
Q ss_pred ----CCCC----eecc---CCCCC----CCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHH
Q 015125 137 ----DEHA----VTSC---TGGLG----NGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAK 201 (413)
Q Consensus 137 ----~~~~----~~~~---~~~~~----~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~ 201 (413)
.... ...+ ...|. .....+.+..+||||++||+||+++++++++|++++||||||+|+|++++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~giDGfR~D~a~~i~~~ 242 (393)
T d1hvxa2 163 GVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIKFS 242 (393)
T ss_dssp EEEEETTTTEEEEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCTT
T ss_pred CCcccccCCcCccccccCCcCccccccccccceeeccccceeccCChHHHHHHHHHHHHHHHhhCCceeeeeccccCChh
Confidence 0000 0000 01111 1122334577999999999999999999999998899999999999999999
Q ss_pred HHHHHHHhhC-----CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhc-cchhhhh
Q 015125 202 YVKEYIEGAR-----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK-GQFWRLR 275 (413)
Q Consensus 202 ~~~~~~~~~~-----~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~-g~~~~~~ 275 (413)
||+++++.++ +.+++||+|... ...+..|....++..++|||++...+..++. +....+.
T Consensus 243 f~~~~~~~~~~~~~~~~~~~gE~~~~~--------------~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~ 308 (393)
T d1hvxa2 243 FFPDWLSYVRSQTGKPLFTVGEYWSYD--------------INKLHNYIMKTNGTMSLFDAPLHNKFYTASKSGGTFDMR 308 (393)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCSC--------------HHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCGG
T ss_pred HHHHHHHHHHHhcCCcceeeeeccCcc--------------HHHHHHHhhccccccchhhHHHHHHHHHHHccCCHHHHH
Confidence 9998877643 478899999763 3566677666667788999999988888773 3333344
Q ss_pred hhcCCCCCcccccCCcceecccCCCCCcCCCCCCC-ChhHHHHHHHHHhc-CCCeeEEecCcccCCch----hHHHHHHH
Q 015125 276 DAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPF-PSNHIMEGYAYILM-HPGIPSVFYDHFYDWGD----SIHNQIVK 349 (413)
Q Consensus 276 ~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~-~~~~~~la~a~ll~-~pGiP~Iy~G~E~gw~~----~l~~~i~~ 349 (413)
..... ......+..+++|++|||++|+.+.... +..+.++|++++|+ +|||||||||||+|..+ +....|+.
T Consensus 309 ~~~~~--~~~~~~~~~~v~fl~NHD~~r~~~~~~~~~~~~~~~a~a~~l~~~pGiP~iyyGdE~G~~~~~~p~~~~~i~~ 386 (393)
T d1hvxa2 309 TLMTN--TLMKDQPTLAVTFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYPCVFYGDYYGIPQYNIPSLKSKIDP 386 (393)
T ss_dssp GTTTT--CHHHHCGGGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCBGGGTBCCCHHHHHH
T ss_pred HHHHh--hhccCCcccEeEECcCCCCccccccccCCCHHHHHHHHHHHHHhCCCeEEEEhhHhcCCCCcCCCChHHHhHH
Confidence 33321 2233445678999999999998876542 44567788888765 59999999999998753 57788999
Q ss_pred HHHHHHh
Q 015125 350 LMDVRRQ 356 (413)
Q Consensus 350 L~~lR~~ 356 (413)
|+++||.
T Consensus 387 ~~~~rk~ 393 (393)
T d1hvxa2 387 LLIARRD 393 (393)
T ss_dssp HHHHHHH
T ss_pred HHHHcCC
Confidence 9999984
|
| >d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclomaltodextrinase, central domain species: Flavobacterium sp. 92 [TaxId: 197856]
Probab=100.00 E-value=4.9e-60 Score=472.52 Aligned_cols=325 Identities=18% Similarity=0.274 Sum_probs=243.2
Q ss_pred ccCCceeEEEeeecCCCCC------------------------ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC----CCC
Q 015125 21 IRNGREILFQGFNWESCKH------------------------DWWRNLERKVPDISKSGFTSVWLPPATHSF----APE 72 (413)
Q Consensus 21 ~~~~~~~i~~~f~~~~~~~------------------------g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~----~~~ 72 (413)
+..+ .||||+|...|.+. |||+||++||||||+||||+|||+||++++ ++|
T Consensus 8 ~~~~-~viY~i~~~~F~~gd~~nd~~~~~~~~~~~~~~~~~~gGd~~Gl~~kLdyl~~LGv~~I~l~Pi~~~~~~~~~~~ 86 (422)
T d1h3ga3 8 FGPG-DAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIAGLGFTQLWPTPLVENDAAAYSYH 86 (422)
T ss_dssp CCTT-CCEEEECHHHHCCSCGGGSSCTTCSSCCCTTSTTSCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECCCSSCGGG
T ss_pred CCCC-CcEEEeChhhccCCCCCcCccCCccccccccccCCCCCcCHHHHHHhHHHHHHCCCCEEEeCCcccCCCCCCCCC
Confidence 4344 79999999866521 799999999999999999999999999765 478
Q ss_pred CCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcc----cccCCCCCCCCCCCeeccCCCC
Q 015125 73 GYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKY----NRYDGIPLSWDEHAVTSCTGGL 148 (413)
Q Consensus 73 gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y----~~~~~~~~~~~~~~~~~~~~~~ 148 (413)
||+|.||++|+|+|||+++||+||++||++||+||+|+|+||++.+++|.+... ..+... ............+.+
T Consensus 87 GY~~~d~~~vd~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 165 (422)
T d1h3ga3 87 GYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGK-FVPTQHHRVAVQDPY 165 (422)
T ss_dssp CCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSGGGGSCSSTTSBSCCSS-CCBCCCCGGGGSCTT
T ss_pred CCCccccCCcccccCCHHHHHHHHHHHHHhCccccccCccccccccchhhcccccccccccccc-ccccccccccccccc
Confidence 999999999999999999999999999999999999999999999998754321 111100 000000000001111
Q ss_pred CC------CcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC---C-CeEEEc
Q 015125 149 GN------GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGE 218 (413)
Q Consensus 149 ~~------~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~---~-~~~vgE 218 (413)
.. .........+|+||+.||+||+++++++++|++++||||||+|++++++.+||+++...++ + .+++||
T Consensus 166 ~~~~~~~~~~~~~~~~~~~dln~~n~~vr~~~~~~~~~w~~~~gvDGfR~Da~~~~~~~f~~~~~~~~~~~~~~~~~i~E 245 (422)
T d1h3ga3 166 AAQADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLTEYTRRLMAEYPRLNMVGE 245 (422)
T ss_dssp CCHHHHHHHHHSBSSTTSCBBCTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred cccCcccceeecccccCccccccccHHHHHHHhhhHHHHhhheeeeeeeecccccccchhhhhhhhhhhhccccceEEee
Confidence 10 0112235789999999999999999999999988999999999999999999999987653 3 678999
Q ss_pred ccCCCCCCCCCCCCccchhhHhHhhhhc-------cCCCcccccCccchHHHHHHhcc--c---hhhhhhhcCCCCCccc
Q 015125 219 YWDSCNYNSHGLDYNQDSHRQRIINWID-------GTGQLSAAFDFTTKGILQEAVKG--Q---FWRLRDAQGKPPGVMG 286 (413)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~df~~~~~l~~~~~g--~---~~~~~~~~~~~~~~~~ 286 (413)
.|.... ..+..+.. ....+.++++|.+...+..++.. . ...+...... ....
T Consensus 246 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 309 (422)
T d1h3ga3 246 EWSTRV--------------PVVARWQRGKANFDGYTSHLPSLMDFPLVDAMRNALSKTGEENGLNEVYETLSL--DYLY 309 (422)
T ss_dssp CCCSCH--------------HHHHTTSTTCCCTTCCCCCCCEEBCHHHHHHHHHHHHCTTCSSTTHHHHHHHHG--GGGS
T ss_pred ccccch--------------hhhhhhccccccccccccchhhhhhhhHHHHHHHHHhhccccchhHHHHHHHhh--hccc
Confidence 997621 22222211 12235678888888888877622 1 1122222110 0111
Q ss_pred ccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC--------------------Cc------
Q 015125 287 WWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD--------------------WG------ 340 (413)
Q Consensus 287 ~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g--------------------w~------ 340 (413)
..+...++|++|||++|+.+.+.....++++|++++||+||+||||||||+| |.
T Consensus 310 ~~~~~~~~f~~nHD~~R~~~~~~~~~~~~~~a~~~llt~pG~P~iy~G~E~G~~~~~~~~~d~~~r~~~p~~w~~~~~~~ 389 (422)
T d1h3ga3 310 PEPQNLVLFGGNHDMARMFSAAGEDFDRWRMNLVFLMTMPRIPQFYSGDEILMTSTVKGRDDASYRRDFPGGWAGDKANA 389 (422)
T ss_dssp SSGGGSEEESCCTTSCCHHHHTTSCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCCSSSCGGGGSCCCTTSSTTCSSCT
T ss_pred ccccceeeeecccccccccccccccHHHHHHHHHHHHHcCCCcEEEcChhhCCcCCCCCCCCcchhccCccccCcccccC
Confidence 1234678999999999999888777788999999999999999999999975 21
Q ss_pred ----------hhHHHHHHHHHHHHHhCcccCCC
Q 015125 341 ----------DSIHNQIVKLMDVRRQQDIHSRS 363 (413)
Q Consensus 341 ----------~~l~~~i~~L~~lR~~~p~l~~G 363 (413)
.++++++|+|++||+++|+|+.|
T Consensus 390 ~~~~~~~~~~~~~~~~~~~L~~lR~~~paL~~G 422 (422)
T d1h3ga3 390 FSGAGLTSQQRAAQDLVRKLANWRKNQPVIHNG 422 (422)
T ss_dssp TTCTTCCHHHHHHHHHHHHHHHHHTTCHHHHHC
T ss_pred cCccccchhHHHHHHHHHHHHHHHhcCHHhhCC
Confidence 25899999999999999999876
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=100.00 E-value=1.2e-59 Score=463.55 Aligned_cols=315 Identities=15% Similarity=0.265 Sum_probs=241.8
Q ss_pred cccccCCceeEEEeeecCCCCC-------------------------ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCC
Q 015125 18 GAVIRNGREILFQGFNWESCKH-------------------------DWWRNLERKVPDISKSGFTSVWLPPATHSFAPE 72 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~~-------------------------g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~ 72 (413)
+|.+-+. .||||+|.+.|.+. |||+||++||||||+||||+||||||++++++|
T Consensus 4 ~P~w~~~-~viY~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kLdyl~~lGi~~I~l~Pv~~~~~~~ 82 (382)
T d1wzla3 4 TPEWAKE-AVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHH 82 (382)
T ss_dssp CCSGGGG-CCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSSSS
T ss_pred CCccccC-CEEEEEEcchhcCCCCCCCCccccccccccccccCCCCCcCHHHHHHhhHHHHHCCCCEEEECCcCCCCccc
Confidence 4565333 69999999977643 899999999999999999999999999999999
Q ss_pred CCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCC--------cccccCCCCCCCCCCCeecc
Q 015125 73 GYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGG--------KYNRYDGIPLSWDEHAVTSC 144 (413)
Q Consensus 73 gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~--------~y~~~~~~~~~~~~~~~~~~ 144 (413)
||+|.||++|+|+|||+++||+||++||++||+||+|+|+||++.++++... .|..+ ..+.... ...
T Consensus 83 gY~~~~~~~vd~~~Gt~~d~~~lv~~~H~~Gi~vilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~ 157 (382)
T d1wzla3 83 KYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDW----FFIEDFP-VSK 157 (382)
T ss_dssp CCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGG----BCBSSSS-CCC
T ss_pred CCccccccccccCCCCHHHHHHHHHHHHhcccceEeeeeecccccccccccchhhcCcccccccc----ccccccc-ccc
Confidence 9999999999999999999999999999999999999999999998875431 11111 0111110 000
Q ss_pred CCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC---C-CeEEEccc
Q 015125 145 TGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYW 220 (413)
Q Consensus 145 ~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~---~-~~~vgE~~ 220 (413)
............+..+|+||++||+||+++++++++|+ ++||||||+|++++++.++|+++...++ | .+++||.|
T Consensus 158 ~~~~~~~~~~~~~~~~~dLn~~n~~v~~~~~~~~~~w~-~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~~i~e~~ 236 (382)
T d1wzla3 158 TSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDALIVGEIW 236 (382)
T ss_dssp SSCCSBCBSSSSCTTCBBBCTTSHHHHHHHHHHHHHHH-HTTCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCcccccccccccCCccCCCCHHHHHHHHHHHHHHH-HcCCCceeecchhhcchhhhhHHHHHHHhhCCceEEeeecc
Confidence 11111112234467899999999999999999999998 6899999999999999999998887764 4 67899988
Q ss_pred CCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhc-cch--hhh----hhhcCCCCCcccccCCcce
Q 015125 221 DSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK-GQF--WRL----RDAQGKPPGVMGWWPSRAV 293 (413)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~-g~~--~~~----~~~~~~~~~~~~~~p~~~v 293 (413)
...+ .++. ..++.+.+++.+...+.+... +.. ... ..... ......+...+
T Consensus 237 ~~~~------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 294 (382)
T d1wzla3 237 HDAS------------------GWLM-GDQFDSVMNYLFRESVIRFFATGEIHAERFDAELTRARM---LYPEQAAQGLW 294 (382)
T ss_dssp SCCG------------------GGCS-SSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHT---TSCHHHHTTCE
T ss_pred cccc------------------hhhc-ccccchhhhhhHHHHHHHhhhcCccchhhHHHHHHhhhh---cccccccccce
Confidence 6521 1111 124567888888777777653 221 110 11111 11111233568
Q ss_pred ecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC--------------Cc-----hhHHHHHHHHHHHH
Q 015125 294 TFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD--------------WG-----DSIHNQIVKLMDVR 354 (413)
Q Consensus 294 ~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g--------------w~-----~~l~~~i~~L~~lR 354 (413)
+|++|||++|+.+.+..+..++++|++++||+||+||||||||+| |+ +++++++|+|++||
T Consensus 295 ~f~~nHD~~r~~~~~~~~~~~~~~a~~~llt~pG~P~iy~G~E~g~~g~~~~~~r~~~~W~~~~~~~~l~~~~~~L~~lR 374 (382)
T d1wzla3 295 NLLDSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAGATDPDCLRPMIWEEKEQNRGLFEFYKELIRLR 374 (382)
T ss_dssp EESCCTTSCCHHHHTTTCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCGGGSCHHHHHHHHHHHHHH
T ss_pred eeecCCCccchHhhcCCCHHHHHHHHHHHHHcCCCCEEEcCcccCCCCCCCccccCCCCCCccccChHHHHHHHHHHHHH
Confidence 999999999998887777889999999999999999999999985 32 47999999999999
Q ss_pred HhCcccC
Q 015125 355 RQQDIHS 361 (413)
Q Consensus 355 ~~~p~l~ 361 (413)
+++|+|+
T Consensus 375 ~~~paL~ 381 (382)
T d1wzla3 375 HRLASLT 381 (382)
T ss_dssp HHCHHHH
T ss_pred hhCHhhC
Confidence 9999986
|
| >d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Probab=100.00 E-value=1e-59 Score=468.47 Aligned_cols=317 Identities=16% Similarity=0.311 Sum_probs=235.6
Q ss_pred ceeEEEeeecCCCC-----------------------CccHHHHHhhhh--hHHHcCCCEEEcCCCCCC-----------
Q 015125 25 REILFQGFNWESCK-----------------------HDWWRNLERKVP--DISKSGFTSVWLPPATHS----------- 68 (413)
Q Consensus 25 ~~~i~~~f~~~~~~-----------------------~g~~~gi~~~L~--yLk~lGv~~I~L~Pi~~~----------- 68 (413)
+.||||+|...|++ -|||+||++||| |||+||||+|||+||+++
T Consensus 14 ~~viY~i~~drF~~g~~~~d~~~~~~~~~~~~~~~~~gGdl~Gi~~kLd~~YLk~LGv~~I~L~Pi~~~~~~~~~~~~~~ 93 (406)
T d3bmva4 14 TDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLTGMGVTAIWIPQPVENIYAVLPDSTFG 93 (406)
T ss_dssp TCCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHHHHTSTTGGGTCCEEEECCCEEECCCCEEETTTE
T ss_pred cCeEEEechhhccCCCCCCCCCCCccCCCCCccCccCCcCHHHHHHhcCHHHHHHcCCCEEEECCcccccccccCCCCCC
Confidence 36999999998763 289999999999 999999999999999873
Q ss_pred --CCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccc---c------CC---CCC
Q 015125 69 --FAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNR---Y------DG---IPL 134 (413)
Q Consensus 69 --~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~---~------~~---~~~ 134 (413)
.++|||+|.||++|+|+|||+++||+||++||++||+||||+|+||++..+++....... + .. ...
T Consensus 94 ~~~~~~gY~~~d~~~vdp~~Gt~~dfk~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (406)
T d3bmva4 94 GSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTN 173 (406)
T ss_dssp EECSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTT
T ss_pred CChhhcCcccccccccCcccccHHHHHHHHHHHHhccccceeeeecccccccccchhhhcccCccccCCccccccccccc
Confidence 357999999999999999999999999999999999999999999999988754321100 0 00 000
Q ss_pred CCCCCCeeccCCCCCC--CcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhh--
Q 015125 135 SWDEHAVTSCTGGLGN--GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGA-- 210 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~-- 210 (413)
.|.... ....+.. ....+.+.++|+||+++|.||+++++++++|+ ++||||||+|++++++.++|+++.+.+
T Consensus 174 ~~~~~~---~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~~~-~~giDGfR~D~~~~~~~~~~~~~~~~~~~ 249 (406)
T d3bmva4 174 GYFHHY---GGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWL-DMGIDGIRLDAVKHMPFGWQKNFMDSILS 249 (406)
T ss_dssp CCBCCS---CBCCCSSHHHHHHSBSTTEEEBCTTSHHHHHHHHHHHHHHH-HTTCCEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred cccccc---cCccccccccccccccccccccccccHHHHHHHHHHHHHHh-hcCCCccccccccccchhhHHHHHHHHHH
Confidence 010000 0000000 01122346799999999999999999999998 899999999999999999999998765
Q ss_pred -CCCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc---hhhhhhhcCCCCCccc
Q 015125 211 -RPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVMG 286 (413)
Q Consensus 211 -~~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~---~~~~~~~~~~~~~~~~ 286 (413)
++.++++|.|.... .. .....+... ....+++||.+...+...+.+. ...+......... ..
T Consensus 250 ~~~~~~~~e~~~~~~----~~--------~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 315 (406)
T d3bmva4 250 YRPVFTFGEWFLGTN----EI--------DVNNTYFAN-ESGMSLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTAS-DY 315 (406)
T ss_dssp HSCCEEEECCCCCTT----CC--------CHHHHHHHH-HSSSEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHH-HC
T ss_pred hhhcccccccccccc----cc--------ccccccccC-CCccceecchhhHHHHHhhccCcchhHHHHHHHhhhcc-cc
Confidence 46888999886521 01 011122221 1345789999988888887432 2222221110000 00
Q ss_pred ccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC-----------------CchhHHHHHHH
Q 015125 287 WWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD-----------------WGDSIHNQIVK 349 (413)
Q Consensus 287 ~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g-----------------w~~~l~~~i~~ 349 (413)
..+..+++|++|||++|+.+.. ...++++|++++||+||+||||||+|+| |+.++++++|+
T Consensus 316 ~~~~~~~~fl~nHD~~R~~~~~--~~~~~~~a~~~~lt~pG~P~IyyGdE~g~~g~~dp~~r~~~~~~~~~~~~~~~~~~ 393 (406)
T d3bmva4 316 NFINDMVTFIDNHDMDRFYNGG--STRPVEQALAFTLTSRGVPAIYYGTEQYMTGNGDPYNRAMMTSFNTSTTAYNVIKK 393 (406)
T ss_dssp TTGGGCEECSCCSSSCCSCCSS--CSHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCCTTSHHHHHHHH
T ss_pred cchhhhcccccCCchhhhccCC--CHHHHHHHHHHHHHhCCCCEEecChhhCcCCCCChhhhhcCCCCCCChHHHHHHHH
Confidence 1234679999999999998753 5678999999999999999999999986 23579999999
Q ss_pred HHHHHHhCcccC
Q 015125 350 LMDVRRQQDIHS 361 (413)
Q Consensus 350 L~~lR~~~p~l~ 361 (413)
|++||+++|+|+
T Consensus 394 Li~lRk~~paLr 405 (406)
T d3bmva4 394 LAPLRKSNPAIA 405 (406)
T ss_dssp HTTHHHHCHHHH
T ss_pred HHHHHhhChhhc
Confidence 999999999985
|
| >d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=8e-60 Score=459.92 Aligned_cols=300 Identities=16% Similarity=0.217 Sum_probs=220.7
Q ss_pred ceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-----------CCCCCcccCCCCCCCCCCHHHHH
Q 015125 25 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA-----------PEGYLPQNLYSLNSSYGSEHLLK 93 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-----------~~gY~~~d~~~id~~~Gt~~~~~ 93 (413)
++||||+|+|+ |++|+++|||||+||||+||||||++++. ||||+|.||+.|+|+|||++|||
T Consensus 5 ~~~i~~~f~~~------f~~i~~~ldyl~~lGv~aIwl~Pi~~~~~~~~~~~~~~~~y~gY~~~dy~~vd~~~Gt~~df~ 78 (344)
T d1ua7a2 5 SGTILHAWNWS------FNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEFK 78 (344)
T ss_dssp TSCEEECTTBC------HHHHHHTHHHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEETTTEEHHHHH
T ss_pred CCeEEEecCCc------HHHHHHhHHHHHHcCCCEEEeCCCeeCCCcCCCCCCCCCCccccccccCCCCCCCCCCHHHHH
Confidence 46999999999 99999999999999999999999998752 68999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCC-CeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHH
Q 015125 94 ALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEH-AVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRK 172 (413)
Q Consensus 94 ~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~ 172 (413)
+||++||++||+||+|+|+||++.++++....+..+.. .++.. ....+.+. .....+.+.++||||++||+||+
T Consensus 79 ~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~l~Dln~~np~Vr~ 153 (344)
T d1ua7a2 79 EMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIPN---WTHGNTQIKNWSDR--WDVTQNSLLGLYDWNTQNTQVQS 153 (344)
T ss_dssp HHHHHHHTTTCEEEEEECCSBCCSCTTTSCHHHHTSTT---CEEECCBCCCTTCH--HHHHHSBBTTBCEECTTSHHHHH
T ss_pred HHHHHhcccceeEeeccceeeecCCCchhhccccCCcc---cccCCCCCCCCCCC--cCcccCccccCCccccCChHHHH
Confidence 99999999999999999999999999987654322211 11111 01111111 11233456789999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEeecccCCCcH----HHHHHHHHhhC---CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhh
Q 015125 173 DIIAWLRWLRNTVGFQDFRFDFARGYSA----KYVKEYIEGAR---PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWI 245 (413)
Q Consensus 173 ~l~~~~~~w~~~~gvDGfR~D~a~~i~~----~~~~~~~~~~~---~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (413)
+|++++++|+ ++||||||+|+|+||+. .+++++...++ +.|++||+|.+.+ .....|.
T Consensus 154 ~l~~~~~~w~-~~giDGfR~Daakhv~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~--------------~~~~~~~ 218 (344)
T d1ua7a2 154 YLKRFLERAL-NDGADGFRFDAAKHIELPDDGSYGSQFWPNITNTSAEFQYGEILQDSA--------------SRDAAYA 218 (344)
T ss_dssp HHHHHHHHHH-HTTCCEEEETTGGGSCCTTSGGGCCSHHHHHTCSSCSEEEECCCCSTT--------------CCHHHHH
T ss_pred HHHHHHHHHH-hcCCCeEEEeeeeccCchhhHHHHHHHHHHHHhcCCceEEEEEeeccc--------------hhhhhhc
Confidence 9999999999 78999999999999985 45556655544 4789999997532 1222333
Q ss_pred ccCCCcccccCccchHHHHHHhccchhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCC--CChhHHHHHHHHHh
Q 015125 246 DGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWP--FPSNHIMEGYAYIL 323 (413)
Q Consensus 246 ~~~~~~~~~~df~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~--~~~~~~~la~a~ll 323 (413)
+ .....+|.+...+++++.+....+...... .....+.++++|++|||+.|+..... ....++++|+|+++
T Consensus 219 ~----~~~~~~~~f~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~v~f~~NHD~~r~~~~~~~~~~~~~~~la~a~ll 291 (344)
T d1ua7a2 219 N----YMDVTASNYGHSIRSALKNRNLGVSNISHY---ASDVSADKLVTWVESHDTYANDDEESTWMSDDDIRLGWAVIA 291 (344)
T ss_dssp T----TSEEECHHHHHHHHHHHHHTCCCHHHHSSC---SSSSCGGGEEECSSCHHHHHSTTCSSTTCCHHHHHHHHHHHH
T ss_pred c----CCccccccccchHHHHHhcCCcchhhHHHH---HhcCCHhhhchHhhcCCCCCCcccccccCCHHHHHHHHHHHH
Confidence 2 223455556667777764332222221110 01123447899999999998755432 25677899999999
Q ss_pred cCC-CeeEEecCcccCCch--------------h--HHHHHHHHHHHHHhC
Q 015125 324 MHP-GIPSVFYDHFYDWGD--------------S--IHNQIVKLMDVRRQQ 357 (413)
Q Consensus 324 ~~p-GiP~Iy~G~E~gw~~--------------~--l~~~i~~L~~lR~~~ 357 (413)
++| |+||||||+|+|-.+ + -...+++|+++|+..
T Consensus 292 ~~~~G~P~iY~G~E~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~frn~~ 342 (344)
T d1ua7a2 292 SRSGSTPLFFSRPEGGGNGVRFPGKSQIGDRGSALFEDQAITAVNRFHNVM 342 (344)
T ss_dssp TSSSSEEEEECCCTTCBTTBSCCSSCBTBSCCCGGGGCHHHHHHHHHHHHH
T ss_pred HhCCCeEEEEechhccCCCCCCCccccCCCCcccccccHHHHHHHHHHhhc
Confidence 887 999999999986321 1 135688999999864
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.9e-58 Score=456.42 Aligned_cols=313 Identities=20% Similarity=0.280 Sum_probs=232.8
Q ss_pred eeEEEeeecCCCCC-----ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCKH-----DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-----g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h 100 (413)
+||||+|.++|++. |||+||++||||||+||||+|||+||+++.++|||+|.||++|+|+|||++||++||++||
T Consensus 1 ~v~Yei~~~~F~d~~~dg~Gd~~gi~~kLdyl~~LGv~~I~l~Pi~~~~~~~GY~~~d~~~vd~~~Gt~~d~~~lv~~~h 80 (391)
T d1lwha2 1 MIGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFKAEYGSEREFKEMIEAFH 80 (391)
T ss_dssp CCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHTTCSEEEECCCEECSSSSCCSCSEEEEECGGGCCHHHHHHHHHHHH
T ss_pred CEEEEEccccccCCCCCCccCHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCCCccCCCCcCcccCCHHHHHHHHHHHH
Confidence 48999999998864 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEEEEccccCcCCCCCCC------Ccccc---cCCC------CCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCC
Q 015125 101 QHKVRAMADIVINHRVGTTQGHG------GKYNR---YDGI------PLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDH 165 (413)
Q Consensus 101 ~~Gi~VilD~V~NH~~~~~~~~~------~~y~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~ 165 (413)
++||+||+|+|+||++..++++. +.|.. +... ...|........ ...+..........+|+||+
T Consensus 81 ~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pdln~ 159 (391)
T d1lwha2 81 DSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHP-LEDGRFYRGLFGPFSPDLNY 159 (391)
T ss_dssp HTTCEEEEEECTTBCCTTSHHHHHHHTTCHHHHTTBCBCCTTCCTTCBCSSSCCBCEEE-CTTSCEEECTTCTTSCBBCT
T ss_pred hcCCEEeecccccccccccccccccccCCccccccceecCCccccCccccCCCCccccc-cCCCcccccccCCcCCcccc
Confidence 99999999999999999887432 11111 1100 001111100000 00011122223467999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcH------HHHHHHHHhhCCCeEEEcccCCCCCCCCCCCCccchhhH
Q 015125 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA------KYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQ 239 (413)
Q Consensus 166 ~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~------~~~~~~~~~~~~~~~vgE~~~~~~~~~~~~~~~~~~~~~ 239 (413)
+||+||+++++++++|+ ++||||||+|+|++++. .+|+++.++++ .+.++|.|..... ..
T Consensus 160 ~n~~v~~~i~~~~~~w~-e~gvDGfR~Daa~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~------------~~ 225 (391)
T d1lwha2 160 DNPQVFDEMKRLVLHLL-DMGVDGFRFDAAKHMRDTIEQNVRFWKYFLSDLK-GIFLAEIWAEARM------------VD 225 (391)
T ss_dssp TSHHHHHHHHHHHHHHH-HHTCCEEEETTGGGSSSSHHHHHHHHHHHHTTCC-SEEEECCCSCSSS------------HH
T ss_pred ccchhhHHHHHHHHHHh-hcCCCcceechHHHHHHhhhhhhHHHHHHHHHhh-hhhhhhhhcccce------------ee
Confidence 99999999999999998 89999999999999984 45666666655 4778998865210 01
Q ss_pred hHhhhhccCCCcccccCccchHHHHHHhc-cchhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCC-ChhHHHH
Q 015125 240 RIINWIDGTGQLSAAFDFTTKGILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPF-PSNHIME 317 (413)
Q Consensus 240 ~l~~~~~~~~~~~~~~df~~~~~l~~~~~-g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~-~~~~~~l 317 (413)
... ..+..+++|.+...+..++. +....+....... ....+...++|++|||+.|+.+.... ..+++++
T Consensus 226 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~f~~nhD~~~~~~~~~~~~~~~~~~ 296 (391)
T d1lwha2 226 EHG------RIFGYMLNFDTSHCIKEAVWKENTRVLIESIERA---VIAKDYLPVNFTSNHDMSRLASFEGGFSKEKIKL 296 (391)
T ss_dssp HHH------HHHEEEECHHHHHHHHHHHHHTCTHHHHHHHHHH---TSSCSSEEEEESCCTTSCCGGGGGGCCCHHHHHH
T ss_pred ccc------cccCceecccHHHHHHHHHhhccHHHHHHHHHhh---cccCCcccccccccccccccccccccchhhHHHH
Confidence 111 12356788888877777763 2222232222100 11123467999999999998876543 5678999
Q ss_pred HHHHHhcCCCeeEEecCcccC------------------Cc--------------------------------hhHHHHH
Q 015125 318 GYAYILMHPGIPSVFYDHFYD------------------WG--------------------------------DSIHNQI 347 (413)
Q Consensus 318 a~a~ll~~pGiP~Iy~G~E~g------------------w~--------------------------------~~l~~~i 347 (413)
|++++||+||+||||||||+| |+ .++++++
T Consensus 297 a~~lllt~pG~P~IyyGdE~G~~~~~~~~~~~~~r~pm~W~~~~~~~~~~~~~~~~~~~~~~~~nve~q~~~~~s~~~~~ 376 (391)
T d1lwha2 297 SISILFTLPGVPLVFYGDELGMKGVYQKPNTEVVLDPFPWNESMCVEGQTFWKWPAYNGPFSGISVEYQKRDPDSILSHT 376 (391)
T ss_dssp HHHHHTTSSSEEEEETTGGGTCCCCCCSSCGGGGSCCCCSSTTSCSTTCCCSSCCSSCCSSSSCSHHHHTTCTTSHHHHH
T ss_pred HHHHhhcCCCCCEEecchhcCCcCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcCCCCcccccCHHHHHhCchHHHHHH
Confidence 999999999999999999975 32 1299999
Q ss_pred HHHHHHHHhCcccCC
Q 015125 348 VKLMDVRRQQDIHSR 362 (413)
Q Consensus 348 ~~L~~lR~~~p~l~~ 362 (413)
|+|++|||+||+|.+
T Consensus 377 ~~Li~lRk~~~al~r 391 (391)
T d1lwha2 377 LGWTRFRKENQWIDR 391 (391)
T ss_dssp HHHHHHHHTCGGGGG
T ss_pred HHHHHHHhhChhhcC
Confidence 999999999999863
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Probab=100.00 E-value=3.2e-59 Score=465.14 Aligned_cols=322 Identities=16% Similarity=0.277 Sum_probs=233.0
Q ss_pred eeEEEeeecCCCCC--------------------------ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC---------C
Q 015125 26 EILFQGFNWESCKH--------------------------DWWRNLERKVPDISKSGFTSVWLPPATHSF---------A 70 (413)
Q Consensus 26 ~~i~~~f~~~~~~~--------------------------g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~---------~ 70 (413)
.||||+|...|++. |||+||++||||||+||||+||||||+++. +
T Consensus 9 ~v~Y~i~~drF~~gd~~~~~~~~~~~~~~~~~~~~~~~~gGd~~gi~~kLdyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~ 88 (407)
T d1qhoa4 9 DVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDTLAGTDNTG 88 (407)
T ss_dssp CCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHTHHHHHHHTCCEEEECCCEEECSSCSSTTCCC
T ss_pred CEEEEechhhhcCCCCCCCcccccccccCCcccccCccCCcCHHHHHHHHHHHHHcCCCEEEeCccccCCcccCCCCCCC
Confidence 69999999877631 899999999999999999999999999753 4
Q ss_pred CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcc------cccCCCCCCCCCCC---e
Q 015125 71 PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKY------NRYDGIPLSWDEHA---V 141 (413)
Q Consensus 71 ~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y------~~~~~~~~~~~~~~---~ 141 (413)
+|||+|.||++|+|+|||+++||+||++||++||+||||+|+||++..+++..... .........|.... .
T Consensus 89 ~~gY~~~d~~~id~~~Gt~~d~k~Lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (407)
T d1qhoa4 89 YHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDATKGYF 168 (407)
T ss_dssp TTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEECSSSCTTTCCB
T ss_pred CCceeeeecCCCCCCCCCHHHHHHHHHHhhhcccceeeccccccccCCccccccccccCcccccCccccccccccccccc
Confidence 69999999999999999999999999999999999999999999998776432111 00000000011000 0
Q ss_pred eccC--CCCCC-------CcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC-
Q 015125 142 TSCT--GGLGN-------GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR- 211 (413)
Q Consensus 142 ~~~~--~~~~~-------~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~- 211 (413)
.... ..|.. .........+|+||+.||+||+++++++++|+ ++||||||+|++++++.+||+++.++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~-~~gvDGfR~D~~~~~~~~f~~~~~~~i~~ 247 (407)
T d1qhoa4 169 HHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLV-AHGADGLRIDAVKHFNSGFSKSLADKLYQ 247 (407)
T ss_dssp CCSCBCSCTTCHHHHHHSBCEETTTEEEEEBCTTSHHHHHHHHHHHHHHH-HTTCCEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred cccCCCCCcccccccccccccCCccccCchhhhhhhhHHHHHHHhHHHHh-hhcccccccccccccchhHHHHHHHHHHh
Confidence 0000 00000 00111234579999999999999999999999 7999999999999999999999988765
Q ss_pred --CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhcc---chhhhhhhcCCCCCccc
Q 015125 212 --PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG---QFWRLRDAQGKPPGVMG 286 (413)
Q Consensus 212 --~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g---~~~~~~~~~~~~~~~~~ 286 (413)
+.+++||+|...+. ... ......+... ....+++|.+...+...+.. ....+....... ....
T Consensus 248 ~~~~~~~gE~~~~~~~------~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 315 (407)
T d1qhoa4 248 KKDIFLVGEWYGDDPG------TAN---HLEKVRYANN--SGVNVLDFDLNTVIRNVFGTFTQTMYDLNNMVNQT-GNEY 315 (407)
T ss_dssp HCCCEEEECCCCCCTT------STT---HHHHHHHHHH--SSCEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHH-HHHC
T ss_pred ccCcceeeeecCCChh------hhH---HHHhhccccc--cccceehhhHHHHHHHHhhhcchhhhHHHHHHHHh-hhcc
Confidence 57899999976321 111 0111122222 23456777777777766522 122222211100 0001
Q ss_pred ccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccCC-----------------chhHHHHHHH
Q 015125 287 WWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDW-----------------GDSIHNQIVK 349 (413)
Q Consensus 287 ~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~gw-----------------~~~l~~~i~~ 349 (413)
..+...++|++|||++|+.+... +..++++|++++|++||+||||||||+|. ..++++++++
T Consensus 316 ~~~~~~~~f~~nHD~~R~~~~~~-~~~~~~~a~a~ll~~pGiP~iyyGdE~G~~g~~d~~~r~~~~~~~~~~~~~~~~~~ 394 (407)
T d1qhoa4 316 KYKENLITFIDNHDMSRFLSVNS-NKANLHQALAFILTSRGTPSIYYGTEQYMAGGNDPYNRGMMPAFDTTTTAFKEVST 394 (407)
T ss_dssp TTGGGCEECSCCTTSCCHHHHCC-CHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTTTCCCCCCCCTTSHHHHHHHH
T ss_pred ccchhhceecccCCccccccccC-CHHHHHHHHHHHHHcCCCcEEecCHhhCCCCCCCccccccCCcccCChHHHHHHHH
Confidence 12346789999999999888765 67789999999999999999999999862 3579999999
Q ss_pred HHHHHHhCcccC
Q 015125 350 LMDVRRQQDIHS 361 (413)
Q Consensus 350 L~~lR~~~p~l~ 361 (413)
|++||+++|+|+
T Consensus 395 L~~lR~~~paLr 406 (407)
T d1qhoa4 395 LAGLRRNNAAIQ 406 (407)
T ss_dssp HHHHHHHCHHHH
T ss_pred HHHHHhhCHhhC
Confidence 999999999986
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Probab=100.00 E-value=2.7e-58 Score=456.58 Aligned_cols=314 Identities=19% Similarity=0.319 Sum_probs=239.7
Q ss_pred ceeEEEeeecCCCCC-----ccHHHHHhhhhhH--------HHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHH
Q 015125 25 REILFQGFNWESCKH-----DWWRNLERKVPDI--------SKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHL 91 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~-----g~~~gi~~~L~yL--------k~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~ 91 (413)
..||||+|.++|+++ |||+||++||||| |+||||+||||||++++++|||+|.||++|||+||++++
T Consensus 4 ~~v~Y~~~~~~f~d~~~~~~Gd~~g~~~kLdyl~~~~~~~i~~LGv~~i~l~Pi~~~~~~~GY~~~d~~~vd~~~G~~~d 83 (409)
T d1wzaa2 4 HGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKINPDYGTLED 83 (409)
T ss_dssp CCCEEEECGGGSCCSSSSSCCCHHHHHHTHHHHCCSCTTCCSSCCCSEEEECCCEECSSSSCCSCSEEEEECGGGCCHHH
T ss_pred ccEEEEEecchhcCCCCCCCcCHHHHHHhccccccccccHHhhcCccEEEECCCCCCCCCCCcCcccCCCcCcccCCHHH
Confidence 369999999998776 8999999999998 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCCCCCC----------cccccCCCCCCCCCCCeeccC-----CCCCCCcCCCC
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGHGG----------KYNRYDGIPLSWDEHAVTSCT-----GGLGNGSTGDN 156 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~----------~y~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 156 (413)
||+||++||++||+||+|+|+||++.++++... .|..+.+ .+.......... ...........
T Consensus 84 lk~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (409)
T d1wzaa2 84 FHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAG--PDTDTKETKLDGGRVWHYSPTGMYYGYF 161 (409)
T ss_dssp HHHHHHHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCC--SCCCCCBCSSSCBCSEEEETTEEEECSS
T ss_pred HHHHHHHHHhcCCEEEEecccccccccCcchhhhhccccccccccccccc--cccccCccccCCCccccccccccccccC
Confidence 999999999999999999999999999864221 1222221 111100000000 00011123345
Q ss_pred CCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc--------HHHHHHHHHhhC---CCeEEEcccCCCCC
Q 015125 157 FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS--------AKYVKEYIEGAR---PIFSVGEYWDSCNY 225 (413)
Q Consensus 157 ~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~--------~~~~~~~~~~~~---~~~~vgE~~~~~~~ 225 (413)
+..+|+||+.||+||+++++++++|+ ++||||||+|+++++. ..+|+++.+.++ +.++++|.|..
T Consensus 162 ~~~~~dln~~n~~vr~~~~~~~~~wi-~~gVDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~--- 237 (409)
T d1wzaa2 162 WSGMPDLNYNNPEVQEKVIGIAKYWL-KQGVDGFRLDGAMHIFPPAQYDKNFTWWEKFRQEIEEVKPVYLVGEVWDI--- 237 (409)
T ss_dssp CTTSCBBCTTSHHHHHHHHHHHHHHH-HTTCCEEEEECCCTTSCGGGTTHHHHHHHHHHHHHTTTSCCEEEEECCSC---
T ss_pred CCCCcccccccHHHHHHHHHHHHHHH-HcCCCeecccchhhcccchhccchhHHHHHHHHhhccCCCcEEEEEeecC---
Confidence 68899999999999999999999999 6799999999999984 468998888765 57889998875
Q ss_pred CCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhc-cchh-------hhhhhcCCCCCcccccCCcceeccc
Q 015125 226 NSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK-GQFW-------RLRDAQGKPPGVMGWWPSRAVTFLD 297 (413)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~-g~~~-------~~~~~~~~~~~~~~~~p~~~v~fle 297 (413)
.+.+..+.. .++...+++.+...+..... +... .+..... ......+...++|++
T Consensus 238 ------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~f~~ 300 (409)
T d1wzaa2 238 ------------SETVAPYFK--YGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYD---REVGFGNYIDAPFLT 300 (409)
T ss_dssp ------------HHHHGGGGT--TTCSEEBCHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH---HHTCTTSCCCBCBSC
T ss_pred ------------ccchhhhhh--cccccchhhhHHHHHHHHHhccCccchHHHHHHHHHhhh---hhhcccccccccccc
Confidence 234444443 35678888887766666542 2111 1111100 001112335679999
Q ss_pred CCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC---------------Cc----------------------
Q 015125 298 NHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD---------------WG---------------------- 340 (413)
Q Consensus 298 nHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g---------------w~---------------------- 340 (413)
|||++|+.+.++.+..+++++++++||+||+||||||||+| |.
T Consensus 301 nhD~~r~~~~~~~~~~~~~~~~~~~lt~pG~P~iy~G~E~G~~~~~~~~~~R~p~~w~~~~~~~~~~~~~~~~~~~~~~~ 380 (409)
T d1wzaa2 301 NHDQNRILDQLGQDRNKARVAASIYLTLPGNPFIYYGEEIGMRGQGPHEVIREPFQWYNGSGEGETYWEPAMYNDGFTSV 380 (409)
T ss_dssp CTTSCCHHHHTTTCHHHHHHHHHHHTTSSSCCEEETTGGGTCCCCSSHHHHTCCCCCSSSCCTTCCCSSCCTTTTTTCCH
T ss_pred ccccCccccccCCchHHHHHHHHHHHhCCCCCEEecChhhCccCCCCCccccCCCCCCCCCCCCCCcCCcccccccccCH
Confidence 99999999888878889999999999999999999999985 21
Q ss_pred -------hhHHHHHHHHHHHHHhCcccC
Q 015125 341 -------DSIHNQIVKLMDVRRQQDIHS 361 (413)
Q Consensus 341 -------~~l~~~i~~L~~lR~~~p~l~ 361 (413)
.++++++|+||+||+++|+|+
T Consensus 381 ~~~~~~~~s~~~~~~~Li~lRk~~pal~ 408 (409)
T d1wzaa2 381 EQEEKNLDSLLNHYRRLIHFRNENPVFY 408 (409)
T ss_dssp HHHTTCTTSHHHHHHHHHHHHHHCTHHH
T ss_pred HHHhhCcHHHHHHHHHHHHHHhhCchhc
Confidence 138999999999999999985
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Probab=100.00 E-value=1.4e-56 Score=441.92 Aligned_cols=308 Identities=20% Similarity=0.297 Sum_probs=228.7
Q ss_pred ccccCCceeEEEeeecCCCCCccHHHHHhhhh-hHHHcCCCEEEcCCCCCCCC------CCCCCcccCCCCCCCCCCHHH
Q 015125 19 AVIRNGREILFQGFNWESCKHDWWRNLERKVP-DISKSGFTSVWLPPATHSFA------PEGYLPQNLYSLNSSYGSEHL 91 (413)
Q Consensus 19 ~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~-yLk~lGv~~I~L~Pi~~~~~------~~gY~~~d~~~id~~~Gt~~~ 91 (413)
|..+++++||||+|+|+ |++|+++|+ |||+||||+||||||.+++. ++||+|.| |+|+|+|||++|
T Consensus 4 ~~~~~~~~~i~~~f~W~------~~~i~~~~~~yl~~lG~tai~l~P~~e~~~~~~~~~~~~Y~~~d-Y~id~~~Gt~~d 76 (378)
T d1jaea2 4 ANFASGRNSIVHLFEWK------WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVS-YIINTRSGDESA 76 (378)
T ss_dssp CCCCTTCEEEEEETTCC------HHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCC-SCSEETTEEHHH
T ss_pred CCCCCCCceEEEeccCc------HHHHHHHHHHHHHHhCCCEEEeCcccccCCCCCCCCccccCCcc-ceeCCCCCCHHH
Confidence 56788899999999999 999999998 89999999999999998752 47899999 589999999999
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCCCCCC-cccccCC--------CCCCCCCCCeeccCCCCC--CCcCCCCCCCC
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGHGG-KYNRYDG--------IPLSWDEHAVTSCTGGLG--NGSTGDNFHGV 160 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~-~y~~~~~--------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 160 (413)
||+||++||++||+||||+|+||++.++++... ....... ...++.+.+ .. ..+. .....+.+..+
T Consensus 77 f~~LV~~aH~~GI~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~l 153 (378)
T d1jaea2 77 FTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDFHSPC--EV-NNYQDADNVRNCELVGL 153 (378)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSBCCSSCEEBTTSCEEBTTTTBBTTTTBCGGGBCCCC--BC-CCTTCHHHHHHSBBTTB
T ss_pred HHHHHHHHHhcCceeeeeecccccccccCCCccccccCCCcccCcCCCCCccccCCCC--Cc-CCCCCcccccccccccc
Confidence 999999999999999999999999998764321 1100000 000111110 00 0111 11223456789
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCC------------CeEEEcccCCCCCCCC
Q 015125 161 PNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARP------------IFSVGEYWDSCNYNSH 228 (413)
Q Consensus 161 ~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~------------~~~vgE~~~~~~~~~~ 228 (413)
||||++||+||++|++++++|+ ++||||||+|+|++++..+++++.+.++. .+++||+|....
T Consensus 154 ~Dln~~np~V~~~l~~~~~~w~-e~gvDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~---- 228 (378)
T d1jaea2 154 RDLNQGSDYVRGVLIDYMNHMI-DLGVAGFRVDAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLGG---- 228 (378)
T ss_dssp CBBCTTSHHHHHHHHHHHHHHH-HTTCCEEEETTGGGSCHHHHHHHHHTCCCCCGGGTCCTTCCCEEEEECCCCSS----
T ss_pred CccccCCHHHHHHHHHHHHHHH-HhCCCceeeeeecccCHHHHHHHHHhhhhhccccccccccccceeeehhcccc----
Confidence 9999999999999999999998 89999999999999999999999988652 478999887522
Q ss_pred CCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc--hhhhhhhcCCCCCcccccCCcceecccCCCCCcCCC
Q 015125 229 GLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ--FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQA 306 (413)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~ 306 (413)
.. +..+.. ..+.++++|.+...+..++.+. ...+..... ......+.++++|++|||++|+.+
T Consensus 229 --~~--------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~v~Fl~NHD~~R~~~ 293 (378)
T d1jaea2 229 --EA--------ISKNEY--TGFGCVLEFQFGVSLGNAFQGGNQLKNLANWGP---EWGLLEGLDAVVFVDNHDNQRTGG 293 (378)
T ss_dssp --SS--------CCGGGT--TTSSEEECHHHHHHHHHHHTTTSCGGGGGGCSG---GGTCCCGGGEEECSCCTTHHHHSC
T ss_pred --cc--------ccchhc--cccchhcchhhhhhhhhhhccCccHHHHHHHhh---hhccCCccceeEeeccCCCCCcCC
Confidence 00 001111 1345788999888888887432 233332111 111223457899999999999754
Q ss_pred CC---CCChhHHHHHHHHHhcCC-CeeEEecCcccC----------------------------CchhH-HHHHHHHHHH
Q 015125 307 HW---PFPSNHIMEGYAYILMHP-GIPSVFYDHFYD----------------------------WGDSI-HNQIVKLMDV 353 (413)
Q Consensus 307 ~~---~~~~~~~~la~a~ll~~p-GiP~Iy~G~E~g----------------------------w~~~l-~~~i~~L~~l 353 (413)
.. ..+..+.++|+++|||+| |+|+||+|.|+. |.++. ...||.|++|
T Consensus 294 ~~~~~~~~~~~~~lA~af~lt~p~G~P~iy~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~w~~~~r~~~i~~m~~f 373 (378)
T d1jaea2 294 SQILTYKNPKPYKMAIAFMLAHPYGTTRIMSSFDFTDNDQGPPQDGSGNLISPGINDDNTCSNGYVCEHRWRQVYGMVGF 373 (378)
T ss_dssp TTCCCTTSHHHHHHHHHHHHHSCSSEEEEEECBCCSSTTCCCCBCTTSCBCCCEECTTSCEETTBCCGGGSHHHHHHHHH
T ss_pred CcccccCCHHHHHHHHHHHHHcCCCEEEEEeccccCCCCCCCCCCCCCCCCCCCcCccCCCCCHHHHHHHHHHHHHHHHH
Confidence 32 235678999999999999 999999998862 33332 5789999999
Q ss_pred HHh
Q 015125 354 RRQ 356 (413)
Q Consensus 354 R~~ 356 (413)
|++
T Consensus 374 rn~ 376 (378)
T d1jaea2 374 RNA 376 (378)
T ss_dssp HHH
T ss_pred hcc
Confidence 986
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=100.00 E-value=1.8e-55 Score=430.16 Aligned_cols=305 Identities=18% Similarity=0.303 Sum_probs=222.6
Q ss_pred eeEEEeeecCCCCCccHHHHHhhh-hhHHHcCCCEEEcCCCCCCCC----CCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCKHDWWRNLERKV-PDISKSGFTSVWLPPATHSFA----PEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L-~yLk~lGv~~I~L~Pi~~~~~----~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h 100 (413)
.+|||+|+|+ |+.|++++ +|||+||||+||||||+++++ +|||+|.| |+|+|+|||++|||+||++||
T Consensus 3 ~~~~~~f~w~------~~~i~~~~~dyl~~lG~tai~l~P~~~~~~~~~~y~gY~~~d-y~vd~~~Gt~~dfk~LV~~aH 75 (354)
T d1g94a2 3 TTFVHLFEWN------WQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVS-YELQSRGGNRAQFIDMVNRCS 75 (354)
T ss_dssp CCEEEETTCC------HHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSC-SCSCBTTBCHHHHHHHHHHHH
T ss_pred cceEEcccCC------HHHHHHHHHHHHHHcCCCEEEeCcCccCCCCCCCcccCCCCc-ceeCCCCCCHHHHHHHHHHHh
Confidence 4799999999 99998888 699999999999999999764 47999999 589999999999999999999
Q ss_pred HcCCEEEEEEccccCcCCCCCCCCcccccCC-----CCCCCCCCCeeccCC--CCCCCcCCCCCCCCCcCCCCCHHHHHH
Q 015125 101 QHKVRAMADIVINHRVGTTQGHGGKYNRYDG-----IPLSWDEHAVTSCTG--GLGNGSTGDNFHGVPNIDHTQHFVRKD 173 (413)
Q Consensus 101 ~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dln~~~~~vr~~ 173 (413)
++||+||||+|+||++.++++.......+.. ...+++..+...... ........+.+.++|+||++||+||++
T Consensus 76 ~~GI~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dln~~n~~Vr~~ 155 (354)
T d1g94a2 76 AAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQDFHESCTINNSDYGNDRYRVQNCELVGLADLDTASNYVQNT 155 (354)
T ss_dssp HTTCEEEEEEECSEECSSCEEBTTSCEEBTTBCSSCCGGGBCCCCBCCTTHHHHCHHHHHHSBSTTCEEBCTTSHHHHHH
T ss_pred ccCceeEEEeeccccccccCCCcccccccccCCCcCCccccccCCCCCCccccccccceeccccCCCCccccCCHHHHHH
Confidence 9999999999999999988654321111110 011122211110000 000001234567899999999999999
Q ss_pred HHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCC-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcc
Q 015125 174 IIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARP-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLS 252 (413)
Q Consensus 174 l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (413)
|++++++|+ ++||||||+|+++++++++|+++.+.+++ .++++|.|...+- ...+ ..+. +..
T Consensus 156 l~d~~~~~~-e~gvdGfR~Da~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~---~~~~---------~~~~----~~~ 218 (354)
T d1g94a2 156 IAAYINDLQ-AIGVKGFRFDASKHVAASDIQSLMAKVNGSPVVFQEVIDQGGE---AVGA---------SEYL----STG 218 (354)
T ss_dssp HHHHHHHHH-HHTCCEEEEETGGGSCHHHHHHHHHTSCSCCEEEECCCCSSCC---SSCG---------GGGG----GGS
T ss_pred HHHHHHHhh-hhccchhhccchhhCCHHHHHHHHhhhcccceeEEEEeccCcc---cccc---------hhhc----CCC
Confidence 999999998 89999999999999999999999999886 6789998875320 0000 0111 134
Q ss_pred cccCccchHHHHHHhc-cchhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCC-----ChhHHHHHHHHHhcCC
Q 015125 253 AAFDFTTKGILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPF-----PSNHIMEGYAYILMHP 326 (413)
Q Consensus 253 ~~~df~~~~~l~~~~~-g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~-----~~~~~~la~a~ll~~p 326 (413)
.+++|.+...+..++. ++...+... .. ......+.++|+|++|||++|+.+.... ...+.++|+++||++|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~--~~~~~~~~~~v~Fl~NHD~~R~~~~~~~~~~~~~~~~~~lA~afil~~p 295 (354)
T d1g94a2 219 LVTEFKYSTELGNTFRNGSLAWLSNF-GE--GWGFMPSSSAVVFVDNHDNQRGHGGAGNVITFEDGRLYDLANVFMLAYP 295 (354)
T ss_dssp EEECHHHHHHHHHHHHHSCGGGGGGT-TG--GGTCCCGGGEEECSCCTTGGGTSSCCTTSCCGGGTHHHHHHHHHHHHSC
T ss_pred cccchhhcchhhhHhhhhhHHHHHHH-hh--hhccCCccceEEeecccccccccccCcccccccchHHHHHHHHHHHHcC
Confidence 5678777777776663 333333321 11 1112234588999999999998765432 3467899999999998
Q ss_pred -CeeEEecCcccC------------------------Cchh-HHHHHHHHHHHHHhC
Q 015125 327 -GIPSVFYDHFYD------------------------WGDS-IHNQIVKLMDVRRQQ 357 (413)
Q Consensus 327 -GiP~Iy~G~E~g------------------------w~~~-l~~~i~~L~~lR~~~ 357 (413)
|+|+||||+|++ |..+ -...|+.|++||+..
T Consensus 296 ~G~P~iyyG~ef~~~~~~~~~~~~~~~~~~~~~~~~~W~~~hr~~~i~~mi~fr~~~ 352 (354)
T d1g94a2 296 YGYPKVMSSYDFHGDTDAGGPNVPVHNNGNLECFASNWKCEHRWSYIAGGVDFRNNT 352 (354)
T ss_dssp SSEEEEEECBCCTTCTTCCCCSSCSEETTEECBSSSSBCCGGGSHHHHHHHHHHHHS
T ss_pred CCEEEEEeecCcCCCCcCCCCCCCccCCCCCCcCCCCchhhhhHHHHHHHHHhhccc
Confidence 999999999984 2211 246799999999874
|
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=9e-56 Score=441.77 Aligned_cols=317 Identities=15% Similarity=0.142 Sum_probs=217.3
Q ss_pred CceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 015125 24 GREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~ 101 (413)
.+.||||++.++|.++|||+||+++|||||+||||+|||+||++.+ .+|||+|.||++|+|+||+.+||++||++||+
T Consensus 15 ~~~viYe~~~~~f~~~Gd~~g~~~~ldyl~~LGv~~i~L~Pv~~~~~~~~~GY~~~d~~~vdp~~G~~~d~~~lv~~aH~ 94 (420)
T d2bhua3 15 ADCVFYEVHVGTFTPEGTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLMALVDAAHR 94 (420)
T ss_dssp GGCCEEEECHHHHSSSCSHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGCCHHHHHHHHHHHHH
T ss_pred cccEEEEEehhhcCCCCCHHHHHHhHHHHHHcCCCEEEeCCCCcCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHh
Confidence 3469999999999999999999999999999999999999998755 57999999999999999999999999999999
Q ss_pred cCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHH
Q 015125 102 HKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWL 181 (413)
Q Consensus 102 ~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w 181 (413)
+||+||+|+|+||++.++++.... . +..|.. .+. ....|+||+.||+||++|++++++|
T Consensus 95 ~gi~VilD~V~NH~~~~~~~~~~~----~--~~~~~~----~~~-----------~~~~~dlN~~np~v~~~~~~~~~~W 153 (420)
T d2bhua3 95 LGLGVFLDVVYNHFGPSGNYLSSY----A--PSYFTD----RFS-----------SAWGMGLDYAEPHMRRYVTGNARMW 153 (420)
T ss_dssp TTCEEEEEECCSCCCSSSCCHHHH----C--GGGEEE----EEE-----------CSSSEEECTTSHHHHHHHHHHHHHH
T ss_pred ccccccccccccccCCCCcccccc----c--cccccc----ccc-----------ccccccccccChHHHHHHHHHhhee
Confidence 999999999999999998764211 0 000000 000 1235899999999999999999999
Q ss_pred HhhcCCCeEeecccCCCcH----HHHHHHHHhhC---C-CeEEEcccCCCCC--C-CCCCCCccchhhHhHhhhhccC-C
Q 015125 182 RNTVGFQDFRFDFARGYSA----KYVKEYIEGAR---P-IFSVGEYWDSCNY--N-SHGLDYNQDSHRQRIINWIDGT-G 249 (413)
Q Consensus 182 ~~~~gvDGfR~D~a~~i~~----~~~~~~~~~~~---~-~~~vgE~~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~~-~ 249 (413)
++++||||||+|+|++++. .+++++.++++ + .+++||.|...+. . ........+.....+..+.... .
T Consensus 154 l~~~GVDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (420)
T d2bhua3 154 LRDYHFDGLRLDATPYMTDDSETHILTELAQEIHELGGTHLLLAEDHRNLPDLVTVNHLDGIWTDDFHHETRVTLTGEQE 233 (420)
T ss_dssp HHHHCCSEEEETTGGGCCCCSSSCHHHHHHHHHHTTCSCCEEEEECSSCCTHHHHTTCCSEEECTHHHHHHHHHHHCCCS
T ss_pred eecccccEEEEeeeeeeccccccccHHHHHHHHHhhcCCceeeecccCCchhhhcccccccccccccchhhhhccccccc
Confidence 9999999999999999864 47777776654 4 6789999976321 0 0000000000111121221111 1
Q ss_pred CcccccCccchHHHHHHhc-cch-----hhh-hhhcCCCCCcccccCCcceecccCCCCC-------cCCCCCCCChhHH
Q 015125 250 QLSAAFDFTTKGILQEAVK-GQF-----WRL-RDAQGKPPGVMGWWPSRAVTFLDNHDTG-------STQAHWPFPSNHI 315 (413)
Q Consensus 250 ~~~~~~df~~~~~l~~~~~-g~~-----~~~-~~~~~~~~~~~~~~p~~~v~flenHD~~-------R~~~~~~~~~~~~ 315 (413)
.....+. .....+...+. +.. ... ..................++|++|||+. |..........++
T Consensus 234 ~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~nHD~~~~~~~~~r~~~~~~~~~~~~ 312 (420)
T d2bhua3 234 GYYAGYR-GGAEALAYTIRRGWRYEGQFWAVKGEEHERGHPSDALEAPNFVYCIQNHDQIGNRPLGERLHQSDGVTLHEY 312 (420)
T ss_dssp GGGGGCC-CSHHHHHHHHHHSSSCEEEEECCTTCCEEEECCCTTCCGGGEEEESCCHHHHHTSTTCCCGGGSTTCCHHHH
T ss_pred ccccccc-hhhHHHHHHHhhccccccchhhhhchhhhhcccccccchhheeeeecccccccccccccccccchhhhHHHH
Confidence 1111111 11222222221 100 000 0000000000001122568999999972 2222223356789
Q ss_pred HHHHHHHhcCCCeeEEecCcccCC-----------------------------------------------------c--
Q 015125 316 MEGYAYILMHPGIPSVFYDHFYDW-----------------------------------------------------G-- 340 (413)
Q Consensus 316 ~la~a~ll~~pGiP~Iy~G~E~gw-----------------------------------------------------~-- 340 (413)
++|++++||+||+|+||||+|+|. .
T Consensus 313 k~a~~~llt~pG~P~iy~GdEig~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 392 (420)
T d2bhua3 313 RGAAALLLTLPMTPLLFQGQEWAASTPFQFFSDHAGELGQAVSEGRKKEFGGFSGFSGEDVPDPQAEQTFLNSKLNWAER 392 (420)
T ss_dssp HHHHHHHHHSSSEEEEETTGGGTCSSCCCCCCCCCHHHHHHHHHHHHHHC---------CCCCTTSHHHHHTTSCCSGGG
T ss_pred HHHHHHHHhCCCCCEEeCChhhCCCCCccccccccchhhccccccccccccCCCccccccCCCcccccccccccCCHHHh
Confidence 999999999999999999999751 0
Q ss_pred -----hhHHHHHHHHHHHHHhCcccCC
Q 015125 341 -----DSIHNQIVKLMDVRRQQDIHSR 362 (413)
Q Consensus 341 -----~~l~~~i~~L~~lR~~~p~l~~ 362 (413)
+++++++|+|++|||++|+|+.
T Consensus 393 ~~~~~~~~~~~yr~Li~lRk~~p~l~~ 419 (420)
T d2bhua3 393 EGGEHARTLRLYRDLLRLRREDPVLHN 419 (420)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHCTTTTC
T ss_pred cccCcHHHHHHHHHHHHHHhcCHHHhC
Confidence 2589999999999999999975
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Probab=100.00 E-value=1.5e-54 Score=429.32 Aligned_cols=313 Identities=17% Similarity=0.171 Sum_probs=213.0
Q ss_pred ceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015125 25 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~ 102 (413)
..||||++.++|+++|||+||+++|||||+||||+|||+||++++ ++|||+|.||++|+|+|||.+|||+||++||++
T Consensus 11 ~~viYe~~v~~f~~~Gd~~gi~~~ldyi~~LGv~~i~l~Pv~~~~~~~~~GY~~~d~~~vd~~~Gt~~dlk~lv~~~h~~ 90 (400)
T d1eh9a3 11 DLIIYEIHVGTFTPEGTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKK 90 (400)
T ss_dssp SCCEEEECTTTSSSSCSHHHHHHTHHHHHHHTCCEEEECCCBCCSSSCCCSTTCCCTTCBCSTTCCHHHHHHHHHHHHHT
T ss_pred CeEEEEEehhhhCCCCCHHHHHHHhHHHHHcCCCEEEeCCcCcCCCCCCCCCCCCCCCCcCcccCCHHHHHHHHHHHHhc
Confidence 379999999999999999999999999999999999999999876 479999999999999999999999999999999
Q ss_pred CCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHH
Q 015125 103 KVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLR 182 (413)
Q Consensus 103 Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~ 182 (413)
||+||+|+|+||++.++++.......+.. ..++ +. ......++++||+|+++|++++++|+
T Consensus 91 gi~VilD~V~NH~s~~~~~~~~~~~~~~~--~~~~---------~~--------~~~~~~~~~~np~v~~~l~d~~~~Wl 151 (400)
T d1eh9a3 91 GLGVILDVVYNHVGPEGNYMVKLGPYFSQ--KYKT---------PW--------GLTFNFDDAESDEVRKFILENVEYWI 151 (400)
T ss_dssp TCEEEEEECCSCCCSSSCCHHHHSCCSCS--SCCC---------SS--------SCCCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred CCceeeecccccccCCCcchhhhcccccc--cccc---------cc--------ccccccccccccHHHHHHHHHHHHHH
Confidence 99999999999999998865432111110 0000 00 11233467789999999999999999
Q ss_pred hhcCCCeEeecccCCC----cHHHHHHHHHhhCC--CeEEEcccCCCCCCCCC---CCCcc-----chhhHhHhhhhccC
Q 015125 183 NTVGFQDFRFDFARGY----SAKYVKEYIEGARP--IFSVGEYWDSCNYNSHG---LDYNQ-----DSHRQRIINWIDGT 248 (413)
Q Consensus 183 ~~~gvDGfR~D~a~~i----~~~~~~~~~~~~~~--~~~vgE~~~~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~ 248 (413)
+++||||||+|+|+++ +.++++++.+.++. .++++|.+...+..... ..+.. ......+..++...
T Consensus 152 ~~~gvDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (400)
T d1eh9a3 152 KEYNVDGFRLDAVHAIIDTSPKHILEEIADVVHKYNRIVIAESDLNDPRVVNPKEKCGYNIDAQWVDDFHHSIHAYLTGE 231 (400)
T ss_dssp HHSCCCCEEETTGGGCCCCSSSCHHHHHHHHHHHTTCCEEECCCSCCTTTTSCGGGTCCCCSEEECHHHHHHHHHHHSCC
T ss_pred hhcccceEEeechhhhcchhhhhhHHHHHHHHhhhhhhhhhhccccCccccchhhhccceeccccccccchhhHhhhccc
Confidence 9999999999999998 45577777666542 45566755443221000 00000 00112222222211
Q ss_pred CCcccccCccchHHHHHHhc-c-----chhhhhh-hcCCCCCcccccCCcceecccCCCCCcCCCCC-----CCChhHHH
Q 015125 249 GQLSAAFDFTTKGILQEAVK-G-----QFWRLRD-AQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHW-----PFPSNHIM 316 (413)
Q Consensus 249 ~~~~~~~df~~~~~l~~~~~-g-----~~~~~~~-~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~-----~~~~~~~~ 316 (413)
. .....++.....+...+. . ....+.. ..+. ......+.+.++|++|||+.+..... ..++.+++
T Consensus 232 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~ 308 (400)
T d1eh9a3 232 R-QGYYTDFGNLDDIVKSYKDVFVYDGKYSNFRRKTHGE--PVGELDGCNFVVYIQNHDQVGNRGKGERIIKLVDRESYK 308 (400)
T ss_dssp C-SGGGGGCCSHHHHHHHHHSSCSCSSEEETTTTEEECC--CCCSCCGGGEECCSCCHHHHHTTTTCCCGGGGSCHHHHH
T ss_pred c-cchhhhhhhhHHHHHHhhhhhccchhHHHHHHHhccc--chhhhcccchhhhhhhccccccccchhhhHHHhhhhHHH
Confidence 1 112222222222222210 0 0000100 0000 00111233678999999986533211 11456789
Q ss_pred HHHHHHhcCCCeeEEecCcccCC------------------------------------------------chhHHHHHH
Q 015125 317 EGYAYILMHPGIPSVFYDHFYDW------------------------------------------------GDSIHNQIV 348 (413)
Q Consensus 317 la~a~ll~~pGiP~Iy~G~E~gw------------------------------------------------~~~l~~~i~ 348 (413)
+|++++||+||+||||||||+|. ++++++++|
T Consensus 309 ~a~a~~l~~pGiP~iy~G~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (400)
T d1eh9a3 309 IAAALYLLSPYIPMIFMGEEYGEENPFYFFSDFSDSKLIQGVREGRKKENGQDTDPQDESTFNASKLSWKIDEEIFSFYK 388 (400)
T ss_dssp HHHHHHHSSSSCCEEESSGGGTCCCCCCCCCCCCSTTHHHHHHHHHHHHTCCCSCTTSHHHHHTTSCCCCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEECChhhCCCCCCCchhhcccHHHhhhhHhhhcCccCCCCCcccccccccccCCccCCHHHHHHHH
Confidence 99999999999999999999862 136899999
Q ss_pred HHHHHHHhCcc
Q 015125 349 KLMDVRRQQDI 359 (413)
Q Consensus 349 ~L~~lR~~~p~ 359 (413)
+|++|||++|+
T Consensus 389 ~Li~lRk~~pv 399 (400)
T d1eh9a3 389 ILIKMRKELSI 399 (400)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHhHCcC
Confidence 99999999986
|
| >d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]
Probab=100.00 E-value=1.1e-55 Score=442.30 Aligned_cols=301 Identities=18% Similarity=0.244 Sum_probs=211.5
Q ss_pred ccHHHHHhhhhhHHH-cCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcC----CEEEEEEcccc
Q 015125 40 DWWRNLERKVPDISK-SGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK----VRAMADIVINH 114 (413)
Q Consensus 40 g~~~gi~~~L~yLk~-lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~G----i~VilD~V~NH 114 (413)
|||+||++||||||+ ||||+|||+||++++++|||+|.||++|||+|||+++|++||++||++| |+||||+|+||
T Consensus 66 Gdl~Gi~~kLdYl~~~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~lv~~~H~~g~~~~I~VilD~V~NH 145 (432)
T d1ji1a3 66 GDLAGIDQKLGYIKKTLGANILYLNPIFKAPTNHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILDGVFNH 145 (432)
T ss_dssp CCHHHHHHTHHHHHTTTCCCEEEESCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHCSSSSSCCEEEEEECCSB
T ss_pred cCHHHHHHHhhHHHhhcCCCEEEeCCCCcCCCCCCcccccccccCcccCCHHHHHHHHHHHHHhhhhcceeEeccccccc
Confidence 899999999999986 9999999999999999999999999999999999999999999999987 78999999999
Q ss_pred CcCCCCCCCCcccccCC-----CCCCCCC-CCeeccCCCCCCCcCCCCCCCCCcCCCCC--HHHHHHHHH----HHHHH-
Q 015125 115 RVGTTQGHGGKYNRYDG-----IPLSWDE-HAVTSCTGGLGNGSTGDNFHGVPNIDHTQ--HFVRKDIIA----WLRWL- 181 (413)
Q Consensus 115 ~~~~~~~~~~~y~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~dln~~~--~~vr~~l~~----~~~~w- 181 (413)
+|.+|+++......... ....|.. .......+.+ .....+..+|++|+.| +.||+++++ ++++|
T Consensus 146 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ln~~n~~~~v~~~~~~~~~~~~~~wl 222 (432)
T d1ji1a3 146 TGDSHPWFDKYNNFSSQGAYESQSSPWYNYYTFYTWPDSY---ASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYL 222 (432)
T ss_dssp CCTTSTTTCTTCCSSSCCTTTCTTCTTGGGBCEEETTTEE---CEETTEEEEEBBBCCSTTCHHHHHHTTSTTSHHHHHH
T ss_pred cCCCchhHhhccCccccccccccccccccccccccccccc---ccccccCccCccccCCCcHHHHHHHHHHHHHHHHHhh
Confidence 99999876532111100 0000110 0111111100 1112345689999988 557766665 55555
Q ss_pred HhhcCCCeEeecccCCCcH-----------HHHHHHHHhhC---C-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhc
Q 015125 182 RNTVGFQDFRFDFARGYSA-----------KYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWID 246 (413)
Q Consensus 182 ~~~~gvDGfR~D~a~~i~~-----------~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (413)
.+++||||||+|++++++. ++|+++.+.++ + .+++||.|.... .++.
T Consensus 223 ~~~~gvDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igE~~~~~~------------------~~~~ 284 (432)
T d1ji1a3 223 NPPYSVDGWRLDAAQYVDANGNNGSDVTNHQIWSEFRNAVKGVNSNAAIIGEYWGNAN------------------PWTA 284 (432)
T ss_dssp STTTCCCEEEETTGGGCBSTTCCCSSHHHHHHHHHHHHHHHHHCTTCEEEECCSSCCG------------------GGTT
T ss_pred hhhcCccceeeeceeeeccCCCCcccccchhHHHHHHHHHHhhCCCeEEEeeeccCcc------------------ceec
Confidence 4579999999999999863 58888877654 4 778999886521 1111
Q ss_pred cCCCcccccCccch-HHHHHHhccch----------h---hhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCCh
Q 015125 247 GTGQLSAAFDFTTK-GILQEAVKGQF----------W---RLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPS 312 (413)
Q Consensus 247 ~~~~~~~~~df~~~-~~l~~~~~g~~----------~---~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~ 312 (413)
......+..++... ..+...+.+.. . ........ ......+..+++|++|||++|+.+.++.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~f~~nHD~~R~~s~~~~~~ 362 (432)
T d1ji1a3 285 QGNQWDAATNFDGFTQPVSEWITGKDYQNNSASISTTQFDSWLRGTRA--NYPTNVQQSMMNFLSNHDITRFATRSGGDL 362 (432)
T ss_dssp TSSSCSEEBCTTTTHHHHHHHHTSBCTTSCBCCCCHHHHHHHHHHHHT--TSCHHHHTTCEEESCCTTSCCHHHHTTTCH
T ss_pred cccccchhhhhhhhhHHHHHHhhcchhhcccccccHHHHHHHHHHhHh--hcccccccccccccccCCccchhhhcCCHH
Confidence 11122334443322 22222221110 0 01111000 001112335789999999999998887777
Q ss_pred hHHHHHHHHHhcCCCeeEEecCcccC--------------Cc-----hhHHHHHHHHHHHHHhCcccCCC
Q 015125 313 NHIMEGYAYILMHPGIPSVFYDHFYD--------------WG-----DSIHNQIVKLMDVRRQQDIHSRS 363 (413)
Q Consensus 313 ~~~~la~a~ll~~pGiP~Iy~G~E~g--------------w~-----~~l~~~i~~L~~lR~~~p~l~~G 363 (413)
.++++|++++||+||+||||||+|+| |+ +++++++|+|++||+++|+|+.|
T Consensus 363 ~~~~~a~~~llt~pG~P~iyyGdE~G~~g~~d~~~R~~~~W~~~~~~~~l~~~~~~L~~lR~~~paL~~G 432 (432)
T d1ji1a3 363 WKTYLALIFQMTYVGTPTIYYGDEYGMQGGADPDNRRSFDWSQATPSNSAVALTQKLITIRNQYPALRTG 432 (432)
T ss_dssp HHHHHHHHHHTTSSSEEEEETTGGGTCCCCSTTGGGCCCCTTSSSTTSHHHHHHHHHHHHHHHCHHHHHS
T ss_pred HHHHHHHHHHHHcCCCcEEEcCHhhCCCCCCCcccccCCCCCcCCCchHHHHHHHHHHHHHhcCHHhhCC
Confidence 88999999999999999999999986 32 47999999999999999999876
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Probab=100.00 E-value=2.7e-54 Score=437.28 Aligned_cols=297 Identities=20% Similarity=0.247 Sum_probs=201.5
Q ss_pred eeEEEeeecCCCCC-----ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCKH-----DWWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-----g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.||||+|..+|++. |||+||++||||||+||||+||||||++++ ++|||+|.|||+|+|+|||+++||+||++|
T Consensus 9 ~viYei~~~~F~d~~~~~~Gd~~Gi~~kLdyLk~LGv~~I~L~Pi~~~~~~~~GY~~~d~~~vd~~~Gt~~df~~Lv~~a 88 (478)
T d1m53a2 9 AVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEM 88 (478)
T ss_dssp CCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHH
T ss_pred CeEEEEecchhcCCCCCCccCHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCCcCccCCCCcCcccCCHHHHHHHHHHH
Confidence 69999999998865 799999999999999999999999999985 689999999999999999999999999999
Q ss_pred HHcCCEEEEEEccccCcCCCCCCC-------Ccc---cccCCCCCC--------CCCCCeeccCCCCCCCcCCCCCCCCC
Q 015125 100 KQHKVRAMADIVINHRVGTTQGHG-------GKY---NRYDGIPLS--------WDEHAVTSCTGGLGNGSTGDNFHGVP 161 (413)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~~-------~~y---~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (413)
|++||+||||+|+||++.+|+++. ..| ..+.+.... +............+..........+|
T Consensus 89 H~~Gi~VilD~V~NH~~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (478)
T d1m53a2 89 KKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQYYLHYFARQQP 168 (478)
T ss_dssp HHTTCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSSCSSCCBCTTSSBSEEECTTTCCEEECSSCTTCC
T ss_pred HHCCCEEEeccccccccccCchhhhcccCCCCCccccccccCCCcCCCCccccccCCCCccccccccCcccccCcCCCCC
Confidence 999999999999999999886432 111 111110000 00000011111111222233457899
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc--------------------------HHHHHHHHHhhC---C
Q 015125 162 NIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS--------------------------AKYVKEYIEGAR---P 212 (413)
Q Consensus 162 dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~--------------------------~~~~~~~~~~~~---~ 212 (413)
++|+++|+|+++|++++++|+ ++||||||+|+++++. ..+++++...+. +
T Consensus 169 dln~~~~~V~~~i~~~~~~w~-e~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (478)
T d1m53a2 169 DLNWDNPKVREDLYAMLRFWL-DKGVSGMRFDTVATYSKIPGFPNLTPEQQKNFAEQYTMGPNIHRYIQEMNRKVLSRYD 247 (478)
T ss_dssp BBCTTSHHHHHHHHHHHHHHH-TTTCCEEEETTGGGSSCCTTCCCCCHHHHHTHHHHTTCCTTHHHHHHHHHHHTGGGSC
T ss_pred cccchhHHHHHHHHHHHHHHH-hcCCceeccccceeecccccccccchhhhhccchhhccchhHHHHHHHHHHHHhhccc
Confidence 999999999999999999998 8999999999998774 235555555443 3
Q ss_pred CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhcc-CCCcccccCccchHHHHHHh---c-c--chhhhhhhcCCCCCcc
Q 015125 213 IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQEAV---K-G--QFWRLRDAQGKPPGVM 285 (413)
Q Consensus 213 ~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~df~~~~~l~~~~---~-g--~~~~~~~~~~~~~~~~ 285 (413)
.+++||.|.... .....|.+. ...+...|+|.+........ . . ....+...........
T Consensus 248 ~~~~~e~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (478)
T d1m53a2 248 VATAGEIFGVPL--------------DRSSQFFDRRRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFRQIISKMDVTV 313 (478)
T ss_dssp CEEEEECTTCCG--------------GGTHHHHCGGGCSCSEEECCTTTTTTBCSSCTTCBCCCCHHHHHHHHHHHHHHH
T ss_pred cceeeeecCCCH--------------HHHHhhhcccCCccccccchhhhhhhhhhhhhhccccccHHHHHHHHHHHHhhh
Confidence 678999886521 222333322 12234455554322111110 0 0 0111111000000000
Q ss_pred cccCCcceecccCCCCCcCCCCCCCC-----hhHHHHHHHHHhcCCCeeEEecCcccC
Q 015125 286 GWWPSRAVTFLDNHDTGSTQAHWPFP-----SNHIMEGYAYILMHPGIPSVFYDHFYD 338 (413)
Q Consensus 286 ~~~p~~~v~flenHD~~R~~~~~~~~-----~~~~~la~a~ll~~pGiP~Iy~G~E~g 338 (413)
......+.|++|||++|+.+.++.. ..+.+++++++||+||+||||||+|+|
T Consensus 314 -~~~~~~~~~~~nhd~~R~~~~~~~~~~~~~~~~~~~~~~lllt~pGiP~iyyGdEiG 370 (478)
T d1m53a2 314 -GKYGWNTFFLDNHDNPRAVSHFGDDRPQWREASAKALATITLTQRATPFIYQGSELG 370 (478)
T ss_dssp -TTTCCBEECSCCTTSCCHHHHHSCCSTTTHHHHHHHHHHHHTSSSSEEEEETTTTTT
T ss_pred -cccccceeeccCCCCcccccccCCchHHHHHHHHHHHHHHHHhCCCCCEEecccccC
Confidence 0122456899999999977654432 345788899999999999999999986
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=3.7e-54 Score=427.92 Aligned_cols=293 Identities=20% Similarity=0.288 Sum_probs=212.9
Q ss_pred ccccCCceeEEEeeecCCCCCccHHHHHhhh-hhHHHcCCCEEEcCCCCCCCC--------CCCCCcccCCCCCCCCCCH
Q 015125 19 AVIRNGREILFQGFNWESCKHDWWRNLERKV-PDISKSGFTSVWLPPATHSFA--------PEGYLPQNLYSLNSSYGSE 89 (413)
Q Consensus 19 ~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L-~yLk~lGv~~I~L~Pi~~~~~--------~~gY~~~d~~~id~~~Gt~ 89 (413)
|+.+.|++||||+|+|+ |++|++++ +||++||||+||||||.++.. +|||+|+| |+|+|+|||+
T Consensus 4 p~~~~g~~~i~~~f~w~------~~~i~~e~~~yL~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~d-Y~v~~~~Gt~ 76 (403)
T d1hx0a2 4 PQTQSGRTSIVHLFEWR------WVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVS-YKLCTRSGNE 76 (403)
T ss_dssp CCCCTTCCEEEEETTCC------HHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSC-SCSCBTTBCH
T ss_pred CCCCCCCeeEEEeecCc------HHHHHHHHHHHHHHhCCCEEEeCcCccCccCCCCCCCCceeecCCC-CccCCCCCCH
Confidence 77889999999999999 99998776 799999999999999998631 47999999 6899999999
Q ss_pred HHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCc-----ccccC-C--CCCCCCCCCee----ccCC----CCCC--C
Q 015125 90 HLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGK-----YNRYD-G--IPLSWDEHAVT----SCTG----GLGN--G 151 (413)
Q Consensus 90 ~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~-----y~~~~-~--~~~~~~~~~~~----~~~~----~~~~--~ 151 (413)
+|||+||++||++||+||||+|+||++.++++.... +.... . ....+...... .... .+.. .
T Consensus 77 ~dfk~Lv~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (403)
T d1hx0a2 77 NEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQ 156 (403)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSEEEETTCCCBSCBSSCCCBBGGGTBBTTTTBCGGGBCTTTCCSTTSBCCCTTCHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEEecccccccccccccccccCcccccccccCCCCCCCCccCCCCcccCCCCCccccCCccc
Confidence 999999999999999999999999999988754321 10000 0 00000000000 0000 0000 0
Q ss_pred cCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC-----------CCeEEEccc
Q 015125 152 STGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR-----------PIFSVGEYW 220 (413)
Q Consensus 152 ~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~-----------~~~~vgE~~ 220 (413)
...+.+..+||||++||+||+++++++++|+ ++||||||+|++++++.++++++.+.++ ..++++|++
T Consensus 157 ~~~~~l~~~pDLn~~np~Vr~~~~~~l~~~~-~~GvdGfR~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 235 (403)
T d1hx0a2 157 VRDCQLVGLLDLALEKDYVRSMIADYLNKLI-DIGVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEVI 235 (403)
T ss_dssp HHHSBGGGEEEBCTTSHHHHHHHHHHHHHHH-HHTCCEEEETTGGGSCHHHHHHHHTTCCCCCTTTSCTTCCCEEEECCC
T ss_pred eeeccccccCcccCCCHHHHHHHHHHHHHHH-HcCCCccccccccccCHHHHHHHHHHHHhhCcccccccCCceEEEEEe
Confidence 1122345689999999999999999999998 8999999999999999999999988764 157899988
Q ss_pred CCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc---hhhhhhhcCCCCCcccccCCcceeccc
Q 015125 221 DSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVMGWWPSRAVTFLD 297 (413)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~p~~~v~fle 297 (413)
..... .+..+.. .+..++++|.+...+...+.+. .......+.. ......+.++|+|++
T Consensus 236 ~~~~~--------------~~~~~~~--~~~~~~~df~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~Fl~ 297 (403)
T d1hx0a2 236 DLGGE--------------AIKSSEY--FGNGRVTEFKYGAKLGTVVRKWSGEKMSYLKNWGE--GWGFMPSDRALVFVD 297 (403)
T ss_dssp CCSSS--------------SSCGGGG--TTTSEEECHHHHHHHHHHHTTCTTCCGGGGGGTTG--GGTCCCGGGEEECSC
T ss_pred ccCcc--------------hhhcccc--cCCCccccccccchhhHHHhhccchhHHHHHHhcc--ccccCCccceEEecc
Confidence 65210 0111111 1245788999888888887432 2222222221 111223558899999
Q ss_pred CCCCCcCCCCCCC------ChhHHHHHHHHHhcCC-CeeEEecCccc
Q 015125 298 NHDTGSTQAHWPF------PSNHIMEGYAYILMHP-GIPSVFYDHFY 337 (413)
Q Consensus 298 nHD~~R~~~~~~~------~~~~~~la~a~ll~~p-GiP~Iy~G~E~ 337 (413)
|||++|+.+..+. +..++++|+++|||+| |+|+||||.|+
T Consensus 298 NHD~~R~~~~~~~~~~~~~~~~~~~~a~af~lt~p~G~P~iy~gy~~ 344 (403)
T d1hx0a2 298 NHDNQRGHGAGGSSILTFWDARLYKIAVGFMLAHPYGFTRVMSSYRW 344 (403)
T ss_dssp CTTGGGTCSSCGGGCCCGGGHHHHHHHHHHHHHSCSSEEEEEECBCC
T ss_pred cCCCcccccCCCccccccccHHHHHHHHHHHHHCCCCccceEeeecc
Confidence 9999998776432 3367899999999999 99999888875
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Probab=100.00 E-value=6.6e-54 Score=419.58 Aligned_cols=316 Identities=21% Similarity=0.450 Sum_probs=227.8
Q ss_pred ceeEEEeeecCCCCC-ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC--CCCCCcccCC---------CCCCCCCCHHHH
Q 015125 25 REILFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSFA--PEGYLPQNLY---------SLNSSYGSEHLL 92 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~-g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~--~~gY~~~d~~---------~id~~~Gt~~~~ 92 (413)
++||||+|+|.+.++ |+|++|++||||||+||||+|||+||+++++ ++||++.||| +|+|+||+++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~i~~kLdyLk~LGvt~I~l~Pi~~~~~~~~~gY~~~d~~~~~~~~~~~~vd~~~Gt~~ef 83 (390)
T d1ud2a2 4 NGTMMQYYEWHLENDGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQL 83 (390)
T ss_dssp CCCEEECCCTTCCCSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHH
T ss_pred CCeEEEeeccCCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCccCCcccccccccCCcCCCCCCHHHH
Confidence 479999999998888 5999999999999999999999999998754 8999999996 799999999999
Q ss_pred HHHHHHHHHcCCEEEEEEccccCcCCCCCCC---------CcccccCC--------------CCCCCCCCC---------
Q 015125 93 KALLHKMKQHKVRAMADIVINHRVGTTQGHG---------GKYNRYDG--------------IPLSWDEHA--------- 140 (413)
Q Consensus 93 ~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~---------~~y~~~~~--------------~~~~~~~~~--------- 140 (413)
|+||++||++||+||||+|+||++..+++.. ..|..+.+ ....+.+..
T Consensus 84 k~lV~~~H~~GI~VilDvV~NHt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (390)
T d1ud2a2 84 ERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGV 163 (390)
T ss_dssp HHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCGGGTTSSCCCCBCGGGEEEE
T ss_pred HHHHHHHHhcCCceEEEEccccccCcccchhhhhcccCcccccccccccccccccccccCCccCCcCCCCcccccccCCC
Confidence 9999999999999999999999999875421 11111000 000000000
Q ss_pred ----------eeccCC-CCC----CCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHH
Q 015125 141 ----------VTSCTG-GLG----NGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKE 205 (413)
Q Consensus 141 ----------~~~~~~-~~~----~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~ 205 (413)
...... .+. ..........+++++..++.+++++.+++..|+..+|+||||+|+++++..+++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~dg~r~D~~~~~~~~~~~~ 243 (390)
T d1ud2a2 164 DWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWYTSD 243 (390)
T ss_dssp EEETTTTEEEEEEETTCCCCSSCCCTTSCCCCCSSEEECTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHHHHH
T ss_pred CccccCCCCceeeccCCccccccccccccccccccccccccCHHHHHHHHHhhhhccceeccccccccchhhcChHHHHH
Confidence 000000 000 01112223567899999999999999999999999999999999999999999988
Q ss_pred HHHhhC----C-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHh-ccchhhhhhhcC
Q 015125 206 YIEGAR----P-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFWRLRDAQG 279 (413)
Q Consensus 206 ~~~~~~----~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~-~g~~~~~~~~~~ 279 (413)
+....+ + .+.++|.|... ......+..........+++.+...+..+. ......+...+.
T Consensus 244 ~~~~~~~~~~~~~~~~~e~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (390)
T d1ud2a2 244 WVRHQRNEADQDLFVVGEYWKDD--------------VGALEFYLDEMNWEMSLFDVPLNYNFYRASQQGGSYDMRNILR 309 (390)
T ss_dssp HHHHHHHHCSSCCEEEECCCCSC--------------HHHHHHHHHHTTTCSEEECHHHHHHHHHHHHHCTTSCGGGTTT
T ss_pred HHHHHhhhhhhheeeeccccCCc--------------cccccccccccccccchhhHHHHHHHHHHhcccchHHHHHHHh
Confidence 876532 3 56789988652 122333333333445667777776666665 233333443332
Q ss_pred CCCCcccccCCcceecccCCCCCcCCCCCCC--ChhHHHHHHHHHhcCCCeeEEecCcccCCc----hhHHHHHHHHHHH
Q 015125 280 KPPGVMGWWPSRAVTFLDNHDTGSTQAHWPF--PSNHIMEGYAYILMHPGIPSVFYDHFYDWG----DSIHNQIVKLMDV 353 (413)
Q Consensus 280 ~~~~~~~~~p~~~v~flenHD~~R~~~~~~~--~~~~~~la~a~ll~~pGiP~Iy~G~E~gw~----~~l~~~i~~L~~l 353 (413)
. ......|.++++|++|||++|+.+.... +..+.++++++++|+||+||||||||+|.. ....+.|++|+++
T Consensus 310 ~--~~~~~~~~~~v~fl~nHD~~r~~~~~~~~~~~~~~~~~~~il~~~pG~P~iy~GdE~G~~~~~~~~~~d~i~~l~~~ 387 (390)
T d1ud2a2 310 G--SLVEAHPMHAVTFVDNHDTQPGESLESWVADWFKPLAYATILTREGGYPNVFYGDYYGIPNDNISAKKDMIDELLDA 387 (390)
T ss_dssp T--CHHHHCGGGEEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHHHHHHHHH
T ss_pred h--ccccCCccceEEEccCCccccccccccCcCHHHHHHHHHHHHHhCCCCeEEEchhhcCCCCCCCccchHHHHHHHHH
Confidence 1 1122345688999999999999887543 334455566666788999999999999854 3467889999999
Q ss_pred HHh
Q 015125 354 RRQ 356 (413)
Q Consensus 354 R~~ 356 (413)
||.
T Consensus 388 R~~ 390 (390)
T d1ud2a2 388 RQN 390 (390)
T ss_dssp HHH
T ss_pred cCC
Confidence 984
|
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=1.6e-53 Score=431.72 Aligned_cols=297 Identities=18% Similarity=0.233 Sum_probs=200.6
Q ss_pred eeEEEeeecCCCCC-----ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCKH-----DWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-----g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.||||+|...|++. |||+||++||||||+||||+||||||+++++ +|||++.||++|+|+|||.++||+||++|
T Consensus 9 ~viYei~~~~F~d~~~~~~Gd~~gi~~kLdYLk~LGv~~I~l~Pi~~~~~~~~GY~~~d~~~vd~~~Gt~~df~~Lv~~a 88 (479)
T d1uoka2 9 SVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEM 88 (479)
T ss_dssp CCEEEECGGGTCCSSSSSSCCHHHHHTTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHH
T ss_pred CeEEEEEcchhcCCCCCCCcCHHHHHHhhHHHHHcCCCEEEECCCcCCCCCCCCcCccccCCcCcccCCHHHHHHHHHHH
Confidence 69999999999876 8999999999999999999999999999864 89999999999999999999999999999
Q ss_pred HHcCCEEEEEEccccCcCCCCCCC-------Ccc---cccCCC-----CCCCCCC---CeeccCCCCCCCcCCCCCCCCC
Q 015125 100 KQHKVRAMADIVINHRVGTTQGHG-------GKY---NRYDGI-----PLSWDEH---AVTSCTGGLGNGSTGDNFHGVP 161 (413)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~~-------~~y---~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 161 (413)
|++||+||||+|+||++.+++++. ..+ ..+.+. +..|... .........+..........+|
T Consensus 89 H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (479)
T d1uoka2 89 HERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSGSAWQYDEMTDEYYLHLFSKKQP 168 (479)
T ss_dssp HHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCSSSSCSSCBBCTTSSBSEEEETTTTEEEECSSCTTSC
T ss_pred HHCCCEEEecccccccccccchhhhhhhccCCccccceeccccccCcCcCCccccCCCCccccccccCcceecccCCCcc
Confidence 999999999999999999886431 111 111110 0011100 0000001111111223357899
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc----------------------------HHHHHHHHHhhC--
Q 015125 162 NIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS----------------------------AKYVKEYIEGAR-- 211 (413)
Q Consensus 162 dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~----------------------------~~~~~~~~~~~~-- 211 (413)
++|+++|+||++|++++++|+ ++||||||+|+++++. ..+++++.+.+.
T Consensus 169 dln~~~~~v~~~i~~~~~~W~-e~gvDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (479)
T d1uoka2 169 DLNWDNEKVRQDVYEMMKFWL-EKGIDGFRMDVINFISKEEGLPTVETEEEGYVSGHKHFMNGPNIHKYLHEMNEEVLSH 247 (479)
T ss_dssp BBCTTSHHHHHHHHHHHHHHH-HTTCCEEEETTGGGSCCCTTCCCCCCCCSSCBCCGGGTTTCTTHHHHHHHHHHHTGGG
T ss_pred ccccCCHHHHHHHHHHHHHHH-HcCCCCcccccceeeeccccCcccccccccccccchhhccChhHHHHHHHHHHHHHhc
Confidence 999999999999999999998 7999999999998874 235666666554
Q ss_pred -CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhcc-CCCcccccCccchHHHHHHhc------cchhhhhhhcCCCCC
Q 015125 212 -PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQEAVK------GQFWRLRDAQGKPPG 283 (413)
Q Consensus 212 -~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~df~~~~~l~~~~~------g~~~~~~~~~~~~~~ 283 (413)
+.++++|.+... ...+..|... ...+...|+|........... .....+.........
T Consensus 248 ~~~~~~~e~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (479)
T d1uoka2 248 YDIMTVGEMPGVT--------------TEEAKLYTGEERKELQMVFQFEHMDLDSGEGGKWDVKPCSLLTLKENLTKWQK 313 (479)
T ss_dssp SCCEEEEECTTCC--------------HHHHHHHHCGGGCSCSCEECCGGGSTTEETTEEEEECCCCHHHHHHHHHHHHH
T ss_pred CccceeecccCCc--------------hHhhhhhccCCCcccccccCcccchhhhhccCcccccchhhhHHhhhHHHHhh
Confidence 356788976541 2334444432 122334444432211000000 000011100000000
Q ss_pred cccccCCcceecccCCCCCcCCCCCCC----ChhHHHHHHHHHhcCCCeeEEecCcccC
Q 015125 284 VMGWWPSRAVTFLDNHDTGSTQAHWPF----PSNHIMEGYAYILMHPGIPSVFYDHFYD 338 (413)
Q Consensus 284 ~~~~~p~~~v~flenHD~~R~~~~~~~----~~~~~~la~a~ll~~pGiP~Iy~G~E~g 338 (413)
..........|++|||++|+.+.++. ...+.+++++++||+||+||||||+|+|
T Consensus 314 -~~~~~~~~~~~~~nhd~~~~~~~~~~~~~~~~~~~~~~~~~l~t~pGiP~IyyGdEiG 371 (479)
T d1uoka2 314 -ALEHTGWNSLYWNNHDQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYIYQGEEIG 371 (479)
T ss_dssp -HTSSSSCCEECSCCTTSCCHHHHTSCSSTTHHHHHHHHHHHHHTSSSEEEEETTGGGT
T ss_pred -hcccccccceecccccccccccccCccHHHHHHHHHHHHHHHHhCCCCcccccccccC
Confidence 00112245689999999987665432 2357889999999999999999999986
|
| >d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Probab=100.00 E-value=2.3e-52 Score=430.70 Aligned_cols=319 Identities=13% Similarity=0.151 Sum_probs=228.9
Q ss_pred cCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC---CCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 015125 22 RNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF---APEGYLPQNLYSLNSSYGSEHLLKALLHK 98 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~---~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~ 98 (413)
+..+.++|+++..-+. |||+||++||||||+||||+||||||++++ ++|||+|.||++|||+|||.+||++||++
T Consensus 94 ~~~~~~~~~~y~~~fg--GDl~Gi~~kLdYLk~LGVt~I~L~Pi~~~p~~~sd~GY~v~dy~~Vdp~lGt~edl~~Lv~~ 171 (554)
T d1g5aa2 94 LSNKQVGGVCYVDLFA--GDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAA 171 (554)
T ss_dssp GCTTCCEEEECHHHHH--SSHHHHHTTHHHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBCTTTCCHHHHHHHHHH
T ss_pred cCcCceeEEEeccccC--cCHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCCCCcCcccCCCCCcccCCHHHHHHHHHH
Confidence 3445788998875332 789999999999999999999999999985 57999999999999999999999999999
Q ss_pred HHHcCCEEEEEEccccCcCCCCCCC------Ccc----cccCCC-------------CCCCCCCCeeccCCCCCCCcCCC
Q 015125 99 MKQHKVRAMADIVINHRVGTTQGHG------GKY----NRYDGI-------------PLSWDEHAVTSCTGGLGNGSTGD 155 (413)
Q Consensus 99 ~h~~Gi~VilD~V~NH~~~~~~~~~------~~y----~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
||++||+||+|+|+||||.+|+|+. +.| ..+.+. .....+.......+ +......
T Consensus 172 aH~rGI~VilD~V~NHts~~h~w~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 249 (554)
T d1g5aa2 172 LHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGGFSQLED--GRWVWTT 249 (554)
T ss_dssp HHHTTCEEEEEECCSEEETTSHHHHHHHTTCGGGTTSBCEESSSHHHHHHTTTCCCSSTTTCSTTEEECTT--SCEEECS
T ss_pred HHHCCCEEEEEECcCCCCCCccchhhhhccCCccccceEEcCCCCCCccccCCCcccCCCCCCcceeecCC--Cceeecc
Confidence 9999999999999999999997542 111 111110 00000000111111 0011112
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc-------------HHHHHHHHHhh---CC-CeEEEc
Q 015125 156 NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-------------AKYVKEYIEGA---RP-IFSVGE 218 (413)
Q Consensus 156 ~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~-------------~~~~~~~~~~~---~~-~~~vgE 218 (413)
....+|+||++||+|+++|++++++|+ ++||||||+|+++++. ..+++++...+ .| .+++||
T Consensus 250 f~~~~~dln~~np~V~~~~~~~~~~w~-~~gvDGfRlDa~~~~~~~~~~~~~n~p~~~~~~~~~~~~~~~~~p~~~l~aE 328 (554)
T d1g5aa2 250 FNSFQWDLNYSNPWVFRAMAGEMLFLA-NLGVDILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMRIAAPAVFFKSE 328 (554)
T ss_dssp SSTTEEEBCTTSHHHHHHHHHHHHHHH-TTTCSEEEETTGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred cCCcccccccCCHHHHHHHHhhhhhhh-hccccccccccchhhccccccccccCchhhHHHHHHHHHHhhhCCCceeecc
Confidence 236789999999999999999999999 8999999999999884 46777776654 35 788999
Q ss_pred ccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhc-cchhhhhhhcCCCCCcccccCCcceeccc
Q 015125 219 YWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLD 297 (413)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~-g~~~~~~~~~~~~~~~~~~~p~~~v~fle 297 (413)
+|.. +.++..|+.. +.....+++.+...+..+.. ++...+.+........ ..+...++|++
T Consensus 329 ~~~~---------------~~~~~~y~g~-~~~~~~~~~~~~~~~~~a~~~~~~~~l~~~l~~~~~~--~~~~~~~nfl~ 390 (554)
T d1g5aa2 329 AIVH---------------PDQVVQYIGQ-DECQIGYNPLQMALLWNTLATREVNLLHQALTYRHNL--PEHTAWVNYVR 390 (554)
T ss_dssp CCSC---------------HHHHGGGBST-TSBSEEECHHHHHHHHHHHHHCCCHHHHHHHHHSCCC--CTTCEEEEESC
T ss_pred ccCC---------------HHHHHHHhCC-CccccccccccchhhhhhcccccHHHHHHHHHhCccc--CCCCeEEeehh
Confidence 8875 4677788754 34677888877766666652 3322222222111111 01235789999
Q ss_pred CCCCCcC-----------------------------CCCC-------------------------------CCChhHHHH
Q 015125 298 NHDTGST-----------------------------QAHW-------------------------------PFPSNHIME 317 (413)
Q Consensus 298 nHD~~R~-----------------------------~~~~-------------------------------~~~~~~~~l 317 (413)
|||.-.. .... .....++++
T Consensus 391 ~HD~ig~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~n~~~~d~~~~~~~~~~~~~~~~~~~~~~r~~l 470 (554)
T d1g5aa2 391 SHDDIGWTFADEDAAYLGISGYDHRQFLNRFFVNRFDGSFARGVPFQYNPSTGDCRVSGTAAALVGLAQDDPHAVDRIKL 470 (554)
T ss_dssp CSSCBCCCCCHHHHHHTTCCHHHHHHHHHHHHTTCSTTCCCCCEEECCCTTTCCCEEECCHHHHHTGGGTCTTHHHHHHH
T ss_pred cccccccccchhhhhhhcccchHHHHHHhhhcccccccccccCcchhccccccccccccchhhccccccchHHHHHHHHH
Confidence 9994211 0000 001236789
Q ss_pred HHHHHhcCCCeeEEecCcccCCc--------------------------------------hhHHHHHHHHHHHHHhCcc
Q 015125 318 GYAYILMHPGIPSVFYDHFYDWG--------------------------------------DSIHNQIVKLMDVRRQQDI 359 (413)
Q Consensus 318 a~a~ll~~pGiP~Iy~G~E~gw~--------------------------------------~~l~~~i~~L~~lR~~~p~ 359 (413)
+++++||+|||||||||+|+|.. .++++++|+|++||+++|+
T Consensus 471 a~alllt~pGiP~IYyGdEiG~~nd~~~~~d~~~~~~~rw~~r~~~~~~~~~~~~d~~s~~~~v~~~~r~Li~lRk~~pA 550 (554)
T d1g5aa2 471 LYSIALSTGGLPLIYLGDEVGTLNDDDWSQDSNKSDDSRWAHRPRYNEALYAQRNDPSTAAGQIYQDLRHMIAVRQSNPR 550 (554)
T ss_dssp HHHHHHHSSSEEEEETTGGGTCCCCSSGGGCTTTTTCGGGGGCCCCCHHHHTTTTCTTSHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHcCChhhheechhhCCCCChhhccCCCCCCCchhhccccCCHHHHHhhhCcccHHHHHHHHHHHHHHHHhhCHh
Confidence 99999999999999999998610 1389999999999999999
Q ss_pred cCCC
Q 015125 360 HSRS 363 (413)
Q Consensus 360 l~~G 363 (413)
|+.|
T Consensus 551 f~~G 554 (554)
T d1g5aa2 551 FDGG 554 (554)
T ss_dssp GCSS
T ss_pred hcCC
Confidence 9876
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=100.00 E-value=3.4e-53 Score=429.06 Aligned_cols=173 Identities=19% Similarity=0.250 Sum_probs=137.2
Q ss_pred eeEEEeeecCCCCC---------ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--------------CCCCCCcccCCCC
Q 015125 26 EILFQGFNWESCKH---------DWWRNLERKVPDISKSGFTSVWLPPATHSF--------------APEGYLPQNLYSL 82 (413)
Q Consensus 26 ~~i~~~f~~~~~~~---------g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--------------~~~gY~~~d~~~i 82 (413)
-||||++.++|++. |||+||++||||||+||||+||||||++++ .+|||+|.||++|
T Consensus 17 ~viYei~v~~f~~~~~~~~~~~~Gd~~Gi~~kLdyl~~LGvnaiwl~Pi~~~~~~~~~~~~~~~~~~~y~GY~~~d~~~v 96 (475)
T d1bf2a3 17 DVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSP 96 (475)
T ss_dssp CCEEEECHHHHHTTCTTSCGGGTTSHHHHHHTHHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCBSCSSCB
T ss_pred eEEEEEEhhHhccCCCCCCccccCCHHHHHhhhHHHHHcCCCEEEeCCCCcCCCcccccccccccCcCCCCCCcccCCCc
Confidence 59999999987654 799999999999999999999999999875 2589999999999
Q ss_pred CCCC-------CCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCee-ccCCCCCCCcCC
Q 015125 83 NSSY-------GSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVT-SCTGGLGNGSTG 154 (413)
Q Consensus 83 d~~~-------Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 154 (413)
||+| ||.+|||+||++||++||+||+|+|+||++.+|++.......... ..|...... .+....+.....
T Consensus 97 dp~y~~~~~~~Gt~~d~~~LV~~aH~~GIrVilD~V~NH~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 174 (475)
T d1bf2a3 97 DRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATI--YSWRGLDNATYYELTSGNQYFY 174 (475)
T ss_dssp CGGGCSCCSTTHHHHHHHHHHHHHHHTTCEEEEEECCSSCTTCSBSSSSCSSCBBC--SSHHHHHHHHHBCBCTTSSSBC
T ss_pred CcccccCCCCCCCHHHHHHHHHHHHhcCcEEEEEeccccccCCCcccccCCCcCcc--ccccCcccccccccCCCccccc
Confidence 9999 999999999999999999999999999999999876532211000 000000000 011111111223
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcH
Q 015125 155 DNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA 200 (413)
Q Consensus 155 ~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~ 200 (413)
..+..+|+||+.||+|++++++++++|++++||||||+|++++++.
T Consensus 175 ~~~~~~~dln~~np~V~~~~~~~~~~w~~~~gvDGfR~D~~~~~~~ 220 (475)
T d1bf2a3 175 DNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGN 220 (475)
T ss_dssp CSSSSSCCBCTTSHHHHHHHHHHHHHHHHTSCCCEEEETTGGGGGB
T ss_pred cCCCccCccchhhhHHHHHHHHHHHhhhhhcCCceEEEehHhhhch
Confidence 3456789999999999999999999999999999999999988863
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-51 Score=402.87 Aligned_cols=311 Identities=13% Similarity=0.071 Sum_probs=216.0
Q ss_pred eeEEEeeecCCCCC------ccHHHHHhhh-hhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHH
Q 015125 26 EILFQGFNWESCKH------DWWRNLERKV-PDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALL 96 (413)
Q Consensus 26 ~~i~~~f~~~~~~~------g~~~gi~~~L-~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv 96 (413)
-+|||++.++|..+ |+|+||++|| |||++||||+|||+||++++ ++|||+|.||++|||+|||++||++||
T Consensus 17 ~~iYe~~~~~f~~~~~~~~~g~~~gi~~klidyl~~LGv~~iwl~Pi~~~~~~~~hGY~~~d~~~vdp~~Gt~~d~~~LV 96 (396)
T d1m7xa3 17 ISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFI 96 (396)
T ss_dssp CEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEECGGGSCHHHHHHHH
T ss_pred cEEEEEccCccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcCcCcCCCcCcccCCHHHHHHHH
Confidence 37999999998655 7999999997 99999999999999999986 479999999999999999999999999
Q ss_pred HHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHH
Q 015125 97 HKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIA 176 (413)
Q Consensus 97 ~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~ 176 (413)
++||++||+||+|+|+||++.++++....-..+ ..+.. ++.. ........+.+|+.+|.++.++.+
T Consensus 97 ~~aH~~gi~VilD~V~NH~~~~~~~~~~~~~~~----~~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 162 (396)
T d1m7xa3 97 DAAHAAGLNVILDWVPGHFPTDDFALAEFDGTN----LYEHS-------DPRE---GYHQDWNTLIYNYGRREVSNFLVG 162 (396)
T ss_dssp HHHHHTTCEEEEEECTTSCCCSTTSSTTGGGSC----SSBCC---------------------CCCBCTTSHHHHHHHHH
T ss_pred HHHhhhhhhhhhcccccccCCcccccccccCCc----ccccc-------CCCC---CCCCCCCCccccCCCchhHHHHHH
Confidence 999999999999999999999987653211110 00000 0000 001123567899999999999999
Q ss_pred HHHHHHhhcCCCeEeecccCCC------------------------cHHHHHHHHHhh---CC-CeEEEcccCCCCCCCC
Q 015125 177 WLRWLRNTVGFQDFRFDFARGY------------------------SAKYVKEYIEGA---RP-IFSVGEYWDSCNYNSH 228 (413)
Q Consensus 177 ~~~~w~~~~gvDGfR~D~a~~i------------------------~~~~~~~~~~~~---~~-~~~vgE~~~~~~~~~~ 228 (413)
++++|+.++||||||+|++++. ..++|+++...+ ++ .++++|.+.....
T Consensus 163 ~~~~~~~~~gvDG~R~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~--- 239 (396)
T d1m7xa3 163 NALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPG--- 239 (396)
T ss_dssp HHHHHHHHSCCCEEEECCSHHHHCC--------------CTTCCHHHHHHHHHHHHHHHHSSTTCEEEECCSSCCTT---
T ss_pred HHHHHHHHhCCcceeeechhhhccchhcccccccccccccccccchHHHHHHHHHHHHhhhCCCceEEEeecCCCcc---
Confidence 9999999999999999987543 133556555443 34 6778997754211
Q ss_pred CCCCccchhhHhHhhhhc-cCCCcccccCccchHHHHHHhccch-hhhh--h--hcCCCCCcccccCCcceecccCCCCC
Q 015125 229 GLDYNQDSHRQRIINWID-GTGQLSAAFDFTTKGILQEAVKGQF-WRLR--D--AQGKPPGVMGWWPSRAVTFLDNHDTG 302 (413)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~df~~~~~l~~~~~g~~-~~~~--~--~~~~~~~~~~~~p~~~v~flenHD~~ 302 (413)
+..+.. ........+++.+...+........ .... . ..................+..+||..
T Consensus 240 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (396)
T d1m7xa3 240 ------------VSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTENFVLPLSHDEVVHGKK 307 (396)
T ss_dssp ------------TTBCTTTTBSCCSEEECHHHHHHHHHHHHSCGGGGGGCTHHHHGGGTTTTTSCEEEEECGGGSSTTSC
T ss_pred ------------ccccccccccchhhhhccchhhhhhhhccchhhhhhhhccccchhhhhhhhhhccccccccccccCCC
Confidence 111111 1112334455555555555442211 1000 0 00000000011112345678889988
Q ss_pred cCCCCCCCC----hhHHHHHHHHHhcCCCeeEEecCcccCC------------c---------hhHHHHHHHHHHHHHhC
Q 015125 303 STQAHWPFP----SNHIMEGYAYILMHPGIPSVFYDHFYDW------------G---------DSIHNQIVKLMDVRRQQ 357 (413)
Q Consensus 303 R~~~~~~~~----~~~~~la~a~ll~~pGiP~Iy~G~E~gw------------~---------~~l~~~i~~L~~lR~~~ 357 (413)
|........ ..++++|++++||+||+||||||+|+|- . +++++++|+|++||+++
T Consensus 308 ~~~~~~~~~~~~~~~~~~la~a~llt~pG~P~IYyGdEiG~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~L~~lR~~~ 387 (396)
T d1m7xa3 308 SILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHH 387 (396)
T ss_dssp CHHHHSCSSHHHHHHHHHHHHHHHHHSSSEEEEETTTTTTCSSCCCTTSCCCGGGGCSSCCHHHHHHHHHHHHHHHHTTC
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhCCccEeecccccCCCCCCCCCCCCChhhccCcchhhHHHHHHHHHHHHHHHcC
Confidence 765544332 2467899999999999999999999862 1 25899999999999999
Q ss_pred cccCCCCe
Q 015125 358 DIHSRSSI 365 (413)
Q Consensus 358 p~l~~G~~ 365 (413)
|+|.+|++
T Consensus 388 paL~~~~~ 395 (396)
T d1m7xa3 388 KAMHELDF 395 (396)
T ss_dssp GGGTSCTT
T ss_pred HHhhccCC
Confidence 99999876
|
| >d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=1.1e-48 Score=402.65 Aligned_cols=188 Identities=17% Similarity=0.207 Sum_probs=146.0
Q ss_pred eeEEEeeecCCCCC-----ccHHH-----------HHhhhhhHHHcCCCEEEcCCCCCCCC-------------------
Q 015125 26 EILFQGFNWESCKH-----DWWRN-----------LERKVPDISKSGFTSVWLPPATHSFA------------------- 70 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-----g~~~g-----------i~~~L~yLk~lGv~~I~L~Pi~~~~~------------------- 70 (413)
-||||++.++|++. |+++| |++||||||+||||+||||||+++++
T Consensus 22 ~viYei~vr~F~d~~~d~~~~~~G~f~~~~~~~~~~i~~LdyL~~LGVtaiwL~Pi~~~~~~d~~~~~~~~~~~~~~~~~ 101 (563)
T d2fhfa5 22 MTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLC 101 (563)
T ss_dssp CEEEEECHHHHHTTCTTSCGGGTTSGGGGGCTTSHHHHHHHHHHHHTCCEEEESCCEEESSSCCCGGGCCCTTSBHHHHH
T ss_pred cEEEEecchhhhccCCCCccccCcChhhccccCcchhhhHHHHHHcCCCEEEeCCcccCCcccccccccccccccccccc
Confidence 69999999988643 45555 99999999999999999999987542
Q ss_pred ----------------------------------------------------CCCCCcccCCCCCCCCCC-------HHH
Q 015125 71 ----------------------------------------------------PEGYLPQNLYSLNSSYGS-------EHL 91 (413)
Q Consensus 71 ----------------------------------------------------~~gY~~~d~~~id~~~Gt-------~~~ 91 (413)
+|||+|.|||+|+|+||| .+|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wGYdv~dy~~i~p~~Gt~~d~~~~l~E 181 (563)
T d2fhfa5 102 EVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIKE 181 (563)
T ss_dssp HHCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTTBCHHHHHHHHHTTSSSCCCCCCEEEEEEECSTTSSCCSTTHHHHH
T ss_pred ccccccchhhhhhhccccchhhhhhhcccccccchhhhhhcccccccccCcCCCCCChhhcccccCccCcCcchhhHHHH
Confidence 469999999999999999 788
Q ss_pred HHHHHHHH-HHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHH
Q 015125 92 LKALLHKM-KQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFV 170 (413)
Q Consensus 92 ~~~Lv~~~-h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v 170 (413)
||+||++| |++|||||||+|+||++.+|+|+......... +..|... .... .....+.+.+++++.++.+
T Consensus 182 fk~lV~a~~H~rGIkVIlD~V~NHts~~h~wf~~~~~~~~~-~~~y~~~-----~~~~---~~~~~~~~~~~~~~~~~~~ 252 (563)
T d2fhfa5 182 FRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIV-PWYYQRL-----NETT---GSVESATCCSDSAPEHRMF 252 (563)
T ss_dssp HHHHHHHHHHTSCCEEEEEECTTEESCCSSSCTTCCHHHHS-TTTSBCB-----CTTT---CCBCCTTSSEEBCTTSHHH
T ss_pred HHHHHHHHhhccCceeeecCcccccCCCCCchhhcccCCCC-Ccceecc-----CCCC---CcccCCCCCcccCccchhH
Confidence 99999987 89999999999999999999987432110000 0000000 0000 0111245678899999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC---C-CeEEEcccCC
Q 015125 171 RKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYWDS 222 (413)
Q Consensus 171 r~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~---~-~~~vgE~~~~ 222 (413)
+.++.++..+|+.++++||||+|++..++..++..+...+. + ...++|.|..
T Consensus 253 ~~~~~d~~~~~~~~~~~dg~r~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (563)
T d2fhfa5 253 AKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQILSAWERIKALNPDIYFFGEGWDS 308 (563)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHTTCTTCEEEECCCCC
T ss_pred HHHHHHhhHHHHhhhcccccchhhhhhcchhhhhhhhHHHhhhCcccccccccccc
Confidence 99999999999999999999999999999998877655432 3 5678888865
|
| >d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Sucrose phosphorylase species: Bifidobacterium adolescentis [TaxId: 1680]
Probab=100.00 E-value=9.3e-46 Score=363.96 Aligned_cols=306 Identities=13% Similarity=0.154 Sum_probs=196.5
Q ss_pred ceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015125 25 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~ 102 (413)
++|.|+.|. ++-.+|||+||++|||||++||||+|||+||++.+ ++|||+|.||++|||+|||.+|||+| ++
T Consensus 3 ~~~~~~~y~-d~~~~Gdl~g~~~~Ldyl~~LGv~~I~L~Pi~~~~~~~d~GY~~~Dy~~vdp~~Gt~~d~k~L-----~r 76 (434)
T d1r7aa2 3 NKVQLITYA-DRLGDGTIKSMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVDERLGSWDDVAEL-----SK 76 (434)
T ss_dssp SSCEEEECS-SSBSSSSHHHHHHHHHHHSTTTCCEEEECCCEECSSSSSTTSSCSEEEEECTTTCCHHHHHHH-----HT
T ss_pred CceEEEEec-CCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCcCcccccccCcccCCHHHHHHH-----Hh
Confidence 479999998 66677999999999999999999999999999844 68999999999999999999999999 36
Q ss_pred CCEEEEEEccccCcCCCCCCC--------Ccccc-cCC---CCCC----------CC---CCCeeccC-CCCCCCcCCCC
Q 015125 103 KVRAMADIVINHRVGTTQGHG--------GKYNR-YDG---IPLS----------WD---EHAVTSCT-GGLGNGSTGDN 156 (413)
Q Consensus 103 Gi~VilD~V~NH~~~~~~~~~--------~~y~~-~~~---~~~~----------~~---~~~~~~~~-~~~~~~~~~~~ 156 (413)
||+||||+|+||+|..++++. +.|.. +.. .... +. ........ ...........
T Consensus 77 Gi~VIlDvV~NHt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (434)
T d1r7aa2 77 THNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGIYRPRPGLPFTHYKFAGKTRLVWVSF 156 (434)
T ss_dssp TSEEEEEEECSEEETTSHHHHHHHHHGGGSTTGGGBCBHHHHCTTCBCHHHHHTSCCSSSSCSEEEEEETTEEEEEECSS
T ss_pred CCeeeEEecccccccccchhhhhhhccCCCcccccccccCCCCCCccccCCCCcccccCCcccccccccccccceeeecc
Confidence 999999999999999887432 11211 110 0000 00 00000000 00000111223
Q ss_pred CCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcH-------------HHHHHHHHhhC---C-CeEEEcc
Q 015125 157 FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA-------------KYVKEYIEGAR---P-IFSVGEY 219 (413)
Q Consensus 157 ~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~-------------~~~~~~~~~~~---~-~~~vgE~ 219 (413)
...+|++|+.+|.|++++.+++++|+ ++||||||+|+++++.. ++++++...++ . ....++.
T Consensus 157 ~~~~~~ln~~~p~v~~~~~~~~~~w~-~~g~dg~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (434)
T d1r7aa2 157 TPQQVDIDTDSDKGWEYLMSIFDQMA-ASHVSYIRLDAVGYGAKEAGTSCFMTPKTFKLISRLREEGVKRGLEILIEVHS 235 (434)
T ss_dssp STTEEEBCTTSHHHHHHHHHHHHHHH-HTTCCEEEEETGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHHTTCEEEECCCS
T ss_pred ccccchhcccchhhhhhhhhHhhhhh-ccCCcccccccccccccccccccccccchhhHHHHHHHHHhcccccccccccc
Confidence 46789999999999999999999998 88999999999987742 34555554433 1 1222222
Q ss_pred cCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHh-ccchhhhhh-----------------hcC--
Q 015125 220 WDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFWRLRD-----------------AQG-- 279 (413)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~-~g~~~~~~~-----------------~~~-- 279 (413)
+. .....+.. .....+++.......... .++...... .+.
T Consensus 236 ~~-----------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 295 (434)
T d1r7aa2 236 YY-----------------KKQVEIAS---KVDRVYDFALPPLLLHALSTGHVEPVAHWTDIRPNNAVTVLDTHDGIGVI 295 (434)
T ss_dssp CH-----------------HHHHHHHT---TSSEEEECSHHHHHHHHHHHCCCHHHHHHHHHSCSSEEECSCCSSCBCST
T ss_pred ch-----------------hhhhhhcc---ccchhccccccchhhhhhhccCcchHHHHHhhhhhhhhhhhhhcchhccc
Confidence 21 11111111 112334433332222221 111100000 000
Q ss_pred ------CCCCcccc----------------c----CCcceecccCCCCCcCCCC----CCCChhHHHHHHHHHhcCCCee
Q 015125 280 ------KPPGVMGW----------------W----PSRAVTFLDNHDTGSTQAH----WPFPSNHIMEGYAYILMHPGIP 329 (413)
Q Consensus 280 ------~~~~~~~~----------------~----p~~~v~flenHD~~R~~~~----~~~~~~~~~la~a~ll~~pGiP 329 (413)
......+. . ......+..|||..|+.+. +..+.+++++|++++||+||+|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~r~~la~~lllt~pGiP 375 (434)
T d1r7aa2 296 DIGSDQLDRSLKGLVPDEDVDNLVNTIHANTHGESQAATGAAASNLDLYQVNSTYYSALGCNDQHYIAARAVQFFLPGVP 375 (434)
T ss_dssp TTSCCSSCTTSCCSSCHHHHHHHHHHHHHHTTTHHHHHSGGGSBCSCSSSBCSCHHHHTTTCHHHHHHHHHHHHHSSSEE
T ss_pred cccchhhhhhhhcchhHHHHHHHHHHHHhhccCCcccccccccCCCcchhhhhhhhhhhcChHHHHHHHHHHHHhcCCcc
Confidence 00000000 0 0023456788998887653 3456788999999999999999
Q ss_pred EEecCcccCCc------------------------------hhHHHHHHHHHHHHHhC
Q 015125 330 SVFYDHFYDWG------------------------------DSIHNQIVKLMDVRRQQ 357 (413)
Q Consensus 330 ~Iy~G~E~gw~------------------------------~~l~~~i~~L~~lR~~~ 357 (413)
|||||+|+|-. .++++++|+|++|||+.
T Consensus 376 ~iyyGdE~G~~~d~~~~~~~~~~~~~nr~~~~w~~~~~~~~~~l~~~~k~Li~lR~~~ 433 (434)
T d1r7aa2 376 QVYYVGALAGKNDMELLRKTNNGRDINRHYYSTAEIDENLKRPVVKALNALAKFRNEL 433 (434)
T ss_dssp EEEHHHHTTCCCCHHHHHHHCBGGGGGCCCBCHHHHHHHTTSHHHHHHHHHHHHHHHC
T ss_pred eEEcchhhCCCCChhhhcccCCCCcccccCCCHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 99999998621 26899999999999985
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9.6e-46 Score=382.38 Aligned_cols=307 Identities=12% Similarity=0.094 Sum_probs=213.3
Q ss_pred eeEEEeeecCCCC-------------------CccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-------CCCCCCcccC
Q 015125 26 EILFQGFNWESCK-------------------HDWWRNLERKVPDISKSGFTSVWLPPATHSF-------APEGYLPQNL 79 (413)
Q Consensus 26 ~~i~~~f~~~~~~-------------------~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-------~~~gY~~~d~ 79 (413)
.||||+|.++|++ .|||+||+++|||||+||||+||||||+++. .+|||+|.||
T Consensus 84 ~viYei~v~~F~~~~~~g~~~~~~~~~~g~~~~Gd~~Gi~~kLdYLk~LGvtaI~L~Pi~~~~~~~~~~~~~~GY~~~dy 163 (572)
T d1gjwa2 84 SVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNP 163 (572)
T ss_dssp CCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCHHHHHHTHHHHHHHTCCEEEECCCEEECCSSCSSSSCCTTSEEEE
T ss_pred cEEEEEechhhcCCCCCCCcccccCcccCccCCCCHHHHHHhhHHHHHcCCCEEEeCCcccCccccCCCCCCCCCCccCC
Confidence 6999999997764 2899999999999999999999999999754 3789999999
Q ss_pred CCCCCC--------CCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCC----CCCCCCCC----Cee-
Q 015125 80 YSLNSS--------YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG----IPLSWDEH----AVT- 142 (413)
Q Consensus 80 ~~id~~--------~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~----~~~~~~~~----~~~- 142 (413)
++++|+ |||.+|||+||++||++||+||||+|+||++.+|+++.....+|.. ...+..+. +..
T Consensus 164 ~~~dp~~~~~~~~~~Gt~~dfk~lV~~~H~~GI~VIlDvV~NHts~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 243 (572)
T d1gjwa2 164 MELDERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRAEELPFK 243 (572)
T ss_dssp EEECGGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEEEEECTTEEETTCGGGTTCGGGSCCEEGGGSTTCCCCCCTTSCSB
T ss_pred CCCCcccccccccCCCCHHHHHHHHHHHHhcCcEEEEEeeecccccCCHHHHhCccccccccccccccCCCCCCCCCccc
Confidence 999975 7999999999999999999999999999999998765421111000 00000000 000
Q ss_pred --------------------------------------------------------------ccCC----CCCC------
Q 015125 143 --------------------------------------------------------------SCTG----GLGN------ 150 (413)
Q Consensus 143 --------------------------------------------------------------~~~~----~~~~------ 150 (413)
...+ .+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgfr~d~~~~~~~~~~~~~~~~~~~~~~~~ 323 (572)
T d1gjwa2 244 VPDEDELEIIYNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNILELIVKEFGIITPPGFSDLINDPQPTWDDVTFLRL 323 (572)
T ss_dssp CCCHHHHHHHHTSHHHHHHHTTBCCCHHHHCHHHHHHHHTCSSCHHHHHHHHHSEECCCBCCSSBTCCSCCBTTEEECCC
T ss_pred CCCCcccccccCCceeeeeccccCCCccccCHHHHHHHHHHhhhHHhcccceeeccccccccccccCCcccccchhhhhh
Confidence 0000 0000
Q ss_pred ----C-----cCCC----------CCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC
Q 015125 151 ----G-----STGD----------NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 151 ----~-----~~~~----------~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~ 211 (413)
+ .... .......++..++++++.+.+++++|++.+|++|+|+|.+.+++..+|+.+...++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (572)
T d1gjwa2 324 YLDHPEASKRFLDPNQPPYVLYDVIKASKFPGKEPNRELWEYLAGVIPHYQKKYGIDGARLDMGHALPKELLDLIIKNVK 403 (572)
T ss_dssp BSSCCGGGGGGSCTTCCCCCCHHHHCTTTSCCSSBCHHHHHHHTTHHHHHHHHHCCCEEEESSGGGSCHHHHHHHHHHHH
T ss_pred cccCcchhhhhhcccccchhhccchhhcccccccccHHHHHHHhhhhhHHHhhccccchhhhccccCchhHHHHHHHHHh
Confidence 0 0000 00122345667899999999999999999999999999999999999998887654
Q ss_pred ---C-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHh-ccchhhhhhhcCCCCCccc
Q 015125 212 ---P-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMG 286 (413)
Q Consensus 212 ---~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~-~g~~~~~~~~~~~~~~~~~ 286 (413)
+ .+++||.+... . .+.. ....+++.+........ ........+.. .
T Consensus 404 ~~~~~~~~~~e~~~~~--------------~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 454 (572)
T d1gjwa2 404 EYDPAFVMIAEELDME--------------K----DKAS----KEAGYDVILGSSWYFAGRVEEIGKLPDIA-------E 454 (572)
T ss_dssp HHCTTCEEEECCCCGG--------------G----HHHH----HHHTCSEECCCHHHHHTCTTTGGGHHHHH-------H
T ss_pred ccCCceEEEeeecccc--------------c----chhh----hhcchhhHhccchhhHHHHHHHHHHHhhc-------c
Confidence 3 45788865431 0 1111 11223332222111111 11111111111 1
Q ss_pred ccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccCC---------------------------
Q 015125 287 WWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYDW--------------------------- 339 (413)
Q Consensus 287 ~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~gw--------------------------- 339 (413)
......++|++|||++|+.+.......+.++|++++||+||+||||||||+|-
T Consensus 455 ~~~~~~~~~~~nHD~~R~~~~~~~~~~~~~~a~~~l~~~~GiP~iy~GdE~G~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 534 (572)
T d1gjwa2 455 ELVLPFLASVETPDTPRIATRKYASKMKKLAPFVTYFLPNSIPYVNTGQEIGEKQPMNLGLDTDPNLRKVLSPTDEFFGK 534 (572)
T ss_dssp TCSSCEEECSCCTTSCCGGGSTTHHHHHHHHHHHHHTSTTEEEEEETTGGGTCCSCSCCCSSCCGGGGGCSCTTSTTTTC
T ss_pred ccccceeeeccCCCccchhhhcCCHHHHHHHHHHHHHHhcccceeecchhcCCCCCCCCCCCCCcccccCCCcccccccc
Confidence 12335679999999999998876666788999999999999999999999751
Q ss_pred --------------chhHHHHHHHHHHHHHhCcccC
Q 015125 340 --------------GDSIHNQIVKLMDVRRQQDIHS 361 (413)
Q Consensus 340 --------------~~~l~~~i~~L~~lR~~~p~l~ 361 (413)
++++++++|+||+|||+||+|.
T Consensus 535 ~~~~~~~~~d~~~~~~~l~~~~k~Li~lRk~~~~~~ 570 (572)
T d1gjwa2 535 LAFFDHYVLHWDSPDRGVLNFIKKLIKVRHEFLDFV 570 (572)
T ss_dssp CTTTSCCCCCTTSCCHHHHHHHHHHHHHHHHTHHHH
T ss_pred cccccccccccccCCHHHHHHHHHHHHHHHhCHHhh
Confidence 1369999999999999999874
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=100.00 E-value=2.5e-35 Score=303.31 Aligned_cols=180 Identities=14% Similarity=0.180 Sum_probs=131.2
Q ss_pred CCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 37 CKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 37 ~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
..++||++++++|||||+|||++|||+||+++. ++|||+++||+.|||+|||+++|++||++||++||+||+|+|+||
T Consensus 11 ~~gftF~~~~~~LpYL~~LGVs~IyLsPi~~a~~gS~HGYDv~D~~~Vdp~lGt~edf~~LV~aaH~~Gm~VIlDiVpNH 90 (653)
T d1iv8a2 11 NKNFNFGDVIDNLWYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQDIVPNH 90 (653)
T ss_dssp BTTBCHHHHHHTHHHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEECTTTTHHHHHHHHHHHHHHTTCEEEEEECCSE
T ss_pred CCCCCHHHHHHhhHHHHHCCCCEEEECccCCCCCCCCCCccccCccccchhcCCHHHHHHHHHHHHHCCCEEEEEECCCc
Confidence 456799999999999999999999999999754 689999999999999999999999999999999999999999999
Q ss_pred CcCCCCCC----------CCcccccCCCCCCCCCCCe-----------------------------eccC------C---
Q 015125 115 RVGTTQGH----------GGKYNRYDGIPLSWDEHAV-----------------------------TSCT------G--- 146 (413)
Q Consensus 115 ~~~~~~~~----------~~~y~~~~~~~~~~~~~~~-----------------------------~~~~------~--- 146 (413)
||.+++++ .+.|..|.. ..|.+... ..+. .
T Consensus 91 ~g~d~~~~~~~Dvl~~G~~S~y~~~fd--i~~~~~~~~~p~lg~~~~~~l~~g~~~~~~d~~~~~~~~~~~~~P~~~~~~ 168 (653)
T d1iv8a2 91 MAVNSLNWRLMDVLKMGKKSKYYTYFD--FFPEDDKIRLPILGEDLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGN 168 (653)
T ss_dssp EECCTTCHHHHHHHHHGGGSTTGGGBC--BCTTCSSEEEEEESSCHHHHHHTTCEEEEECSSCEEEEETTEEEECSCCCS
T ss_pred ccCCcccHHHHHhhhcCCCCCCccccc--ccCCCCCccCCCCCccchhccCCCcceecCCCCceecccccccCCCCCcCc
Confidence 99887532 233332221 11111000 0000 0
Q ss_pred --------------CCCCCcC-C--CCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCC--cHHHHHHHH
Q 015125 147 --------------GLGNGST-G--DNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY--SAKYVKEYI 207 (413)
Q Consensus 147 --------------~~~~~~~-~--~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i--~~~~~~~~~ 207 (413)
.|..+.. . .+...+++++.++++|. .++.++|. ++||||||+|+++++ |..||+++.
T Consensus 169 ~~~~~~~~q~y~l~~W~~~~~~~rFfdv~~l~~lr~e~p~Vf---~~v~~~w~-elGVDGfRID~vd~L~dp~~y~~~lr 244 (653)
T d1iv8a2 169 DIYDTLQKQNYTLMSWKNPPSYRRFFDVNTLIGVNVEKDHVF---QESHSKIL-DLDVDGYRIDHIDGLYDPEKYINDLR 244 (653)
T ss_dssp SHHHHHTTSSEEEEETTSCCSBCEETTEEEEEEBCTTSHHHH---HHHTTTGG-GSCCSEEEETTGGGCSCHHHHHHHHH
T ss_pred cchhhhhccccCCCCCCCCcccccccccccccccccccHHHH---HHHHHHHH-HcCCcEEEeeCcccccCHHHHHHHHH
Confidence 0000000 0 01123456677777765 44556676 999999999999999 688999999
Q ss_pred HhhCCCeEEEc-ccCC
Q 015125 208 EGARPIFSVGE-YWDS 222 (413)
Q Consensus 208 ~~~~~~~~vgE-~~~~ 222 (413)
+.+++.++++| +|..
T Consensus 245 ~~~~~~~ivvEkil~~ 260 (653)
T d1iv8a2 245 SIIKNKIIIVEKILGF 260 (653)
T ss_dssp HHHTTCEEEECCCCCT
T ss_pred HhcCCCEEEEEeecCC
Confidence 99998777666 5543
|
| >d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.30 E-value=2.4e-06 Score=84.36 Aligned_cols=64 Identities=13% Similarity=-0.017 Sum_probs=50.6
Q ss_pred ccCCceeEEEeeec-CCCCCccH-HHHHhhhhhHHHcCCCEEEcCCCCCCC-----CCCCCCcccCCCCCC
Q 015125 21 IRNGREILFQGFNW-ESCKHDWW-RNLERKVPDISKSGFTSVWLPPATHSF-----APEGYLPQNLYSLNS 84 (413)
Q Consensus 21 ~~~~~~~i~~~f~~-~~~~~g~~-~gi~~~L~yLk~lGv~~I~L~Pi~~~~-----~~~gY~~~d~~~id~ 84 (413)
-+-..||++|.|-- +..+=||| +++.+-++.+++.|++.++|+|+.+.. .+..|++.+-+.++|
T Consensus 23 ~~R~~Gvllh~~SLp~~~GiGDfG~~a~~fvd~l~~~G~~~wQiLPL~~t~~~~~~~~SPYs~~S~falNP 93 (523)
T d1x1na1 23 DRRRAGILLHPTSFPGPYGIGDLGPQAFKFLDWLHLAGCSLWQVLPLVPPGKRGNEDGSPYSGQDANCGNT 93 (523)
T ss_dssp GCCEEEEECCGGGSCCTTSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCBCCSSSCTTCTTSBSCSSSCCG
T ss_pred CCcceEEEecCccCCCCCCCCcccHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCCCCcchhcchhcCH
Confidence 44456899999974 33333899 899999999999999999999999863 246788888777664
|
| >d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Aquifex aeolicus [TaxId: 63363]
Probab=98.06 E-value=1.5e-05 Score=77.72 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=49.9
Q ss_pred ceeEEEeeec-CCCCCccH-HHHHhhhhhHHHcCCCEEEcCCCCCCC---CCCCCCcccCCCCCCCCC
Q 015125 25 REILFQGFNW-ESCKHDWW-RNLERKVPDISKSGFTSVWLPPATHSF---APEGYLPQNLYSLNSSYG 87 (413)
Q Consensus 25 ~~~i~~~f~~-~~~~~g~~-~gi~~~L~yLk~lGv~~I~L~Pi~~~~---~~~gY~~~d~~~id~~~G 87 (413)
.||++|.|-= +.++=||| +.+..-++.++++|++.|+|+|+++.. .+..|++.+-+.++|-|=
T Consensus 4 ~Gvll~~~SLps~~GIGDfG~~a~~~id~~a~~G~~~~QllPl~~t~~~~~~SPYsp~S~falNPlyI 71 (485)
T d1tz7a1 4 AGILLHVTSLPSPYGIGDLGKEAYRFLDFLKECGFSLWQVLPLNPTSLEAGNSPYSSNSLFAGNYVLI 71 (485)
T ss_dssp EEEECCGGGSCCSSSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCCCGGGTTCTTSCSCSSSCCGGGS
T ss_pred eeeeecccccCCCCCCCCHHHHHHHHHHHHHHcCCCEEEecCCCCCCCCCCCCCcCcccchhcCHHHc
Confidence 4788888753 22333899 899999999999999999999999864 357899988888875553
|
| >d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: YicI catalytic domain-like domain: Alpha-galactosidase GalA catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.77 E-value=7.4e-06 Score=77.03 Aligned_cols=129 Identities=11% Similarity=0.150 Sum_probs=83.9
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCc--ccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLP--QNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~--~d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+-+.+.+.++.++++|++.|+|= .||.. .| +.++ .+|. .++.|++.+|++||++.+-+.+..++.
T Consensus 21 ~e~~i~~~a~~~~~~g~~~i~iD--------dgW~~~~gd-~~~d~~~FP---glk~l~~~~h~~G~k~gl~~~p~~~~~ 88 (348)
T d1zy9a2 21 TWEETLKNLKLAKNFPFEVFQID--------DAYEKDIGD-WLVTRGDFP---SVEEMAKVIAENGFIPGIWTAPFSVSE 88 (348)
T ss_dssp CHHHHHHHHHHGGGTTCSEEEEC--------TTSEEETTE-EEEECTTCC---CHHHHHHHHHHTTCEEEEEECTTEEET
T ss_pred CHHHHHHHHHHHHcCCCcEEEEC--------cccccCCCC-ceECcccCc---CHHHHHHHHHhcCCEEEEEeeeccccC
Confidence 57888999999999999999873 23221 12 2233 4555 589999999999999999998776555
Q ss_pred CCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 118 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
.++.... .++|.... .. ..............-+|+.+|++++++.+.++.+. +.|||+|.+|..
T Consensus 89 ~s~~~~~--------~~~~~~~~----~~-~~~~~~~~~~~~~~~lD~~~p~~~~~~~~~~~~~~-~~Gvd~~K~D~~ 152 (348)
T d1zy9a2 89 TSDVFNE--------HPDWVVKE----NG-EPKMAYRNWNKKIYALDLSKDEVLNWLFDLFSSLR-KMGYRYFKIDFL 152 (348)
T ss_dssp TCHHHHH--------CGGGBCEE----TT-EECEEEEETTEEEEEBCTTCHHHHHHHHHHHHHHH-HTTCCEEEECCG
T ss_pred CcHHHHh--------Cccceecc----CC-CCccccccCCCCeeccCCCcHHHHHHHHHHHHHHH-hcCCCEEEeCCC
Confidence 4421110 01111100 00 00000000012234579999999999999999876 899999999975
|
| >d1eswa_ c.1.8.1 (A:) Amylomaltase MalQ {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Thermus aquaticus [TaxId: 271]
Probab=97.59 E-value=0.00013 Score=71.44 Aligned_cols=64 Identities=9% Similarity=-0.001 Sum_probs=51.0
Q ss_pred CCceeEEEeeecC-CCCCccH-HHHHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCCCCC
Q 015125 23 NGREILFQGFNWE-SCKHDWW-RNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSY 86 (413)
Q Consensus 23 ~~~~~i~~~f~~~-~~~~g~~-~gi~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id~~~ 86 (413)
-+.||++|.|-=. .++=||| +++.+-++.|+++|++.++|+|+.+.. ....|++.+-+.++|-|
T Consensus 5 R~~Gvllh~~SLp~~~GiGdfG~~a~~fid~l~~~G~~~wQiLPl~pt~~~~SPYs~~S~fAlNPly 71 (500)
T d1eswa_ 5 RAFGLLLHPTSLPGPYGVGVLGREARDFLRFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGNPYL 71 (500)
T ss_dssp SEEEEECCGGGSCCSSSSCCSSHHHHHHHHHHHHTTCCEEECCCCSCBCTTCCTTSBSCSSCCCGGG
T ss_pred cceeeEeCccccCCCCCCcchhHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCcCcccchhcCHHH
Confidence 4567889888532 2223899 899999999999999999999999854 35689998888887555
|
| >d1ht6a1 b.71.1.1 (A:348-404) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Probab=97.25 E-value=0.00058 Score=45.30 Aligned_cols=53 Identities=34% Similarity=0.516 Sum_probs=44.8
Q ss_pred CCCCeEEEEecCCEEEEEECCEEEEEEcCCCCCC--CCCCcEEeeeCCceEEeeC
Q 015125 361 SRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCP--AGKEWTLATSGHKYAVWHK 413 (413)
Q Consensus 361 ~~G~~~~~~~~~~~~~~~r~~~~lv~lnn~~~~~--~~~~~~~~~s~~~~~~~~~ 413 (413)
.+...+++..+.++++-.-+++++|-|+.....| ...+|+++.||..|+||.+
T Consensus 3 ~~S~v~I~~Ae~dlYaA~Id~kv~mKIGp~~d~~~~~p~~w~~a~sG~dYaVWek 57 (57)
T d1ht6a1 3 ATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIPAGFVTSAHGNDYAVWEK 57 (57)
T ss_dssp TTCCEEEEEEETTEEEEEETTTEEEEESSCSCCGGGSCTTCEEEEEETTEEEEEC
T ss_pred CCceeEEEEcCCCcEEEEeCCeEEEEEeCcccCCCCCCCCcEEEeeCCcEEEEeC
Confidence 3567889999999999989999999999865443 2458999999999999986
|
| >d1avaa1 b.71.1.1 (A:347-403) Plant alpha-amylase {Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId: 4513]
Probab=97.22 E-value=0.00048 Score=45.61 Aligned_cols=52 Identities=37% Similarity=0.585 Sum_probs=45.0
Q ss_pred CCCeEEEEecCCEEEEEECCEEEEEEcCCCCCCC--CCCcEEeeeCCceEEeeC
Q 015125 362 RSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPA--GKEWTLATSGHKYAVWHK 413 (413)
Q Consensus 362 ~G~~~~~~~~~~~~~~~r~~~~lv~lnn~~~~~~--~~~~~~~~s~~~~~~~~~ 413 (413)
+...+++..+.++++-.-+++++|-|+....+|+ ..+|+.+.||..|+||.+
T Consensus 3 ~S~v~I~~Ae~dlY~A~Id~kv~~KIGp~~~~p~~~p~~w~~a~sG~dYaVWek 56 (57)
T d1avaa1 3 ESKLQIIEADADLYLAEIDGKVIVKLGPRYDVGNLIPGGFKVAAHGNDYAVWEK 56 (57)
T ss_dssp TCCEEEEEEETTEEEEEETTTEEEEESSCCCCGGGSCSSEEEEEEETTEEEEEE
T ss_pred CcceEEEEccCCcEEEEeCCeEEEEEcCcccCCCcCCCCcEEEeeCCCEEEEEe
Confidence 5678899999999999889999999999766653 358999999999999975
|
| >d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: YicI catalytic domain-like domain: Putative glucosidase YicI, domain 2 species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=0.0018 Score=59.80 Aligned_cols=158 Identities=9% Similarity=-0.014 Sum_probs=90.8
Q ss_pred ccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcC--CCEEEcCCCCCCCCCCCCCcccCCCCC-CCCCCHHH
Q 015125 15 TDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSG--FTSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHL 91 (413)
Q Consensus 15 ~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lG--v~~I~L~Pi~~~~~~~gY~~~d~~~id-~~~Gt~~~ 91 (413)
|.+||.++=| +|.=.|. ..+-+-+.+.+.+..+++.| +++|+|-.-+.. +|.-.+ +..| .+|- +
T Consensus 14 p~lpP~walG----~~~~~~~-~~~~~~~~v~~~~~~~r~~~iP~d~i~iD~~w~~----~~~~~~-f~~d~~~FP---d 80 (338)
T d2f2ha4 14 PALPPAWSFG----LWLTTSF-TTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMK----AFQWCD-FEWDPLTFP---D 80 (338)
T ss_dssp CCCCCGGGGS----EEEECCS-SSCCCHHHHHHHHHHHHHTTCCCCEEEECGGGBC----TTCCSS-CCBCTTTCS---C
T ss_pred CCCCcHHHHH----HHHHhCC-CCCCCHHHHHHHHHHHHHcCCCcceEEEcCchhc----CCCcCc-eeeCcccCC---C
Confidence 4557777554 2222221 11113456788888888888 778887543221 122122 2333 2343 5
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCc-CCCCCCCCCcCCCCCHHH
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGS-TGDNFHGVPNIDHTQHFV 170 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dln~~~~~v 170 (413)
.++||+++|++|++|++-+.+ |++.+++. |..... ...+.. ..+ +... ..+......-+|+.||++
T Consensus 81 p~~~i~~l~~~G~~~~l~~~P-~i~~~~~~----~~~~~~-~g~~~~-----~~~--g~~~~~~~~~~~~~~~D~tnp~a 147 (338)
T d2f2ha4 81 PEGMIRRLKAKGLKICVWINP-YIGQKSPV----FKELQE-KGYLLK-----RPD--GSLWQWDKWQPGLAIYDFTNPDA 147 (338)
T ss_dssp HHHHHHHHHHTTCEEEEEECS-EECTTSTT----HHHHHH-HTCBCB-----CTT--SSBCCBSSSSTTBEEBCTTSHHH
T ss_pred HHHHHHHHHHCCCeEEEeecC-ccCCCChh----HHHHHh-CCEEEE-----CCC--CCceeeecCCCCccccccCCHHH
Confidence 789999999999999999866 45554431 110000 000000 000 0000 011112334579999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEeecccCCCc
Q 015125 171 RKDIIAWLRWLRNTVGFQDFRFDFARGYS 199 (413)
Q Consensus 171 r~~l~~~~~~w~~~~gvDGfR~D~a~~i~ 199 (413)
++...+.++..+ +.|||||-+|+....+
T Consensus 148 ~~w~~~~~~~~~-~~Gidg~w~D~~e~~~ 175 (338)
T d2f2ha4 148 CKWYADKLKGLV-AMGVDCFKTDFGERIP 175 (338)
T ss_dssp HHHHHHHHHHHH-HTTCCEEEECCCCCCC
T ss_pred HHHHHHHhhccc-ccCCceEEecCCCCCC
Confidence 999999999987 8999999999875443
|
| >d1wzla2 b.71.1.1 (A:503-585) Maltogenic amylase {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Maltogenic amylase species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=96.74 E-value=0.00065 Score=49.32 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=36.7
Q ss_pred CCeEEEEecC--CEEEEEE---CCEEEEEEcCCCCC-----C----CCCCcEEeeeCCceEE
Q 015125 363 SSIKILEAQS--NLYSAII---GDKVCMKIGDGSWC-----P----AGKEWTLATSGHKYAV 410 (413)
Q Consensus 363 G~~~~~~~~~--~~~~~~r---~~~~lv~lnn~~~~-----~----~~~~~~~~~s~~~~~~ 410 (413)
|+++.++.++ +++||.| +++++|++|++... | .+..|+++++|..+.+
T Consensus 1 G~~~~l~ad~~~~v~af~R~~~~e~vlVv~N~s~~~~~v~lp~~~~~~~~~~dllsg~~~~~ 62 (83)
T d1wzla2 1 GNVRSWHADKQANLYAFVRTVQDQHVGVVLNNRGEKQTVLLQVPESGGKTWLDCLTGEEVHG 62 (83)
T ss_dssp CEEEEEEEETTTTEEEEEEEETTEEEEEEEECSSSCEEEEEECCGGGCSEEEETTTCCEEEC
T ss_pred CceEEEEECCCCCEEEEEEECCCCEEEEEEECCCccEEEEEcCccccceeeEEccCCcEEEe
Confidence 6788888764 6999999 67899999996632 2 3456888888888764
|
| >d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=96.56 E-value=0.0025 Score=58.49 Aligned_cols=134 Identities=13% Similarity=0.034 Sum_probs=74.4
Q ss_pred CCceeEEEeeecCC-----CCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 015125 23 NGREILFQGFNWES-----CKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLH 97 (413)
Q Consensus 23 ~~~~~i~~~f~~~~-----~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~ 97 (413)
+|+++++++++.-. ...-+-+.+.+.|+.+|++|+|+|=+....... ...+.+.. -.. .....+.|+++++
T Consensus 14 nG~~~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~~k~~G~N~vR~~~~~~~~-~~~~~~~~-g~~--~~~~l~~ld~~l~ 89 (370)
T d1rh9a1 14 NGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTWAFSHGG-SRPLQSAP-GVY--NEQMFQGLDFVIS 89 (370)
T ss_dssp TTEEECEEEEECTTHHHHHHSTTTTHHHHHHHHHHHHTTCCEEEEESSCSSS-SSCSEEET-TEE--CHHHHHHHHHHHH
T ss_pred CCEEEEEEEEecccCcccccCCCCHHHHHHHHHHHHHCCCeEEEECCccCcc-CcccCCCC-Ccc--cHHHHHHHHHHHH
Confidence 67788888887210 011245668888999999999998763211110 00000000 000 0112678899999
Q ss_pred HHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHH
Q 015125 98 KMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAW 177 (413)
Q Consensus 98 ~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~ 177 (413)
.|.++||+||+|+... .+. ......|..+ .. ..+. ...-+...+.+|.+++.+++.
T Consensus 90 ~a~~~Gi~vi~~l~~~-~~~--~~~~~~~~~~-------~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~ 145 (370)
T d1rh9a1 90 EAKKYGIHLIMSLVNN-WDA--FGGKKQYVEW-------AV------QRGQ--------KLTSDDDFFTNPMVKGFYKNN 145 (370)
T ss_dssp HHHHTTCEEEEECCBS-SSS--SSBHHHHHHH-------HH------HTTC--------CCCCGGGGGTCHHHHHHHHHH
T ss_pred HHHHcCCEEEEecccc-ccc--ccCCcccccc-------cc------cCCC--------cCCccccccCCHHHHHHHHHH
Confidence 9999999999998532 111 0000111000 00 0000 011234456789999999999
Q ss_pred HHHHHhh
Q 015125 178 LRWLRNT 184 (413)
Q Consensus 178 ~~~w~~~ 184 (413)
++.+++.
T Consensus 146 ~~~~v~r 152 (370)
T d1rh9a1 146 VKVVLTR 152 (370)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 8888854
|
| >d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endocellulase E1 species: Acidothermus cellulolyticus [TaxId: 28049]
Probab=96.49 E-value=0.003 Score=58.09 Aligned_cols=87 Identities=18% Similarity=0.349 Sum_probs=58.6
Q ss_pred cCCceeEEEeeecCCCCC------c-cHHHHHhhhhhHHHcCCCEEEcCCCCCC---CCCCCCCcccCCCCCCCC---CC
Q 015125 22 RNGREILFQGFNWESCKH------D-WWRNLERKVPDISKSGFTSVWLPPATHS---FAPEGYLPQNLYSLNSSY---GS 88 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~~------g-~~~gi~~~L~yLk~lGv~~I~L~Pi~~~---~~~~gY~~~d~~~id~~~---Gt 88 (413)
..|+.+.+++.+|--... | +-..+++-++.||++|+|+|=| |+.-. +..-.+.+. .++.++.+ ..
T Consensus 16 ~~G~~~~l~GvN~~g~~~~~~~~~~~~~~~~~~~~~~i~~~G~N~VRl-pv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 93 (358)
T d1ecea_ 16 ANNVPVRIAGINWFGFETCNYVVHGLWSRDYRSMLDQIKSLGYNTIRL-PYSDDILKPGTMPNSIN-FYQMNQDLQGLTS 93 (358)
T ss_dssp TTSCEECCEEEECCCBTTTTCSCTTTTTSCHHHHHHHHHHTTCCEEEE-EEEGGGGSTTCCCCSCC-CSSSCTTTTTCCH
T ss_pred CCCCEEEEEEEccCcccccccccccCCccHHHHHHHHHHHcCCCEEEe-cCcHHHccCCCCCCCcc-ccccChhhhchhH
Confidence 568889999999831111 2 2334788899999999999988 33211 111111222 23444443 33
Q ss_pred HHHHHHHHHHHHHcCCEEEEEE
Q 015125 89 EHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+.|+++|+.|+++||+||||+
T Consensus 94 ~~~ld~~v~~a~~~Gl~Vildl 115 (358)
T d1ecea_ 94 LQVMDKIVAYAGQIGLRIILDR 115 (358)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCceeeec
Confidence 6889999999999999999998
|
| >d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Trichoderma reesei [TaxId: 51453]
Probab=96.27 E-value=0.0039 Score=56.82 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=55.6
Q ss_pred CCceeEEEeeecCC-CCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCC-------CCHHHHHH
Q 015125 23 NGREILFQGFNWES-CKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSY-------GSEHLLKA 94 (413)
Q Consensus 23 ~~~~~i~~~f~~~~-~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~-------Gt~~~~~~ 94 (413)
+|+++.+.+.++-. ....+-..+...|+.||++|+|+|=+.-.......+-+....+..+.... ...+.+.+
T Consensus 15 nG~p~~~~G~N~~~~~~~~~~~~~~~~l~~~~~~G~N~iR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~ 94 (344)
T d1qnra_ 15 DGKVGYFAGTNCYWCSFLTNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQIWFQKLSATGSTINTGADGLQTLDY 94 (344)
T ss_dssp TTEESCEEEEECGGGGGCCCHHHHHHHHHHHHHTTCCEEECCCCCEESSCCSTTCCCSEECCTTCCEECCSTTTTHHHHH
T ss_pred CCEEEEEEEEccCCCCcCCCHHHHHHHHHHHHhcCCCEEEECCcccccccCCCCccchhhcccccCccccCHHHHHHHHH
Confidence 67778888876421 22246788999999999999999976211111111111111111111111 12577999
Q ss_pred HHHHHHHcCCEEEEEEc
Q 015125 95 LLHKMKQHKVRAMADIV 111 (413)
Q Consensus 95 Lv~~~h~~Gi~VilD~V 111 (413)
++++|+++||+||+|+.
T Consensus 95 ~~~~a~~~Gi~vi~~l~ 111 (344)
T d1qnra_ 95 VVQSAEQHNLKLIIPFV 111 (344)
T ss_dssp HHHHHHHHTCEEEEESC
T ss_pred HHHHHHHcCCeeEeecc
Confidence 99999999999999986
|
| >d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Outer surface protein, N-terminal domain domain: Outer surface protein, N-terminal domain species: Bacillus cereus [TaxId: 1396]
Probab=96.26 E-value=0.002 Score=56.11 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=41.6
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
.+++...+-|+-.++.|++.|+.+=- .++ +.--..+.|++|++.||+.||+||+|+.++
T Consensus 14 ~~~e~~~~yi~~a~~~Gf~~iFTSL~---------------~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~ 73 (244)
T d1x7fa2 14 STKEKDMAYISAAARHGFSRIFTCLL---------------SVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPA 73 (244)
T ss_dssp SCHHHHHHHHHHHHTTTEEEEEEEEC---------------CC--------HHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecCc---------------cCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCHH
Confidence 35777777777788999999996321 111 011125679999999999999999999666
|
| >d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exomannosidase species: Cellvibrio mixtus [TaxId: 39650]
Probab=96.22 E-value=0.011 Score=54.43 Aligned_cols=86 Identities=10% Similarity=0.154 Sum_probs=58.3
Q ss_pred CCceeEEEeeecC-------CCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCC-----HH
Q 015125 23 NGREILFQGFNWE-------SCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGS-----EH 90 (413)
Q Consensus 23 ~~~~~i~~~f~~~-------~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt-----~~ 90 (413)
+|+++.+++.++- .....+...+.+.|+.||+||+|+|=+....+.. .++...+..+.+..|. .+
T Consensus 14 nG~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~l~~~k~~G~N~iR~~~~~~~~---~~~~~~~~~~~~~~g~~de~gl~ 90 (410)
T d1uuqa_ 14 QGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLKAIGVNNLRVLAVSEKS---EINSAVKPAVTNGFGNYDETLLQ 90 (410)
T ss_dssp TTEEECEEEEECTTHHHHTCSSTTCCHHHHHHHHHHHHHTTCCEEEEECCCBCC---CSTTSCSSCSBSSTTCBCHHHHH
T ss_pred CCEEEEEEEEecCCcccccccCCCCCHHHHHHHHHHHHHCCCcEEEeCCccccc---ccccccCCCcccccccccHHHHH
Confidence 6777888888742 1112377889999999999999988553221111 1112223344455555 45
Q ss_pred HHHHHHHHHHHcCCEEEEEEc
Q 015125 91 LLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 91 ~~~~Lv~~~h~~Gi~VilD~V 111 (413)
.+.+++++|+++||+||+|+.
T Consensus 91 ~~d~~l~~a~~~Gi~vi~~l~ 111 (410)
T d1uuqa_ 91 GLDYLLVELAKRDMTVVLYFN 111 (410)
T ss_dssp HHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHcCCeeEEecc
Confidence 678999999999999999995
|
| >d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: endo-1,4-beta-mannosidase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=96.19 E-value=0.0048 Score=55.57 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=54.9
Q ss_pred cCCceeEEEeeecC---CCC---Cc----cHHHHHhhhhhHHHcCCCEEEcCCCCCCC-----CCCCCCcccCCCCCCCC
Q 015125 22 RNGREILFQGFNWE---SCK---HD----WWRNLERKVPDISKSGFTSVWLPPATHSF-----APEGYLPQNLYSLNSSY 86 (413)
Q Consensus 22 ~~~~~~i~~~f~~~---~~~---~g----~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-----~~~gY~~~d~~~id~~~ 86 (413)
.+|+++.+++.++. +.. .+ +.+.+.+.|++||++|+|+|=|....... ...+. + ..++ .
T Consensus 11 ~nG~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~N~vRv~~~~~~~~~~~~~~~~~-~---~~~~--~ 84 (350)
T d2c0ha1 11 YNGHHIFLSGANQAWVNYARDFGHNQYSKGKSTFESTLSDMQSHGGNSVRVWLHIEGESTPEFDNNGY-V---TGID--N 84 (350)
T ss_dssp ETTEEECEEEEECCCSSTTCSSSTTCHHHHHHHHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSC-E---EECC--T
T ss_pred ECCEEEEEEEEecCCcccccccCcccCCCCHHHHHHHHHHHHHcCCCEEEECcccCccCCcccccCCC-C---CccC--h
Confidence 37778889998863 111 11 45667888999999999999652111110 01110 0 1111 1
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 87 GSEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 87 Gt~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
...+.+.++++.|.++||+||+|+.
T Consensus 85 ~~~~~~d~~~~~a~~~gi~vi~d~~ 109 (350)
T d2c0ha1 85 TLISDMRAYLHAAQRHNILIFFTLW 109 (350)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hhhHHHHHHHHHHHHCCCEEEEEec
Confidence 2368899999999999999999994
|
| >d1ji1a2 b.71.1.1 (A:555-637) Maltogenic amylase {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Maltogenic amylase species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]
Probab=96.17 E-value=0.0033 Score=45.34 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=35.3
Q ss_pred eEEEEecC--CEEEEEE---CCEEEEEEcCCCCC------------CCCCCcEEeeeCCceEE
Q 015125 365 IKILEAQS--NLYSAII---GDKVCMKIGDGSWC------------PAGKEWTLATSGHKYAV 410 (413)
Q Consensus 365 ~~~~~~~~--~~~~~~r---~~~~lv~lnn~~~~------------~~~~~~~~~~s~~~~~~ 410 (413)
|+.+..++ ++++|.| ++.++|++||+... +.+..|+++++|..|.+
T Consensus 2 f~~l~ad~~~~v~ay~R~~~~e~vlV~~N~s~~~~~v~l~~~~~~~~~~~~~~dll~g~~~~v 64 (83)
T d1ji1a2 2 FMTLITDDTNKIYSYGRFDNVNRIAVVLNNDSVSHTVNVPVWQLSMPNGSTVTDKITGHSYTV 64 (83)
T ss_dssp EEEEEEETTTTEEEEEEECSSCEEEEEEECSSSCEEEEECGGGGTCCTTCEEEETTTCCEEEC
T ss_pred cEEEEecCCCCEEEEEEEcCCcEEEEEEeCCCCCEEEEecccccccccCcEEEEccCCCEEEE
Confidence 56777654 6999999 67899999996532 24567999999988765
|
| >d1ea9c2 b.71.1.1 (C:504-583) Maltogenic amylase {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Maltogenic amylase species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Probab=95.87 E-value=0.0039 Score=44.66 Aligned_cols=46 Identities=15% Similarity=0.236 Sum_probs=33.1
Q ss_pred eEEEEecC--CEEEEEE---CCEEEEEEcCCCCC-----C-CCCCcEEeeeCCceEE
Q 015125 365 IKILEAQS--NLYSAII---GDKVCMKIGDGSWC-----P-AGKEWTLATSGHKYAV 410 (413)
Q Consensus 365 ~~~~~~~~--~~~~~~r---~~~~lv~lnn~~~~-----~-~~~~~~~~~s~~~~~~ 410 (413)
++++..++ +++||.| +++++||+|++... | .++.|+++++|..+.+
T Consensus 2 f~~L~a~~d~~v~ay~R~~~~e~vlVv~N~S~~~~tv~lp~~~~~~~~l~~g~~~~~ 58 (80)
T d1ea9c2 2 FKFLTAEKNSRQIAYLREDDQDTILVVMNNDKAGHTLTLPVRHAQWTHLWQDDVLTA 58 (80)
T ss_dssp CCCSBCCSSCCEEEEEEECSSCEEEEEEECSSSCEEEEEECCSSSCCEEBSTTCCEE
T ss_pred eEEEecCCCCCEEEEEEecCCCEEEEEEECCCCCEEEEecCCCCeEEEeecCceeec
Confidence 34454443 6999999 67899999997643 2 4578888888877654
|
| >d1j0ha2 b.71.1.1 (A:506-588) Neopullulanase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Neopullulanase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.55 E-value=0.016 Score=41.36 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=23.8
Q ss_pred CCeEEEEecC--CEEEEEE---CCEEEEEEcCCC
Q 015125 363 SSIKILEAQS--NLYSAII---GDKVCMKIGDGS 391 (413)
Q Consensus 363 G~~~~~~~~~--~~~~~~r---~~~~lv~lnn~~ 391 (413)
|+++++..++ +++||.| +++++|++|++.
T Consensus 1 G~~~~l~~~d~~~v~ay~R~~~~~~vLVv~N~S~ 34 (83)
T d1j0ha2 1 GEISFLHADDEMNYLIYKKTDGDETVLVIINRSD 34 (83)
T ss_dssp CEEEEECCSCTTTEEEEEEECSSCEEEEEEECSS
T ss_pred CceEEEecCCCCCEEEEEEECCCCEEEEEEeCCC
Confidence 6788888654 6999999 678999999954
|
| >d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Bacillus sp. JAMB-602 [TaxId: 244966]
Probab=95.47 E-value=0.011 Score=52.71 Aligned_cols=73 Identities=14% Similarity=0.284 Sum_probs=50.7
Q ss_pred cCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 015125 22 RNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~ 101 (413)
+.|+++++++-++...-. -+...+.++.||++|+|+|=| |+... ++ +. -+..+.|+++|+.|.+
T Consensus 13 ~nG~~~~l~Gvn~~~~~~--~~~~~~d~~~~~~~G~N~VRl-~~~~~----~~-----~~----~~~~~~ld~~v~~a~~ 76 (297)
T d1wkya2 13 ANGNPFVMRGINHGHAWY--KDQATTAIEGIANTGANTVRI-VLSDG----GQ-----WT----KDDIQTVRNLISLAED 76 (297)
T ss_dssp TTSCBCCCEEEEECGGGC--GGGHHHHHHHHHTTTCSEEEE-EECCS----SS-----SC----CCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEeccCcccC--chHHHHHHHHHHHCCCcEEEE-eccCC----Cc-----cC----ccHHHHHHHHHHHHHH
Confidence 356777888776531111 234667799999999999876 33221 11 11 1247889999999999
Q ss_pred cCCEEEEEE
Q 015125 102 HKVRAMADI 110 (413)
Q Consensus 102 ~Gi~VilD~ 110 (413)
+||+||+|+
T Consensus 77 ~Gi~vildl 85 (297)
T d1wkya2 77 NNLVAVLEV 85 (297)
T ss_dssp TTCEEEEEE
T ss_pred CCCceEeec
Confidence 999999998
|
| >d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase CelC species: Clostridium thermocellum [TaxId: 1515]
Probab=95.29 E-value=0.032 Score=50.84 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=38.6
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCccc-CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQN-LYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d-~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+-++.||++|+|+|=| ||.-. .+.+.+ -..+++ +..+.|.++|+.|+++||+||||+
T Consensus 31 e~d~~~i~~~G~n~vRl-pi~~~----~~~~~~~~~~~~~--~~~~~ld~~v~~a~~~gi~vild~ 89 (340)
T d1ceoa_ 31 EKDIETIAEAGFDHVRL-PFDYP----IIESDDNVGEYKE--DGLSYIDRCLEWCKKYNLGLVLDM 89 (340)
T ss_dssp HHHHHHHHHHTCCEEEE-EEEGG----GTBCSSSTTCBCH--HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEe-ecCHH----HhccCCCCCccCH--HHHHHHHHHHHHHHHcCCEEEEEe
Confidence 56788999999999998 44211 000000 001110 125679999999999999999998
|
| >d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.97 E-value=0.06 Score=50.48 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=37.8
Q ss_pred hhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEEE
Q 015125 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYG--SEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 47 ~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~G--t~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
+-++.||++|+|+|=|+ | +++.+.+. .-++.+. ..+-|+++|+.|.++||+||||+
T Consensus 77 ~D~~~i~~~G~N~VRiP-i----~~~~~~~~---~~~~~~~~~~~~~ld~~v~~a~~~gl~VilDl 134 (408)
T d1h4pa_ 77 QDFANIASQGFNLVRIP-I----GYWAFQIL---DDDPYVSGLQESYLDQAIGWARNNSLKVWVDL 134 (408)
T ss_dssp HHHHHHHHTTCCEEEEE-E----EGGGTCCC---TTCCCCCSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHCCCCEEEEe-c----cHHHhcCC---CCCCCcChhHHHHHHHHHHHHHHCCCEEEEEe
Confidence 34789999999999885 2 11111111 1112222 25669999999999999999998
|
| >d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Thermomonospora fusca [TaxId: 2021]
Probab=94.92 E-value=0.012 Score=52.68 Aligned_cols=72 Identities=18% Similarity=0.395 Sum_probs=49.4
Q ss_pred cCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 015125 22 RNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~ 101 (413)
..|+++++++-+|.. .++....+.++.||++|+|+|=|+ +.... .+ .....+.++++|+.|.+
T Consensus 14 ~nG~~~~lrGvn~~~---~~~~~~~~~~~~i~~~G~N~VRl~-~~~~~---------~~----~~~~~~~~~~~v~~a~~ 76 (302)
T d1bqca_ 14 ANGQEFIIRGVSHPH---NWYPQHTQAFADIKSHGANTVRVV-LSNGV---------RW----SKNGPSDVANVISLCKQ 76 (302)
T ss_dssp TTSCBCCCEEEEECT---TTCTTCTTHHHHHHHTTCSEEEEE-ECCSS---------SS----CCCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEeecCc---ccccchHHHHHHHHhcCCCEEEEe-ccccc---------cc----CcchHHHHHHHHHHHHH
Confidence 457778888887631 123333455788999999999762 21110 00 11246889999999999
Q ss_pred cCCEEEEEE
Q 015125 102 HKVRAMADI 110 (413)
Q Consensus 102 ~Gi~VilD~ 110 (413)
+||+||||+
T Consensus 77 ~Gi~vildl 85 (302)
T d1bqca_ 77 NRLICMLEV 85 (302)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEe
Confidence 999999999
|
| >d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Alkaline cellulase K catalytic domain species: Bacillus sp. [TaxId: 1409]
Probab=94.90 E-value=0.02 Score=52.59 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=50.6
Q ss_pred cCCceeEEEeeecCCCCCccHHH--HHhhhhhHH-HcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 015125 22 RNGREILFQGFNWESCKHDWWRN--LERKVPDIS-KSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHK 98 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~~g~~~g--i~~~L~yLk-~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~ 98 (413)
++|++|+|++..|.- ..++.. -.+.++.|+ ++|+|+|=| |+.. ++. -|..+|.+ .+.+++.|+.
T Consensus 30 ~~G~~v~lrGv~~~~--~~w~~~~~~~~~~~~l~~~~G~N~VRl-p~~~-------~~~-~~~~~~~~--~~~ld~~V~~ 96 (357)
T d1g01a_ 30 EDGTPVQLRGMSTHG--LQWFGEIVNENAFVALSNDWGSNMIRL-AMYI-------GEN-GYATNPEV--KDLVYEGIEL 96 (357)
T ss_dssp TTSCBCCCEEEEESC--HHHHGGGCSHHHHHHHHTTSCCSEEEE-EEES-------SSS-STTTCTTH--HHHHHHHHHH
T ss_pred CCCCEEEEEEEecCc--chhcccccCHHHHHHHHHhcCCCEEEE-eeee-------cCC-CCccCHHH--HHHHHHHHHH
Confidence 457788888887640 001111 134566776 589999987 4321 221 24455543 6789999999
Q ss_pred HHHcCCEEEEEE
Q 015125 99 MKQHKVRAMADI 110 (413)
Q Consensus 99 ~h~~Gi~VilD~ 110 (413)
|.++||.||||+
T Consensus 97 a~~~GiyVIlD~ 108 (357)
T d1g01a_ 97 AFEHDMYVIVDW 108 (357)
T ss_dssp HHHTTCEEEEEE
T ss_pred HHHCCCEEEEee
Confidence 999999999998
|
| >d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId: 76935]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase Cel5a species: Bacillus agaradhaerens [TaxId: 76935]
Probab=94.68 E-value=0.027 Score=50.36 Aligned_cols=76 Identities=12% Similarity=0.161 Sum_probs=49.8
Q ss_pred cCCceeEEEeeecCCCCCccHH--HHHhhhhhHH-HcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 015125 22 RNGREILFQGFNWESCKHDWWR--NLERKVPDIS-KSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHK 98 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~~g~~~--gi~~~L~yLk-~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~ 98 (413)
+.|+++++++.+|-- ..++. .-.+.++.|+ ++|+|+|=| |+++... .+..+|.+ .+.+.++|+.
T Consensus 19 ~nG~~v~lrGvn~~~--~~~~~~~~~~~~~~~l~~~~G~N~VR~-~~~~~~~--------~~~~~~~~--~~~ld~~v~~ 85 (300)
T d7a3ha_ 19 ERGEQVQLKGMSSHG--LQWYGQFVNYESMKWLRDDWGINVFRA-AMYTSSG--------GYIDDPSV--KEKVKEAVEA 85 (300)
T ss_dssp TTSCBCCCEEEEESC--HHHHGGGCSHHHHHHHHHHTCCCEEEE-EEESSTT--------STTTCTTH--HHHHHHHHHH
T ss_pred CCCCEEEEEEEeCCC--cccccccCCHHHHHHHHHHcCCCEEEE-eeEcCcc--------CcccCHHH--HHHHHHHHHH
Confidence 467788999988640 10110 0134455664 799999987 4433211 13334433 6789999999
Q ss_pred HHHcCCEEEEEE
Q 015125 99 MKQHKVRAMADI 110 (413)
Q Consensus 99 ~h~~Gi~VilD~ 110 (413)
|.++||.||+|+
T Consensus 86 a~~~Gl~Vild~ 97 (300)
T d7a3ha_ 86 AIDLDIYVIIDW 97 (300)
T ss_dssp HHHHTCEEEEEE
T ss_pred HHHCCCEEEEee
Confidence 999999999998
|
| >d1cxla3 b.71.1.1 (A:407-496) Cyclodextrin glycosyltransferase {Bacillus circulans, different strains [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Cyclodextrin glycosyltransferase species: Bacillus circulans, different strains [TaxId: 1397]
Probab=94.61 E-value=0.011 Score=42.96 Aligned_cols=28 Identities=4% Similarity=-0.047 Sum_probs=24.2
Q ss_pred CCeEEEEecCCEEEEEE---CCEEEEEEcCC
Q 015125 363 SSIKILEAQSNLYSAII---GDKVCMKIGDG 390 (413)
Q Consensus 363 G~~~~~~~~~~~~~~~r---~~~~lv~lnn~ 390 (413)
|+++.+..++++++|.| ++.++||+|.+
T Consensus 1 G~~~~rw~~~DvyvyeR~~g~~~vlVAiNr~ 31 (90)
T d1cxla3 1 GSTQERWINNDVLIYERKFGSNVAVVAVNRN 31 (90)
T ss_dssp CEEEEEEECSSEEEEEEEETTEEEEEEEECC
T ss_pred CccEEEEECCCEEEEEEEcCCCEEEEEEECC
Confidence 56788889999999999 67899999984
|
| >d1cyga3 b.71.1.1 (A:403-491) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.02 E-value=0.018 Score=41.73 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=24.7
Q ss_pred CCeEEEEecCCEEEEEE---CCEEEEEEcCCC
Q 015125 363 SSIKILEAQSNLYSAII---GDKVCMKIGDGS 391 (413)
Q Consensus 363 G~~~~~~~~~~~~~~~r---~~~~lv~lnn~~ 391 (413)
|+++....++++++|.| ++.++||+|.+.
T Consensus 1 Gs~~~rwi~~DvyvyeR~fg~~~vlVAiNr~~ 32 (89)
T d1cyga3 1 GDTEQRWINGDVYVYERQFGKDVVLVAVNRSS 32 (89)
T ss_dssp CEEEEEEECSSEEEEEEEETTEEEEEEEECCS
T ss_pred CceeEEEECCCEEEEEEecCCcEEEEEEECCC
Confidence 56788888999999999 678999999853
|
| >d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]
Probab=93.99 E-value=0.034 Score=50.11 Aligned_cols=51 Identities=10% Similarity=-0.009 Sum_probs=38.7
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+.+..||+.|+|+|=|. ++..+ . +.....+.++++|+.|+++||+||+|+
T Consensus 30 ~~~~~~lk~~G~n~VRi~-vW~~p-------~------~g~~~~~~~~~~v~~a~~~gl~vil~~ 80 (332)
T d1hjsa_ 30 QPLENILAANGVNTVRQR-VWVNP-------A------DGNYNLDYNIAIAKRAKAAGLGVYIDF 80 (332)
T ss_dssp CCHHHHHHHTTCCEEEEE-ECSSC-------T------TCTTSHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccHHHHHHHcCCCEEEee-eeecC-------C------CCccCHHHHHHHHHHHHHCCCEEEEEe
Confidence 345667999999999874 54221 1 122358999999999999999999998
|
| >d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase CelA species: Clostridium cellulolyticum [TaxId: 1521]
Probab=93.94 E-value=0.016 Score=54.00 Aligned_cols=62 Identities=13% Similarity=0.308 Sum_probs=43.3
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
..+.++.||++|+|+|=| ||. ...+....-|.+++.+ .+-++++|+.|+++||+||||+ +|.
T Consensus 63 t~~~i~~ik~~Gfn~vRi-Pv~----w~~~~~~~~~~i~~~~--l~~v~~vV~~a~~~Gl~VIldl--Hh~ 124 (380)
T d1edga_ 63 TKQMIDAIKQKGFNTVRI-PVS----WHPHVSGSDYKISDVW--MNRVQEVVNYCIDNKMYVILNT--HHD 124 (380)
T ss_dssp CHHHHHHHHHHTCCEEEE-CCC----CGGGEETTTTEECHHH--HHHHHHHHHHHHTTTCEEEEEC--CSC
T ss_pred cHHHHHHHHHcCCCEEEE-ccc----HHHhcCCCCCccCHHH--HHHHHHHHHHHHHcCCEEEEec--ccC
Confidence 466789999999999987 442 1222111114444322 5679999999999999999998 553
|
| >d3bmva3 b.71.1.1 (A:407-495) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Probab=93.86 E-value=0.02 Score=41.48 Aligned_cols=29 Identities=7% Similarity=0.014 Sum_probs=24.4
Q ss_pred CCeEEEEecCCEEEEEE---CCEEEEEEcCCC
Q 015125 363 SSIKILEAQSNLYSAII---GDKVCMKIGDGS 391 (413)
Q Consensus 363 G~~~~~~~~~~~~~~~r---~~~~lv~lnn~~ 391 (413)
|+++..+.++++++|.| ++.++|++|.+.
T Consensus 1 G~~~~~~in~DvyvyeR~~~~~~vlVAiNr~~ 32 (89)
T d3bmva3 1 GTTQQRWINNDVYIYERKFGNNVALVAINRNL 32 (89)
T ss_dssp CEEEEEEECSSEEEEEEEETTEEEEEEEECCS
T ss_pred CceeEEEECCCEEEEEEecCCcEEEEEEECCC
Confidence 56788889999999998 667889999853
|
| >d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Fungus (Aspergillus aculeatus) [TaxId: 5053]
Probab=93.80 E-value=0.095 Score=47.68 Aligned_cols=52 Identities=10% Similarity=0.023 Sum_probs=39.5
Q ss_pred hhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcc
Q 015125 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 47 ~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~ 112 (413)
+.+..||+.|||.|=|- +...+. +..-+.+.++++++.|+++||+|++|+..
T Consensus 31 d~~~~lk~~G~n~VRlr-vW~~p~-------------~g~~~~~~~~~~~~~a~~~Gm~vll~~hy 82 (334)
T d1foba_ 31 ALETILADAGINSIRQR-VWVNPS-------------DGSYDLDYNLELAKRVKAAGMSLYLDLHL 82 (334)
T ss_dssp CHHHHHHHHTCCEEEEE-ECSCCT-------------TCTTCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cHHHHHHHcCCCEEEee-eeeCCC-------------CCcCcHHHHHHHHHHHHHCCCEEEEEecC
Confidence 35667899999999864 432221 12336899999999999999999999943
|
| >d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Yeast (Candida albicans) [TaxId: 5476]
Probab=93.74 E-value=0.029 Score=52.46 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=38.3
Q ss_pred hhhhHHHcCCCEEEcCCCC-CCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 48 KVPDISKSGFTSVWLPPAT-HSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 48 ~L~yLk~lGv~~I~L~Pi~-~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
-++.||++|+|+|=| ||. ....... . +.| .-+..+-|+++|+.|.++||+||||+
T Consensus 73 D~~~i~~~G~N~VRi-Pv~~~~~~~~~--~-~~~----~~~~~~~ld~~i~~a~~~gl~VilDl 128 (394)
T d2pb1a1 73 DFKQISNLGLNFVRI-PIGYWAFQLLD--N-DPY----VQGQVQYLEKALGWARKNNIRVWIDL 128 (394)
T ss_dssp HHHHHHHTTCCEEEE-EEEGGGTCCCT--T-CCC----CCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHCCCCEEEE-EecHHHhcCCC--C-Ccc----chhHHHHHHHHHHHHHHCCcEEEEEe
Confidence 488999999999998 542 1110000 0 000 11457889999999999999999998
|
| >d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: A4 beta-galactosidase species: Thermus thermophilus [TaxId: 274]
Probab=93.60 E-value=0.059 Score=48.31 Aligned_cols=113 Identities=9% Similarity=0.026 Sum_probs=64.6
Q ss_pred HHHHhhhhhHHHcCCCEEEcCCC-CC-C-CCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 43 RNLERKVPDISKSGFTSVWLPPA-TH-S-FAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 43 ~gi~~~L~yLk~lGv~~I~L~Pi-~~-~-~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
+-..+-++-+|+||+|+|=++.+ .. . +...-| | .+.+.+||++|+++||+||+.+. |-..
T Consensus 14 ~~~~~D~~~~~~~G~n~vR~~i~~W~~iep~~G~~---~----------~~~~d~~i~~~~~~Gi~~iv~l~--~~~~-- 76 (393)
T d1kwga2 14 ERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRL---E----------WGWLDEAIATLAAEGLKVVLGTP--TATP-- 76 (393)
T ss_dssp HHHHHHHHHHHHHTCCEEEECTTCHHHHCSBTTBC---C----------CHHHHHHHHHHHTTTCEEEEECS--TTSC--
T ss_pred HHHHHHHHHHHHcCCCEEEecccchhhcCCCCCcc---C----------HHHHHHHHHHHHHCCCEEEEEcC--CCCC--
Confidence 44667899999999999987632 11 0 111111 1 36889999999999999998884 2211
Q ss_pred CCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCC
Q 015125 120 QGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGF 187 (413)
Q Consensus 120 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gv 187 (413)
| .++.+....|..... .+. ...+...+..++.+|.+++.+...+..+...++-
T Consensus 77 P------~w~~~~~~~~~~~~~----~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (393)
T d1kwga2 77 P------KWLVDRYPEILPVDR----EGR-----RRRFGGRRHYCFSSPVYREEARRIVTLLAERYGG 129 (393)
T ss_dssp C------HHHHHHCGGGSCBCT----TSC-----BCCSSSSCCCCTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred c------hhhhccCcccccccC----CCc-----ccccccccccCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 1 011100011111100 000 0112233456778899999988888777655543
|
| >d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase homologue TM1752 species: Thermotoga maritima [TaxId: 2336]
Probab=93.25 E-value=0.067 Score=47.80 Aligned_cols=58 Identities=9% Similarity=0.096 Sum_probs=38.7
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcc-cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQ-NLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~-d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+-++.||++|+|+|=|+=-... ..+. +.+.+++ ...+-++++|+.|.++||+||||+
T Consensus 23 e~d~~~l~~~G~n~vRlpv~~~~-----~~~~~~~~~~~~--~~l~~ld~~v~~~~~~gi~vildl 81 (325)
T d1vjza_ 23 EEDFLWMAQWDFNFVRIPMCHLL-----WSDRGNPFIIRE--DFFEKIDRVIFWGEKYGIHICISL 81 (325)
T ss_dssp HHHHHHHHHTTCCEEEEEEEGGG-----TSCSSCTTCCCG--GGHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEecccHHH-----ccCCCCCCccCH--HHHHHHHHHHHHHHHcCCcEEEee
Confidence 34577899999999987411111 1110 1122222 237789999999999999999998
|
| >d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase Cel5a species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.23 E-value=0.018 Score=51.37 Aligned_cols=79 Identities=10% Similarity=0.070 Sum_probs=48.1
Q ss_pred CCceeEEEeeec--CCCCCccHHH-HHhhhhhHH-HcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 015125 23 NGREILFQGFNW--ESCKHDWWRN-LERKVPDIS-KSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHK 98 (413)
Q Consensus 23 ~~~~~i~~~f~~--~~~~~g~~~g-i~~~L~yLk-~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~ 98 (413)
.|+++.++++.+ .....+.-+. ..+.+..|+ ++|+|+|=+ |+.... ..+| ..+|. +..+.++++|+.
T Consensus 15 nG~~v~l~G~n~~~~~~~~~~~~~~~~~~~~~l~~~~G~N~vR~-~~~~~~-~~~~------~~~~~-~~~~~ld~vv~~ 85 (291)
T d1egza_ 15 GEKAKSFAGNSLFWSNNGWGGEKFYTADTVASLKKDWKSSIVRA-AMGVQE-SGGY------LQDPA-GNKAKVERVVDA 85 (291)
T ss_dssp TTEECCCEEEEEEECCTTSSGGGGCSHHHHHHHHHTTCCCEEEE-EEECSS-TTST------TTCHH-HHHHHHHHHHHH
T ss_pred CCcEEEEEEEecCCcCCCcCCccccCHHHHHHHHHhcCCCEEEE-eccccc-cCCc------ccCcH-HHHHHHHHHHHH
Confidence 566777777764 3222221111 134555666 699999987 443321 1122 22222 126778899999
Q ss_pred HHHcCCEEEEEE
Q 015125 99 MKQHKVRAMADI 110 (413)
Q Consensus 99 ~h~~Gi~VilD~ 110 (413)
|.++||.||||+
T Consensus 86 a~~~Giyvild~ 97 (291)
T d1egza_ 86 AIANDMYAIIGW 97 (291)
T ss_dssp HHHTTCEEEEEE
T ss_pred HHHCCCeEeeee
Confidence 999999999997
|
| >d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Bacillus licheniformis [TaxId: 1402]
Probab=93.05 E-value=0.067 Score=49.69 Aligned_cols=57 Identities=7% Similarity=-0.003 Sum_probs=38.9
Q ss_pred hhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 48 KVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 48 ~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
-++.||+.|||.|=| |++..+..+...+. . ...-..+.++++++.||++||+||+|+
T Consensus 43 ~~~~lk~~G~n~VRl-~vw~~~~~~~~~~~---~--~g~~~l~~~~~~~~~a~~~Gl~v~ldl 99 (387)
T d1ur4a_ 43 IFKTLKEAGVNYVRV-RIWNDPYDANGNGY---G--GGNNDLEKAIQIGKRATANGMKLLADF 99 (387)
T ss_dssp HHHHHHHTTCCEEEE-EECSCCBCTTCCBC---S--TTCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHcCCCEEEe-ecccCCcccccCcC---C--CccccHHHHHHHHHHHHHCCCEEEEEe
Confidence 478899999999885 44433222111100 0 111137899999999999999999998
|
| >d1nowa1 c.1.8.6 (A:200-552) beta-hexosaminidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-hexosaminidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.2 Score=45.78 Aligned_cols=122 Identities=10% Similarity=0.184 Sum_probs=70.7
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccC--------CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE-c
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNL--------YSLNSSYGSEHLLKALLHKMKQHKVRAMADI-V 111 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~--------~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~-V 111 (413)
..+.|.+.|+.++.+++|.++|-=- +. ..+.+....| +..+..| |.+|+++||+-|+++||+||-.+ +
T Consensus 16 ~~~~lk~~id~ma~~K~N~lhlHl~-D~-~~~~~e~~~~P~l~~~g~~~~~~~y-T~~d~~~lv~yA~~rgI~iiPEid~ 92 (353)
T d1nowa1 16 PVKIILKTLDAMAFNKFNVLHWHIV-DD-QSFPYQSITFPELSNKGSYSLSHVY-TPNDVRMVIEYARLRGIRVLPEFDT 92 (353)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECC-CS-SCCCBCCSSCHHHHHHHSSSTTSCB-CHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEe-cC-CCceeccCCCcchhhcCCCCCCCCc-CHHHHHHHHHHHHHCCCEEEecccc
Confidence 3788899999999999999987210 00 0111111111 1112222 89999999999999999999665 3
Q ss_pred cccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcC
Q 015125 112 INHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG 186 (413)
Q Consensus 112 ~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~g 186 (413)
+.|+..-.. ..+.-.....+. .........||..+|++.+++.+++...++-|.
T Consensus 93 PGH~~~~~~---------------~~pel~~~~~~~------~~~~~~~~~l~~~~~~t~~~~~~v~~e~~~~F~ 146 (353)
T d1nowa1 93 PGHTLSWGK---------------GQKDLLTPCYSR------QNKLDSFGPINPTLNTTYSFLTTFFKEISEVFP 146 (353)
T ss_dssp SSSCTTHHH---------------HSTTCEEECCC----------CCSEEEECTTCHHHHHHHHHHHHHHHHHCC
T ss_pred hhhHHHHHH---------------HhhhhcCCcccc------CCcCCCccccCCCchhhHHHHHHHHHHHHHhhc
Confidence 566544100 000000000000 000111224788899999999999988875443
|
| >d1uoka1 b.71.1.1 (A:480-558) Oligo-1,6-glucosidase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Oligo-1,6-glucosidase species: Bacillus cereus [TaxId: 1396]
Probab=92.40 E-value=0.12 Score=36.10 Aligned_cols=29 Identities=7% Similarity=0.142 Sum_probs=22.2
Q ss_pred CCeEEEEec-CCEEEEEE---CCEEEEEEcCCC
Q 015125 363 SSIKILEAQ-SNLYSAII---GDKVCMKIGDGS 391 (413)
Q Consensus 363 G~~~~~~~~-~~~~~~~r---~~~~lv~lnn~~ 391 (413)
|+++.+..+ ++++||.| +++++|++|.+.
T Consensus 1 G~~~~l~~~~~~V~aY~R~~~~~~~lVv~NfS~ 33 (79)
T d1uoka1 1 GSYDLILENNPSIFAYVRTYGVEKLLVIANFTA 33 (79)
T ss_dssp CEEEEESTTCSSEEEEEEEETTEEEEEEEECSS
T ss_pred CCeEEccCCCCcEEEEEEECCCcEEEEEEeCCC
Confidence 678888664 57999999 567788888854
|
| >d1edta_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Streptomyces plicatus, endoglycosidase H [TaxId: 1922]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Endo-beta-N-acetylglucosaminidase species: Streptomyces plicatus, endoglycosidase H [TaxId: 1922]
Probab=92.28 E-value=0.17 Score=44.23 Aligned_cols=84 Identities=12% Similarity=0.116 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCH
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQH 168 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~ 168 (413)
...+...|+.||++||||+|=+==+|.+. .|. . ..++
T Consensus 64 ~~~~~~~i~~l~~~g~KvllsiGG~~~~~--------------------------------------~f~---~--~~s~ 100 (265)
T d1edta_ 64 LDNAVTQIRPLQQQGIKVLLSVLGNHQGA--------------------------------------GFA---N--FPSQ 100 (265)
T ss_dssp HHTHHHHTHHHHHTTCEEEEEEEECTTSC--------------------------------------CTT---C--CSSH
T ss_pred hhhHHHHHHHHHhCCCEEEEEEccCcCCC--------------------------------------Cce---e--cCCH
Confidence 34577889999999999999872111111 011 1 2357
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEeecccCC------Cc-------HHHHHHHHHhhCCCeE
Q 015125 169 FVRKDIIAWLRWLRNTVGFQDFRFDFARG------YS-------AKYVKEYIEGARPIFS 215 (413)
Q Consensus 169 ~vr~~l~~~~~~w~~~~gvDGfR~D~a~~------i~-------~~~~~~~~~~~~~~~~ 215 (413)
+-|+.+++.+..+++++|+||+-+|--.. .+ ..++++++++....++
T Consensus 101 ~~~~~Fa~~~~~~~~~~~~DGiDiD~Eyp~~~~~~~~~~d~~~~~~ll~~lR~~l~~~~i 160 (265)
T d1edta_ 101 QAASAFAKQLSDAVAKYGLDGVDFDDEYAEYGNNGTAQPNDSSFVHLVTALRANMPDKII 160 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECSSCCTTGGGCCCCCSSHHHHHHHHHHHHCTTSEE
T ss_pred HHHHHHHHHHHHHHHhcCCCceEeccccCcccCCCCCcccHHHHHHHHHHHHHhhhhcEE
Confidence 78888899888888999999999996421 11 4577787777755443
|
| >d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas haloplanktis [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase Cel5a species: Pseudoalteromonas haloplanktis [TaxId: 228]
Probab=91.81 E-value=0.084 Score=46.82 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=46.9
Q ss_pred cCCceeEEEeeecCCCCCccHHH---HHhhhhhHH-HcCCCEEEcCCCCCCC-CCCCCCcccCCCCCCCCCCHHHHHHHH
Q 015125 22 RNGREILFQGFNWESCKHDWWRN---LERKVPDIS-KSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALL 96 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~~g~~~g---i~~~L~yLk-~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~~~~~Lv 96 (413)
..|+++.+++.++-....++... -.+.+..|+ ++|+|+|=|+ +...+ ....|. ..+. +..+.+.++|
T Consensus 14 ~nG~~v~l~Gvn~~~~~~~~~~~~~~~~~~~~~l~~~~g~N~VR~~-~~~~~~~~~~~~------~~~~-~~l~~ld~~v 85 (293)
T d1tvna1 14 AGGENTSFAGPSLFWSNTGWGAEKFYTAETVAKAKTEFNATLIRAA-IGHGTSTGGSLN------FDWE-GNMSRLDTVV 85 (293)
T ss_dssp ETTEECCCEEEEECCCCTTSSCGGGCSHHHHHHHHHHHCCSEEEEE-EECCTTSTTSTT------TCHH-HHHHHHHHHH
T ss_pred eCCcEEEEEEeecCCcCCCcCCCcccCHHHHHHHHHhCCCcEEEEe-cccccccccccc------cCcH-HHHHHHHHHH
Confidence 46778888887763222221110 123334454 6899999983 22111 111111 1111 1256788999
Q ss_pred HHHHHcCCEEEEEE
Q 015125 97 HKMKQHKVRAMADI 110 (413)
Q Consensus 97 ~~~h~~Gi~VilD~ 110 (413)
+.|+++||.||||+
T Consensus 86 ~~a~~~gi~vild~ 99 (293)
T d1tvna1 86 NAAIAEDMYVIIDF 99 (293)
T ss_dssp HHHHHTTCEEEEEE
T ss_pred HHHHHcCCEEEecC
Confidence 99999999999997
|
| >d1m53a1 b.71.1.1 (A:521-598) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Probab=91.18 E-value=0.22 Score=34.54 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=22.0
Q ss_pred CCeEEEEec-CCEEEEEE---CCEEEEEEcCCC
Q 015125 363 SSIKILEAQ-SNLYSAII---GDKVCMKIGDGS 391 (413)
Q Consensus 363 G~~~~~~~~-~~~~~~~r---~~~~lv~lnn~~ 391 (413)
|+++.+..+ ++++||.| +++++|++|.++
T Consensus 1 G~y~~l~~~~~~v~aY~R~~~~~~~lVv~NfS~ 33 (78)
T d1m53a1 1 GAYQDLNPQDNTVYAYTRTLGNERYLVVVNFKE 33 (78)
T ss_dssp SEEEESCTTCSSEEEEEEEETTEEEEEEEECSS
T ss_pred CceEEccCCCCcEEEEEEEcCCeEEEEEEeCCC
Confidence 677777655 47999999 567888888854
|
| >d1hx0a1 b.71.1.1 (A:404-496) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.04 E-value=0.06 Score=39.01 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=29.4
Q ss_pred EEecCCEEEEEECCEEEEEEcCCCCC--------CCCCCcEEeeeCC
Q 015125 368 LEAQSNLYSAIIGDKVCMKIGDGSWC--------PAGKEWTLATSGH 406 (413)
Q Consensus 368 ~~~~~~~~~~~r~~~~lv~lnn~~~~--------~~~~~~~~~~s~~ 406 (413)
+..+++.++|.|+++..|+|||.... .+.+.|++++||.
T Consensus 7 wdng~nqIAF~RG~kGFvAiNn~~~~~~~t~~T~LPaG~YCDVisG~ 53 (93)
T d1hx0a1 7 WDNGSNQVAFGRGNRGFIVFNNDDWQLSSTLQTGLPGGTYCDVISGD 53 (93)
T ss_dssp EECSSSEEEEEETTTEEEEEECSSSCEEEEEECCSCSEEEECTTTCC
T ss_pred EeCCCcEEEEecCCCcEEEEeCCCcccceeEecCCCCcceeEeeecc
Confidence 44556899999999999999995522 3457777777764
|
| >d2ebfx2 c.150.1.2 (X:875-1093) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: EreA/ChaN-like superfamily: EreA/ChaN-like family: PMT domain-like domain: Dermonecrotic toxin, ToxA species: Pasteurella multocida [TaxId: 747]
Probab=90.45 E-value=0.032 Score=45.92 Aligned_cols=97 Identities=11% Similarity=0.125 Sum_probs=57.2
Q ss_pred cccccccccccccccccc----ccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCccc
Q 015125 3 YTSKGFDETNQQTDLGAV----IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQN 78 (413)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d 78 (413)
|.+-+|||.+...+.-.+ +.+.++++.+==+. ..+=+++.++.||+-||+.|+|-=.-.-- +.=.+-+
T Consensus 10 y~~~~~de~~~~~~~~~ql~~ll~~~~Gllige~hg------S~RfvienM~~Lk~~GVTvI~lEHL~sD~--~Q~~Id~ 81 (219)
T d2ebfx2 10 YGDINYDEQFAAMSINERIEKCMNTYRGVAFQNSSK------SIDFFLNNLTTFIDNGLTEIAISDLPYDI--VQQEISQ 81 (219)
T ss_dssp HCSTTHHHHHHHSCHHHHHHHHHHTTSEEEEESCHH------HHHHHHHTHHHHHHTTCCEEEEEEEEHHH--HHHHHHH
T ss_pred hccccHHHHHhcCCHHHHHHHHhccCCceEEecCcc------hHHHHHHhhHHHHHCCceEEeHhhhhhhH--HHHHHHH
Confidence 456677775555444222 55555666554443 48999999999999999999984211000 0000011
Q ss_pred CCCCC-------------CCCCCHHHHHHHHHHHHHcCCEEE
Q 015125 79 LYSLN-------------SSYGSEHLLKALLHKMKQHKVRAM 107 (413)
Q Consensus 79 ~~~id-------------~~~Gt~~~~~~Lv~~~h~~Gi~Vi 107 (413)
|++.. -+.-....|+.|+++||++||+|+
T Consensus 82 Yl~~G~~S~~L~a~Lk~l~~~d~~gaf~~Li~~Ar~ngikI~ 123 (219)
T d2ebfx2 82 FLQGSNEWKTLDAMLFNLDKGDINGAFRKLLQSAKDNNIKFR 123 (219)
T ss_dssp HHTTCSCCHHHHHHHHHHTTTCSSCHHHHHHHHHHHTTCEEE
T ss_pred HHhcCcCCccHHHHHHHhhcccchhhHHHHHHHHHHCCcEEE
Confidence 11110 000112268899999999999998
|
| >d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus [TaxId: 5087]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endocellulase EngI species: Thermoascus aurantiacus [TaxId: 5087]
Probab=90.38 E-value=0.13 Score=46.03 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=38.8
Q ss_pred HhhhhhHHHcCCCEEEcCCCCC---CCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 46 ERKVPDISKSGFTSVWLPPATH---SFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~---~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+.+++||++|+|+|=|+ |.- .+...+ +.+++ ...+.++++|+.|.++||+||||+
T Consensus 34 ~~di~~l~~~G~N~VRlP-v~~~~~~~~~~~------~~~~~--~~~~~l~~~v~~a~~~gl~vIlD~ 92 (305)
T d1h1na_ 34 PNTIDTLISKGMNIFRVP-FMMERLVPNSMT------GSPDP--NYLADLIATVNAITQKGAYAVVDP 92 (305)
T ss_dssp HHHHHHHHHTTCCEEEEE-ECHHHHSCSSTT------SCCCH--HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCCEEEee-eeHHHhccCCCC------CccCH--HHHHHHHHHHHHHHhcCCeEEEec
Confidence 456889999999999873 321 001111 11221 226789999999999999999998
|
| >d1jaea1 b.71.1.1 (A:379-471) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Probab=90.17 E-value=0.077 Score=38.40 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=29.1
Q ss_pred EEecCCEEEEEECCEEEEEEcCCCC-------CCCCCCcEEeeeCC
Q 015125 368 LEAQSNLYSAIIGDKVCMKIGDGSW-------CPAGKEWTLATSGH 406 (413)
Q Consensus 368 ~~~~~~~~~~~r~~~~lv~lnn~~~-------~~~~~~~~~~~s~~ 406 (413)
+...++.++|.|+++..|+||+++. ..+.+.|++++||.
T Consensus 8 wdng~nqIAF~RG~kGFvAiN~~~~l~~t~qTgLPaG~YCDVisG~ 53 (93)
T d1jaea1 8 WSNDDNQIAFSRGSQGFVAFTNGGDLNQNLNTGLPAGTYCDVISGE 53 (93)
T ss_dssp EECSSSEEEEEETTTEEEEEESSSCEEEEEECCCCSEEEECTTTCC
T ss_pred EECCCcEEEEecCCCcEEEEeCCcccceeEecCCCCcceeEeeecc
Confidence 4455789999999999999998542 13457788877754
|
| >d2ebna_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Endo-beta-N-acetylglucosaminidase species: Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]
Probab=90.00 E-value=0.36 Score=42.45 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCH
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQH 168 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~ 168 (413)
.+.+.++|+.||++||||+|=+==+|.+. .+. .+ ++
T Consensus 66 ~~~~~~~i~~~q~~g~KvllsigG~~~~~--------------------------------------~~~---~~---~~ 101 (285)
T d2ebna_ 66 LTNRAKYLKPLQDKGIKVILSILGNHDRS--------------------------------------GIA---NL---ST 101 (285)
T ss_dssp HHTHHHHTHHHHHTTCEEEEEEECCSSSC--------------------------------------CTT---CB---CH
T ss_pred hhhHHHHHHHHHhCCCEEEEEeccCCCCc--------------------------------------ccc---cC---CH
Confidence 45678899999999999999882211110 011 11 56
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEeecc
Q 015125 169 FVRKDIIAWLRWLRNTVGFQDFRFDF 194 (413)
Q Consensus 169 ~vr~~l~~~~~~w~~~~gvDGfR~D~ 194 (413)
+-|+.+++.+...++++|.||+-+|-
T Consensus 102 ~~~~~F~~~~~~~~~~y~lDGiDiD~ 127 (285)
T d2ebna_ 102 ARAKAFAQELKNTCDLYNLDGVFFDD 127 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCcEEeccc
Confidence 77888888888888899999999995
|
| >d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Probab=89.24 E-value=0.003 Score=61.64 Aligned_cols=50 Identities=2% Similarity=-0.031 Sum_probs=45.4
Q ss_pred CCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCC
Q 015125 74 YLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG 123 (413)
Q Consensus 74 Y~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~ 123 (413)
|++.++..+.+.+|+.++++.++.++|.+|++|++|+|.||++..|.+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 138 (563)
T d2fhfa5 89 KVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNP 138 (563)
T ss_dssp GCCCTTSBHHHHHHHCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTTBC
T ss_pred cccccccccccccccccccchhhhhhhccccchhhhhhhcccccccchhh
Confidence 56677778889999999999999999999999999999999999998764
|
| >d1qbaa3 c.1.8.6 (A:338-780) Bacterial chitobiase (beta-N-acetylhexosaminidase) {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: Bacterial chitobiase (beta-N-acetylhexosaminidase) species: Serratia marcescens [TaxId: 615]
Probab=88.84 E-value=0.57 Score=43.86 Aligned_cols=76 Identities=8% Similarity=0.012 Sum_probs=50.5
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCC------CCCCC---------CCCCCCcccCCCCCCCC----------CCHHHHHHH
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPP------ATHSF---------APEGYLPQNLYSLNSSY----------GSEHLLKAL 95 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~P------i~~~~---------~~~gY~~~d~~~id~~~----------Gt~~~~~~L 95 (413)
..+.|.+.|+.++..++|.++|.= .++.+ +.+++.......+.|.+ =|.+|+|+|
T Consensus 16 ~~~~ik~~id~ma~~KlN~lH~HltD~qg~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~ei~ei 95 (443)
T d1qbaa3 16 KKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDI 95 (443)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECBCSSCBCBCCTTCTHHHHTTTEECSCTTCSSSBCCCTTSCSSCEECCBCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCceeeeCCcchhhhhcccccccccccccccccccCCCCCCCCccCHHHHHHH
Confidence 478899999999999999988731 01111 12222333222333322 258999999
Q ss_pred HHHHHHcCCEEEEEE-ccccCc
Q 015125 96 LHKMKQHKVRAMADI-VINHRV 116 (413)
Q Consensus 96 v~~~h~~Gi~VilD~-V~NH~~ 116 (413)
|+-|.++||+||-.+ ++.|+.
T Consensus 96 v~yA~~rgI~vIPEID~PGH~~ 117 (443)
T d1qbaa3 96 IKYAQARQIEVIPEIDMPAHAR 117 (443)
T ss_dssp HHHHHHTTCEEEEEEEESSSCH
T ss_pred HHHHHHcCCEEeeccchHHHHH
Confidence 999999999999555 366764
|
| >d1m7xa2 b.71.1.1 (A:623-728) 1,4-alpha-glucan branching enzyme {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: 1,4-alpha-glucan branching enzyme species: Escherichia coli [TaxId: 562]
Probab=88.61 E-value=0.46 Score=35.20 Aligned_cols=43 Identities=7% Similarity=0.088 Sum_probs=31.0
Q ss_pred eEEEEe---cCCEEEEEE----CCEEEEEEcCCCCC--------CCCCCcEEeeeCCc
Q 015125 365 IKILEA---QSNLYSAII----GDKVCMKIGDGSWC--------PAGKEWTLATSGHK 407 (413)
Q Consensus 365 ~~~~~~---~~~~~~~~r----~~~~lv~lnn~~~~--------~~~~~~~~~~s~~~ 407 (413)
|+.+.. ++++++|.| ++.+|+|+|+++.. |.++.|+++|+...
T Consensus 4 F~Wi~~~d~~~sV~af~R~~~~~~~~vvV~Nfsp~~~~~Y~igvp~~G~~~~ilNTD~ 61 (106)
T d1m7xa2 4 FEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHDYRFGINQPGKWREILNTDS 61 (106)
T ss_dssp EEEEEEEETTTTEEEEEEECTTCCEEEEEEECSSCCEEEECCBCSSCSEEEEEEETTS
T ss_pred CEEeeCCCCCCCEEEEEEeCCCCCEEEEEEeCCCCccCcEEcCCCCCCeEEEEEcCCc
Confidence 455533 457999998 35788899996632 56789999998653
|
| >d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase {Streptomyces plicatus [TaxId: 1922]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-N-acetylhexosaminidase species: Streptomyces plicatus [TaxId: 1922]
Probab=88.54 E-value=0.98 Score=40.91 Aligned_cols=125 Identities=8% Similarity=0.016 Sum_probs=72.2
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCC------CCCCCC-----C-CCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPA------THSFAP-----E-GYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi------~~~~~~-----~-gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
..+.|.+.+|.++...+|.++|.=- ++...+ . +|... -... ..+=|.+|+++||+-|.++||+||-
T Consensus 16 ~~~~i~~~id~ma~~K~N~lh~Hl~D~~~~r~e~~~~p~l~~~ga~~~~-~~~~-~~~yT~~di~~iv~ya~~rgI~viP 93 (356)
T d1jaka1 16 GVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEV-GGGP-GGYYTKAEYKEIVRYAASRHLEVVP 93 (356)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCT-TSSC-CCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEEecCCCcceeecCCchhhhccCcccc-CCCC-CCccCHHHHHHHHHHHHHcCCeEee
Confidence 4788899999999999998877421 111110 1 11100 0011 2233689999999999999999997
Q ss_pred EE-ccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhc
Q 015125 109 DI-VINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTV 185 (413)
Q Consensus 109 D~-V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~ 185 (413)
.+ ++.|+..-.. .| ++..... .... ...+.-.....||..+|++.+++.+++...++-|
T Consensus 94 Eid~PgH~~~~~~----~~-------pel~~~~----~~~~---~~~~~~~~~~~l~~~~~~t~~f~~~v~~E~~~lf 153 (356)
T d1jaka1 94 EIDMPGHTNAALA----SY-------AELNCDG----VAPP---LYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALT 153 (356)
T ss_dssp ECCCSSSCHHHHH----HC-------GGGSTTS----CCCC---CCCSCCCSCCCCCTTCHHHHHHHHHHHHHHHHTC
T ss_pred cCCCcchhHHHHH----hC-------ccccccC----CCCc---cccccCCCCcccccCchHHHHHHHHHHHHHHHhc
Confidence 77 4556543100 00 0110000 0000 0001112233588899999999999999988544
|
| >d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Putative alpha-L-fucosidase, catalytic domain domain: Putative alpha-L-fucosidase, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.40 E-value=1 Score=40.66 Aligned_cols=119 Identities=11% Similarity=-0.055 Sum_probs=72.7
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCC
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG 123 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~ 123 (413)
..+-+.-+|+.|+..|-|+-=+.-. .-+.=..++|..++... ..+-+++|+++|+++||++-+=+ |.+.
T Consensus 101 a~~Wv~~ak~aGaky~vlTaKHHDGF~Lw~S~~t~~n~~~~~~-~rDiv~el~~A~rk~Glk~G~Yy---S~~~------ 170 (350)
T d1hl9a2 101 PQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGP-KRDLVGDLAKAVREAGLRFGVYY---SGGL------ 170 (350)
T ss_dssp HHHHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTT-CSCHHHHHHHHHHHTTCEECEEE---CCSC------
T ss_pred HHHHHHHHHHcCCCEEEEEEEecCCcccCCCCCCCCCCcCCCC-CCchHHHHHHHHHhcCCceeEEe---cccc------
Confidence 3445667899999999877544321 11111234555555443 46789999999999999997722 2111
Q ss_pred CcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 124 GKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 124 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
+|+..... ... -......+...+...+++..-++.++..||.|++=+|..
T Consensus 171 -----------dw~~~~~~---~~~--------~~~~~~~~~~~~~y~~~~~~Ql~EL~~~Y~p~~~w~D~~ 220 (350)
T d1hl9a2 171 -----------DWRFTTEP---IRY--------PEDLSYIRPNTYEYADYAYKQVMELVDLYLPDVLWNDMG 220 (350)
T ss_dssp -----------CTTSCCSC---CCS--------GGGGGTCSCCSHHHHHHHHHHHHHHHHHHCCSCEEECSC
T ss_pred -----------ccccccCC---CCC--------cchhcccCccchHHHHHHHHHHHHHHhccCCceEEeccc
Confidence 12211000 000 000112233457888999999999999999999999975
|
| >d1g94a1 b.71.1.1 (A:355-448) Bacterial alpha-Amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Bacterial alpha-Amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=87.80 E-value=0.096 Score=37.96 Aligned_cols=39 Identities=18% Similarity=0.104 Sum_probs=29.5
Q ss_pred EEecCCEEEEEECCEEEEEEcCCCCC--------CCCCCcEEeeeCC
Q 015125 368 LEAQSNLYSAIIGDKVCMKIGDGSWC--------PAGKEWTLATSGH 406 (413)
Q Consensus 368 ~~~~~~~~~~~r~~~~lv~lnn~~~~--------~~~~~~~~~~s~~ 406 (413)
+..+++.++|.|+++..|+||+.... .+.+.|++++||.
T Consensus 8 wdng~nqIAF~RG~kGFvAiN~~~~~~~~t~~TgLPaG~YCDVisG~ 54 (94)
T d1g94a1 8 WDNTNNQISFGRGSSGHMAINKEDSTLTATVQTDMASGQYCNVLKGE 54 (94)
T ss_dssp EECSSSEEEEECGGGEEEEEECSSSCBCCEEECCSCSEEEECTTTCC
T ss_pred EECCCcEEEEecCCCcEEEEeCCCCceeEEEEccCCCceeeEEeecc
Confidence 44556899999999999999995422 3557888887763
|
| >d1yhta1 c.1.8.6 (A:16-359) Dispersin B, DspB {Actinobacillus actinomycetemcomitans [TaxId: 714]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: Dispersin B, DspB species: Actinobacillus actinomycetemcomitans [TaxId: 714]
Probab=87.59 E-value=0.49 Score=42.77 Aligned_cols=125 Identities=13% Similarity=-0.051 Sum_probs=69.3
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcC-----------CCCCCCC----CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLP-----------PATHSFA----PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR 105 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~-----------Pi~~~~~----~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~ 105 (413)
..+.|.+.|+.++.+++|.++|. |.++.-. ..+..+..--.....+=|.+|+++||+-|+++||+
T Consensus 16 ~~~~ik~~id~ma~~K~N~lhlHltDdq~~~le~~~~p~l~~~~~~~~~~~~~~~~~~~~~yt~~e~~~lv~yA~~rgI~ 95 (344)
T d1yhta1 16 SPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKDGIYINPYTGKPFLSYRQLDDIKAYAKAKGIE 95 (344)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECBSSSCBCBCBTTTTBCGGGSEECTTSCEECTTTCCEEBCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeecCCCceecccCCchhhhhccccCCCCCCCCCCCCcccCHHHHHHHHHHHHHcCCE
Confidence 47889999999999999999883 1111100 01100000000011122799999999999999999
Q ss_pred EEEEE-ccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhh
Q 015125 106 AMADI-VINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNT 184 (413)
Q Consensus 106 VilD~-V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~ 184 (413)
||-.+ ++.|++.-... + + .... ....... ........||..+|++.+++.++++..++-
T Consensus 96 viPeiD~PGH~~~~~~~----~-p------~~~~---~~~~~~~------~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~ 155 (344)
T d1yhta1 96 LIPELDSPNHMTAIFKL----V-Q------KDRG---VKYLQGL------KSRQVDDEIDITNADSITFMQSLMSEVIDI 155 (344)
T ss_dssp EEEEEEESSSCHHHHHH----H-H------HHHC---HHHHHHH------BCSSCTTSBCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeccchhhHHHHHHHh----c-h------hhcC---CCCccCC------CCCCCCCcccCCCchhHHHHHHHHHHHHHh
Confidence 99444 45665431000 0 0 0000 0000000 000112358889999999999988887754
Q ss_pred c
Q 015125 185 V 185 (413)
Q Consensus 185 ~ 185 (413)
|
T Consensus 156 F 156 (344)
T d1yhta1 156 F 156 (344)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >d1eoka_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F3 [TaxId: 238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Endo-beta-N-acetylglucosaminidase species: Flavobacterium meningosepticum, endoglycosidase F3 [TaxId: 238]
Probab=86.96 E-value=0.58 Score=40.55 Aligned_cols=71 Identities=10% Similarity=0.120 Sum_probs=49.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCC
Q 015125 81 SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGV 160 (413)
Q Consensus 81 ~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (413)
.+...+-+.++|+.-|++||++|++|++-+= ... + +.... .
T Consensus 50 ~~~~~~~~~~~~~~~i~~~q~~g~kVllSiG-----G~~----~-----------~~~~~-------------------~ 90 (282)
T d1eoka_ 50 GMMGSFKSYKDLDTQIRSLQSRGIKVLQNID-----DDV----S-----------WQSSK-------------------P 90 (282)
T ss_dssp GGGTTCSSHHHHHHHHHHHHTTTCEEEEEEE-----CCG----G-----------GGSSS-------------------G
T ss_pred ceeecccchhHHHHHHHHHhhcCceEEEEEe-----cCC----C-----------CCccC-------------------C
Confidence 4455666789999999999999999999861 110 0 00000 0
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecc
Q 015125 161 PNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (413)
Q Consensus 161 ~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~ 194 (413)
+ ......+++...+...++++|+|||=+|-
T Consensus 91 ~----~~~~~~~~~~~~~~~~i~~yglDGiDiD~ 120 (282)
T d1eoka_ 91 G----GFASAAAYGDAIKSIVIDKWKLDGISLDI 120 (282)
T ss_dssp G----GSSSHHHHHHHHHHHHTTTTCCCEEEEEC
T ss_pred c----cHHHHHHHHHHHHHHHHHHhCCCceeecc
Confidence 0 01234677888888899999999999996
|
| >d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Melibiase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.87 E-value=2.5 Score=36.47 Aligned_cols=33 Identities=3% Similarity=0.090 Sum_probs=25.9
Q ss_pred hcCCCeeEEecCcccCCchhHHHHH--HHHHHHHH
Q 015125 323 LMHPGIPSVFYDHFYDWGDSIHNQI--VKLMDVRR 355 (413)
Q Consensus 323 l~~pGiP~Iy~G~E~gw~~~l~~~i--~~L~~lR~ 355 (413)
..+-|-|++..++--.++.+.++.+ ++||+|.+
T Consensus 256 w~~~~spL~i~~dl~~~~~~~l~ll~N~e~IAinq 290 (292)
T d1r46a2 256 WAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQ 290 (292)
T ss_dssp HHHTTCCEEECSCTTSCCHHHHHHHHCHHHHHHHT
T ss_pred HHHHhCchhccCCcccCCHHHHHHhcCHHHHhcCC
Confidence 3455789988888777788888888 89998865
|
| >d1ua7a1 b.71.1.1 (A:348-425) Bacterial alpha-Amylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Bacterial alpha-Amylase species: Bacillus subtilis [TaxId: 1423]
Probab=85.61 E-value=0.25 Score=34.47 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=29.3
Q ss_pred CCEEEEEECCEEEEEEcCCCC--------CCCCCCcEEeeeCCceEE
Q 015125 372 SNLYSAIIGDKVCMKIGDGSW--------CPAGKEWTLATSGHKYAV 410 (413)
Q Consensus 372 ~~~~~~~r~~~~lv~lnn~~~--------~~~~~~~~~~~s~~~~~~ 410 (413)
+.++.|.|+++.+|++|+... ..+.+.++++++|..+.|
T Consensus 12 nqi~~~~RG~kGfvaiN~~~~~~~~~~~T~Lp~GtYcDvisg~~~tV 58 (78)
T d1ua7a1 12 NQIFMNQRGSHGVVLANAGSSSVSINTATKLPDGRYDNKAGAGSFQV 58 (78)
T ss_dssp TTEEEEEETTTEEEEEECSSSCEEEEEECCSCSEEEECTTSSCEEEE
T ss_pred eEEEEEecCCcEEEEEeCCCCcEEeeEEccCCCcceeEEecCCEEEE
Confidence 456777999999999998432 235688888888876665
|
| >d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial beta-amylase species: Bacillus cereus [TaxId: 1396]
Probab=84.03 E-value=0.7 Score=42.55 Aligned_cols=65 Identities=11% Similarity=0.191 Sum_probs=50.0
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCC----CCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPAT----HSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~----~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
.+.+.+.+.|..||++||++|-+ +++ |..++.-| ..+.+++|++-+++.|+||.+=+.++.+
T Consensus 26 ~~~~~~~~~L~~LK~aGV~gV~v-dVwWGivE~~~Pg~Y-------------dws~yd~l~~mv~~~GLKi~vvmsfH~c 91 (417)
T d1vema2 26 TNWETFENDLRWAKQNGFYAITV-DFWWGDMEKNGDQQF-------------DFSYAQRFAQSVKNAGMKMIPIISTHQC 91 (417)
T ss_dssp SCHHHHHHHHHHHHHTTEEEEEE-EEEHHHHTCSSTTCC-------------CCHHHHHHHHHHHHTTCEEEEEEECSCB
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE-eeeeeeeecCCCCcc-------------CcHHHHHHHHHHHHcCCeEEEEEEeccc
Confidence 35899999999999999999977 554 22111122 3577999999999999998888888776
Q ss_pred cCC
Q 015125 116 VGT 118 (413)
Q Consensus 116 ~~~ 118 (413)
+..
T Consensus 92 Ggn 94 (417)
T d1vema2 92 GGN 94 (417)
T ss_dssp SSS
T ss_pred CCC
Confidence 663
|
| >d1h3ga2 b.71.1.1 (A:518-600) Cyclomaltodextrinase {Flavobacterium sp. 92 [TaxId: 197856]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Cyclomaltodextrinase species: Flavobacterium sp. 92 [TaxId: 197856]
Probab=83.86 E-value=0.45 Score=33.57 Aligned_cols=41 Identities=7% Similarity=0.079 Sum_probs=28.7
Q ss_pred ecCCEEEEEE---CCEEEEEEcCCCCC------------CCCCCcEEeeeCCceEE
Q 015125 370 AQSNLYSAII---GDKVCMKIGDGSWC------------PAGKEWTLATSGHKYAV 410 (413)
Q Consensus 370 ~~~~~~~~~r---~~~~lv~lnn~~~~------------~~~~~~~~~~s~~~~~~ 410 (413)
..+++++|.| ++.++|++|+++.. +.....++++||..+.+
T Consensus 7 P~~gvYvyfR~~~~~~VmVi~N~n~~~~~ldl~Rf~E~l~~~~~~~dVlsgk~i~l 62 (83)
T d1h3ga2 7 PEENTWVYFRYNKDKRIMVAMNNNDKPMTLPTARFQEMLKGAPSGVDFLSGKTVGL 62 (83)
T ss_dssp CBTTEEEEEEECSSEEEEEEEECSSSCEEEEGGGGHHHHTTCCEEEETTTCCEEEC
T ss_pred cCCCEEEEEEEeCCCEEEEEECCCCccEEECHHHHHHHhcCCCeEEECCCCCEEEC
Confidence 3578999988 45677888886532 23467788888877753
|
| >d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Glycosyl hydrolases family 35 catalytic domain domain: Beta-galactosidase LacA, N-terminal domain species: Penicillium sp. [TaxId: 5081]
Probab=83.64 E-value=0.24 Score=45.14 Aligned_cols=56 Identities=14% Similarity=0.082 Sum_probs=38.3
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCC--CCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 45 LERKVPDISKSGFTSVWLPPATH--SFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~--~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
..+.|.-+|+||+|+|-+.=... .+....|+ +....++.++++.|+++||+||+..
T Consensus 38 w~~~l~~mk~~G~n~vr~~~~W~~~ep~~g~~d----------f~~~~~l~~~l~~a~~~Gl~vil~~ 95 (354)
T d1tg7a5 38 YIDIFEKVKALGFNCVSFYVDWALLEGNPGHYS----------AEGIFDLQPFFDAAKEAGIYLLARP 95 (354)
T ss_dssp HHHHHHHHHTTTCCEEEEECCHHHHCSBTTBCC----------CCGGGCSHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEecchhccCCCCCccc----------ccchhhHHHHHHHHHHcCCEEEEcC
Confidence 34678889999999998621111 01112221 2345678999999999999999866
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=83.57 E-value=0.45 Score=46.94 Aligned_cols=24 Identities=8% Similarity=-0.028 Sum_probs=18.9
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcC
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLP 63 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~ 63 (413)
|+.+++.+.++.+++.|+..|.=.
T Consensus 63 Gt~edf~~LV~aaH~~Gm~VIlDi 86 (653)
T d1iv8a2 63 GGEKEYRRLIETAHTIGLGIIQDI 86 (653)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 788888888888888888776533
|
| >d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Melibiase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=82.18 E-value=5.4 Score=33.99 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=37.5
Q ss_pred cHHHHHhhhhhH-----HHcCCCEEEcCCCCCCCCCCCCCccc-----CCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEE
Q 015125 41 WWRNLERKVPDI-----SKSGFTSVWLPPATHSFAPEGYLPQN-----LYSLN-SSYGSEHLLKALLHKMKQHKVRAMAD 109 (413)
Q Consensus 41 ~~~gi~~~L~yL-----k~lGv~~I~L~Pi~~~~~~~gY~~~d-----~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD 109 (413)
+-+.|.+.++.| +.+|++.|.| +.|+.... ...++ .+|. ..++.|++.+|++||++-+=
T Consensus 24 ~e~~~~~~~~~~~~~gl~~~G~~~~~i--------DdGW~~~~~d~~g~~~~~~~~fP--~Gl~~~~~~~~~~G~~~Glw 93 (273)
T d1uasa2 24 NEQIIRETADALVNTGLAKLGYQYVNI--------DDCWAEYSRDSQGNFVPNRQTFP--SGIKALADYVHAKGLKLGIY 93 (273)
T ss_dssp CHHHHHHHHHHHHHTSHHHHTCCEEEC--------CSSCBCSSCCTTSCCCBCTTTCT--TCHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHcCchhhCCeEEEE--------cCCcCCCCCCCCCCcccCccccC--CChHHHHHHHHhCCCeEEEe
Confidence 566777777775 4588888865 33332211 01222 2332 35999999999999999764
Q ss_pred E
Q 015125 110 I 110 (413)
Q Consensus 110 ~ 110 (413)
+
T Consensus 94 ~ 94 (273)
T d1uasa2 94 S 94 (273)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-hexosaminidase A species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.48 E-value=1.7 Score=39.22 Aligned_cols=121 Identities=8% Similarity=0.057 Sum_probs=71.8
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccC--------CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE-
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNL--------YSLNSSYGSEHLLKALLHKMKQHKVRAMADI- 110 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~--------~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~- 110 (413)
..+.|.+.|+.++..++|.++|.= +. ..+++.+..| +.....+=|.+|+++||+-|+++||+||-.+
T Consensus 16 ~~~~lk~~id~ma~~K~N~lhlHl---tD~~~~r~e~~~~p~l~~~ga~~~~~~~yT~~d~~elv~yA~~rgI~vIPEiD 92 (362)
T d2gjxa1 16 PLSSILDTLDVMAYNKLNVFHWHL---VDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFD 92 (362)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEC---CCSSCCCBCCSSCTHHHHHHSSCTTTSCBCHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEE---EcCCCceeccCCCchhhhcCCcCCCCCccCHHHHHHHHHHHHHcCCEEEeccc
Confidence 478899999999999999998721 11 1122222211 1111233389999999999999999999776
Q ss_pred ccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhc
Q 015125 111 VINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTV 185 (413)
Q Consensus 111 V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~ 185 (413)
++.|+..-... | ++.. +...+... . ......+|..++++.+++.+++...++-|
T Consensus 93 ~PGH~~a~~~~----~-------p~l~----~~~~~~~~--~----~~~~~~l~~~~~~t~~f~~~v~~E~~~lF 146 (362)
T d2gjxa1 93 TPGHTLSWGPG----I-------PGLL----TPCYSGSE--P----SGTFGPVNPSLNNTYEFMSTFFLEVSSVF 146 (362)
T ss_dssp CSSSCTTTTTT----S-------TTCE----EEEESSSS--E----EEEEEEECTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccchhHHHHHh----C-------hhhc----CcccCCCC--C----CCcccccCCCcHHHHHHHHHHHHHHHHhh
Confidence 35665442110 0 0000 00000000 0 00112477888999999999988877644
|
| >d1jz8a5 c.1.8.3 (A:334-625) beta-Galactosidase, domain 3 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: beta-Galactosidase, domain 3 species: Escherichia coli [TaxId: 562]
Probab=81.06 E-value=5.8 Score=33.82 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=47.9
Q ss_pred CCceeEEEeeecCC--CCCc---cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 015125 23 NGREILFQGFNWES--CKHD---WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLH 97 (413)
Q Consensus 23 ~~~~~i~~~f~~~~--~~~g---~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~ 97 (413)
+|.++.+++.+|-- +..| +-+.+...+..+|+||+|+|=+. +| |. + .++.+
T Consensus 12 NGk~~~l~G~~~~~~~~~~g~~~~~~~~~~di~l~k~~G~N~iR~~---------~~-p~----------~----~~~~~ 67 (292)
T d1jz8a5 12 NGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCS---------HY-PN----------H----PLWYT 67 (292)
T ss_dssp TTEECCEEEEECCCCBTTTBTCCCHHHHHHHHHHHHHTTCCEEECT---------TS-CC----------C----HHHHH
T ss_pred CCEEEEEeeeEccCCCCccCCCCCHHHHHHHHHHHHhcCCCEEEec---------CC-CC----------h----HHHHH
Confidence 56677778777721 1112 67888999999999999999532 11 11 1 35678
Q ss_pred HHHHcCCEEEEEEcccc
Q 015125 98 KMKQHKVRAMADIVINH 114 (413)
Q Consensus 98 ~~h~~Gi~VilD~V~NH 114 (413)
.|.+.||-|+.|+....
T Consensus 68 ~~D~~Gilv~~e~~~~~ 84 (292)
T d1jz8a5 68 LCDRYGLYVVDEANIET 84 (292)
T ss_dssp HHHHHTCEEEEECSCBC
T ss_pred HHhhcCCeEEeeeeecc
Confidence 89999999999986553
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=80.37 E-value=0.043 Score=53.38 Aligned_cols=41 Identities=10% Similarity=-0.071 Sum_probs=36.5
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc
Q 015125 158 HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS 199 (413)
Q Consensus 158 ~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~ 199 (413)
..++++|..+|++++.+.+.+.+|+ +++|||||+|++..+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgfr~d~~~~~~ 305 (572)
T d1gjwa2 265 KFTLPPNLIDPQKWEKIKREEGNIL-ELIVKEFGIITPPGFS 305 (572)
T ss_dssp TBCCCHHHHCHHHHHHHHTCSSCHH-HHHHHHHSEECCCBCC
T ss_pred ccCCCccccCHHHHHHHHHHhhhHH-hcccceeecccccccc
Confidence 3477889999999999999999998 8999999999997764
|