Citrus Sinensis ID: 015145

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
Protein Sequence
MLNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA
Secondary Structure (PSIPRED)
ccccccEEEEEEccccccccccccccccccccccccccccccccccEEEEEEEccEEEEEEEEEEEEEEccEEEcccEEEEEEEEcccccccccccEEEccccccccccccccHHHHHHHcccccccEEEEEEEcccccccccEEEEcccccccccccEEEEEcEEEEEEEEEEccEEEcccEEEEEcccEEEEEccccccccccHHHHHHHHHHcccccccEEcEEEEEEcccccEEEEEEcccccccEEccccEEEccccEEEEEcEEEEEEEcccccccccccccccEEEEEccccccccccHHHHHHHHHHHHcccccccccEEEEcccccccccEEEEEccEEEEEcccccEEEEccccccEEEEEEEEccccccccccEEEccccccccEEEEEccccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEccccccEcccHHHHHHcccccccccccEEEEEEEEEEEEccEEEEEEEEEEEEEEccEEEEEEEEEEEEEccccHHHHccccEEEEcccHHHcHHHcccHHHHHHHcccccccEEEEEEcccccccccEEEEEccccHHHEEEEEEEEEccEEccEEEEEEEEEEccccEEccccEEEEEEccccccEEEEHHHHHHHHHHHccEEcccccEEEEHHcccHHHHHHHcccccccccccEEEEEcccccEEEcccEEEEEEccccccccccHHccccEEEEEcccEccccccHHHHHHHHHHHHccEEcccccEEccccHHHHcccEEEEEccEEEEEcHHHHEEEEEEccEEEEEEcEEEccccccccccEEEcHHHHccEEEEEEccccEEEEEEEc
Coil and Loop (DISEMBL)
MLNTLERLVLALPhkisvsylipavpisgfhlqsaislfpaisirgksceinygsgsisgffsqdnvevgdvVVKDQVFIEATREGSLTFLLARFDGiiglgfreiavgdavpvwdnmveqgLVSEEVFSFwlnrdpdaeeggeivfggvdpkhfkgkhtyvpvtkkgywqfelgdilignqstgvcegGCAAIVDsgtsllagptpvvteinhaiggegvVSAECKLVVSQYGDLIWDLLVsgllpekvCQQIGlcafngaeyvsTGIKTVVEKenvsagdsaVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCdslpnpmgesiidcdriptmpnvsftigdkifnlspEQYILKTGEGIAEVCISgfmafdlppprgplwilgdvfMGVYhtvfdsgklrigfaeaa
Flexible Loop (DISEMBL)
MLNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVfggvdpkhfkGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA
Low Complexity Region (SEG)
MLNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQdnvevgdvvvkdqvFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA
Disordered region (IsUnstruct)
****LERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGF****
Disordered Region (DISOPRED)
*LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA*
Disordered Region (DISEMBL)
MLNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA
Disordered Region (DISPRO)
*L*TLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	412	2.2.26 [Sep-21-2011]
O04057	513	Aspartic proteinase OS=Cu	N/A	no	0.929	0.746	0.668	1e-151
O65390	506	Aspartic proteinase A1 OS	yes	no	0.893	0.727	0.654	1e-149
P42211	496	Aspartic proteinase OS=Or	yes	no	0.885	0.735	0.648	1e-148
Q42456	509	Aspartic proteinase oryza	no	no	0.922	0.746	0.640	1e-148
Q8VYL3	513	Aspartic proteinase A2 OS	no	no	0.927	0.744	0.625	1e-145
P40782	473	Cyprosin (Fragment) OS=Cy	N/A	no	0.929	0.809	0.604	1e-140
P42210	508	Phytepsin OS=Hordeum vulg	N/A	no	0.893	0.724	0.652	1e-140
Q9XEC4	508	Aspartic proteinase A3 OS	no	no	0.929	0.753	0.584	1e-137
Q9XFX4	506	Procardosin-B OS=Cynara c	N/A	no	0.890	0.725	0.585	1e-134
Q9XFX3	504	Procardosin-A OS=Cynara c	N/A	no	0.866	0.708	0.580	1e-121

>sp|O04057|ASPR_CUCPE Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1

 Score =  535 bits (1378), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 258/386 (66%), Positives = 315/386 (81%), Gaps = 3/386 (0%)

Query: 30  FHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLT 89
           FH +   S   +    G S  I YG+G++SGFFS DNV+VGD+VVK+QVFIEATRE SLT
Sbjct: 128 FHARYKSSRSSSYKKNGTSASIRYGTGAVSGFFSYDNVKVGDLVVKEQVFIEATREPSLT 187

Query: 90  FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGG 149
           FL+A+FDG++GLGF+EIAVG+AVPVW NMVEQGLV E VFSFWLNR+ + EEGGEIVFGG
Sbjct: 188 FLVAKFDGLLGLGFQEIAVGNAVPVWYNMVEQGLVKEPVFSFWLNRNVEEEEGGEIVFGG 247

Query: 150 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 209
           VDPKH++GKHTYVPVT+KGYWQF++GD+LI  + TG C+GGC+AI DSGTSLLAGPTPV+
Sbjct: 248 VDPKHYRGKHTYVPVTQKGYWQFDMGDVLIDGEPTGFCDGGCSAIADSGTSLLAGPTPVI 307

Query: 210 TEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGI 269
           T INHAIG +GVVS +CK VV+QYG  I DLL+S   P+K+C QI LC F+G   VS GI
Sbjct: 308 TMINHAIGAKGVVSQQCKAVVAQYGQTIMDLLLSEADPKKICSQINLCTFDGTRGVSMGI 367

Query: 270 KTVVEKENVSAGDS---AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGE 326
           ++VV++    + DS    +CS CEM VVW+QNQL+Q QTKE++++YINELCD +P+PMG+
Sbjct: 368 ESVVDENAGKSSDSLHDGMCSVCEMTVVWMQNQLRQNQTKERIINYINELCDRMPSPMGQ 427

Query: 327 SIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWI 386
           S +DC ++ +MP VSFTIG KIF+L+PE+YILK GEG    CISGF AFD+PPPRGPLWI
Sbjct: 428 SAVDCGQLSSMPTVSFTIGGKIFDLAPEEYILKVGEGPVAQCISGFTAFDIPPPRGPLWI 487

Query: 387 LGDVFMGVYHTVFDSGKLRIGFAEAA 412
           LGDVFMG YHTVFD GKLR+G AEAA
Sbjct: 488 LGDVFMGRYHTVFDFGKLRVGSAEAA 513

Involved in the breakdown of propeptides of storage proteins in protein-storage vacuoles.
Cucurbita pepo (taxid: 3663)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -

>sp|O65390|APA1_ARATH Aspartic proteinase A1 OS=Arabidopsis thaliana GN=APA1 PE=1 SV=1

 Score =  528 bits (1359), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 243/371 (65%), Positives = 300/371 (80%), Gaps = 3/371 (0%)

Query: 45  RGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
            GK+  I+YG+G+I+GFFS D V VGD+VVKDQ FIEAT+E  +TF++A+FDGI+GLGF+
Sbjct: 136 NGKAAAIHYGTGAIAGFFSNDAVTVGDLVVKDQEFIEATKEPGITFVVAKFDGILGLGFQ 195

Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV 164
           EI+VG A PVW NM++QGL+ E VFSFWLNR+ D EEGGE+VFGGVDP HFKGKHTYVPV
Sbjct: 196 EISVGKAAPVWYNMLKQGLIKEPVFSFWLNRNADEEEGGELVFGGVDPNHFKGKHTYVPV 255

Query: 165 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSA 224
           T+KGYWQF++GD+LIG   TG CE GC+AI DSGTSLLAGPT ++T INHAIG  GVVS 
Sbjct: 256 TQKGYWQFDMGDVLIGGAPTGFCESGCSAIADSGTSLLAGPTTIITMINHAIGAAGVVSQ 315

Query: 225 ECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGD-- 282
           +CK VV QYG  I DLL+S   P+K+C QIGLC F+G   VS GI++VV+KEN    +  
Sbjct: 316 QCKTVVDQYGQTILDLLLSETQPKKICSQIGLCTFDGTRGVSMGIESVVDKENAKLSNGV 375

Query: 283 -SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVS 341
             A CSACEMAVVW+Q+QL+Q  T+E++L+Y+NELC+ LP+PMGES +DC ++ TMP VS
Sbjct: 376 GDAACSACEMAVVWIQSQLRQNMTQERILNYVNELCERLPSPMGESAVDCAQLSTMPTVS 435

Query: 342 FTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDS 401
            TIG K+F+L+PE+Y+LK GEG    CISGF+A D+ PPRGPLWILGDVFMG YHTVFD 
Sbjct: 436 LTIGGKVFDLAPEEYVLKVGEGPVAQCISGFIALDVAPPRGPLWILGDVFMGKYHTVFDF 495

Query: 402 GKLRIGFAEAA 412
           G  ++GFAEAA
Sbjct: 496 GNEQVGFAEAA 506

Involved in the breakdown of propeptides of storage proteins in protein-storage vacuoles (By similarity). Possesses aspartic protease activity in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|P42211|ASPRX_ORYSJ Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2

 Score =  525 bits (1353), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 238/367 (64%), Positives = 305/367 (83%), Gaps = 2/367 (0%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G++C+I YGSG+ISGFFS+DNV VGD+VVK+Q FIEATRE S+TF++ +FDGI+GLG+ E
Sbjct: 132 GETCKITYGSGAISGFFSKDNVLVGDLVVKNQKFIEATRETSVTFIIGKFDGILGLGYPE 191

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           I+VG A P+W +M EQ L++++VFSFWLNRDPDA  GGE+VFGG+DPKH+KG HTYVPV+
Sbjct: 192 ISVGKAPPIWQSMQEQELLADDVFSFWLNRDPDASSGGELVFGGMDPKHYKGDHTYVPVS 251

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 225
           +KGYWQF +GD+LI   STG C  GCAAIVDSGTSLLAGPT +V ++NHAIG EG++S E
Sbjct: 252 RKGYWQFNMGDLLIDGHSTGFCAKGCAAIVDSGTSLLAGPTAIVAQVNHAIGAEGIISTE 311

Query: 226 CKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAV 285
           CK VVS+YG++I +LL++   P+KVC Q+GLC F+G   VS GI++VV+KEN+  G  A+
Sbjct: 312 CKEVVSEYGEMILNLLIAQTDPQKVCSQVGLCMFDGKRSVSNGIESVVDKENL--GSDAM 369

Query: 286 CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG 345
           CS CEMAVVW++NQL++ +TKE +L+Y N+LC+ LP+P GES + C +I  MPN++FTI 
Sbjct: 370 CSVCEMAVVWIENQLRENKTKELILNYANQLCERLPSPNGESTVSCHQISKMPNLAFTIA 429

Query: 346 DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLR 405
           +K F L+PEQYI+K  +G   VCISGFMAFD+PPPRGPLWILGDVFMG YHTVFD GK R
Sbjct: 430 NKTFILTPEQYIVKLEQGGQTVCISGFMAFDIPPPRGPLWILGDVFMGAYHTVFDFGKDR 489

Query: 406 IGFAEAA 412
           IGFA++A
Sbjct: 490 IGFAKSA 496

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q42456|ASPR1_ORYSJ Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2

 Score =  525 bits (1351), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 249/389 (64%), Positives = 301/389 (77%), Gaps = 9/389 (2%)

Query: 30  FHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLT 89
           FH +            GK   I YG+GSI+GFFS+D+V VGD+VVKDQ FIEAT+E  LT
Sbjct: 124 FHSRYKSGQSSTYQKNGKPAAIQYGTGSIAGFFSEDSVTVGDLVVKDQEFIEATKEPGLT 183

Query: 90  FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGG 149
           F++A+FDGI+GLGF+EI+VGDAVPVW  MVEQGLVSE VFSFW NR  D  EGGEIVFGG
Sbjct: 184 FMVAKFDGILGLGFQEISVGDAVPVWYKMVEQGLVSEPVFSFWFNRHSDEGEGGEIVFGG 243

Query: 150 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 209
           +DP H+KG HTYVPV++KGYWQFE+GD+LIG ++TG C  GC+AI DSGTSLLAGPT ++
Sbjct: 244 MDPSHYKGNHTYVPVSQKGYWQFEMGDVLIGGKTTGFCASGCSAIADSGTSLLAGPTAII 303

Query: 210 TEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGI 269
           TEIN  IG  GVVS ECK VVSQYG  I DLL++   P K+C Q+GLC F+G   VS GI
Sbjct: 304 TEINEKIGATGVVSQECKTVVSQYGQQILDLLLAETQPSKICSQVGLCTFDGKHGVSAGI 363

Query: 270 KTVVEKENVSAGDS------AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNP 323
           K+VV+ E   AG+S       +C+ACEMAVVW+QNQL Q +T++ +L+YIN+LCD LP+P
Sbjct: 364 KSVVDDE---AGESNGLQSGPMCNACEMAVVWMQNQLAQNKTQDLILNYINQLCDKLPSP 420

Query: 324 MGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGP 383
           MGES +DC  + +MP +SFTIG K F L PE+YILK GEG A  CISGF A D+PPPRGP
Sbjct: 421 MGESSVDCGSLASMPEISFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGP 480

Query: 384 LWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
           LWILGDVFMG YHTVFD GK+R+GFA++A
Sbjct: 481 LWILGDVFMGAYHTVFDYGKMRVGFAKSA 509

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q8VYL3|APA2_ARATH Aspartic proteinase A2 OS=Arabidopsis thaliana GN=APA2 PE=1 SV=1

 Score =  516 bits (1330), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 241/385 (62%), Positives = 299/385 (77%), Gaps = 3/385 (0%)

Query: 30  FHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLT 89
           FH +   S        GK   I+YGSGSISGFFS D V VGD+VVKDQ FIE T E  LT
Sbjct: 128 FHAKYKSSRSSTYKKSGKRAAIHYGSGSISGFFSYDAVTVGDLVVKDQEFIETTSEPGLT 187

Query: 90  FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGG 149
           FL+A+FDG++GLGF+EIAVG+A PVW NM++QGL+   VFSFWLNRDP +EEGGEIVFGG
Sbjct: 188 FLVAKFDGLLGLGFQEIAVGNATPVWYNMLKQGLIKRPVFSFWLNRDPKSEEGGEIVFGG 247

Query: 150 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 209
           VDPKHF+G+HT+VPVT++GYWQF++G++LI  +STG C  GC+AI DSGTSLLAGPT VV
Sbjct: 248 VDPKHFRGEHTFVPVTQRGYWQFDMGEVLIAGESTGYCGSGCSAIADSGTSLLAGPTAVV 307

Query: 210 TEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGI 269
             IN AIG  GVVS +CK VV QYG  I DLL++   P+K+C QIGLCA++G   VS GI
Sbjct: 308 AMINKAIGASGVVSQQCKTVVDQYGQTILDLLLAETQPKKICSQIGLCAYDGTHGVSMGI 367

Query: 270 KTVVEKENVSAGD---SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGE 326
           ++VV+KEN  +      A C ACEMAVVW+Q+QL+Q  T+E++++YINE+C+ +P+P GE
Sbjct: 368 ESVVDKENTRSSSGLRDAGCPACEMAVVWIQSQLRQNMTQERIVNYINEICERMPSPNGE 427

Query: 327 SIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWI 386
           S +DC ++  MP VSFTIG K+F+L+PE+Y+LK GEG    CISGF A D+PPPRGPLWI
Sbjct: 428 SAVDCSQLSKMPTVSFTIGGKVFDLAPEEYVLKIGEGPVAQCISGFTALDIPPPRGPLWI 487

Query: 387 LGDVFMGVYHTVFDSGKLRIGFAEA 411
           LGDVFMG YHTVFD G  ++GFAEA
Sbjct: 488 LGDVFMGKYHTVFDFGNEQVGFAEA 512

Involved in the breakdown of propeptides of storage proteins in protein-storage vacuoles.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|P40782|CYPR1_CYNCA Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2

 Score =  500 bits (1287), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 232/384 (60%), Positives = 299/384 (77%), Gaps = 1/384 (0%)

Query: 30  FHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLT 89
           FH +   +        GKS  I YG+GSISGFFSQD+V++GD++VK+Q FIEAT+E  +T
Sbjct: 90  FHSKYRSTDSTTYKKNGKSAAIQYGTGSISGFFSQDSVKLGDLLVKEQDFIEATKEPGIT 149

Query: 90  FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGG 149
           FL A+FDGI+GLGF+EI+VGDAVPVW  M+ QGLV E VFSFWLNR+ D +EGGE+VFGG
Sbjct: 150 FLAAKFDGILGLGFQEISVGDAVPVWYTMLNQGLVQEPVFSFWLNRNADEQEGGELVFGG 209

Query: 150 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 209
           VDP HFKG+HTYVPVT+KGYWQFE+GD+LIG+++TG C  GCAAI DSGTSLLAG T +V
Sbjct: 210 VDPNHFKGEHTYVPVTQKGYWQFEMGDVLIGDKTTGFCASGCAAIADSGTSLLAGTTTIV 269

Query: 210 TEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGI 269
           T+IN AIG  GV+S +CK +V QYG  + ++L+S   PEK+C Q+ LC+F+G+   S  I
Sbjct: 270 TQINQAIGAAGVMSQQCKSLVDQYGKSMIEMLLSEEQPEKICSQMKLCSFDGSHDTSMII 329

Query: 270 KTVVEK-ENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESI 328
           ++VV+K +  S+G    C  C   VVW+QNQ++Q +T+E +++Y+++LC+ LP+PMGES 
Sbjct: 330 ESVVDKSKGKSSGLPMRCVPCARWVVWMQNQIRQNETEENIINYVDKLCERLPSPMGESA 389

Query: 329 IDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILG 388
           +DC  + +MPN++FT+G K FNLSPEQY+LK GEG    CISGF A D+ PP GPLWILG
Sbjct: 390 VDCSSLSSMPNIAFTVGGKTFNLSPEQYVLKVGEGATAQCISGFTAMDVAPPHGPLWILG 449

Query: 389 DVFMGVYHTVFDSGKLRIGFAEAA 412
           DVFMG YHTVFD G LR+GFAEAA
Sbjct: 450 DVFMGQYHTVFDYGNLRVGFAEAA 473

Cynara cardunculus (taxid: 4265)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|P42210|ASPR_HORVU Phytepsin OS=Hordeum vulgare PE=1 SV=1

 Score =  499 bits (1286), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 242/371 (65%), Positives = 298/371 (80%), Gaps = 3/371 (0%)

Query: 45  RGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
            GK   I YG+GSI+G+FS+D+V VGD+VVKDQ FIEAT+E  +TFL+A+FDGI+GLGF+
Sbjct: 138 NGKPAAIQYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFK 197

Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV 164
           EI+VG AVPVW  M+EQGLVS+ VFSFWLNR  D  EGGEI+FGG+DPKH+ G+HTYVPV
Sbjct: 198 EISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPV 257

Query: 165 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSA 224
           T+KGYWQF++GD+L+G +STG C GGCAAI DSGTSLLAGPT ++TEIN  IG  GVVS 
Sbjct: 258 TQKGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQ 317

Query: 225 ECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGD-- 282
           ECK +VSQYG  I DLL++   P+K+C Q+GLC F+G   VS GI++VV+ E V +    
Sbjct: 318 ECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLR 377

Query: 283 -SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVS 341
              +CSACEMAVVW+QNQL Q +T++ +L Y+N+LC+ LP+PMGES +DC  + +MP++ 
Sbjct: 378 ADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIE 437

Query: 342 FTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDS 401
           FTIG K F L PE+YILK GEG A  CISGF A D+PPPRGPLWILGDVFMG YHTVFD 
Sbjct: 438 FTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDY 497

Query: 402 GKLRIGFAEAA 412
           GKLRIGFA+AA
Sbjct: 498 GKLRIGFAKAA 508

Hordeum vulgare (taxid: 4513)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: 4

EC: 0

>sp|Q9XEC4|APA3_ARATH Aspartic proteinase A3 OS=Arabidopsis thaliana GN=APA3 PE=1 SV=1

 Score =  489 bits (1258), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 224/383 (58%), Positives = 292/383 (76%)

Query: 30  FHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLT 89
           FH +   S   +    GK   I YG+G+ISG+FS D+V+VGD+VVK+Q FIEAT E  +T
Sbjct: 126 FHSKYKASQSSSYRKNGKPASIRYGTGAISGYFSNDDVKVGDIVVKEQEFIEATSEPGIT 185

Query: 90  FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGG 149
           FLLA+FDGI+GLGF+EI+VG++ PVW NMVE+GLV E +FSFWLNR+P   EGGEIVFGG
Sbjct: 186 FLLAKFDGILGLGFKEISVGNSTPVWYNMVEKGLVKEPIFSFWLNRNPKDPEGGEIVFGG 245

Query: 150 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 209
           VDPKHFKG+HT+VPVT KGYWQF++GD+ I  + TG C  GC+AI DSGTSLL GP+ V+
Sbjct: 246 VDPKHFKGEHTFVPVTHKGYWQFDMGDLQIAGKPTGYCAKGCSAIADSGTSLLTGPSTVI 305

Query: 210 TEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGI 269
           T INHAIG +G+VS ECK VV QYG  + + L++   P+KVC QIG+CA++G + VS GI
Sbjct: 306 TMINHAIGAQGIVSRECKAVVDQYGKTMLNSLLAQEDPKKVCSQIGVCAYDGTQSVSMGI 365

Query: 270 KTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESII 329
           ++VV+       + A+CSACEMA VW++++L Q QT+E++L+Y  ELCD +P    +S +
Sbjct: 366 QSVVDDGTSGLLNQAMCSACEMAAVWMESELTQNQTQERILAYAAELCDHIPTQNQQSAV 425

Query: 330 DCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGD 389
           DC R+ +MP V+F+IG + F+L+P+ YI K GEG+   C SGF A D+ PPRGPLWILGD
Sbjct: 426 DCGRVSSMPIVTFSIGGRSFDLTPQDYIFKIGEGVESQCTSGFTAMDIAPPRGPLWILGD 485

Query: 390 VFMGVYHTVFDSGKLRIGFAEAA 412
           +FMG YHTVFD GK R+GFA+AA
Sbjct: 486 IFMGPYHTVFDYGKGRVGFAKAA 508

Involved in the processing and degradation of storage proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q9XFX4|CARDB_CYNCA Procardosin-B OS=Cynara cardunculus GN=cardB PE=1 SV=1

 Score =  479 bits (1234), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 215/367 (58%), Positives = 284/367 (77%)

Query: 45  RGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
            G +  I YG+G+I GF+SQD+VEVGD+VV+ Q FIE T E    FL + FDGI+GLGF+
Sbjct: 139 NGTTASIQYGTGAIVGFYSQDSVEVGDLVVEHQDFIETTEEDDTVFLKSEFDGILGLGFQ 198

Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV 164
           EI+ G AVPVW NMV QGLV E VFSFWLNR+ D EEGGE+VFGGVDP HF+G HTYVPV
Sbjct: 199 EISAGKAVPVWYNMVNQGLVEEAVFSFWLNRNVDEEEGGELVFGGVDPNHFRGNHTYVPV 258

Query: 165 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSA 224
           T+KGYWQFE+GD+LIG++S+G C GGCAAI DSGTS  AGPT ++T+IN AIG +GV++ 
Sbjct: 259 TRKGYWQFEMGDVLIGDKSSGFCAGGCAAIADSGTSFFAGPTAIITQINQAIGAKGVLNQ 318

Query: 225 ECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSA 284
           +CK +V QYG  +  +L S + P+K+C  + LC F+GA  V + I++VV+K N  +    
Sbjct: 319 QCKTLVGQYGKNMIQMLTSEVQPDKICSHMKLCTFDGAHDVRSMIESVVDKNNDKSSGGE 378

Query: 285 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTI 344
           +C+ CEMA+V +QN++K+ +T++ +++++NE+CD LP    ESI+DC+ I +MPN++FTI
Sbjct: 379 ICTFCEMALVRMQNEIKRNETEDNIINHVNEVCDQLPTSSAESIVDCNGISSMPNIAFTI 438

Query: 345 GDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKL 404
           G K+F ++PEQYI K GEG A  CISGF A D+  P+GP+WILGD+FMG YHTVFD GKL
Sbjct: 439 GSKLFEVTPEQYIYKVGEGEAATCISGFTALDIMSPQGPIWILGDMFMGPYHTVFDYGKL 498

Query: 405 RIGFAEA 411
           R+GFAEA
Sbjct: 499 RVGFAEA 505

Aspartic protease. Cleaves alpha-lactalbumin but not beta-lactoglobulin.

Cynara cardunculus (taxid: 4265)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q9XFX3|CARDA_CYNCA Procardosin-A OS=Cynara cardunculus GN=cardA PE=1 SV=1

 Score =  434 bits (1117), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/365 (58%), Positives = 269/365 (73%), Gaps = 8/365 (2%)

Query: 51  INYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGD 110
           I YG+GSI+GFFSQD+V +GD+VVK+Q FIEAT E    FL   FDGI+GL F+ I+V  
Sbjct: 145 IIYGTGSITGFFSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLSFQTISV-- 202

Query: 111 AVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYW 170
             PVW NM+ QGLV E  FSFWLNR+ D EEGGE+VFGG+DP HF+G HTYVPVT + YW
Sbjct: 203 --PVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYW 260

Query: 171 QFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVV 230
           QF +GD+LIG++STG C  GC A  DSGTSLL+GPT +VT+INHAIG  GV++ +CK VV
Sbjct: 261 QFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGANGVMNQQCKTVV 320

Query: 231 SQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAG---DSAVCS 287
           S+YG  I ++L S + P+K+C  + LC F+GA  VS+ I++VV+K N  +       +C+
Sbjct: 321 SRYGRDIIEMLRSKIQPDKICSHMKLCTFDGARDVSSIIESVVDKNNDKSSGGIHDEMCT 380

Query: 288 ACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDK 347
            CEMAVVW+QN++KQ +T++ +++Y NELC+ L     E  +DC+ + +MPNVSFTIG K
Sbjct: 381 FCEMAVVWMQNEIKQSETEDNIINYANELCEHLSTSSEELQVDCNTLSSMPNVSFTIGGK 440

Query: 348 IFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIG 407
            F L+PEQYILK G+G A  CISGF A D     GPLWILGDVFM  YHTVFD G L +G
Sbjct: 441 KFGLTPEQYILKVGKGEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNLLVG 499

Query: 408 FAEAA 412
           FAEAA
Sbjct: 500 FAEAA 504

Aspartic proteinase with a high preference for bonds between hydrophobic residues. Cleaves alpha-lactalbumin but not beta-lactoglobulin.

Cynara cardunculus (taxid: 4265)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
224124910	507	predicted protein [Populus trichocarpa]	0.929	0.755	0.704	1e-166
294440430	506	aspartic protease 1 [Nicotiana tabacum]	0.927	0.754	0.703	1e-165
171854659	506	putative aspartic protease [Capsicum chi	0.929	0.756	0.698	1e-164
12231178	505	aspartic proteinase 4 [Nepenthes alata]	0.927	0.756	0.712	1e-162
82623417	506	aspartic protease precursor-like [Solanu	0.927	0.754	0.692	1e-161
418731269	372	aspartic protease, partial [Solanum tube	0.890	0.986	0.715	1e-161
350535356	506	aspartic protease precursor [Solanum lyc	0.927	0.754	0.687	1e-160
50540937	497	Asp [Solanum tuberosum]	0.895	0.742	0.703	1e-158
114786427	508	aspartic protease [Ipomoea batatas]	0.924	0.75	0.698	1e-158
356534977	508	PREDICTED: aspartic proteinase-like [Gly	0.890	0.722	0.718	1e-158

>gi|224124910|ref|XP_002319454.1| predicted protein [Populus trichocarpa] gi|222857830|gb|EEE95377.1| predicted protein [Populus trichocarpa]

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 272/386 (70%), Positives = 332/386 (86%), Gaps = 3/386 (0%)

Query: 30  FHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLT 89
           FH +   S     +  G  CEI+YGSGS+SGFFSQDNV+VGD+VVKDQVF+EAT+EGSL+
Sbjct: 122 FHSKYKSSRSSTYTKNGNFCEIHYGSGSVSGFFSQDNVQVGDLVVKDQVFVEATKEGSLS 181

Query: 90  FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGG 149
           F+L +FDGI+GLGF+EI+VG+ VP+W NM++Q LV +EVFSFWLNR+P+A+EGGE+VFGG
Sbjct: 182 FILGKFDGILGLGFQEISVGNVVPLWYNMIQQDLVDDEVFSFWLNRNPEAKEGGELVFGG 241

Query: 150 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 209
           VDPKHFKGKHTYVPVT+KGYWQ  +GD LIG  STG+CEGGCAAIVDSGTSLLAGPTP++
Sbjct: 242 VDPKHFKGKHTYVPVTQKGYWQINMGDFLIGKHSTGLCEGGCAAIVDSGTSLLAGPTPII 301

Query: 210 TEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGI 269
           TEINHAIG EG+VSAECK VVS YGDLIW+L++SG+ P KVC Q+GLC FN A+   TGI
Sbjct: 302 TEINHAIGAEGLVSAECKEVVSHYGDLIWELIISGVQPSKVCTQLGLCIFNEAKSARTGI 361

Query: 270 KTVVEKEN---VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGE 326
           ++VVEKEN    SAG+   C+AC+M V+WVQNQL++K TKE  ++Y+++LC+SLP+PMG+
Sbjct: 362 ESVVEKENKEKSSAGNDLPCTACQMLVIWVQNQLREKATKETAINYLDKLCESLPSPMGQ 421

Query: 327 SIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWI 386
           S IDC+ I TMPN++FTIGDK F+L+PEQYILKTGEGIA+VCISGFMA D+PPPRGPLWI
Sbjct: 422 SSIDCNSISTMPNITFTIGDKPFSLTPEQYILKTGEGIAQVCISGFMALDVPPPRGPLWI 481

Query: 387 LGDVFMGVYHTVFDSGKLRIGFAEAA 412
           LGDVFMG YHT+FD G L +GFAEAA
Sbjct: 482 LGDVFMGAYHTIFDYGNLEVGFAEAA 507

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294440430|gb|ADE74632.1| aspartic protease 1 [Nicotiana tabacum]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 270/384 (70%), Positives = 325/384 (84%), Gaps = 2/384 (0%)

Query: 30  FHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLT 89
           FH +   S     +  G+SC I YG+GSISG FSQDNV+VGD+VVKDQVFIEATRE S+T
Sbjct: 122 FHSKYKASKSTTYTRNGESCSIRYGTGSISGHFSQDNVQVGDLVVKDQVFIEATREPSIT 181

Query: 90  FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGG 149
           F++A+FDGI+GLGF+EI+VG+A PVW NMV QGLV E+VFSFW+NRD  A+EGGE+VFGG
Sbjct: 182 FIIAKFDGILGLGFQEISVGNATPVWYNMVGQGLVKEQVFSFWINRDATAKEGGELVFGG 241

Query: 150 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 209
           VD  HFKG HTYVP+T+KGYWQF +GD LIGN STGVC GGCAAIVDSGTSLLAGPT VV
Sbjct: 242 VDSNHFKGNHTYVPLTQKGYWQFNMGDFLIGNASTGVCAGGCAAIVDSGTSLLAGPTTVV 301

Query: 210 TEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGI 269
           T+INHAIG EG+VS ECK +VSQYG++IW+LLVSG+ P++VC Q GLC FNGA++VS+ I
Sbjct: 302 TQINHAIGAEGIVSMECKTIVSQYGEMIWNLLVSGVKPDQVCSQAGLCYFNGAQHVSSNI 361

Query: 270 KTVVEKEN--VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGES 327
           +TVVE+E    S G++ +C+ACEMAVVW+QNQLKQK+TKE+VL Y+N+LC+ LP+PMGES
Sbjct: 362 RTVVERETEGSSVGEAPLCTACEMAVVWMQNQLKQKETKERVLEYVNQLCEKLPSPMGES 421

Query: 328 IIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWIL 387
           +IDC  I  MPN++FTI DK + L+PEQYILKTGEGI  +C+SGF A D+PPPRGPLWIL
Sbjct: 422 VIDCSMISAMPNITFTIKDKAYVLTPEQYILKTGEGITTICMSGFAALDVPPPRGPLWIL 481

Query: 388 GDVFMGVYHTVFDSGKLRIGFAEA 411
           GDVFMGVYHTVFD G  R+GFAEA
Sbjct: 482 GDVFMGVYHTVFDYGNSRLGFAEA 505

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171854659|dbj|BAG16519.1| putative aspartic protease [Capsicum chinense]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 269/385 (69%), Positives = 326/385 (84%), Gaps = 2/385 (0%)

Query: 30  FHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLT 89
           FH +         +  GKSC I YG+GSISG FSQDNV+VGD+VVKDQVFIEATRE S+T
Sbjct: 122 FHHKYKAGKSSTYTRNGKSCSIRYGTGSISGHFSQDNVQVGDLVVKDQVFIEATREPSIT 181

Query: 90  FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGG 149
           F++ +FDGI+GLGF+EI+VG+A PVW NMV+QGLV E VFSFW NRD   +EGGE+VFGG
Sbjct: 182 FIIGKFDGILGLGFQEISVGNATPVWYNMVDQGLVKEPVFSFWFNRDASTKEGGELVFGG 241

Query: 150 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 209
           VDPKHFKG HTYVP+T+KGYWQF +GD LIGN STG C GGCAAIVDSGTSLLAGPT +V
Sbjct: 242 VDPKHFKGNHTYVPLTQKGYWQFNMGDFLIGNTSTGYCAGGCAAIVDSGTSLLAGPTTIV 301

Query: 210 TEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGI 269
           T++NHAIG EGVVSAECK +VSQYG+++WDLLVSG+ P++VC Q GLC FNGAE+VS+ I
Sbjct: 302 TQLNHAIGAEGVVSAECKTIVSQYGEVLWDLLVSGVRPDQVCSQAGLCFFNGAEHVSSNI 361

Query: 270 KTVVEKEN--VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGES 327
           +TVVE+EN   S G++ +C+ CEMAVVW+QNQLKQ+ TKE+VL Y+++LC+ LP+PMGES
Sbjct: 362 RTVVERENEGSSVGEAPLCTVCEMAVVWIQNQLKQQGTKERVLEYVDQLCEKLPSPMGES 421

Query: 328 IIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWIL 387
           ++DC+ I ++PN++FTI DK F L+PEQYILKTGEGIA +CISGF AFD+PPPRGPLWIL
Sbjct: 422 VVDCNSISSLPNITFTIKDKAFVLTPEQYILKTGEGIASICISGFAAFDVPPPRGPLWIL 481

Query: 388 GDVFMGVYHTVFDSGKLRIGFAEAA 412
           GDVFMG YHTVFD G  ++GFAEAA
Sbjct: 482 GDVFMGPYHTVFDYGNSQVGFAEAA 506

Source: Capsicum chinense

Species: Capsicum chinense

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12231178|dbj|BAB20972.1| aspartic proteinase 4 [Nepenthes alata]

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 275/386 (71%), Positives = 325/386 (84%), Gaps = 4/386 (1%)

Query: 30  FHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLT 89
           FH +   S     +  GKSCEI+YGSGSISGFFSQD VEVG++ VK+QVFIEA+RE SLT
Sbjct: 121 FHSKYKSSKSSTYTKIGKSCEIDYGSGSISGFFSQDIVEVGNLAVKNQVFIEASREKSLT 180

Query: 90  FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGG 149
           F LA+FDGI+GLGF+EI+VGD VPVW NMVEQGLVSE+VFSFW NRDP A+ GGEIVFGG
Sbjct: 181 FALAKFDGILGLGFQEISVGDVVPVWYNMVEQGLVSEKVFSFWFNRDPKAKIGGEIVFGG 240

Query: 150 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 209
           +D KHF G+H YVP+T+KGYWQFE+G+ LIGN STG C GGC AIVDSGTSLLAGP  VV
Sbjct: 241 IDEKHFVGEHIYVPITRKGYWQFEMGNFLIGNYSTGFCRGGCDAIVDSGTSLLAGPMHVV 300

Query: 210 TEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGI 269
           TE+NHAIG EG+ S ECK VV QYGD+IWDLLVSG+ P+K+C Q+ LC FN A+++S GI
Sbjct: 301 TEVNHAIGAEGIASMECKEVVYQYGDMIWDLLVSGVQPDKICSQLALC-FNDAQFLSIGI 359

Query: 270 KTVVEKE---NVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGE 326
           KTV+E+E   N S  D  +C+ACEMAVVW+QNQL+++ TKEKVL+YINELCDSLP+PMGE
Sbjct: 360 KTVIERENRKNSSVADDFLCTACEMAVVWIQNQLRREVTKEKVLNYINELCDSLPSPMGE 419

Query: 327 SIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWI 386
           S+IDCD IP MPNV+FTIG+K F L+PEQY+LK GEG A VC+SGF+A D+PPP GPLWI
Sbjct: 420 SVIDCDSIPYMPNVTFTIGEKPFKLTPEQYVLKAGEGDAMVCLSGFIALDVPPPSGPLWI 479

Query: 387 LGDVFMGVYHTVFDSGKLRIGFAEAA 412
           LGDVFMGVYHTVFD G L++GFAE+A
Sbjct: 480 LGDVFMGVYHTVFDFGNLKLGFAESA 505

Source: Nepenthes alata

Species: Nepenthes alata

Genus: Nepenthes

Family: Nepenthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82623417|gb|ABB87123.1| aspartic protease precursor-like [Solanum tuberosum]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 266/384 (69%), Positives = 322/384 (83%), Gaps = 2/384 (0%)

Query: 31  HLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTF 90
           H +   S     +  G+SC I YG+GSISG FS DNV+VGD+VVKDQVFIEATRE S+TF
Sbjct: 123 HSKYKASKSSTYTRDGESCSIRYGTGSISGHFSMDNVQVGDLVVKDQVFIEATREPSITF 182

Query: 91  LLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGV 150
           ++A+FDGI+GLGF+EI+VG+  PVW NMV QGLV E VFSFW NRD +A+EGGE+VFGGV
Sbjct: 183 IVAKFDGILGLGFQEISVGNTTPVWYNMVGQGLVKESVFSFWFNRDANAKEGGELVFGGV 242

Query: 151 DPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVT 210
           DPKHFKG HTYVP+T+KGYWQF +GD LIGN STG C GGCAAIVDSGTSLLAGPT +VT
Sbjct: 243 DPKHFKGNHTYVPLTQKGYWQFNMGDFLIGNTSTGYCAGGCAAIVDSGTSLLAGPTTIVT 302

Query: 211 EINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIK 270
           +INHAIG EG+VS ECK +VSQYG++IWDLLVSG+ P++VC Q GLC  +GA++VS+ I+
Sbjct: 303 QINHAIGAEGIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIR 362

Query: 271 TVVEKEN--VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESI 328
           TVVE+E    S G++ +C+ACEMAVVW+QNQLKQ  TKEKVL Y+N+LC+ +P+PMGES 
Sbjct: 363 TVVERETEGSSVGEAPLCTACEMAVVWMQNQLKQAGTKEKVLEYVNQLCEKIPSPMGEST 422

Query: 329 IDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILG 388
           IDC+ I +MP++SFTI DK F L+PEQYILKTGEG+A +C+SGF A D+PPPRGPLWILG
Sbjct: 423 IDCNSISSMPDISFTIKDKAFVLTPEQYILKTGEGVATICVSGFAALDVPPPRGPLWILG 482

Query: 389 DVFMGVYHTVFDSGKLRIGFAEAA 412
           DVFMG YHTVFD GK ++GFAEAA
Sbjct: 483 DVFMGPYHTVFDYGKSQVGFAEAA 506

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|418731269|gb|AFX67029.1| aspartic protease, partial [Solanum tuberosum]

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 264/369 (71%), Positives = 318/369 (86%), Gaps = 2/369 (0%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G+SC I YG+GSISG FS DNV+VGD+VVKDQVFIEATRE S+TF++A+FDGI+GLGF+E
Sbjct: 4   GESCSIRYGTGSISGHFSMDNVQVGDLVVKDQVFIEATREPSITFIVAKFDGILGLGFQE 63

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           I+VG+  PVW NMV QGLV E VFSFW NRD +A+EGGE+VFGGVDPKHFKG HTYVP+T
Sbjct: 64  ISVGNTTPVWYNMVGQGLVKESVFSFWFNRDANAKEGGELVFGGVDPKHFKGNHTYVPLT 123

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 225
           +KGYWQF +GD LIGN STG C GGCAAIVDSGTSLLAGPT +VT+INHAIG EG+VS E
Sbjct: 124 QKGYWQFNMGDFLIGNTSTGYCAGGCAAIVDSGTSLLAGPTTIVTQINHAIGAEGIVSME 183

Query: 226 CKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN--VSAGDS 283
           CK +VSQYG++IWDLLVSG+ P++VC Q GLC  +GA++VS+ I+TVVE+E    S G++
Sbjct: 184 CKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIRTVVERETEGSSVGEA 243

Query: 284 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFT 343
            +C+ACEMAVVW+QNQLKQ  TKEKVL Y+N+LC+ +P+PMGES IDC+ I +MP++SFT
Sbjct: 244 PLCTACEMAVVWMQNQLKQAGTKEKVLEYVNQLCEKIPSPMGESTIDCNSISSMPDISFT 303

Query: 344 IGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGK 403
           I DK F L+PEQYILKTGEG+A +C+SGF A D+PPPRGPLWILGDVFMG YHTVFD GK
Sbjct: 304 IKDKAFVLTPEQYILKTGEGVATICVSGFAALDVPPPRGPLWILGDVFMGPYHTVFDYGK 363

Query: 404 LRIGFAEAA 412
            ++GFAEAA
Sbjct: 364 SQVGFAEAA 372

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535356|ref|NP_001234702.1| aspartic protease precursor [Solanum lycopersicum] gi|951449|gb|AAB18280.1| aspartic protease precursor [Solanum lycopersicum]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 264/384 (68%), Positives = 323/384 (84%), Gaps = 2/384 (0%)

Query: 31  HLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTF 90
           H +   S     +  G+SC I YG+GSISG FS DNV+VGD+VVKDQVFIEATRE S+TF
Sbjct: 123 HSKYQASKSSTYTRDGESCSIRYGTGSISGHFSMDNVQVGDLVVKDQVFIEATREPSITF 182

Query: 91  LLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGV 150
           ++A+FDGI+GLGF+EI+VG+  PVW NMV QGLV E VFSFW NRD +A+EGGE+VFGGV
Sbjct: 183 IVAKFDGILGLGFQEISVGNTTPVWYNMVGQGLVKEPVFSFWFNRDANAKEGGELVFGGV 242

Query: 151 DPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVT 210
           DPKHFKG HT VP+T+KGYWQF +GD LIGN STG C GGCAAIVDSGTSLLAGPT +VT
Sbjct: 243 DPKHFKGNHTCVPLTQKGYWQFNMGDFLIGNTSTGYCAGGCAAIVDSGTSLLAGPTTIVT 302

Query: 211 EINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIK 270
           +INHAIG EG+VS ECK +VSQYG++IWDLLVSG+ P++VC Q GLC  +G+++VS+ I+
Sbjct: 303 QINHAIGAEGIVSMECKTIVSQYGEMIWDLLVSGIRPDQVCSQAGLCFLDGSQHVSSNIR 362

Query: 271 TVVEKEN--VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESI 328
           TVVE+E    S G++ +C+ACEMAVVW+QNQLKQ+QTKEKVL Y+N+LC+ +P+PMGES 
Sbjct: 363 TVVERETEGSSVGEAPLCTACEMAVVWMQNQLKQEQTKEKVLEYVNQLCEKIPSPMGESA 422

Query: 329 IDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILG 388
           IDC+RI +MP+++FTI D  F L+PEQYILKTGEG+A +C+SGF A D+PPPRGPLWILG
Sbjct: 423 IDCNRISSMPDITFTIKDTAFVLTPEQYILKTGEGVATICVSGFAALDVPPPRGPLWILG 482

Query: 389 DVFMGVYHTVFDSGKLRIGFAEAA 412
           DVFMG YHTVFD GK ++GFAEAA
Sbjct: 483 DVFMGPYHTVFDYGKSQVGFAEAA 506

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50540937|gb|AAT77954.1| Asp [Solanum tuberosum]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 261/371 (70%), Positives = 316/371 (85%), Gaps = 2/371 (0%)

Query: 42  ISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGL 101
           I   G+SC I Y +GSISG FS DNV+VGD+VVKDQVFIEATRE S+TF++A+FDGI+GL
Sbjct: 122 IHRDGESCSIRYETGSISGHFSMDNVQVGDLVVKDQVFIEATREPSITFIVAKFDGILGL 181

Query: 102 GFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTY 161
           GF+EI+VG+  PVW NMV QGLV E VFSFW NRD +A+EGGE+VFGGVDPKHFKG HTY
Sbjct: 182 GFQEISVGNTTPVWYNMVGQGLVKEPVFSFWFNRDANAKEGGELVFGGVDPKHFKGNHTY 241

Query: 162 VPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGV 221
           VP+T+KGYWQF +GD LIGN STG C GGCAAIVDSGTSLLAGPT +V +INHAIG EG+
Sbjct: 242 VPLTQKGYWQFNMGDFLIGNTSTGYCAGGCAAIVDSGTSLLAGPTTIVAQINHAIGAEGI 301

Query: 222 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN--VS 279
           VS ECK +VSQYG++IWDLLVSG+ P++VC Q GLC  +GA++VS+ IKTVVE+E    S
Sbjct: 302 VSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIKTVVERETEGSS 361

Query: 280 AGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPN 339
            G++ +C+ACEMAVVW+QNQLKQ+ TKEKVL Y+N+LC+ +P+PMGES IDC+ I +MP+
Sbjct: 362 VGEAPLCTACEMAVVWMQNQLKQEGTKEKVLEYVNQLCEKIPSPMGESAIDCNNISSMPD 421

Query: 340 VSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVF 399
           ++FTI DK F L+PEQYILKTGEG+A +C+SGF A D+PPPRGPLWILGDVFMG YHTVF
Sbjct: 422 ITFTIKDKAFVLTPEQYILKTGEGVATICVSGFAALDVPPPRGPLWILGDVFMGPYHTVF 481

Query: 400 DSGKLRIGFAE 410
           D GK ++GFAE
Sbjct: 482 DYGKSQVGFAE 492

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|114786427|gb|ABI78942.1| aspartic protease [Ipomoea batatas]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 274/392 (69%), Positives = 316/392 (80%), Gaps = 11/392 (2%)

Query: 30  FHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLT 89
           FH +   S     +  G SC I YGSGSISGF SQDNV VGD+VVKDQVFIE T+E SLT
Sbjct: 119 FHSKYKSSKSSTYTKIGTSCSITYGSGSISGFLSQDNVGVGDLVVKDQVFIETTKEPSLT 178

Query: 90  FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGG 149
           F+LA+FDG++GLGF+EI+V D VPVW NMVEQGLV E VFSFWLNRD +AEEGGE++FGG
Sbjct: 179 FVLAKFDGLLGLGFQEISVEDVVPVWYNMVEQGLVDEPVFSFWLNRDTNAEEGGELIFGG 238

Query: 150 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT--- 206
           VDP HFKGKHTYVPVT+KGYWQFE+GD LIGN STG CEGGCAAIVDSGTSLL GPT   
Sbjct: 239 VDPNHFKGKHTYVPVTQKGYWQFEMGDFLIGNSSTGFCEGGCAAIVDSGTSLLTGPTTIV 298

Query: 207 -----PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNG 261
                 +VTEINHAIG EGVVS ECK +VSQYG++IWDLLVSG+ P++VC Q+GLC FNG
Sbjct: 299 TEINHAIVTEINHAIGAEGVVSTECKEIVSQYGNMIWDLLVSGVKPDEVCSQVGLCFFNG 358

Query: 262 AEYVSTGIKTVVEKENVSAGDS-AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSL 320
           A    + I  VVEK+N     S  +C+ACEMAVVW+QNQLKQK  KEKV  Y+N+LC+ +
Sbjct: 359 A--AGSNIGMVVEKDNEGKSSSDPMCTACEMAVVWMQNQLKQKVVKEKVFDYVNQLCEKI 416

Query: 321 PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 380
           P+PMGES IDC+ I  MPNV+F I DK F L+PEQYILKTGEG+A +C+SGF+A D+P P
Sbjct: 417 PSPMGESTIDCNSISNMPNVTFKIADKDFVLTPEQYILKTGEGVATICVSGFLAMDVPAP 476

Query: 381 RGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
           RGPLWILGDVFMGVYHTVFD G L+IGFAEAA
Sbjct: 477 RGPLWILGDVFMGVYHTVFDYGNLQIGFAEAA 508

Source: Ipomoea batatas

Species: Ipomoea batatas

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534977|ref|XP_003536026.1| PREDICTED: aspartic proteinase-like [Glycine max]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 266/370 (71%), Positives = 322/370 (87%), Gaps = 3/370 (0%)

Query: 45  RGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
            G SC+I YGSGSISGFFS+D+V+VGDVVVK+Q FIEATREGSL+F+LA+FDG++GLGF+
Sbjct: 140 NGTSCKIGYGSGSISGFFSKDHVKVGDVVVKNQDFIEATREGSLSFVLAKFDGLLGLGFQ 199

Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV 164
           EI+V +AVPVW NMV+Q LVSE+VFSFWLN DP A++GGE++FGG+DPKHFKG H YVPV
Sbjct: 200 EISVENAVPVWYNMVKQNLVSEQVFSFWLNGDPKAKDGGELIFGGIDPKHFKGDHIYVPV 259

Query: 165 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSA 224
           TKKGYWQ E+GD  IG  STGVCEGGCAAIVDSGTSLLAGPT VVTEINHAIG EGV+S 
Sbjct: 260 TKKGYWQIEMGDFFIGGLSTGVCEGGCAAIVDSGTSLLAGPTTVVTEINHAIGAEGVLSV 319

Query: 225 ECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEK--ENVSAGD 282
           ECK VVS+YG+L+WDLLVSG+ P+ VC Q+GLC F  A+  S GI+ V EK    +SA D
Sbjct: 320 ECKEVVSEYGELLWDLLVSGVRPDDVCSQVGLC-FKRAKSESNGIEMVTEKGQRELSAKD 378

Query: 283 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSF 342
           +A+C++C+M VVW+QNQLKQK+TKE V +Y+N+LC+SLP+P GES++DC+ I  +PN++F
Sbjct: 379 TALCTSCQMLVVWIQNQLKQKKTKEIVFNYVNQLCESLPSPNGESVVDCNSIYGLPNITF 438

Query: 343 TIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSG 402
           T+GDK F L+PEQYILKTGEGIAEVC+SGF+AFD+PPPRGPLWILGDVFM VYHTVFD G
Sbjct: 439 TVGDKPFTLTPEQYILKTGEGIAEVCLSGFIAFDIPPPRGPLWILGDVFMRVYHTVFDYG 498

Query: 403 KLRIGFAEAA 412
            LR+GFA+AA
Sbjct: 499 NLRVGFAKAA 508

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
UNIPROTKB|B9RXH6	511	RCOM_0903730 "Aspartic protein	0.890	0.718	0.648	1.1e-133
TAIR|locus:2008940	506	APA1 "aspartic proteinase A1"	0.888	0.723	0.633	2.1e-132
TAIR|locus:2018037	513	AT1G62290 [Arabidopsis thalian	0.927	0.744	0.605	6.6e-129
TAIR|locus:2137189	508	AT4G04460 [Arabidopsis thalian	0.929	0.753	0.561	1.1e-119
WB|WBGene00000217	444	asp-4 [Caenorhabditis elegans	0.432	0.400	0.455	5.4e-65
RGD|61940	420	Napsa "napsin A aspartic pepti	0.461	0.452	0.408	6.9e-59
DICTYBASE|DDB_G0279411	383	ctsD "cathepsin D" [Dictyostel	0.441	0.475	0.455	6.1e-58
UNIPROTKB|E2RJN2	396	CTSE "Uncharacterized protein"	0.444	0.462	0.417	1.4e-54
FB|FBgn0033933	404	CG10104 [Drosophila melanogast	0.417	0.425	0.4	1.8e-54
UNIPROTKB|P43159	396	CTSE "Cathepsin E" [Oryctolagu	0.512	0.532	0.378	6.1e-54

UNIPROTKB|B9RXH6 RCOM_0903730 "Aspartic proteinase, putative" [Ricinus communis (taxid:3988)]

 Score = 1310 (466.2 bits), Expect = 1.1e-133, P = 1.1e-133
 Identities = 240/370 (64%), Positives = 294/370 (79%)

Query:    46 GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFRE 105
             GKS EI+YGSG+ISGFFS               FIEAT+E  +TF+ A+FDGI+GLGF+E
Sbjct:   142 GKSAEIHYGSGAISGFFSSDNVVVGNLVVKDQEFIEATKEPGVTFVAAKFDGILGLGFQE 201

Query:   106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
             I+VG+AVPVW NM++QGL+ E VFSFWLNR+   EEGGEIVFGGVD  H+KGKHTYVPVT
Sbjct:   202 ISVGNAVPVWYNMIKQGLIKEPVFSFWLNRNTQGEEGGEIVFGGVDLNHYKGKHTYVPVT 261

Query:   166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 225
             +KGYWQFE+GD+LIG++ T  C GGC+AI DSGTSLLAGPT VVT IN AIG  GV S E
Sbjct:   262 QKGYWQFEMGDVLIGHKPTEYCAGGCSAIADSGTSLLAGPTTVVTLINEAIGATGVASQE 321

Query:   226 CKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN-VSAG--D 282
             CK V++QYG+ I DLL++   P+K+C QIGLC F+G   VS GI++VV+  N  S+G   
Sbjct:   322 CKTVIAQYGETIMDLLIAEAQPKKICSQIGLCTFDGTRGVSMGIQSVVDDNNDKSSGIVR 381

Query:   283 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSF 342
              A+CSACEM VVW+QNQL++ QT++++L+Y+NELCD +PNP+GESI+DC  I +MP VSF
Sbjct:   382 DAMCSACEMTVVWMQNQLRENQTQDRILNYVNELCDRIPNPLGESIVDCGSISSMPVVSF 441

Query:   343 TIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSG 402
             TIG K+F+LSP++YILK GEG    CISGFMA D+PPPRGPLWILGD+FMG YHTVFD G
Sbjct:   442 TIGGKVFDLSPQEYILKVGEGAQAQCISGFMALDVPPPRGPLWILGDIFMGRYHTVFDYG 501

Query:   403 KLRIGFAEAA 412
              LR+GFAEAA
Sbjct:   502 NLRVGFAEAA 511

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2008940 APA1 "aspartic proteinase A1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1298 (462.0 bits), Expect = 2.1e-132, P = 2.1e-132
 Identities = 235/371 (63%), Positives = 291/371 (78%)

Query:    46 GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFRE 105
             GK+  I+YG+G+I+GFFS               FIEAT+E  +TF++A+FDGI+GLGF+E
Sbjct:   137 GKAAAIHYGTGAIAGFFSNDAVTVGDLVVKDQEFIEATKEPGITFVVAKFDGILGLGFQE 196

Query:   106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
             I+VG A PVW NM++QGL+ E VFSFWLNR+ D EEGGE+VFGGVDP HFKGKHTYVPVT
Sbjct:   197 ISVGKAAPVWYNMLKQGLIKEPVFSFWLNRNADEEEGGELVFGGVDPNHFKGKHTYVPVT 256

Query:   166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 225
             +KGYWQF++GD+LIG   TG CE GC+AI DSGTSLLAGPT ++T INHAIG  GVVS +
Sbjct:   257 QKGYWQFDMGDVLIGGAPTGFCESGCSAIADSGTSLLAGPTTIITMINHAIGAAGVVSQQ 316

Query:   226 CKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVS----AG 281
             CK VV QYG  I DLL+S   P+K+C QIGLC F+G   VS GI++VV+KEN       G
Sbjct:   317 CKTVVDQYGQTILDLLLSETQPKKICSQIGLCTFDGTRGVSMGIESVVDKENAKLSNGVG 376

Query:   282 DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVS 341
             D+A CSACEMAVVW+Q+QL+Q  T+E++L+Y+NELC+ LP+PMGES +DC ++ TMP VS
Sbjct:   377 DAA-CSACEMAVVWIQSQLRQNMTQERILNYVNELCERLPSPMGESAVDCAQLSTMPTVS 435

Query:   342 FTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDS 401
              TIG K+F+L+PE+Y+LK GEG    CISGF+A D+ PPRGPLWILGDVFMG YHTVFD 
Sbjct:   436 LTIGGKVFDLAPEEYVLKVGEGPVAQCISGFIALDVAPPRGPLWILGDVFMGKYHTVFDF 495

Query:   402 GKLRIGFAEAA 412
             G  ++GFAEAA
Sbjct:   496 GNEQVGFAEAA 506

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS;IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0004175 "endopeptidase activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048513 "organ development" evidence=RCA

TAIR|locus:2018037 AT1G62290 [Arabidopsis thaliana (taxid:3702)]

 Score = 1265 (450.4 bits), Expect = 6.6e-129, P = 6.6e-129
 Identities = 233/385 (60%), Positives = 290/385 (75%)

Query:    30 FHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLT 89
             FH +   S        GK   I+YGSGSISGFFS               FIE T E  LT
Sbjct:   128 FHAKYKSSRSSTYKKSGKRAAIHYGSGSISGFFSYDAVTVGDLVVKDQEFIETTSEPGLT 187

Query:    90 FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGG 149
             FL+A+FDG++GLGF+EIAVG+A PVW NM++QGL+   VFSFWLNRDP +EEGGEIVFGG
Sbjct:   188 FLVAKFDGLLGLGFQEIAVGNATPVWYNMLKQGLIKRPVFSFWLNRDPKSEEGGEIVFGG 247

Query:   150 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 209
             VDPKHF+G+HT+VPVT++GYWQF++G++LI  +STG C  GC+AI DSGTSLLAGPT VV
Sbjct:   248 VDPKHFRGEHTFVPVTQRGYWQFDMGEVLIAGESTGYCGSGCSAIADSGTSLLAGPTAVV 307

Query:   210 TEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGI 269
               IN AIG  GVVS +CK VV QYG  I DLL++   P+K+C QIGLCA++G   VS GI
Sbjct:   308 AMINKAIGASGVVSQQCKTVVDQYGQTILDLLLAETQPKKICSQIGLCAYDGTHGVSMGI 367

Query:   270 KTVVEKENV--SAG-DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGE 326
             ++VV+KEN   S+G   A C ACEMAVVW+Q+QL+Q  T+E++++YINE+C+ +P+P GE
Sbjct:   368 ESVVDKENTRSSSGLRDAGCPACEMAVVWIQSQLRQNMTQERIVNYINEICERMPSPNGE 427

Query:   327 SIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWI 386
             S +DC ++  MP VSFTIG K+F+L+PE+Y+LK GEG    CISGF A D+PPPRGPLWI
Sbjct:   428 SAVDCSQLSKMPTVSFTIGGKVFDLAPEEYVLKIGEGPVAQCISGFTALDIPPPRGPLWI 487

Query:   387 LGDVFMGVYHTVFDSGKLRIGFAEA 411
             LGDVFMG YHTVFD G  ++GFAEA
Sbjct:   488 LGDVFMGKYHTVFDFGNEQVGFAEA 512

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2137189 AT4G04460 [Arabidopsis thaliana (taxid:3702)]

 Score = 1178 (419.7 bits), Expect = 1.1e-119, P = 1.1e-119
 Identities = 215/383 (56%), Positives = 279/383 (72%)

Query:    30 FHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLT 89
             FH +   S   +    GK   I YG+G+ISG+FS               FIEAT E  +T
Sbjct:   126 FHSKYKASQSSSYRKNGKPASIRYGTGAISGYFSNDDVKVGDIVVKEQEFIEATSEPGIT 185

Query:    90 FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGG 149
             FLLA+FDGI+GLGF+EI+VG++ PVW NMVE+GLV E +FSFWLNR+P   EGGEIVFGG
Sbjct:   186 FLLAKFDGILGLGFKEISVGNSTPVWYNMVEKGLVKEPIFSFWLNRNPKDPEGGEIVFGG 245

Query:   150 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 209
             VDPKHFKG+HT+VPVT KGYWQF++GD+ I  + TG C  GC+AI DSGTSLL GP+ V+
Sbjct:   246 VDPKHFKGEHTFVPVTHKGYWQFDMGDLQIAGKPTGYCAKGCSAIADSGTSLLTGPSTVI 305

Query:   210 TEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGI 269
             T INHAIG +G+VS ECK VV QYG  + + L++   P+KVC QIG+CA++G + VS GI
Sbjct:   306 TMINHAIGAQGIVSRECKAVVDQYGKTMLNSLLAQEDPKKVCSQIGVCAYDGTQSVSMGI 365

Query:   270 KTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESII 329
             ++VV+       + A+CSACEMA VW++++L Q QT+E++L+Y  ELCD +P    +S +
Sbjct:   366 QSVVDDGTSGLLNQAMCSACEMAAVWMESELTQNQTQERILAYAAELCDHIPTQNQQSAV 425

Query:   330 DCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGD 389
             DC R+ +MP V+F+IG + F+L+P+ YI K GEG+   C SGF A D+ PPRGPLWILGD
Sbjct:   426 DCGRVSSMPIVTFSIGGRSFDLTPQDYIFKIGEGVESQCTSGFTAMDIAPPRGPLWILGD 485

Query:   390 VFMGVYHTVFDSGKLRIGFAEAA 412
             +FMG YHTVFD GK R+GFA+AA
Sbjct:   486 IFMGPYHTVFDYGKGRVGFAKAA 508

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

WB|WBGene00000217 asp-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 420 (152.9 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
 Identities = 82/180 (45%), Positives = 113/180 (62%)

Query:    46 GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFRE 105
             G+   I YG+GS+ GF S+              F EAT E  +TF+ A+FDGI+G+ + E
Sbjct:   150 GRKMAIQYGTGSMKGFISKDSVCVAGVCAEDQPFAEATSEPGITFVAAKFDGILGMAYPE 209

Query:   106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
             IAV    PV++ + EQ  V   +FSFWLNR+PD+E GGEI FGG+D + +    TYVPVT
Sbjct:   210 IAVLGVQPVFNTLFEQKKVPSNLFSFWLNRNPDSEIGGEITFGGIDSRRYVEPITYVPVT 269

Query:   166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 225
             +KGYWQF++ D ++G+   G C  GC AI D+GTSL+AGP   +  I + IG E ++  E
Sbjct:   270 RKGYWQFKM-DKVVGSGVLG-CSNGCQAIADTGTSLIAGPKAQIEAIQNFIGAEPLIKGE 327

GO:0006508 "proteolysis" evidence=IEA;IMP

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA;ISS

GO:0008219 "cell death" evidence=IMP

GO:0070265 "necrotic cell death" evidence=IGI;IMP

GO:0005764 "lysosome" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

RGD|61940 Napsa "napsin A aspartic peptidase" [Rattus norvegicus (taxid:10116)]

 Score = 388 (141.6 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
 Identities = 78/191 (40%), Positives = 111/191 (58%)

Query:    46 GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFRE 105
             G    I YG+G +SG  S+              F EA  E SL F LARFDGI+GLGF  
Sbjct:   130 GTKFAIQYGTGRLSGILSRDNLTIGGIHNVSVTFGEALWEPSLVFALARFDGILGLGFPT 189

Query:   106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
             +AVG   P  D +VEQ L+ + VFSF+LNRD +  +GGE+V GG DP H+    T++PVT
Sbjct:   190 LAVGGVQPPLDALVEQRLLEKPVFSFYLNRDSEGSDGGELVLGGSDPDHYVPPLTFIPVT 249

Query:   166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 225
                YWQ  +  + +G     +C  GC AI+D+GTSL+ GP+  +  +N A+GG  +++ +
Sbjct:   250 IPAYWQVHMQSVKVGT-GLNLCAQGCGAILDTGTSLITGPSEEIRALNKAVGGFPLLTGQ 308

Query:   226 CKLVVSQYGDL 236
               +  S+  +L
Sbjct:   309 YLIQCSKIPEL 319

GO:0004175 "endopeptidase activity" evidence=ISO

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA;ISO

GO:0005764 "lysosome" evidence=IEA;ISO

GO:0008233 "peptidase activity" evidence=ISO

GO:0033619 "membrane protein proteolysis" evidence=IEA;ISO

GO:0043129 "surfactant homeostasis" evidence=IEA;ISO

GO:0097208 "alveolar lamellar body" evidence=IEA;ISO

DICTYBASE|DDB_G0279411 ctsD "cathepsin D" [Dictyostelium discoideum (taxid:44689)]

 Score = 412 (150.1 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
 Identities = 86/189 (45%), Positives = 111/189 (58%)

Query:    46 GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFRE 105
             G    I YGSG++SGF SQ              F EAT E  + F  A+FDGI+GL F+ 
Sbjct:   119 GTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQLFAEATAEPGIAFDFAKFDGILGLAFQS 178

Query:   106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
             I+V    PV+ NM+ QGLVS  +FSFWL+R P A  GGE+ FG +D   + G  TYVP+T
Sbjct:   179 ISVNSIPPVFYNMLSQGLVSSTLFSFWLSRTPGAN-GGELSFGSIDNTKYTGDITYVPLT 237

Query:   166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG-----GEG 220
              + YW+F + D  I  QS G C   C AI DSGTSL+AGP   +T +N  +G     GEG
Sbjct:   238 NETYWEFVMDDFAIDGQSAGFCGTTCHAICDSGTSLIAGPMADITALNEKLGAVILNGEG 297

Query:   221 VVSAECKLV 229
             V S +C ++
Sbjct:   298 VFS-DCSVI 305

GO:0005615 "extracellular space" evidence=IDA

GO:0005764 "lysosome" evidence=IEA;IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|E2RJN2 CTSE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 383 (139.9 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
 Identities = 78/187 (41%), Positives = 105/187 (56%)

Query:    43 SIRGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLG 102
             S  G    I YG+GS+SG                  F E+  E   TF+ A FDGI+GLG
Sbjct:   129 SALGNQFSIQYGTGSLSGIIGADQVNVEGLVVVGQQFGESVTEPGQTFVNAEFDGILGLG 188

Query:   103 FREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYV 162
             +  +AVG   PV+DNM+ Q LV   +FS +++ DP+   G E++FGG D  HF G   +V
Sbjct:   189 YPSLAVGGVTPVFDNMMAQNLVDIPMFSVYMSSDPEGGTGSELIFGGYDHSHFSGNLNWV 248

Query:   163 PVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE--- 219
             PVTK+GYWQ  L  I +G  +   C  GC AIVD+GTSL+ GP+  + ++ +AIG E   
Sbjct:   249 PVTKQGYWQIALDAIQVGG-TVMFCSEGCQAIVDTGTSLITGPSDEIKQLQNAIGAEPMD 307

Query:   220 GVVSAEC 226
             G    EC
Sbjct:   308 GEYGVEC 314

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

FB|FBgn0033933 CG10104 [Drosophila melanogaster (taxid:7227)]

 Score = 332 (121.9 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
 Identities = 70/175 (40%), Positives = 102/175 (58%)

Query:    44 IRGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGF 103
             +RG    I+YGSGS+SGF S               F EAT      FL A+FDGI GL +
Sbjct:   139 VRGDHFAIHYGSGSLSGFLSTDTVRVAGLEIRDQTFAEATEMPGPIFLAAKFDGIFGLAY 198

Query:   104 REIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
             R I++    P +  M+EQGL+++ +FS +L+R+ + ++GG I FGG +P ++ G  TYV 
Sbjct:   199 RSISMQRIKPPFYAMMEQGLLTKPIFSVYLSRNGE-KDGGAIFFGGSNPHYYTGNFTYVQ 257

Query:   164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
             V+ + YWQ ++   +I N    +C+ GC  I+D+GTS LA P      IN +IGG
Sbjct:   258 VSHRAYWQVKMDSAVIRNLE--LCQQGCEVIIDTGTSFLALPYDQAILINESIGG 310

GO:0004190 "aspartic-type endopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|P43159 CTSE "Cathepsin E" [Oryctolagus cuniculus (taxid:9986)]

 Score = 380 (138.8 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
 Identities = 83/219 (37%), Positives = 118/219 (53%)

Query:    16 ISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQXXXXXXX 71
             +S +  +P+V    P    H Q   S     S  G    I YG+GS++G           
Sbjct:    98 VSSNLWVPSVYCTSPACQMHPQFRPSQSNTYSEVGTPFSIAYGTGSLTGIIGADQVSVQG 157

Query:    72 XXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSF 131
                    F E+ +E   TF+ A FDGI+GLG+  +A G   PV+DNM+ Q LVS  +FS 
Sbjct:   158 LTVVGQQFGESVKEPGQTFVNAEFDGILGLGYPSLAAGGVTPVFDNMMAQNLVSLPMFSV 217

Query:   132 WLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGC 191
             +++ +P+   G E+ FGG D  HF G   +VPVTK+GYWQ  L +I +G  S   C  GC
Sbjct:   218 YMSSNPEGGSGSELTFGGYDSSHFSGSLNWVPVTKQGYWQIALDEIQVGG-SPMFCPEGC 276

Query:   192 AAIVDSGTSLLAGPTPVVTEINHAIGG---EGVVSAECK 227
              AIVD+GTSL+ GP+  + ++  AIG    +G  + EC+
Sbjct:   277 QAIVDTGTSLITGPSDKIIQLQAAIGATPMDGEYAVECE 315

GO:0004190 "aspartic-type endopeptidase activity" evidence=ISS

GO:0005768 "endosome" evidence=ISS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O65390	APA1_ARATH	3, ., 4, ., 2, 3, ., -	0.6549	0.8932	0.7272	yes	no
P42211	ASPRX_ORYSJ	3, ., 4, ., 2, 3, ., -	0.6485	0.8859	0.7358	yes	no
P40782	CYPR1_CYNCA	3, ., 4, ., 2, 3, ., -	0.6041	0.9296	0.8097	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.23	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XIII0008 hypothetical protein (507 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	412
cd06098	317	cd06098, phytepsin, Phytepsin, a plant homolog of	1e-122
cd05485	329	cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi	8e-67
pfam00026	316	pfam00026, Asp, Eukaryotic aspartyl protease	5e-66
cd05490	325	cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family	6e-62
cd05471	283	cd05471, pepsin_like, Pepsin-like aspartic proteas	1e-58
cd05478	317	cd05478, pepsin_A, Pepsin A, aspartic protease pro	2e-54
cd05488	320	cd05488, Proteinase_A_fungi, Fungal Proteinase A ,	3e-54
cd06098	317	cd06098, phytepsin, Phytepsin, a plant homolog of	2e-51
cd05486	316	cd05486, Cathespin_E, Cathepsin E, non-lysosomal a	1e-50
cd05487	326	cd05487, renin_like, Renin stimulates production o	2e-50
cd05477	318	cd05477, gastricsin, Gastricsins, asparate proteas	3e-48
cd05490	325	cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family	5e-36
cd05485	329	cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi	1e-32
PTZ00165	482	PTZ00165, PTZ00165, aspartyl protease; Provisional	2e-29
pfam00026	316	pfam00026, Asp, Eukaryotic aspartyl protease	7e-25
cd05486	316	cd05486, Cathespin_E, Cathepsin E, non-lysosomal a	1e-24
PTZ00147	453	PTZ00147, PTZ00147, plasmepsin-1; Provisional	1e-21
cd05487	326	cd05487, renin_like, Renin stimulates production o	2e-21
PTZ00013	450	PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisiona	4e-20
cd05488	320	cd05488, Proteinase_A_fungi, Fungal Proteinase A ,	1e-19
cd05474	295	cd05474, SAP_like, SAPs, pepsin-like proteinases s	9e-19
cd06097	278	cd06097, Aspergillopepsin_like, Aspergillopepsin_l	1e-18
PTZ00165	482	PTZ00165, PTZ00165, aspartyl protease; Provisional	5e-17
cd05473	364	cd05473, beta_secretase_like, Beta-secretase, aspa	9e-17
cd05478	317	cd05478, pepsin_A, Pepsin A, aspartic protease pro	1e-14
cd05477	318	cd05477, gastricsin, Gastricsins, asparate proteas	2e-14
pfam03489	35	pfam03489, SapB_2, Saposin-like type B, region 2	3e-11
pfam05184	39	pfam05184, SapB_1, Saposin-like type B, region 1	1e-10
cd05470	109	cd05470, pepsin_retropepsin_like, Cellular and ret	5e-10
cd06096	326	cd06096, Plasmepsin_5, Plasmepsins are a class of	3e-09
smart00741	76	smart00741, SapB, Saposin (B) Domains	2e-08
PTZ00147	453	PTZ00147, PTZ00147, plasmepsin-1; Provisional	1e-06
cd05471	283	cd05471, pepsin_like, Pepsin-like aspartic proteas	2e-06
smart00741	76	smart00741, SapB, Saposin (B) Domains	4e-04
cd05476	265	cd05476, pepsin_A_like_plant, Chroloplast Nucleoid	4e-04
PTZ00013	450	PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisiona	5e-04

>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins

 Score =  357 bits (919), Expect = e-122
 Identities = 134/171 (78%), Positives = 153/171 (89%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G S  I YG+GSISGFFSQD+V VGD+VVK+QVFIEAT+E  LTFLLA+FDGI+GLGF+E
Sbjct: 66  GTSASIQYGTGSISGFFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQE 125

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           I+VG AVPVW NMVEQGLV E VFSFWLNR+PD EEGGE+VFGGVDPKHFKG+HTYVPVT
Sbjct: 126 ISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVT 185

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAI 216
           +KGYWQFE+GD+LIG +STG C GGCAAI DSGTSLLAGPT +VT+IN A+
Sbjct: 186 RKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQINSAV 236

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317

>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases

 Score =  215 bits (549), Expect = 8e-67
 Identities = 96/180 (53%), Positives = 124/180 (68%), Gaps = 2/180 (1%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G    I YGSGS+SGF S D V VG V VK Q F EA  E  LTF+ A+FDGI+G+G+  
Sbjct: 68  GTEFAIQYGSGSLSGFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSS 127

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           I+V   VPV+ NMV Q LV   VFSF+LNRDP A+EGGE++ GG DPKH+ G  TY+PVT
Sbjct: 128 ISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVT 187

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 225
           +KGYWQF++  + +G      C GGC AI D+GTSL+AGP   + ++N+AIG + ++  E
Sbjct: 188 RKGYWQFKMDSVSVGEGE--FCSGGCQAIADTGTSLIAGPVDEIEKLNNAIGAKPIIGGE 245

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank a deep active site cleft. Each of the two related lobes contributes one active site aspartic acid residue and contains a single carbohydrate group. Cathepsin D is an essential enzyme. Mice deficient for proteinase cathepsin D, generated by gene targeting, develop normally during the first 2 weeks, stop thriving in the third week and die in a state of anorexia in the fourth week. The mice develop atrophy of ileal mucosa followed by other degradation of intestinal organs. In these knockout mice, lysosomal proteolysis was normal. These results suggest that vital functions of cathepsin D are exerted by limited proteolysis of proteins regulating cell growth and/or tissue homeostasis, while its contribution to bulk proteolysis in lysosomes appears to be non-critical. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 329

>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease

 Score =  212 bits (543), Expect = 5e-66
 Identities = 88/175 (50%), Positives = 109/175 (62%), Gaps = 5/175 (2%)

Query: 46  GKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
           G +  I+YG GS  SGF  QD V VG + V +Q F  AT+E    F  A FDGI+GLGF 
Sbjct: 57  GTTFSISYGDGSSASGFLGQDTVTVGGITVTNQQFGLATKEPGSFFATAVFDGILGLGFP 116

Query: 105 EI-AVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
            I AVG   PV+DN+  QGL+    FS +LN D     GGEI+FGGVDP  + G  T+VP
Sbjct: 117 SIEAVGTYTPVFDNLKSQGLIDSPAFSVYLNSDD--AGGGEIIFGGVDPSKYTGSLTWVP 174

Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
           VT +GYWQ  L  I +G  S   C  GC AI+D+GTSLL GPT +V++I  A+G 
Sbjct: 175 VTSQGYWQITLDSITVGG-SATFCSSGCQAILDTGTSLLYGPTSIVSKIAKAVGA 228

Aspartyl (acid) proteases include pepsins, cathepsins, and renins. Two-domain structure, probably arising from ancestral duplication. This family does not include the retroviral nor retrotransposon proteases (pfam00077), which are much smaller and appear to be homologous to a single domain of the eukaryotic asp proteases. Length = 316

>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases

 Score =  202 bits (515), Expect = 6e-62
 Identities = 84/173 (48%), Positives = 119/173 (68%), Gaps = 1/173 (0%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G    I YGSGS+SG+ SQD V +G + V+ Q+F EA ++  +TF+ A+FDGI+G+ +  
Sbjct: 63  GTEFAIQYGSGSLSGYLSQDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPR 122

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           I+V    PV+DN++ Q LV + VFSF+LNRDPDA+ GGE++ GG DPK++ G   YV VT
Sbjct: 123 ISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVT 182

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
           +K YWQ  +  + +G+  T +C+GGC AIVD+GTSL+ GP   V  +  AIG 
Sbjct: 183 RKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGA 234

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank a deep active site cleft. Each of the two related lobes contributes one active site aspartic acid residue and contains a single carbohydrate group. Cathepsin D is an essential enzyme. Mice deficient for proteinase cathepsin D, generated by gene targeting, develop normally during the first 2 weeks, stop thriving in the third week and die in a state of anorexia in the fourth week. The mice develop atrophy of ileal mucosa followed by other degradation of intestinal organs. In these knockout mice, lysosomal proteolysis was normal. These results suggest that vital functions of cathepsin D are exerted by limited proteolysis of proteins regulating cell growth and/or tissue homeostasis, while its contribution to bulk proteolysis in lysosomes appears to be non-critical. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 325

>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH

 Score =  192 bits (490), Expect = 1e-58
 Identities = 79/193 (40%), Positives = 103/193 (53%), Gaps = 3/193 (1%)

Query: 50  EINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVG 109
            I YG GS++G    D V +G + + +Q F  AT E S  F  + FDGI+GLGF  ++V 
Sbjct: 61  SITYGDGSVTGGLGTDTVTIGGLTIPNQTFGCATSE-SGDFSSSGFDGILGLGFPSLSVD 119

Query: 110 DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTK--K 167
                +D +  QGL+S  VFSF+L RD D   GGE+ FGG+DP  + G  TY PV     
Sbjct: 120 GVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGP 179

Query: 168 GYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECK 227
           GYWQ  L  I +G +S     GG  AIVDSGTSL+  P+ V   I  A+G     S    
Sbjct: 180 GYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSSSDGGY 239

Query: 228 LVVSQYGDLIWDL 240
            V     D + D+
Sbjct: 240 GVDCSPCDTLPDI 252

Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap.The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 283

>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals

 Score =  183 bits (465), Expect = 2e-54
 Identities = 76/184 (41%), Positives = 109/184 (59%), Gaps = 9/184 (4%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G+   I YG+GS++G    D V+VG +   +Q+F  +  E    F  A FDGI+GL +  
Sbjct: 65  GQPLSIQYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPS 124

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           IA   A PV+DNM+ QGLVS+++FS +L+ +   ++G  + FGG+DP ++ G   +VPVT
Sbjct: 125 IASSGATPVFDNMMSQGLVSQDLFSVYLSSNG--QQGSVVTFGGIDPSYYTGSLNWVPVT 182

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG------GE 219
            + YWQ  +  + I  Q    C GGC AIVD+GTSLL GP+  +  I   IG      GE
Sbjct: 183 AETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQNQNGE 241

Query: 220 GVVS 223
            VV+
Sbjct: 242 MVVN 245

Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317

>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily

 Score =  182 bits (463), Expect = 3e-54
 Identities = 83/190 (43%), Positives = 114/190 (60%), Gaps = 8/190 (4%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G   +I YGSGS+ GF SQD + +GD+ +K Q F EAT E  L F   +FDGI+GL +  
Sbjct: 65  GTEFKIQYGSGSLEGFVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDT 124

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           I+V   VP + NM+ QGL+ E VFSF+L      E+GGE  FGG+D   F GK T++PV 
Sbjct: 125 ISVNKIVPPFYNMINQGLLDEPVFSFYLG--SSEEDGGEATFGGIDESRFTGKITWLPVR 182

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE----GV 221
           +K YW+ EL  I +G++     E   AAI D+GTSL+A P+ +   +N  IG +    G 
Sbjct: 183 RKAYWEVELEKIGLGDE-ELELENTGAAI-DTGTSLIALPSDLAEMLNAEIGAKKSWNGQ 240

Query: 222 VSAECKLVVS 231
            + +C  V S
Sbjct: 241 YTVDCSKVDS 250

Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydrolyzes hydrophobic residues such as Phe, Leu or Glu at the P1 position and Phe, Ile, Leu or Ala at P1'. Moreover, the enzyme is inhibited by IA3, a natural and highly specific inhibitor produced by S. cerevisiae. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 320

>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins

 Score =  174 bits (444), Expect = 2e-51
 Identities = 62/84 (73%), Positives = 69/84 (82%)

Query: 327 SIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWI 386
           S +DC+ + +MPNVSFTIG K F L+PEQYILK GEG A  CISGF A D+PPPRGPLWI
Sbjct: 234 SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWI 293

Query: 387 LGDVFMGVYHTVFDSGKLRIGFAE 410
           LGDVFMG YHTVFD G LR+GFAE
Sbjct: 294 LGDVFMGAYHTVFDYGNLRVGFAE 317

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317

>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease

 Score =  172 bits (438), Expect = 1e-50
 Identities = 73/172 (42%), Positives = 110/172 (63%), Gaps = 1/172 (0%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G++  I YG+GS++G    D V V  + V++Q F E+  E   TF  + FDGI+GL +  
Sbjct: 55  GEAFSIQYGTGSLTGIIGIDQVTVEGITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPS 114

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           +AV    PV+DNM+ Q LV   +FS +++R+P++ +GGE+VFGG D   F G+  +VPVT
Sbjct: 115 LAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVT 174

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 217
            +GYWQ +L +I +G      C  GC AIVD+GTSL+ GP+  + ++ + IG
Sbjct: 175 VQGYWQIQLDNIQVGGT-VIFCSDGCQAIVDTGTSLITGPSGDIKQLQNYIG 225

Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal lobes of the enzyme. The aspartic acid residues act together to allow a water molecule to attack the peptide bond. One aspartic acid residue (in its deprotonated form) activates the attacking water molecule, whereas the other aspartic acid residue (in its protonated form) polarizes the peptide carbonyl, increasing its susceptibility to attack. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 316

>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure

 Score =  172 bits (437), Expect = 2e-50
 Identities = 78/189 (41%), Positives = 123/189 (65%), Gaps = 9/189 (4%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G    I+Y SG++ GF SQD V VG + V  Q+F E T   ++ F+LA+FDG++G+G+ +
Sbjct: 65  GTEFTIHYASGTVKGFLSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPK 123

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
            A+G   PV+DN++ QG++ E+VFS + +RD     GGEIV GG DP+H++G   Y+  +
Sbjct: 124 QAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTS 183

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG-----GEG 220
           K G+WQ ++  + +G+ ST +CE GC A+VD+G S ++GPT  ++++  A+G     G+ 
Sbjct: 184 KTGFWQIQMKGVSVGS-STLLCEDGCTAVVDTGASFISGPTSSISKLMEALGAKERLGDY 242

Query: 221 VVSAECKLV 229
           VV   C  V
Sbjct: 243 VVK--CNEV 249

Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 326

>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa

 Score =  166 bits (422), Expect = 3e-48
 Identities = 70/177 (39%), Positives = 106/177 (59%), Gaps = 1/177 (0%)

Query: 43  SIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLG 102
           S  G++  + YGSGS++G F  D V V  +++ +Q F  +  E    F+ A+FDGI+GL 
Sbjct: 55  STNGETFSLQYGSGSLTGIFGYDTVTVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLA 114

Query: 103 FREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYV 162
           +  I+ G A  V   M++Q L+   +FSF+L+     ++GGE+VFGGVD   + G+  + 
Sbjct: 115 YPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQ-QGQQGGELVFGGVDNNLYTGQIYWT 173

Query: 163 PVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 219
           PVT + YWQ  +    I  Q+TG C  GC AIVD+GTSLL  P  V++ +  +IG +
Sbjct: 174 PVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQ 230

Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more divergent, except for the conserved catalytic site motif. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 318

>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases

 Score =  134 bits (338), Expect = 5e-36
 Identities = 49/92 (53%), Positives = 69/92 (75%)

Query: 319 SLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLP 378
           ++P   GE +IDC++IPT+P +SF++G K++ L+ E YILK  +    +C+SGFM  D+P
Sbjct: 234 AVPLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIP 293

Query: 379 PPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 410
           PP GPLWILGDVF+G Y+TVFD    R+GFA+
Sbjct: 294 PPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank a deep active site cleft. Each of the two related lobes contributes one active site aspartic acid residue and contains a single carbohydrate group. Cathepsin D is an essential enzyme. Mice deficient for proteinase cathepsin D, generated by gene targeting, develop normally during the first 2 weeks, stop thriving in the third week and die in a state of anorexia in the fourth week. The mice develop atrophy of ileal mucosa followed by other degradation of intestinal organs. In these knockout mice, lysosomal proteolysis was normal. These results suggest that vital functions of cathepsin D are exerted by limited proteolysis of proteins regulating cell growth and/or tissue homeostasis, while its contribution to bulk proteolysis in lysosomes appears to be non-critical. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 325

>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases

 Score =  124 bits (314), Expect = 1e-32
 Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 2/135 (1%)

Query: 276 ENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIP 335
           ++VS G+   CS    A+      L      E  +  +N    + P   GE +++C  IP
Sbjct: 197 DSVSVGEGEFCSGGCQAIADTGTSLIAGPVDE--IEKLNNAIGAKPIIGGEYMVNCSAIP 254

Query: 336 TMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY 395
           ++P+++F +G K F+L+ + Y+LK  +    +C+SGFM  D+PPP GPLWILGDVF+G Y
Sbjct: 255 SLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKY 314

Query: 396 HTVFDSGKLRIGFAE 410
           +T FD G  R+GFA 
Sbjct: 315 YTEFDLGNNRVGFAT 329

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank a deep active site cleft. Each of the two related lobes contributes one active site aspartic acid residue and contains a single carbohydrate group. Cathepsin D is an essential enzyme. Mice deficient for proteinase cathepsin D, generated by gene targeting, develop normally during the first 2 weeks, stop thriving in the third week and die in a state of anorexia in the fourth week. The mice develop atrophy of ileal mucosa followed by other degradation of intestinal organs. In these knockout mice, lysosomal proteolysis was normal. These results suggest that vital functions of cathepsin D are exerted by limited proteolysis of proteins regulating cell growth and/or tissue homeostasis, while its contribution to bulk proteolysis in lysosomes appears to be non-critical. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 329

>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional

 Score =  118 bits (298), Expect = 2e-29
 Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 7/164 (4%)

Query: 51  INYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGD 110
           I YG+G       +D V++G + VK Q    A  E    F    FDG++GLGF +    +
Sbjct: 185 IQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKE 244

Query: 111 ---AVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKH-FKG-KHTYVPVT 165
              A+P+ DN+ +Q L+   +FSF++++D    + G I FG  DPK+  +G K  + PV 
Sbjct: 245 SKKALPIVDNIKKQNLLKRNIFSFYMSKD--LNQPGSISFGSADPKYTLEGHKIWWFPVI 302

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 209
              YW+ E+ DILI  +S G C+  C A +D+G+SL+ GP+ V+
Sbjct: 303 STDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVI 346

Length = 482

>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease

 Score =  103 bits (259), Expect = 7e-25
 Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 321 PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 380
            +  G  ++DCD I ++P+V+F IG     + P  Y+L+   G +  C+SGF       P
Sbjct: 230 LSEYGGYVVDCDSISSLPDVTFFIGGAKITVPPSDYVLQPSSGGSSTCLSGFQ----SSP 285

Query: 381 RGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
            GPLWILGDVF+   + VFD    RIGFA A
Sbjct: 286 GGPLWILGDVFLRSAYVVFDRDNNRIGFAPA 316

Aspartyl (acid) proteases include pepsins, cathepsins, and renins. Two-domain structure, probably arising from ancestral duplication. This family does not include the retroviral nor retrotransposon proteases (pfam00077), which are much smaller and appear to be homologous to a single domain of the eukaryotic asp proteases. Length = 316

>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease

 Score =  103 bits (257), Expect = 1e-24
 Identities = 42/85 (49%), Positives = 55/85 (64%)

Query: 325 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPL 384
           GE  +DC  +  MP+V+FTI    ++LSP+ Y L+        C SGF   D+PPP GPL
Sbjct: 231 GEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPL 290

Query: 385 WILGDVFMGVYHTVFDSGKLRIGFA 409
           WILGDVF+  Y++VFD G  R+GFA
Sbjct: 291 WILGDVFIRQYYSVFDRGNNRVGFA 315

Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal lobes of the enzyme. The aspartic acid residues act together to allow a water molecule to attack the peptide bond. One aspartic acid residue (in its deprotonated form) activates the attacking water molecule, whereas the other aspartic acid residue (in its protonated form) polarizes the peptide carbonyl, increasing its susceptibility to attack. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 316

>gnl|CDD|140176 PTZ00147, PTZ00147, plasmepsin-1; Provisional

 Score = 96.1 bits (239), Expect = 1e-21
 Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 10/163 (6%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSL--TFLLARFDGIIGLGF 103
           G   E+NY SG++SGFFS+D V +G++ V  + FIE T        +  + FDGI GLG+
Sbjct: 194 GTKVEMNYVSGTVSGFFSKDLVTIGNLSVPYK-FIEVTDTNGFEPFYTESDFDGIFGLGW 252

Query: 104 REIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
           +++++G   P    +  Q  + + VF+F+L   P+ +  G +  GG++ + ++G  TY  
Sbjct: 253 KDLSIGSVDPYVVELKNQNKIEQAVFTFYL--PPEDKHKGYLTIGGIEERFYEGPLTYEK 310

Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 206
           +    YWQ +L D+  GN    V       IVDSGTS++  PT
Sbjct: 311 LNHDLYWQVDL-DVHFGN----VSSEKANVIVDSGTSVITVPT 348

Length = 453

>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure

 Score = 94.1 bits (234), Expect = 2e-21
 Identities = 36/87 (41%), Positives = 56/87 (64%)

Query: 325 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPL 384
           G+ ++ C+ +PT+P++SF +G K + LS   Y+L+  +   ++C   F A D+PPP GPL
Sbjct: 240 GDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPL 299

Query: 385 WILGDVFMGVYHTVFDSGKLRIGFAEA 411
           W+LG  F+  ++T FD    RIGFA A
Sbjct: 300 WVLGATFIRKFYTEFDRQNNRIGFALA 326

Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 326

>gnl|CDD|140051 PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisional

 Score = 91.6 bits (227), Expect = 4e-20
 Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 12/164 (7%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSL--TFLLARFDGIIGLGF 103
           G   +I YGSG++ GFFS+D V +G + +  + FIE T    L   +  + FDGI+GLG+
Sbjct: 193 GTKVDITYGSGTVKGFFSKDLVTLGHLSMPYK-FIEVTDTDDLEPIYSSSEFDGILGLGW 251

Query: 104 REIAVGDAVPVWDNMVEQGLVSEEVFSFWLN-RDPDAEEGGEIVFGGVDPKHFKGKHTYV 162
           +++++G   P+   +  Q  +   +F+F+L   D  A   G +  GG++ K ++G  TY 
Sbjct: 252 KDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHA---GYLTIGGIEEKFYEGNITYE 308

Query: 163 PVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 206
            +    YWQ +L D+  G Q+          IVDSGT+ +  P+
Sbjct: 309 KLNHDLYWQIDL-DVHFGKQTMQKAN----VIVDSGTTTITAPS 347

Length = 450

>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily

 Score = 88.6 bits (220), Expect = 1e-19
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 325 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPL 384
           G+  +DC ++ ++P+++F      F L P  Y L+    ++  CIS F   D P P GPL
Sbjct: 239 GQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLE----VSGSCISAFTGMDFPEPVGPL 294

Query: 385 WILGDVFMGVYHTVFDSGKLRIGFAE 410
            I+GD F+  Y++V+D G   +G A+
Sbjct: 295 AIVGDAFLRKYYSVYDLGNNAVGLAK 320

Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydrolyzes hydrophobic residues such as Phe, Leu or Glu at the P1 position and Phe, Ile, Leu or Ala at P1'. Moreover, the enzyme is inhibited by IA3, a natural and highly specific inhibitor produced by S. cerevisiae. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 320

>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins

 Score = 85.7 bits (213), Expect = 9e-19
 Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 23/182 (12%)

Query: 51  INYGSGS-ISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREI-AV 108
           I+YG G+  SG +  D V +G   VK+  F  A    S         G++G+G     A 
Sbjct: 34  ISYGDGTSASGTWGTDTVSIGGATVKNLQFAVANSTSSDV-------GVLGIGLPGNEAT 86

Query: 109 GDAVPVWDN----MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV 164
                 + N    + +QGL+ +  +S +LN D DA  G  I+FGGVD   + G    +P+
Sbjct: 87  YGTGYTYPNFPIALKKQGLIKKNAYSLYLN-DLDASTG-SILFGGVDTAKYSGDLVTLPI 144

Query: 165 TKKGYW----QFE--LGDILIGNQS--TGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAI 216
                     +    L  I +   S  T +      A++DSGT+L   P+ +V  I   +
Sbjct: 145 VNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQL 204

Query: 217 GG 218
           G 
Sbjct: 205 GA 206

SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). The overall structure of Sap protein conforms to the classical aspartic proteinase fold typified by pepsin. SAP is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 295

>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin

 Score = 85.0 bits (211), Expect = 1e-18
 Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 12/181 (6%)

Query: 43  SIRGKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGL 101
            + G +  I+YG GS  SG    D V +G V V +Q    AT   +  F     DG++GL
Sbjct: 53  LLPGATWSISYGDGSSASGIVYTDTVSIGGVEVPNQAIELATAVSASFFSDTASDGLLGL 112

Query: 102 GF---REIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGK 158
            F     +        ++N +        +F+  L +       G   FG +D   +KG+
Sbjct: 113 AFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFYTFGYIDESKYKGE 166

Query: 159 HTYVPVTK-KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 217
            ++ PV    G+WQF      +G  +      G +AI D+GT+L+  P  +V      + 
Sbjct: 167 ISWTPVDNSSGFWQFTSTSYTVGGDAP-WSRSGFSAIADTGTTLILLPDAIVEAYYSQVP 225

Query: 218 G 218
           G
Sbjct: 226 G 226

The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-site cleft capable of interacting with multiple residues of a substrate. Although members of the aspartic protease family of enzymes have very similar three-dimensional structures and catalytic mechanisms, each has unique substrate specificity. The members of this family has an optimal acidic pH (5.5) and cleaves protein substrates with similar specificity to that of porcine pepsin A, preferring hydrophobic residues at P1 and P1' in the cleave site. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 278

>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional

 Score = 82.5 bits (204), Expect = 5e-17
 Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 12/109 (11%)

Query: 311 SYINELCDSLPNPMGESIIDCDRIPTMPNVSFTI----GDKI-FNLSPEQYILKTG--EG 363
           S IN L + +P  + E   DC    ++P +SF +    G KI F++ PE Y+++ G  E 
Sbjct: 344 SVINPLLEKIP--LEE---DCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEE 398

Query: 364 IAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
               C+ G +  D+P PRGPL++LG+ F+  Y+++FD   + +G   A 
Sbjct: 399 QEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAK 447

Length = 482

>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease

 Score = 80.9 bits (200), Expect = 9e-17
 Identities = 57/188 (30%), Positives = 87/188 (46%), Gaps = 21/188 (11%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVV-VKDQVFIEATREGSLTFLL-ARFDGIIGLGF 103
           GK   + Y  GS  G    D V +     V  +  I A  E    FL  + ++GI+GL +
Sbjct: 54  GKGVTVPYTQGSWEGELGTDLVSIPKGPNVTFRANIAAITESENFFLNGSNWEGILGLAY 113

Query: 104 REIAVGDAV--PVWDNMVEQGLVSEEVFSFWL-------NRDPDAEEGGEIVFGGVDPKH 154
            E+A  D+   P +D++V+Q  +  +VFS  +       N       GG +V GG+DP  
Sbjct: 114 AELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSL 172

Query: 155 FKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGC------AAIVDSGTSLLAGPTPV 208
           +KG   Y P+ ++ Y++  +  + +G QS  +    C       AIVDSGT+ L  P  V
Sbjct: 173 YKGDIWYTPIREEWYYEVIILKLEVGGQSLNL---DCKEYNYDKAIVDSGTTNLRLPVKV 229

Query: 209 VTEINHAI 216
                 AI
Sbjct: 230 FNAAVDAI 237

Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 364

>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 8/88 (9%)

Query: 322 NPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR 381
           N  GE +++C  I +MP+V FTI    + L P  YIL+        C SGF +  L    
Sbjct: 237 NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQDQGS----CTSGFQSMGL---- 288

Query: 382 GPLWILGDVFMGVYHTVFDSGKLRIGFA 409
           G LWILGDVF+  Y++VFD    ++G A
Sbjct: 289 GELWILGDVFIRQYYSVFDRANNKVGLA 316

Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317

>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa

 Score = 73.8 bits (181), Expect = 2e-14
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 5/88 (5%)

Query: 325 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRG-P 383
           G+ +++C+ I  +P ++FTI    F L P  YIL+        C  G     LP   G P
Sbjct: 235 GQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQP 290

Query: 384 LWILGDVFMGVYHTVFDSGKLRIGFAEA 411
           LWILGDVF+  Y++V+D G  ++GFA A
Sbjct: 291 LWILGDVFLRQYYSVYDLGNNQVGFATA 318

Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more divergent, except for the conserved catalytic site motif. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 318

>gnl|CDD|112314 pfam03489, SapB_2, Saposin-like type B, region 2

 Score = 57.2 bits (139), Expect = 3e-11
 Identities = 23/35 (65%), Positives = 27/35 (77%)

Query: 223 SAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 257
           S +CK  V QYG LI DLLVSGL P++VC Q+GLC
Sbjct: 1   SDQCKQFVDQYGPLIIDLLVSGLDPKEVCSQLGLC 35

Length = 35

>gnl|CDD|191220 pfam05184, SapB_1, Saposin-like type B, region 1

 Score = 55.7 bits (135), Expect = 1e-10
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 283 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 321
             +C  CE  V  V+  LK  +T+E+++  + ++CD LP
Sbjct: 1   GDLCDLCEFLVKEVEKLLKDNKTEEEIIEALEKVCDLLP 39

Length = 39

>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 30/59 (50%), Positives = 36/59 (61%)

Query: 43  SIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGL 101
           S  G +  I YG+GS+SG  S D V +GD+ V  Q F  AT E   TFL A FDGI+GL
Sbjct: 51  SDNGCTFSITYGTGSLSGGLSTDTVSIGDIEVVGQAFGCATDEPGATFLPALFDGILGL 109

This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site ASP residues with each N- and C-terminal lobe contributing one residue. While the fungal and mammalian pepsins are bilobal proteins, retropepsins function as dimers and the monomer resembles structure of the N- or C-terminal domains of eukaryotic enzyme. The active site motif (Asp-Thr/Ser-Gly-Ser) is conserved between the retroviral and eukaryotic proteases and between the N-and C-terminal of eukaryotic pepsin-like proteases. The retropepsin-like family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements; as well as eukaryotic DNA-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. Retropepsin is synthesized as part of the POL polyprotein that contains an aspartyl-protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A) and A2 (retropepsin family). Length = 109

>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 31/179 (17%)

Query: 46  GKSCE--INYGSGS-ISGFFSQDNVEVGD-------VVVKDQVFIEATREGSLTFLLARF 95
              CE  I+Y  GS ISGF+  D V                ++F   T E +L FL  + 
Sbjct: 72  NNKCEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNL-FLTQQA 130

Query: 96  DGIIGLGFREIAVGDAVPVWDNMVEQGLV--SEEVFSFWLNRDPDAEEGGEIVFGGVDPK 153
            GI+GL       G   P+   +  +      +++FS  L+ D     GGE+  GG D  
Sbjct: 131 TGILGLS-LTKNNGLPTPI-ILLFTKRPKLKKDKIFSICLSED-----GGELTIGGYDKD 183

Query: 154 HFKG----------KHTYVPVTKKGYWQFELGDILIGNQSTGVC-EGGCAAIVDSGTSL 201
           +             K  + P+T+K Y+  +L  + +   ++      G   +VDSG++L
Sbjct: 184 YTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTL 242

The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal lobes of the enzyme. There are four types of plasmepsins, closely related but varying in the specificity of cleavage site. The name plasmepsin may come from plasmodium (the organism) and pepsin (a common aspartic acid protease with similar molecular structure). This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 326

>gnl|CDD|214797 smart00741, SapB, Saposin (B) Domains

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 222 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 257
           +S +CK  V QYG  I DLL  GL P+ VCQ++GLC
Sbjct: 41  LSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76

Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present. Length = 76

>gnl|CDD|140176 PTZ00147, PTZ00147, plasmepsin-1; Provisional

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 335 PTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGV 394
             +P + F   +K++ L PE Y+    +  + +C+   +  DL       +ILGD FM  
Sbjct: 376 TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLNIIPIDLEKNT---FILGDPFMRK 432

Query: 395 YHTVFDSGKLRIGFAEA 411
           Y TVFD     +GFA A
Sbjct: 433 YFTVFDYDNHTVGFALA 449

Length = 453

>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 42/103 (40%)

Query: 307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 366
           + +L  +     ++ +  G   +DC    T+P+++FT                       
Sbjct: 222 DAILKALG---AAVSSSDGGYGVDCSPCDTLPDITFTF---------------------- 256

Query: 367 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 409
                            LWILGDVF+  Y+TVFD    RIGFA
Sbjct: 257 -----------------LWILGDVFLRNYYTVFDLDNNRIGFA 282

Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap.The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 283

>gnl|CDD|214797 smart00741, SapB, Saposin (B) Domains

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 285 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGE 326
           +C  CE  V  ++N LK  +T+E++   + ++C  LP  + +
Sbjct: 2   LCELCEFVVKQLENLLKDNKTEEEIKKALEKVCKKLPKSLSD 43

Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present. Length = 76

>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 41/178 (23%), Positives = 58/178 (32%), Gaps = 35/178 (19%)

Query: 53  YGSGS-ISGFFSQDNVEVGDVVVKDQVFI----EATREGSLTFLLARFDGIIGLGFREIA 107
           YG GS  SG  + +    GD  V               GS        DGI+GLG   ++
Sbjct: 37  YGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEGGSF----GGADGILGLGRGPLS 92

Query: 108 VGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP-VTK 166
           +          V Q   +   FS+ L    D      ++ G            Y P V  
Sbjct: 93  L----------VSQLGSTGNKFSYCLVPHDDTGGSSPLILGD-AADLGGSGVVYTPLVKN 141

Query: 167 KGYWQF---ELGDILIGNQSTGVCEGGCAA--------IVDSGTSL--LAGPT-PVVT 210
                +    L  I +G +   +     A         I+DSGT+L  L  P  P +T
Sbjct: 142 PANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAYPDLT 199

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265

>gnl|CDD|140051 PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisional

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 328 IIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWIL 387
           +  CD    MP + F   +  + L PE Y+    +    +C+   +  D+       +IL
Sbjct: 369 VTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMITMLPVDID---DNTFIL 424

Query: 388 GDVFMGVYHTVFDSGKLRIGFAEA 411
           GD FM  Y TVFD  K  +GFA A
Sbjct: 425 GDPFMRKYFTVFDYDKESVGFAIA 448

Length = 450

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	412
cd05486	316	Cathespin_E Cathepsin E, non-lysosomal aspartic pr	100.0
cd05490	325	Cathepsin_D2 Cathepsin_D2, pepsin family of protei	100.0
cd05487	326	renin_like Renin stimulates production of angioten	100.0
cd06098	317	phytepsin Phytepsin, a plant homolog of mammalian	100.0
cd05477	318	gastricsin Gastricsins, asparate proteases produce	100.0
PTZ00165	482	aspartyl protease; Provisional	100.0
cd05485	329	Cathepsin_D_like Cathepsin_D_like, pepsin family o	100.0
cd05478	317	pepsin_A Pepsin A, aspartic protease produced in g	100.0
cd05488	320	Proteinase_A_fungi Fungal Proteinase A , aspartic	100.0
PTZ00147	453	plasmepsin-1; Provisional	100.0
PTZ00013	450	plasmepsin 4 (PM4); Provisional	100.0
PF00026	317	Asp: Eukaryotic aspartyl protease The Prosite entr	100.0
cd06097	278	Aspergillopepsin_like Aspergillopepsin_like, aspar	100.0
cd05473	364	beta_secretase_like Beta-secretase, aspartic-acid	100.0
cd05474	295	SAP_like SAPs, pepsin-like proteinases secreted fr	100.0
cd06096	326	Plasmepsin_5 Plasmepsins are a class of aspartic p	100.0
cd05472	299	cnd41_like Chloroplast Nucleoids DNA-binding Prote	100.0
KOG1339	398	consensus Aspartyl protease [Posttranslational mod	100.0
cd05471	283	pepsin_like Pepsin-like aspartic proteases, biloba	100.0
cd05476	265	pepsin_A_like_plant Chroloplast Nucleoids DNA-bind	100.0
cd05475	273	nucellin_like Nucellins, plant aspartic proteases	100.0
PLN03146	431	aspartyl protease family protein; Provisional	100.0
cd05489	362	xylanase_inhibitor_I_like TAXI-I inhibits degradat	100.0
PF14541	161	TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D	99.69
cd05470	109	pepsin_retropepsin_like Cellular and retroviral pe	99.66
PF14543	164	TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A	99.65
PF05184	39	SapB_1: Saposin-like type B, region 1; InterPro: I	98.16
PF03489	35	SapB_2: Saposin-like type B, region 2; InterPro: I	98.01
KOG1340	218	consensus Prosaposin [Lipid transport and metaboli	96.97
smart00741	76	SapB Saposin (B) Domains. Present in multiple copi	95.65
smart00741	76	SapB Saposin (B) Domains. Present in multiple copi	94.72
cd05483	96	retropepsin_like_bacteria Bacterial aspartate prot	94.01
cd05479	124	RP_DDI RP_DDI; retropepsin-like domain of DNA dama	91.77
TIGR02281	121	clan_AA_DTGA clan AA aspartic protease, TIGR02281	91.12
KOG1340	218	consensus Prosaposin [Lipid transport and metaboli	90.5
PF08284	135	RVP_2: Retroviral aspartyl protease; InterPro: IPR	85.6
PF13650	90	Asp_protease_2: Aspartyl protease	81.22

>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease

Probab=100.00  E-value=8.9e-56  Score=438.62  Aligned_cols=306  Identities=39%  Similarity=0.742  Sum_probs=271.4

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+.+..||||+++||++.    ..|..|+.|+|++|+|++..++++++.|++|++.|.+++|+|++++..+.++
T Consensus         7 iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig~~~~~~~   86 (316)
T cd05486           7 IGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVEGITVQNQ   86 (316)
T ss_pred             ECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEECCEEEcCE
Confidence            689999999999999999999986    2588899999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145           78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG  157 (412)
Q Consensus        78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g  157 (412)
                      .||++..+.+..|....++||||||++..+..+..|++++|++||+|++++||+||.+.++....|+|+|||+|++++.|
T Consensus        87 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g  166 (316)
T cd05486          87 QFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSG  166 (316)
T ss_pred             EEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHccc
Confidence            99998877655566667899999999988766778899999999999999999999976544458999999999999999


Q ss_pred             CceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhH
Q 015145          158 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLI  237 (412)
Q Consensus       158 ~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  237 (412)
                      ++.|+|+.+..+|.|.+++|+|+++.+. +.....++|||||+++++|.++++++.+.+++.                  
T Consensus       167 ~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~------------------  227 (316)
T cd05486         167 QLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGAT------------------  227 (316)
T ss_pred             ceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCc------------------
Confidence            9999999999999999999999998764 345678999999999999999999998888543                  


Q ss_pred             HHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhc
Q 015145          238 WDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELC  317 (412)
Q Consensus       238 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c  317 (412)
                                                                                                      
T Consensus       228 --------------------------------------------------------------------------------  227 (316)
T cd05486         228 --------------------------------------------------------------------------------  227 (316)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEE
Q 015145          318 DSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHT  397 (412)
Q Consensus       318 ~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yv  397 (412)
                          ...+.|.+||+....+|+|+|+|+|+.++|+|++|++.....+..+|+++|+..+..+..++.||||++|||++|+
T Consensus       228 ----~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~  303 (316)
T cd05486         228 ----ATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYS  303 (316)
T ss_pred             ----ccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEE
Confidence                1135688999988889999999999999999999998754334568999998776544455689999999999999


Q ss_pred             EEeCCCCeEEEEe
Q 015145          398 VFDSGKLRIGFAE  410 (412)
Q Consensus       398 vfD~e~~rIGfa~  410 (412)
                      |||.+++|||||+
T Consensus       304 vfD~~~~~IGfA~  316 (316)
T cd05486         304 VFDRGNNRVGFAP  316 (316)
T ss_pred             EEeCCCCEeeccC
Confidence            9999999999996

Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt

>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases

Probab=100.00  E-value=2.2e-55  Score=437.18  Aligned_cols=307  Identities=45%  Similarity=0.862  Sum_probs=270.5

Q ss_pred             cccccceeeecCccCccceEEecC------CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEe
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV------PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVK   75 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~------~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~   75 (412)
                      +|||+|.+.+..||||+++||++.      ..|..|+.|+|++|+|++..++++.+.|++|++.|++++|+|++++..+.
T Consensus        13 iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~~D~v~~g~~~~~   92 (325)
T cd05490          13 IGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLSQDTVSIGGLQVE   92 (325)
T ss_pred             ECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEeeeEEEECCEEEc
Confidence            689999999999999999999975      25778899999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145           76 DQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF  155 (412)
Q Consensus        76 ~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~  155 (412)
                      ++.||++....+..|....++||||||++..+.....|++++|++||+|.+++||+||.+.++....|+|+|||+|++++
T Consensus        93 ~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~  172 (325)
T cd05490          93 GQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYY  172 (325)
T ss_pred             CEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHc
Confidence            99999998876555655678999999999887767788999999999999999999998764444579999999999999


Q ss_pred             ecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchh
Q 015145          156 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGD  235 (412)
Q Consensus       156 ~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  235 (412)
                      .|++.|+|+.+..+|.|++++|+|++... .+.....++|||||+++++|.+++++|.+++++.                
T Consensus       173 ~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----------------  235 (325)
T cd05490         173 TGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV----------------  235 (325)
T ss_pred             CCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCc----------------
Confidence            99999999999999999999999988743 2345678999999999999999999999988543                


Q ss_pred             hHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhh
Q 015145          236 LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINE  315 (412)
Q Consensus       236 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~  315 (412)
                                                                                                      
T Consensus       236 --------------------------------------------------------------------------------  235 (325)
T cd05490         236 --------------------------------------------------------------------------------  235 (325)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccce
Q 015145          316 LCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY  395 (412)
Q Consensus       316 ~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~  395 (412)
                           +...+.|.++|+....+|+|+|.|+|+.|+|+|++|+++........|++.|+..+.++...+.||||++|||++
T Consensus       236 -----~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~  310 (325)
T cd05490         236 -----PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRY  310 (325)
T ss_pred             -----cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheee
Confidence                 112356889999888899999999999999999999997654445689999987765444567899999999999


Q ss_pred             EEEEeCCCCeEEEEe
Q 015145          396 HTVFDSGKLRIGFAE  410 (412)
Q Consensus       396 yvvfD~e~~rIGfa~  410 (412)
                      |+|||++++|||||+
T Consensus       311 y~vfD~~~~~IGfA~  325 (325)
T cd05490         311 YTVFDRDNDRVGFAK  325 (325)
T ss_pred             EEEEEcCCcEeeccC
Confidence            999999999999996

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank

>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure

Probab=100.00  E-value=2.1e-54  Score=430.72  Aligned_cols=306  Identities=37%  Similarity=0.759  Sum_probs=270.0

Q ss_pred             cccccceeeecCccCccceEEecC------CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEe
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV------PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVK   75 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~------~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~   75 (412)
                      +|||+|.+....||||+++||++.      ..|..|..|+|++|+|++..++.+++.|++|++.|.+++|+|++++..+.
T Consensus        15 iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~~~~D~v~~g~~~~~   94 (326)
T cd05487          15 IGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGFLSQDIVTVGGIPVT   94 (326)
T ss_pred             ECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEEEeeeEEEECCEEee
Confidence            578888888888899999999975      25788999999999999999999999999999999999999999998874


Q ss_pred             eeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145           76 DQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF  155 (412)
Q Consensus        76 ~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~  155 (412)
                       +.||++.......+....++||||||+++.+..+..|++++|++||+|++++||+||.+.++....|+|+|||+|++++
T Consensus        95 -~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y  173 (326)
T cd05487          95 -QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHY  173 (326)
T ss_pred             -EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhc
Confidence             7899998765444555678999999998877667889999999999999999999998765445589999999999999


Q ss_pred             ecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchh
Q 015145          156 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGD  235 (412)
Q Consensus       156 ~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  235 (412)
                      .|+++|+|+.+..+|.|+++++++++..+. +..+..++|||||+++++|.++++++.+++++..               
T Consensus       174 ~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~---------------  237 (326)
T cd05487         174 QGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAKE---------------  237 (326)
T ss_pred             cCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCcc---------------
Confidence            999999999999999999999999998864 3456789999999999999999999999987551               


Q ss_pred             hHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhh
Q 015145          236 LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINE  315 (412)
Q Consensus       236 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~  315 (412)
                                                                                                      
T Consensus       238 --------------------------------------------------------------------------------  237 (326)
T cd05487         238 --------------------------------------------------------------------------------  237 (326)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccce
Q 015145          316 LCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY  395 (412)
Q Consensus       316 ~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~  395 (412)
                             ..+.|.+||+....+|+|+|+|++++|+|+|++|+++..+...+.|++.|+..+.++..++.||||++|||++
T Consensus       238 -------~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~  310 (326)
T cd05487         238 -------RLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKF  310 (326)
T ss_pred             -------cCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhcc
Confidence                   1346889999988899999999999999999999998765566789999998765444557899999999999


Q ss_pred             EEEEeCCCCeEEEEec
Q 015145          396 HTVFDSGKLRIGFAEA  411 (412)
Q Consensus       396 yvvfD~e~~rIGfa~~  411 (412)
                      |+|||++++|||||+|
T Consensus       311 y~vfD~~~~~IGfA~a  326 (326)
T cd05487         311 YTEFDRQNNRIGFALA  326 (326)
T ss_pred             EEEEeCCCCEEeeeeC
Confidence            9999999999999986

Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r

>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins

Probab=100.00  E-value=2.6e-54  Score=428.73  Aligned_cols=296  Identities=68%  Similarity=1.168  Sum_probs=263.7

Q ss_pred             cccccceeeecCccCccceEEecC-----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV-----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKD   76 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~-----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~   76 (412)
                      +|||+|.+.+..||||+++||++.     ..|..|+.|+|++|+|++..+..+++.|++|++.|.+++|+|++++..+++
T Consensus        17 iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~~D~v~ig~~~v~~   96 (317)
T cd06098          17 IGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISGFFSQDSVTVGDLVVKN   96 (317)
T ss_pred             ECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEEEEEeeEEEECCEEECC
Confidence            689999999999999999999986     268889999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCee
Q 015145           77 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFK  156 (412)
Q Consensus        77 ~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~  156 (412)
                      +.||++....+..+....++||||||++..+..+..+++.+|++||+|.+++||+||.+..+....|+|+|||+|++++.
T Consensus        97 ~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~  176 (317)
T cd06098          97 QVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFK  176 (317)
T ss_pred             EEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcc
Confidence            99999998766556667889999999998877678889999999999999999999987644445899999999999999


Q ss_pred             cCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhh
Q 015145          157 GKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDL  236 (412)
Q Consensus       157 g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  236 (412)
                      |++.|+|+.+..+|.+.+++++|+++.+..+.....++|||||+++.+|+++++++.                       
T Consensus       177 g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~-----------------------  233 (317)
T cd06098         177 GEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN-----------------------  233 (317)
T ss_pred             cceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-----------------------
Confidence            999999999889999999999999998766666788999999999999998665432                       


Q ss_pred             HHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhh
Q 015145          237 IWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINEL  316 (412)
Q Consensus       237 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~  316 (412)
                                                                                                      
T Consensus       234 --------------------------------------------------------------------------------  233 (317)
T cd06098         234 --------------------------------------------------------------------------------  233 (317)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceE
Q 015145          317 CDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH  396 (412)
Q Consensus       317 c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y  396 (412)
                                +.++|+....+|+|+|+|+|++|+|+|++|+++..++....|+++|+..+.....++.||||++|||++|
T Consensus       234 ----------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y  303 (317)
T cd06098         234 ----------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYH  303 (317)
T ss_pred             ----------ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccE
Confidence                      2358988788999999999999999999999987655566899999877654444568999999999999


Q ss_pred             EEEeCCCCeEEEEe
Q 015145          397 TVFDSGKLRIGFAE  410 (412)
Q Consensus       397 vvfD~e~~rIGfa~  410 (412)
                      +|||++++|||||+
T Consensus       304 ~VfD~~~~~iGfA~  317 (317)
T cd06098         304 TVFDYGNLRVGFAE  317 (317)
T ss_pred             EEEeCCCCEEeecC
Confidence            99999999999996

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro

>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa

Probab=100.00  E-value=2e-53  Score=421.93  Aligned_cols=304  Identities=37%  Similarity=0.704  Sum_probs=268.4

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+.+..||||+++||++.    ..|..++.|+|++|+|++..++.+++.|++|++.|.+++|++++|+..+.++
T Consensus        10 iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i~~g~~~i~~~   89 (318)
T cd05477          10 IGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTVTVQGIIITNQ   89 (318)
T ss_pred             ECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEEEECCEEEcCE
Confidence            689999999999999999999986    3588899999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145           78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG  157 (412)
Q Consensus        78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g  157 (412)
                      .||++....+..+.....+||||||++..+..+..+++++|+++|+|++++||+||.+.. ....|.|+|||+|++++.|
T Consensus        90 ~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~fGg~d~~~~~g  168 (318)
T cd05477          90 EFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVFGGVDNNLYTG  168 (318)
T ss_pred             EEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEEcccCHHHcCC
Confidence            999999865544555567999999999888777889999999999999999999998752 2347999999999999999


Q ss_pred             CceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhH
Q 015145          158 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLI  237 (412)
Q Consensus       158 ~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  237 (412)
                      ++.|+|+.+..+|.|++++++++++....+.....++|||||+++++|.+++++|.+.+++..                 
T Consensus       169 ~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~-----------------  231 (318)
T cd05477         169 QIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQ-----------------  231 (318)
T ss_pred             ceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCcc-----------------
Confidence            999999999999999999999999987655556789999999999999999999999886540                 


Q ss_pred             HHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhc
Q 015145          238 WDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELC  317 (412)
Q Consensus       238 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c  317 (412)
                                                                                                      
T Consensus       232 --------------------------------------------------------------------------------  231 (318)
T cd05477         232 --------------------------------------------------------------------------------  231 (318)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCC-CCcEEEccccccceE
Q 015145          318 DSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR-GPLWILGDVFMGVYH  396 (412)
Q Consensus       318 ~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~-~~~~iLG~~fl~~~y  396 (412)
                          ...+.|.+||+....+|.|+|.|+|+++.|+|++|+.+.    .++|++++++...+... .+.||||++|||++|
T Consensus       232 ----~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y  303 (318)
T cd05477         232 ----DQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYY  303 (318)
T ss_pred             ----ccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCCceEEEcHHHhhheE
Confidence                123568899998888999999999999999999999863    35899999865433222 257999999999999


Q ss_pred             EEEeCCCCeEEEEec
Q 015145          397 TVFDSGKLRIGFAEA  411 (412)
Q Consensus       397 vvfD~e~~rIGfa~~  411 (412)
                      ++||++++|||||+|
T Consensus       304 ~vfD~~~~~ig~a~~  318 (318)
T cd05477         304 SVYDLGNNQVGFATA  318 (318)
T ss_pred             EEEeCCCCEEeeeeC
Confidence            999999999999986

Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten

>PTZ00165 aspartyl protease; Provisional

Probab=100.00  E-value=1.1e-53  Score=445.76  Aligned_cols=300  Identities=32%  Similarity=0.607  Sum_probs=265.7

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEE--CCc---EEEEEEcCceEEEEEEEEEEEECCe
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISI--RGK---SCEINYGSGSISGFFSQDNVEVGDV   72 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~--~~~---~~~i~Y~~gs~~G~~~~D~v~lg~~   72 (412)
                      +|||+|.+.+..||||+++|||+.    ..|..|+.|+|++|+|++.  .+.   .+.++|++|++.|.+++|+|++|+.
T Consensus       127 IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l  206 (482)
T PTZ00165        127 VGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGL  206 (482)
T ss_pred             eCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCE
Confidence            689999999999999999999986    4688999999999999998  665   6789999999999999999999999


Q ss_pred             EEeeeEEEEEEeecCcccccCCccEEEeccCCccc---cCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCC
Q 015145           73 VVKDQVFIEATREGSLTFLLARFDGIIGLGFREIA---VGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGG  149 (412)
Q Consensus        73 ~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s---~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg  149 (412)
                      +++++.||++..+.+..|....+|||||||++.++   ..+..|++++|++||+|++++||+||.+..  ..+|+|+|||
T Consensus       207 ~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~--~~~G~l~fGG  284 (482)
T PTZ00165        207 KVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDL--NQPGSISFGS  284 (482)
T ss_pred             EEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCC--CCCCEEEeCC
Confidence            99999999999876666777789999999999873   345789999999999999999999998653  2379999999


Q ss_pred             CCCCCe--ecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchh
Q 015145          150 VDPKHF--KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECK  227 (412)
Q Consensus       150 ~D~~~~--~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~  227 (412)
                      +|++++  .|++.|+|+.+..+|.+.+++|+++++.+..+.....+++||||+++.+|.+++++|.+++++.        
T Consensus       285 iD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~--------  356 (482)
T PTZ00165        285 ADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE--------  356 (482)
T ss_pred             cCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc--------
Confidence            999877  5789999999999999999999999988776666789999999999999999999999988643        


Q ss_pred             hhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHH
Q 015145          228 LVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKE  307 (412)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  307 (412)
                                                                                                      
T Consensus       357 --------------------------------------------------------------------------------  356 (482)
T PTZ00165        357 --------------------------------------------------------------------------------  356 (482)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCE-----EEEeCcccceEEec--cccccceeeeeeeccCCCC
Q 015145          308 KVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDK-----IFNLSPEQYILKTG--EGIAEVCISGFMAFDLPPP  380 (412)
Q Consensus       308 ~~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~-----~~~i~p~~yl~~~~--~~~~~~C~~~i~~~~~~~~  380 (412)
                                           .+|+..+.+|+|+|.|+|.     +|.|+|++|+++..  ....+.|++++...+.+.+
T Consensus       357 ---------------------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~  415 (482)
T PTZ00165        357 ---------------------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAP  415 (482)
T ss_pred             ---------------------ccccccccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCC
Confidence                                 2788878899999999864     99999999999742  3345689999998876555


Q ss_pred             CCCcEEEccccccceEEEEeCCCCeEEEEecC
Q 015145          381 RGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       381 ~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      .++.||||++|||++|+|||.+++|||||+++
T Consensus       416 ~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~  447 (482)
T PTZ00165        416 RGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAK  447 (482)
T ss_pred             CCceEEEchhhheeEEEEEeCCCCEEEEEeec
Confidence            67899999999999999999999999999975

>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases

Probab=100.00  E-value=3.4e-53  Score=422.97  Aligned_cols=306  Identities=46%  Similarity=0.859  Sum_probs=270.2

Q ss_pred             cccccceeeecCccCccceEEecCC------CCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEe
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVP------ISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVK   75 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~------~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~   75 (412)
                      +|||+|.+....||||+++||++..      .|..+..|+|++|+|++..+++|.+.|++|++.|.+++|++++++..+.
T Consensus        18 vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~G~~~~D~v~ig~~~~~   97 (329)
T cd05485          18 IGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLSGFLSTDTVSVGGVSVK   97 (329)
T ss_pred             ECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEEEEEecCcEEECCEEEC
Confidence            5889999999999999999999861      4777889999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145           76 DQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF  155 (412)
Q Consensus        76 ~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~  155 (412)
                      ++.||++..+.+..+.....+||||||++..+.....|++.+|++||+|++++||+||.+.++....|+|+|||+|++++
T Consensus        98 ~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~  177 (329)
T cd05485          98 GQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHY  177 (329)
T ss_pred             CEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHc
Confidence            99999998776555666678999999999887667788999999999999999999998765444579999999999999


Q ss_pred             ecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchh
Q 015145          156 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGD  235 (412)
Q Consensus       156 ~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  235 (412)
                      .|+++|+|+.+..+|.|.++++++++..+.  ..+..++|||||+++.+|+++++++.+++++..               
T Consensus       178 ~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~--~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~---------------  240 (329)
T cd05485         178 TGNFTYLPVTRKGYWQFKMDSVSVGEGEFC--SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAKP---------------  240 (329)
T ss_pred             ccceEEEEcCCceEEEEEeeEEEECCeeec--CCCcEEEEccCCcceeCCHHHHHHHHHHhCCcc---------------
Confidence            999999999999999999999999998763  456789999999999999999999999886541               


Q ss_pred             hHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhh
Q 015145          236 LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINE  315 (412)
Q Consensus       236 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~  315 (412)
                                                                                                      
T Consensus       241 --------------------------------------------------------------------------------  240 (329)
T cd05485         241 --------------------------------------------------------------------------------  240 (329)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccce
Q 015145          316 LCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY  395 (412)
Q Consensus       316 ~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~  395 (412)
                            ...+.|.+||+..+.+|+|+|+|++++|.|+|++|+++....+..+|++.++..+.++..++.||||++|||++
T Consensus       241 ------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~  314 (329)
T cd05485         241 ------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKY  314 (329)
T ss_pred             ------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccc
Confidence                  11246889999888899999999999999999999998765556789999987655444556899999999999


Q ss_pred             EEEEeCCCCeEEEEe
Q 015145          396 HTVFDSGKLRIGFAE  410 (412)
Q Consensus       396 yvvfD~e~~rIGfa~  410 (412)
                      |+|||++++|||||+
T Consensus       315 y~vFD~~~~~ig~a~  329 (329)
T cd05485         315 YTEFDLGNNRVGFAT  329 (329)
T ss_pred             eEEEeCCCCEEeecC
Confidence            999999999999985

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an

>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals

Probab=100.00  E-value=5.3e-53  Score=418.93  Aligned_cols=297  Identities=38%  Similarity=0.711  Sum_probs=263.1

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+.+..||||+++||++.    ..|..|+.|+|++|+|++..++++++.|++|++.|.+++|+|++|+..+.++
T Consensus        17 vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~~~~D~v~ig~~~i~~~   96 (317)
T cd05478          17 IGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGILGYDTVQVGGISDTNQ   96 (317)
T ss_pred             eCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCCcEEEEEECCceEEEEEeeeEEEECCEEECCE
Confidence            689999999999999999999976    3577899999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145           78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG  157 (412)
Q Consensus        78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g  157 (412)
                      .||++....+..+.....+||||||++..+..+..+++++|++||+|.+++||+||.+..+  .+|.|+|||+|++++.|
T Consensus        97 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~--~~g~l~~Gg~d~~~~~g  174 (317)
T cd05478          97 IFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQ--QGSVVTFGGIDPSYYTG  174 (317)
T ss_pred             EEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCC--CCeEEEEcccCHHHccC
Confidence            9999987655433344679999999998877677889999999999999999999998642  37999999999999999


Q ss_pred             CceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhH
Q 015145          158 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLI  237 (412)
Q Consensus       158 ~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  237 (412)
                      +++|+|+.+..+|.|.++++.|+++.+. ...+..++||||++++++|++++++|.+++++..                 
T Consensus       175 ~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~-----------------  236 (317)
T cd05478         175 SLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ-----------------  236 (317)
T ss_pred             ceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc-----------------
Confidence            9999999999999999999999999875 2345789999999999999999999999886540                 


Q ss_pred             HHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhc
Q 015145          238 WDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELC  317 (412)
Q Consensus       238 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c  317 (412)
                                                                                                      
T Consensus       237 --------------------------------------------------------------------------------  236 (317)
T cd05478         237 --------------------------------------------------------------------------------  236 (317)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEE
Q 015145          318 DSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHT  397 (412)
Q Consensus       318 ~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yv  397 (412)
                          ...+.|.+||+....+|+|+|.|+|++|+|+|++|+.+.    .++|++.|+..+    ..+.||||++|||++|+
T Consensus       237 ----~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~----~~~~~IlG~~fl~~~y~  304 (317)
T cd05478         237 ----NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QGSCTSGFQSMG----LGELWILGDVFIRQYYS  304 (317)
T ss_pred             ----ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CCEEeEEEEeCC----CCCeEEechHHhcceEE
Confidence                123568899998888999999999999999999999864    458999898642    24689999999999999


Q ss_pred             EEeCCCCeEEEEe
Q 015145          398 VFDSGKLRIGFAE  410 (412)
Q Consensus       398 vfD~e~~rIGfa~  410 (412)
                      |||++++||||||
T Consensus       305 vfD~~~~~iG~A~  317 (317)
T cd05478         305 VFDRANNKVGLAP  317 (317)
T ss_pred             EEeCCCCEEeecC
Confidence            9999999999996

Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which

>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily

Probab=100.00  E-value=3.8e-52  Score=413.54  Aligned_cols=300  Identities=38%  Similarity=0.700  Sum_probs=265.1

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+....||||+++||++.    ..|..|+.|+|++|+|++..++.+.+.|++|++.|.+++|++++++..++++
T Consensus        17 iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G~~~~D~v~ig~~~~~~~   96 (320)
T cd05488          17 LGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEGFVSQDTLSIGDLTIKKQ   96 (320)
T ss_pred             ECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeCCCEEEEEECCceEEEEEEEeEEEECCEEECCE
Confidence            689999999999999999999987    3688889999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145           78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG  157 (412)
Q Consensus        78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g  157 (412)
                      .||++....+..+.....+||||||++..+..+..+.+.+|++||+|.+++||+||.+..  ...|.|+|||+|++++.|
T Consensus        97 ~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~~~G~l~fGg~d~~~~~g  174 (320)
T cd05488          97 DFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--EDGGEATFGGIDESRFTG  174 (320)
T ss_pred             EEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--CCCcEEEECCcCHHHcCC
Confidence            999998776554555678999999999887666678889999999999999999999863  247999999999999999


Q ss_pred             CceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhH
Q 015145          158 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLI  237 (412)
Q Consensus       158 ~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  237 (412)
                      +++|+|+.+..+|.|.+++++++++.+..  ....++|||||+++++|+++++.+.+++++..                 
T Consensus       175 ~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~-----------------  235 (320)
T cd05488         175 KITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK-----------------  235 (320)
T ss_pred             ceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcCCcccccCCHHHHHHHHHHhCCcc-----------------
Confidence            99999999889999999999999988753  45679999999999999999999999886540                 


Q ss_pred             HHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhc
Q 015145          238 WDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELC  317 (412)
Q Consensus       238 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c  317 (412)
                                                                                                      
T Consensus       236 --------------------------------------------------------------------------------  235 (320)
T cd05488         236 --------------------------------------------------------------------------------  235 (320)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEE
Q 015145          318 DSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHT  397 (412)
Q Consensus       318 ~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yv  397 (412)
                          ...+.|.+||+....+|+|+|.|+|++|.|+|++|+++.    .+.|++.+...+.+...++.||||++|||++|+
T Consensus       236 ----~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~----~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~  307 (320)
T cd05488         236 ----SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEV----SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYS  307 (320)
T ss_pred             ----ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecC----CCeEEEEEEECcCCCCCCCeEEEchHHhhheEE
Confidence                124568899998888999999999999999999999853    247999998765443345689999999999999


Q ss_pred             EEeCCCCeEEEEe
Q 015145          398 VFDSGKLRIGFAE  410 (412)
Q Consensus       398 vfD~e~~rIGfa~  410 (412)
                      |||++++|||||+
T Consensus       308 vfD~~~~~iG~a~  320 (320)
T cd05488         308 VYDLGNNAVGLAK  320 (320)
T ss_pred             EEeCCCCEEeecC
Confidence            9999999999996

Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro

>PTZ00147 plasmepsin-1; Provisional

Probab=100.00  E-value=2.6e-50  Score=417.53  Aligned_cols=299  Identities=29%  Similarity=0.514  Sum_probs=257.8

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+.+..||||+++|||+.    ..|..|+.|+|++|+|++..++.+++.|++|++.|.+++|+|++|+..++ .
T Consensus       146 IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~GsvsG~~~~DtVtiG~~~v~-~  224 (453)
T PTZ00147        146 LGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDGTKVEMNYVSGTVSGFFSKDLVTIGNLSVP-Y  224 (453)
T ss_pred             ECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECCCEEEEEeCCCCEEEEEEEEEEEECCEEEE-E
Confidence            689999999999999999999986    36888999999999999999999999999999999999999999999988 5


Q ss_pred             EEEEEEeecCc--ccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145           78 VFIEATREGSL--TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF  155 (412)
Q Consensus        78 ~fg~~~~~~~~--~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~  155 (412)
                      .|+++.+..+.  .+....+|||||||++..+.....|++.+|++||+|++++||+||.+..  ...|.|+|||+|++++
T Consensus       225 qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~--~~~G~L~fGGiD~~ky  302 (453)
T PTZ00147        225 KFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPED--KHKGYLTIGGIEERFY  302 (453)
T ss_pred             EEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCC--CCCeEEEECCcChhhc
Confidence            78888765442  2344578999999999887777889999999999999999999998643  2479999999999999


Q ss_pred             ecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchh
Q 015145          156 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGD  235 (412)
Q Consensus       156 ~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  235 (412)
                      .|++.|+|+.+..+|.|.++ +.+++...    ....++|||||+++.+|+++++++.+++++...              
T Consensus       303 ~G~l~y~pl~~~~~W~V~l~-~~vg~~~~----~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~--------------  363 (453)
T PTZ00147        303 EGPLTYEKLNHDLYWQVDLD-VHFGNVSS----EKANVIVDSGTSVITVPTEFLNKFVESLDVFKV--------------  363 (453)
T ss_pred             CCceEEEEcCCCceEEEEEE-EEECCEec----CceeEEECCCCchhcCCHHHHHHHHHHhCCeec--------------
Confidence            99999999998899999997 57776532    456799999999999999999999998865410              


Q ss_pred             hHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhh
Q 015145          236 LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINE  315 (412)
Q Consensus       236 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~  315 (412)
                                                                                                      
T Consensus       364 --------------------------------------------------------------------------------  363 (453)
T PTZ00147        364 --------------------------------------------------------------------------------  363 (453)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccce
Q 015145          316 LCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY  395 (412)
Q Consensus       316 ~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~  395 (412)
                            ...+.|.++|+. ..+|+|+|.++|+.++|+|++|+.+..+.....|++++++.+.   ..+.||||++|||++
T Consensus       364 ------~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~---~~~~~ILGd~FLr~~  433 (453)
T PTZ00147        364 ------PFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLNIIPIDL---EKNTFILGDPFMRKY  433 (453)
T ss_pred             ------CCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCCCcEEEEEEEECCC---CCCCEEECHHHhccE
Confidence                  113457889996 5789999999999999999999986554455689999987542   235899999999999


Q ss_pred             EEEEeCCCCeEEEEecC
Q 015145          396 HTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       396 yvvfD~e~~rIGfa~~~  412 (412)
                      |+|||++++|||||+++
T Consensus       434 YtVFD~~n~rIGfA~a~  450 (453)
T PTZ00147        434 FTVFDYDNHTVGFALAK  450 (453)
T ss_pred             EEEEECCCCEEEEEEec
Confidence            99999999999999985

>PTZ00013 plasmepsin 4 (PM4); Provisional

Probab=100.00  E-value=9e-50  Score=412.94  Aligned_cols=299  Identities=27%  Similarity=0.501  Sum_probs=255.7

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+.+..||||+++|||++    ..|..|+.|+|++|+|++..++.+++.|++|++.|.+++|+|++|+.++. .
T Consensus       145 IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~Gsv~G~~~~Dtv~iG~~~~~-~  223 (450)
T PTZ00013        145 VGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMP-Y  223 (450)
T ss_pred             ECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCCcEEEEEECCceEEEEEEEEEEEECCEEEc-c
Confidence            689999999999999999999987    26888999999999999999999999999999999999999999999887 5


Q ss_pred             EEEEEEeecC--cccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145           78 VFIEATREGS--LTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF  155 (412)
Q Consensus        78 ~fg~~~~~~~--~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~  155 (412)
                      .|+++.....  ..+....++||||||++..+.....|++.+|++||+|++++||+||.+..  ...|.|+|||+|+++|
T Consensus       224 ~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~--~~~G~L~fGGiD~~~y  301 (450)
T PTZ00013        224 KFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHD--VHAGYLTIGGIEEKFY  301 (450)
T ss_pred             EEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEecCCC--CCCCEEEECCcCcccc
Confidence            7888776432  22444578999999999887667889999999999999999999998643  2479999999999999


Q ss_pred             ecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchh
Q 015145          156 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGD  235 (412)
Q Consensus       156 ~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  235 (412)
                      .|++.|+|+.+..+|.|+++ +.++....    ....++|||||+++++|+++++++.+++++..               
T Consensus       302 ~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~---------------  361 (450)
T PTZ00013        302 EGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNKFFANLNVIK---------------  361 (450)
T ss_pred             ccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHHHHHHhCCee---------------
Confidence            99999999998999999997 66665432    34679999999999999999999999886541               


Q ss_pred             hHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhh
Q 015145          236 LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINE  315 (412)
Q Consensus       236 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~  315 (412)
                                                                                                      
T Consensus       362 --------------------------------------------------------------------------------  361 (450)
T PTZ00013        362 --------------------------------------------------------------------------------  361 (450)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccce
Q 015145          316 LCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY  395 (412)
Q Consensus       316 ~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~  395 (412)
                          . ...+.|.++|+. ..+|+|+|.++|.+++|+|++|+.+......+.|++.+.+.+.   ..+.||||++|||++
T Consensus       362 ----~-~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~---~~~~~ILGd~FLr~~  432 (450)
T PTZ00013        362 ----V-PFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMITMLPVDI---DDNTFILGDPFMRKY  432 (450)
T ss_pred             ----c-CCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCCCCeeEEEEEECCC---CCCCEEECHHHhccE
Confidence                0 123458889986 5789999999999999999999976443345689999986532   235899999999999


Q ss_pred             EEEEeCCCCeEEEEecC
Q 015145          396 HTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       396 yvvfD~e~~rIGfa~~~  412 (412)
                      |+|||++++|||||+++
T Consensus       433 Y~VFD~~n~rIGfA~a~  449 (450)
T PTZ00013        433 FTVFDYDKESVGFAIAK  449 (450)
T ss_pred             EEEEECCCCEEEEEEeC
Confidence            99999999999999985

>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077

Probab=100.00  E-value=1.3e-50  Score=397.87  Aligned_cols=304  Identities=33%  Similarity=0.576  Sum_probs=270.2

Q ss_pred             cccccceeeecCccCccceEEecCC-----CCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVP-----ISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKD   76 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~-----~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~   76 (412)
                      +|||+|.+....||||+++||++..     .|..+..|+++.|+|++..++.+.++|++|+++|.+++|++++++..+.+
T Consensus         8 iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~ig~~~~~~   87 (317)
T PF00026_consen    8 IGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSIGGLTIPN   87 (317)
T ss_dssp             ETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred             ECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEeeeeccccc
Confidence            6899999999999999999999761     46788999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeecCcccccCCccEEEeccCCccccCC-CCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145           77 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGD-AVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF  155 (412)
Q Consensus        77 ~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~-~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~  155 (412)
                      +.||++....+..+.....+||||||++..+... ..+++++|+++|+|.+++||+++++..  ...|.|+|||+|++++
T Consensus        88 ~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~Gg~d~~~~  165 (317)
T PF00026_consen   88 QTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFGGYDPSKY  165 (317)
T ss_dssp             EEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEESSEEGGGE
T ss_pred             cceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheeeccccccc
Confidence            9999999976655667788999999988776554 788999999999999999999999885  4579999999999999


Q ss_pred             ecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchh
Q 015145          156 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGD  235 (412)
Q Consensus       156 ~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  235 (412)
                      +|+++|+|+....+|.+.+++|.+++... .+.....++||||++++.+|.++++.+++.+++...              
T Consensus       166 ~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~--------------  230 (317)
T PF00026_consen  166 DGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYS--------------  230 (317)
T ss_dssp             ESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEE--------------
T ss_pred             cCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhccccc--------------
Confidence            99999999999999999999999999932 234567899999999999999999999999987620              


Q ss_pred             hHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhh
Q 015145          236 LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINE  315 (412)
Q Consensus       236 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~  315 (412)
                                                                                                      
T Consensus       231 --------------------------------------------------------------------------------  230 (317)
T PF00026_consen  231 --------------------------------------------------------------------------------  230 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccce
Q 015145          316 LCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY  395 (412)
Q Consensus       316 ~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~  395 (412)
                              .+.|.++|+....+|.|+|.|++.+|+|+|++|+.+..+.....|++.|...+. ....+.++||.+|||++
T Consensus       231 --------~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~~~~~iLG~~fl~~~  301 (317)
T PF00026_consen  231 --------DGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS-SDDSDDWILGSPFLRNY  301 (317)
T ss_dssp             --------CSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESS-TTSSSEEEEEHHHHTTE
T ss_pred             --------ceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccc-cccCCceEecHHHhhce
Confidence                    157899999888899999999999999999999998877666689999998654 34567999999999999


Q ss_pred             EEEEeCCCCeEEEEec
Q 015145          396 HTVFDSGKLRIGFAEA  411 (412)
Q Consensus       396 yvvfD~e~~rIGfa~~  411 (412)
                      |++||++++|||||+|
T Consensus       302 y~vfD~~~~~ig~A~a  317 (317)
T PF00026_consen  302 YVVFDYENNRIGFAQA  317 (317)
T ss_dssp             EEEEETTTTEEEEEEE
T ss_pred             EEEEeCCCCEEEEecC
Confidence            9999999999999997

; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....

>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin

Probab=100.00  E-value=1.2e-45  Score=359.71  Aligned_cols=262  Identities=28%  Similarity=0.443  Sum_probs=227.0

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEE-CCcEEEEEEcCce-EEEEEEEEEEEECCeEEe
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISI-RGKSCEINYGSGS-ISGFFSQDNVEVGDVVVK   75 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~-~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~~~~   75 (412)
                      +|||+|.+.+..||||+++||+++    +.|..+..|+|++|+|++. .++++.+.|++|+ +.|.+++|+|++++..+.
T Consensus         7 vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ig~~~~~   86 (278)
T cd06097           7 IGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVSIGGVEVP   86 (278)
T ss_pred             ECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEEECCEEEC
Confidence            689999999999999999999987    2345677899999999987 5789999999997 899999999999999999


Q ss_pred             eeEEEEEEeecCcccccCCccEEEeccCCccccC---CCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCC
Q 015145           76 DQVFIEATREGSLTFLLARFDGIIGLGFREIAVG---DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDP  152 (412)
Q Consensus        76 ~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~---~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~  152 (412)
                      ++.||+++...+..+....++||||||++..+..   ...+++++|.+++.  +++||+||.+.    ..|+|+|||+|+
T Consensus        87 ~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l~fGg~D~  160 (278)
T cd06097          87 NQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFYTFGYIDE  160 (278)
T ss_pred             CeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEEEEeccCh
Confidence            9999999987654456678899999999876542   35678999999975  89999999873    279999999999


Q ss_pred             CCeecCceEeeccc-cceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhh
Q 015145          153 KHFKGKHTYVPVTK-KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVS  231 (412)
Q Consensus       153 ~~~~g~l~~~p~~~-~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~  231 (412)
                      +++.|++.|+|+.+ ..+|.|.+++++++++... ...+..++|||||+++++|.++++++.+++++..           
T Consensus       161 ~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~-----------  228 (278)
T cd06097         161 SKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVPGAY-----------  228 (278)
T ss_pred             HHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCcCCc-----------
Confidence            99999999999986 7899999999999998432 3467889999999999999999999999984330           


Q ss_pred             hchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHH
Q 015145          232 QYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLS  311 (412)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~  311 (412)
                                                                                                      
T Consensus       229 --------------------------------------------------------------------------------  228 (278)
T cd06097         229 --------------------------------------------------------------------------------  228 (278)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEcccc
Q 015145          312 YINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVF  391 (412)
Q Consensus       312 ~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~f  391 (412)
                              .....+.|.+||+..  +|+|+|.|                                       .||||++|
T Consensus       229 --------~~~~~~~~~~~C~~~--~P~i~f~~---------------------------------------~~ilGd~f  259 (278)
T cd06097         229 --------YDSEYGGWVFPCDTT--LPDLSFAV---------------------------------------FSILGDVF  259 (278)
T ss_pred             --------ccCCCCEEEEECCCC--CCCEEEEE---------------------------------------EEEEcchh
Confidence                    012356799999963  89999998                                       48999999


Q ss_pred             ccceEEEEeCCCCeEEEEe
Q 015145          392 MGVYHTVFDSGKLRIGFAE  410 (412)
Q Consensus       392 l~~~yvvfD~e~~rIGfa~  410 (412)
                      ||++|+|||++++|||||+
T Consensus       260 l~~~y~vfD~~~~~ig~A~  278 (278)
T cd06097         260 LKAQYVVFDVGGPKLGFAP  278 (278)
T ss_pred             hCceeEEEcCCCceeeecC
Confidence            9999999999999999996

The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-

>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease

Probab=100.00  E-value=1.4e-45  Score=372.78  Aligned_cols=309  Identities=25%  Similarity=0.362  Sum_probs=242.3

Q ss_pred             cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEe--eeEE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVK--DQVF   79 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~--~~~f   79 (412)
                      +|||+|.+.+..||||+++||++...|..|+.|+|++|+|++..++.+++.|++|++.|.+++|+|++++....  .+.|
T Consensus        10 iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ig~~~~~~~~~~~   89 (364)
T cd05473          10 IGTPPQKLNILVDTGSSNFAVAAAPHPFIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVSIPKGPNVTFRANI   89 (364)
T ss_pred             ecCCCceEEEEEecCCcceEEEcCCCccccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEEECCCCccceEEee
Confidence            68999999999999999999999876777889999999999999999999999999999999999999863211  1234


Q ss_pred             EEEEeecCcccccCCccEEEeccCCcccc--CCCCchHHHHHHcCCCCCCeEEEEecCCC-------CCCCCcEEEeCCC
Q 015145           80 IEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDP-------DAEEGGEIVFGGV  150 (412)
Q Consensus        80 g~~~~~~~~~~~~~~~dGilGLg~~~~s~--~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~-------~~~~~G~l~fGg~  150 (412)
                      +++....+..+....++||||||++.++.  ....+++++|++|+.+ +++||+||+...       +....|.|+|||+
T Consensus        90 ~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~  168 (364)
T cd05473          90 AAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGI  168 (364)
T ss_pred             EEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEecccccccccccccCCCcEEEeCCc
Confidence            45544332212234679999999998764  2467899999999987 579999986421       2234799999999


Q ss_pred             CCCCeecCceEeeccccceeEEEEceEEECCeeeceecC---CceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchh
Q 015145          151 DPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEG---GCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECK  227 (412)
Q Consensus       151 D~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~---~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~  227 (412)
                      |++++.|++.|+|+.+..+|.|.+++|+|+++.+.....   ...++|||||+++++|+++++++.++++++..      
T Consensus       169 D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~------  242 (364)
T cd05473         169 DPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASL------  242 (364)
T ss_pred             CHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcc------
Confidence            999999999999999889999999999999998764221   23699999999999999999999999976510      


Q ss_pred             hhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHH
Q 015145          228 LVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKE  307 (412)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  307 (412)
                                    ..                                                                
T Consensus       243 --------------~~----------------------------------------------------------------  244 (364)
T cd05473         243 --------------IE----------------------------------------------------------------  244 (364)
T ss_pred             --------------cc----------------------------------------------------------------
Confidence                          00                                                                


Q ss_pred             HHHHHhhhhccCCC-CCCCceeeeCCCCC-----CCCcEEEEECC------EEEEeCcccceEEecc-ccccceee-eee
Q 015145          308 KVLSYINELCDSLP-NPMGESIIDCDRIP-----TMPNVSFTIGD------KIFNLSPEQYILKTGE-GIAEVCIS-GFM  373 (412)
Q Consensus       308 ~~~~~~~~~c~~~~-~~~~~~~ipC~~~~-----~lp~l~f~~gg------~~~~i~p~~yl~~~~~-~~~~~C~~-~i~  373 (412)
                                 ..+ ...+.+.++|....     .+|+|+|+|+|      .++.|+|++|+.+... .....|+. .+.
T Consensus       245 -----------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~  313 (364)
T cd05473         245 -----------DFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAIS  313 (364)
T ss_pred             -----------cCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeee
Confidence                       000 11123456886533     58999999965      4789999999986432 23457975 232


Q ss_pred             eccCCCCCCCcEEEccccccceEEEEeCCCCeEEEEecC
Q 015145          374 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       374 ~~~~~~~~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      .      ..+.||||+.|||++|+|||++++|||||+++
T Consensus       314 ~------~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~  346 (364)
T cd05473         314 Q------STNGTVIGAVIMEGFYVVFDRANKRVGFAVST  346 (364)
T ss_pred             c------CCCceEEeeeeEcceEEEEECCCCEEeeEecc
Confidence            1      23569999999999999999999999999874

Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two

>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins

Probab=100.00  E-value=7e-45  Score=355.47  Aligned_cols=271  Identities=25%  Similarity=0.416  Sum_probs=234.3

Q ss_pred             cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECCeEEeeeEEE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFI   80 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~~~~~~~fg   80 (412)
                      +|||+|.+.+..||||+++||+                        ++++.|++|+ +.|++++|++++++..+.++.||
T Consensus         9 iGtp~q~~~v~~DTgS~~~wv~------------------------~~~~~Y~~g~~~~G~~~~D~v~~g~~~~~~~~fg   64 (295)
T cd05474           9 VGTPPQKVTVLLDTGSSDLWVP------------------------DFSISYGDGTSASGTWGTDTVSIGGATVKNLQFA   64 (295)
T ss_pred             ECCCCcEEEEEEeCCCCcceee------------------------eeEEEeccCCcEEEEEEEEEEEECCeEecceEEE
Confidence            6888999999999999999999                        6899999965 89999999999999999999999


Q ss_pred             EEEeecCcccccCCccEEEeccCCcccc-----CCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145           81 EATREGSLTFLLARFDGIIGLGFREIAV-----GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF  155 (412)
Q Consensus        81 ~~~~~~~~~~~~~~~dGilGLg~~~~s~-----~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~  155 (412)
                      ++...       ...+||||||+...+.     ...++++++|++||+|.+++||+|+.+..  ...|.|+|||+|++++
T Consensus        65 ~~~~~-------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g~l~~Gg~d~~~~  135 (295)
T cd05474          65 VANST-------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTGSILFGGVDTAKY  135 (295)
T ss_pred             EEecC-------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCceeEEEeeecccee
Confidence            99973       2458999999988743     23567999999999999999999998753  2379999999999999


Q ss_pred             ecCceEeecccc------ceeEEEEceEEECCeeec--eecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchh
Q 015145          156 KGKHTYVPVTKK------GYWQFELGDILIGNQSTG--VCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECK  227 (412)
Q Consensus       156 ~g~l~~~p~~~~------~~w~v~~~~i~v~~~~~~--~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~  227 (412)
                      .|++.|+|+...      .+|.|.+++|.+++....  .......++||||++++++|.+++++|.+++++...      
T Consensus       136 ~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~------  209 (295)
T cd05474         136 SGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYD------  209 (295)
T ss_pred             eceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEc------
Confidence            999999999765      789999999999998753  234567899999999999999999999999976510      


Q ss_pred             hhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHH
Q 015145          228 LVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKE  307 (412)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  307 (412)
                                                                                                      
T Consensus       210 --------------------------------------------------------------------------------  209 (295)
T cd05474         210 --------------------------------------------------------------------------------  209 (295)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEecc--ccccceeeeeeeccCCCCCCCcE
Q 015145          308 KVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGE--GIAEVCISGFMAFDLPPPRGPLW  385 (412)
Q Consensus       308 ~~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~--~~~~~C~~~i~~~~~~~~~~~~~  385 (412)
                                    ...+.|.++|+.... |+|+|.|+|++|+|++++|+++...  ...+.|++.|+..+.     +.|
T Consensus       210 --------------~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~~-----~~~  269 (295)
T cd05474         210 --------------SDEGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACYLGIQPSTS-----DYN  269 (295)
T ss_pred             --------------CCCcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEEEEEeCCC-----CcE
Confidence                          113568899998777 9999999999999999999987642  346789998986531     689


Q ss_pred             EEccccccceEEEEeCCCCeEEEEec
Q 015145          386 ILGDVFMGVYHTVFDSGKLRIGFAEA  411 (412)
Q Consensus       386 iLG~~fl~~~yvvfD~e~~rIGfa~~  411 (412)
                      |||++|||++|++||.+++|||||+|
T Consensus       270 iLG~~fl~~~y~vfD~~~~~ig~a~a  295 (295)
T cd05474         270 ILGDTFLRSAYVVYDLDNNEISLAQA  295 (295)
T ss_pred             EeChHHhhcEEEEEECCCCEEEeecC
Confidence            99999999999999999999999996

SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases

>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite

Probab=100.00  E-value=4.1e-43  Score=349.77  Aligned_cols=272  Identities=25%  Similarity=0.348  Sum_probs=225.1

Q ss_pred             cccccceeeecCccCccceEEecC--CCCCC--CCCCCCCCCCceEEC----------------CcEEEEEEcCce-EEE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV--PISGF--HLQSAISLFPAISIR----------------GKSCEINYGSGS-ISG   60 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~--~~c~~--~~~y~p~~Sst~~~~----------------~~~~~i~Y~~gs-~~G   60 (412)
                      +|||+|.+.+..||||+++||||.  ..|..  ++.|+|++|+|++..                .+.|.+.|++|+ +.|
T Consensus        10 vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~i~Y~~gs~~~G   89 (326)
T cd06096          10 IGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYSISYSEGSSISG   89 (326)
T ss_pred             ecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEEEEECCCCceee
Confidence            689999999999999999999997  34544  478999999999763                568999999998 899


Q ss_pred             EEEEEEEEECCeEEe-------eeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCC--CeEEE
Q 015145           61 FFSQDNVEVGDVVVK-------DQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE--EVFSF  131 (412)
Q Consensus        61 ~~~~D~v~lg~~~~~-------~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~--~~Fsl  131 (412)
                      .+++|+|+|++..+.       ++.|||+..+.+ .+.....+||||||+.+.+.  ..+...+|++++.+..  ++||+
T Consensus        90 ~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~~~~~~~~~FS~  166 (326)
T cd06096          90 FYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKRPKLKKDKIFSI  166 (326)
T ss_pred             EEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhcccccCCceEEE
Confidence            999999999986552       467999987654 34455679999999987542  3344556888877765  99999


Q ss_pred             EecCCCCCCCCcEEEeCCCCCCCee----------cCceEeeccccceeEEEEceEEECCeee-ceecCCceEEEcCCCC
Q 015145          132 WLNRDPDAEEGGEIVFGGVDPKHFK----------GKHTYVPVTKKGYWQFELGDILIGNQST-GVCEGGCAAIVDSGTS  200 (412)
Q Consensus       132 ~l~~~~~~~~~G~l~fGg~D~~~~~----------g~l~~~p~~~~~~w~v~~~~i~v~~~~~-~~~~~~~~~ivDSGts  200 (412)
                      ||.+.     .|.|+|||+|++++.          +++.|+|+.+..+|.|.+++|++++... ........++|||||+
T Consensus       167 ~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs  241 (326)
T cd06096         167 CLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGST  241 (326)
T ss_pred             EEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceecccCCCEEEeCCCC
Confidence            99864     699999999999987          8899999998899999999999998861 1234678899999999


Q ss_pred             CcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeecccccc
Q 015145          201 LLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSA  280 (412)
Q Consensus       201 ~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (412)
                      ++++|+++++++.+.                                                                 
T Consensus       242 ~~~lp~~~~~~l~~~-----------------------------------------------------------------  256 (326)
T cd06096         242 LSHFPEDLYNKINNF-----------------------------------------------------------------  256 (326)
T ss_pred             cccCCHHHHHHHHhh-----------------------------------------------------------------
Confidence            999999998876531                                                                 


Q ss_pred             CCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEEC-CEEEEeCcccceEE
Q 015145          281 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILK  359 (412)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~g-g~~~~i~p~~yl~~  359 (412)
                                                                              +|+|+|.|+ |++++++|++|+++
T Consensus       257 --------------------------------------------------------~P~i~~~f~~g~~~~i~p~~y~~~  280 (326)
T cd06096         257 --------------------------------------------------------FPTITIIFENNLKIDWKPSSYLYK  280 (326)
T ss_pred             --------------------------------------------------------cCcEEEEEcCCcEEEECHHHhccc
Confidence                                                                    178999998 89999999999987


Q ss_pred             eccccccceeeeeeeccCCCCCCCcEEEccccccceEEEEeCCCCeEEEEec
Q 015145          360 TGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA  411 (412)
Q Consensus       360 ~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~  411 (412)
                      ....   .|...+...      .+.||||++|||++|+|||++++|||||++
T Consensus       281 ~~~~---~c~~~~~~~------~~~~ILG~~flr~~y~vFD~~~~riGfa~~  323 (326)
T cd06096         281 KESF---WCKGGEKSV------SNKPILGASFFKNKQIIFDLDNNRIGFVES  323 (326)
T ss_pred             cCCc---eEEEEEecC------CCceEEChHHhcCcEEEEECcCCEEeeEcC
Confidence            5432   476666532      257999999999999999999999999986

The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l

>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase

Probab=100.00  E-value=3.5e-42  Score=338.42  Aligned_cols=280  Identities=23%  Similarity=0.351  Sum_probs=218.3

Q ss_pred             cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECCe-EEeeeEE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGDV-VVKDQVF   79 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~-~~~~~~f   79 (412)
                      +|||+|.+.+..||||+++||+|. .|                  +.|.+.|++|+ +.|++++|+|++++. .+.++.|
T Consensus         8 iGtP~q~~~v~~DTGSs~~Wv~c~-~c------------------~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~~~~~~~F   68 (299)
T cd05472           8 LGTPARDQTVIVDTGSDLTWVQCQ-PC------------------CLYQVSYGDGSYTTGDLATDTLTLGSSDVVPGFAF   68 (299)
T ss_pred             cCCCCcceEEEecCCCCcccccCC-CC------------------CeeeeEeCCCceEEEEEEEEEEEeCCCCccCCEEE
Confidence            799999999999999999999874 45                  68999999998 599999999999998 8899999


Q ss_pred             EEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeecCc
Q 015145           80 IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKH  159 (412)
Q Consensus        80 g~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g~l  159 (412)
                      ||+....+. +  ...+||||||+...+      ++.+|..+   .+++||+||.+.. ....|+|+|||+|++  .|++
T Consensus        69 g~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~fGg~d~~--~g~l  133 (299)
T cd05472          69 GCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSFGAAASV--PAGA  133 (299)
T ss_pred             ECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEeCCcccc--CCCc
Confidence            999876542 2  267999999998765      56677655   3589999998743 234899999999999  8999


Q ss_pred             eEeecccc----ceeEEEEceEEECCeeecee---cCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhh
Q 015145          160 TYVPVTKK----GYWQFELGDILIGNQSTGVC---EGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQ  232 (412)
Q Consensus       160 ~~~p~~~~----~~w~v~~~~i~v~~~~~~~~---~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~  232 (412)
                      .|+|+.+.    .+|.|++++|+|+++.+...   .....++|||||+++++|++++++|.+++.+...          .
T Consensus       134 ~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~----------~  203 (299)
T cd05472         134 SFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMA----------A  203 (299)
T ss_pred             eECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhc----------c
Confidence            99999753    68999999999999987642   2356799999999999999999999998854300          0


Q ss_pred             chhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHH
Q 015145          233 YGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSY  312 (412)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~  312 (412)
                      +.          ..+.                                                           .   .
T Consensus       204 ~~----------~~~~-----------------------------------------------------------~---~  211 (299)
T cd05472         204 YP----------RAPG-----------------------------------------------------------F---S  211 (299)
T ss_pred             CC----------CCCC-----------------------------------------------------------C---C
Confidence            00          0000                                                           0   0


Q ss_pred             hhhhccCCCCCCCceeeeCCCCCCCCcEEEEEC-CEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEcccc
Q 015145          313 INELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVF  391 (412)
Q Consensus       313 ~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~g-g~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~f  391 (412)
                      .-+.|..         ++|.....+|+|+|+|+ ++++.|+|++|++... .....|+ ++...+   ...+.||||+.|
T Consensus       212 ~~~~C~~---------~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~-~~~~~C~-~~~~~~---~~~~~~ilG~~f  277 (299)
T cd05472         212 ILDTCYD---------LSGFRSVSVPTVSLHFQGGADVELDASGVLYPVD-DSSQVCL-AFAGTS---DDGGLSIIGNVQ  277 (299)
T ss_pred             CCCccCc---------CCCCcCCccCCEEEEECCCCEEEeCcccEEEEec-CCCCEEE-EEeCCC---CCCCCEEEchHH
Confidence            0001221         12334467999999997 8999999999998432 2345797 454321   134679999999


Q ss_pred             ccceEEEEeCCCCeEEEEec
Q 015145          392 MGVYHTVFDSGKLRIGFAEA  411 (412)
Q Consensus       392 l~~~yvvfD~e~~rIGfa~~  411 (412)
                      ||++|+|||++++|||||++
T Consensus       278 l~~~~vvfD~~~~~igfa~~  297 (299)
T cd05472         278 QQTFRVVYDVAGGRIGFAPG  297 (299)
T ss_pred             ccceEEEEECCCCEEeEecC
Confidence            99999999999999999986

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5e-42  Score=351.22  Aligned_cols=299  Identities=35%  Similarity=0.581  Sum_probs=246.8

Q ss_pred             cccccceeeecCccCccceEEecC-C--CCCC-CCC-CCCCCCCceEECCc-E-----------------EEEEEcCce-
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV-P--ISGF-HLQ-SAISLFPAISIRGK-S-----------------CEINYGSGS-   57 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~-~--~c~~-~~~-y~p~~Sst~~~~~~-~-----------------~~i~Y~~gs-   57 (412)
                      +|||+|.+-+..||||+++||||. +  .|.. |.. |+|++|+|++..++ .                 |.+.|++|+ 
T Consensus        53 IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~C~y~i~Ygd~~~  132 (398)
T KOG1339|consen   53 IGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSSCPYSIQYGDGSS  132 (398)
T ss_pred             cCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccCcccCCcCceEEEeCCCCc
Confidence            688898888999999999999996 3  4765 555 99999999999773 3                 999999965 


Q ss_pred             EEEEEEEEEEEECC---eEEeeeEEEEEEeecCccccc-CCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEe
Q 015145           58 ISGFFSQDNVEVGD---VVVKDQVFIEATREGSLTFLL-ARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL  133 (412)
Q Consensus        58 ~~G~~~~D~v~lg~---~~~~~~~fg~~~~~~~~~~~~-~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l  133 (412)
                      +.|.+++|+|++++   ..+.++.|||+..+.+. +.. .+++||||||+..++.      ..++...+.. .++||+||
T Consensus       133 ~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~------~~q~~~~~~~-~~~FS~cL  204 (398)
T KOG1339|consen  133 TSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSV------PSQLPSFYNA-INVFSYCL  204 (398)
T ss_pred             eeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccc------eeecccccCC-ceeEEEEe
Confidence            89999999999998   77778999999998765 444 6789999999999884      3444443322 23899999


Q ss_pred             cCCCCC-CCCcEEEeCCCCCCCeecCceEeeccccc--eeEEEEceEEECCee----eceecCCceEEEcCCCCCcccCH
Q 015145          134 NRDPDA-EEGGEIVFGGVDPKHFKGKHTYVPVTKKG--YWQFELGDILIGNQS----TGVCEGGCAAIVDSGTSLLAGPT  206 (412)
Q Consensus       134 ~~~~~~-~~~G~l~fGg~D~~~~~g~l~~~p~~~~~--~w~v~~~~i~v~~~~----~~~~~~~~~~ivDSGts~i~lP~  206 (412)
                      .+.... ...|.|+||++|+.++.+.+.|+|+.+..  +|.+.+.+|+|+++.    ...+.....+++||||+++++|.
T Consensus       205 ~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDSGTs~t~lp~  284 (398)
T KOG1339|consen  205 SSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDSGTSLTYLPT  284 (398)
T ss_pred             CCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceEecCCCCEEEECCcceeeccH
Confidence            987533 25899999999999999999999998877  999999999999843    22233358899999999999999


Q ss_pred             HHHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccc
Q 015145          207 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  286 (412)
Q Consensus       207 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (412)
                      ++|+++.+++++.-                                                                  
T Consensus       285 ~~y~~i~~~~~~~~------------------------------------------------------------------  298 (398)
T KOG1339|consen  285 SAYNALREAIGAEV------------------------------------------------------------------  298 (398)
T ss_pred             HHHHHHHHHHHhhe------------------------------------------------------------------
Confidence            99999999997650                                                                  


Q ss_pred             hhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCCCCceeeeCCCCCC----CCcEEEEEC-CEEEEeCcccceEEec
Q 015145          287 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPT----MPNVSFTIG-DKIFNLSPEQYILKTG  361 (412)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~ipC~~~~~----lp~l~f~~g-g~~~~i~p~~yl~~~~  361 (412)
                                                      ++....+.+.++|.....    +|.|.|+|+ |+.|.+++++|+++..
T Consensus       299 --------------------------------~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~  346 (398)
T KOG1339|consen  299 --------------------------------SVVGTDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKNYLVEVS  346 (398)
T ss_pred             --------------------------------eccccCCceeeecccCCCCcccCCcEEEEECCCcEEEeCccceEEEEC
Confidence                                            001345677889987776    999999999 8999999999999876


Q ss_pred             cccccceeeeeeeccCCCCCCCcEEEccccccceEEEEeCC-CCeEEEEec
Q 015145          362 EGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSG-KLRIGFAEA  411 (412)
Q Consensus       362 ~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yvvfD~e-~~rIGfa~~  411 (412)
                      ..... |...+...+.+    +.||||+.|+++++++||.. ++|||||++
T Consensus       347 ~~~~~-Cl~~~~~~~~~----~~~ilG~~~~~~~~~~~D~~~~~riGfa~~  392 (398)
T KOG1339|consen  347 DGGGV-CLAFFNGMDSG----PLWILGDVFQQNYLVVFDLGENSRVGFAPA  392 (398)
T ss_pred             CCCCc-eeeEEecCCCC----ceEEEchHHhCCEEEEEeCCCCCEEEeccc
Confidence            54322 99888764321    68999999999999999999 999999985

>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH

Probab=100.00  E-value=2.6e-40  Score=318.87  Aligned_cols=269  Identities=39%  Similarity=0.655  Sum_probs=232.5

Q ss_pred             cccccceeeecCccCccceEEecC--CCC--CCCCC--CCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEe
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV--PIS--GFHLQ--SAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVK   75 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~--~~c--~~~~~--y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~   75 (412)
                      +|||+|.+....||||+.+||++.  ..|  ..+..  |++..|+++....+.+++.|++|++.|.+++|++++++..+.
T Consensus         7 iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~~~~~~~~   86 (283)
T cd05471           7 IGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVTIGGLTIP   86 (283)
T ss_pred             ECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEEECCEEEe
Confidence            689999999999999999999998  222  23333  789999999999999999999999999999999999999999


Q ss_pred             eeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145           76 DQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF  155 (412)
Q Consensus        76 ~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~  155 (412)
                      ++.|||+..... .+.....+||||||+...+.....+++.+|.++|.|.+++||+|+.+..+....|.|+|||+|++++
T Consensus        87 ~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~  165 (283)
T cd05471          87 NQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKY  165 (283)
T ss_pred             ceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCcccc
Confidence            999999998754 3445678999999999876556788999999999999999999999853233589999999999999


Q ss_pred             ecCceEeeccc--cceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhc
Q 015145          156 KGKHTYVPVTK--KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQY  233 (412)
Q Consensus       156 ~g~l~~~p~~~--~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~  233 (412)
                      .+++.|+|+..  ..+|.+.+++|.+++...........++||||++++++|.+++++|.+++.+...            
T Consensus       166 ~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~------------  233 (283)
T cd05471         166 TGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVS------------  233 (283)
T ss_pred             CCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCccc------------
Confidence            99999999987  8999999999999997422235678899999999999999999999999977610            


Q ss_pred             hhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHh
Q 015145          234 GDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYI  313 (412)
Q Consensus       234 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~  313 (412)
                                                                                                      
T Consensus       234 --------------------------------------------------------------------------------  233 (283)
T cd05471         234 --------------------------------------------------------------------------------  233 (283)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEcccccc
Q 015145          314 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMG  393 (412)
Q Consensus       314 ~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~  393 (412)
                              .....+..+|.....+|+|+|+|                                       .+|||.+|||
T Consensus       234 --------~~~~~~~~~~~~~~~~p~i~f~f---------------------------------------~~ilG~~fl~  266 (283)
T cd05471         234 --------SSDGGYGVDCSPCDTLPDITFTF---------------------------------------LWILGDVFLR  266 (283)
T ss_pred             --------ccCCcEEEeCcccCcCCCEEEEE---------------------------------------EEEccHhhhh
Confidence                    01234667888888999999999                                       4799999999


Q ss_pred             ceEEEEeCCCCeEEEEe
Q 015145          394 VYHTVFDSGKLRIGFAE  410 (412)
Q Consensus       394 ~~yvvfD~e~~rIGfa~  410 (412)
                      ++|++||.+++|||||+
T Consensus       267 ~~y~vfD~~~~~igfa~  283 (283)
T cd05471         267 NYYTVFDLDNNRIGFAP  283 (283)
T ss_pred             heEEEEeCCCCEEeecC
Confidence            99999999999999985

Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu

>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants

Probab=100.00  E-value=3e-40  Score=319.84  Aligned_cols=241  Identities=25%  Similarity=0.410  Sum_probs=206.5

Q ss_pred             cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECCe--EEeeeE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGDV--VVKDQV   78 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~--~~~~~~   78 (412)
                      +|||+|++-+..||||+++||+|                      +.+.+.|++|+ +.|++++|+|++++.  .+.++.
T Consensus         8 iGtP~q~~~v~~DTGSs~~wv~~----------------------~~~~~~Y~dg~~~~G~~~~D~v~~g~~~~~~~~~~   65 (265)
T cd05476           8 IGTPPQPFSLIVDTGSDLTWTQC----------------------CSYEYSYGDGSSTSGVLATETFTFGDSSVSVPNVA   65 (265)
T ss_pred             cCCCCcceEEEecCCCCCEEEcC----------------------CceEeEeCCCceeeeeEEEEEEEecCCCCccCCEE
Confidence            78999999999999999999996                      56889999876 899999999999998  789999


Q ss_pred             EEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeecC
Q 015145           79 FIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGK  158 (412)
Q Consensus        79 fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g~  158 (412)
                      |||+..+.+  +.....+||||||++..+      ++.||..++    ++||+||.+..+....|+|+|||+|++ +.|+
T Consensus        66 Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~fGg~d~~-~~~~  132 (265)
T cd05476          66 FGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLILGDAADL-GGSG  132 (265)
T ss_pred             EEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEEECCcccc-cCCC
Confidence            999998754  556678999999997665      788998887    899999987543445899999999999 9999


Q ss_pred             ceEeeccc----cceeEEEEceEEECCeeece--------ecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecch
Q 015145          159 HTYVPVTK----KGYWQFELGDILIGNQSTGV--------CEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAEC  226 (412)
Q Consensus       159 l~~~p~~~----~~~w~v~~~~i~v~~~~~~~--------~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~  226 (412)
                      +.|+|+..    ..+|.+++++|+++++.+.+        ......++|||||+++++|++++                 
T Consensus       133 l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~-----------------  195 (265)
T cd05476         133 VVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY-----------------  195 (265)
T ss_pred             ceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcccc-----------------
Confidence            99999975    58999999999999998742        24567899999999999998621                 


Q ss_pred             hhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhH
Q 015145          227 KLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTK  306 (412)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  306 (412)
                                                                                                      
T Consensus       196 --------------------------------------------------------------------------------  195 (265)
T cd05476         196 --------------------------------------------------------------------------------  195 (265)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEEC-CEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcE
Q 015145          307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW  385 (412)
Q Consensus       307 ~~~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~g-g~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~  385 (412)
                                                     |+|+|.|+ +++|.++|++|+.+..  ....|+..+. .    ...+.|
T Consensus       196 -------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~--~~~~C~~~~~-~----~~~~~~  237 (265)
T cd05476         196 -------------------------------PDLTLHFDGGADLELPPENYFVDVG--EGVVCLAILS-S----SSGGVS  237 (265)
T ss_pred             -------------------------------CCEEEEECCCCEEEeCcccEEEECC--CCCEEEEEec-C----CCCCcE
Confidence                                           67999998 8999999999998533  4468975443 2    145789


Q ss_pred             EEccccccceEEEEeCCCCeEEEEecC
Q 015145          386 ILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       386 iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      |||++|||++|++||.+++|||||++.
T Consensus       238 ilG~~fl~~~~~vFD~~~~~iGfa~~~  264 (265)
T cd05476         238 ILGNIQQQNFLVEYDLENSRLGFAPAD  264 (265)
T ss_pred             EEChhhcccEEEEEECCCCEEeeecCC
Confidence            999999999999999999999999873

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which

>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation

Probab=100.00  E-value=2.7e-39  Score=314.73  Aligned_cols=251  Identities=20%  Similarity=0.296  Sum_probs=206.8

Q ss_pred             cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECC----eEEee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGD----VVVKD   76 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~----~~~~~   76 (412)
                      +|||+|.+....||||+++||+|...|...              ++.|++.|++|+ +.|.+++|+|++++    ..+.+
T Consensus         9 iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c--------------~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~   74 (273)
T cd05475           9 IGNPPKPYFLDIDTGSDLTWLQCDAPCTGC--------------QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPR   74 (273)
T ss_pred             cCCCCeeEEEEEccCCCceEEeCCCCCCCC--------------cCccEeEeCCCCceEEEEEEEEEEEeecCCCcccCC
Confidence            689999999999999999999985445322              467999999765 89999999999963    46778


Q ss_pred             eEEEEEEeecCcc-cccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145           77 QVFIEATREGSLT-FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF  155 (412)
Q Consensus        77 ~~fg~~~~~~~~~-~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~  155 (412)
                      +.|||+....+.. ......+||||||+...+      ++.+|.++++| +++||+||.+..    +|.|+||  |..++
T Consensus        75 ~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~~----~g~l~~G--~~~~~  141 (273)
T cd05475          75 IAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSNG----GGFLFFG--DDLVP  141 (273)
T ss_pred             EEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCCC----CeEEEEC--CCCCC
Confidence            9999998764432 234568999999997665      89999999999 899999998742    6999998  56677


Q ss_pred             ecCceEeecccc---ceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhh
Q 015145          156 KGKHTYVPVTKK---GYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQ  232 (412)
Q Consensus       156 ~g~l~~~p~~~~---~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~  232 (412)
                      .|++.|+|+.+.   .+|.|.+.+|+|+++...  .....++|||||+++++|+++|                       
T Consensus       142 ~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--~~~~~~ivDTGTt~t~lp~~~y-----------------------  196 (273)
T cd05475         142 SSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--GKGLEVVFDSGSSYTYFNAQAY-----------------------  196 (273)
T ss_pred             CCCeeecccccCCCCCeEEEeEeEEEECCEECc--CCCceEEEECCCceEEcCCccc-----------------------
Confidence            899999999864   899999999999998653  4567899999999999998732                       


Q ss_pred             chhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHH
Q 015145          233 YGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSY  312 (412)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~  312 (412)
                                                                                                      
T Consensus       197 --------------------------------------------------------------------------------  196 (273)
T cd05475         197 --------------------------------------------------------------------------------  196 (273)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccCCCCCCCceeeeCCCCCCCCcEEEEECC----EEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEc
Q 015145          313 INELCDSLPNPMGESIIDCDRIPTMPNVSFTIGD----KIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILG  388 (412)
Q Consensus       313 ~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg----~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG  388 (412)
                                              +|+|+|.|++    ++++|+|++|++...  ....|+..+...+.  ...+.||||
T Consensus       197 ------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~--~~~~Cl~~~~~~~~--~~~~~~ilG  248 (273)
T cd05475         197 ------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISE--KGNVCLGILNGSEI--GLGNTNIIG  248 (273)
T ss_pred             ------------------------cccEEEEECCCCceeEEEeCCCceEEEcC--CCCEEEEEecCCCc--CCCceEEEC
Confidence                                    3679999986    799999999998743  23479877754321  234689999


Q ss_pred             cccccceEEEEeCCCCeEEEEecC
Q 015145          389 DVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       389 ~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      +.|||++|++||++++|||||++.
T Consensus       249 ~~~l~~~~~vfD~~~~riGfa~~~  272 (273)
T cd05475         249 DISMQGLMVIYDNEKQQIGWVRSD  272 (273)
T ss_pred             ceEEEeeEEEEECcCCEeCcccCC
Confidence            999999999999999999999874

Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d

>PLN03146 aspartyl protease family protein; Provisional

Probab=100.00  E-value=2.2e-38  Score=327.50  Aligned_cols=292  Identities=18%  Similarity=0.233  Sum_probs=224.9

Q ss_pred             cccccceeeecCccCccceEEecC--CCCC--CCCCCCCCCCCceEEC--------------------CcEEEEEEcCce
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV--PISG--FHLQSAISLFPAISIR--------------------GKSCEINYGSGS   57 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~--~~c~--~~~~y~p~~Sst~~~~--------------------~~~~~i~Y~~gs   57 (412)
                      +|||+|.+.+..||||+++||+|.  ..|.  .+..|||++|+|++..                    .+.|.+.|++|+
T Consensus        91 iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~Ygdgs  170 (431)
T PLN03146         91 IGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYSYGDGS  170 (431)
T ss_pred             cCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEEeCCCC
Confidence            689999999999999999999996  3565  4578999999999864                    268999999998


Q ss_pred             -EEEEEEEEEEEECC-----eEEeeeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEE
Q 015145           58 -ISGFFSQDNVEVGD-----VVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSF  131 (412)
Q Consensus        58 -~~G~~~~D~v~lg~-----~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl  131 (412)
                       ..|.+++|+++|++     ..+.++.|||++...+. |. ...+||||||+...+      ++.||..+  +. ++||+
T Consensus       171 ~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql~~~--~~-~~FSy  239 (431)
T PLN03146        171 FTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQLGSS--IG-GKFSY  239 (431)
T ss_pred             ceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHhhHh--hC-CcEEE
Confidence             69999999999987     45889999999876542 32 257899999998776      77887653  44 49999


Q ss_pred             EecCCC-CCCCCcEEEeCCCCCCCeec-CceEeeccc---cceeEEEEceEEECCeeeceecC------CceEEEcCCCC
Q 015145          132 WLNRDP-DAEEGGEIVFGGVDPKHFKG-KHTYVPVTK---KGYWQFELGDILIGNQSTGVCEG------GCAAIVDSGTS  200 (412)
Q Consensus       132 ~l~~~~-~~~~~G~l~fGg~D~~~~~g-~l~~~p~~~---~~~w~v~~~~i~v~~~~~~~~~~------~~~~ivDSGts  200 (412)
                      ||.+.. +....|.|+|||.  .++.| .+.|+|+..   ..+|.|.+++|+||++.+.+...      ...++|||||+
T Consensus       240 cL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt  317 (431)
T PLN03146        240 CLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTT  317 (431)
T ss_pred             ECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCcc
Confidence            997532 2234799999984  44544 489999963   47899999999999998764322      24689999999


Q ss_pred             CcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeecccccc
Q 015145          201 LLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSA  280 (412)
Q Consensus       201 ~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (412)
                      ++++|+++|+++.+++...          +..+             +                                 
T Consensus       318 ~t~Lp~~~y~~l~~~~~~~----------~~~~-------------~---------------------------------  341 (431)
T PLN03146        318 LTLLPSDFYSELESAVEEA----------IGGE-------------R---------------------------------  341 (431)
T ss_pred             ceecCHHHHHHHHHHHHHH----------hccc-------------c---------------------------------
Confidence            9999999999998877432          0000             0                                 


Q ss_pred             CCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCCCCceeeeCCCC---CCCCcEEEEECCEEEEeCcccce
Q 015145          281 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI---PTMPNVSFTIGDKIFNLSPEQYI  357 (412)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~ipC~~~---~~lp~l~f~~gg~~~~i~p~~yl  357 (412)
                                                             ... ......+|...   ..+|.|+|+|+|.++.|+|++|+
T Consensus       342 ---------------------------------------~~~-~~~~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~~~~~~  381 (431)
T PLN03146        342 ---------------------------------------VSD-PQGLLSLCYSSTSDIKLPIITAHFTGADVKLQPLNTF  381 (431)
T ss_pred             ---------------------------------------CCC-CCCCCCccccCCCCCCCCeEEEEECCCeeecCcceeE
Confidence                                                   000 00112345321   36899999999999999999999


Q ss_pred             EEeccccccceeeeeeeccCCCCCCCcEEEccccccceEEEEeCCCCeEEEEec
Q 015145          358 LKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA  411 (412)
Q Consensus       358 ~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~  411 (412)
                      +....  ...|+..+. .      .+.||||+.|||++|++||++++|||||++
T Consensus       382 ~~~~~--~~~Cl~~~~-~------~~~~IlG~~~q~~~~vvyDl~~~~igFa~~  426 (431)
T PLN03146        382 VKVSE--DLVCFAMIP-T------SSIAIFGNLAQMNFLVGYDLESKTVSFKPT  426 (431)
T ss_pred             EEcCC--CcEEEEEec-C------CCceEECeeeEeeEEEEEECCCCEEeeecC
Confidence            97543  357975432 1      246999999999999999999999999986

>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall

Probab=100.00  E-value=8.8e-37  Score=309.06  Aligned_cols=308  Identities=15%  Similarity=0.174  Sum_probs=225.6

Q ss_pred             ccccce-eeecCccCccceEEecC--------------CCCCCCCCCCCCC------CCceEECCcEEEEE-EcCce-EE
Q 015145            3 NTLERL-VLALPHKISVSYLIPAV--------------PISGFHLQSAISL------FPAISIRGKSCEIN-YGSGS-IS   59 (412)
Q Consensus         3 ~t~~~~-~~~~p~t~s~~~wvp~~--------------~~c~~~~~y~p~~------Sst~~~~~~~~~i~-Y~~gs-~~   59 (412)
                      +||--. +-+..||||..+|++|.              ..|..+..|++.+      ++.+....+.+... |++|+ ..
T Consensus         3 ~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~t~   82 (362)
T cd05489           3 ITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGECAT   82 (362)
T ss_pred             ccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcEee
Confidence            344344 67889999999999554              3566666676542      22333334556544 77886 79


Q ss_pred             EEEEEEEEEECC--------eEEeeeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEE
Q 015145           60 GFFSQDNVEVGD--------VVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSF  131 (412)
Q Consensus        60 G~~~~D~v~lg~--------~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl  131 (412)
                      |.+++|+++++.        ..+.++.|||+.......+ ....|||||||+..++      ++.||..++. .+++||+
T Consensus        83 G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~FS~  154 (362)
T cd05489          83 GDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKFAL  154 (362)
T ss_pred             EEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcceEE
Confidence            999999999973        3688999999987532222 3347999999999888      6778887765 5799999


Q ss_pred             EecCCCCCCCCcEEEeCCCCCCCee------cCceEeecccc----ceeEEEEceEEECCeeecee--------cCCceE
Q 015145          132 WLNRDPDAEEGGEIVFGGVDPKHFK------GKHTYVPVTKK----GYWQFELGDILIGNQSTGVC--------EGGCAA  193 (412)
Q Consensus       132 ~l~~~~~~~~~G~l~fGg~D~~~~~------g~l~~~p~~~~----~~w~v~~~~i~v~~~~~~~~--------~~~~~~  193 (412)
                      ||.+..  ...|.|+|||.++.++.      +.+.|+|+.+.    .+|.|++++|+||++.+.+.        .....+
T Consensus       155 CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~  232 (362)
T cd05489         155 CLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGV  232 (362)
T ss_pred             EeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCcE
Confidence            998753  24799999999988774      78999999754    79999999999999987642        223569


Q ss_pred             EEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeee
Q 015145          194 IVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVV  273 (412)
Q Consensus       194 ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~  273 (412)
                      +|||||++++||+++|+++.+++.++          ++++.          ..+                          
T Consensus       233 iiDSGTs~t~lp~~~y~~l~~a~~~~----------~~~~~----------~~~--------------------------  266 (362)
T cd05489         233 KLSTVVPYTVLRSDIYRAFTQAFAKA----------TARIP----------RVP--------------------------  266 (362)
T ss_pred             EEecCCceEEECHHHHHHHHHHHHHH----------hcccC----------cCC--------------------------
Confidence            99999999999999999999988543          00000          000                          


Q ss_pred             eccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECC--EEEEe
Q 015145          274 EKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGD--KIFNL  351 (412)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg--~~~~i  351 (412)
                                                      .   ...+.+.|.....     ...|+....+|+|+|+|+|  +++.|
T Consensus       267 --------------------------------~---~~~~~~~C~~~~~-----~~~~~~~~~~P~it~~f~g~g~~~~l  306 (362)
T cd05489         267 --------------------------------A---AAVFPELCYPASA-----LGNTRLGYAVPAIDLVLDGGGVNWTI  306 (362)
T ss_pred             --------------------------------C---CCCCcCccccCCC-----cCCcccccccceEEEEEeCCCeEEEE
Confidence                                            0   0001135554332     1244445689999999976  99999


Q ss_pred             CcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEEEEeCCCCeEEEEec
Q 015145          352 SPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA  411 (412)
Q Consensus       352 ~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~  411 (412)
                      +|++|+++..+  ..+|+ +|...+..  ..+.||||+.|||++|++||.+++|||||++
T Consensus       307 ~~~ny~~~~~~--~~~Cl-~f~~~~~~--~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~  361 (362)
T cd05489         307 FGANSMVQVKG--GVACL-AFVDGGSE--PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS  361 (362)
T ss_pred             cCCceEEEcCC--CcEEE-EEeeCCCC--CCceEEEeeheecceEEEEECCCCEeecccC
Confidence            99999998643  45895 56654321  2468999999999999999999999999975

Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability

>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A

Probab=99.69  E-value=2.4e-16  Score=142.10  Aligned_cols=153  Identities=22%  Similarity=0.385  Sum_probs=103.6

Q ss_pred             eeEEEEceEEECCeeeceecC-------CceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhHHHHH
Q 015145          169 YWQFELGDILIGNQSTGVCEG-------GCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLL  241 (412)
Q Consensus       169 ~w~v~~~~i~v~~~~~~~~~~-------~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  241 (412)
                      +|.|.+.+|+||++.+.+...       ...++|||||++++||+++|+.+.+++...          +...        
T Consensus         1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~----------~~~~--------   62 (161)
T PF14541_consen    1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQ----------MGAP--------   62 (161)
T ss_dssp             SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHH----------HHTC--------
T ss_pred             CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHH----------hhhc--------
Confidence            478999999999999876543       467999999999999999999999998433          0000        


Q ss_pred             hhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCC
Q 015145          242 VSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP  321 (412)
Q Consensus       242 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~  321 (412)
                        +                                                           .+.+.-...-.++|.+.+
T Consensus        63 --~-----------------------------------------------------------~~~~~~~~~~~~~Cy~~~   81 (161)
T PF14541_consen   63 --G-----------------------------------------------------------VSREAPPFSGFDLCYNLS   81 (161)
T ss_dssp             --T-------------------------------------------------------------CEE---TT-S-EEEGG
T ss_pred             --c-----------------------------------------------------------cccccccCCCCCceeecc
Confidence              0                                                           000000112234677665


Q ss_pred             CCCCceeeeCCCCCCCCcEEEEEC-CEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEEEEe
Q 015145          322 NPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD  400 (412)
Q Consensus       322 ~~~~~~~ipC~~~~~lp~l~f~~g-g~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yvvfD  400 (412)
                      ...    .+ .....+|+|+|+|. |.+++|+|++|++...  ...+|......   .....+..|||..+|++++++||
T Consensus        82 ~~~----~~-~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~--~~~~Cla~~~~---~~~~~~~~viG~~~~~~~~v~fD  151 (161)
T PF14541_consen   82 SFG----VN-RDWAKFPTITLHFEGGADLTLPPENYFVQVS--PGVFCLAFVPS---DADDDGVSVIGNFQQQNYHVVFD  151 (161)
T ss_dssp             CS-----EE-TTEESS--EEEEETTSEEEEE-HHHHEEEEC--TTEEEESEEEE---TSTTSSSEEE-HHHCCTEEEEEE
T ss_pred             ccc----cc-cccccCCeEEEEEeCCcceeeeccceeeecc--CCCEEEEEEcc---CCCCCCcEEECHHHhcCcEEEEE
Confidence            521    01 12357999999998 7999999999999876  34689865543   12345788999999999999999


Q ss_pred             CCCCeEEEEe
Q 015145          401 SGKLRIGFAE  410 (412)
Q Consensus       401 ~e~~rIGfa~  410 (412)
                      ++++||||+|
T Consensus       152 l~~~~igF~~  161 (161)
T PF14541_consen  152 LENGRIGFAP  161 (161)
T ss_dssp             TTTTEEEEEE
T ss_pred             CCCCEEEEeC
Confidence            9999999997

>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases

Probab=99.66  E-value=5.4e-16  Score=129.97  Aligned_cols=100  Identities=37%  Similarity=0.424  Sum_probs=88.3

Q ss_pred             cccccceeeecCccCccceEEecCC----CCCCCCCC-CCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVP----ISGFHLQS-AISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKD   76 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~----~c~~~~~y-~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~   76 (412)
                      +|||+|.+....||||+++||++..    .|..+..| +|+.|++++..++.+.+.|++|++.|.++.|+|++++..+.+
T Consensus         5 vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~~~~~~   84 (109)
T cd05470           5 IGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGDIEVVG   84 (109)
T ss_pred             eCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECCEEECC
Confidence            6899999999999999999999872    23345566 999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeecCcccccCCccEEEec
Q 015145           77 QVFIEATREGSLTFLLARFDGIIGL  101 (412)
Q Consensus        77 ~~fg~~~~~~~~~~~~~~~dGilGL  101 (412)
                      +.||++....+..+.....+|||||
T Consensus        85 ~~fg~~~~~~~~~~~~~~~~GilGL  109 (109)
T cd05470          85 QAFGCATDEPGATFLPALFDGILGL  109 (109)
T ss_pred             EEEEEEEecCCccccccccccccCC
Confidence            9999999987654555678999997

This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site

>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A

Probab=99.65  E-value=2.4e-15  Score=136.37  Aligned_cols=130  Identities=24%  Similarity=0.273  Sum_probs=101.4

Q ss_pred             cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEEC----------------------CcEEEEEEcCce-E
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIR----------------------GKSCEINYGSGS-I   58 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~----------------------~~~~~i~Y~~gs-~   58 (412)
                      +|||++.+-...||+|..+|++|     ....|+|.+|+|++..                      .+.+.+.|++++ .
T Consensus         7 iGtP~~~~~lvvDtgs~l~W~~C-----~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y~~~y~~~s~~   81 (164)
T PF14543_consen    7 IGTPPQPFSLVVDTGSDLTWVQC-----PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPYSQSYGDGSSS   81 (164)
T ss_dssp             CTCTTEEEEEEEETT-SSEEEET---------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEEEEEETTTEEE
T ss_pred             eCCCCceEEEEEECCCCceEEcC-----CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccceeecCCCccc
Confidence            68999999999999999999999     6778999999998861                      148999999988 7


Q ss_pred             EEEEEEEEEEECC-----eEEeeeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEe
Q 015145           59 SGFFSQDNVEVGD-----VVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL  133 (412)
Q Consensus        59 ~G~~~~D~v~lg~-----~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l  133 (412)
                      .|.+++|+++++.     ..+.++.|||+....+..   ...+||||||+...+      ++.||.++   ..+.||+||
T Consensus        82 ~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~---~~~~GilGLg~~~~S------l~sQl~~~---~~~~FSyCL  149 (164)
T PF14543_consen   82 SGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF---YGADGILGLGRGPLS------LPSQLASS---SGNKFSYCL  149 (164)
T ss_dssp             EEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS---TTEEEEEE-SSSTTS------HHHHHHHH-----SEEEEEB
T ss_pred             cCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC---cCCCcccccCCCccc------HHHHHHHh---cCCeEEEEC
Confidence            9999999999975     567889999999876432   277999999998888      99999998   578999999


Q ss_pred             cCCCCCCCCcEEEeCC
Q 015145          134 NRDPDAEEGGEIVFGG  149 (412)
Q Consensus       134 ~~~~~~~~~G~l~fGg  149 (412)
                      .+ .+....|.|+||+
T Consensus       150 ~~-~~~~~~g~l~fG~  164 (164)
T PF14543_consen  150 PS-SSPSSSGFLSFGD  164 (164)
T ss_dssp             -S--SSSSEEEEEECS
T ss_pred             CC-CCCCCCEEEEeCc
Confidence            98 2344589999995

>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes

Probab=98.16  E-value=1.8e-06  Score=59.37  Aligned_cols=38  Identities=26%  Similarity=0.628  Sum_probs=36.3

Q ss_pred             ccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCC
Q 015145          284 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP  321 (412)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~  321 (412)
                      ..|++|+++|++++++|.++.|+++|.+.+++.|.++|
T Consensus         2 ~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP   39 (39)
T PF05184_consen    2 DECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP   39 (39)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred             CcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence            36999999999999999999999999999999999886

Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....

>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []

Probab=98.01  E-value=2.2e-06  Score=57.75  Aligned_cols=35  Identities=51%  Similarity=0.926  Sum_probs=33.5

Q ss_pred             ecchhhhhhhchhhHHHHHhhCCCccchhhccccc
Q 015145          223 SAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC  257 (412)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~  257 (412)
                      +++|+.+|++|++.|++++.++++|+.+|.+.++|
T Consensus         1 ~~~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C   35 (35)
T PF03489_consen    1 SDECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC   35 (35)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred             CcHHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence            36899999999999999999999999999999998

They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....

>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]

Probab=96.97  E-value=0.00097  Score=63.21  Aligned_cols=104  Identities=30%  Similarity=0.464  Sum_probs=75.8

Q ss_pred             HHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccch
Q 015145          208 VVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCS  287 (412)
Q Consensus       208 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (412)
                      .+....+.+...  ...+|+.++++|.+.|++.+.++.+|+.+|...+.|+-. +...  .-.+.    ++.+  ...|.
T Consensus        63 ~l~~~Ckkl~~~--~~~~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~-~~~~--~~~~~----~~~~--~~~C~  131 (218)
T KOG1340|consen   63 DLHAECKKLPKA--IPFECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSAS-AGPV--SEVFA----SQPA--AGECE  131 (218)
T ss_pred             HHHHHHHHhccc--chHHHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCcc-cchh--hhhhh----hccc--ccccH
Confidence            344446666554  222899999999999999999999999999999999961 1111  11111    1222  67899


Q ss_pred             hhhhHHHHHHhhhhh-hhhHHHHHHHhhhhccCCCC
Q 015145          288 ACEMAVVWVQNQLKQ-KQTKEKVLSYINELCDSLPN  322 (412)
Q Consensus       288 ~~~~~~~~~~~~~~~-~~t~~~~~~~~~~~c~~~~~  322 (412)
                      .|-++|.++...+.. +.++..+.....+.|-.++.
T Consensus       132 ~C~~~V~~~~~~l~d~~~~k~~~~~~~~~~ck~l~~  167 (218)
T KOG1340|consen  132 LCRETVTEADTKLQDKPKTKGKIVSLLLKSCKSLPN  167 (218)
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHhhccCCcc
Confidence            999999999999998 77777777777777755543

>smart00741 SapB Saposin (B) Domains

Probab=95.65  E-value=0.0084  Score=45.91  Aligned_cols=49  Identities=41%  Similarity=0.755  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhccccc
Q 015145          207 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC  257 (412)
Q Consensus       207 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~  257 (412)
                      .....+-..++.  .+.+.|+.+++.|.+.+++++.++.+|+.+|+..++|
T Consensus        28 ~~~~~~C~~~~~--~~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C   76 (76)
T smart00741       28 KALEKVCKKLPK--SLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC   76 (76)
T ss_pred             HHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence            456666667763  3789999999999999999999999999999999988

Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.

>smart00741 SapB Saposin (B) Domains

Probab=94.72  E-value=0.03  Score=42.76  Aligned_cols=37  Identities=32%  Similarity=0.697  Sum_probs=35.9

Q ss_pred             cchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCC
Q 015145          285 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP  321 (412)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~  321 (412)
                      .|..|+++|..++..+.++.+++++.+.+.++|..+|
T Consensus         2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~   38 (76)
T smart00741        2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLP   38 (76)
T ss_pred             cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC
Confidence            6999999999999999999999999999999999998

Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.

>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family

Probab=94.01  E-value=0.12  Score=41.12  Aligned_cols=81  Identities=15%  Similarity=0.260  Sum_probs=56.4

Q ss_pred             cceeeecCccCccceEEecC--CCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECCeEEeeeEEEEE
Q 015145            6 ERLVLALPHKISVSYLIPAV--PISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFIEA   82 (412)
Q Consensus         6 ~~~~~~~p~t~s~~~wvp~~--~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~~~~~~~fg~~   82 (412)
                      .+.+-...|||++..|++..  ..+..  .         ........+...+|. .......+.+++|+..++++.+..+
T Consensus        11 ~~~~~~llDTGa~~s~i~~~~~~~l~~--~---------~~~~~~~~~~~~~G~~~~~~~~~~~i~ig~~~~~~~~~~v~   79 (96)
T cd05483          11 GQPVRFLLDTGASTTVISEELAERLGL--P---------LTLGGKVTVQTANGRVRAARVRLDSLQIGGITLRNVPAVVL   79 (96)
T ss_pred             CEEEEEEEECCCCcEEcCHHHHHHcCC--C---------ccCCCcEEEEecCCCccceEEEcceEEECCcEEeccEEEEe
Confidence            35567789999999999985  22221  0         112234556777777 4556669999999999999888777


Q ss_pred             EeecCcccccCCccEEEeccC
Q 015145           83 TREGSLTFLLARFDGIIGLGF  103 (412)
Q Consensus        83 ~~~~~~~~~~~~~dGilGLg~  103 (412)
                      .....      +.+||||+.+
T Consensus        80 d~~~~------~~~gIlG~d~   94 (96)
T cd05483          80 PGDAL------GVDGLLGMDF   94 (96)
T ss_pred             CCccc------CCceEeChHH
Confidence            65421      5699999863

This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.

>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein

Probab=91.77  E-value=0.82  Score=39.33  Aligned_cols=25  Identities=12%  Similarity=0.093  Sum_probs=22.2

Q ss_pred             CcEEEccccccceEEEEeCCCCeEE
Q 015145          383 PLWILGDVFMGVYHTVFDSGKLRIG  407 (412)
Q Consensus       383 ~~~iLG~~fl~~~yvvfD~e~~rIG  407 (412)
                      ...|||..||+.+-.+.|+.+++|-
T Consensus        99 ~d~ILG~d~L~~~~~~ID~~~~~i~  123 (124)
T cd05479          99 VDFLIGLDMLKRHQCVIDLKENVLR  123 (124)
T ss_pred             cCEEecHHHHHhCCeEEECCCCEEE
Confidence            3459999999999999999999874

The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.

>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family

Probab=91.12  E-value=2.1  Score=36.75  Aligned_cols=38  Identities=13%  Similarity=0.154  Sum_probs=29.1

Q ss_pred             cccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHH
Q 015145          165 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI  212 (412)
Q Consensus       165 ~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l  212 (412)
                      .+.+++.++   +.++|++..       ++||||++.+.++.+..+++
T Consensus         7 ~~~g~~~v~---~~InG~~~~-------flVDTGAs~t~is~~~A~~L   44 (121)
T TIGR02281         7 DGDGHFYAT---GRVNGRNVR-------FLVDTGATSVALNEEDAQRL   44 (121)
T ss_pred             cCCCeEEEE---EEECCEEEE-------EEEECCCCcEEcCHHHHHHc
Confidence            345566554   677888653       99999999999999987764

This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).

>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]

Probab=90.50  E-value=0.23  Score=47.27  Aligned_cols=48  Identities=29%  Similarity=0.536  Sum_probs=41.6

Q ss_pred             HHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCC
Q 015145          214 HAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNG  261 (412)
Q Consensus       214 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~  261 (412)
                      ...+.-+.+.+.||..|++|.+.+++++..++.|..+|.+.+.|+.+.
T Consensus       160 ~~ck~l~~~~~~Ck~fV~~y~p~~i~~l~~~~~p~~vC~~l~~C~~~~  207 (218)
T KOG1340|consen  160 KSCKSLPNYEQKCKQFVHEYGPQLITLLEEGLDPHDVCTALGACPPAA  207 (218)
T ss_pred             hhccCCccchhHHHHHHHHhccHHHHHHHHhhCchhHHHHhhcCCccc
Confidence            334555667788999999999999999999999999999999999654

>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses)

Probab=85.60  E-value=2.4  Score=37.21  Aligned_cols=27  Identities=22%  Similarity=0.221  Sum_probs=24.2

Q ss_pred             cEEEccccccceEEEEeCCCCeEEEEe
Q 015145          384 LWILGDVFMGVYHTVFDSGKLRIGFAE  410 (412)
Q Consensus       384 ~~iLG~~fl~~~yvvfD~e~~rIGfa~  410 (412)
                      ..|||.+||+.+....|..+++|-|-.
T Consensus       105 DvILGm~WL~~~~~~IDw~~k~v~f~~  131 (135)
T PF08284_consen  105 DVILGMDWLKKHNPVIDWATKTVTFNS  131 (135)
T ss_pred             eeEeccchHHhCCCEEEccCCEEEEeC
Confidence            359999999999999999999998854

These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.

>PF13650 Asp_protease_2: Aspartyl protease

Probab=81.22  E-value=2  Score=33.59  Aligned_cols=29  Identities=10%  Similarity=0.322  Sum_probs=24.1

Q ss_pred             EEECCeeeceecCCceEEEcCCCCCcccCHHHHHHH
Q 015145          177 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI  212 (412)
Q Consensus       177 i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l  212 (412)
                      ++++|+++.       +++|||++...++.+.++++
T Consensus         3 v~vng~~~~-------~liDTGa~~~~i~~~~~~~l   31 (90)
T PF13650_consen    3 VKVNGKPVR-------FLIDTGASISVISRSLAKKL   31 (90)
T ss_pred             EEECCEEEE-------EEEcCCCCcEEECHHHHHHc
Confidence            566777653       99999999999999988776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	412
1qdm_A	478	Crystal Structure Of Prophytepsin, A Zymogen Of A B		1e-134
1b5f_A	239	Native Cardosin A From Cynara Cardunculus L. Length		3e-53
1lya_B	241	Crystal Structures Of Native And Inhibited Forms Of		3e-36
1lya_B	241	Crystal Structures Of Native And Inhibited Forms Of		8e-25
1tzs_A	351	Crystal Structure Of An Activation Intermediate Of		1e-34
1tzs_A	351	Crystal Structure Of An Activation Intermediate Of		4e-16
2x0b_A	383	Crystal Structure Of Human Angiotensinogen Complexe		1e-33
2x0b_A	383	Crystal Structure Of Human Angiotensinogen Complexe		7e-14
2bks_A	340	Crystal Structure Of Renin-Pf00074777 Complex Lengt		1e-33
2bks_A	340	Crystal Structure Of Renin-Pf00074777 Complex Lengt		7e-14
3d91_A	341	Human Renin In Complex With Remikiren Length = 341		1e-33
3d91_A	341	Human Renin In Complex With Remikiren Length = 341		7e-14
3rfi_A	108	Crystal Structure Of The Saposin-Like Domain Of Pla		1e-33
2g24_A	333	Ketopiperazine-Based Renin Inhibitors: Optimization		1e-33
2g24_A	333	Ketopiperazine-Based Renin Inhibitors: Optimization		7e-14
1hrn_A	337	High Resolution Crystal Structures Of Recombinant H		1e-33
1hrn_A	337	High Resolution Crystal Structures Of Recombinant H		7e-14
2i4q_A	336	Human ReninPF02342674 COMPLEX Length = 336		2e-33
2i4q_A	336	Human ReninPF02342674 COMPLEX Length = 336		7e-14
3vcm_A	335	Crystal Structure Of Human Prorenin Length = 335		7e-33
3vcm_A	335	Crystal Structure Of Human Prorenin Length = 335		8e-14
1smr_A	335	The 3-D Structure Of Mouse Submaxillary Renin Compl		2e-30
1smr_A	335	The 3-D Structure Of Mouse Submaxillary Renin Compl		3e-16
1g0v_A	329	The Structure Of Proteinase A Complexed With A Ia3		3e-28
1g0v_A	329	The Structure Of Proteinase A Complexed With A Ia3		1e-09
1dp5_A	329	The Structure Of Proteinase A Complexed With A Ia3		3e-28
1dp5_A	329	The Structure Of Proteinase A Complexed With A Ia3		1e-09
2jxr_A	329	Structure Of Yeast Proteinase A Length = 329		3e-28
2jxr_A	329	Structure Of Yeast Proteinase A Length = 329		1e-09
1htr_B	329	Crystal And Molecular Structures Of Human Progastri		4e-28
1htr_B	329	Crystal And Molecular Structures Of Human Progastri		5e-11
3psg_A	370	The High Resolution Crystal Structure Of Porcine Pe		1e-27
3psg_A	370	The High Resolution Crystal Structure Of Porcine Pe		4e-15
5pep_A	326	X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dim		1e-27
5pep_A	326	X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dim		3e-15
1psa_A	326	Structure Of A Pepsin(Slash)renin Inhibitor Complex		1e-27
1psa_A	326	Structure Of A Pepsin(Slash)renin Inhibitor Complex		3e-15
3pep_A	326	Revised 2.3 Angstroms Structure Of Porcine Pepsin.		2e-27
3pep_A	326	Revised 2.3 Angstroms Structure Of Porcine Pepsin.		4e-15
2psg_A	370	Refined Structure Of Porcine Pepsinogen At 1.8 Angs		2e-27
2psg_A	370	Refined Structure Of Porcine Pepsinogen At 1.8 Angs		4e-15
1f34_A	326	Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bou		2e-27
1f34_A	326	Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bou		3e-15
4pep_A	326	The Molecular And Crystal Structures Of Monoclinic		2e-27
4pep_A	326	The Molecular And Crystal Structures Of Monoclinic		4e-15
1pso_E	326	The Crystal Structure Of Human Pepsin And Its Compl		1e-26
1pso_E	326	The Crystal Structure Of Human Pepsin And Its Compl		2e-13
1flh_A	326	Crystal Structure Of Human Uropepsin At 2.45 A Reso		1e-26
1flh_A	326	Crystal Structure Of Human Uropepsin At 2.45 A Reso		5e-13
4aa9_A	320	Camel Chymosin At 1.6a Resolution Length = 320		6e-26
4aa9_A	320	Camel Chymosin At 1.6a Resolution Length = 320		2e-09
1czi_E	323	Chymosin Complex With The Inhibitor Cp-113972 Lengt		2e-25
1czi_E	323	Chymosin Complex With The Inhibitor Cp-113972 Lengt		1e-09
1b5f_B	87	Native Cardosin A From Cynara Cardunculus L. Length		2e-25
3cms_A	323	Engineering Enzyme Sub-Site Specificity: Preparatio		3e-25
3cms_A	323	Engineering Enzyme Sub-Site Specificity: Preparatio		1e-09
1am5_A	324	The Crystal Structure And Proposed Amino Acid Seque		5e-25
1am5_A	324	The Crystal Structure And Proposed Amino Acid Seque		8e-11
3qrv_A	336	Crystal Structure Of Plasmepsin I (Pmi) From Plasmo		3e-18
3qrv_A	336	Crystal Structure Of Plasmepsin I (Pmi) From Plasmo		5e-05
2anl_A	327	X-Ray Crystal Structure Of The Aspartic Protease Pl		4e-16
2anl_A	327	X-Ray Crystal Structure Of The Aspartic Protease Pl		5e-04
3oad_A	166	Design And Optimization Of New Piperidines As Renin		5e-15
1miq_A	375	Crystal Structure Of Proplasmepsin From The Human M		1e-14
1miq_A	375	Crystal Structure Of Proplasmepsin From The Human M		1e-04
3f9q_A	329	Re-Refinement Of Uncomplexed Plasmepsin Ii From Pla		1e-14
3f9q_A	329	Re-Refinement Of Uncomplexed Plasmepsin Ii From Pla		4e-04
1m43_A	331	Crystal Structure Of Pmii In Complex With Pepstatin		1e-14
1m43_A	331	Crystal Structure Of Pmii In Complex With Pepstatin		4e-04
2bju_A	453	Plasmepsin Ii Complexed With A Highly Active Achira		3e-14
2bju_A	453	Plasmepsin Ii Complexed With A Highly Active Achira		4e-04
1pfz_A	380	Proplasmepsin Ii From Plasmodium Falciparum Length		3e-14
1pfz_A	380	Proplasmepsin Ii From Plasmodium Falciparum Length		4e-04
1sme_A	329	Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From P		3e-14
1sme_A	329	Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From P		4e-04
1ls5_A	328	Crystal Structure Of Plasmepsin Iv From P. Falcipar		4e-14
1lf3_A	331	Crystal Structure Of Plasmepsin Ii From P Falciparu		4e-14
1lf3_A	331	Crystal Structure Of Plasmepsin Ii From P Falciparu		4e-04
1qs8_B	329	Crystal Structure Of The P. Vivax Aspartic Proteina		5e-14
1qs8_B	329	Crystal Structure Of The P. Vivax Aspartic Proteina		1e-04
3oad_B	176	Design And Optimization Of New Piperidines As Renin		6e-14
1yg9_A	330	The Structure Of Mutant (N93q) Of Bla G 2 Length =		7e-14
1yg9_A	330	The Structure Of Mutant (N93q) Of Bla G 2 Length =		3e-07
3liz_A	334	Crystal Structure Of Bla G 2 Complexed With Fab 4c3		7e-14
3liz_A	334	Crystal Structure Of Bla G 2 Complexed With Fab 4c3		4e-07
1uh7_A	325	Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt		2e-09
3apr_E	325	Binding Of A Reduced Peptide Inhibitor To The Aspar		2e-09
2ewy_A	383	Crystal Structure Of Human Bace2 In Complex With A		6e-09
3fns_A	332	Crystal Structure Of Histo-Aspartic Protease (Hap)		8e-09
3fns_A	332	Crystal Structure Of Histo-Aspartic Protease (Hap)		2e-04
3qvc_A	451	Crystal Structure Of Histo-Aspartic Protease (Hap)		1e-08
3qvc_A	451	Crystal Structure Of Histo-Aspartic Protease (Hap)		3e-04
1eag_A	342	Secreted Aspartic Proteinase (Sap2) From Candida Al		2e-08
1zap_A	342	Secreted Aspartic Protease From C. Albicans Length		4e-08
2h6s_A	340	Secreted Aspartic Proteinase (sap) 3 From Candida A		2e-07
1j71_A	334	Structure Of The Extracellular Aspartic Proteinase		2e-07
2qzw_A	341	Secreted Aspartic Proteinase (Sap) 1 From Candida A		1e-06
1wkr_A	340	Crystal Structure Of Aspartic Proteinase From Irpex		3e-06
2qzx_A	342	Secreted Aspartic Proteinase (Sap) 5 From Candida A		3e-06
3fv3_A	339	Secreted Aspartic Protease 1 From Candida Parapsilo		6e-06
3bra_A	409	Bace-1 Complexed With Compound 1 Length = 409		2e-05
3cib_A	390	Structure Of Bace Bound To Sch727596 Length = 390		3e-05
2fdp_A	388	Crystal Structure Of Beta-Secretase Complexed With		3e-05
1fkn_A	391	Structure Of Beta-Secretase Complexed With Inhibito		3e-05
4ewo_A	386	Design And Synthesis Of Potent Hydroxyethylamine (H		3e-05
3vv6_A	416	Crystal Structure Of Beta Secetase In Complex With		3e-05
4dpf_A	391	Bace-1 In Complex With A Hea-Macrocyclic Type Inhib		3e-05
1w50_A	411	Apo Structure Of Bace (beta Secretase) Length = 411		3e-05
2zjn_A	405	Crystal Structure Of The Human Bace1 Catalytic Doma		3e-05
2wjo_A	412	Human Bace (Beta Secretase) In Complex With Cyclohe		3e-05
2zjh_A	405	Crystal Structure Of The Human Bace1 Catalytic Doma		3e-05
3ckp_A	412	Crystal Structure Of Bace-1 In Complex With Inhibit		3e-05
2hm1_A	406	Crystal Structure Of Human Beta-Secretase (Bace) In		3e-05
3exo_A	413	Crystal Structure Of Bace1 Bound To Inhibitor Lengt		3e-05
3kmx_A	395	Structure Of Bace Bound To Sch346572 Length = 395		3e-05
2zhr_A	411	Crystal Structure Of Bace1 In Complex With Om99-2 A		3e-05
3udh_A	404	Crystal Structure Of Bace With Compound 1 Length =		3e-05
3r1g_B	402	Structure Basis Of Allosteric Inhibition Of Bace1 B		3e-05
1tqf_A	405	Crystal Structure Of Human Beta Secretase Complexed		3e-05
3u6a_A	390	Rational Design And Synthesis Of Aminopiperazinones		3e-05
1sgz_A	389	Crystal Structure Of Unbound Beta-Secretase Catalyt		3e-05
3l58_A	414	Structure Of Bace Bound To Sch589432 Length = 414		3e-05
2zjk_A	405	Crystal Structure Of The Human Bace1 Catalytic Doma		3e-05
2zji_A	405	Crystal Structure Of The Human Bace1 Catalytic Doma		3e-05
3dm6_A	406	Beta-Secretase 1 Complexed With Statine-Based Inhib		3e-05
3ixk_A	405	Potent Beta-Secretase 1 Inhibitor Length = 405		3e-05
2qk5_A	395	Structure Of Bace1 Bound To Sch626485 Length = 395		3e-05
4b1d_A	388	New Aminoimidazoles As Bace-1 Inhibitors: From Rati		3e-05
3tpj_A	433	Apo Structure Of Bace1 Length = 433		3e-05
3hvg_A	411	Structure Of Bace (Beta Secretase) In Complex With		3e-05
2qzl_A	411	Crystal Structure Of Human Beta Secretase Complexed		3e-05
1ym2_A	402	Crystal Structure Of Human Beta Secretase Complexed		3e-05
1ym4_A	408	Crystal Structure Of Human Beta Secretase Complexed		3e-05
3qi1_A	408	Design And Synthesis Of Hydroxyethylamine (Hea) Bac		3e-05
2qu2_A	415	Bace1 With Compound 1 Length = 415		3e-05
2of0_A	402	X-Ray Crystal Structure Of Beta Secretase Complexed		3e-05
3tpr_A	433	Crystal Structure Of Bace1 Complexed With An Inhibi		3e-05
2va5_A	455	X-Ray Crystal Structure Of Beta Secretase Complexed		4e-05
3lpi_A	455	Structure Of Bace Bound To Sch745132 Length = 455		4e-05
2hiz_A	455	Crystal Structure Of Human Beta-Secretase (Bace) In		4e-05
2q11_A	388	Structure Of Bace Complexed To Compound 1 Length =		4e-05
2q15_A	385	Structure Of Bace Complexed To Compound 3a Length =		4e-05
2vie_A	392	Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2-		4e-05
2zjj_A	405	Crystal Structure Of The Human Bace1 Catalytic Doma		2e-04
2rmp_A	361	Rmp-Pepstatin A Complex Length = 361		6e-04

>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley Vacuolar Aspartic Proteinase. Length = 478

Iteration: 1
 Score =  475 bits (1222), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/371 (62%), Positives = 286/371 (77%), Gaps = 3/371 (0%)
Query: 45  RGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFR 104
            GK   I YG+GSI+G+FS+              FIEAT+E  +TFL+A+FDGI+GLGF+
Sbjct: 108 NGKPAAIQYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFK 167
Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV 164
           EI+VG AVPVW  M+EQGLVS+ VFSFWLNR  D  EGGEI+FGG+DPKH+ G+HTYVPV
Sbjct: 168 EISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPV 227
Query: 165 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSA 224
           T+KGYWQF++GD+L+G +STG C GGCAAI DSGTSLLAGPT ++TEIN  IG  GVVS 
Sbjct: 228 TQKGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQ 287
Query: 225 ECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGD-- 282
           ECK +VSQYG  I DLL++   P+K+C Q+GLC F+G   VS GI++VV+ E V +    
Sbjct: 288 ECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLR 347
Query: 283 -SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVS 341
              +CSACEMAVVW+QNQL Q +T++ +L Y+N+LC+ LP+PMGES +DC  + +MP++ 
Sbjct: 348 ADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIE 407
Query: 342 FTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDS 401
           FTIG K F L PE+YILK GEG A  CISGF A D+PPPRGPLWILGDVFMG YHTVFD 
Sbjct: 408 FTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDY 467
Query: 402 GKLRIGFAEAA 412
           GKLRIGFA+AA
Sbjct: 468 GKLRIGFAKAA 478

>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L. Length = 239

Iteration: 1
 Score =  205 bits (522), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/167 (60%), Positives = 119/167 (71%), Gaps = 4/167 (2%)
Query: 51  INYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGD 110
           I YG+GSI+GFFSQ              FIEAT E    FL   FDGI+GL F+ I+V  
Sbjct: 75  IIYGTGSITGFFSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLSFQTISV-- 132
Query: 111 AVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYW 170
             PVW NM+ QGLV E  FSFWLNR+ D EEGGE+VFGG+DP HF+G HTYVPVT + YW
Sbjct: 133 --PVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYW 190
Query: 171 QFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 217
           QF +GD+LIG++STG C  GC A  DSGTSLL+GPT +VT+INHAIG
Sbjct: 191 QFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIG 237

>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human Cathepsin D: Implications For Lysosomal Targeting And Drug Design Length = 241

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 104/147 (70%), Gaps = 1/147 (0%)
Query: 79  FIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPD 138
           F EAT++  +TF+ A+FDGI+G+ +  I+V + +PV+DN+++Q LV + +FSF+L+RDPD
Sbjct: 10  FGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPD 69
Query: 139 AEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSG 198
           A+ GGE++ GG D K++KG  +Y+ VT+K YWQ  L  + + +  T +C+ GC AIVD+G
Sbjct: 70  AQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLT-LCKEGCEAIVDTG 128
Query: 199 TSLLAGPTPVVTEINHAIGGEGVVSAE 225
           TSL+ GP   V E+  AIG   ++  E
Sbjct: 129 TSLMVGPVDEVRELQKAIGAVPLIQGE 155

>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human Cathepsin D: Implications For Lysosomal Targeting And Drug Design Length = 241

Iteration: 1
 Score =  111 bits (277), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 66/94 (70%)
Query: 319 SLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLP 378
           ++P   GE +I C+++ T+P ++  +G K + LSPE Y LK  +    +C+SGFM  D+P
Sbjct: 148 AVPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIP 207
Query: 379 PPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
           PP GPLWILGDVF+G Y+TVFD    R+GFAEAA
Sbjct: 208 PPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 241

>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of Cathepsin E Length = 351

Iteration: 1
 Score =  143 bits (361), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 108/187 (57%), Gaps = 4/187 (2%)
Query: 43  SIRGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLG 102
           S  G+S  I YG+GS+SG                  F E+  E   TF+ A FDGI+GLG
Sbjct: 76  SQPGQSFSIQYGTGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLG 135
Query: 103 FREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYV 162
           +  +AVG   PV+DNM+ Q LV   +FS +++ +P+   G E++FGG D  HF G   +V
Sbjct: 136 YPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWV 195
Query: 163 PVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG---E 219
           PVTK+ YWQ  L +I +G  +   C  GC AIVD+GTSL+ GP+  + ++ +AIG    +
Sbjct: 196 PVTKQAYWQIALDNIQVGG-TVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPVD 254
Query: 220 GVVSAEC 226
           G  + EC
Sbjct: 255 GEYAVEC 261

>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of Cathepsin E Length = 351

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 52/87 (59%)
Query: 325 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPL 384
           GE  ++C  +  MP+V+FTI    + LSP  Y L       + C SGF   D+ PP GPL
Sbjct: 255 GEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPL 314
Query: 385 WILGDVFMGVYHTVFDSGKLRIGFAEA 411
           WILGDVF+  +++VFD G  R+G A A
Sbjct: 315 WILGDVFIRQFYSVFDRGNNRVGLAPA 341

>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With Renin Length = 383

Iteration: 1
 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 109/176 (61%), Gaps = 4/176 (2%)
Query: 46  GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFRE 105
           G    + Y +G++SGF SQ              F E T   +L F+LA FDG++G+GF E
Sbjct: 119 GTELTLRYSTGTVSGFLSQDIITVGGITVTQM-FGEVTEMPALPFMLAEFDGVVGMGFIE 177
Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE--GGEIVFGGVDPKHFKGKHTYVP 163
            A+G   P++DN++ QG++ E+VFSF+ NRD +  +  GG+IV GG DP+H++G   Y+ 
Sbjct: 178 QAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYIN 237
Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 219
           + K G WQ ++  + +G+ ST +CE GC A+VD+G S ++G T  + ++  A+G +
Sbjct: 238 LIKTGVWQIQMKGVSVGS-STLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAK 292

>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With Renin Length = 383

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 311 SYINELCDSL--PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 368
           S I +L ++L     + + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C
Sbjct: 280 SSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLC 339
Query: 369 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
                A D+PPP GP W LG  F+  ++T FD    RIGFA A
Sbjct: 340 TLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA 382

>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex Length = 340

Iteration: 1
 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 109/177 (61%), Gaps = 4/177 (2%)
Query: 45  RGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFR 104
            G    + Y +G++SGF SQ              F E T   +L F+LA FDG++G+GF 
Sbjct: 75  NGTELTLRYSTGTVSGFLSQDIITVGGITVTQM-FGEVTEMPALPFMLAEFDGVVGMGFI 133
Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE--GGEIVFGGVDPKHFKGKHTYV 162
           E A+G   P++DN++ QG++ E+VFSF+ NRD +  +  GG+IV GG DP+H++G   Y+
Sbjct: 134 EQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYI 193
Query: 163 PVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 219
            + K G WQ ++  + +G+ ST +CE GC A+VD+G S ++G T  + ++  A+G +
Sbjct: 194 NLIKTGVWQIQMKGVSVGS-STLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAK 249

>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex Length = 340

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 311 SYINELCDSL--PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 368
           S I +L ++L     + + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C
Sbjct: 237 SSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLC 296
Query: 369 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
                A D+PPP GP W LG  F+  ++T FD    RIGFA A
Sbjct: 297 TLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA 339

>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren Length = 341

Iteration: 1
 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 109/177 (61%), Gaps = 4/177 (2%)
Query: 45  RGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFR 104
            G    + Y +G++SGF SQ              F E T   +L F+LA FDG++G+GF 
Sbjct: 75  NGTELTLRYSTGTVSGFLSQDIITVGGITVTQM-FGEVTEMPALPFMLAEFDGVVGMGFI 133
Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE--GGEIVFGGVDPKHFKGKHTYV 162
           E A+G   P++DN++ QG++ E+VFSF+ NRD +  +  GG+IV GG DP+H++G   Y+
Sbjct: 134 EQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYI 193
Query: 163 PVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 219
            + K G WQ ++  + +G+ ST +CE GC A+VD+G S ++G T  + ++  A+G +
Sbjct: 194 NLIKTGVWQIQMKGVSVGS-STLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAK 249

>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren Length = 341

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 311 SYINELCDSL--PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 368
           S I +L ++L     + + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C
Sbjct: 237 SSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLC 296
Query: 369 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
                A D+PPP GP W LG  F+  ++T FD    RIGFA A
Sbjct: 297 TLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA 339

>pdb|3RFI|A Chain A, Crystal Structure Of The Saposin-Like Domain Of Plant Aspartic Protease From Solanum Tuberosum Length = 108

Iteration: 1
 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 86/104 (82%), Gaps = 2/104 (1%)
Query: 220 GVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN-- 277
            +VS ECK +VSQYG++IWDLLVSG+ P++VC Q GLC  +GA++VS+ IKTVVE+E   
Sbjct: 5   AIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIKTVVERETEG 64
Query: 278 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 321
            S G++ +C+ACEMAVVW+QNQLKQ+ TKEKVL Y+N+LC+ +P
Sbjct: 65  SSVGEAPLCTACEMAVVWMQNQLKQEGTKEKVLEYVNQLCEKIP 108

>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The "c" Ring Length = 333

Iteration: 1
 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 109/177 (61%), Gaps = 4/177 (2%)
Query: 45  RGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFR 104
            G    + Y +G++SGF SQ              F E T   +L F+LA FDG++G+GF 
Sbjct: 68  NGTELTLRYSTGTVSGFLSQDIITVGGITVTQM-FGEVTEMPALPFMLAEFDGVVGMGFI 126
Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE--GGEIVFGGVDPKHFKGKHTYV 162
           E A+G   P++DN++ QG++ E+VFSF+ NRD +  +  GG+IV GG DP+H++G   Y+
Sbjct: 127 EQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYI 186
Query: 163 PVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 219
            + K G WQ ++  + +G+ ST +CE GC A+VD+G S ++G T  + ++  A+G +
Sbjct: 187 NLIKTGVWQIQMKGVSVGS-STLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAK 242

>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The "c" Ring Length = 333

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 311 SYINELCDSL--PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 368
           S I +L ++L     + + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C
Sbjct: 230 SSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLC 289
Query: 369 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
                A D+PPP GP W LG  F+  ++T FD    RIGFA A
Sbjct: 290 TLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA 332

>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human Renin In Complex With Polyhydroxymonoamide Inhibitors Length = 337

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 109/177 (61%), Gaps = 4/177 (2%)
Query: 45  RGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFR 104
            G    + Y +G++SGF SQ              F E T   +L F+LA FDG++G+GF 
Sbjct: 72  NGTELTLRYSTGTVSGFLSQDIITVGGITVTQM-FGEVTEMPALPFMLAEFDGVVGMGFI 130
Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE--GGEIVFGGVDPKHFKGKHTYV 162
           E A+G   P++DN++ QG++ E+VFSF+ NRD +  +  GG+IV GG DP+H++G   Y+
Sbjct: 131 EQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYI 190
Query: 163 PVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 219
            + K G WQ ++  + +G+ ST +CE GC A+VD+G S ++G T  + ++  A+G +
Sbjct: 191 NLIKTGVWQIQMKGVSVGS-STLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAK 246

>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human Renin In Complex With Polyhydroxymonoamide Inhibitors Length = 337

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 311 SYINELCDSL--PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 368
           S I +L ++L     + + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C
Sbjct: 234 SSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLC 293
Query: 369 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
                A D+PPP GP W LG  F+  ++T FD    RIGFA A
Sbjct: 294 TLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA 336

>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX Length = 336

Iteration: 1
 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 109/177 (61%), Gaps = 4/177 (2%)
Query: 45  RGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFR 104
            G    + Y +G++SGF SQ              F E T   +L F+LA FDG++G+GF 
Sbjct: 71  NGTELTLRYSTGTVSGFLSQDIITVGGITVTQM-FGEVTEMPALPFMLAEFDGVVGMGFI 129
Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE--GGEIVFGGVDPKHFKGKHTYV 162
           E A+G   P++DN++ QG++ E+VFSF+ NRD +  +  GG+IV GG DP+H++G   Y+
Sbjct: 130 EQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYI 189
Query: 163 PVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 219
            + K G WQ ++  + +G+ ST +CE GC A+VD+G S ++G T  + ++  A+G +
Sbjct: 190 NLIKTGVWQIQMKGVSVGS-STLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAK 245

>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX Length = 336

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 311 SYINELCDSL--PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 368
           S I +L ++L     + + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C
Sbjct: 233 SSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLC 292
Query: 369 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
                A D+PPP GP W LG  F+  ++T FD    RIGFA A
Sbjct: 293 TLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA 335

>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin Length = 335

Iteration: 1
 Score =  138 bits (347), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 107/175 (61%), Gaps = 5/175 (2%)
Query: 45  RGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFR 104
            G    + Y +G++SGF SQ              F E T   +L F+LA FDG++G+GF 
Sbjct: 75  NGTELTLRYSTGTVSGFLSQDIITVGGITVTQM-FGEVTEMPALPFMLAEFDGVVGMGFI 133
Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV 164
           E A+G   P++DN++ QG++ E+VFSF+ NRD     GG+IV GG DP+H++G   Y+ +
Sbjct: 134 EQAIGRVTPIFDNIISQGVLKEDVFSFYYNRD---SLGGQIVLGGSDPQHYEGNFHYINL 190
Query: 165 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 219
            K G WQ ++  + +G+ ST +CE GC A+VD+G S ++G T  + ++  A+G +
Sbjct: 191 IKTGVWQIQMKGVSVGS-STLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAK 244

>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin Length = 335

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 311 SYINELCDSL--PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 368
           S I +L ++L     + + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C
Sbjct: 232 SSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLC 291
Query: 369 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
                A D+PPP GP W LG  F+  ++T FD    RIGFA A
Sbjct: 292 TLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA 334

>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed With A Decapeptide Inhibitor Ch-66 Based On The 4-16 Fragment Of Rat Angiotensinogen Length = 335

Iteration: 1
 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 104/175 (59%), Gaps = 3/175 (1%)
Query: 45  RGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFR 104
            G    I+YGSG + GF SQ              F E T+   + F+LA+FDG++G+GF 
Sbjct: 72  NGDDFTIHYGSGRVKGFLSQDSVTVGGITVTQT-FGEVTQLPLIPFMLAQFDGVLGMGFP 130
Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV 164
             AVG   PV+D+++ QG++ E+VFS + NR P    GGE+V GG DP+H++G   YV +
Sbjct: 131 AQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGPHL-LGGEVVLGGSDPQHYQGDFHYVSL 189
Query: 165 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 219
           +K   WQ  +  + +G+ ST +CE GC  +VD+G+S ++ PT  +  I  A+G +
Sbjct: 190 SKTDSWQITMKGVSVGS-STLLCEEGCEVVVDTGSSFISAPTSSLKLIMQALGAK 243

>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed With A Decapeptide Inhibitor Ch-66 Based On The 4-16 Fragment Of Rat Angiotensinogen Length = 335

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 54/88 (61%)
Query: 324 MGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGP 383
           + E ++ C ++PT+P++SF +G + + LS   Y+L+      ++C     A D+PPP GP
Sbjct: 247 LHEYVVSCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGP 306
Query: 384 LWILGDVFMGVYHTVFDSGKLRIGFAEA 411
           +W+LG  F+  ++T FD    RIGFA A
Sbjct: 307 VWVLGATFIRKFYTEFDRHNNRIGFALA 334

>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant, Mvv Length = 329

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 107/201 (53%), Gaps = 8/201 (3%)
Query: 45  RGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFR 104
            G    I YG+GS+ G+ SQ              F EAT E  LTF   +FDGI+GLG+ 
Sbjct: 68  NGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYD 127
Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWL-NRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
            I+V   VP + N ++Q L+ E+ F+F+L +   D E GGE  FGG+D   FKG  T++P
Sbjct: 128 TISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLP 187
Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE---- 219
           V +K YW+ +   I +G++   +   G A  +D+GTSL+  P+ +   IN  IG +    
Sbjct: 188 VRRKAYWEVKFEGIGLGDEYAELESHGAA--IDTGTSLITLPSGLAEMINAEIGAKKGST 245
Query: 220 GVVSAECKLVVSQYGDLIWDL 240
           G  + +C        DLI++ 
Sbjct: 246 GQYTLDCN-TRDNLPDLIFNF 265

>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant, Mvv Length = 329

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 325 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPL 384
           G+  +DC+    +P++ F      F + P  Y L+    ++  CIS     D P P GPL
Sbjct: 246 GQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLE----VSGSCISAITPMDFPEPVGPL 301
Query: 385 WILGDVFMGVYHTVFDSGKLRIGFAEA 411
            I+GD F+  Y++++D G   +G A+A
Sbjct: 302 AIVGDAFLRKYYSIYDLGNNAVGLAKA 328

>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant Inhibitor Length = 329

Iteration: 1
 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 3/176 (1%)
Query: 45  RGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFR 104
            G    I YG+GS+ G+ SQ              F EAT E  LTF   +FDGI+GLG+ 
Sbjct: 68  NGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYD 127
Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWL-NRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
            I+V   VP + N ++Q L+ E+ F+F+L +   D E GGE  FGG+D   FKG  T++P
Sbjct: 128 TISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLP 187
Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 219
           V +K YW+ +   I +G++   +   G A  +D+GTSL+  P+ +   IN  IG +
Sbjct: 188 VRRKAYWEVKFEGIGLGDEYAELESHGAA--IDTGTSLITLPSGLAEMINAEIGAK 241

>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant Inhibitor Length = 329

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 325 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPL 384
           G+  +DC+    +P++ F      F + P  Y L+    ++  CIS     D P P GPL
Sbjct: 246 GQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLE----VSGSCISAITPMDFPEPVGPL 301
Query: 385 WILGDVFMGVYHTVFDSGKLRIGFAEA 411
            I+GD F+  Y++++D G   +G A+A
Sbjct: 302 AIVGDAFLRKYYSIYDLGNNAVGLAKA 328

>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A Length = 329

Iteration: 1
 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 3/176 (1%)
Query: 45  RGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFR 104
            G    I YG+GS+ G+ SQ              F EAT E  LTF   +FDGI+GLG+ 
Sbjct: 68  NGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYD 127
Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWL-NRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
            I+V   VP + N ++Q L+ E+ F+F+L +   D E GGE  FGG+D   FKG  T++P
Sbjct: 128 TISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLP 187
Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 219
           V +K YW+ +   I +G++   +   G A  +D+GTSL+  P+ +   IN  IG +
Sbjct: 188 VRRKAYWEVKFEGIGLGDEYAELESHGAA--IDTGTSLITLPSGLAEMINAEIGAK 241

>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A Length = 329

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 325 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPL 384
           G+  +DC+    +P++ F      F + P  Y L+    ++  CIS     D P P GPL
Sbjct: 246 GQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLE----VSGSCISAITPMDFPEPVGPL 301
Query: 385 WILGDVFMGVYHTVFDSGKLRIGFAEA 411
            I+GD F+  Y++++D G   +G A+A
Sbjct: 302 AIVGDAFLRKYYSIYDIGNNAVGLAKA 328

>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329

Iteration: 1
 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 98/177 (55%), Gaps = 1/177 (0%)
Query: 43  SIRGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLG 102
           S  G++  + YGSGS++GFF                F  +  E    F+ A+FDGI+GL 
Sbjct: 65  STNGQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLA 124
Query: 103 FREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYV 162
           +  ++V +A      MV++G ++  VFS +L+       GG +VFGGVD   + G+  + 
Sbjct: 125 YPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQ-QGSSGGAVVFGGVDSSLYTGQIYWA 183
Query: 163 PVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 219
           PVT++ YWQ  + + LIG Q++G C  GC AIVD+GTSLL  P   ++ +  A G +
Sbjct: 184 PVTQELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQ 240

>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 366
           ++ +S + +   +  +  G+ +++C+ I  +P+++F I    F L P  YIL        
Sbjct: 227 QQYMSALLQATGAQEDEYGQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILSNNG---- 282
Query: 367 VCISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
            C  G     L    G PLWILGDVF+  Y++V+D G  R+GFA AA
Sbjct: 283 YCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329

>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine Pepsinogen Length = 370

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 106/194 (54%), Gaps = 14/194 (7%)
Query: 37  SLFPAISIRGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARF 95
           S F A S   +   I YG+GS++G                  F +  T  GS  +  A F
Sbjct: 106 STFEATS---QELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYY-APF 161
Query: 96  DGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 155
           DGI+GL +  I+   A PV+DN+ +QGLVS+++FS +L+ + D+  G  ++ GG+D  ++
Sbjct: 162 DGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS--GSVVLLGGIDSSYY 219
Query: 156 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHA 215
            G   +VPV+ +GYWQ  L  I +  + T  C GGC AIVD+GTSLL GPT  +  I   
Sbjct: 220 TGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSD 278
Query: 216 IG------GEGVVS 223
           IG      GE V+S
Sbjct: 279 IGASENSDGEMVIS 292

>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine Pepsinogen Length = 370

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 281 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 340
           G++  CS    A+V     L    T    ++ I     +  N  GE +I C  I ++P++
Sbjct: 245 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDI 302
Query: 341 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 400
            FTI    + LSP  YIL+  +     C SGF   D+P   G LWILGDVF+  Y+TVFD
Sbjct: 303 VFTIDGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 358
Query: 401 SGKLRIGFAEAA 412
               ++G A  A
Sbjct: 359 RANNKVGLAPVA 370

>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dimensional Structure Of The Hexagonal Crystal Form Of Porcine Pepsin At 2.3 Angstroms Resolution Length = 326

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 109/202 (53%), Gaps = 16/202 (7%)
Query: 37  SLFPAISIRGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARF 95
           S F A S   +   I YG+GS++G                  F +  T  GS  +  A F
Sbjct: 62  STFEATS---QELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYY-APF 117
Query: 96  DGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 155
           DGI+GL +  I+   A PV+DN+ +QGLVS+++FS +L+ + D+  G  ++ GG+D  ++
Sbjct: 118 DGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS--GSVVLLGGIDSSYY 175
Query: 156 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHA 215
            G   +VPV+ +GYWQ  L  I +  + T  C GGC AIVD+GTSLL GPT  +  I   
Sbjct: 176 TGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSD 234
Query: 216 IG------GEGVVSAECKLVVS 231
           IG      GE V+S  C  + S
Sbjct: 235 IGASENSDGEMVIS--CSSIAS 254

>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dimensional Structure Of The Hexagonal Crystal Form Of Porcine Pepsin At 2.3 Angstroms Resolution Length = 326

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 281 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 340
           G++  CS    A+V     L    T    ++ I     +  N  GE +I C  I ++P++
Sbjct: 201 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIASLPDI 258
Query: 341 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 400
            FTI    + LSP  YIL+  +     C SGF   D+P   G LWILGDVF+  Y+TVFD
Sbjct: 259 VFTINGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 401 SGKLRIGFAEAA 412
               ++G A  A
Sbjct: 315 RANNKVGLAPVA 326

>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex Reveals A Novel Crystal Packing Induced By Minor Chemical Alterations In The Inhibitor Length = 326

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 106/194 (54%), Gaps = 14/194 (7%)
Query: 37  SLFPAISIRGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARF 95
           S F A S   +   I YG+GS++G                  F +  T  GS  +  A F
Sbjct: 62  STFEATS---QELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYY-APF 117
Query: 96  DGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 155
           DGI+GL +  I+   A PV+DN+ +QGLVS+++FS +L+ + D+  G  ++ GG+D  ++
Sbjct: 118 DGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS--GSVVLLGGIDSSYY 175
Query: 156 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHA 215
            G   +VPV+ +GYWQ  L  I +  + T  C GGC AIVD+GTSLL GPT  +  I   
Sbjct: 176 TGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSD 234
Query: 216 IG------GEGVVS 223
           IG      GE V+S
Sbjct: 235 IGASENSDGEMVIS 248

>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex Reveals A Novel Crystal Packing Induced By Minor Chemical Alterations In The Inhibitor Length = 326

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 281 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 340
           G++  CS    A+V     L    T    ++ I     +  N  GE +I C  I ++P++
Sbjct: 201 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDI 258
Query: 341 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 400
            FTI    + LSP  YIL+  +     C SGF   D+P   G LWILGDVF+  Y+TVFD
Sbjct: 259 VFTINGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 401 SGKLRIGFAEAA 412
               ++G A  A
Sbjct: 315 RANNKVGLAPVA 326

>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin. Evidence For A Flexible Subdomain Length = 326

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 106/194 (54%), Gaps = 14/194 (7%)
Query: 37  SLFPAISIRGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARF 95
           S F A S   +   I YG+GS++G                  F +  T  GS  +  A F
Sbjct: 62  STFEATS---QELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYY-APF 117
Query: 96  DGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 155
           DGI+GL +  I+   A PV+DN+ +QGLVS+++FS +L+ + D+  G  ++ GG+D  ++
Sbjct: 118 DGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS--GSVVLLGGIDSSYY 175
Query: 156 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHA 215
            G   +VPV+ +GYWQ  L  I +  + T  C GGC AIVD+GTSLL GPT  +  I   
Sbjct: 176 TGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSD 234
Query: 216 IG------GEGVVS 223
           IG      GE V+S
Sbjct: 235 IGASENSDGEMVIS 248

>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin. Evidence For A Flexible Subdomain Length = 326

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 281 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 340
           G++  CS    A+V     L    T    ++ I     +  N  GE +I C  I ++P++
Sbjct: 201 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDI 258
Query: 341 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 400
            FTI    + LSP  YIL+  +     C SGF   D+P   G LWILGDVF+  Y+TVFD
Sbjct: 259 VFTIDGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 401 SGKLRIGFAEAA 412
               ++G A  A
Sbjct: 315 RANNKVGLAPVA 326

>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms Resolution Length = 370

Iteration: 1
 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 102/184 (55%), Gaps = 11/184 (5%)
Query: 47  KSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARFDGIIGLGFRE 105
           +   I YG+GS++G                  F +  T  GS  +  A FDGI+GL +  
Sbjct: 113 QELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYY-APFDGILGLAYPS 171
Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           I+   A PV+DN+ +QGLVS+++FS +L+ + D+  G  ++ GG+D  ++ G   +VPV+
Sbjct: 172 ISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS--GSVVLLGGIDSSYYTGSLNWVPVS 229
Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG------GE 219
            +GYWQ  L  I +  + T  C GGC AIVD+GTSLL GPT  +  I   IG      GE
Sbjct: 230 VEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGE 288
Query: 220 GVVS 223
            V+S
Sbjct: 289 MVIS 292

>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms Resolution Length = 370

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 281 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 340
           G++  CS    A+V     L    T    ++ I     +  N  GE +I C  I ++P++
Sbjct: 245 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDI 302
Query: 341 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 400
            FTI    + LSP  YIL+  +     C SGF   D+P   G LWILGDVF+  Y+TVFD
Sbjct: 303 VFTIDGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 358
Query: 401 SGKLRIGFAEAA 412
               ++G A  A
Sbjct: 359 RANNKVGLAPVA 370

>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To Porcine Pepsin Length = 326

Iteration: 1
 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 102/184 (55%), Gaps = 11/184 (5%)
Query: 47  KSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARFDGIIGLGFRE 105
           +   I YG+GS++G                  F +  T  GS  +  A FDGI+GL +  
Sbjct: 69  QELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYY-APFDGILGLAYPS 127
Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           I+   A PV+DN+ +QGLVS+++FS +L+ + D+  G  ++ GG+D  ++ G   +VPV+
Sbjct: 128 ISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS--GSVVLLGGIDSSYYTGSLNWVPVS 185
Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG------GE 219
            +GYWQ  L  I +  + T  C GGC AIVD+GTSLL GPT  +  I   IG      GE
Sbjct: 186 VEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGE 244
Query: 220 GVVS 223
            V+S
Sbjct: 245 MVIS 248

>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To Porcine Pepsin Length = 326

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 281 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 340
           G++  CS    A+V     L    T    ++ I     +  N  GE +I C  I ++P++
Sbjct: 201 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDI 258
Query: 341 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 400
            FTI    + LSP  YIL+  +     C SGF   D+P   G LWILGDVF+  Y+TVFD
Sbjct: 259 VFTINGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 401 SGKLRIGFAEAA 412
               ++G A  A
Sbjct: 315 RANNKVGLAPVA 326

>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine Pepsin Refined At 1.8 Angstroms Resolution Length = 326

Iteration: 1
 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 102/184 (55%), Gaps = 11/184 (5%)
Query: 47  KSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARFDGIIGLGFRE 105
           +   I YG+GS++G                  F +  T  GS  +  A FDGI+GL +  
Sbjct: 69  QELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYY-APFDGILGLAYPS 127
Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           I+   A PV+DN+ +QGLVS+++FS +L+ + D+  G  ++ GG+D  ++ G   +VPV+
Sbjct: 128 ISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS--GSVVLLGGIDSSYYTGSLNWVPVS 185
Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG------GE 219
            +GYWQ  L  I +  + T  C GGC AIVD+GTSLL GPT  +  I   IG      GE
Sbjct: 186 VEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGE 244
Query: 220 GVVS 223
            V+S
Sbjct: 245 MVIS 248

>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine Pepsin Refined At 1.8 Angstroms Resolution Length = 326

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 281 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 340
           G++  CS    A+V     L    T    ++ I     +  N  GE +I C  I ++P++
Sbjct: 201 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDI 258
Query: 341 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 400
            FTI    + LSP  YIL+  +     C SGF   D+P   G LWILGDVF+  Y+TVFD
Sbjct: 259 VFTIDGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 401 SGKLRIGFAEAA 412
               ++G A  A
Sbjct: 315 RANNKVGLAPVA 326

>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With Pepstatin Length = 326

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 102/190 (53%), Gaps = 9/190 (4%)
Query: 47  KSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARFDGIIGLGFRE 105
           ++  I YG+GS++G                  F +  T  GS  +  A FDGI+GL +  
Sbjct: 69  ETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYY-APFDGILGLAYPS 127
Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           I+   A PV+DN+  QGLVS+++FS +L+ D   + G  ++FGG+D  ++ G   +VPVT
Sbjct: 128 ISSSGATPVFDNIWNQGLVSQDLFSVYLSAD--DQSGSVVIFGGIDSSYYTGSLNWVPVT 185
Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG----EGV 221
            +GYWQ  +  I +  ++   C  GC AIVD+GTSLL GPT  +  I   IG     +G 
Sbjct: 186 VEGYWQITVDSITMNGEAI-ACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENSDGD 244
Query: 222 VSAECKLVVS 231
           +   C  + S
Sbjct: 245 MVVSCSAISS 254

>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With Pepstatin Length = 326

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 322 NPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR 381
           N  G+ ++ C  I ++P++ FTI    + + P  YIL++ EG    CISGF   +LP   
Sbjct: 240 NSDGDMVVSCSAISSLPDIVFTINGVQYPVPPSAYILQS-EG---SCISGFQGMNLPTES 295
Query: 382 GPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
           G LWILGDVF+  Y TVFD    ++G A  A
Sbjct: 296 GELWILGDVFIRQYFTVFDRANNQVGLAPVA 326

>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution Length = 326

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 102/190 (53%), Gaps = 9/190 (4%)
Query: 47  KSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARFDGIIGLGFRE 105
           ++  I YG+GS++G                  F +  T  GS  +  A FDGI+GL +  
Sbjct: 69  ETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYY-APFDGILGLAYPS 127
Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           I+   A PV+DN+  QGLVS+++FS +L+ D   + G  ++FGG+D  ++ G   +VPVT
Sbjct: 128 ISSSGATPVFDNIWNQGLVSQDLFSVYLSAD--DQSGSVVIFGGIDSSYYTGSLNWVPVT 185
Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG----EGV 221
            +GYWQ  +  I +  ++   C  GC AIVD+GTSLL GPT  +  I   IG     +G 
Sbjct: 186 VEGYWQITVDSITMNGEAI-ACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENSDGD 244
Query: 222 VSAECKLVVS 231
           +   C  + S
Sbjct: 245 MVVSCSAISS 254

>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution Length = 326

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 322 NPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR 381
           N  G+ ++ C  I ++P++ FTI    + + P  YIL++ EG    CISGF   ++P   
Sbjct: 240 NSDGDMVVSCSAISSLPDIVFTINGVQYPVPPSAYILQS-EG---SCISGFQGMNVPTES 295
Query: 382 GPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
           G LWILGDVF+  Y TVFD    ++G A  A
Sbjct: 296 GELWILGDVFIRQYFTVFDRANNQVGLAPVA 326

>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution Length = 320

Iteration: 1
 Score =  115 bits (287), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
Query: 46  GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFRE 105
           GK   I+YG+GS+ GF                    +T +    F  + FDGI+GL +  
Sbjct: 67  GKPLSIHYGTGSMEGFLGYDTVTVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPS 126
Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           +A   +VPV+DNM+++ LV+ ++FS +++R+    +G  +  G +DP ++ G   +VPVT
Sbjct: 127 LASEYSVPVFDNMMDRHLVARDLFSVYMDRN---GQGSMLTLGAIDPSYYTGSLHWVPVT 183
Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
            + YWQF +  + I N     C GGC AI+D+GTS+L GP+  + +I  AIG 
Sbjct: 184 LQQYWQFTVDSVTI-NGVAVACVGGCQAILDTGTSVLFGPSSDILKIQMAIGA 235

>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution Length = 320

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 322 NPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR 381
           N  GE  ++C  + +MP V F I  + + LSP  Y  K  +G    C SGF   +     
Sbjct: 238 NRYGEFDVNCGNLRSMPTVVFEINGRDYPLSPSAYTSKD-QGF---CTSGFQGDN----N 289
Query: 382 GPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
             LWILGDVF+  Y++VFD    R+G A+A
Sbjct: 290 SELWILGDVFIREYYSVFDRANNRVGLAKA 319

>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972 Length = 323

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 10/176 (5%)
Query: 46  GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFRE 105
           GK   I+YG+GS+ G                     +T+E    F  A FDGI+G+ +  
Sbjct: 70  GKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILGMAYPS 129
Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           +A   ++PV+DNM+ + LV++++FS +++R+    +   +  G +DP ++ G   +VPVT
Sbjct: 130 LASEYSIPVFDNMMNRHLVAQDLFSVYMDRN---GQESMLTLGAIDPSYYTGSLHWVPVT 186
Query: 166 KKGYWQFELGDILIGNQSTGV---CEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
            + YWQF +  + I    +GV   CEGGC AI+D+GTS L GP+  +  I  AIG 
Sbjct: 187 VQQYWQFTVDSVTI----SGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGA 238

>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972 Length = 323

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 313 INELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGF 372
           I +   +  N  GE  IDCD +  MP V F I  K++ L+P  Y  +  +G    C SGF
Sbjct: 232 IQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQ-DQGF---CTSGF 287
Query: 373 MAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
            + +        WILGDVF+  Y++VFD     +G A+A
Sbjct: 288 QSEN----HSQKWILGDVFIREYYSVFDRANNLVGLAKA 322

>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L. Length = 87

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Query: 326 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 385
           E  +DC+ + +MPNVSFTIG K F L+PEQYILK G+G A  CISGF A D     GPLW
Sbjct: 2   ELQVDCNTLSSMPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMD-ATLLGPLW 60
Query: 386 ILGDVFMGVYHTVFDSGKLRIGFAEAA 412
           ILGDVFM  YHTVFD G L +GFAEAA
Sbjct: 61  ILGDVFMRPYHTVFDYGNLLVGFAEAA 87

>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation, Kinetic Characterization And X-Ray Analysis At 2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf Chymosin Length = 323

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 10/176 (5%)
Query: 46  GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFRE 105
           GK   I+YG+GS+ G                     +T+E    F  A FDGI+G+ +  
Sbjct: 70  GKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPS 129
Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           +A   ++PV+DNM+ + LV++++FS +++R+    +   +  G +DP ++ G   +VPVT
Sbjct: 130 LASEYSIPVFDNMMNRHLVAQDLFSVYMDRN---GQESMLTLGAIDPSYYTGSLHWVPVT 186
Query: 166 KKGYWQFELGDILIGNQSTGV---CEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
            + YWQF +  + I    +GV   CEGGC AI+D+GTS L GP+  +  I  AIG 
Sbjct: 187 VQQYWQFTVDSVTI----SGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGA 238

>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation, Kinetic Characterization And X-Ray Analysis At 2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf Chymosin Length = 323

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 313 INELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGF 372
           I +   +  N  GE  IDCD +  MP V F I  K++ L+P  Y  +  +G    C SGF
Sbjct: 232 IQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQ-DQGF---CTSGF 287
Query: 373 MAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
            + +        WILGDVF+  Y++VFD     +G A+A
Sbjct: 288 QSEN----HSQKWILGDVFIREYYSVFDRANNLVGLAKA 322

>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of A Pepsin From Atlantic Cod (Gadus Morhua) Length = 324

Iteration: 1
 Score =  112 bits (279), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 95/189 (50%), Gaps = 7/189 (3%)
Query: 46  GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFRE 105
           GK+ ++ YG+G + G   Q                E+  E       A FDGI+GL +  
Sbjct: 68  GKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAYPS 127
Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           IA   AVPV+DNM  Q LV +++FSF+L+       G E++ GGVD  H+ G   ++PVT
Sbjct: 128 IAAAGAVPVFDNMGSQSLVEKDLFSFYLSG--GGANGSEVMLGGVDNSHYTGSIHWIPVT 185
Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG---EGVV 222
            + YWQ  L  I +  Q T  CE GC AIVD+GTS +  P   +  I   IG    +G +
Sbjct: 186 AEKYWQVALDGITVNGQ-TAACE-GCQAIVDTGTSKIVAPVSALANIMKDIGASENQGEM 243
Query: 223 SAECKLVVS 231
              C  V S
Sbjct: 244 MGNCASVQS 252

>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of A Pepsin From Atlantic Cod (Gadus Morhua) Length = 324

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 18/137 (13%)
Query: 281 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPN-----PMGESIIDCDRIP 335
           G +A C  C+  V              K+++ ++ L + + +       GE + +C  + 
Sbjct: 201 GQTAACEGCQAIV---------DTGTSKIVAPVSALANIMKDIGASENQGEMMGNCASVQ 251
Query: 336 TMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY 395
           ++P+++FTI      L P  YI    EG    C SG  +  +P     LWI GDVF+  Y
Sbjct: 252 SLPDITFTINGVKQPLPPSAYI----EGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNY 307
Query: 396 HTVFDSGKLRIGFAEAA 412
           +T++D    ++GFA AA
Sbjct: 308 YTIYDRTNNKVGFAPAA 324

>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium Falciparum Length = 336

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 10/169 (5%)
Query: 46  GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL--TFLLARFDGIIGLGF 103
           G   E+NY SG++SGFFS+              FIE T        + L +FDGI+GLG+
Sbjct: 77  GTKVEMNYVSGTVSGFFSKDIVTIANLSFPYK-FIEVTDTNGFEPAYTLGQFDGIVGLGW 135
Query: 104 REIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
           +++++G   PV   +  Q  + + VF+F+L  D   +  G +  GG++ + ++G+ TY  
Sbjct: 136 KDLSIGSVDPVVVELKNQNKIEQAVFTFYLPFDD--KHKGYLTIGGIEDRFYEGQLTYEK 193
Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212
           +    YWQ +L D+  GN +         AIVDSGTS +  PT  + + 
Sbjct: 194 LNHDLYWQVDL-DLHFGNLTV----EKATAIVDSGTSSITAPTEFLNKF 237

>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium Falciparum Length = 336

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 328 IIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWIL 387
           I  C+  P +P + F     ++ L PE Y+ +  +    +C+   +  DL       +IL
Sbjct: 253 ITTCNN-PKLPTLEFRSATNVYTLEPEYYLQQIFDFGISLCMVSIIPVDL---NKNTFIL 308
Query: 388 GDVFMGVYHTVFDSGKLRIGFAEA 411
           GD FM  Y TVFD     +GFA A
Sbjct: 309 GDPFMRKYFTVFDYDNHTVGFALA 332

>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease Plasmepsin 4 From The Malarial Parasite Plasmodium Malariae Bound To An Allophenylnorstatine Based Inhibitor Length = 327

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 10/169 (5%)
Query: 46  GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLT--FLLARFDGIIGLGF 103
           G   EI YGSG++ GFFS+              FIE T    L   +  A FDGI+GLG+
Sbjct: 70  GTKVEITYGSGTVRGFFSKDLVTLGYLSLPYK-FIEVTDTDDLEPLYTAAEFDGILGLGW 128
Query: 104 REIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
           +++++G   P+   +  Q  + + +F+F+L      +  G +  GG++ K ++G+ TY  
Sbjct: 129 KDLSIGSIDPIVVELKNQNKIDQALFTFYLPV--HDKHSGYLTIGGIEEKFYEGELTYEK 186
Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212
           +    +WQ +L D+  G  S          IVDSGTS +  PT  + + 
Sbjct: 187 LNHDLFWQVDL-DVNFGKTSM----EKANVIVDSGTSTITAPTSFINKF 230

>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease Plasmepsin 4 From The Malarial Parasite Plasmodium Malariae Bound To An Allophenylnorstatine Based Inhibitor Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 337 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 396
           MP + F   +  + L PE Y+    +    +C+   +  D+       +ILGD FM  Y 
Sbjct: 254 MPTLEFKSANNTYTLEPEYYMEPLLDIDDTLCMLYILPVDIDKNT---FILGDPFMRKYF 310
Query: 397 TVFDSGKLRIGFAEA 411
           TVFD  K  IGFA A
Sbjct: 311 TVFDYDKESIGFAVA 325

>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin Inhibitors Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 45  RGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFR 104
            G    + Y +G++SGF SQ              F E T   +L F+LA FDG++G+GF 
Sbjct: 75  NGTELTLRYSTGTVSGFLSQDIITVGGITVTQM-FGEVTEMPALPFMLAEFDGVVGMGFI 133
Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 136
           E A+G   P++DN++ QG++ E+VFSF+ NRD
Sbjct: 134 EQAIGRVTPIFDNIISQGVLKEDVFSFYYNRD 165

>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial Pathogen Plasmodium Vivax Length = 375

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 12/170 (7%)
Query: 46  GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLT--FLLARFDGIIGLGF 103
           G   +I YGSG++ GFFS+              FIE T    L   +    FDGI+GLG+
Sbjct: 118 GTKVDITYGSGTVKGFFSKDLVTLGHLSMPYK-FIEVTDTDDLEPIYSSVEFDGILGLGW 176
Query: 104 REIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAE-EGGEIVFGGVDPKHFKGKHTYV 162
           +++++G   P+   +  Q  +   +F+F+L   P  +   G +  GG++ K ++G  TY 
Sbjct: 177 KDLSIGSIDPIVVELKNQNKIDNALFTFYL---PVHDVHAGYLTIGGIEEKFYEGNITYE 233
Query: 163 PVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212
            +    YWQ +L D+  G Q+          IVDSGT+ +  P+  + + 
Sbjct: 234 KLNHDLYWQIDL-DVHFGKQTM----EKANVIVDSGTTTITAPSEFLNKF 278

>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial Pathogen Plasmodium Vivax Length = 375

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 328 IIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWIL 387
           +  CD    MP + F   +  + L PE Y+    E    +C+   +  D+       +IL
Sbjct: 294 VTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDI---DSNTFIL 349
Query: 388 GDVFMGVYHTVFDSGKLRIGFAEAA 412
           GD FM  Y TVFD  K  +GFA A 
Sbjct: 350 GDPFMRKYFTVFDYDKESVGFAIAK 374

>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium Falciparum Length = 329

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 10/169 (5%)
Query: 46  GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL--TFLLARFDGIIGLGF 103
           G   E+NY SG++SGFFS+              FIE         T+  + FDGI+GLG+
Sbjct: 70  GTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILGLGW 128
Query: 104 REIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
           +++++G   P+   +  Q  +   +F+F+L      +  G +  GG++ + ++G  TY  
Sbjct: 129 KDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIGGIEERFYEGPLTYEK 186
Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212
           +    YWQ  L D  +GN S  + +  C  IVDSGTS +  PT  + ++
Sbjct: 187 LNHDLYWQITL-DAHVGNIS--LEKANC--IVDSGTSAITVPTDFLNKM 230

>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium Falciparum Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 337 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 396
           +P   FT  +  + L PE Y+    +    +C+   +  D P P    +ILGD FM  Y 
Sbjct: 254 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 310
Query: 397 TVFDSGKLRIGFAEA 411
           TVFD     +G A A
Sbjct: 311 TVFDYDNHSVGIALA 325

>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To 2.4 A Length = 331

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 10/169 (5%)
Query: 46  GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL--TFLLARFDGIIGLGF 103
           G   E+NY SG++SGFFS+              FIE         T+  + FDGI+GLG+
Sbjct: 72  GTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILGLGW 130
Query: 104 REIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
           +++++G   P+   +  Q  +   +F+F+L      +  G +  GG++ + ++G  TY  
Sbjct: 131 KDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIGGIEERFYEGPLTYEK 188
Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212
           +    YWQ  L D  +GN S  + +  C  IVDSGTS +  PT  + ++
Sbjct: 189 LNHDLYWQITL-DAHVGNIS--LEKANC--IVDSGTSAITVPTDFLNKM 232

>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To 2.4 A Length = 331

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 337 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 396
           +P   FT  +  + L PE Y+    +    +C+   +  D P P    +ILGD FM  Y 
Sbjct: 256 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 312
Query: 397 TVFDSGKLRIGFAEA 411
           TVFD     +G A A
Sbjct: 313 TVFDYDNHSVGIALA 327

>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral Inhibitor Length = 453

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 10/169 (5%)
Query: 46  GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL--TFLLARFDGIIGLGF 103
           G   E+NY SG++SGFFS+              FIE         T+  + FDGI+GLG+
Sbjct: 194 GTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILGLGW 252
Query: 104 REIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
           +++++G   P+   +  Q  +   +F+F+L      +  G +  GG++ + ++G  TY  
Sbjct: 253 KDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGIEERFYEGPLTYEK 310
Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212
           +    YWQ  L D  +GN    +       IVDSGTS +  PT  + ++
Sbjct: 311 LNHDLYWQITL-DAHVGN----IMLEKANCIVDSGTSAITVPTDFLNKM 354

>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral Inhibitor Length = 453

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 337 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 396
           +P   FT  +  + L PE Y+    +    +C+   +  D P P    +ILGD FM  Y 
Sbjct: 378 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 434
Query: 397 TVFDSGKLRIGFAEAA 412
           TVFD     +G A A 
Sbjct: 435 TVFDYDNHSVGIALAK 450

>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum Length = 380

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 10/169 (5%)
Query: 46  GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL--TFLLARFDGIIGLGF 103
           G   E+NY SG++SGFFS+              FIE         T+  + FDGI+GLG+
Sbjct: 121 GTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILGLGW 179
Query: 104 REIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
           +++++G   P+   +  Q  +   +F+F+L      +  G +  GG++ + ++G  TY  
Sbjct: 180 KDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGIEERFYEGPLTYEK 237
Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212
           +    YWQ  L D  +GN    +       IVDSGTS +  PT  + ++
Sbjct: 238 LNHDLYWQITL-DAHVGN----IMLEKANCIVDSGTSAITVPTDFLNKM 281

>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum Length = 380

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 337 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 396
           +P   FT  +  + L PE Y+    +    +C+   +  D P P    +ILGD FM  Y 
Sbjct: 305 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 361
Query: 397 TVFDSGKLRIGFAEA 411
           TVFD     +G A A
Sbjct: 362 TVFDYDNHSVGIALA 376

>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From Plasmodium Falciparum, In Complex With Pepstatin A Length = 329

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 10/169 (5%)
Query: 46  GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL--TFLLARFDGIIGLGF 103
           G   E+NY SG++SGFFS+              FIE         T+  + FDGI+GLG+
Sbjct: 70  GTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILGLGW 128
Query: 104 REIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
           +++++G   P+   +  Q  +   +F+F+L      +  G +  GG++ + ++G  TY  
Sbjct: 129 KDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIGGIEERFYEGPLTYEK 186
Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212
           +    YWQ  L D  +GN    +       IVDSGTS +  PT  + ++
Sbjct: 187 LNHDLYWQITL-DAHVGN----IMLEKANCIVDSGTSAITVPTDFLNKM 230

>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From Plasmodium Falciparum, In Complex With Pepstatin A Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 337 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 396
           +P   FT  +  + L PE Y+    +    +C+   +  D P P    +ILGD FM  Y 
Sbjct: 254 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 310
Query: 397 TVFDSGKLRIGFAEA 411
           TVFD     +G A A
Sbjct: 311 TVFDYDNHSVGIALA 325

>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In Complex With Pepstatin A Length = 328

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 13/185 (7%)
Query: 31  HLQSAISLFPAISIRGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTF 90
           HL  A S   +    G   EI+YGSG++ G+FS+              FIE T    L  
Sbjct: 56  HLYDA-SASKSYEKDGTKVEISYGSGTVRGYFSKDVISLGDLSLPYK-FIEVTDADDLEP 113
Query: 91  LLA--RFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEG-GEIVF 147
           + +   FDGI+GLG++++++G   PV   + +Q  +   +F+F+L   P  ++  G +  
Sbjct: 114 IYSGSEFDGILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYL---PVHDKHVGYLTI 170
Query: 148 GGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTP 207
           GG++   ++G  TY  +    YWQ +L DI  G            A+VDSGTS +  PT 
Sbjct: 171 GGIESDFYEGPLTYEKLNHDLYWQIDL-DIHFGK----YVMQKANAVVDSGTSTITAPTS 225
Query: 208 VVTEI 212
            + + 
Sbjct: 226 FLNKF 230

>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In Complex With Inhibitor Eh58 Length = 331

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 10/169 (5%)
Query: 46  GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL--TFLLARFDGIIGLGF 103
           G   E+NY SG++SGFFS+              FIE         T+  + FDGI+GLG+
Sbjct: 72  GTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILGLGW 130
Query: 104 REIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
           +++++G   P+   +  Q  +   +F+F+L      +  G +  GG++ + ++G  TY  
Sbjct: 131 KDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIGGIEERFYEGPLTYEK 188
Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212
           +    YWQ  L D  +GN    +       IVDSGTS +  PT  + ++
Sbjct: 189 LNHDLYWQITL-DAHVGN----IMLEKANCIVDSGTSAITVPTDFLNKM 232

>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In Complex With Inhibitor Eh58 Length = 331

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 337 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 396
           +P   FT  +  + L PE Y+    +    +C+   +  D P P    +ILGD FM  Y 
Sbjct: 256 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 312
Query: 397 TVFDSGKLRIGFAEA 411
           TVFD     +G A A
Sbjct: 313 TVFDYDNHSVGIALA 327

>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin Inhibitors Length = 176

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 311 SYINELCDSL--PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 368
           S I +L ++L     + + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C
Sbjct: 67  SSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLC 126
Query: 369 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
                A D+PPP GP W LG  F+  ++T FD    RIGFA A
Sbjct: 127 TLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA 169

>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2 Length = 330

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 65/123 (52%), Gaps = 13/123 (10%)
Query: 105 EIAVGDAVP----------VWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKH 154
           ++ VG A P          V +N VE+ L++  VFS    R  D E  GEI+FGG D K+
Sbjct: 121 DVVVGIAAPGCPNALKGKTVLENFVEENLIAP-VFSIHHARFQDGEHFGEIIFGGSDWKY 179
Query: 155 FKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINH 214
             G+ TYVP+     W+F L  + IG+  T V   G  AI+D+  +++ GP   V  IN 
Sbjct: 180 VDGEFTYVPLVGDDSWKFRLDGVKIGD--TTVAPAGTQAIIDTSKAIIVGPKAYVNPINE 237
Query: 215 AIG 217
           AIG
Sbjct: 238 AIG 240

>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2 Length = 330

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 22/104 (21%)
Query: 322 NPMGESI--------------IDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEV 367
           NP+ E+I              +DC +IP++P+V+F I  + FN+S + YI + G     +
Sbjct: 233 NPINEAIGCVVEKTTTRRICKLDCSKIPSLPDVTFVINGRNFNISSQYYIQQNG----NL 288
Query: 368 CISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
           C SGF     P      + +GD F+  Y++ F+     +GF  +
Sbjct: 289 CYSGFQ----PXGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRS 328

>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3 Length = 334

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 114 VWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFE 173
           V +N VE+ L++  VFS    R  D E  GEI+FGG D K+  G+ TYVP+     W+F 
Sbjct: 142 VLENFVEENLIAP-VFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFR 200
Query: 174 LGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 217
           L  + IG+  T V   G  AI+D+  +++ GP   V  IN AIG
Sbjct: 201 LDGVKIGD--TTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIG 242

>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3 Length = 334

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 22/104 (21%)
Query: 322 NPMGESI--------------IDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEV 367
           NP+ E+I              +DC +IP++P+V+F I  + FN+S + YI + G     +
Sbjct: 235 NPINEAIGCVVEKTTTRRICKLDCSKIPSLPDVTFVINGRNFNISSQYYIQQNG----NL 290
Query: 368 CISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
           C SGF     P      + +GD F+  Y++ F+     +GF  +
Sbjct: 291 CYSGFQ----PCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRS 330

>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 14/189 (7%)
Query: 46  GKSCEINYGSGS-ISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFR 104
           G++  I+YG GS  SG  ++                 A RE + +F     DG++GLGF 
Sbjct: 70  GRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAA-SFASGPNDGLLGLGFD 128
Query: 105 EIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYV 162
            I    G   P+ DN++ QGL+S  +F  +L +  +    GE +FGG D   FKG  T V
Sbjct: 129 TITTVRGVKTPM-DNLISQGLISRPIFGVYLGKAKNGGG-GEYIFGGYDSTKFKGSLTTV 186
Query: 163 PV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG---- 217
           P+   +G+W   +    +G  +      G   I+D+GT+LL  P  +   +  A G    
Sbjct: 187 PIDNSRGWWGITVDRATVGTSTVASSFDG---ILDTGTTLLILPNNIAASVARAYGASDN 243
Query: 218 GEGVVSAEC 226
           G+G  +  C
Sbjct: 244 GDGTYTISC 252

>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 14/189 (7%)
Query: 46  GKSCEINYGSGS-ISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFR 104
           G++  I+YG GS  SG  ++                 A RE + +F     DG++GLGF 
Sbjct: 70  GRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAA-SFASGPNDGLLGLGFD 128
Query: 105 EIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYV 162
            I    G   P+ DN++ QGL+S  +F  +L +  +    GE +FGG D   FKG  T V
Sbjct: 129 TITTVRGVKTPM-DNLISQGLISRPIFGVYLGKAKNGGG-GEYIFGGYDSTKFKGSLTTV 186
Query: 163 PV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG---- 217
           P+   +G+W   +    +G  +      G   I+D+GT+LL  P  +   +  A G    
Sbjct: 187 PIDNSRGWWGITVDRATVGTSTVASSFDG---ILDTGTTLLILPNNIAASVARAYGASDN 243
Query: 218 GEGVVSAEC 226
           G+G  +  C
Sbjct: 244 GDGTYTISC 252

>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 98/237 (41%), Gaps = 20/237 (8%)
Query: 5   LERLVLALPHKISV-------SYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGS 57
           LE L+   P K+ +       ++ +   P S                +G    + Y  GS
Sbjct: 17  LEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYIDTYFDTERSSTYRSKGFDVTVKYTQGS 76
Query: 58  ISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLA--RFDGIIGLGFREIAVGDAV--P 113
            +GF  +                 AT   S  F L   +++GI+GL +  +A   +    
Sbjct: 77  WTGFVGEDLVTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLET 136
Query: 114 VWDNMVEQGLVSEEVFSFW-----LNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKG 168
            +D++V Q  +   VFS       L        GG +V GG++P  +KG   Y P+ ++ 
Sbjct: 137 FFDSLVTQANI-PNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKEEW 195
Query: 169 YWQFELGDILIGNQSTGV-CEGGCA--AIVDSGTSLLAGPTPVVTEINHAIGGEGVV 222
           Y+Q E+  + IG QS  + C    A  AIVDSGT+LL  P  V   +  A+    ++
Sbjct: 196 YYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLI 252

>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From Plasmodium Falciparum Length = 332

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 31/200 (15%)
Query: 30  FHLQSAISLFPAISIRGKSCE---------------------INYGSGSISGFFSQXXXX 68
           FH  S+    P+I    +SCE                     +   +G+ISG FS+    
Sbjct: 37  FHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDDTPVKLTSKAGTISGIFSKDLVT 96
Query: 69  XXXXXXXXXXFIEATREGSLT--FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE 126
                     FIE T        +  +  DG+ GLG++++++G   P    +  Q  + +
Sbjct: 97  IGKLSVPYK-FIEMTEIVGFEPFYSESDVDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQ 155
Query: 127 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV 186
            V+S +L   P+ +  G +  GG++ + F G   Y  +     WQ +L D+  GN    V
Sbjct: 156 AVYSIYL--PPENKNKGYLTIGGIEERFFDGPLNYEKLNHDLMWQVDL-DVHFGN----V 208
Query: 187 CEGGCAAIVDSGTSLLAGPT 206
                  I+DS TS++  PT
Sbjct: 209 SSKKANVILDSATSVITVPT 228

>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From Plasmodium Falciparum Length = 332

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 337 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 396
           +P + +   +K++ L P+QY+       + +C+   +  DL       ++LGD FM  Y 
Sbjct: 258 LPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDL---EKNTFVLGDPFMRKYF 314
Query: 397 TVFDSGKLRIGFAEA 411
           TV+D     +GFA A
Sbjct: 315 TVYDYDNHTVGFALA 329

>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen From Plasmodium Falciparum Length = 451

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 31/206 (15%)
Query: 30  FHLQSAISLFPAISIRGKSCE---------------------INYGSGSISGFFSQXXXX 68
           FH  S+    P+I    +SCE                     +   +G+ISG FS+    
Sbjct: 156 FHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDDTPVKLTSKAGTISGIFSKDLVT 215
Query: 69  XXXXXXXXXXFIEATREGSLT--FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE 126
                     FIE T        +  +  DG+ GLG++++++G   P    +  Q  + +
Sbjct: 216 IGKLSVPYK-FIEMTEIVGFEPFYSESDVDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQ 274
Query: 127 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV 186
            V+S +L   P+ +  G +  GG++ + F G   Y  +     WQ +L D+  GN    V
Sbjct: 275 AVYSIYL--PPENKNKGYLTIGGIEERFFDGPLNYEKLNHDLMWQVDL-DVHFGN----V 327
Query: 187 CEGGCAAIVDSGTSLLAGPTPVVTEI 212
                  I+DS TS++  PT    + 
Sbjct: 328 SSKKANVILDSATSVITVPTEFFNQF 353

>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen From Plasmodium Falciparum Length = 451

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 337 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 396
           +P + +   +K++ L P+QY+       + +C+   +  DL       ++LGD FM  Y 
Sbjct: 377 LPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDL---EKNTFVLGDPFMRKYF 433
Query: 397 TVFDSGKLRIGFAEAA 412
           TV+D     +GFA A 
Sbjct: 434 TVYDYDNHTVGFALAK 449

>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans Complexed With A70450 Length = 342

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 97  GIIGLGFREIAVG---DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK 153
           GI+G+G++    G   D VPV   + +QG++++  +S +LN  PDA  G +I+FGGVD  
Sbjct: 122 GILGVGYKTNEAGGSYDNVPVT--LKKQGVIAKNAYSLYLNS-PDAATG-QIIFGGVDNA 177
Query: 154 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 213
            + G    +PVT     +  LG + +  ++  +       ++DSGT++      +  +I 
Sbjct: 178 KYSGSLIALPVTSDRELRISLGSVEVSGKT--INTDNVDVLLDSGTTITYLQQDLADQII 235
Query: 214 HAIGGE 219
            A  G+
Sbjct: 236 KAFNGK 241

>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans Length = 342

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 97  GIIGLGFREIAVG---DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK 153
           GI+G+G++    G   D VPV   + +QG++++  +S +LN  PD+  G +I+FGGVD  
Sbjct: 122 GILGVGYKTNEAGGSYDNVPVT--LKKQGVIAKNAYSLYLNS-PDSATG-QIIFGGVDNA 177
Query: 154 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 213
            + G    +PVT     +  LG + +  ++  +       ++DSGT++      +  +I 
Sbjct: 178 KYSGSLIALPVTSDRELRISLGSVEVSGKT--INTDNVDVLLDSGTTITYLQQDLADQII 235
Query: 214 HAIGGE 219
            A  G+
Sbjct: 236 KAFNGK 241

>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans Length = 340

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 10/135 (7%)
Query: 97  GIIGLGFR-EIAVG--DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK 153
           GI+G+G++   A G  D VPV   +  QG++S+  +S +LN        G+I+FGGVD  
Sbjct: 121 GILGIGYKTHEAEGNYDNVPV--TLKNQGIISKNAYSLYLNSRQ--ATSGQIIFGGVDNA 176
Query: 154 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 213
            + G    +PVT     +  L  + +  QS          ++DSGT++      V  ++ 
Sbjct: 177 KYSGTLIALPVTSDNELRIHLNTVKVAGQS---INADVDVLLDSGTTITYLQQGVADQVI 233
Query: 214 HAIGGEGVVSAECKL 228
            A  G+    A   L
Sbjct: 234 SAFNGQETYDANGNL 248

>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From Candida Tropicalis Yeast Length = 334

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 97  GIIGLGFREIAVG----DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDP 152
           GI+G+GF     G    D VPV   + +QG++++  +S +LN + DA  G +I+FGGVD 
Sbjct: 122 GIMGIGFTADEAGYNLYDNVPV--TLKKQGIINKNAYSLYLNSE-DASTG-KIIFGGVDN 177
Query: 153 KHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSL 201
             + G  T +PVT     +  LG I     S          ++DSGT++
Sbjct: 178 AKYTGTLTALPVTSSVELRVHLGSINFDGTSVST---NADVVLDSGTTI 223

>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans Length = 341

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 8/125 (6%)
Query: 97  GIIGLGFR-EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 155
           GI+G+G++   A GD   V   +  QG++++  +S +LN  P+A  G +I+FGGVD   +
Sbjct: 122 GILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNS-PNAATG-QIIFGGVDKAKY 179
Query: 156 KGKHTYVPVTKKGYWQFELGDI-LIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINH 214
            G    VPVT     +  L  +  +G        G    ++DSGT++      V  +I  
Sbjct: 180 SGSLIAVPVTSDRELRITLNSLKAVGKN----INGNIDVLLDSGTTITYLQQDVAQDIID 235
Query: 215 AIGGE 219
           A   E
Sbjct: 236 AFQAE 240

>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex Lacteus Length = 340

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 21/157 (13%)
Query: 96  DGIIGLGFREIAVGDAVP--------VWDNMVEQGLVSEEVFSFWLNRDPDAEE---GGE 144
           DGI+G+G  ++ VG   P        V DN+  QG +   + +  ++ +P   E    GE
Sbjct: 102 DGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLA--VSFEPTTSESSTNGE 159
Query: 145 IVFGGVDPKHFKGKHTYVPVTK----KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTS 200
           + FG  D   + G  TY P+T       YW      I  G+ ++ +     A IVD+GT+
Sbjct: 160 LTFGATDSSKYTGSITYTPITSTSPASAYWGINQ-SIRYGSSTSILSS--TAGIVDTGTT 216
Query: 201 LLAGPTPVVTEINHAIGG-EGVVSAECKLVVSQYGDL 236
           L    +    +   A G      +   +L  +QY +L
Sbjct: 217 LTLIASDAFAKYKKATGAVADNNTGLLRLTTAQYANL 253

>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans Length = 342

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 23/145 (15%)
Query: 97  GIIGLGFREIAVGDAVPV-WDNM----VEQGLVSEEVFSFWLNRDPDAEEG-GEIVFGGV 150
           GI+G+GF+    G+A    +DN+      QG++ +  +S +LN    AE   G+I+FGG+
Sbjct: 122 GILGIGFQS---GEATEFDYDNLPISLRNQGIIGKAAYSLYLNS---AEASTGQIIFGGI 175
Query: 151 DPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVT 210
           D   + G    +P+T +      L  + +  ++    +     ++DSGT++      +V 
Sbjct: 176 DKAKYSGSLVDLPITSEKKLTVGLRSVNVRGRN---VDANTNVLLDSGTTISYFTRSIVR 232
Query: 211 EINHAIG--------GEGVVSAECK 227
            I +AIG        G  V  A+CK
Sbjct: 233 NILYAIGAQMKFDSAGNKVYVADCK 257

>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In Complex With Pepstatin A Length = 339

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 97  GIIGLGFREI-AVGDA-----VPVWDN----MVEQGLVSEEVFSFWLNRDPDAEEGGEIV 146
           GI+G+G+    AV D       P +DN    + +QG +    +S +LN  P AE G  I+
Sbjct: 116 GILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNS-PSAETG-TII 173
Query: 147 FGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 206
           FGGVD   + GK     VT        L  + +   S    +G   A++DSGT+L   P+
Sbjct: 174 FGGVDNAKYSGKLVAEQVTSSQALTISLASVNLKGSSFSFGDG---ALLDSGTTLTYFPS 230
Query: 207 PVVTEINHAIGGE 219
               ++    G  
Sbjct: 231 DFAAQLADKAGAR 243

>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1 Length = 409

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 187
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 188 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 247
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 248 TNLRLPKKVFE--------AAVASIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 293
Query: 260 N 260
           N
Sbjct: 294 N 294

>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596 Length = 390

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 175
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 176 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 235
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 236 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 281
Query: 260 N 260
           N
Sbjct: 282 N 282

>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An Amino- Ethylene Inhibitor Length = 388

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 116 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 174
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 175 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 234
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 235 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 280
Query: 260 N 260
           N
Sbjct: 281 N 281

>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor Length = 391

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 119 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 177
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 178 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 237
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 238 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 283
Query: 260 N 260
           N
Sbjct: 284 N 284

>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea) Bace-1 Inhibitors Length = 386

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 114 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 172
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 173 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 232
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 233 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 278
Query: 260 N 260
           N
Sbjct: 279 N 279

>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With 2-Amino-3-Methyl-6- ((1s, 2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One Length = 416

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 136 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 194
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 195 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 254
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 255 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 300
Query: 260 N 260
           N
Sbjct: 301 N 301

>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor Length = 391

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 119 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 177
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 178 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 237
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 238 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 283
Query: 260 N 260
           N
Sbjct: 284 N 284

>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase) Length = 411

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 132 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 190
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 191 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 250
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 251 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 296
Query: 260 N 260
           N
Sbjct: 297 N 297

>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)- Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)- Acetamide Length = 405

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 260 N 260
           N
Sbjct: 298 N 298

>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h- Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide Length = 412

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 175
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 176 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 235
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 236 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 281
Query: 260 N 260
           N
Sbjct: 282 N 282

>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide Length = 405

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 260 N 260
           N
Sbjct: 298 N 298

>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor Length = 412

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 132 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 190
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 191 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 250
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 251 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 296
Query: 260 N 260
           N
Sbjct: 297 N 297

>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor (2) Length = 406

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 119 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 177
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 178 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 237
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 238 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 283
Query: 260 N 260
           N
Sbjct: 284 N 284

>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor Length = 413

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 260 N 260
           N
Sbjct: 298 N 298

>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572 Length = 395

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 122 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 180
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 181 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 240
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 241 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 286
Query: 260 N 260
           N
Sbjct: 287 N 287

>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph 5.0 Length = 411

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 131 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 189
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 190 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 249
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 250 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 295
Query: 260 N 260
           N
Sbjct: 296 N 296

>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1 Length = 404

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 175
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 176 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 235
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 236 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 281
Query: 260 N 260
           N
Sbjct: 282 N 282

>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An Exosite- Binding Antibody Length = 402

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 120 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 178
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 179 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 238
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 239 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 284
Query: 260 N 260
           N
Sbjct: 285 N 285

>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Inhibitor Length = 405

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 260 N 260
           N
Sbjct: 298 N 298

>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As Beta Secretase (Bace) Inhibitors Length = 390

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 118 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 176
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 177 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 236
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 237 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 282
Query: 260 N 260
           N
Sbjct: 283 N 283

>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic Domain. Length = 389

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 175
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 176 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 235
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 236 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 281
Query: 260 N 260
           N
Sbjct: 282 N 282

>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432 Length = 414

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 134 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 192
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 193 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 252
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 253 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 298
Query: 260 N 260
           N
Sbjct: 299 N 299

>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid(3-Mercapto-Propyl)-Amide Length = 405

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 260 N 260
           N
Sbjct: 298 N 298

>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(2, 6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto- Butyramide Length = 405

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 260 N 260
           N
Sbjct: 298 N 298

>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor Length = 406

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 134 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 192
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 193 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 252
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 253 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 298
Query: 260 N 260
           N
Sbjct: 299 N 299

>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor Length = 405

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 260 N 260
           N
Sbjct: 298 N 298

>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485 Length = 395

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 122 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 180
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 181 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 240
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 241 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 286
Query: 260 N 260
           N
Sbjct: 287 N 287

>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 388

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 175
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 176 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 235
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 236 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 281
Query: 260 N 260
           N
Sbjct: 282 N 282

>pdb|3TPJ|A Chain A, Apo Structure Of Bace1 Length = 433

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 153 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 211
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 212 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 271
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 272 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 317
Query: 260 N 260
           N
Sbjct: 318 N 318

>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0 Length = 411

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 132 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 190
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 191 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 250
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 251 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 296
Query: 260 N 260
           N
Sbjct: 297 N 297

>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Ixs Length = 411

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 139 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 197
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 198 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 257
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 258 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 303
Query: 260 N 260
           N
Sbjct: 304 N 304

>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Aur200 Length = 402

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 187
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 188 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 247
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 248 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 293
Query: 260 N 260
           N
Sbjct: 294 N 294

>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Amk640 Length = 408

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 187
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 188 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 247
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 248 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 293
Query: 260 N 260
           N
Sbjct: 294 N 294

>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1 Inhibitors: Prime Side Chromane-Containing Inhibitors Length = 408

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 187
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 188 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 247
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 248 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 293
Query: 260 N 260
           N
Sbjct: 294 N 294

>pdb|2QU2|A Chain A, Bace1 With Compound 1 Length = 415

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 187
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 188 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 247
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 248 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 293
Query: 260 N 260
           N
Sbjct: 294 N 294

>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 5 Length = 402

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 130 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 188
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 189 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 248
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 249 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 294
Query: 260 N 260
           N
Sbjct: 295 N 295

>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor Length = 433

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 153 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 211
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 212 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 271
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 272 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 317
Query: 260 N 260
           N
Sbjct: 318 N 318

>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 8c Length = 455

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 176 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 234
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 235 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 294
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 295 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 340
Query: 260 N 260
           N
Sbjct: 341 N 341

>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132 Length = 455

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 175 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 233
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 234 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 293
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 294 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 339
Query: 260 N 260
           N
Sbjct: 340 N 340

>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor Length = 455

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 176 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 234
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 235 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 294
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 295 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 340
Query: 260 N 260
           N
Sbjct: 341 N 341

>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1 Length = 388

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFSFWL--------NRDPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS  L          +  A  G
Sbjct: 116 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVG 174
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 175 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 234
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 235 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 280
Query: 260 N 260
           N
Sbjct: 281 N 281

>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a Length = 385

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFSFWL--------NRDPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS  L          +  A  G
Sbjct: 113 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVG 171
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 172 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 231
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 232 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 277
Query: 260 N 260
           N
Sbjct: 278 N 278

>pdb|2VIE|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2-Hydroxy- 3-((1,1, 5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2- Oxopyrrolidin-1-Yl)benzamide Length = 392

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFSFWL--------NRDPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS  L          +  A  G
Sbjct: 114 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVG 172
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 173 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 232
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 233 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 278
Query: 260 N 260
           N
Sbjct: 279 N 279

>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid (2-Mercapto-Ethyl)- Amide Length = 405

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 93  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEG 142
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+ +  A  G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 143 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 199
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSG 
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGC 251
Query: 200 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 259
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 260 N 260
           N
Sbjct: 298 N 298

>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex Length = 361

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 17/108 (15%)
Query: 117 NMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGD 176
           N+ +QGL+S  +FS ++N +      GE+VFGGV+     G   Y  V  + Y  +   D
Sbjct: 157 NLYKQGLISSPLFSVYMNTNSGT---GEVVFGGVNNTLLGGDIAYTDVMSR-YGGYYFWD 212
Query: 177 ILIGNQSTGVCEGGCAAI---------VDSGTSLLAGPTPVVTEINHA 215
             +    TG+   G AA+         +D+GT+    P+   ++I  A
Sbjct: 213 APV----TGITVDGSAAVRFSRPQAFTIDTGTNFFIMPSSAASKIVKA 256

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	412
1qdm_A	478	Prophytepsin; aspartic proteinases, saposin-like d	1e-163
1b5f_A	239	Protein (cardosin A); hydrolase, aspartic proteina	1e-90
1htr_B	329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	3e-88
1htr_B	329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	5e-36
1tzs_A	351	Cathepsin E; hydrolase, aspartic protease, activat	4e-88
1tzs_A	351	Cathepsin E; hydrolase, aspartic protease, activat	2e-36
1dpj_A	329	Proteinase A; proteinase A, hydrolase-hydrolase in	3e-85
1dpj_A	329	Proteinase A; proteinase A, hydrolase-hydrolase in	9e-36
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	1e-84
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	5e-29
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	5e-83
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	3e-37
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	1e-82
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	8e-38
1am5_A	324	Pepsin, acid proteinase; aspartyl protease, hydrol	2e-82
1am5_A	324	Pepsin, acid proteinase; aspartyl protease, hydrol	3e-34
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	8e-82
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	5e-37
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	4e-81
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	1e-29
1mpp_A	361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	8e-78
1mpp_A	361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	6e-26
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	1e-77
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	1e-32
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	4e-77
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	1e-34
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	4e-77
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	8e-31
2apr_A	325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	1e-76
2apr_A	325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	1e-26
1lya_B	241	Cathepsin D; lysosomal aspartic protease; HET: NAG	1e-76
1lya_B	241	Cathepsin D; lysosomal aspartic protease; HET: NAG	3e-39
2ewy_A	383	Beta-secretase 2; BACE2, aspartic protease, hydrol	5e-76
2ewy_A	383	Beta-secretase 2; BACE2, aspartic protease, hydrol	1e-22
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	5e-74
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	2e-29
3lpj_A	455	Beta-secretase 1; alzheimer'S, aspartyl protease,	8e-71
3lpj_A	455	Beta-secretase 1; alzheimer'S, aspartyl protease,	6e-23
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	2e-70
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	7e-25
2qp8_A	395	Beta-secretase 1; BACE1, protease, alternative spl	8e-70
2qp8_A	395	Beta-secretase 1; BACE1, protease, alternative spl	9e-23
3pvk_A	342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	6e-69
3pvk_A	342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	2e-24
1oew_A	329	Endothiapepsin; hydrolase, aspartic proteinase mec	6e-69
1oew_A	329	Endothiapepsin; hydrolase, aspartic proteinase mec	6e-23
2qzx_A	342	Candidapepsin-5; aspartic proteinase, aspartyl pro	1e-68
2qzx_A	342	Candidapepsin-5; aspartic proteinase, aspartyl pro	2e-26
1j71_A	334	Candidapepsin, aspartic proteinase; candida tropic	2e-67
1j71_A	334	Candidapepsin, aspartic proteinase; candida tropic	9e-19
3fv3_A	339	SAPP1P-secreted aspartic protease 1; secreted aspa	3e-65
3fv3_A	339	SAPP1P-secreted aspartic protease 1; secreted aspa	1e-24
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	4e-65
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	4e-25
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	2e-64
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	2e-25
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	8e-63
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	2e-23
3rfi_A	108	Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuber	4e-41
1b5f_B	87	Protein (cardosin A); hydrolase, aspartic proteina	1e-40
2qyp_A	91	Proactivator polypeptide; saposin, activator prote	7e-14
2qyp_A	91	Proactivator polypeptide; saposin, activator prote	1e-08
3bqp_A	80	Proactivator polypeptide; saposin, sphingolipid ac	7e-14
3bqp_A	80	Proactivator polypeptide; saposin, sphingolipid ac	8e-09
2gtg_A	83	Proactivator polypeptide; saposin, sphingolipid ac	2e-13
2gtg_A	83	Proactivator polypeptide; saposin, sphingolipid ac	2e-08
3aup_A	403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	1e-09
3aup_A	403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	5e-07
4ddj_A	83	Saposin-A, protein A; saposin fold, sphingolipid a	1e-08
4ddj_A	83	Saposin-A, protein A; saposin fold, sphingolipid a	6e-07
1nkl_A	78	NK-lysin; saposin fold, antibacterial peptide, tum	2e-07
1lya_A	97	Cathepsin D; lysosomal aspartic protease; HET: NAG	4e-07
3vla_A	413	EDGP; extracellular, inhibitor, plant protein; HET	6e-07
1t6e_X	381	Xylanase inhibitor; two beta-barrel domain structu	3e-06
1t6e_X	381	Xylanase inhibitor; two beta-barrel domain structu	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1n69_A	81	Saposin B; lipid binding protein, glycosphingolipi	4e-05
2js9_A	99	Saposin-like protein family protein 5; caenopore-5	1e-04

>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478

 Score =  465 bits (1199), Expect = e-163
 Identities = 240/370 (64%), Positives = 297/370 (80%), Gaps = 3/370 (0%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           GK   I YG+GSI+G+FS+D+V VGD+VVKDQ FIEAT+E  +TFL+A+FDGI+GLGF+E
Sbjct: 109 GKPAAIQYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKE 168

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           I+VG AVPVW  M+EQGLVS+ VFSFWLNR  D  EGGEI+FGG+DPKH+ G+HTYVPVT
Sbjct: 169 ISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVT 228

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 225
           +KGYWQF++GD+L+G +STG C GGCAAI DSGTSLLAGPT ++TEIN  IG  GVVS E
Sbjct: 229 QKGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQE 288

Query: 226 CKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEK---ENVSAGD 282
           CK +VSQYG  I DLL++   P+K+C Q+GLC F+G   VS GI++VV+    ++     
Sbjct: 289 CKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRA 348

Query: 283 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSF 342
             +CSACEMAVVW+QNQL Q +T++ +L Y+N+LC+ LP+PMGES +DC  + +MP++ F
Sbjct: 349 DPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEF 408

Query: 343 TIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSG 402
           TIG K F L PE+YILK GEG A  CISGF A D+PPPRGPLWILGDVFMG YHTVFD G
Sbjct: 409 TIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYG 468

Query: 403 KLRIGFAEAA 412
           KLRIGFA+AA
Sbjct: 469 KLRIGFAKAA 478

>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239

 Score =  272 bits (699), Expect = 1e-90
 Identities = 110/173 (63%), Positives = 132/173 (76%), Gaps = 4/173 (2%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G    I YG+GSI+GFFSQD+V +GD+VVK+Q FIEAT E    FL   FDGI+GL F+ 
Sbjct: 70  GTFGAIIYGTGSITGFFSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLSFQT 129

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           I+V    PVW NM+ QGLV E  FSFWLNR+ D EEGGE+VFGG+DP HF+G HTYVPVT
Sbjct: 130 ISV----PVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVT 185

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
            + YWQF +GD+LIG++STG C  GC A  DSGTSLL+GPT +VT+INHAIG 
Sbjct: 186 YQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGA 238

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329

 Score =  269 bits (691), Expect = 3e-88
 Identities = 69/190 (36%), Positives = 108/190 (56%), Gaps = 5/190 (2%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G++  + YGSGS++GFF  D + V  + V +Q F  +  E    F+ A+FDGI+GL +  
Sbjct: 68  GQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPA 127

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           ++V +A      MV++G ++  VFS +L+       GG +VFGGVD   + G+  + PVT
Sbjct: 128 LSVDEATTAMQGMVQEGALTSPVFSVYLSNQ-QGSSGGAVVFGGVDSSLYTGQIYWAPVT 186

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE----GV 221
           ++ YWQ  + + LIG Q++G C  GC AIVD+GTSLL  P   ++ +  A G +    G 
Sbjct: 187 QELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQEDEYGQ 246

Query: 222 VSAECKLVVS 231
               C  + +
Sbjct: 247 FLVNCNSIQN 256

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329

 Score =  133 bits (338), Expect = 5e-36
 Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 5/105 (4%)

Query: 309 VLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 368
            +S + +   +  +  G+ +++C+ I  +P+++F I    F L P  YIL         C
Sbjct: 229 YMSALLQATGAQEDEYGQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILSNNG----YC 284

Query: 369 ISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
             G     L    G PLWILGDVF+  Y++V+D G  R+GFA AA
Sbjct: 285 TVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351

 Score =  270 bits (692), Expect = 4e-88
 Identities = 80/189 (42%), Positives = 113/189 (59%), Gaps = 4/189 (2%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G+S  I YG+GS+SG    D V V  + V  Q F E+  E   TF+ A FDGI+GLG+  
Sbjct: 79  GQSFSIQYGTGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPS 138

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           +AVG   PV+DNM+ Q LV   +FS +++ +P+   G E++FGG D  HF G   +VPVT
Sbjct: 139 LAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVT 198

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG---EGVV 222
           K+ YWQ  L +I +G      C  GC AIVD+GTSL+ GP+  + ++ +AIG    +G  
Sbjct: 199 KQAYWQIALDNIQVGGT-VMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPVDGEY 257

Query: 223 SAECKLVVS 231
           + EC  +  
Sbjct: 258 AVECANLNV 266

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351

 Score =  135 bits (342), Expect = 2e-36
 Identities = 39/88 (44%), Positives = 52/88 (59%)

Query: 324 MGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGP 383
            GE  ++C  +  MP+V+FTI    + LSP  Y L       + C SGF   D+ PP GP
Sbjct: 254 DGEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGP 313

Query: 384 LWILGDVFMGVYHTVFDSGKLRIGFAEA 411
           LWILGDVF+  +++VFD G  R+G A A
Sbjct: 314 LWILGDVFIRQFYSVFDRGNNRVGLAPA 341

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329

 Score =  262 bits (671), Expect = 3e-85
 Identities = 72/191 (37%), Positives = 109/191 (57%), Gaps = 7/191 (3%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G    I YG+GS+ G+ SQD + +GD+ +  Q F EAT E  LTF   +FDGI+GLG+  
Sbjct: 69  GTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDT 128

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNR-DPDAEEGGEIVFGGVDPKHFKGKHTYVPV 164
           I+V   VP + N ++Q L+ E+ F+F+L     D E GGE  FGG+D   FKG  T++PV
Sbjct: 129 ISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPV 188

Query: 165 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE----G 220
            +K YW+ +   I +G++   +      A +D+GTSL+  P+ +   IN  IG +    G
Sbjct: 189 RRKAYWEVKFEGIGLGDEYAELE--SHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWTG 246

Query: 221 VVSAECKLVVS 231
             + +C    +
Sbjct: 247 QYTLDCNTRDN 257

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329

 Score =  132 bits (335), Expect = 9e-36
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 308 KVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEV 367
            +   IN    +     G+  +DC+    +P++ F      F + P  Y L+        
Sbjct: 229 GLAEMINAEIGAKKGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVSGS---- 284

Query: 368 CISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
           CIS     D P P GPL I+GD F+  Y++++D G   +G A+A
Sbjct: 285 CISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKA 328

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323

 Score =  260 bits (667), Expect = 1e-84
 Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 8/190 (4%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           GK   I+YG+GS+ G    D V V ++V   Q    +T+E    F  A FDGI+G+ +  
Sbjct: 70  GKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPS 129

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           +A   ++PV+DNM+ + LV++++FS +++R+        +  G +DP ++ G   +VPVT
Sbjct: 130 LASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQ---ESMLTLGAIDPSYYTGSLHWVPVT 186

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG----EGV 221
            + YWQF +  + I       CEGGC AI+D+GTS L GP+  +  I  AIG      G 
Sbjct: 187 VQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGE 245

Query: 222 VSAECKLVVS 231
              +C  +  
Sbjct: 246 FDIDCDNLSY 255

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323

 Score =  114 bits (287), Expect = 5e-29
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 309 VLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 368
            +  I +   +  N  GE  IDCD +  MP V F I  K++ L+P  Y  +        C
Sbjct: 228 DILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQDQG----FC 283

Query: 369 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
            SGF + +        WILGDVF+  Y++VFD     +G A+A
Sbjct: 284 TSGFQSENH----SQKWILGDVFIREYYSVFDRANNLVGLAKA 322

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383

 Score =  258 bits (661), Expect = 5e-83
 Identities = 72/175 (41%), Positives = 114/175 (65%), Gaps = 4/175 (2%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G    + Y +G++SGF SQD + VG + V  Q+F E T   +L F+LA FDG++G+GF E
Sbjct: 119 GTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVVGMGFIE 177

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPD--AEEGGEIVFGGVDPKHFKGKHTYVP 163
            A+G   P++DN++ QG++ E+VFSF+ NRD +     GG+IV GG DP+H++G   Y+ 
Sbjct: 178 QAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYIN 237

Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
           + K G WQ ++  + +G+  T +CE GC A+VD+G S ++G T  + ++  A+G 
Sbjct: 238 LIKTGVWQIQMKGVSVGSS-TLLCEDGCLALVDTGASYISGSTSSIEKLMEALGA 291

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383

 Score =  138 bits (349), Expect = 3e-37
 Identities = 31/86 (36%), Positives = 49/86 (56%)

Query: 326 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 385
           + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W
Sbjct: 297 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 356

Query: 386 ILGDVFMGVYHTVFDSGKLRIGFAEA 411
            LG  F+  ++T FD    RIGFA A
Sbjct: 357 ALGATFIRKFYTEFDRRNNRIGFALA 382

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370

 Score =  256 bits (657), Expect = 1e-82
 Identities = 70/190 (36%), Positives = 108/190 (56%), Gaps = 7/190 (3%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
            +   I YG+GS++G    D V+VG +   +Q+F  +  E       A FDGI+GL +  
Sbjct: 112 SQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPS 171

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           I+   A PV+DN+ +QGLVS+++FS +L+ +   + G  ++ GG+D  ++ G   +VPV+
Sbjct: 172 ISASGATPVFDNLWDQGLVSQDLFSVYLSSND--DSGSVVLLGGIDSSYYTGSLNWVPVS 229

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG----EGV 221
            +GYWQ  L  I +  ++   C GGC AIVD+GTSLL GPT  +  I   IG     +G 
Sbjct: 230 VEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGE 288

Query: 222 VSAECKLVVS 231
           +   C  + S
Sbjct: 289 MVISCSSIDS 298

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370

 Score =  139 bits (352), Expect = 8e-38
 Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 4/104 (3%)

Query: 309 VLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 368
            ++ I     +  N  GE +I C  I ++P++ FTI    + LSP  YIL+  +     C
Sbjct: 271 AIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDS----C 326

Query: 369 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
            SGF   D+P   G LWILGDVF+  Y+TVFD    ++G A  A
Sbjct: 327 TSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324

 Score =  254 bits (652), Expect = 2e-82
 Identities = 71/189 (37%), Positives = 98/189 (51%), Gaps = 7/189 (3%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           GK+ ++ YG+G + G   QD V VG     +Q   E+  E       A FDGI+GL +  
Sbjct: 68  GKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAYPS 127

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           IA   AVPV+DNM  Q LV +++FSF+L+       G E++ GGVD  H+ G   ++PVT
Sbjct: 128 IAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGG--ANGSEVMLGGVDNSHYTGSIHWIPVT 185

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE---GVV 222
            + YWQ  L  I +  Q+      GC AIVD+GTS +  P   +  I   IG     G +
Sbjct: 186 AEKYWQVALDGITVNGQT--AACEGCQAIVDTGTSKIVAPVSALANIMKDIGASENQGEM 243

Query: 223 SAECKLVVS 231
              C  V S
Sbjct: 244 MGNCASVQS 252

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324

 Score =  128 bits (325), Expect = 3e-34
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 324 MGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGP 383
            GE + +C  + ++P+++FTI      L P  YI          C SG  +  +P     
Sbjct: 240 QGEMMGNCASVQSLPDITFTINGVKQPLPPSAYIEGDQA----FCTSGLGSSGVPSNTSE 295

Query: 384 LWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
           LWI GDVF+  Y+T++D    ++GFA AA
Sbjct: 296 LWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341

 Score =  253 bits (649), Expect = 8e-82
 Identities = 72/175 (41%), Positives = 114/175 (65%), Gaps = 4/175 (2%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G    + Y +G++SGF SQD + VG + V  Q+F E T   +L F+LA FDG++G+GF E
Sbjct: 76  GTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVVGMGFIE 134

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPD--AEEGGEIVFGGVDPKHFKGKHTYVP 163
            A+G   P++DN++ QG++ E+VFSF+ NRD +     GG+IV GG DP+H++G   Y+ 
Sbjct: 135 QAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYIN 194

Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
           + K G WQ ++  + +G+  T +CE GC A+VD+G S ++G T  + ++  A+G 
Sbjct: 195 LIKTGVWQIQMKGVSVGSS-TLLCEDGCLALVDTGASYISGSTSSIEKLMEALGA 248

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341

 Score =  136 bits (345), Expect = 5e-37
 Identities = 31/86 (36%), Positives = 49/86 (56%)

Query: 326 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 385
           + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W
Sbjct: 254 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 313

Query: 386 ILGDVFMGVYHTVFDSGKLRIGFAEA 411
            LG  F+  ++T FD    RIGFA A
Sbjct: 314 ALGATFIRKFYTEFDRRNNRIGFALA 339

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330

 Score =  251 bits (643), Expect = 4e-81
 Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 12/194 (6%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G      + +GS  G   +D++ +  +    Q  + A         +   D ++G+    
Sbjct: 72  GNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLADELSQ-EVCILSADVVVGIAAPG 130

Query: 106 IA-VGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV 164
                    V +N VE+ L++  VFS    R  D E  GEI+FGG D K+  G+ TYVP+
Sbjct: 131 CPNALKGKTVLENFVEENLIAP-VFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPL 189

Query: 165 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG------ 218
                W+F L  + IG+ +  V   G  AI+D+  +++ GP   V  IN AIG       
Sbjct: 190 VGDDSWKFRLDGVKIGDTT--VAPAGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVEKTT 247

Query: 219 -EGVVSAECKLVVS 231
              +   +C  + S
Sbjct: 248 TRRICKLDCSKIPS 261

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330

 Score =  116 bits (293), Expect = 1e-29
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 321 PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 380
                   +DC +IP++P+V+F I  + FN+S + YI + G     +C SGF     P  
Sbjct: 246 TTTRRICKLDCSKIPSLPDVTFVINGRNFNISSQYYIQQNGN----LCYSGFQ----PCG 297

Query: 381 RGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
               + +GD F+  Y++ F+     +GF  +
Sbjct: 298 HSDHFFIGDFFVDHYYSEFNWENKTMGFGRS 328

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361

 Score =  244 bits (624), Expect = 8e-78
 Identities = 48/196 (24%), Positives = 80/196 (40%), Gaps = 18/196 (9%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLA-----RFDGIIG 100
             +  I YG+G  +G + +D++ VG   VK Q           T   +       DGI G
Sbjct: 75  DYNLNITYGTGGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFG 134

Query: 101 LGFREIAVGDA------VPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKH 154
             + +    +A        V  N+ +QGL+S  VFS ++N +     GG++VFGGV+   
Sbjct: 135 AAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDG---GGQVVFGGVNNTL 191

Query: 155 FKGKHTYVPVTKKG----YWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVT 210
             G   Y  V K      +W   +  + I        +G  A  +D+GT+    P+    
Sbjct: 192 LGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAFTIDTGTNFFIAPSSFAE 251

Query: 211 EINHAIGGEGVVSAEC 226
           ++  A   +   S + 
Sbjct: 252 KVVKAALPDATESQQG 267

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361

 Score =  106 bits (267), Expect = 6e-26
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 321 PNPMGESIIDCDRIP-TMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM-AFDLP 378
                   + C +   +    S  +     +       +   + +  V  SG    F + 
Sbjct: 262 TESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVL 321

Query: 379 PPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
           P  G  +I+G++F+  +  V+D GK RIGFA  A
Sbjct: 322 PDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLA 355

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375

 Score =  243 bits (623), Expect = 1e-77
 Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 8/174 (4%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREG-SLTFLLARFDGIIGLGFR 104
           G   +I YGSG++ GFFS+D V +G + +  +       +     +    FDGI+GLG++
Sbjct: 118 GTKVDITYGSGTVKGFFSKDLVTLGHLSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGWK 177

Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV 164
           ++++G   P+   +  Q  +   +F+F+L         G +  GG++ K ++G  TY  +
Sbjct: 178 DLSIGSIDPIVVELKNQNKIDNALFTFYLPVHD--VHAGYLTIGGIEEKFYEGNITYEKL 235

Query: 165 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
               YWQ +L D+  G Q           IVDSGT+ +  P+  + +    +  
Sbjct: 236 NHDLYWQIDL-DVHFGKQ----TMEKANVIVDSGTTTITAPSEFLNKFFANLNV 284

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375

 Score =  125 bits (317), Expect = 1e-32
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 313 INELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGF 372
                + +  P     +       MP + F   +  + L PE Y+    E    +C+   
Sbjct: 278 FFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITM 337

Query: 373 MAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
           +  D+       +ILGD FM  Y TVFD  K  +GFA A
Sbjct: 338 LPVDID---SNTFILGDPFMRKYFTVFDYDKESVGFAIA 373

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453

 Score =  245 bits (627), Expect = 4e-77
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 10/183 (5%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSL--TFLLARFDGIIGLGF 103
           G   E+NY SG++SGFFS+D V VG++ +  + FIE         T+  + FDGI+GLG+
Sbjct: 194 GTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILGLGW 252

Query: 104 REIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
           +++++G   P+   +  Q  +   +F+F+L      +  G +  GG++ + ++G  TY  
Sbjct: 253 KDLSIGSVDPIVVELKNQNKIENALFTFYLPVHD--KHTGFLTIGGIEERFYEGPLTYEK 310

Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVS 223
           +    YWQ  L           +       IVDSGTS +  PT  + ++   +    V  
Sbjct: 311 LNHDLYWQITLDAH-----VGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLDVIKVPF 365

Query: 224 AEC 226
              
Sbjct: 366 LPF 368

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453

 Score =  132 bits (334), Expect = 1e-34
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 3/103 (2%)

Query: 309 VLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 368
            L+ + +  D +  P     +       +P   FT  +  + L PE Y+    +    +C
Sbjct: 350 FLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLC 409

Query: 369 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
           +   +  D P    P +ILGD FM  Y TVFD     +G A A
Sbjct: 410 MLNIIGLDFPV---PTFILGDPFMRKYFTVFDYDNHSVGIALA 449

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451

 Score =  245 bits (626), Expect = 4e-77
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 10/176 (5%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLT--FLLARFDGIIGLGF 103
               ++   +G+ISG FS+D V +G + V  + FIE T        +  +  DG+ GLG+
Sbjct: 193 DTPVKLTSKAGTISGIFSKDLVTIGKLSVPYK-FIEMTEIVGFEPFYSESDVDGVFGLGW 251

Query: 104 REIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
           +++++G   P    +  Q  + + V+S +L    + +  G +  GG++ + F G   Y  
Sbjct: 252 KDLSIGSIDPYIVELKTQNKIEQAVYSIYLPP--ENKNKGYLTIGGIEERFFDGPLNYEK 309

Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 219
           +     WQ +L D+  GN    V       I+DS TS++  PT    +   +    
Sbjct: 310 LNHDLMWQVDL-DVHFGN----VSSKKANVILDSATSVITVPTEFFNQFVESASVF 360

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451

 Score =  121 bits (306), Expect = 8e-31
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 308 KVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEV 367
           +  +   E       P     +       +P + +   +K++ L P+QY+       + +
Sbjct: 348 EFFNQFVESASVFKVPFLSLYVTTCGNTKLPTLEYRSPNKVYTLEPKQYLEPLENIFSAL 407

Query: 368 CISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
           C+   +  DL       ++LGD FM  Y TV+D     +GFA A
Sbjct: 408 CMLNIVPIDLE---KNTFVLGDPFMRKYFTVYDYDNHTVGFALA 448

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325

 Score =  239 bits (613), Expect = 1e-76
 Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 8/176 (4%)

Query: 46  GKSCEINYGSG-SISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
           G++  I+YG G S SG  ++DNV +G +++K Q    A RE + +F     DG++GLGF 
Sbjct: 70  GRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAA-SFASGPNDGLLGLGFD 128

Query: 105 EI-AVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
            I  V       DN++ QGL+S  +F  +L +  +   GGE +FGG D   FKG  T VP
Sbjct: 129 TITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKNG-GGGEYIFGGYDSTKFKGSLTTVP 187

Query: 164 V-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
           +   +G+W   +    +G             I+D+GT+LL  P  +   +  A G 
Sbjct: 188 IDNSRGWWGITVDRATVGTS---TVASSFDGILDTGTTLLILPNNIAASVARAYGA 240

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325

 Score =  107 bits (270), Expect = 1e-26
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 309 VLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 368
           + + +     +  N  G   I CD       + F+I    F +SP+  + +  +G    C
Sbjct: 230 IAASVARAYGASDNGDGTYTISCDTSA-FKPLVFSINGASFQVSPDSLVFEEFQGQ---C 285

Query: 369 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
           I+GF             I+GD F+   + VF+ G   +  A  A
Sbjct: 286 IAGFG-----YGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324

>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241

 Score =  236 bits (605), Expect = 1e-76
 Identities = 73/167 (43%), Positives = 113/167 (67%), Gaps = 1/167 (0%)

Query: 70  GDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVF 129
           G V V+ QVF EAT++  +TF+ A+FDGI+G+ +  I+V + +PV+DN+++Q LV + +F
Sbjct: 1   GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIF 60

Query: 130 SFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEG 189
           SF+L+RDPDA+ GGE++ GG D K++KG  +Y+ VT+K YWQ  L  + + +  T +C+ 
Sbjct: 61  SFYLSRDPDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLT-LCKE 119

Query: 190 GCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDL 236
           GC AIVD+GTSL+ GP   V E+  AIG   ++  E  +   +   L
Sbjct: 120 GCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIPCEKVSTL 166

>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241

 Score =  139 bits (353), Expect = 3e-39
 Identities = 48/105 (45%), Positives = 69/105 (65%)

Query: 308 KVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEV 367
             +  + +   ++P   GE +I C+++ T+P ++  +G K + LSPE Y LK  +    +
Sbjct: 137 DEVRELQKAIGAVPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTL 196

Query: 368 CISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
           C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+GFAEAA
Sbjct: 197 CLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 241

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383

 Score =  240 bits (614), Expect = 5e-76
 Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 13/206 (6%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLL--ARFDGIIGLGF 103
           G    + Y  GS +GF  +D V +        +   AT   S  F L   +++GI+GL +
Sbjct: 65  GFDVTVKYTQGSWTGFVGEDLVTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAY 124

Query: 104 REIAVGD--AVPVWDNMVEQGLVSEEVFSFWL-----NRDPDAEEGGEIVFGGVDPKHFK 156
             +A         +D++V Q  +   VFS  +             GG +V GG++P  +K
Sbjct: 125 ATLAKPSSSLETFFDSLVTQANIPN-VFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYK 183

Query: 157 GKHTYVPVTKKGYWQFELGDILIGNQSTGVC---EGGCAAIVDSGTSLLAGPTPVVTEIN 213
           G   Y P+ ++ Y+Q E+  + IG QS  +         AIVDSGT+LL  P  V   + 
Sbjct: 184 GDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVV 243

Query: 214 HAIGGEGVVSAECKLVVSQYGDLIWD 239
            A+    ++        +      W 
Sbjct: 244 EAVARASLIPEFSDGFWTGSQLACWT 269

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383

 Score = 97.6 bits (243), Expect = 1e-22
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 327 SIIDCDRIPTMPNVSFTIGDKI------FNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 380
                      P +S  + D+         + P+ YI              F       P
Sbjct: 268 WTNSETPWSYFPKISIYLRDENSSRSFRITILPQLYIQPMMGAGLNYECYRFG----ISP 323

Query: 381 RGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
                ++G   M  ++ +FD  + R+GFA +
Sbjct: 324 STNALVIGATVMEGFYVIFDRAQKRVGFAAS 354

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340

 Score =  233 bits (597), Expect = 5e-74
 Identities = 48/194 (24%), Positives = 73/194 (37%), Gaps = 20/194 (10%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
                + YGSGS SG    D V +G + +  Q    A+R+          DGI+G+G  +
Sbjct: 56  SDKVSVTYGSGSFSGTEYTDTVTLGSLTIPKQSIGVASRDSGFDG----VDGILGVGPVD 111

Query: 106 IAVGDAVP--------VWDNMVEQGLVSEEVFSFWLNR-DPDAEEGGEIVFGGVDPKHFK 156
           + VG   P        V DN+  QG +   + +        ++   GE+ FG  D   + 
Sbjct: 112 LTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYT 171

Query: 157 GKHTYVPVTK----KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212
           G  TY P+T       YW          + S        A IVD+GT+L    +    + 
Sbjct: 172 GSITYTPITSTSPASAYWGINQSIRYGSSTS---ILSSTAGIVDTGTTLTLIASDAFAKY 228

Query: 213 NHAIGGEGVVSAEC 226
             A G     +   
Sbjct: 229 KKATGAVADNNTGL 242

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340

 Score =  115 bits (291), Expect = 2e-29
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 325 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTG-----EGIAEVCISGFMAFDLPP 379
           G   +   +   + ++ FTIG + F L+    I          G A              
Sbjct: 241 GLLRLTTAQYANLQSLFFTIGGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDS 300

Query: 380 PRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
             G  +I G  F+  +++V+D+   R+G A  +
Sbjct: 301 GEGLDFINGLTFLERFYSVYDTTNKRLGLATTS 333

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455

 Score =  229 bits (584), Expect = 8e-71
 Identities = 48/209 (22%), Positives = 77/209 (36%), Gaps = 16/209 (7%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEV--GDVVVKDQVFIEATREGSLTFLLARFDGIIGLGF 103
            K   + Y  G   G    D V +  G  V         T         + ++GI+GL +
Sbjct: 126 RKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAY 185

Query: 104 REIAVGD--AVPVWDNMVEQGLVSEEVFSFWLNR--------DPDAEEGGEIVFGGVDPK 153
            EIA  D    P +D++V+Q  V   +FS  L          +  A  GG ++ GG+D  
Sbjct: 186 AEIARPDDSLEPFFDSLVKQTHV-PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHS 244

Query: 154 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVC---EGGCAAIVDSGTSLLAGPTPVVT 210
            + G   Y P+ ++ Y++  +  + I  Q   +         +IVDSGT+ L  P  V  
Sbjct: 245 LYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 304

Query: 211 EINHAIGGEGVVSAECKLVVSQYGDLIWD 239
               +I                   + W 
Sbjct: 305 AAVKSIKAASSTEKFPDGFWLGEQLVCWQ 333

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455

 Score = 99.3 bits (247), Expect = 6e-23
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 13/94 (13%)

Query: 327 SIIDCDRIPTMPNVSFTIGDKI------FNLSPEQYILKTGEGI--AEVCISGFMAFDLP 378
                      P +S  +  ++        + P+QY+    +     + C    +     
Sbjct: 332 WQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI----- 386

Query: 379 PPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
                  ++G V M  ++ VFD  + RIGFA +A
Sbjct: 387 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSA 420

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329

 Score =  224 bits (572), Expect = 2e-70
 Identities = 47/178 (26%), Positives = 65/178 (36%), Gaps = 13/178 (7%)

Query: 46  GKSCEINYGSG-SISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
           G S  I+YG G S SG    D V +G   V  Q    ATR  +         G++GL F 
Sbjct: 72  GASWSISYGDGSSSSGDVYTDKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAFD 131

Query: 105 EIAVGDAVPVW---DNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTY 161
                   P      N      ++E +F+  L         G   FG +D    KG   Y
Sbjct: 132 SGNQVRPHPQKTWFSNA--ASSLAEPLFTADLRHGQ----NGSYNFGYIDTSVAKGPVAY 185

Query: 162 VPV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
            PV   +G+W+F      +G     +       I D+GT+LL     VV      +  
Sbjct: 186 TPVDNSQGFWEFTASGYSVGGGK--LNRNSIDGIADTGTTLLLLDDNVVDAYYANVQS 241

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329

 Score =  103 bits (258), Expect = 7e-25
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 366
           + V+        S      +  +  D    +P+ SF +G     +  +   L   E  + 
Sbjct: 229 DNVVDAYYANVQSAQYDNQQEGVVFDCDEDLPSFSFGVGSSTITIPGDLLNLTPLEEGSS 288

Query: 367 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 410
            C  G            + I GDV +     VFD G  R+G+A+
Sbjct: 289 TCFGGLQ----SSSGIGINIFGDVALKAALVVFDLGNERLGWAQ 328

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395

 Score =  224 bits (573), Expect = 8e-70
 Identities = 48/209 (22%), Positives = 77/209 (36%), Gaps = 16/209 (7%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEV--GDVVVKDQVFIEATREGSLTFLLARFDGIIGLGF 103
            K   + Y  G   G    D V +  G  V         T         + ++GI+GL +
Sbjct: 73  RKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAY 132

Query: 104 REIAVGD--AVPVWDNMVEQGLVSEEVFSFWLNR--------DPDAEEGGEIVFGGVDPK 153
            EIA  D    P +D++V+Q  V   +FS  L          +  A  GG ++ GG+D  
Sbjct: 133 AEIARPDDSLEPFFDSLVKQTHV-PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHS 191

Query: 154 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVC---EGGCAAIVDSGTSLLAGPTPVVT 210
            + G   Y P+ ++ Y++  +  + I  Q   +         +IVDSGT+ L  P  V  
Sbjct: 192 LYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 251

Query: 211 EINHAIGGEGVVSAECKLVVSQYGDLIWD 239
               +I                   + W 
Sbjct: 252 AAVKSIKAASSTEKFPDGFWLGEQLVCWQ 280

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395

 Score = 98.0 bits (244), Expect = 9e-23
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 13/97 (13%)

Query: 324 MGESIIDCDRIPTMPNVSFTIGDKI------FNLSPEQYILKTGEGI--AEVCISGFMAF 375
           +             P +S  +  ++        + P+QY+    +     + C    +  
Sbjct: 276 LVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI-- 333

Query: 376 DLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
                     ++G V M  ++ VFD  + RIGFA +A
Sbjct: 334 ---SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSA 367

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342

 Score =  220 bits (563), Expect = 6e-69
 Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 46  GKSCEINYGSGSIS-GFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
               +I YG GS S G   +D V  G V +K+QV  +               GI+G+G++
Sbjct: 77  NTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTSI-------DQGILGVGYK 129

Query: 105 EIAVGDAVP-VWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
               G +   V   + +QG++++  +S +LN        G+I+FGGVD   + G    +P
Sbjct: 130 TNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPD--AATGQIIFGGVDNAKYSGSLIALP 187

Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
           VT     +  LG + +  ++  +       ++DSGT++      +  +I  A  G
Sbjct: 188 VTSDRELRISLGSVEVSGKT--INTDNVDVLLDSGTTITYLQQDLADQIIKAFNG 240

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342

 Score =  102 bits (255), Expect = 2e-24
 Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 8/106 (7%)

Query: 307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGD-KIFNLSPEQYILKTGEGIA 365
           ++++   N       N      +DC+      +V F        ++   ++         
Sbjct: 232 DQIIKAFNGKLTQDSNGNSFYEVDCN---LSGDVVFNFSKNAKISVPASEFAASLQGD-- 286

Query: 366 EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
                 +    L        ILGD F+   + V+D     I  A+ 
Sbjct: 287 --DGQPYDKCQLLFDVNDANILGDNFLRSAYIVYDLDDNEISLAQV 330

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329

 Score =  220 bits (562), Expect = 6e-69
 Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 13/178 (7%)

Query: 46  GKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
           G +  I+YG GS  SG    D V VG + V  Q    A +  S     +  DG++GL F 
Sbjct: 71  GATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFS 130

Query: 105 EIAVGDAVPVW---DNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTY 161
            +            DN   +  +   VF+  L         G   FG +D   + G  TY
Sbjct: 131 TLNTVSPTQQKTFFDNA--KASLDSPVFTADLGYHA----PGTYNFGFIDTTAYTGSITY 184

Query: 162 VPV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
             V TK+G+W++      +G+ +          I D+GT+LL  P  VV+     + G
Sbjct: 185 TAVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVSAYWAQVSG 240

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329

 Score = 97.3 bits (243), Expect = 6e-23
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 7/91 (7%)

Query: 320 LPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPP 379
             + +G  +  C    T+P+ +F +G     +  +          +  C  G        
Sbjct: 243 SSSSVGGYVFPCS--ATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQ----SS 296

Query: 380 PRGPLWILGDVFMGVYHTVFDSG-KLRIGFA 409
               + I GDV +     VF+      +GFA
Sbjct: 297 AGIGINIFGDVALKAAFVVFNGATTPTLGFA 327

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342

 Score =  219 bits (561), Expect = 1e-68
 Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 15/176 (8%)

Query: 46  GKSCEINYGSGSI-SGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
               +I YG GS   G   +D V +G V V+DQ+F             +   GI+G+GF+
Sbjct: 77  NTRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFANVWST-------SARKGILGIGFQ 129

Query: 105 EIAVGDA--VPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYV 162
                +     +  ++  QG++ +  +S +LN        G+I+FGG+D   + G    +
Sbjct: 130 SGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAE--ASTGQIIFGGIDKAKYSGSLVDL 187

Query: 163 PVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
           P+T +      L  + +  ++    +     ++DSGT++      +V  I +AIG 
Sbjct: 188 PITSEKKLTVGLRSVNVRGRN---VDANTNVLLDSGTTISYFTRSIVRNILYAIGA 240

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342

 Score =  107 bits (270), Expect = 2e-26
 Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 8/106 (7%)

Query: 307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKI-FNLSPEQYILKTGEGIA 365
             +L  I              + DC    T   + F  G+ +  ++   +++ +T     
Sbjct: 232 RNILYAIGAQMKFDSAGNKVYVADCK---TSGTIDFQFGNNLKISVPVSEFLFQTYYT-- 286

Query: 366 EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
                 F   ++        ILGD F+   + V++    +I  A  
Sbjct: 287 --SGKPFPKCEVRIRESEDNILGDNFLRSAYVVYNLDDKKISMAPV 330

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334

 Score =  216 bits (552), Expect = 2e-67
 Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 15/189 (7%)

Query: 46  GKSCEINYGSG-SISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
            +   I YG   S  G F +D V  G + +K+Q F + T         +   GI+G+GF 
Sbjct: 77  NQDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTTT-------SVDQGIMGIGFT 129

Query: 105 EIAVGDAV--PVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYV 162
               G  +   V   + +QG++++  +S +LN +      G+I+FGGVD   + G  T +
Sbjct: 130 ADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSED--ASTGKIIFGGVDNAKYTGTLTAL 187

Query: 163 PVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVV 222
           PVT     +  LG I     S          ++DSGT++         +    +G     
Sbjct: 188 PVTSSVELRVHLGSINFDGTS---VSTNADVVLDSGTTITYFSQSTADKFARIVGATWDS 244

Query: 223 SAECKLVVS 231
             E   + S
Sbjct: 245 RNEIYRLPS 253

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334

 Score = 85.8 bits (213), Expect = 9e-19
 Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 11/104 (10%)

Query: 309 VLSYINELCDSLPNPMGES-IIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEV 367
                  +  +  +   E   +    +      +F  G K   +   + ILK  +    +
Sbjct: 230 TADKFARIVGATWDSRNEIYRLPSCDLSGDAVFNFDQGVK-ITVPLSELILKDSDS--SI 286

Query: 368 CISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
           C  G              ILGD F+   + V+D     I  A+ 
Sbjct: 287 CYFGISR-------NDANILGDNFLRRAYIVYDLDDKTISLAQV 323

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339

 Score =  210 bits (537), Expect = 3e-65
 Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 23/184 (12%)

Query: 46  GKSCEINYGSGSIS-GFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGF- 103
           G +  I YG GS S G + +D V +  V +  Q   + T+        +   GI+G+G+ 
Sbjct: 71  GAAFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQT-------SVDQGILGIGYT 123

Query: 104 -----REIAVGDAVPVWDN----MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKH 154
                 + +     P +DN    + +QG +    +S +LN    + E G I+FGGVD   
Sbjct: 124 SNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSP--SAETGTIIFGGVDNAK 181

Query: 155 FKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINH 214
           + GK     VT        L  + +   S      G  A++DSGT+L   P+    ++  
Sbjct: 182 YSGKLVAEQVTSSQALTISLASVNLKGSS---FSFGDGALLDSGTTLTYFPSDFAAQLAD 238

Query: 215 AIGG 218
             G 
Sbjct: 239 KAGA 242

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339

 Score =  102 bits (257), Expect = 1e-24
 Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 10/105 (9%)

Query: 307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 366
            ++          +        IDC+   +   V          +   +Y+ + G+G   
Sbjct: 234 AQLADKAGARLVQVARDQYLYFIDCNTDTSGTTVFNFGNGAKITVPNTEYVYQNGDGT-- 291

Query: 367 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
            C+ G    D         ILGD F+   + +++     I  A+ 
Sbjct: 292 -CLWGIQPSDD-------TILGDNFLRHAYLLYNLDANTISIAQV 328

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323

 Score =  210 bits (536), Expect = 4e-65
 Identities = 51/178 (28%), Positives = 71/178 (39%), Gaps = 14/178 (7%)

Query: 46  GKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
           G +  I+YG GS  SG   +D V VG V    Q    A +  S        DG++GL F 
Sbjct: 68  GATWSISYGDGSSASGDVYKDKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFS 127

Query: 105 EIAVGDAVPVW---DNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTY 161
            I      P     DN+  +  +SE +F+  L  +      G   FG  D   + G  TY
Sbjct: 128 SINTVQPTPQKTFFDNV--KSSLSEPIFAVALKHNA----PGVYDFGYTDSSKYTGSITY 181

Query: 162 VPV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
             V   +G+W F      IG+ S          I D+GT+LL     +V      + G
Sbjct: 182 TDVDNSQGFWGFTADGYSIGSDS---SSDSITGIADTGTTLLLLDDSIVDAYYEQVNG 236

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323

 Score =  103 bits (259), Expect = 4e-25
 Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 6/106 (5%)

Query: 307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 366
           + ++    E  +       +         ++P+ S TIGD    +  E            
Sbjct: 224 DSIVDAYYEQVNGASYDSSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVG---- 279

Query: 367 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
                F             I GDVF+   + VFD+   R+GFA  A
Sbjct: 280 -NGQTFGGIQSNSG-IGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325

 Score =  208 bits (531), Expect = 2e-64
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 13/178 (7%)

Query: 46  GKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
           G S +I+YG GS  SG   +D V VG V    Q    A++  S        DG++GL F 
Sbjct: 67  GYSWDISYGDGSSASGDVYRDTVTVGGVTTNKQAVEAASKISSEFVQDTANDGLLGLAFS 126

Query: 105 EIAV---GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTY 161
            I           +D +  Q  +   +F+  L  D      G   FG +D   + G  TY
Sbjct: 127 SINTVQPKAQTTFFDTVKSQ--LDSPLFAVQLKHDA----PGVYDFGYIDDSKYTGSITY 180

Query: 162 VPV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
               + +GYW F      IG+ S      G +AI D+GT+L+     +V+     + G
Sbjct: 181 TDADSSQGYWGFSTDGYSIGDGS--SSSSGFSAIADTGTTLILLDDEIVSAYYEQVSG 236

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325

 Score =  104 bits (262), Expect = 2e-25
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 321 PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 380
               G  +  C     +P+ +  IGD    +  +          +  C  G         
Sbjct: 240 SYEAGGYVFSCS--TDLPDFTVVIGDYKAVVPGKYINYAPVSTGSSTCYGGIQ----SNS 293

Query: 381 RGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
              L ILGDVF+   + VF+S   ++GFA  A
Sbjct: 294 GLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA 325

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323

 Score =  204 bits (520), Expect = 8e-63
 Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 15/178 (8%)

Query: 46  GKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
           G +  I+YG GS  SG    D+V VG V    Q    A +  +        DG++GL F 
Sbjct: 68  GYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFS 127

Query: 105 EIAV---GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTY 161
            I           +D +  +  +++ +F+  L         G   FG +D   + G  TY
Sbjct: 128 SINTVQPQSQTTFFDTV--KSSLAQPLFAVALKHQQ----PGVYDFGFIDSSKYTGSLTY 181

Query: 162 VPV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
             V   +G+W F +     G+Q       G + I D+GT+LL     VV++    + G
Sbjct: 182 TGVDNSQGFWSFNVDSYTAGSQ----SGDGFSGIADTGTTLLLLDDSVVSQYYSQVSG 235

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323

 Score = 98.9 bits (247), Expect = 2e-23
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 7/85 (8%)

Query: 328 IIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWIL 387
           + DC     +P+ S +I      +                C+ G              I 
Sbjct: 246 VFDCS--TNLPDFSVSISGYTATVPGSLINYGPSGD-GSTCLGGIQ----SNSGIGFSIF 298

Query: 388 GDVFMGVYHTVFDSGKLRIGFAEAA 412
           GD+F+   + VFDS   ++GFA  A
Sbjct: 299 GDIFLKSQYVVFDSDGPQLGFAPQA 323

>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum} Length = 108

 Score =  140 bits (354), Expect = 4e-41
 Identities = 64/105 (60%), Positives = 86/105 (81%), Gaps = 2/105 (1%)

Query: 219 EGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN- 277
             +VS ECK +VSQYG++IWDLLVSG+ P++VC Q GLC  +GA++VS+ IKTVVE+E  
Sbjct: 4   MAIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIKTVVERETE 63

Query: 278 -VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 321
             S G++ +C+ACEMAVVW+QNQLKQ+ TKEKVL Y+N+LC+ +P
Sbjct: 64  GSSVGEAPLCTACEMAVVWMQNQLKQEGTKEKVLEYVNQLCEKIP 108

>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 87

 Score =  138 bits (349), Expect = 1e-40
 Identities = 57/87 (65%), Positives = 64/87 (73%), Gaps = 1/87 (1%)

Query: 326 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 385
           E  +DC+ + +MPNVSFTIG K F L+PEQYILK G+G A  CISGF A D     GPLW
Sbjct: 2   ELQVDCNTLSSMPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMD-ATLLGPLW 60

Query: 386 ILGDVFMGVYHTVFDSGKLRIGFAEAA 412
           ILGDVFM  YHTVFD G L +GFAEAA
Sbjct: 61  ILGDVFMRPYHTVFDYGNLLVGFAEAA 87

>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A Length = 91

 Score = 66.2 bits (161), Expect = 7e-14
 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 183 STGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE-----GVVSAECKLVVSQYGDLI 237
           S   CE  C  +V   T L+        EI  A           +S EC+ VV  YG  I
Sbjct: 4   SDVYCEV-CEFLVKEVTKLIDNNK-TEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSI 61

Query: 238 WDLLVSGLLPEKVCQQIGLC 257
             +L+  + PE VC  + LC
Sbjct: 62  LSILLEEVSPELVCSMLHLC 81

>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A Length = 91

 Score = 51.2 bits (122), Expect = 1e-08
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 282 DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI 334
               C  CE  V  V   +   +T++++L   +++C  LP  + E   +C  +
Sbjct: 4   SDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE---ECQEV 53

>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A Length = 80

 Score = 65.7 bits (160), Expect = 7e-14
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 185 GVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE-----GVVSAECKLVVSQYGDLIWD 239
           G CE  C  +V      L   +    EI  A+             +C   V++Y  ++ +
Sbjct: 3   GFCEV-CKKLVGYLDRNLEKNS-TKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIE 60

Query: 240 LLVSGLLPEKVCQQIGLC 257
           +LV  + P  VC +IG C
Sbjct: 61  ILVEVMDPSFVCLKIGAC 78

>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A Length = 80

 Score = 51.1 bits (122), Expect = 8e-09
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 282 DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI 334
           D   C  C+  V ++   L++  TK+++L+ + + C  LP+P  +    CD+ 
Sbjct: 1   DGGFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQK---QCDQF 50

>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A Length = 83

 Score = 64.2 bits (156), Expect = 2e-13
 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 182 QSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE-----GVVSAECKLVVSQYGDL 236
            S   CE  C  +V   T L+        EI  A           +S EC+ VV  YG  
Sbjct: 2   DSDVYCEV-CEFLVKEVTKLIDNNK-TEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSS 59

Query: 237 IWDLLVSGLLPEKVCQQIGLC 257
           I  +L+  + PE VC  + LC
Sbjct: 60  ILSILLEEVSPELVCSMLHLC 80

>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A Length = 83

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 281 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI 334
                C  CE  V  V   +   +T++++L   +++C  LP  + E   +C  +
Sbjct: 2   DSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE---ECQEV 52

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403

 Score = 58.6 bits (141), Expect = 1e-09
 Identities = 30/197 (15%), Positives = 55/197 (27%), Gaps = 39/197 (19%)

Query: 50  EINYGSGSIS-GFFSQDNVEVGD-----------VVVKDQVFIEATREGSLTFLLARFDG 97
             N  +     G   +D + +             V V   +F  A        L     G
Sbjct: 98  STNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQG 157

Query: 98  IIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG 157
           + GLG   I++        N +      +  F+  L+R P +   G I+FG       + 
Sbjct: 158 VAGLGHAPISL-------PNQLASHFGLQRQFTTCLSRYPTS--KGAIIFGDAPNNMRQF 208

Query: 158 K---------HTYVPVTKKGYWQFELGDILIGNQSTGV---------CEGGCAAIVDSGT 199
           +          T + +T +G +   +  I I   S                   ++ + T
Sbjct: 209 QNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTST 268

Query: 200 SLLAGPTPVVTEINHAI 216
             +     V        
Sbjct: 269 PHMVLQQSVYQAFTQVF 285

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403

 Score = 50.5 bits (120), Expect = 5e-07
 Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 8/85 (9%)

Query: 330 DCDRIPTMPNVSFTI---GDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWI 386
           + ++I   P+V   +      ++ +S E  +++   G+   C       +          
Sbjct: 306 NSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGV--TC---LGVMNGGMQPRAEIT 360

Query: 387 LGDVFMGVYHTVFDSGKLRIGFAEA 411
           LG   +     VFD  + R+GF+ +
Sbjct: 361 LGARQLEENLVVFDLARSRVGFSTS 385

>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A* Length = 83

 Score = 50.7 bits (121), Expect = 1e-08
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 283 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI 334
           S  C  C+  V    + LK   T+E++L Y+ + CD LP P       C  I
Sbjct: 3   SLPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKP--NMSASCKEI 52

>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A* Length = 83

 Score = 46.1 bits (109), Expect = 6e-07
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 222 VSAECKLVVSQYGDLIWDLLVSGL-LPEKVCQQIGLC 257
           +SA CK +V  Y  +I D++   +  P +VC  + LC
Sbjct: 45  MSASCKEIVDSYLPVILDIIKGEMSRPGEVCSALNLC 81

>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1 Length = 78

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 191 CAAIVDSGTSLLAGPTPVVTEINHAIGGE----GVVSAECKLVVSQYGDLIWDLLVSGLL 246
           C  I+     ++ GP P    +  A         ++   CK ++  +   I   +++G  
Sbjct: 7   CRKIIQKLEDMV-GPQPNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILTGKK 65

Query: 247 PEKVCQQIGLC 257
           P+ +C  I +C
Sbjct: 66  PQAICVDIKIC 76

>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 15/26 (57%), Positives = 19/26 (73%)

Query: 46 GKSCEINYGSGSISGFFSQDNVEVGD 71
          G S +I+YGSGS+SG+ SQD V V  
Sbjct: 71 GTSFDIHYGSGSLSGYLSQDTVSVPC 96

>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413

 Score = 50.3 bits (119), Expect = 6e-07
 Identities = 15/127 (11%), Positives = 37/127 (29%), Gaps = 12/127 (9%)

Query: 287 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTI-- 344
           S  +        +   +             C S  N +          P++P++   +  
Sbjct: 282 SIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNIL-----STRLGPSVPSIDLVLQS 336

Query: 345 GDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKL 404
              ++ ++    ++   + +  VC       D         ++G   +      FD    
Sbjct: 337 ESVVWTITGSNSMVYINDNV--VC---LGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATS 391

Query: 405 RIGFAEA 411
           R+GF+  
Sbjct: 392 RVGFSGT 398

>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381

 Score = 47.8 bits (113), Expect = 3e-06
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 315 ELCDSLPNPMGESIIDCDRIPTMPNVSFT-IGDKIFNLSPEQYILKTGEGIAEVCISGFM 373
            +C                   +PNV     G   + ++ +  ++   +G A V      
Sbjct: 280 GVCYDTKTLGNNLGG-----YAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMK 334

Query: 374 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 409
                  R P  ILG   M  +   FD  K R+GF+
Sbjct: 335 GVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370

>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 29/185 (15%), Positives = 48/185 (25%), Gaps = 27/185 (14%)

Query: 48  SCEINYGSGSIS-GFFSQDNVEVGDVVVKDQVFIEATR-------EGSLTFLLARFDGII 99
           +   N  SG+ + G  S              V                L  L     G+ 
Sbjct: 82  AYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTGVA 141

Query: 100 GLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGG--VDPKHFKG 157
           GL    +           +  Q + S +  +            G  +FGG  V    F  
Sbjct: 142 GLANSGL----------ALPAQ-VASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQFTQ 190

Query: 158 KHTYVPVTKKGYWQF---ELGDILIGNQSTGVCE---GGCAAIVDSGTSLLAGPTPVVTE 211
              Y P+  KG           I++G+    V E        ++ +    +     V   
Sbjct: 191 SMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRP 250

Query: 212 INHAI 216
           +  A 
Sbjct: 251 LMDAF 255

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 57/406 (14%), Positives = 98/406 (24%), Gaps = 146/406 (35%)

Query: 9   VLALPHKISVSYLIPAVPISGFHL-----QSAISLFPAISIRGKSCEINYG--------- 54
           ++     +S +  +       F       +  +  F       +   INY          
Sbjct: 54  IIMSKDAVSGTLRL-------FWTLLSKQEEMVQKF-----VEEVLRINYKFLMSPIKTE 101

Query: 55  ----SGSISGFFSQDNVEVGDVVV--KDQVFIEATREGSLTFL------LARFDGII--G 100
               S     +  Q +    D  V  K  V    +R      L      L     ++  G
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNV----SRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 101 -LGFREIAVGDAVPVWDNMVEQGLVSEEV---FS---FWLNRDPDAEEGGEIVFGGVDPK 153
            LG      G        +     +S +V        FWLN                +  
Sbjct: 158 VLGS-----GKTW-----VALDVCLSYKVQCKMDFKIFWLN------------LKNCN-- 193

Query: 154 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 213
                                  +L   Q           I  + TS     + +   I+
Sbjct: 194 -------------------SPETVLEMLQKL------LYQIDPNWTSRSDHSSNIKLRIH 228

Query: 214 HAIGG-----EGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTG 268
                     +      C LV+      + +         K        AFN        
Sbjct: 229 SIQAELRRLLKSKPYENCLLVL----LNVQN--------AKAWN-----AFNL------S 265

Query: 269 IKTVVEKENVSAGDS-AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP------ 321
            K ++        D  +  +   +++      L   + K  +L Y++     LP      
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 322 NPM-----GESIID-CDRIPTMPNVSF-----TIGDKIFNLSPEQY 356
           NP       ESI D         +V+       I   +  L P +Y
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 40/245 (16%), Positives = 68/245 (27%), Gaps = 84/245 (34%)

Query: 165 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSA 224
            + G  Q++  DIL   +   V    C  + D        P  +++              
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM-------PKSILS------------KE 49

Query: 225 ECKLVVSQYGD------LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENV 278
           E   ++           L W LL      E++ Q+          +V       V + N 
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSK---QEEMVQK----------FVEE-----VLRINY 91

Query: 279 SAGDSAVCSACEMAVVWVQNQLKQ--KQTKEKVLSYINELCDSLPNPMGESIIDCDRIPT 336
                           ++ + +K   +Q       YI +  D L N       D      
Sbjct: 92  K---------------FLMSPIKTEQRQPSMMTRMYIEQR-DRLYN-------DNQVFAK 128

Query: 337 MPNVS-----FTIGDKIFNLSPEQYIL---KTGEG----IAEVCISGFMAFDLPPPRGPL 384
             NVS       +   +  L P + +L     G G      +VC+S              
Sbjct: 129 Y-NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS--YKVQCKMDFKIF 185

Query: 385 WI-LG 388
           W+ L 
Sbjct: 186 WLNLK 190

>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3 Length = 81

 Score = 40.8 bits (95), Expect = 4e-05
 Identities = 9/38 (23%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 220 GVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 257
             ++  CK  +SQY ++   +++  + P+++C  +G C
Sbjct: 43  PGMADICKNYISQYSEIAIQMMMH-MQPKEICALVGFC 79

>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A Length = 99

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 12/50 (24%), Positives = 17/50 (34%)

Query: 208 VVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 257
              E           + EC   V+   D I   L  G  P+ VC ++  C
Sbjct: 49  FDAECKKLFHTIPFGTRECDHYVNSKVDPIIHELEGGTAPKDVCTKLNEC 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	412
1qdm_A	478	Prophytepsin; aspartic proteinases, saposin-like d	100.0
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	100.0
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	100.0
1tzs_A	351	Cathepsin E; hydrolase, aspartic protease, activat	100.0
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	100.0
1htr_B	329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	100.0
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	100.0
1dpj_A	329	Proteinase A; proteinase A, hydrolase-hydrolase in	100.0
4aa9_A	320	Chymosin; hydrolase, aspartic peptidase, rennet; H	100.0
1am5_A	324	Pepsin, acid proteinase; aspartyl protease, hydrol	100.0
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	100.0
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	100.0
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	100.0
1mpp_A	361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	100.0
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	100.0
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	100.0
2apr_A	325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	100.0
1oew_A	329	Endothiapepsin; hydrolase, aspartic proteinase mec	100.0
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	100.0
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	100.0
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	100.0
3fv3_A	339	SAPP1P-secreted aspartic protease 1; secreted aspa	100.0
2qzx_A	342	Candidapepsin-5; aspartic proteinase, aspartyl pro	100.0
3pvk_A	342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	100.0
1j71_A	334	Candidapepsin, aspartic proteinase; candida tropic	100.0
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	100.0
2ewy_A	383	Beta-secretase 2; BACE2, aspartic protease, hydrol	100.0
3vf3_A	402	Beta-secretase 1; structure-based drug design, hyd	100.0
3lpj_A	455	Beta-secretase 1; alzheimer'S, aspartyl protease,	100.0
2qp8_A	395	Beta-secretase 1; BACE1, protease, alternative spl	100.0
1lya_B	241	Cathepsin D; lysosomal aspartic protease; HET: NAG	100.0
3aup_A	403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	100.0
3vla_A	413	EDGP; extracellular, inhibitor, plant protein; HET	100.0
1t6e_X	381	Xylanase inhibitor; two beta-barrel domain structu	100.0
1b5f_A	239	Protein (cardosin A); hydrolase, aspartic proteina	100.0
1b5f_B	87	Protein (cardosin A); hydrolase, aspartic proteina	99.82
3rfi_A	108	Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuber	99.8
1lya_A	97	Cathepsin D; lysosomal aspartic protease; HET: NAG	99.4
4ddj_A	83	Saposin-A, protein A; saposin fold, sphingolipid a	97.75
2qyp_A	91	Proactivator polypeptide; saposin, activator prote	97.72
3bqp_A	80	Proactivator polypeptide; saposin, sphingolipid ac	97.68
1l9l_A	74	Granulysin; saposin fold, membrane-lytic, antimicr	97.63
2gtg_A	83	Proactivator polypeptide; saposin, sphingolipid ac	97.61
1of9_A	77	Pore-forming peptide ameobapore A; toxin, saplip,	97.53
2qyp_A	91	Proactivator polypeptide; saposin, activator prote	97.53
1nkl_A	78	NK-lysin; saposin fold, antibacterial peptide, tum	97.44
3bqp_A	80	Proactivator polypeptide; saposin, sphingolipid ac	97.44
1n69_A	81	Saposin B; lipid binding protein, glycosphingolipi	97.32
1n69_A	81	Saposin B; lipid binding protein, glycosphingolipi	97.25
2gtg_A	83	Proactivator polypeptide; saposin, sphingolipid ac	97.19
1nkl_A	78	NK-lysin; saposin fold, antibacterial peptide, tum	97.14
2js9_A	99	Saposin-like protein family protein 5; caenopore-5	97.08
2js9_A	99	Saposin-like protein family protein 5; caenopore-5	97.07
1of9_A	77	Pore-forming peptide ameobapore A; toxin, saplip,	97.05
4ddj_A	83	Saposin-A, protein A; saposin fold, sphingolipid a	96.73
1l9l_A	74	Granulysin; saposin fold, membrane-lytic, antimicr	96.32
3s64_A	87	AC-SLP-1, saposin-like protein 1; lipid-binding, l	94.83
3s64_A	87	AC-SLP-1, saposin-like protein 1; lipid-binding, l	81.39

>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2

Probab=100.00  E-value=3.6e-77  Score=622.28  Aligned_cols=411  Identities=60%  Similarity=1.084  Sum_probs=359.1

Q ss_pred             cccccceeeecCccCccceEEecC-C----CCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV-P----ISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKD   76 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~-~----~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~   76 (412)
                      +|||+|.+.+..||||+++|||+. +    .|..|+.|+|++|+|++..+++|++.|++|++.|++++|+|++++..+.+
T Consensus        60 IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~ig~~~v~~  139 (478)
T 1qdm_A           60 VGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGSIAGYFSEDSVTVGDLVVKD  139 (478)
T ss_dssp             ETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGSCCBCGGGCTTCBCCCCEEEEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred             ECCCCeEEEEEEcCCCcceEEecCCCCCCccccCCCCCCcccCCCeeeCCcEEEEEcCCCCeEEEEEEEEEEECCeEECC
Confidence            689999999999999999999986 2    58889999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCee
Q 015145           77 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFK  156 (412)
Q Consensus        77 ~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~  156 (412)
                      +.||++....+..|....++||||||++.++.....|++++|++||+|.+++||+||++..+...+|.|+|||+|+++|.
T Consensus       140 ~~Fg~a~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~  219 (478)
T 1qdm_A          140 QEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYV  219 (478)
T ss_dssp             EEEEEEEECCBSHHHHCSSSEEEECSCGGGCGGGCCCHHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTTSEE
T ss_pred             EEEEEEEecCCcccccccccceecccccccccCCCCcHHHHHHHCCCCCCCEEEEEeecCCCCCCCeEEEeCCcCHhhcC
Confidence            99999998766556667889999999998887677889999999999999999999998754445899999999999999


Q ss_pred             cCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhh
Q 015145          157 GKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDL  236 (412)
Q Consensus       157 g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  236 (412)
                      |++.|+|+.+.++|.|.+++|.++++.+.++.....++|||||+++++|.+++++|.+++++.++++.+||.++++|++.
T Consensus       220 G~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~  299 (478)
T 1qdm_A          220 GEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQ  299 (478)
T ss_dssp             EEEEEEEEEEETTEEEEECCEEETTEECSTTTTCEEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHH
T ss_pred             CCceEEeccCCCeEEEEEeEEEECCEEEeecCCCceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhH
Confidence            99999999999999999999999999876666778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCccchhhcccccccCCcceeccceeeeeecccc---ccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHh
Q 015145          237 IWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENV---SAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYI  313 (412)
Q Consensus       237 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~  313 (412)
                      ||++|.++..|+++|.+.|+|..++.+..++.+..+.+|++.   ...++..|++|||+|.|++++|++|+|+++|++++
T Consensus       300 ii~~l~~~~~p~~vC~~iglC~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~  379 (478)
T 1qdm_A          300 ILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYV  379 (478)
T ss_dssp             HHHHHHTTCCHHHHHHHTTCC---------------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHhhhhccChhhhhccccccccCccccccccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            999999999999999999999999988888888887777543   45678899999999999999999999999999999


Q ss_pred             hhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEcccccc
Q 015145          314 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMG  393 (412)
Q Consensus       314 ~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~  393 (412)
                      +++|.+++...|.|.++|+.+..+|+|+|+|+|+.|+|+|++|+++..++....|+++|...+.+++.++.||||++|||
T Consensus       380 ~~~C~~~~~~~g~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~  459 (478)
T 1qdm_A          380 NQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMG  459 (478)
T ss_dssp             HHHTTCBCCSSSCCEECGGGGTTCCCEEEEETTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHT
T ss_pred             HHHhhccCCCCCeEEeecccccccccEEEEECCEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEECHHHhc
Confidence            99999999999999999998889999999999999999999999987655466899999988766556789999999999


Q ss_pred             ceEEEEeCCCCeEEEEecC
Q 015145          394 VYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       394 ~~yvvfD~e~~rIGfa~~~  412 (412)
                      ++|+|||++++|||||+++
T Consensus       460 ~~y~vfD~~~~rIGfA~a~  478 (478)
T 1qdm_A          460 PYHTVFDYGKLRIGFAKAA  478 (478)
T ss_dssp             TEEEEEETTTTEEEEEEEC
T ss_pred             cEEEEEECCCCEEEEEeCC
Confidence            9999999999999999986

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}

Probab=100.00  E-value=1.6e-58  Score=469.39  Aligned_cols=307  Identities=35%  Similarity=0.714  Sum_probs=276.9

Q ss_pred             cccccceeeecCccCccceEEecC-C-----CCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEe
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV-P-----ISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVK   75 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~-~-----~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~   75 (412)
                      +|||+|.+.+..||||+++|||+. +     .|..|+.|+|++|+|++..++.|.++|++|++.|++++|+|++++..++
T Consensus        69 IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~ig~~~v~  148 (383)
T 2x0b_A           69 IGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT  148 (383)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEEETTEEEE
T ss_pred             ECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCCCCCCCCCCCcEEECCcEEEEEcCCccEEEEEEeeEEEEcCceEE
Confidence            689999999999999999999986 2     5778999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCC--CCcEEEeCCCCCC
Q 015145           76 DQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAE--EGGEIVFGGVDPK  153 (412)
Q Consensus        76 ~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~--~~G~l~fGg~D~~  153 (412)
                       +.||++..+.+..|....+|||||||++.++..+..|++++|++||+|.+++||+||++..+..  .+|+|+|||+|++
T Consensus       149 -~~Fg~a~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~  227 (383)
T 2x0b_A          149 -QMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQ  227 (383)
T ss_dssp             -EEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGG
T ss_pred             -EEEEEEEecCCcccccCCCceEeccCCCccccCCCCcHHHHHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChH
Confidence             9999999876666777788999999999988777889999999999999999999999874321  4899999999999


Q ss_pred             CeecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhc
Q 015145          154 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQY  233 (412)
Q Consensus       154 ~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~  233 (412)
                      +|+|+++|+|+.+..+|.|.+++|.++++.+. +..+..++|||||+++++|.+++++|.+++++.              
T Consensus       228 ~y~G~l~~~pv~~~~~w~v~l~~i~v~~~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~--------------  292 (383)
T 2x0b_A          228 HYEGNFHYINLIKTGVWQIQMKGVSVGSSTLL-CEDGCLALVDTGASYISGSTSSIEKLMEALGAK--------------  292 (383)
T ss_dssp             GEEEEEEEEEBSSTTSCEEEECEEEESSCCCB-STTCEEEEECTTCSSEEECHHHHHHHHHHHTCE--------------
T ss_pred             HcCCceEEEEcCCCceEEEEEeEEEeCCceEE-cCCCcEEEEcCCCceEEcCHHHHHHHHHHhCCc--------------
Confidence            99999999999999999999999999998753 567789999999999999999999999999765              


Q ss_pred             hhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHh
Q 015145          234 GDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYI  313 (412)
Q Consensus       234 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~  313 (412)
                                                                                                      
T Consensus       293 --------------------------------------------------------------------------------  292 (383)
T 2x0b_A          293 --------------------------------------------------------------------------------  292 (383)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEcccccc
Q 015145          314 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMG  393 (412)
Q Consensus       314 ~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~  393 (412)
                             + ..+.|.++|+.++.+|+|+|.|+|++|+|+|++|+++....+...|+++|+..+.+++.++.||||++|||
T Consensus       293 -------~-~~g~~~v~C~~~~~~P~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~  364 (383)
T 2x0b_A          293 -------K-RLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIR  364 (383)
T ss_dssp             -------E-CSSCEEEEGGGTTTCCCEEEEETTEEEEECHHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHT
T ss_pred             -------c-cCCcEEEeccccccCceEEEEECCEEEEECHHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhc
Confidence                   1 24578999998889999999999999999999999986544456899999987765445679999999999


Q ss_pred             ceEEEEeCCCCeEEEEecC
Q 015145          394 VYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       394 ~~yvvfD~e~~rIGfa~~~  412 (412)
                      ++|+|||++++|||||+++
T Consensus       365 ~~y~vfD~~~~rIGfA~a~  383 (383)
T 2x0b_A          365 KFYTEFDRRNNRIGFALAR  383 (383)
T ss_dssp             TEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEEECCCCEEeEEEcC
Confidence            9999999999999999986

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A

Probab=100.00  E-value=3.1e-58  Score=464.83  Aligned_cols=303  Identities=37%  Similarity=0.704  Sum_probs=273.6

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+.+..||||+++|||+.    ..|..|+.|+|++|+|++..++.|.+.|++|++.|.+++|+|++++..+.++
T Consensus        64 iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~ig~~~v~~~  143 (370)
T 3psg_A           64 IGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQ  143 (370)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEE
T ss_pred             EcCCCCEEEEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEECCcEEEEEeCCceEEEEEEEEEEeeCCcccCCe
Confidence            689999999999999999999986    4688999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145           78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG  157 (412)
Q Consensus        78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g  157 (412)
                      .||++....+..|....++||||||++.++..+..+++++|++||+|.+++||+||++..  ..+|.|+|||+|+++|.|
T Consensus       144 ~Fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~~~G~l~fGg~D~~~y~g  221 (370)
T 3psg_A          144 IFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSND--DSGSVVLLGGIDSSYYTG  221 (370)
T ss_dssp             EEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-------CEEEEETCCCGGGBSS
T ss_pred             EEEEEEeecccccccCCccceeccCCccccccCCCCHHHHHHHCCCCCCCEEEEEEccCC--CCCeEEEEEeeChHhcCC
Confidence            999999887666777889999999999988777889999999999999999999999862  348999999999999999


Q ss_pred             CceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhH
Q 015145          158 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLI  237 (412)
Q Consensus       158 ~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  237 (412)
                      ++.|+|+.+..+|.|.+++|+++++.+. +.....++|||||+++++|.+++++|.+++++..                 
T Consensus       222 ~l~~~pv~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~-----------------  283 (370)
T 3psg_A          222 SLNWVPVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASE-----------------  283 (370)
T ss_dssp             CCEEEECSEETTEEEEECEEESSSSEEE-CTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEE-----------------
T ss_pred             cceeecccccceeEEEEeEEEECCEEEe-cCCCceEEEcCCCCcEECCHHHHHHHHHHhCCcc-----------------
Confidence            9999999999999999999999998874 5577899999999999999999999999997651                 


Q ss_pred             HHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhc
Q 015145          238 WDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELC  317 (412)
Q Consensus       238 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c  317 (412)
                                                                                                      
T Consensus       284 --------------------------------------------------------------------------------  283 (370)
T 3psg_A          284 --------------------------------------------------------------------------------  283 (370)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEE
Q 015145          318 DSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHT  397 (412)
Q Consensus       318 ~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yv  397 (412)
                          ...+.|.++|+....+|+|+|+|+|++++|+|++|+++ .   .+.|+++|+..+.+...++.||||++|||++|+
T Consensus       284 ----~~~g~~~v~C~~~~~lP~i~f~~~g~~~~l~~~~yi~~-~---~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~  355 (370)
T 3psg_A          284 ----NSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQ-D---DDSCTSGFEGMDVPTSSGELWILGDVFIRQYYT  355 (370)
T ss_dssp             ----CTTCCEECCGGGGGGCCCEEEEETTEEEEECHHHHEEE-C---SSCEEESEEEECCCTTSCCEEEECHHHHTTEEE
T ss_pred             ----cCCCcEEEECCCcccCCcEEEEECCEEEEECHHHhccc-C---CCEEEEEEEeCCCCCCCCCcEEeChHHhcceEE
Confidence                23567999999888999999999999999999999998 2   247999999877544445689999999999999


Q ss_pred             EEeCCCCeEEEEecC
Q 015145          398 VFDSGKLRIGFAEAA  412 (412)
Q Consensus       398 vfD~e~~rIGfa~~~  412 (412)
                      |||++++|||||+||
T Consensus       356 vfD~~~~riGfA~a~  370 (370)
T 3psg_A          356 VFDRANNKVGLAPVA  370 (370)
T ss_dssp             EEETTTTEEEEEEBC
T ss_pred             EEECCCCEEEEEEcC
Confidence            999999999999986

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}

Probab=100.00  E-value=2.3e-56  Score=447.17  Aligned_cols=308  Identities=40%  Similarity=0.729  Sum_probs=272.3

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+.+..||||+++||++.    ..|..|+.|+|++|+|++..++.|.+.|++|++.|.+++|+|++++..+.++
T Consensus        31 iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ig~~~~~~~  110 (351)
T 1tzs_A           31 IGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGSLSGIIGADQVSVEGLTVVGQ  110 (351)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCBCCSCEEEEESSSCEEEEEEEEEEEEETTEEEEEE
T ss_pred             ECCCCeEEEEEEeCCCcceEEecCCCCccccCCCCcCCcccCcceEECCCEEEEEeCCCCeEEEEEEeEEEECCeEECCe
Confidence            689999999999999999999986    2688899999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145           78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG  157 (412)
Q Consensus        78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g  157 (412)
                      .||++....+..|....++||||||++.++.....+++++|++||+|.+++||+||.+..+....|.|+|||+|+++++|
T Consensus       111 ~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g  190 (351)
T 1tzs_A          111 QFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSG  190 (351)
T ss_dssp             EEEEECSCCCGGGGGCSCSEEEECSCGGGSGGGCCCHHHHHHHTTCCSSSEEEEECCCCC--CTTCEEEETSCCGGGBCS
T ss_pred             EEEEEEeccccccccCCCceEEecCCccccccCCCcHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEECCCCHHHcCC
Confidence            99999987665566678899999999988776778899999999999999999999987544458999999999999999


Q ss_pred             CceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhH
Q 015145          158 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLI  237 (412)
Q Consensus       158 ~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  237 (412)
                      ++.|+|+.+..+|.|.+++|+++++.+. +.....++|||||+++++|.+++++|.+++++..                 
T Consensus       191 ~l~~~p~~~~~~~~v~l~~i~v~~~~~~-~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~-----------------  252 (351)
T 1tzs_A          191 SLNWVPVTKQAYWQIALDNIQVGGTVMF-CSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAP-----------------  252 (351)
T ss_dssp             CCEEEECSEETTEEEEEEEEEETTEEEE-CTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-----------------
T ss_pred             ceEEEecCCCceEEEEeCEEEECCceEE-cCCCceEEeccCCcceeCCHHHHHHHHHHhCCcc-----------------
Confidence            9999999999999999999999998853 4567889999999999999999999999996641                 


Q ss_pred             HHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhc
Q 015145          238 WDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELC  317 (412)
Q Consensus       238 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c  317 (412)
                                                                                                      
T Consensus       253 --------------------------------------------------------------------------------  252 (351)
T 1tzs_A          253 --------------------------------------------------------------------------------  252 (351)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEE
Q 015145          318 DSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHT  397 (412)
Q Consensus       318 ~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yv  397 (412)
                          .. +.|.++|+....+|+|+|.|+|++++|+|++|+++....+...|+++|+..+.+....+.||||++|||++|+
T Consensus       253 ----~~-g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~  327 (351)
T 1tzs_A          253 ----VD-GEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYS  327 (351)
T ss_dssp             ----CS-SSEEECGGGGGGSCCEEEEETTEEEEECTTTSEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEEE
T ss_pred             ----cC-CeEEEeCCCCccCCcEEEEECCEEEEECHHHhEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEE
Confidence                12 5788999988889999999999999999999999765434568999998876543456789999999999999


Q ss_pred             EEeCCCCeEEEEecC
Q 015145          398 VFDSGKLRIGFAEAA  412 (412)
Q Consensus       398 vfD~e~~rIGfa~~~  412 (412)
                      |||++++|||||+++
T Consensus       328 vfD~~~~rigfA~~~  342 (351)
T 1tzs_A          328 VFDRGNNRVGLAPAV  342 (351)
T ss_dssp             EEETTTTEEEEEEBC
T ss_pred             EEECCCCEEEEEECC
Confidence            999999999999985

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...

Probab=100.00  E-value=4.7e-56  Score=441.74  Aligned_cols=307  Identities=35%  Similarity=0.715  Sum_probs=273.5

Q ss_pred             cccccceeeecCccCccceEEecCC------CCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEe
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVP------ISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVK   75 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~------~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~   75 (412)
                      +|||+|.+....||||+++||++..      .|..|+.|+|++|+|++..++.|.+.|++|++.|.+++|+|++++..+ 
T Consensus        26 iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G~~~~D~v~ig~~~v-  104 (341)
T 3k1w_A           26 IGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-  104 (341)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEEEEEEETTEEE-
T ss_pred             EcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCCCCCCCCcCcCeeECCCEEEEEECCcEEEEEEEEEEEEECCcee-
Confidence            6899999999999999999999862      467889999999999999999999999999999999999999999999 


Q ss_pred             eeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCC--CCCCCcEEEeCCCCCC
Q 015145           76 DQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDP--DAEEGGEIVFGGVDPK  153 (412)
Q Consensus        76 ~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~--~~~~~G~l~fGg~D~~  153 (412)
                      ++.||++....+..+....++||||||++..+.....+++++|++||+|.+++||+||.+..  +....|.|+|||+|++
T Consensus       105 ~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~  184 (341)
T 3k1w_A          105 TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQ  184 (341)
T ss_dssp             EEEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHHHTCBSSSEEEEEECCCC-----CCEEEEESSCCGG
T ss_pred             eEEEEEEEEccccccccCCcceEEECCchhhcccCCCCHHHHHHHCCCCCCCEEEEEEeCCCCcCCCCCCEEEECccChH
Confidence            99999999876544667778999999999888777889999999999999999999999875  2234899999999999


Q ss_pred             CeecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhc
Q 015145          154 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQY  233 (412)
Q Consensus       154 ~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~  233 (412)
                      ++.|+++|+|+.+..+|.|.+++|.+++..+. +.....++|||||+++++|.+++++|.+++++..             
T Consensus       185 ~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~-------------  250 (341)
T 3k1w_A          185 HYEGNFHYINLIKTGVWQIQMKGVSVGSSTLL-CEDGCLALVDTGASYISGSTSSIEKLMEALGAKK-------------  250 (341)
T ss_dssp             GEEEEEEEEECSSTTSCEEEECCEEETTEEEE-CTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-------------
T ss_pred             HccCceEEEecCCCCEEEEEEeEEEECCEEee-cCCCCEEEEECCCChhcCCHHHHHHHHHHcCCee-------------
Confidence            99999999999999999999999999998753 4567899999999999999999999999997651             


Q ss_pred             hhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHh
Q 015145          234 GDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYI  313 (412)
Q Consensus       234 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~  313 (412)
                                                                                                      
T Consensus       251 --------------------------------------------------------------------------------  250 (341)
T 3k1w_A          251 --------------------------------------------------------------------------------  250 (341)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEcccccc
Q 015145          314 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMG  393 (412)
Q Consensus       314 ~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~  393 (412)
                              ...| |.+||+....+|+|+|+|+|++++|+|++|+++....+...|++.|...+.+....+.||||++|||
T Consensus       251 --------~~~g-~~~~C~~~~~~p~i~f~f~g~~~~l~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~  321 (341)
T 3k1w_A          251 --------RLFD-YVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIR  321 (341)
T ss_dssp             --------CSSC-EEEEGGGGGGCCCEEEEETTEEEEECHHHHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHT
T ss_pred             --------cCCC-eEEeCCCCCcCCcEEEEECCEEEEECHHHheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhc
Confidence                    1234 9999998888999999999999999999999986554567899999987654445679999999999


Q ss_pred             ceEEEEeCCCCeEEEEecC
Q 015145          394 VYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       394 ~~yvvfD~e~~rIGfa~~~  412 (412)
                      ++|+|||++++|||||+++
T Consensus       322 ~~y~vfD~~~~~igfA~a~  340 (341)
T 3k1w_A          322 KFYTEFDRRNNRIGFALAR  340 (341)
T ss_dssp             TEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEEeCCCCEEEEEECC
Confidence            9999999999999999986

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A

Probab=100.00  E-value=6.5e-56  Score=439.68  Aligned_cols=305  Identities=36%  Similarity=0.673  Sum_probs=272.0

Q ss_pred             cccccceeeecCccCccceEEecC-C---CCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV-P---ISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~-~---~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+.+..||||+++||++. +   .|..|+.|+|++|+|++..++.|+++|++|++.|.+++|+|++++..+.++
T Consensus        20 iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G~~~~D~v~~g~~~~~~~   99 (329)
T 1htr_B           20 IGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYSTNGQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQ   99 (329)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred             ECCCCcEEEEEEcCCCccEEEecCCCCCcccCCCCcCCCccCCCeEECCcEEEEEeCCCCeEEEEEeeeEEEcceEECce
Confidence            689999999999999999999986 2   477889999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145           78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG  157 (412)
Q Consensus        78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g  157 (412)
                      .||++....+..+....++||||||++..+.....+++++|++||+|.+++||+||.+... ...|.|+|||+|+++++|
T Consensus       100 ~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~L~~~~~-~~~G~l~fGg~d~~~~~g  178 (329)
T 1htr_B          100 EFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQG-SSGGAVVFGGVDSSLYTG  178 (329)
T ss_dssp             EEEEESSCSSGGGGGCSCCEEEECCCCSCCCTTCCSHHHHHHHTTCSSSSEEEEEECSSCS-SEEEEEEESSCCGGGEEE
T ss_pred             EEEEEEEccccccccCCCceEEecCCCcccccCCCCHHHHHHhcCCCCCCEEEEEEcCCCC-CCCcEEEEcccCHHHcCC
Confidence            9999998766556667889999999998887778889999999999999999999988742 237999999999999999


Q ss_pred             CceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhH
Q 015145          158 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLI  237 (412)
Q Consensus       158 ~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  237 (412)
                      ++.|+|+.+..+|.|.+++|+++++.+..+.....++|||||+++++|++++++|.+++++..                 
T Consensus       179 ~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~-----------------  241 (329)
T 1htr_B          179 QIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQE-----------------  241 (329)
T ss_dssp             EEEEEEBCSSSSCEEEECEEEETTEECCTTTTCEEEEECTTCCSEEEEGGGHHHHHHHHTCEE-----------------
T ss_pred             ceEEEECCCCceEEEEEeEEEECCceeeecCCCceEEEecCCccEECCHHHHHHHHHHhCCee-----------------
Confidence            999999999999999999999999886434567899999999999999999999999997641                 


Q ss_pred             HHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhc
Q 015145          238 WDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELC  317 (412)
Q Consensus       238 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c  317 (412)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (329)
T 1htr_B          242 --------------------------------------------------------------------------------  241 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCC-cEEEccccccceE
Q 015145          318 DSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGP-LWILGDVFMGVYH  396 (412)
Q Consensus       318 ~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~-~~iLG~~fl~~~y  396 (412)
                          ...+.|.++|+....+|+|+|+|+|++++|+|++|+++..    +.|+++|+..+.+.+.++ .||||++|||++|
T Consensus       242 ----~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~----g~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~y  313 (329)
T 1htr_B          242 ----DEYGQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILSNN----GYCTVGVEPTYLSSQNGQPLWILGDVFLRSYY  313 (329)
T ss_dssp             ----CTTSCEEECGGGGGGSCCEEEEETTEEEEECHHHHEEECS----SCEEESEEEECCCCTTSSCEEEECHHHHTTEE
T ss_pred             ----cCCCeEEEeCCCcccCCcEEEEECCEEEEECHHHhcccCC----CEEEEEEEECCCCCCCCCceEEEChHHhccEE
Confidence                1235688999988889999999999999999999999854    389999987764433456 8999999999999


Q ss_pred             EEEeCCCCeEEEEecC
Q 015145          397 TVFDSGKLRIGFAEAA  412 (412)
Q Consensus       397 vvfD~e~~rIGfa~~~  412 (412)
                      +|||++++|||||+++
T Consensus       314 vvfD~~~~~igfa~~~  329 (329)
T 1htr_B          314 SVYDLGNNRVGFATAA  329 (329)
T ss_dssp             EEEETTTTEEEEEEEC
T ss_pred             EEEECCCCEEEEEeCC
Confidence            9999999999999986

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A

Probab=100.00  E-value=1e-55  Score=437.54  Aligned_cols=298  Identities=35%  Similarity=0.638  Sum_probs=267.0

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+.+..||||+++||++.    ..|..|+.|+|++|+|++..++.|.+.|++|++.|.+++|+|++++.++.++
T Consensus        22 iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ig~~~~~~~  101 (323)
T 3cms_A           22 LGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQ  101 (323)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred             ECCCCeEEEEEEeCCccceEEcCCCCCcccccCCCCCCCccCCCeEECCcEEEEEeCCCCeEEEEEEEEEEECCeEEecc
Confidence            689999999999999999999986    2477889999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145           78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG  157 (412)
Q Consensus        78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g  157 (412)
                      .||++....+..|....++||||||++.++.....+++++|++||+|.+++||+||.+...   .|.|+|||+|++++.|
T Consensus       102 ~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~q~~i~~~~FS~~l~~~~~---~G~l~fGg~d~~~~~g  178 (323)
T 3cms_A          102 TVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQ---ESMLTLGAIDPSYYTG  178 (323)
T ss_dssp             EEEEEEECCSHHHHHSSCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCTTSS---CEEEEESCCCGGGEEE
T ss_pred             EEEEEEecccccccccCCceEEecCcchhhccCCCCHHHHHHHCCCCCCCEEEEEECCCCC---CEEEEECCCChhhccC
Confidence            9999998765455556789999999998887778899999999999999999999988643   4999999999999999


Q ss_pred             CceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhH
Q 015145          158 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLI  237 (412)
Q Consensus       158 ~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  237 (412)
                      ++.|+|+.+..+|.|.+++|.++++.+. +.....++|||||+++++|.+++++|.+++++..                 
T Consensus       179 ~l~~~p~~~~~~~~v~l~~i~v~~~~~~-~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~-----------------  240 (323)
T 3cms_A          179 SLHWVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQ-----------------  240 (323)
T ss_dssp             EEEEEECSSBTTBEEEEEEEEETTEEEE-STTCEEEEECTTCCSEEECHHHHHHHHHHHTCEE-----------------
T ss_pred             ceEEEECccCCeEEEEEeeEEECCEEee-cCCCcEEEEecCCccEeCCHHHHHHHHHHhCCee-----------------
Confidence            9999999999999999999999998874 3467889999999999999999999999996541                 


Q ss_pred             HHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhc
Q 015145          238 WDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELC  317 (412)
Q Consensus       238 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c  317 (412)
                                                                                                      
T Consensus       241 --------------------------------------------------------------------------------  240 (323)
T 3cms_A          241 --------------------------------------------------------------------------------  240 (323)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEE
Q 015145          318 DSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHT  397 (412)
Q Consensus       318 ~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yv  397 (412)
                          ...+.|.++|+....+|+|+|+|+|++++|+|++|+++    ....|+++|+..+    ..+.||||++|||++|+
T Consensus       241 ----~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~----~~~~C~~~i~~~~----~~~~~iLG~~fl~~~y~  308 (323)
T 3cms_A          241 ----NQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQ----DQGFCTSGFQSEN----HSQKWILGDVFIREYYS  308 (323)
T ss_dssp             ----ETTTEEEECTTCTTTSCCEEEEETTEEEEECHHHHEEE----ETTEEEESEEEC-------CCEEECHHHHTTEEE
T ss_pred             ----cCCCcEEEECCCCccCceEEEEECCEEEEECHHHhccC----CCCEEEEEEEeCC----CCCcEEECHHHhhceEE
Confidence                12357889999888999999999999999999999998    3458999898653    34689999999999999


Q ss_pred             EEeCCCCeEEEEecC
Q 015145          398 VFDSGKLRIGFAEAA  412 (412)
Q Consensus       398 vfD~e~~rIGfa~~~  412 (412)
                      |||++++|||||+++
T Consensus       309 vfD~~~~~igfA~~~  323 (323)
T 3cms_A          309 VFDRANNLVGLAKAI  323 (323)
T ss_dssp             EEETTTTEEEEEEEC
T ss_pred             EEECCCCEEEEEECC
Confidence            999999999999986

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*

Probab=100.00  E-value=1.1e-55  Score=438.14  Aligned_cols=304  Identities=34%  Similarity=0.640  Sum_probs=270.4

Q ss_pred             cccccceeeecCccCccceEEecCC----CCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVP----ISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~----~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+.+..||||+++||++..    .|..|+.|+|++|+|++..++.|.+.|++|++.|.+++|+|++++..+.++
T Consensus        21 iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ig~~~~~~~  100 (329)
T 1dpj_A           21 LGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQ  100 (329)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred             ECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCcCcCCcccCcCeEECCcEEEEEECCceEEEEEEEEEEEECCeEECCe
Confidence            6899999999999999999999862    377789999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCC-CCCCcEEEeCCCCCCCee
Q 015145           78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPD-AEEGGEIVFGGVDPKHFK  156 (412)
Q Consensus        78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~-~~~~G~l~fGg~D~~~~~  156 (412)
                      .||++....+..|....++||||||++..+..+..+++++|++||+|.+++||+||.+... ....|.|+|||+|+++++
T Consensus       101 ~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~G~l~fGg~d~~~~~  180 (329)
T 1dpj_A          101 DFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFK  180 (329)
T ss_dssp             EEEEEEECCHHHHTTCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEE
T ss_pred             EEEEEEecCccccccCCcceEEEeCCchhhccCCCCHHHHHHhcCCcCCCEEEEEecCCCCCCCCCcEEEEcCCChhhcC
Confidence            9999998755445566789999999998876677889999999999999999999987532 234799999999999999


Q ss_pred             cCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhh
Q 015145          157 GKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDL  236 (412)
Q Consensus       157 g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  236 (412)
                      |++.|+|+.+..+|.|.+++|+++++.+.  ..+..++|||||+++++|.+++++|.+++++.                 
T Consensus       181 g~l~~~p~~~~~~~~v~l~~i~v~~~~~~--~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~-----------------  241 (329)
T 1dpj_A          181 GDITWLPVRRKAYWEVKFEGIGLGDEYAE--LESHGAAIDTGTSLITLPSGLAEMINAEIGAK-----------------  241 (329)
T ss_dssp             EEEEEEECSSBTTBEEEEEEEEETTEEEE--CSSCEEEECTTCSCEEECHHHHHHHHHHHTCE-----------------
T ss_pred             CceEEEEcCCCceEEEEeeeEEECCeEec--CCCccEEeeCCCCcEECCHHHHHHHHHHhCCc-----------------
Confidence            99999999999999999999999998874  35678999999999999999999999999654                 


Q ss_pred             HHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhh
Q 015145          237 IWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINEL  316 (412)
Q Consensus       237 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~  316 (412)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (329)
T 1dpj_A          242 --------------------------------------------------------------------------------  241 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceE
Q 015145          317 CDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH  396 (412)
Q Consensus       317 c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y  396 (412)
                          ....+.|.++|+....+|+|+|+|+|++++|+|++|+++..    ..|++.|...+.+...++.||||++|||++|
T Consensus       242 ----~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~----~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y  313 (329)
T 1dpj_A          242 ----KGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVS----GSCISAITPMDFPEPVGPLAIVGDAFLRKYY  313 (329)
T ss_dssp             ----ECTTSSEEECGGGGGGCCCEEEEETTEEEEECTTTSEEEET----TEEEECEEECCCCTTTCSEEEECHHHHTTEE
T ss_pred             ----cCCCCeEEEECCCCCcCCcEEEEECCEEEEECHHHhEecCC----CEEEEEEEecccCCCCCCcEEEChHHhcceE
Confidence                02346789999988889999999999999999999999753    4899999887654345679999999999999


Q ss_pred             EEEeCCCCeEEEEecC
Q 015145          397 TVFDSGKLRIGFAEAA  412 (412)
Q Consensus       397 vvfD~e~~rIGfa~~~  412 (412)
                      +|||++++|||||+++
T Consensus       314 ~vfD~~~~~igfA~~~  329 (329)
T 1dpj_A          314 SIYDLGNNAVGLAKAI  329 (329)
T ss_dssp             EEEETTTTEEEEEEEC
T ss_pred             EEEECCCCEEEEEECC
Confidence            9999999999999986

>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A

Probab=100.00  E-value=8.8e-56  Score=436.46  Aligned_cols=298  Identities=35%  Similarity=0.645  Sum_probs=268.9

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+....||||+++||++.    ..|..|+.|+|++|+|++..++.|.+.|++|++.|.+++|+|++++..+.++
T Consensus        19 iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G~~~~D~v~ig~~~v~~~   98 (320)
T 4aa9_A           19 IGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLGKPLSIHYGTGSMEGFLGYDTVTVSNIVDPNQ   98 (320)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred             ECCCCeEEEEEEeCCCCceEEcCCCCCccccCCCCCCCCCCCcCeEcCCcEEEEEECCcEEEEEEEEEEEEECCEeecCe
Confidence            689999999999999999999986    2577889999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145           78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG  157 (412)
Q Consensus        78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g  157 (412)
                      .||++....+..+....++||||||++..+.....+++++|++||+|.+++||+||.+.   ...|.|+|||+|++++.|
T Consensus        99 ~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~Fs~~l~~~---~~~G~l~fGg~d~~~~~g  175 (320)
T 4aa9_A           99 TVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRN---GQGSMLTLGAIDPSYYTG  175 (320)
T ss_dssp             EEEEEEECCSHHHHSCCCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCSS---SSCCEEEETCCCGGGEEE
T ss_pred             EEEEEEEcccccccccCcccEEecCcccccccCCCCHHHHHHhCCCCCCceEEEEeCCC---CCCeEEEEcccCHHHccC
Confidence            99999987665566677899999999988877788999999999999999999999985   248999999999999999


Q ss_pred             CceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhH
Q 015145          158 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLI  237 (412)
Q Consensus       158 ~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  237 (412)
                      ++.|+|+.+..+|.|.+++|.++++.+. +.....++|||||+++++|.+++++|.+++++..                 
T Consensus       176 ~l~~~p~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~-----------------  237 (320)
T 4aa9_A          176 SLHWVPVTLQQYWQFTVDSVTINGVAVA-CVGGCQAILDTGTSVLFGPSSDILKIQMAIGATE-----------------  237 (320)
T ss_dssp             EEEEEECSSBTTBEEEECEEEETTEEEE-STTCEEEEECTTCSSEEEEHHHHHHHHHHTTCEE-----------------
T ss_pred             ceEEEEcccCCceEEEEeEEEECCEEec-cCCCcEEEEECCCCcEECCHHHHHHHHHHhCCcc-----------------
Confidence            9999999999999999999999998875 3457889999999999999999999999996541                 


Q ss_pred             HHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhc
Q 015145          238 WDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELC  317 (412)
Q Consensus       238 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c  317 (412)
                                                                                                      
T Consensus       238 --------------------------------------------------------------------------------  237 (320)
T 4aa9_A          238 --------------------------------------------------------------------------------  237 (320)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEE
Q 015145          318 DSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHT  397 (412)
Q Consensus       318 ~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yv  397 (412)
                          ...+.|.++|+....+|+|+|+|+|++++|+|++|+.+    ....|+++|...    ..++.||||++|||++|+
T Consensus       238 ----~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~----~~~~C~~~i~~~----~~~~~~ilG~~fl~~~y~  305 (320)
T 4aa9_A          238 ----NRYGEFDVNCGNLRSMPTVVFEINGRDYPLSPSAYTSK----DQGFCTSGFQGD----NNSELWILGDVFIREYYS  305 (320)
T ss_dssp             ----CTTSCEEECGGGGGGCCCEEEEETTEEEEECHHHHEEE----ETTEEEESEEEE----TTCCCEEECHHHHTTEEE
T ss_pred             ----cCCCcEEEeCCCCCcCceEEEEECCEEEEECHHHhccC----CCCeEEEEEEcC----CCCCcEEEChHHhcceEE
Confidence                23467999999888899999999999999999999976    235899988863    234689999999999999


Q ss_pred             EEeCCCCeEEEEecC
Q 015145          398 VFDSGKLRIGFAEAA  412 (412)
Q Consensus       398 vfD~e~~rIGfa~~~  412 (412)
                      |||++++|||||++|
T Consensus       306 vfD~~~~~igfA~a~  320 (320)
T 4aa9_A          306 VFDRANNRVGLAKAI  320 (320)
T ss_dssp             EEETTTTEEEEEEEC
T ss_pred             EEECCCCEEEEEecC
Confidence            999999999999986

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2

Probab=100.00  E-value=1.4e-55  Score=436.42  Aligned_cols=301  Identities=34%  Similarity=0.609  Sum_probs=269.8

Q ss_pred             cccccceeeecCccCccceEEecC-C---CCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV-P---ISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~-~---~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+.+..||||+++||++. +   .|..|+.|+|++|+|++..++.|+++|++|++.|.+++|+|++++..+.++
T Consensus        20 iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~~g~~~~~~~   99 (324)
T 1am5_A           20 IGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVETGKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQ   99 (324)
T ss_dssp             ETTTTEEEEEEEETTCCCEEECBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEESSSSCEEEE
T ss_pred             ECCCCeEEEEEEeCCCcceEEecCCCCcccccCCCcCCCccCCCeEeCCcEEEEEECCCCeEEEEEECceeECCcEEccc
Confidence            689999999999999999999986 2   477889999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145           78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG  157 (412)
Q Consensus        78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g  157 (412)
                      .||++....+..+....++||||||++..+.....+++++|++||+|.+++||+||.+..  ...|.|+|||+|+++++|
T Consensus       100 ~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~--~~~G~l~fGg~d~~~~~g  177 (324)
T 1am5_A          100 ELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGG--ANGSEVMLGGVDNSHYTG  177 (324)
T ss_dssp             EEEEEEECCSTTTTTCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEECCSTT--CSCEEEEESSCCGGGBCS
T ss_pred             EEEEEEecccccccCCCCceEEecCCccccccCCCchHHhHHhcCCCCCCEEEEEecCCC--CCCcEEEECccCHHHcCC
Confidence            999999876655666788999999999887767788999999999999999999998864  248999999999999999


Q ss_pred             CceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhH
Q 015145          158 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLI  237 (412)
Q Consensus       158 ~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  237 (412)
                      ++.|+|+.+..+|.|.+++|+++++.+. +.. ..++|||||+++++|.+++++|.+++++.                  
T Consensus       178 ~l~~~p~~~~~~~~v~l~~i~v~~~~~~-~~~-~~aiiDSGTt~~~lp~~~~~~l~~~~~~~------------------  237 (324)
T 1am5_A          178 SIHWIPVTAEKYWQVALDGITVNGQTAA-CEG-CQAIVDTGTSKIVAPVSALANIMKDIGAS------------------  237 (324)
T ss_dssp             CCEEEEEEEETTEEEEECEEEETTEECC-CCC-EEEEECTTCSSEEECTTTHHHHHHHHTCE------------------
T ss_pred             ceEEEecCCCcEEEEEEeEEEECCceee-ccC-ceEEEecCCccEECCHHHHHHHHHHhCCc------------------
Confidence            9999999999999999999999998763 333 88999999999999999999999988542                  


Q ss_pred             HHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhc
Q 015145          238 WDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELC  317 (412)
Q Consensus       238 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c  317 (412)
                                                                                                      
T Consensus       238 --------------------------------------------------------------------------------  237 (324)
T 1am5_A          238 --------------------------------------------------------------------------------  237 (324)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEE
Q 015145          318 DSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHT  397 (412)
Q Consensus       318 ~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yv  397 (412)
                          ...+.|.++|+....+|+|+|.|+|++++|+|++|+++.    ...|+++|+..+.+....+.||||++|||++|+
T Consensus       238 ----~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~  309 (324)
T 1am5_A          238 ----ENQGEMMGNCASVQSLPDITFTINGVKQPLPPSAYIEGD----QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYT  309 (324)
T ss_dssp             ----ECCCCEECCTTSSSSSCCEEEEETTEEEEECHHHHEEES----SSCEEECEEECCSCCSSSCEEEECHHHHHHEEE
T ss_pred             ----ccCCcEEEeCCCcccCCcEEEEECCEEEEECHHHhcccC----CCeEEEEEEECccCCCCCCcEEEChHHhccEEE
Confidence                013568899998889999999999999999999999985    458999998876543345789999999999999


Q ss_pred             EEeCCCCeEEEEecC
Q 015145          398 VFDSGKLRIGFAEAA  412 (412)
Q Consensus       398 vfD~e~~rIGfa~~~  412 (412)
                      |||++++|||||+++
T Consensus       310 vfD~~~~~igfa~a~  324 (324)
T 1am5_A          310 IYDRTNNKVGFAPAA  324 (324)
T ss_dssp             EEETTTTEEEEEEBC
T ss_pred             EEECCCCEEEEEECC
Confidence            999999999999986

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*

Probab=100.00  E-value=5.9e-54  Score=426.56  Aligned_cols=293  Identities=26%  Similarity=0.441  Sum_probs=261.4

Q ss_pred             cceeeecCccCccceEEecC-C---CC--CCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeeeEE
Q 015145            6 ERLVLALPHKISVSYLIPAV-P---IS--GFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVF   79 (412)
Q Consensus         6 ~~~~~~~p~t~s~~~wvp~~-~---~c--~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~~f   79 (412)
                      +|.+.+..||||+++||++. +   .|  ..|+.|+|++| |++..++.|++.|++|++.|.+++|+|++++.++.++.|
T Consensus        27 ~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~S-T~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~ig~~~~~~~~f  105 (330)
T 1yg9_A           27 NQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKP-KYISDGNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDI  105 (330)
T ss_dssp             TEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSC-EEEEEEEEEEEETTTEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             CEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCC-ceEECCCEEEEEECCceEEEEEEEEEEEECCEEEcCeEE
Confidence            67888899999999999986 2   58  88999999999 999999999999999999999999999999999999999


Q ss_pred             EEEEeecCcccccCCccEEEeccCCccc-cCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeecC
Q 015145           80 IEATREGSLTFLLARFDGIIGLGFREIA-VGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGK  158 (412)
Q Consensus        80 g~~~~~~~~~~~~~~~dGilGLg~~~~s-~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g~  158 (412)
                      |++... +..|....++||||||++..+ .....+++++|++||+| +++||+||.+..+....|.|+|||+|+++++|+
T Consensus       106 g~~~~~-~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~~l~~qg~i-~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~  183 (330)
T 1yg9_A          106 VLADEL-SQEVCILSADVVVGIAAPGCPNALKGKTVLENFVEENLI-APVFSIHHARFQDGEHFGEIIFGGSDWKYVDGE  183 (330)
T ss_dssp             EEEEEE-CTHHHHTTCSEEEECSCTTSCCTTSCCCHHHHHHHTTSS-CSEEEEEEEECTTSCEEEEEEETSCCGGGEEEE
T ss_pred             EEEEEc-ccccccccCceEEEcCcchhccccCCCCHHHHHHhcCCC-CceEEEEEcCCCCCCCCCEEEECCcCHHHccCc
Confidence            999987 444556678999999999887 66688899999999999 999999999875433489999999999999999


Q ss_pred             ceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhHH
Q 015145          159 HTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIW  238 (412)
Q Consensus       159 l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  238 (412)
                      +.|+|+.+..+|.|.+++|.++++.+.  ..+..++|||||+++++|++++++|.+++++..                  
T Consensus       184 l~~~p~~~~~~w~v~l~~i~v~~~~~~--~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~------------------  243 (330)
T 1yg9_A          184 FTYVPLVGDDSWKFRLDGVKIGDTTVA--PAGTQAIIDTSKAIIVGPKAYVNPINEAIGCVV------------------  243 (330)
T ss_dssp             EEEEEBSCTTSCCEECSEEEETTEEEE--CTTCEEEECTTCSSEEEEHHHHHHHHHHHTCEE------------------
T ss_pred             eEEEECCCCCEEEEEeCeEEECCEEEc--CCCcEEEEecCCccccCCHHHHHHHHHHhCCcc------------------
Confidence            999999999999999999999998864  567889999999999999999999999997651                  


Q ss_pred             HHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhcc
Q 015145          239 DLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCD  318 (412)
Q Consensus       239 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~  318 (412)
                                                                                                      
T Consensus       244 --------------------------------------------------------------------------------  243 (330)
T 1yg9_A          244 --------------------------------------------------------------------------------  243 (330)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCC--ce-eeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccce
Q 015145          319 SLPNPMG--ES-IIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY  395 (412)
Q Consensus       319 ~~~~~~~--~~-~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~  395 (412)
                         ...+  .| .+||+....+|+|+|.|+|++++|+|++|+++.    ...|++.|+..    ..++.||||++|||++
T Consensus       244 ---~~~g~~~~~~~~C~~~~~~p~i~f~fgg~~~~l~~~~y~~~~----~~~C~~~i~~~----~~~~~~ilG~~fl~~~  312 (330)
T 1yg9_A          244 ---EKTTTRRICKLDCSKIPSLPDVTFVINGRNFNISSQYYIQQN----GNLCYSGFQPC----GHSDHFFIGDFFVDHY  312 (330)
T ss_dssp             ---EECSSCEEEEECGGGGGGSCCEEEEETTEEEEECHHHHEEEE----TTEEEESEEEE----TTCSSEEECHHHHTTE
T ss_pred             ---cCCCceEEEEEECCCccccCcEEEEECCEEEEECHHHhcccC----CCcEEEEEEeC----CCCCeEEecHHHhhhe
Confidence               1123  67 899998778999999999999999999999986    35899999864    2346899999999999


Q ss_pred             EEEEeCCCCeEEEEecC
Q 015145          396 HTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       396 yvvfD~e~~rIGfa~~~  412 (412)
                      |+|||++++|||||+++
T Consensus       313 y~vfD~~~~riGfA~~~  329 (330)
T 1yg9_A          313 YSEFNWENKTMGFGRSV  329 (330)
T ss_dssp             EEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCEEEEEECC
Confidence            99999999999999985

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*

Probab=100.00  E-value=1.1e-53  Score=432.24  Aligned_cols=297  Identities=28%  Similarity=0.508  Sum_probs=265.4

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+.+..||||+++||++.    ..|..|+.|+|++|+|++..++.|.++|++|++.|.+++|+|++++..+.+ 
T Consensus        70 iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~ig~~~v~~-  148 (375)
T 1miq_A           70 VGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMPY-  148 (375)
T ss_dssp             ETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEE-
T ss_pred             ECCCCeEEEEEEeCCCcceEEccCCCCcccccCCCcCCCccCCceEECCcEEEEEeCCCeEEEEEEEEEEEEcCceECc-
Confidence            689999999999999999999986    368889999999999999999999999999999999999999999999999 


Q ss_pred             EEEEEEe----ecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCC
Q 015145           78 VFIEATR----EGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK  153 (412)
Q Consensus        78 ~fg~~~~----~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~  153 (412)
                      .||++..    +.  .|....++||||||++.++.....+++++|++||+|.+++||+||.+..  ...|.|+|||+|++
T Consensus       149 ~Fg~~~~~~~~~~--~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~~~G~l~fGg~d~~  224 (375)
T 1miq_A          149 KFIEVTDTDDLEP--IYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHD--VHAGYLTIGGIEEK  224 (375)
T ss_dssp             EEEEEEECGGGTT--HHHHSCCCEEEECSSCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTC--TTEEEEEESSCCGG
T ss_pred             EEEEEEecccccc--ccccCCCceEEeCCCCcccccCCCCHHHHHHhccCcCCCEEEEEecCCC--CCCeEEEEcccCHH
Confidence            9999998    43  4555678999999999888777889999999999999999999999863  25899999999999


Q ss_pred             CeecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhc
Q 015145          154 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQY  233 (412)
Q Consensus       154 ~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~  233 (412)
                      ++.|++.|+|+.+..+|.|.++ |.++++.+    ....++|||||+++++|.+++++|.+++++..             
T Consensus       225 ~~~g~l~~~p~~~~~~w~v~l~-i~v~g~~~----~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~-------------  286 (375)
T 1miq_A          225 FYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----EKANVIVDSGTTTITAPSEFLNKFFANLNVIK-------------  286 (375)
T ss_dssp             GEEEEEEEEEBSSSSSSEEEEE-EEETTEEE----EEEEEEECTTBSSEEECHHHHHHHHHHHTCEE-------------
T ss_pred             HcCCceEEEecCCCceEEEEEE-EEECCEEc----ccceEEecCCCccEEcCHHHHHHHHHHhCCcc-------------
Confidence            9999999999999999999999 99999886    45679999999999999999999999997640             


Q ss_pred             hhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHh
Q 015145          234 GDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYI  313 (412)
Q Consensus       234 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~  313 (412)
                                                                                                      
T Consensus       287 --------------------------------------------------------------------------------  286 (375)
T 1miq_A          287 --------------------------------------------------------------------------------  286 (375)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEcccccc
Q 015145          314 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMG  393 (412)
Q Consensus       314 ~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~  393 (412)
                             +...+.|.++|+. ..+|+|+|.|+|++++|+|++|+++....+...|+++|+..+.+   .+.||||++|||
T Consensus       287 -------~~~~g~~~~~C~~-~~~P~i~f~f~g~~~~l~~~~yi~~~~~~g~~~C~~~~~~~~~~---~~~~ILG~~fl~  355 (375)
T 1miq_A          287 -------VPFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDID---SNTFILGDPFMR  355 (375)
T ss_dssp             -------CTTSSCEEEETTC-TTCCCEEEECSSCEEEECGGGSEEESSSSSCSEEEESEEECCSS---SSEEEECHHHHH
T ss_pred             -------cCCCCeEEEECCC-CCCCcEEEEECCEEEEECHHHhEeeccCCCCCeEEEEEEECCCC---CCcEEECHHHhc
Confidence                   1234678999997 78999999999999999999999986543456899999876431   268999999999


Q ss_pred             ceEEEEeCCCCeEEEEecC
Q 015145          394 VYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       394 ~~yvvfD~e~~rIGfa~~~  412 (412)
                      ++|+|||++++|||||+++
T Consensus       356 ~~yvvfD~~~~riGfA~~~  374 (375)
T 1miq_A          356 KYFTVFDYDKESVGFAIAK  374 (375)
T ss_dssp             HEEEEEETTTTEEEEEEEC
T ss_pred             cEEEEEECCCCEEEEEEcC
Confidence            9999999999999999985

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*

Probab=100.00  E-value=1.4e-53  Score=441.40  Aligned_cols=297  Identities=25%  Similarity=0.442  Sum_probs=267.6

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+.+..||||+++|||+.    ..|..|+.|+|++|+|++..++.|.+.|++|++.|.+++|+|++|+..+. +
T Consensus       145 IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~~~ydps~SsT~~~~~~~f~i~YgdGs~~G~~~~Dtv~igg~~v~-~  223 (451)
T 3qvc_A          145 LGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDDTPVKLTSKAGTISGIFSKDLVTIGKLSVP-Y  223 (451)
T ss_dssp             ETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEECSSEEEEEEEEEEEEEETTEEEE-E
T ss_pred             ECCCCcEEEEEEcCCCccEEEecCCCCccccCCCCCCCCCCCcccccCCCEEEEEECCCEEEEEEEEEEEEECCEEEE-E
Confidence            689999999999999999999986    36888999999999999999999999999999999999999999999999 9


Q ss_pred             EEEEEEe----ecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCC
Q 015145           78 VFIEATR----EGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK  153 (412)
Q Consensus        78 ~fg~~~~----~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~  153 (412)
                      .||++..    ..+  +....++||||||++..+..+..+++++|++||+|.+++||+||.+..  ...|.|+|||+|++
T Consensus       224 ~Fg~a~~t~~~~~~--f~~~~~dGILGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FS~~L~~~~--~~~G~l~fGgiD~s  299 (451)
T 3qvc_A          224 KFIEMTEIVGFEPF--YSESDVDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPEN--KNKGYLTIGGIEER  299 (451)
T ss_dssp             EEEEEEEEEECTTH--HHHSCCCEEEECSSBCSSSSCCCCHHHHHHHTTSSSSSEEEEECCTTC--TTEEEEEESSCCGG
T ss_pred             EEEEEEeccccCCC--ccCCCCCEEEecCCCcccccCCCCHHHHHHHcCCCCCCEEEEEEcCCC--CCCCEEEECCcchh
Confidence            9999998    543  555678999999999988777889999999999999999999999873  24899999999999


Q ss_pred             CeecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhc
Q 015145          154 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQY  233 (412)
Q Consensus       154 ~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~  233 (412)
                      ++.|++.|+|+.+..+|.|.++ |.+++.    +.....++|||||+++++|.++++++.+++++..             
T Consensus       300 ~y~G~l~~~pv~~~~~w~v~l~-I~Vgg~----~~~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~-------------  361 (451)
T 3qvc_A          300 FFDGPLNYEKLNHDLMWQVDLD-VHFGNV----SSKKANVILDSATSVITVPTEFFNQFVESASVFK-------------  361 (451)
T ss_dssp             GEEEEEEEEECSSTTSSEEEEE-EEETTE----EEEEEEEEECTTBSSEEECHHHHHHHHTTTTCEE-------------
T ss_pred             hcCCceEEEEcccCCeeEEEEE-EEECCc----cCCCceEEEeCCCccccCCHHHHHHHHHHcCCee-------------
Confidence            9999999999999999999999 999998    3456789999999999999999999999997651             


Q ss_pred             hhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHh
Q 015145          234 GDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYI  313 (412)
Q Consensus       234 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~  313 (412)
                                                                                                      
T Consensus       362 --------------------------------------------------------------------------------  361 (451)
T 3qvc_A          362 --------------------------------------------------------------------------------  361 (451)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEcccccc
Q 015145          314 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMG  393 (412)
Q Consensus       314 ~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~  393 (412)
                             ....+.|.+||+ ...+|+|+|.|+|++++|+|++|+.+..+.+...|++++++.+.+   .+.||||++|||
T Consensus       362 -------~~~~g~y~v~C~-~~~~P~itf~fgg~~i~lp~~~yi~~~~~~~~~~C~~~i~~~~~~---~~~~ILG~~FLr  430 (451)
T 3qvc_A          362 -------VPFLSLYVTTCG-NTKLPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDLE---KNTFVLGDPFMR  430 (451)
T ss_dssp             -------CTTSSCEEEETT-CTTCCCEEEEETTEEEEECHHHHEEECTTTSTTEEEECEEECCCS---TTEEEECHHHHH
T ss_pred             -------cCCCCeEEeeCC-cCcCCcEEEEECCEEEEEcHHHheeecccCCCCeEEEEEEeCCCC---CCCEEECHHHhh
Confidence                   022567999999 789999999999999999999999987654567899999875421   578999999999


Q ss_pred             ceEEEEeCCCCeEEEEecC
Q 015145          394 VYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       394 ~~yvvfD~e~~rIGfa~~~  412 (412)
                      ++|+|||++++|||||+++
T Consensus       431 ~~YvVfD~~n~rIGfA~ak  449 (451)
T 3qvc_A          431 KYFTVYDYDNHTVGFALAK  449 (451)
T ss_dssp             HEEEEEETTTTEEEEEEEC
T ss_pred             cEEEEEECCCCEEEEEEcc
Confidence            9999999999999999986

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*

Probab=100.00  E-value=1.8e-53  Score=427.28  Aligned_cols=301  Identities=23%  Similarity=0.367  Sum_probs=265.7

Q ss_pred             cccccceeeecCccCccceEEecC-C----CCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV-P----ISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKD   76 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~-~----~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~   76 (412)
                      +|||+|.+.+..||||+++||++. +    .|..|+.|+|++|+|++..++.|.+.|++|++.|.+++|+|++++..+.+
T Consensus        26 iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~~g~~~v~~  105 (361)
T 1mpp_A           26 IGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGTGGANGIYFRDSITVGGATVKQ  105 (361)
T ss_dssp             ETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEEETTEEEEE
T ss_pred             ECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCCCCcCCCccCCceEecCCeEEEEECCceEEEEEEEEEEEECCEEEec
Confidence            689999999999999999999986 2    68889999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeecC-----cccccCCccEEEeccCCccccCC------CCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEE
Q 015145           77 QVFIEATREGS-----LTFLLARFDGIIGLGFREIAVGD------AVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEI  145 (412)
Q Consensus        77 ~~fg~~~~~~~-----~~~~~~~~dGilGLg~~~~s~~~------~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l  145 (412)
                      +.||++....+     ..+....++||||||++.++...      ..+++++|++||+|.+++||+||.+.   ...|.|
T Consensus       106 ~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~---~~~G~l  182 (361)
T 1mpp_A          106 QTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTN---DGGGQV  182 (361)
T ss_dssp             EEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCS---SSEEEE
T ss_pred             eEEEEEEeccCccccccccccCCCCCEEEeCCcccccccccccccCCCHHHHHHHcCCCCCcEEEEEecCC---CCCcEE
Confidence            99999998765     44656778999999998776433      78899999999999999999999885   237999


Q ss_pred             EeCCCCCCCeecCceEeeccccc----eeEEEEceEEECCeeeceecCCceEE-EcCCCCCcccCHHHHHHHHHHhCCCc
Q 015145          146 VFGGVDPKHFKGKHTYVPVTKKG----YWQFELGDILIGNQSTGVCEGGCAAI-VDSGTSLLAGPTPVVTEINHAIGGEG  220 (412)
Q Consensus       146 ~fGg~D~~~~~g~l~~~p~~~~~----~w~v~~~~i~v~~~~~~~~~~~~~~i-vDSGts~i~lP~~~~~~l~~~l~~~~  220 (412)
                      +|||+|++++.|++.|+|+.+..    +|.|.+++|.++++.+. +.....++ |||||+++++|.+++++|.+++++..
T Consensus       183 ~fGg~d~~~~~g~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~-~~~~~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~~  261 (361)
T 1mpp_A          183 VFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAV-SFDGAQAFTIDTGTNFFIAPSSFAEKVVKAALPDA  261 (361)
T ss_dssp             EESSCCGGGBSSCCEEEECEEETTEEEEEEEEEEEEEETTEEEE-EEEEEEEEEEETTCCSEEEEHHHHHHHHHHHCTTC
T ss_pred             EEecCChhhcCCceEEEEcccCCCceeEEEEEEeEEEECCeeec-cCCCCEEEEECCCCCceeCCHHHHHHHHHHhCCcc
Confidence            99999999999999999998766    99999999999998864 34567899 99999999999999999999997641


Q ss_pred             eeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhh
Q 015145          221 VVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQL  300 (412)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (412)
                                                                                                      
T Consensus       262 --------------------------------------------------------------------------------  261 (361)
T 1mpp_A          262 --------------------------------------------------------------------------------  261 (361)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCC-CcEEEEE--C-----CEEEEeCcccceEEeccccccceeeee
Q 015145          301 KQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTM-PNVSFTI--G-----DKIFNLSPEQYILKTGEGIAEVCISGF  372 (412)
Q Consensus       301 ~~~~t~~~~~~~~~~~c~~~~~~~~~~~ipC~~~~~l-p~l~f~~--g-----g~~~~i~p~~yl~~~~~~~~~~C~~~i  372 (412)
                                          +...+.|.++|+....+ |+|+|+|  +     |++++|+|++|+++... +...|+++|
T Consensus       262 --------------------~~~~g~~~~~C~~~~~~~p~i~f~f~~g~~~~~g~~~~i~~~~y~~~~~~-~~~~C~~~i  320 (361)
T 1mpp_A          262 --------------------TESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDK-SGETCMFIV  320 (361)
T ss_dssp             --------------------EEETTEEEEEHHHHTTCCCEEEEEEECTTCSSCEEEEEEEGGGGEEECSS-SSCEEEESE
T ss_pred             --------------------cCCCCcEEEECCCcccCCCcEEEEEEcCCcCCCCeEEEECHHHhEEecCC-CCCeeEEEE
Confidence                                11245688999987788 9999999  8     89999999999998543 345899888


Q ss_pred             eeccCCCCCCCcEEEccccccceEEEEeCCCCeEEEEecC
Q 015145          373 MAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       373 ~~~~~~~~~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      +..     ..+.||||++|||++|+|||++++|||||+++
T Consensus       321 ~~~-----~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~  355 (361)
T 1mpp_A          321 LPD-----GGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLA  355 (361)
T ss_dssp             EEE-----SSSCCEEEHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             EeC-----CCCCEEEChHHhccEEEEEECCCCEEEEEEcc
Confidence            864     23689999999999999999999999999985

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...

Probab=100.00  E-value=6e-53  Score=436.86  Aligned_cols=298  Identities=28%  Similarity=0.490  Sum_probs=265.6

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+.+..||||+++|||+.    ..|..|+.|+|++|+|++..+++|+++|++|++.|.+++|+|++|+.++. +
T Consensus       146 IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~~~ydps~SsT~~~~~~~~~i~YgdGs~~G~~~~Dtv~ig~~~v~-~  224 (453)
T 2bju_A          146 VGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-Y  224 (453)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEEEEEEEEECSSSEEEEEEEEEEEEETTEEEE-E
T ss_pred             ECCCCeEEEEEEECCCcceEEeccCCCccccCCCCcCCCccCCceeECCcEEEEEcCCCCeEEEEEEEEEEEeCcEEE-E
Confidence            689999999999999999999986    36888999999999999999999999999999999999999999999999 9


Q ss_pred             EEEEEEeec--CcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145           78 VFIEATREG--SLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF  155 (412)
Q Consensus        78 ~fg~~~~~~--~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~  155 (412)
                      .||++....  +..+....++||||||++.++.....+++++|++||+|.+++||+||.+..  ...|.|+|||+|++++
T Consensus       225 ~Fg~a~~~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~--~~~G~l~fGg~D~~~y  302 (453)
T 2bju_A          225 KFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHD--KHTGFLTIGGIEERFY  302 (453)
T ss_dssp             EEEEEEECGGGTTHHHHSSCCEEEECSCGGGSTTCCCCHHHHHHHTTSSSSCEEEEECCBTT--TBCEEEEESSCCGGGE
T ss_pred             EEEEEEEecccCccccccCCceeEeccCCcccccCCCcHHHHHHHCCCCCCCEEEEEeCCCC--CCCeEEEECCCCHHHc
Confidence            999999876  545556678999999999888777889999999999999999999999862  3489999999999999


Q ss_pred             ecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchh
Q 015145          156 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGD  235 (412)
Q Consensus       156 ~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  235 (412)
                      .|++.|+|+.+.++|.|.++ |.+++ .+  + ....++|||||+++++|.+++++|.+++++.                
T Consensus       303 ~G~l~~~pv~~~~~w~V~l~-I~Vgg-~~--~-~~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~----------------  361 (453)
T 2bju_A          303 EGPLTYEKLNHDLYWQITLD-AHVGN-IM--L-EKANCIVDSGTSAITVPTDFLNKMLQNLDVI----------------  361 (453)
T ss_dssp             EEEEEEEEEEEETTEEEEEE-EEETT-EE--E-EEEEEEECTTCCSEEECHHHHHHHTTTSSCE----------------
T ss_pred             CCceEEEecCCCceEEEEEE-EEECc-EE--e-ccccEEEcCCCCeEecCHHHHHHHHHHhCCc----------------
Confidence            99999999999999999999 99999 33  3 5678999999999999999999999888653                


Q ss_pred             hHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhh
Q 015145          236 LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINE  315 (412)
Q Consensus       236 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~  315 (412)
                                                                                                      
T Consensus       362 --------------------------------------------------------------------------------  361 (453)
T 2bju_A          362 --------------------------------------------------------------------------------  361 (453)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCCCCC-ceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccc
Q 015145          316 LCDSLPNPMG-ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGV  394 (412)
Q Consensus       316 ~c~~~~~~~~-~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~  394 (412)
                           +...| .|.++|+. ..+|+|+|.|+|++++|+|++|+++....+...|+++|+..+.   ..+.||||++|||+
T Consensus       362 -----~~~~g~~~~v~C~~-~~~P~itf~fgg~~~~l~~~~yi~~~~~~g~~~C~~~~~~~~~---~~~~~ILGd~Flr~  432 (453)
T 2bju_A          362 -----KVPFLPFYVTLCNN-SKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDF---PVPTFILGDPFMRK  432 (453)
T ss_dssp             -----ECTTSSCEEEETTC-TTCCCEEEECSSCEEEECHHHHEEECTTTSTTEEEECEEECCC---SSCEEEECHHHHHH
T ss_pred             -----ccCCCceEEEecCC-CCCCcEEEEECCEEEEECHHHhEeecccCCCceEEEEEEeCCC---CCCCEEECHHHhhc
Confidence                 12234 68999997 7899999999999999999999998654345689999987642   13589999999999


Q ss_pred             eEEEEeCCCCeEEEEecC
Q 015145          395 YHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       395 ~yvvfD~e~~rIGfa~~~  412 (412)
                      +|+|||++++|||||+++
T Consensus       433 ~yvVFD~~n~rIGfA~~~  450 (453)
T 2bju_A          433 YFTVFDYDNHSVGIALAK  450 (453)
T ss_dssp             EEEEEETTTTEEEEEEEC
T ss_pred             EEEEEECCCCEEEEEEcc
Confidence            999999999999999985

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*

Probab=100.00  E-value=3.1e-52  Score=413.80  Aligned_cols=297  Identities=25%  Similarity=0.344  Sum_probs=257.0

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEE-CCcEEEEEEcCce-EEEEEEEEEEEECCeEEe
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISI-RGKSCEINYGSGS-ISGFFSQDNVEVGDVVVK   75 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~-~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~~~~   75 (412)
                      +|||+|.+.+..||||+++||++.    +.|..|+.|+|++|+|++. .++.|.++|++|+ +.|.+++|+|++++.++.
T Consensus        23 iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~  102 (329)
T 3c9x_A           23 IGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVSGASWSISYGDGSSSSGDVYTDKVTIGGFSVN  102 (329)
T ss_dssp             ETTTTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCGGGCTTCEECTTCBEEEECTTSCEEEEEEEEEEEEETTEEEE
T ss_pred             ECCCCeEEEEEEcCCCCCeEEecCCCCccccCCCCcCCcccCcCceEcCCCeEEEEeCCCCcEEEEEEEEEEEECCEEEc
Confidence            689999999999999999999986    3456789999999999998 6889999999999 899999999999999999


Q ss_pred             eeEEEEEEeecCcccccCCccEEEeccCCcccc---CCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCC
Q 015145           76 DQVFIEATREGSLTFLLARFDGIIGLGFREIAV---GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDP  152 (412)
Q Consensus        76 ~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~---~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~  152 (412)
                      ++.||++....+..+....++||||||++..+.   ....+++++|+++  |.+++||+||.+..    .|.|+|||+|+
T Consensus       103 ~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~--i~~~~FS~~l~~~~----~G~l~fGg~d~  176 (329)
T 3c9x_A          103 TQGVESATRVSTEFVQDTVISGLVGLAFDSGNQVRPHPQKTWFSNAASS--LAEPLFTADLRHGQ----NGSYNFGYIDT  176 (329)
T ss_dssp             EEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHHTT--SSSSEEEEECCSSS----CEEEEESSCCG
T ss_pred             ceEEEEEEecCccccccCCCceeEEeCcccccccCCCCCCCHHHHHHHh--cCCCEEEEEecCCC----CcEEEEeCcCh
Confidence            999999998755433345789999999987764   2467899999986  89999999998742    89999999999


Q ss_pred             CCeecCceEeecc-ccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhh
Q 015145          153 KHFKGKHTYVPVT-KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVS  231 (412)
Q Consensus       153 ~~~~g~l~~~p~~-~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~  231 (412)
                      +++.|++.|+|+. +.++|.|.+++|.++++.+.  .....++|||||+++++|.+++++|.+++.++..          
T Consensus       177 ~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~~--~~~~~aiiDSGTt~~~lp~~~~~~i~~~i~~a~~----------  244 (329)
T 3c9x_A          177 SVAKGPVAYTPVDNSQGFWEFTASGYSVGGGKLN--RNSIDGIADTGTTLLLLDDNVVDAYYANVQSAQY----------  244 (329)
T ss_dssp             GGCSSCEEEEECBCTTSSCEEEECCEEETTCCCC--SCCEEEEECTTCCSEEECHHHHHHHHTTCTTCEE----------
T ss_pred             hhcccceEEEEccCCCceEEEEEeeEEECCEecc--CCCceEEEECCCCcEeCCHHHHHHHHHhCCCcEE----------
Confidence            9999999999997 57899999999999998763  5678999999999999999999999998854300          


Q ss_pred             hchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHH
Q 015145          232 QYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLS  311 (412)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~  311 (412)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (329)
T 3c9x_A          245 --------------------------------------------------------------------------------  244 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEcccc
Q 015145          312 YINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVF  391 (412)
Q Consensus       312 ~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~f  391 (412)
                               ....+.|.++|+  ..+|+|+|+|+|++++||+++|+++..+.+...|++.|+..+    ..+.||||++|
T Consensus       245 ---------~~~~~~~~~~C~--~~~P~i~f~f~g~~~~ip~~~~~~~~~~~~~~~C~~~i~~~~----~~~~~ILG~~f  309 (329)
T 3c9x_A          245 ---------DNQQEGVVFDCD--EDLPSFSFGVGSSTITIPGDLLNLTPLEEGSSTCFGGLQSSS----GIGINIFGDVA  309 (329)
T ss_dssp             ---------ETTTTEEEEETT--CCCCCEEEEETTEEEEECGGGGEEEESSTTCSEEEESEEECT----TTTSEEECHHH
T ss_pred             ---------cCCCCEEEEECC--CCCCcEEEEECCEEEEECHHHeeeeccCCCCCeEEEEEEcCC----CCCcEEEChHH
Confidence                     022457889999  478999999999999999999998754333468999888642    34689999999


Q ss_pred             ccceEEEEeCCCCeEEEEec
Q 015145          392 MGVYHTVFDSGKLRIGFAEA  411 (412)
Q Consensus       392 l~~~yvvfD~e~~rIGfa~~  411 (412)
                      ||++|+|||++++|||||+.
T Consensus       310 l~~~y~vfD~~~~riGfA~~  329 (329)
T 3c9x_A          310 LKAALVVFDLGNERLGWAQK  329 (329)
T ss_dssp             HTTEEEEEETTTTEEEEEEC
T ss_pred             hccEEEEEECCCCEEeEecC
Confidence            99999999999999999984

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A

Probab=100.00  E-value=8.9e-52  Score=409.84  Aligned_cols=296  Identities=29%  Similarity=0.494  Sum_probs=257.5

Q ss_pred             cccccceeeecCccCccceEEecC--CC-CCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV--PI-SGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~--~~-c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+.+..||||+++||++.  .. |..|+.|+|++|+|++..++.|.++|++|+ +.|.+++|+|++++..+.++
T Consensus        23 iGTP~q~~~v~~DTGSs~lWv~~~~c~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~v~~~  102 (325)
T 2apr_A           23 IGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTKYDPNQSSTYQADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQ  102 (325)
T ss_dssp             ETTTTEEEEEEEETTCCCCEEEBTTCSSCCTTSCCBCGGGCTTCEEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEE
T ss_pred             ECCCCeEEEEEEcCCCCCEEEccCCCchHhcCCCCCCcccCCCeeeCCCEEEEEECCCCCEEEEEEEEEEEECCEEECcE
Confidence            689999999999999999999986  22 567889999999999999999999999998 89999999999999999999


Q ss_pred             EEEEEEeecCcccccCCccEEEeccCCcccc-CCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCee
Q 015145           78 VFIEATREGSLTFLLARFDGIIGLGFREIAV-GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFK  156 (412)
Q Consensus        78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~-~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~  156 (412)
                      .||++....+. |....++||||||++..+. ....+++++|++||+|.+++||+||.+.. ....|.|+|||+|++++.
T Consensus       103 ~fg~~~~~~~~-f~~~~~~GilGLg~~~~s~~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~-~~~~G~l~fGg~d~~~~~  180 (325)
T 2apr_A          103 TIELAKREAAS-FASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAK-NGGGGEYIFGGYDSTKFK  180 (325)
T ss_dssp             EEEEEEEECHH-HHTSSCSEEEECSCGGGCSSTTCCCHHHHHHHTTSCSSSEEEEEECCGG-GTCCEEEEETCCCGGGBC
T ss_pred             EEEEEeccCcc-cccCCCceEEEeCCcccccccCCCCHHHHHHhcCCCCCceEEEEecCCC-CCCCCEEEEccCCchhcc
Confidence            99999987543 5555589999999998764 35778999999999999999999997642 224899999999999999


Q ss_pred             cCceEeecc-ccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchh
Q 015145          157 GKHTYVPVT-KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGD  235 (412)
Q Consensus       157 g~l~~~p~~-~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  235 (412)
                      |++.|+|+. +..+|.|.+++|++++ .+  +.....++|||||+++++|+++++++.+++.+.                
T Consensus       181 g~l~~~p~~~~~~~~~v~l~~i~vg~-~~--~~~~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~----------------  241 (325)
T 2apr_A          181 GSLTTVPIDNSRGWWGITVDRATVGT-ST--VASSFDGILDTGTTLLILPNNIAASVARAYGAS----------------  241 (325)
T ss_dssp             SCCEEEECBCTTSSCEEEECEEEETT-EE--EECCEEEEECTTCSSEEEEHHHHHHHHHHHTCE----------------
T ss_pred             CceEEEEccCCCCEEEEEEeEEEECC-Ee--cCCCceEEEecCCccEECCHHHHHHHHHHHhcc----------------
Confidence            999999996 5789999999999999 33  456789999999999999999999999998654                


Q ss_pred             hHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhh
Q 015145          236 LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINE  315 (412)
Q Consensus       236 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~  315 (412)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (325)
T 2apr_A          242 --------------------------------------------------------------------------------  241 (325)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccce
Q 015145          316 LCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY  395 (412)
Q Consensus       316 ~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~  395 (412)
                          ++. .+.|.++|+. ..+|+|+|+|+|.+++||+++|+++..   ...|++.++..+     .+.||||++|||++
T Consensus       242 ----~~~-~g~~~~~C~~-~~~p~i~f~f~g~~~~ip~~~~~~~~~---~~~C~~~i~~~~-----~~~~iLG~~fl~~~  307 (325)
T 2apr_A          242 ----DNG-DGTYTISCDT-SAFKPLVFSINGASFQVSPDSLVFEEF---QGQCIAGFGYGN-----WGFAIIGDTFLKNN  307 (325)
T ss_dssp             ----ECS-SSCEEECSCG-GGCCCEEEEETTEEEEECGGGGEEEEE---TTEEEESEEEES-----SSSEEECHHHHTTE
T ss_pred             ----cCC-CCeEEEECCC-CCCCcEEEEECCEEEEECHHHEEEcCC---CCeEEEEEEcCC-----CCCEEECHHHhcce
Confidence                011 1568899985 348999999999999999999998653   458999887643     46899999999999


Q ss_pred             EEEEeCCCCeEEEEecC
Q 015145          396 HTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       396 yvvfD~e~~rIGfa~~~  412 (412)
                      |+|||++++|||||+++
T Consensus       308 y~vfD~~~~~igfA~~~  324 (325)
T 2apr_A          308 YVVFNQGVPEVQIAPVA  324 (325)
T ss_dssp             EEEEETTTTEEEEEEBC
T ss_pred             EEEEECCCCEEEEEecC
Confidence            99999999999999986

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...

Probab=100.00  E-value=4.3e-52  Score=412.76  Aligned_cols=296  Identities=23%  Similarity=0.348  Sum_probs=254.9

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEE-CCcEEEEEEcCce-EEEEEEEEEEEECCeEEe
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISI-RGKSCEINYGSGS-ISGFFSQDNVEVGDVVVK   75 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~-~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~~~~   75 (412)
                      +|||+|.+.+..||||+++||++.    +.| .|+.|+|++|+|++. .++.|.++|++|+ +.|.+++|+|++++..+.
T Consensus        23 iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~-~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~v~  101 (329)
T 1oew_A           23 IGTPAQTLNLDFDTGSSDLWVFSSETTASEV-XQTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVT  101 (329)
T ss_dssp             ETTTTEEEEEEEETTCCCEEECBTTSCGGGC--CCCBCGGGCTTCEEEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEE
T ss_pred             ECCCCeEEEEEECCCCCCeEEecCCCCcccc-ccCccCCccCccceecCCCeEEEEeCCCCcEEEEEEEEEEEECCEEEe
Confidence            689999999999999999999986    345 788999999999998 6889999999999 899999999999999999


Q ss_pred             eeEEEEEEeecCcccccCCccEEEeccCCcccc---CCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCC
Q 015145           76 DQVFIEATREGSLTFLLARFDGIIGLGFREIAV---GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDP  152 (412)
Q Consensus        76 ~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~---~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~  152 (412)
                      ++.||++....+..+....++||||||++.++.   ....+++++|+++  |.+++||+||.+.    ..|.|+|||+|+
T Consensus       102 ~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~--i~~~~FS~~L~~~----~~G~l~fGg~d~  175 (329)
T 1oew_A          102 GQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKAS--LDSPVFTADLGYH----APGTYNFGFIDT  175 (329)
T ss_dssp             EEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHTTT--SSSSEEEEECCSS----SCEEEEESCCCT
T ss_pred             eeEEEEEEecCccccccCCCceEEEeccccccccCcCCCCCHHHHHHHh--ccCcEEEEEccCC----CCeEEEEeccCh
Confidence            999999998755433346789999999988764   2467899999987  8999999999874    389999999999


Q ss_pred             CCeecCceEeecc-ccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhh
Q 015145          153 KHFKGKHTYVPVT-KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVS  231 (412)
Q Consensus       153 ~~~~g~l~~~p~~-~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~  231 (412)
                      +++.|++.|+|+. +..+|.|.+++|.++++.+.  .....++|||||+++++|.+++++|.+++.++..          
T Consensus       176 ~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~~--~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~a~~----------  243 (329)
T 1oew_A          176 TAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFK--STSIDGIADTGTTLLYLPATVVSAYWAQVSGAKS----------  243 (329)
T ss_dssp             TSSSSCCEEEECBCTTSSCEEEEEEEEETTSCCE--EEEEEEEECTTCCSEEECHHHHHHHHTTSTTCEE----------
T ss_pred             HhcccceEEEEccCCCceEEEEEeeEEECCeecc--CCCceEEEeCCCCCEECCHHHHHHHHHhCCCcEE----------
Confidence            9999999999997 67899999999999998753  4567899999999999999999999998844300          


Q ss_pred             hchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHH
Q 015145          232 QYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLS  311 (412)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~  311 (412)
                                                                                                      
T Consensus       244 --------------------------------------------------------------------------------  243 (329)
T 1oew_A          244 --------------------------------------------------------------------------------  243 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEcccc
Q 015145          312 YINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVF  391 (412)
Q Consensus       312 ~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~f  391 (412)
                               ....+.|.++|+  ..+|+|+|+|+|++++||+++|+++..+.+...|++.|+..+    ..+.||||++|
T Consensus       244 ---------~~~~g~~~~~C~--~~~P~i~f~fgg~~~~ip~~~~~~~~~~~~~~~C~~~i~~~~----~~~~~iLG~~f  308 (329)
T 1oew_A          244 ---------SSSVGGYVFPCS--ATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSA----GIGINIFGDVA  308 (329)
T ss_dssp             ---------ETTTTEEEEETT--CCCCCEEEEETTEEEEECHHHHEEEESSTTCSEEEESEEEST----TTSSEEECHHH
T ss_pred             ---------cCCCCEEEEECC--CCCCcEEEEECCEEEEECHHHeeeeecCCCCCeEEEEEEeCC----CCCceEEChHH
Confidence                     022467889999  478999999999999999999998754334568999888642    34689999999


Q ss_pred             ccceEEEEeC-CCCeEEEEec
Q 015145          392 MGVYHTVFDS-GKLRIGFAEA  411 (412)
Q Consensus       392 l~~~yvvfD~-e~~rIGfa~~  411 (412)
                      ||++|+|||+ +++|||||++
T Consensus       309 l~~~y~vfD~~~~~riGfA~~  329 (329)
T 1oew_A          309 LKAAFVVFNGATTPTLGFASK  329 (329)
T ss_dssp             HTTEEEEEECSSSCEEEEEEC
T ss_pred             hcCEEEEEECCCCceEEEecC
Confidence            9999999999 9999999985

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2

Probab=100.00  E-value=2e-51  Score=407.25  Aligned_cols=293  Identities=26%  Similarity=0.372  Sum_probs=253.0

Q ss_pred             cceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECCeEEeeeEEE
Q 015145            6 ERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFI   80 (412)
Q Consensus         6 ~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~~~~~~~fg   80 (412)
                      +|.+.+..||||+++||++.    +.|..|+.|+|++|+ ++..++.|.++|++|+ +.|.+++|+|++++..+.++.||
T Consensus        24 ~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~~~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~~~fg  102 (325)
T 1ibq_A           24 KSTLHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSA-TKLSGYSWDISYGDGSSASGDVYRDTVTVGGVTTNKQAVE  102 (325)
T ss_dssp             TEEEEEEEETTCCCEEEECTTSCHHHHTTSCCCBCCSSC-EECTTCBEEEECSSSCEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CEEEEEEEeCCCccceEeeCCCCccccCCCCCCCchhcC-CccCCCEEEEEeCCCCEEEEEEEEeEEEECCEEEcceEEE
Confidence            67888899999999999986    346788999999999 6667899999999998 89999999999999999999999


Q ss_pred             EEEeecCcccccCCccEEEeccCCcccc---CCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145           81 EATREGSLTFLLARFDGIIGLGFREIAV---GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG  157 (412)
Q Consensus        81 ~~~~~~~~~~~~~~~dGilGLg~~~~s~---~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g  157 (412)
                      ++....+..+....++||||||++.++.   ...++++++|+++  |.+++||+||.+..    .|.|+|||+|++++.|
T Consensus       103 ~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~~~--i~~~~FS~~l~~~~----~G~l~fGg~d~~~~~g  176 (325)
T 1ibq_A          103 AASKISSEFVQDTANDGLLGLAFSSINTVQPKAQTTFFDTVKSQ--LDSPLFAVQLKHDA----PGVYDFGYIDDSKYTG  176 (325)
T ss_dssp             EEEEECHHHHTSTTCCEEEECSCGGGCCCBSSCCCCHHHHHGGG--SSSSEEEEEEETTE----EEEEEESSCCGGGBSS
T ss_pred             EEEecCccccccCCCceEEEeCcccccccCcCCCCCHHHHHHHh--cCCcEEEEEecCCC----CceEEECCcChhhccC
Confidence            9998765434346789999999988764   3577899999987  89999999998752    7999999999999999


Q ss_pred             CceEeecc-ccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhh
Q 015145          158 KHTYVPVT-KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDL  236 (412)
Q Consensus       158 ~l~~~p~~-~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  236 (412)
                      ++.|+|+. +..+|.|.+++|.++++.+.  .....++|||||+++++|.+++++|.+++.++.                
T Consensus       177 ~l~~~p~~~~~~~w~v~l~~i~v~~~~~~--~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~----------------  238 (325)
T 1ibq_A          177 SITYTDADSSQGYWGFSTDGYSIGDGSSS--SSGFSAIADTGTTLILLDDEIVSAYYEQVSGAQ----------------  238 (325)
T ss_dssp             CCEEEECBCTTSSCEEEECEEEETTSCCB--SCCEEEEECTTCCSEEECHHHHHHHHTTSTTCB----------------
T ss_pred             ceEEEEcCCCCceEEEEECcEEECCeecc--CCCceEEEeCCCCcEeCCHHHHHHHHHhCCCce----------------
Confidence            99999997 67899999999999998763  567899999999999999999999999984330                


Q ss_pred             HHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhh
Q 015145          237 IWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINEL  316 (412)
Q Consensus       237 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~  316 (412)
                                                                                                      
T Consensus       239 --------------------------------------------------------------------------------  238 (325)
T 1ibq_A          239 --------------------------------------------------------------------------------  238 (325)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceE
Q 015145          317 CDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH  396 (412)
Q Consensus       317 c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y  396 (412)
                         .....+.|.++|+  ..+|+|+|+|+|++++||+++|+++..+.+...|++.++..+    ..+.||||++|||++|
T Consensus       239 ---~~~~~g~~~~~C~--~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~----~~~~~iLG~~fl~~~y  309 (325)
T 1ibq_A          239 ---ESYEAGGYVFSCS--TDLPDFTVVIGDYKAVVPGKYINYAPVSTGSSTCYGGIQSNS----GLGLSILGDVFLKSQY  309 (325)
T ss_dssp             ---CCSSSSSCEEETT--CCCCCEEEEETTEEEEECHHHHEEEESSTTCSEEEESEEECT----TTCSEEECHHHHTTEE
T ss_pred             ---EcCcCCeEEEEcC--CCCCcEEEEECCEEEEECHHHhcccccCCCCCeEEEEEEcCC----CCCceEEChHHhcCEE
Confidence               0122457889999  478999999999999999999998754323468999887642    3468999999999999


Q ss_pred             EEEeCCCCeEEEEecC
Q 015145          397 TVFDSGKLRIGFAEAA  412 (412)
Q Consensus       397 vvfD~e~~rIGfa~~~  412 (412)
                      +|||++++|||||++|
T Consensus       310 ~vfD~~~~~igfA~~~  325 (325)
T 1ibq_A          310 VVFNSEGPKLGFAAQA  325 (325)
T ss_dssp             EEEETTTTEEEEEEBC
T ss_pred             EEEECCCCEEEeeeCC
Confidence            9999999999999986

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*

Probab=100.00  E-value=3.2e-51  Score=405.75  Aligned_cols=290  Identities=26%  Similarity=0.350  Sum_probs=251.6

Q ss_pred             cceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECCeEEeeeEEE
Q 015145            6 ERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFI   80 (412)
Q Consensus         6 ~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~~~~~~~fg   80 (412)
                      +|.+.+..||||+++||++.    +.|..|+.|+|++|+ ++..++.|.++|++|+ +.|.+++|+|++++.+++++.||
T Consensus        25 ~q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~~~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~~~fg  103 (323)
T 1izd_A           25 DDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSA-QKIDGATWSISYGDGSSASGDVYKDKVTVGGVSYDSQAVE  103 (323)
T ss_dssp             TEEEEEEEETTCCCEEECBTTSCHHHHTTCCCBCCCTTC-EEEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CEEEEEEEcCCCcceEEecCCCCcccccCCCCCCccccC-CccCCCeEEEEcCCCCeEEEEEEEEEEEECCEEECceEEE
Confidence            67888899999999999987    346788999999999 7767899999999999 89999999999999999999999


Q ss_pred             EEEeecCcccccCCccEEEeccCCcccc---CCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145           81 EATREGSLTFLLARFDGIIGLGFREIAV---GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG  157 (412)
Q Consensus        81 ~~~~~~~~~~~~~~~dGilGLg~~~~s~---~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g  157 (412)
                      +++...+..+....++||||||++.++.   ....+++++|++|  |.+++||+||.+.    ..|.|+|||+|+++++|
T Consensus       104 ~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~~~--i~~~~FS~~L~~~----~~G~l~fGg~d~~~~~g  177 (323)
T 1izd_A          104 SAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNVKSS--LSEPIFAVALKHN----APGVYDFGYTDSSKYTG  177 (323)
T ss_dssp             EEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHGGG--SSSSEEEEECCTT----SCEEEEESSCCTTSEEE
T ss_pred             EEEeccccccccCCCceEEecCcccccccCCCCCCCHHHHHHHh--ccCcEEEEEccCC----CCCEEEECCcCcccccc
Confidence            9998755433346789999999998765   3577899999987  8999999999875    28999999999999999


Q ss_pred             CceEeecc-ccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhh
Q 015145          158 KHTYVPVT-KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDL  236 (412)
Q Consensus       158 ~l~~~p~~-~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  236 (412)
                      ++.|+|+. +..+|.|.+++|.+++ .+  +.....++|||||+++++|.+++++|.+++.++.                
T Consensus       178 ~l~~~p~~~~~~~w~v~l~~i~v~~-~~--~~~~~~aiiDSGTs~~~lp~~~~~~i~~~i~ga~----------------  238 (323)
T 1izd_A          178 SITYTDVDNSQGFWGFTADGYSIGS-DS--SSDSITGIADTGTTLLLLDDSIVDAYYEQVNGAS----------------  238 (323)
T ss_dssp             EEEEEECBCTTSSCEEEESEEEETT-EE--ECCCEEEEECTTCCSEEECHHHHHHHHTTSTTCE----------------
T ss_pred             ceEEEECCCCCceEEEEECeEEECC-cc--cCCCceEEEeCCCcceeCCHHHHHHHHHhCCCcE----------------
Confidence            99999996 6789999999999999 54  4667899999999999999999999999885330                


Q ss_pred             HHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhh
Q 015145          237 IWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINEL  316 (412)
Q Consensus       237 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~  316 (412)
                                                                                                      
T Consensus       239 --------------------------------------------------------------------------------  238 (323)
T 1izd_A          239 --------------------------------------------------------------------------------  238 (323)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceE
Q 015145          317 CDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH  396 (412)
Q Consensus       317 c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y  396 (412)
                         .....+.|.+||+  ..+|+|+|+|+|++++|++++|+++..  +...|++.|+..+    ..+.||||++|||++|
T Consensus       239 ---~~~~~g~~~~~C~--~~~P~i~f~fgg~~~~i~~~~~~~~~~--~~~~C~~~i~~~~----~~~~~IlG~~fl~~~y  307 (323)
T 1izd_A          239 ---YDSSQGGYVFPSS--ASLPDFSVTIGDYTATVPGEYISFADV--GNGQTFGGIQSNS----GIGFSIFGDVFLKSQY  307 (323)
T ss_dssp             ---EETTTTEEEEETT--CCCCCEEEEETTEEEEECHHHHEEEEC--STTEEEESEEECT----TTSSEEECHHHHTTEE
T ss_pred             ---EcCcCCEEEEECC--CCCceEEEEECCEEEecCHHHeEEecC--CCCeEEEEEEcCC----CCCcEEEChHHhcCEE
Confidence               0122467899999  478999999999999999999998753  3468999888642    3468999999999999


Q ss_pred             EEEeCCCCeEEEEecC
Q 015145          397 TVFDSGKLRIGFAEAA  412 (412)
Q Consensus       397 vvfD~e~~rIGfa~~~  412 (412)
                      +|||++++|||||++|
T Consensus       308 ~vfD~~~~riGfA~~a  323 (323)
T 1izd_A          308 VVFDASGPRLGFAAQA  323 (323)
T ss_dssp             EEEETTTTEEEEEEEC
T ss_pred             EEEECCCCEEEEeeCC
Confidence            9999999999999986

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A

Probab=100.00  E-value=2.2e-51  Score=406.74  Aligned_cols=290  Identities=24%  Similarity=0.370  Sum_probs=250.4

Q ss_pred             cceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECCeEEeeeEEE
Q 015145            6 ERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFI   80 (412)
Q Consensus         6 ~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~~~~~~~fg   80 (412)
                      +|.+.+..||||+++||++.    +.|..|+.|+|++|+ ++..++.|+++|++|+ +.|.+++|+|++++.++.++.||
T Consensus        25 ~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~~~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~~~fg  103 (323)
T 1bxo_A           25 GTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATG-KELSGYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQ  103 (323)
T ss_dssp             TEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHC-EEEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CEEEEEEEeCCCcceEEecCCCCchhccCCCCCCcccCC-cccCCCeEEEEeCCCCeEEEEEEEEEEEECCEEECcEEEE
Confidence            78888899999999999986    346788999999999 7777899999999999 89999999999999999999999


Q ss_pred             EEEeecCcccccCCccEEEeccCCcccc---CCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145           81 EATREGSLTFLLARFDGIIGLGFREIAV---GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG  157 (412)
Q Consensus        81 ~~~~~~~~~~~~~~~dGilGLg~~~~s~---~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g  157 (412)
                      +++...+..+....++||||||++.++.   ....+++++|+++  |.+++||+||.+.    ..|.|+|||+|+++++|
T Consensus       104 ~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~--i~~~~FS~~L~~~----~~G~l~fGg~d~~~~~g  177 (323)
T 1bxo_A          104 AAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSS--LAQPLFAVALKHQ----QPGVYDFGFIDSSKYTG  177 (323)
T ss_dssp             EEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCCCHHHHHGGG--BSSSEEEEECCSS----SCEEEEESSCCGGGBSS
T ss_pred             EEEecCcccccCCCCceEEEeCcccccccccCCCCCHHHHHHHh--cCCcEEEEEEeCC----CCceEEEeCcChhhccC
Confidence            9998755433346789999999988765   2467899999987  8999999999874    28999999999999999


Q ss_pred             CceEeecc-ccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhh
Q 015145          158 KHTYVPVT-KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDL  236 (412)
Q Consensus       158 ~l~~~p~~-~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  236 (412)
                      ++.|+|+. +.++|.|.+++|++++ .   +.....++|||||+++++|.+++++|.+++.++.                
T Consensus       178 ~l~~~p~~~~~~~w~v~l~~i~v~~-~---~~~~~~aiiDSGTs~~~lP~~~~~~l~~~i~~a~----------------  237 (323)
T 1bxo_A          178 SLTYTGVDNSQGFWSFNVDSYTAGS-Q---SGDGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQ----------------  237 (323)
T ss_dssp             CCEEEECBCTTSSCEEEEEEEEETT-E---EEEEEEEEECTTCSSEEECHHHHHHHHTTSTTCE----------------
T ss_pred             ceEEEECCCCCCeEEEEEeeEEECC-c---cCCCceEEEeCCCCceeCCHHHHHHHHHhCCCce----------------
Confidence            99999996 6789999999999999 2   3456789999999999999999999999984430                


Q ss_pred             HHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhh
Q 015145          237 IWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINEL  316 (412)
Q Consensus       237 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~  316 (412)
                                                                                                      
T Consensus       238 --------------------------------------------------------------------------------  237 (323)
T 1bxo_A          238 --------------------------------------------------------------------------------  237 (323)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceE
Q 015145          317 CDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH  396 (412)
Q Consensus       317 c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y  396 (412)
                         .....+.|.++|+  ..+|+|+|+|+|++++||+++|+++... +...|++.|+..+    ..+.||||++|||++|
T Consensus       238 ---~~~~~g~~~~~C~--~~~P~i~f~fgg~~~~l~~~~~~~~~~~-~~~~C~~~i~~~~----~~~~~ILG~~fl~~~y  307 (323)
T 1bxo_A          238 ---QDSNAGGYVFDCS--TNLPDFSVSISGYTATVPGSLINYGPSG-DGSTCLGGIQSNS----GIGFSIFGDIFLKSQY  307 (323)
T ss_dssp             ---EETTTTEEEECTT--CCCCCEEEEETTEEEEECHHHHEEEECS-SSSCEEESEEECT----TCSSEEECHHHHTTEE
T ss_pred             ---EcCcCCEEEEECC--CCCceEEEEECCEEEEECHHHeEEeccC-CCCeEEEEEECCC----CCCcEEEChHHHcCEE
Confidence               0023467899999  4789999999999999999999987533 3468999888642    3468999999999999


Q ss_pred             EEEeCCCCeEEEEecC
Q 015145          397 TVFDSGKLRIGFAEAA  412 (412)
Q Consensus       397 vvfD~e~~rIGfa~~~  412 (412)
                      +|||++++|||||++|
T Consensus       308 ~vfD~~~~riGfA~~a  323 (323)
T 1bxo_A          308 VVFDSDGPQLGFAPQA  323 (323)
T ss_dssp             EEEETTTTEEEEEEBC
T ss_pred             EEEECCCCEEEEecCC
Confidence            9999999999999986

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*

Probab=100.00  E-value=5.8e-51  Score=405.11  Aligned_cols=291  Identities=22%  Similarity=0.332  Sum_probs=255.3

Q ss_pred             cccccceeeecCccCccceEEecC-------CCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECCeE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV-------PISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGDVV   73 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~-------~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~~   73 (412)
                      +|||+|.+....||||+++||++.       ..|..|+.|+|++|+|++..++.|.+.|++|+ +.|.+++|+|++++..
T Consensus        20 iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~~G~~~~D~v~~g~~~   99 (339)
T 3fv3_A           20 VGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAAFTIRYGDGSTSQGTWGKDTVTINGVS   99 (339)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTTTCCBCGGGCTTCEEEEEEEEEECTTSCEEEEEEEEEEEEETTEE
T ss_pred             EcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCCCCcCCCccCcceeeCCceEEEEECCCceEEEEEEEEEEEECCEE
Confidence            689999999999999999999943       27888999999999999999999999999995 8999999999999999


Q ss_pred             EeeeEEEEEEeecCcccccCCccEEEeccCCcccc----------CCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCc
Q 015145           74 VKDQVFIEATREGSLTFLLARFDGIIGLGFREIAV----------GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGG  143 (412)
Q Consensus        74 ~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~----------~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G  143 (412)
                      ++++.||++....+       .+||||||++..+.          ....+++++|++||+|.+++||+||.+..  ...|
T Consensus       100 v~~~~fg~~~~~~~-------~~GilGLg~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~--~~~G  170 (339)
T 3fv3_A          100 ITGQQIADVTQTSV-------DQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPS--AETG  170 (339)
T ss_dssp             EEEEEEEEEEEESS-------SSCEEECSCGGGCCCBCTTSCBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTT--CSEE
T ss_pred             ECceEEEEEEecCC-------CceeEEecCccccccccccccccCccCCcHHHHHHHCCCCCCceEEEEECCCC--CCCe
Confidence            99999999998643       49999999988653          23567999999999999999999998763  2479


Q ss_pred             EEEeCCCCCCCeecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceee
Q 015145          144 EIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVS  223 (412)
Q Consensus       144 ~l~fGg~D~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~  223 (412)
                      .|+|||+|++++.|+++|+|+.+..+|.|.+++|.++++.+..   +..++|||||+++++|.+++++|.+++++..  .
T Consensus       171 ~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~---~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~--~  245 (339)
T 3fv3_A          171 TIIFGGVDNAKYSGKLVAEQVTSSQALTISLASVNLKGSSFSF---GDGALLDSGTTLTYFPSDFAAQLADKAGARL--V  245 (339)
T ss_dssp             EEEETEEETTSBSSCCEEEEBCCSSSCEEEEEEEEESSCEEEE---EEEEEECTTBSSEEECHHHHHHHHHHHTCEE--E
T ss_pred             EEEEeeechHHeecceEEEecccCccEEEEEEEEEECCEeecC---CccEEEeCCCCCEecCHHHHHHHHHHcCCEE--c
Confidence            9999999999999999999999989999999999999998753   3679999999999999999999999998651  0


Q ss_pred             cchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhh
Q 015145          224 AECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQK  303 (412)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (412)
                                                                                                      
T Consensus       246 --------------------------------------------------------------------------------  245 (339)
T 3fv3_A          246 --------------------------------------------------------------------------------  245 (339)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEEC-CEEEEeCcccceEEeccccccceeeeeeeccCCCCCC
Q 015145          304 QTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRG  382 (412)
Q Consensus       304 ~t~~~~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~g-g~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~  382 (412)
                                     ..+...+.|.++|+. ..+|+|+|+|+ |++++|++++|+++..   ...|+++|..       .
T Consensus       246 ---------------~~~~~~~~~~~~C~~-~~~p~i~f~f~~g~~~~v~~~~~~~~~~---~~~C~~~i~~-------~  299 (339)
T 3fv3_A          246 ---------------QVARDQYLYFIDCNT-DTSGTTVFNFGNGAKITVPNTEYVYQNG---DGTCLWGIQP-------S  299 (339)
T ss_dssp             ---------------EEETTEEEEEECTTC-CCCSEEEEEETTSCEEEEEGGGGEEECS---SSCEEESEEE-------C
T ss_pred             ---------------cccccCceEEEecCC-CCCCcEEEEECCCCEEEECHHHheeeCC---CCeEEEEEEe-------C
Confidence                           000124568899996 56899999995 8999999999998753   3489999985       2


Q ss_pred             CcEEEccccccceEEEEeCCCCeEEEEecC
Q 015145          383 PLWILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       383 ~~~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      +.||||++|||++|+|||++++|||||+++
T Consensus       300 ~~~ilG~~fl~~~y~vfD~~~~~igfA~~~  329 (339)
T 3fv3_A          300 DDTILGDNFLRHAYLLYNLDANTISIAQVK  329 (339)
T ss_dssp             SSCEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             CcEEeChHHHhCEEEEEECCCCEEEEEecC
Confidence            569999999999999999999999999985

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}

Probab=100.00  E-value=1.1e-50  Score=404.05  Aligned_cols=292  Identities=21%  Similarity=0.313  Sum_probs=252.9

Q ss_pred             cccccceeeecCccCccceEEecC-------------CCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV-------------PISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNV   67 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~-------------~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v   67 (412)
                      +|||+|.+.+..||||+++||+++             ..|..|+.|+|++|+|++..++.|.++|++|+ +.|.+++|+|
T Consensus        20 iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~~G~~~~D~v   99 (342)
T 2qzx_A           20 VGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNLNTRFDIKYGDGSYAKGKLYKDTV   99 (342)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred             ECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccCCCcEEEEeCCCCeEEEEEEEEEE
Confidence            689999999999999999999854             14777889999999999999999999999998 6999999999


Q ss_pred             EECCeEEeeeEEEEEEeecCcccccCCccEEEeccCCccccC--CCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEE
Q 015145           68 EVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVG--DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEI  145 (412)
Q Consensus        68 ~lg~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~--~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l  145 (412)
                      ++++..+.++.||++....       ..+||||||++..+..  ...+++.+|++||+|.+++||+||.+..  ...|.|
T Consensus       100 ~~g~~~v~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~--~~~G~l  170 (342)
T 2qzx_A          100 GIGGVSVRDQLFANVWSTS-------ARKGILGIGFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAE--ASTGQI  170 (342)
T ss_dssp             EETTEEEEEEEEEEEEEEC-------SSSCEEECSCGGGCSSSSCCCCHHHHHHHTTSSSSSEEEEECCCTT--CSEEEE
T ss_pred             EECCEEecceEEEEEEecC-------CCcCEEEEccccccCCCccCccHHHHHHHCCCcCccEEEEEeCCCC--CCCeEE
Confidence            9999999999999999763       4689999999876542  3568999999999999999999998752  347999


Q ss_pred             EeCCCCCCCeecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecc
Q 015145          146 VFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE  225 (412)
Q Consensus       146 ~fGg~D~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~  225 (412)
                      +|||+|+++|.|++.|+|+.+..+|.|.+++|.++++.+.   .+..++|||||+++++|++++++|.+++++....   
T Consensus       171 ~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~---~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~---  244 (342)
T 2qzx_A          171 IFGGIDKAKYSGSLVDLPITSEKKLTVGLRSVNVRGRNVD---ANTNVLLDSGTTISYFTRSIVRNILYAIGAQMKF---  244 (342)
T ss_dssp             EETEEETTSBSSCCEEEECCCSSSCEEEEEEEEETTEEEE---EEEEEEECTTCSSEEECHHHHHHHHHHHTCEEEE---
T ss_pred             EECccchhhEecceEEEeccCCceEEEEEeEEEECCEecC---CCcCEEEeCCCCCEEcCHHHHHHHHHHhCCeeee---
Confidence            9999999999999999999998999999999999998875   3467999999999999999999999999765100   


Q ss_pred             hhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhh
Q 015145          226 CKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQT  305 (412)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  305 (412)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (342)
T 2qzx_A          245 --------------------------------------------------------------------------------  244 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEE-CCEEEEeCcccceEEec---cccccceeeeeeeccCCCCC
Q 015145          306 KEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTI-GDKIFNLSPEQYILKTG---EGIAEVCISGFMAFDLPPPR  381 (412)
Q Consensus       306 ~~~~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~-gg~~~~i~p~~yl~~~~---~~~~~~C~~~i~~~~~~~~~  381 (412)
                                    -+...+.|.++|+.   +|+|+|+| +|++++|++++|+++..   ......|++.++..      
T Consensus       245 --------------~~~~~~~~~~~C~~---~p~i~f~f~~g~~~~i~~~~~~~~~~~~~~~~~~~C~~~i~~~------  301 (342)
T 2qzx_A          245 --------------DSAGNKVYVADCKT---SGTIDFQFGNNLKISVPVSEFLFQTYYTSGKPFPKCEVRIRES------  301 (342)
T ss_dssp             --------------CTTSCEEEEECTTC---CCEEEEEETTTEEEEEEGGGGEECCBCTTSCBCSSEEESEEEC------
T ss_pred             --------------ccCCCcEEEEECCC---CCcEEEEECCCcEEEEcHHHhcccccccCCCCCCccEEEEecC------
Confidence                          00122378899984   89999999 68999999999998743   12346899988753      


Q ss_pred             CCcEEEccccccceEEEEeCCCCeEEEEecC
Q 015145          382 GPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       382 ~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                       +.||||++|||++|+|||++++|||||+++
T Consensus       302 -~~~iLG~~fl~~~y~vfD~~~~~igfA~~~  331 (342)
T 2qzx_A          302 -EDNILGDNFLRSAYVVYNLDDKKISMAPVK  331 (342)
T ss_dssp             -SSCEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             -CCcEeChHhhhcEEEEEECCCCEEEEEeeC
Confidence             359999999999999999999999999985

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*

Probab=100.00  E-value=1.1e-50  Score=403.33  Aligned_cols=293  Identities=22%  Similarity=0.333  Sum_probs=252.1

Q ss_pred             cccccceeeecCccCccceEEecC-------------CCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV-------------PISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNV   67 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~-------------~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v   67 (412)
                      +|||+|.+....||||+++||+++             ..|..|+.|+|++|+|++..++.|.+.|++|+ +.|.+++|+|
T Consensus        20 iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~~G~~~~D~v   99 (342)
T 3pvk_A           20 VGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYGDGSSSQGTLYKDTV   99 (342)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred             EcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCCCCcCCCccCcceeecCCeEEEEecCCCeEEEEEEEEEE
Confidence            689999999999999999999854             35777899999999999999999999999998 8999999999


Q ss_pred             EECCeEEeeeEEEEEEeecCcccccCCccEEEeccCCccccC-CCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEE
Q 015145           68 EVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVG-DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIV  146 (412)
Q Consensus        68 ~lg~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~-~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~  146 (412)
                      ++++..+.++.||++....       ..+||||||++..+.. ...+++.+|++||+|.+++||+||++..  ...|.|+
T Consensus       100 ~ig~~~v~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~~L~~qg~i~~~~fs~~l~~~~--~~~G~l~  170 (342)
T 3pvk_A          100 GFGGVSIKNQVLADVDSTS-------IDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPD--AATGQII  170 (342)
T ss_dssp             EETTEEEEEEEEEEEEEES-------SSSCEEECSCGGGCSSCSSCCHHHHHHHTTSSSSSEEEEECCCTT--CSEEEEE
T ss_pred             EECCEEecceEEEEEEccC-------CCccEEEecCccccccccCCcHHHHHHhcCCCCCceEEEEeCCCC--CCCcEEE
Confidence            9999999999999998753       4599999999886543 3567999999999999999999998753  2479999


Q ss_pred             eCCCCCCCeecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecch
Q 015145          147 FGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAEC  226 (412)
Q Consensus       147 fGg~D~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~  226 (412)
                      |||+|++++.|++.|+|+.+..+|.|.+++|.++++.+..  ....++|||||+++++|.+++++|.+++++...     
T Consensus       171 fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~--~~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~-----  243 (342)
T 3pvk_A          171 FGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINT--DNVDVLLDSGTTITYLQQDLADQIIKAFNGKLT-----  243 (342)
T ss_dssp             ETEEETTSBSSCCEEEECCCSSSCEEEEEEEEETTEEEEE--EEEEEEECTTCSSEEECHHHHHHHHHHTTCEEE-----
T ss_pred             ECccCccceeeeeEEeecCccceEEEEEeEEEECCEEecC--CCceEEEeCCCCCeecCHHHHHHHHHHcCCeec-----
Confidence            9999999999999999999989999999999999998753  347899999999999999999999999977610     


Q ss_pred             hhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhH
Q 015145          227 KLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTK  306 (412)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  306 (412)
                                                                                                      
T Consensus       244 --------------------------------------------------------------------------------  243 (342)
T 3pvk_A          244 --------------------------------------------------------------------------------  243 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEEC-CEEEEeCcccceEEecccc---ccceeeeeeeccCCCCCC
Q 015145          307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGI---AEVCISGFMAFDLPPPRG  382 (412)
Q Consensus       307 ~~~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~g-g~~~~i~p~~yl~~~~~~~---~~~C~~~i~~~~~~~~~~  382 (412)
                                  .-....+.|.++|+.   .|+|+|+|+ |.+++||+++|+++.....   ...|++.+...       
T Consensus       244 ------------~~~~~~~~~~~~C~~---~p~i~f~f~~g~~~~vp~~~~~~~~~~~~g~~~~~C~~~i~~~-------  301 (342)
T 3pvk_A          244 ------------QDSNGNSFYEVDCNL---SGDVVFNFSKNAKISVPASEFAASLQGDDGQPYDKCQLLFDVN-------  301 (342)
T ss_dssp             ------------ECTTSCEEEEECSCC---CSEEEEEESTTCEEEEEGGGGEEC----------CEEESEEEC-------
T ss_pred             ------------ccCCCceEEEEecCC---CCceEEEECCCCEEEEcHHHheeeccccCCCcCCeeEEEEeeC-------
Confidence                        000112348999994   599999998 7999999999998743222   36899998752       


Q ss_pred             CcEEEccccccceEEEEeCCCCeEEEEecC
Q 015145          383 PLWILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       383 ~~~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      +.||||++|||++|+|||++++|||||+++
T Consensus       302 ~~~ilG~~fl~~~y~vfD~~~~~igfA~~~  331 (342)
T 3pvk_A          302 DANILGDNFLRSAYIVYDLDDNEISLAQVK  331 (342)
T ss_dssp             TTCEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             CCeEeCHHHHhcEEEEEECCCCEEEEEecC
Confidence            578999999999999999999999999985

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2

Probab=100.00  E-value=2.3e-50  Score=400.93  Aligned_cols=287  Identities=22%  Similarity=0.321  Sum_probs=251.8

Q ss_pred             cccccceeeecCccCccceEEecC---C----------CCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV---P----------ISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNV   67 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~---~----------~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v   67 (412)
                      +|||+|.+.+..||||+++||+++   +          .|..|+.|+|++|+|++..++.|.++|++|+ +.|.+++|+|
T Consensus        20 iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~~G~~~~D~v   99 (334)
T 1j71_A           20 VGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLNQDFSIEYGDLTSSQGSFYKDTV   99 (334)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEEEEEEEEBTTSCEEEEEEEEEEE
T ss_pred             EcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccCCCceEEEECCCCEEEEEEEEEEE
Confidence            689999999999999999999864   1          4777899999999999999999999999998 7999999999


Q ss_pred             EECCeEEeeeEEEEEEeecCcccccCCccEEEeccCCccccC--CCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEE
Q 015145           68 EVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVG--DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEI  145 (412)
Q Consensus        68 ~lg~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~--~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l  145 (412)
                      ++++..+.++.||++....       ..+||||||++..+..  ...+++.+|++||+|.+++||+||.+..  ...|.|
T Consensus       100 ~~g~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~--~~~G~l  170 (334)
T 1j71_A          100 GFGGISIKNQQFADVTTTS-------VDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSED--ASTGKI  170 (334)
T ss_dssp             EETTEEEEEEEEEEEEEES-------SSSCEEECSCGGGSSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTT--CSEEEE
T ss_pred             EECCEEEccEEEEEEEecC-------CCccEEEEcCCcccCccccCCcHHHHHHHCCCCCccEEEEEeCCCC--CCCeEE
Confidence            9999999999999999763       4699999999877542  4568999999999999999999998752  348999


Q ss_pred             EeCCCCCCCeecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecc
Q 015145          146 VFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE  225 (412)
Q Consensus       146 ~fGg~D~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~  225 (412)
                      +|||+|++++.|++.|+|+.+..+|.|.+++|.++++.+.   .+..++|||||+++++|.+++++|.+++++..     
T Consensus       171 ~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~---~~~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~-----  242 (334)
T 1j71_A          171 IFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVS---TNADVVLDSGTTITYFSQSTADKFARIVGATW-----  242 (334)
T ss_dssp             EETEEETTSEEEEEEEEECCCSSSCEEEEEEEEETTEEEE---EEEEEEECTTCSSEEECHHHHHHHHHHHTCEE-----
T ss_pred             EEeeechHHccCceEEEEccCCCeEEEEEeEEEECCEecc---CCccEEEeCCCCcEecCHHHHHHHHHHcCCcc-----
Confidence            9999999999999999999998999999999999998875   34679999999999999999999999997651     


Q ss_pred             hhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhh
Q 015145          226 CKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQT  305 (412)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  305 (412)
                                                                                                      
T Consensus       243 --------------------------------------------------------------------------------  242 (334)
T 1j71_A          243 --------------------------------------------------------------------------------  242 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhhhccCCCCCCCcee-eeCCCCCCCCcEEEEE-CCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCC
Q 015145          306 KEKVLSYINELCDSLPNPMGESI-IDCDRIPTMPNVSFTI-GDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGP  383 (412)
Q Consensus       306 ~~~~~~~~~~~c~~~~~~~~~~~-ipC~~~~~lp~l~f~~-gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~  383 (412)
                                     +...+.|. ++|+.   +|+|+|+| +|++++|+|++|+++..+  ...|++.++..       +
T Consensus       243 ---------------~~~~~~~~~~~C~~---~p~i~f~f~~g~~~~i~~~~y~~~~~~--~~~C~~~i~~~-------~  295 (334)
T 1j71_A          243 ---------------DSRNEIYRLPSCDL---SGDAVFNFDQGVKITVPLSELILKDSD--SSICYFGISRN-------D  295 (334)
T ss_dssp             ---------------ETTTTEEECSSSCC---CSEEEEEESTTCEEEEEGGGGEEECSS--SSCEEESEEEC-------T
T ss_pred             ---------------cCCCceEEEEcCCC---CCceEEEEcCCcEEEECHHHheeecCC--CCeeEEEEeEC-------C
Confidence                           01134677 89984   89999999 689999999999998543  23599988753       3


Q ss_pred             cEEEccccccceEEEEeCCCCeEEEEecC
Q 015145          384 LWILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       384 ~~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      .||||++|||++|+|||++++|||||+++
T Consensus       296 ~~iLG~~fl~~~y~vfD~~~~~igfA~~~  324 (334)
T 1j71_A          296 ANILGDNFLRRAYIVYDLDDKTISLAQVK  324 (334)
T ss_dssp             TCEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             CcEEChHhhccEEEEEECCCCEEEEEecC
Confidence            59999999999999999999999999975

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2

Probab=100.00  E-value=4.1e-50  Score=399.75  Aligned_cols=295  Identities=24%  Similarity=0.382  Sum_probs=251.7

Q ss_pred             cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeeeEEEE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIE   81 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~~fg~   81 (412)
                      +|||+|.+.+..||||+++||++.      +.|+|++|++  ..++.|.++|++|++.|.+++|+|++++..+.++.||+
T Consensus        20 iGTP~q~~~v~~DTGSs~lWv~~~------~~y~~s~Ss~--~~~~~~~i~Yg~Gs~~G~~~~Dtv~~g~~~v~~~~fg~   91 (340)
T 1wkr_A           20 VGSPATTYSLLVDTGSSNTWLGAD------KSYVKTSTSS--ATSDKVSVTYGSGSFSGTEYTDTVTLGSLTIPKQSIGV   91 (340)
T ss_dssp             ETTTTEEEEEEEETTCCCCEECSS------SCCCCCTTCE--EEEEEEEEECSSCEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ECCCCcEEEEEEeCCChhheecCC------CccCCcCCcc--ccCceEEEEECCcEEEEEEEEEEEEECCEEEcceEEEE
Confidence            689999999999999999999874      5799988775  45789999999999999999999999999999999999


Q ss_pred             EEeecCcccccCCccEEEeccCCcccc--------CCCCchHHHHHHcCCCCCCeEEEEecCCC-CCCCCcEEEeCCCCC
Q 015145           82 ATREGSLTFLLARFDGIIGLGFREIAV--------GDAVPVWDNMVEQGLVSEEVFSFWLNRDP-DAEEGGEIVFGGVDP  152 (412)
Q Consensus        82 ~~~~~~~~~~~~~~dGilGLg~~~~s~--------~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~-~~~~~G~l~fGg~D~  152 (412)
                      +....+  +  ..++||||||++..+.        ...++++++|++||+|.+++||+||.+.. +....|.|+|||+|+
T Consensus        92 ~~~~~~--~--~~~~GilGLg~~~~s~~~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~  167 (340)
T 1wkr_A           92 ASRDSG--F--DGVDGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDS  167 (340)
T ss_dssp             EEEEES--C--TTCSEEEECSCGGGGTTSEESCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCG
T ss_pred             EEccCC--C--cCCCcEEECCccccccccccccccccCCCHHHHHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccCh
Confidence            998654  3  3579999999998764        35678999999999999999999998742 223479999999999


Q ss_pred             CCeecCceEeeccc----cceeEEEEceEEECC-eeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchh
Q 015145          153 KHFKGKHTYVPVTK----KGYWQFELGDILIGN-QSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECK  227 (412)
Q Consensus       153 ~~~~g~l~~~p~~~----~~~w~v~~~~i~v~~-~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~  227 (412)
                      ++|+|++.|+|+.+    ..+|.|. .+|.+++ +.+.   .+..++|||||+++++|.+++++|.+.+++..       
T Consensus       168 ~~~~g~l~~~p~~~~~~~~~~w~v~-~~i~v~~~~~l~---~~~~aiiDSGTt~~~lP~~~~~~l~~~~~a~~-------  236 (340)
T 1wkr_A          168 SKYTGSITYTPITSTSPASAYWGIN-QSIRYGSSTSIL---SSTAGIVDTGTTLTLIASDAFAKYKKATGAVA-------  236 (340)
T ss_dssp             GGCSSCCEEEECCSSTTGGGSSEEE-EEEEETTTEEEE---EEEEEEECTTBCSEEECHHHHHHHHHHHTCEE-------
T ss_pred             hhcccceEEEECccCCCCcceEEEE-eeEEECCCeEcc---CCCeEEEeCCcccccCCHHHHHHHHHhhCCEE-------
Confidence            99999999999987    7899999 9999998 7763   24579999999999999999999998887641       


Q ss_pred             hhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHH
Q 015145          228 LVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKE  307 (412)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  307 (412)
                                                                                                      
T Consensus       237 --------------------------------------------------------------------------------  236 (340)
T 1wkr_A          237 --------------------------------------------------------------------------------  236 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEecc-----ccccceeeeeeeccCCCCCC
Q 015145          308 KVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGE-----GIAEVCISGFMAFDLPPPRG  382 (412)
Q Consensus       308 ~~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~-----~~~~~C~~~i~~~~~~~~~~  382 (412)
                                   ....+.|.+||+....+|+|+|.|+|++++|+|++|+++...     +....|++.+...+.+...+
T Consensus       237 -------------~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~i~~~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~  303 (340)
T 1wkr_A          237 -------------DNNTGLLRLTTAQYANLQSLFFTIGGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEG  303 (340)
T ss_dssp             -------------CTTTSSEEECHHHHHTCCCEEEEETTEEEEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSS
T ss_pred             -------------cCCCCeEEeeccccccCCcEEEEECCEEEEEcHHHhccccccccccCCCCceEEEEEecCCCCCCCC
Confidence                         123457899998777899999999999999999999987542     12358998888654332334


Q ss_pred             CcEEEccccccceEEEEeCCCCeEEEEecC
Q 015145          383 PLWILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       383 ~~~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      +.||||++|||++|+|||++++|||||+++
T Consensus       304 ~~~iLG~~fl~~~y~vfD~~~~~igfA~~~  333 (340)
T 1wkr_A          304 LDFINGLTFLERFYSVYDTTNKRLGLATTS  333 (340)
T ss_dssp             CCEEECHHHHTSEEEEEETTTTEEEEEECT
T ss_pred             cceEeChHhhhheEEEEeCCCCeEEEEecC
Confidence            679999999999999999999999999975

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}

Probab=100.00  E-value=2.4e-48  Score=392.64  Aligned_cols=309  Identities=23%  Similarity=0.383  Sum_probs=246.9

Q ss_pred             cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEE-e-eeEE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVV-K-DQVF   79 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~-~-~~~f   79 (412)
                      +|||+|.+.+..||||+++||++..-|..|+.|+|++|+|++..++.|+++|++|++.|.+++|+|++++... . .+.|
T Consensus        21 iGTP~q~~~v~~DTGSs~lWv~~~~c~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~i~~~~~~~~~~~~  100 (383)
T 2ewy_A           21 IGTPPQKLQILVDTGSSNFAVAGTPHSYIDTYFDTERSSTYRSKGFDVTVKYTQGSWTGFVGEDLVTIPKGFNTSFLVNI  100 (383)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEECSCBTTBSCCCCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCCceEEEEEecCCCceEEecCCCCccccCcccccCccceeCCceEEEEECCcEEEEEEEEEEEEECCCccceeEEEE
Confidence            6899999999999999999999975445678999999999999999999999999999999999999986332 2 3567


Q ss_pred             EEEEeecCcccccCCccEEEeccCCcccc--CCCCchHHHHHHcCCCCCCeEEEEecCC-----CCCCCCcEEEeCCCCC
Q 015145           80 IEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRD-----PDAEEGGEIVFGGVDP  152 (412)
Q Consensus        80 g~~~~~~~~~~~~~~~dGilGLg~~~~s~--~~~~~~~~~L~~qg~i~~~~Fsl~l~~~-----~~~~~~G~l~fGg~D~  152 (412)
                      +++....+.......++||||||++.++.  ....+++++|++|+.| +++||+||++.     .+....|.|+|||+|+
T Consensus       101 ~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~~q~~i-~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~  179 (383)
T 2ewy_A          101 ATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVTQANI-PNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEP  179 (383)
T ss_dssp             EEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHHTC-CSCEEEEECCC---------CCEEEEETSCCG
T ss_pred             EEEEeecceeeccCcCceEEecCchhcccccccccCHHHHHHHccCC-CcceEEEeeccccccccCCCCCeEEEeCccch
Confidence            77765443222235679999999998765  4578899999999999 79999999752     1233589999999999


Q ss_pred             CCeecCceEeeccccceeEEEEceEEECCeeeceecC---CceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhh
Q 015145          153 KHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEG---GCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLV  229 (412)
Q Consensus       153 ~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~---~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~  229 (412)
                      +++.|++.|+|+.+..+|.|.+++|+++++.+.+...   ...++|||||+++++|.+++++|.+++++....       
T Consensus       180 ~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~-------  252 (383)
T 2ewy_A          180 SLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLI-------  252 (383)
T ss_dssp             GGCCSCEEEEECSSBTTBBCCEEEEEETTEECCCCTTTTTSSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCS-------
T ss_pred             hhccCccEEEecCCCceEEEEEEEEEECCEEccccccccCCccEEEEcCCccccCCHHHHHHHHHHHhhhccc-------
Confidence            9999999999999999999999999999998754222   468999999999999999999999999654100       


Q ss_pred             hhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHH
Q 015145          230 VSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKV  309 (412)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  309 (412)
                       .                                                                              
T Consensus       253 -~------------------------------------------------------------------------------  253 (383)
T 2ewy_A          253 -P------------------------------------------------------------------------------  253 (383)
T ss_dssp             -S------------------------------------------------------------------------------
T ss_pred             -c------------------------------------------------------------------------------
Confidence             0                                                                              


Q ss_pred             HHHhhhhccCCCCC-CCceeeeCCCCC-----CCCcEEEEECC------EEEEeCcccceEEecc-ccccceee-eeeec
Q 015145          310 LSYINELCDSLPNP-MGESIIDCDRIP-----TMPNVSFTIGD------KIFNLSPEQYILKTGE-GIAEVCIS-GFMAF  375 (412)
Q Consensus       310 ~~~~~~~c~~~~~~-~~~~~ipC~~~~-----~lp~l~f~~gg------~~~~i~p~~yl~~~~~-~~~~~C~~-~i~~~  375 (412)
                               ..+.. ...+.++|....     .+|+|+|+|+|      .+++|+|++|+++..+ .....|+. .+...
T Consensus       254 ---------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~C~~~~i~~~  324 (383)
T 2ewy_A          254 ---------EFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQLYIQPMMGAGLNYECYRFGISPS  324 (383)
T ss_dssp             ---------CCCHHHHHTSEEEEECSSSCGGGGSCCEEEEEECSSTTEEEEEEECHHHHEEEECCCTTCSEEEEESEEEE
T ss_pred             ---------cCccccccccccccccCCcccHhhCCcEEEEECCCCCCceEEEEEChHHheeecccCCCCceeEEEEecCC
Confidence                     00000 012456786542     58999999976      4899999999987642 23457985 55432


Q ss_pred             cCCCCCCCcEEEccccccceEEEEeCCCCeEEEEecC
Q 015145          376 DLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       376 ~~~~~~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                            .+.||||++|||++|+|||++++|||||+++
T Consensus       325 ------~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~  355 (383)
T 2ewy_A          325 ------TNALVIGATVMEGFYVIFDRAQKRVGFAASP  355 (383)
T ss_dssp             ------SSCEEECHHHHTTEEEEEETTTTEEEEEECT
T ss_pred             ------CCcEEEChHHhCCeeEEEECCCCeEEEEecc
Confidence                  2579999999999999999999999999974

>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...

Probab=100.00  E-value=1.5e-48  Score=396.87  Aligned_cols=309  Identities=23%  Similarity=0.331  Sum_probs=250.4

Q ss_pred             cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECC-eEEee-eEE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGD-VVVKD-QVF   79 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~-~~~~~-~~f   79 (412)
                      +|||+|.+.+..||||+++||++.+.|..|+.|+|++|+|++..++.|.+.|++|++.|.+++|+|++++ ..+.. +.|
T Consensus        36 iGTP~q~~~v~~DTGSs~lWv~~~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ig~~~~~~~~~~~  115 (402)
T 3vf3_A           36 VGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANI  115 (402)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEECTTSCSCEEEEEE
T ss_pred             ECCCCeEEEEEEeCCCCceEEccCCCCcccCCcCcccCcccccCCCEEEEEECcEEEEEEEEEEEEEECCccccceeeeE
Confidence            6899999999999999999999998888999999999999999999999999999999999999999984 44443 347


Q ss_pred             EEEEeecCcccccCCccEEEeccCCccccC--CCCchHHHHHHcCCCCCCeEEEEecCCC-----C---CCCCcEEEeCC
Q 015145           80 IEATREGSLTFLLARFDGIIGLGFREIAVG--DAVPVWDNMVEQGLVSEEVFSFWLNRDP-----D---AEEGGEIVFGG  149 (412)
Q Consensus        80 g~~~~~~~~~~~~~~~dGilGLg~~~~s~~--~~~~~~~~L~~qg~i~~~~Fsl~l~~~~-----~---~~~~G~l~fGg  149 (412)
                      +++....+.......++||||||++.++..  ...+++++|++||+|. ++||+||++..     .   ....|.|+|||
T Consensus       116 ~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~~q~~i~-~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg  194 (402)
T 3vf3_A          116 AAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGG  194 (402)
T ss_dssp             EEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCC-SCEEEEECCCC-------------EEEEESS
T ss_pred             EEEEccccccccCCCccceEEcCchhhcccCCcCCcHHHHHHHccCCc-cceEEEeecccccccccccccCCCCEEEeCC
Confidence            777665443223467899999999988764  3788999999999997 99999997531     1   33589999999


Q ss_pred             CCCCCeecCceEeeccccceeEEEEceEEECCeeeceec---CCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecch
Q 015145          150 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCE---GGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAEC  226 (412)
Q Consensus       150 ~D~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~---~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~  226 (412)
                      +|+++|.|++.|+|+.+..+|.|.+++|.++++.+.+..   ....++|||||+++++|.+++++|.+++++...     
T Consensus       195 ~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~-----  269 (402)
T 3vf3_A          195 IDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASS-----  269 (402)
T ss_dssp             CCGGGEEEEEEEEECSSBTTBEECEEEEEETTEECCCCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTT-----
T ss_pred             cCcccccCceEEEeCCcCcEEEEEEeEEEECCEEecccccccCCCeEEEECCCCcccCCHHHHHHHHHHHhhhcc-----
Confidence            999999999999999999999999999999999876422   256799999999999999999999999965410     


Q ss_pred             hhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhH
Q 015145          227 KLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTK  306 (412)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  306 (412)
                                     .                                                                
T Consensus       270 ---------------~----------------------------------------------------------------  270 (402)
T 3vf3_A          270 ---------------T----------------------------------------------------------------  270 (402)
T ss_dssp             ---------------T----------------------------------------------------------------
T ss_pred             ---------------c----------------------------------------------------------------
Confidence                           0                                                                


Q ss_pred             HHHHHHhhhhccCCCCC-CCceeeeCCCCC-----CCCcEEEEECCE------EEEeCcccceEEecccc--ccceee-e
Q 015145          307 EKVLSYINELCDSLPNP-MGESIIDCDRIP-----TMPNVSFTIGDK------IFNLSPEQYILKTGEGI--AEVCIS-G  371 (412)
Q Consensus       307 ~~~~~~~~~~c~~~~~~-~~~~~ipC~~~~-----~lp~l~f~~gg~------~~~i~p~~yl~~~~~~~--~~~C~~-~  371 (412)
                                 ...+.. ...|.++|....     .+|+|+|+|+|.      +++|+|++|+++.....  ...|+. .
T Consensus       271 -----------~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~~~  339 (402)
T 3vf3_A          271 -----------EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFA  339 (402)
T ss_dssp             -----------SCCCTTGGGTCSCEEEETTCCCGGGSCCEEEEEECSSTTEEEEEEECHHHHEEECCCGGGTTEEEEEEC
T ss_pred             -----------cccCccccccccccccccccchHhhCCceEEEEecCCCCceEEEEECHHHheehhccCCCCCceEEEEe
Confidence                       000000 012357887655     589999999874      59999999999865432  247995 4


Q ss_pred             eeeccCCCCCCCcEEEccccccceEEEEeCCCCeEEEEecC
Q 015145          372 FMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       372 i~~~~~~~~~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      +..      ..+.||||++|||++|+|||++++|||||+++
T Consensus       340 ~~~------~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~  374 (402)
T 3vf3_A          340 ISQ------SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSA  374 (402)
T ss_dssp             EEE------ESSCEEECHHHHTTEEEEEEGGGTEEEEEEET
T ss_pred             ccC------CCCcEEEChHHhCCeEEEEECCCCEEEEEecc
Confidence            432      23579999999999999999999999999974

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*

Probab=100.00  E-value=3e-48  Score=401.38  Aligned_cols=309  Identities=23%  Similarity=0.327  Sum_probs=253.1

Q ss_pred             cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECC-eEEe-eeEE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGD-VVVK-DQVF   79 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~-~~~~-~~~f   79 (412)
                      +|||+|.+.+..||||+++||++.+.|..|+.|+|++|+|++..++.|.+.|++|++.|.+++|+|+|++ ..+. .+.|
T Consensus        82 iGTP~Q~~~v~~DTGSs~lWV~~~~cc~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~ig~~~~~~~~~~~  161 (455)
T 3lpj_A           82 VGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANI  161 (455)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEECTTSCSCEEEEEE
T ss_pred             ECCCCeEEEEEEcCCCcceEEecccccccCCcccCCCCCCcccCCccEEEEeCCeEEEEEEEEEEEEECCCcceeeEEEE
Confidence            6899999999999999999999998899999999999999999999999999999999999999999984 2222 3568


Q ss_pred             EEEEeecCcccccCCccEEEeccCCccccC--CCCchHHHHHHcCCCCCCeEEEEecCCCC--------CCCCcEEEeCC
Q 015145           80 IEATREGSLTFLLARFDGIIGLGFREIAVG--DAVPVWDNMVEQGLVSEEVFSFWLNRDPD--------AEEGGEIVFGG  149 (412)
Q Consensus        80 g~~~~~~~~~~~~~~~dGilGLg~~~~s~~--~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~--------~~~~G~l~fGg  149 (412)
                      +++............++||||||++.++..  ...+++++|++|++|. ++||+||++...        ....|.|+|||
T Consensus       162 ~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~~q~~i~-~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg  240 (455)
T 3lpj_A          162 AAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGG  240 (455)
T ss_dssp             EEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCC-SCEEEEECCCSSCCCHHHHHHSCCEEEEETS
T ss_pred             EEEEccCcccccCCCcceEEEeCccccccccCCCCcHHHHHHHccCCC-ceeEEEeccccccccccccccCCCceEEECC
Confidence            888776543333467899999999988764  3788999999999997 999999986421        23489999999


Q ss_pred             CCCCCeecCceEeeccccceeEEEEceEEECCeeeceec---CCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecch
Q 015145          150 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCE---GGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAEC  226 (412)
Q Consensus       150 ~D~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~---~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~  226 (412)
                      +|+++|.|++.|+|+.+..+|.|.+++|.++++.+.+..   ....++|||||+++++|.+++++|.+++++...     
T Consensus       241 ~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~-----  315 (455)
T 3lpj_A          241 IDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASS-----  315 (455)
T ss_dssp             CCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCEEECTTSSSEEEEHHHHHHHHHHHHHHTT-----
T ss_pred             cCcccccCceEEEecCCCceeEEEEeEEEECCEEccccccccCCCeEEEECCCcceeCCHHHHHHHHHHhhhhcc-----
Confidence            999999999999999999999999999999999876422   256899999999999999999999999965410     


Q ss_pred             hhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhH
Q 015145          227 KLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTK  306 (412)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  306 (412)
                         ..                                                                           
T Consensus       316 ---~~---------------------------------------------------------------------------  317 (455)
T 3lpj_A          316 ---TE---------------------------------------------------------------------------  317 (455)
T ss_dssp             ---TS---------------------------------------------------------------------------
T ss_pred             ---cc---------------------------------------------------------------------------
Confidence               00                                                                           


Q ss_pred             HHHHHHhhhhccCCCC-CCCceeeeCCCCCC-----CCcEEEEECCE------EEEeCcccceEEecccc--ccceee-e
Q 015145          307 EKVLSYINELCDSLPN-PMGESIIDCDRIPT-----MPNVSFTIGDK------IFNLSPEQYILKTGEGI--AEVCIS-G  371 (412)
Q Consensus       307 ~~~~~~~~~~c~~~~~-~~~~~~ipC~~~~~-----lp~l~f~~gg~------~~~i~p~~yl~~~~~~~--~~~C~~-~  371 (412)
                                  .+.. ....|.++|.....     +|+|+|+|+|.      +++|+|++|+++..+..  ...|+. .
T Consensus       318 ------------~~~~~~~~g~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~f~  385 (455)
T 3lpj_A          318 ------------KFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFA  385 (455)
T ss_dssp             ------------CCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEEEEEECHHHHEEEECCTTCCSCEEEEEC
T ss_pred             ------------ccCcccccCcceecccccCCchhcCCcEEEEEcCCCcCceEEEEECHHHheEeccCCCCCCceEEEEe
Confidence                        0000 00123578876654     89999999875      59999999999865432  258996 3


Q ss_pred             eeeccCCCCCCCcEEEccccccceEEEEeCCCCeEEEEecC
Q 015145          372 FMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       372 i~~~~~~~~~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      +..      ..+.||||++|||++|+|||++++|||||+++
T Consensus       386 ~~~------~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~  420 (455)
T 3lpj_A          386 ISQ------SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSA  420 (455)
T ss_dssp             EEE------ESSCEEECHHHHTTEEEEEETTTTEEEEEEET
T ss_pred             ccC------CCCcEEEChHHhCCeEEEEECCCCEEEEEecc
Confidence            332      23679999999999999999999999999974

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...

Probab=100.00  E-value=6.4e-48  Score=391.54  Aligned_cols=309  Identities=23%  Similarity=0.321  Sum_probs=247.6

Q ss_pred             cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEEC-CeEEe-eeEE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVG-DVVVK-DQVF   79 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg-~~~~~-~~~f   79 (412)
                      +|||+|.+.+..||||+++||++..-|..|+.|+|++|+|++..++.|+++|++|++.|.+++|+|+++ +..+. .+.|
T Consensus        29 iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~ig~g~~~~~~~~~  108 (395)
T 2qp8_A           29 VGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANI  108 (395)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEECTTSCSCEEEEEE
T ss_pred             ecCCCceEEEEEecCCCceEEECCCCccccCCcCcccCCCceeCCceEEEEECCcEEEEEEEeEEEEECCCCCceEEEEE
Confidence            689999999999999999999998655668899999999999999999999999999999999999998 44443 2567


Q ss_pred             EEEEeecCcccccCCccEEEeccCCccccC--CCCchHHHHHHcCCCCCCeEEEEecCCC--------CCCCCcEEEeCC
Q 015145           80 IEATREGSLTFLLARFDGIIGLGFREIAVG--DAVPVWDNMVEQGLVSEEVFSFWLNRDP--------DAEEGGEIVFGG  149 (412)
Q Consensus        80 g~~~~~~~~~~~~~~~dGilGLg~~~~s~~--~~~~~~~~L~~qg~i~~~~Fsl~l~~~~--------~~~~~G~l~fGg  149 (412)
                      +++....+.......++||||||++.++..  ...+++++|++|+.|. ++||+||++..        .....|.|+|||
T Consensus       109 ~~~~~~~~~f~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~l~~q~~i~-~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg  187 (395)
T 2qp8_A          109 AAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGG  187 (395)
T ss_dssp             EEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCC-SCEEEEECCCSSCCCHHHHHHSCCEEEEETS
T ss_pred             EEEEccCcccccccCccceEEcCchhhccCCCCCCCHHHHHHHccCCc-ceEEEEeccccccccccccccCCCcEEEECC
Confidence            777654332212457799999999987643  4788999999999996 89999998641        013489999999


Q ss_pred             CCCCCeecCceEeeccccceeEEEEceEEECCeeeceec---CCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecch
Q 015145          150 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCE---GGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAEC  226 (412)
Q Consensus       150 ~D~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~---~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~  226 (412)
                      +|++++.|++.|+|+.+..+|.|.+++|+|+++.+.+..   ....++|||||+++++|.+++++|.+++++...     
T Consensus       188 ~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~-----  262 (395)
T 2qp8_A          188 IDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASS-----  262 (395)
T ss_dssp             CCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTT-----
T ss_pred             cCcccccCceEEeccCCCceEEEEEEEEEECCEEcccCccccCCceEEEEcCCCcEecCHHHHHHHHHHHhhhcc-----
Confidence            999999999999999999999999999999999875422   236799999999999999999999999865410     


Q ss_pred             hhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhH
Q 015145          227 KLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTK  306 (412)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  306 (412)
                         ..+                                                                          
T Consensus       263 ---~~~--------------------------------------------------------------------------  265 (395)
T 2qp8_A          263 ---TEK--------------------------------------------------------------------------  265 (395)
T ss_dssp             ---TSC--------------------------------------------------------------------------
T ss_pred             ---ccc--------------------------------------------------------------------------
Confidence               000                                                                          


Q ss_pred             HHHHHHhhhhccCCCC-CCCceeeeCCCCC-----CCCcEEEEECCE------EEEeCcccceEEecc--cccccee-ee
Q 015145          307 EKVLSYINELCDSLPN-PMGESIIDCDRIP-----TMPNVSFTIGDK------IFNLSPEQYILKTGE--GIAEVCI-SG  371 (412)
Q Consensus       307 ~~~~~~~~~~c~~~~~-~~~~~~ipC~~~~-----~lp~l~f~~gg~------~~~i~p~~yl~~~~~--~~~~~C~-~~  371 (412)
                                   .+. ....+.++|....     .+|+|+|+|+|.      +++|+|++|+++..+  .+...|+ ++
T Consensus       266 -------------~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~l~p~~yi~~~~~~~~~~~~C~~~~  332 (395)
T 2qp8_A          266 -------------FPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFA  332 (395)
T ss_dssp             -------------CCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEEEEEECHHHHEEEECCTTCCSCEEEEEC
T ss_pred             -------------CCccccccccccccccccchHhhCCcEEEEEccCCCCceEEEEECHHHhEeecccCCCCCceEEEEE
Confidence                         000 0011345776544     489999999764      799999999998653  2335897 46


Q ss_pred             eeeccCCCCCCCcEEEccccccceEEEEeCCCCeEEEEecC
Q 015145          372 FMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       372 i~~~~~~~~~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      +...      .+.||||++|||++|+|||++++|||||+++
T Consensus       333 i~~~------~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~  367 (395)
T 2qp8_A          333 ISQS------STGTVMGAVIMEGFYVVFDRARKRIGFAVSA  367 (395)
T ss_dssp             EEEE------SSCEEECHHHHTTEEEEEETTTTEEEEEEET
T ss_pred             ecCC------CCcEEEChHHhCCeeEEEECCCCEEEEEecc
Confidence            6532      2579999999999999999999999999974

>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*

Probab=100.00  E-value=1.2e-44  Score=343.51  Aligned_cols=241  Identities=49%  Similarity=0.957  Sum_probs=211.6

Q ss_pred             CCeEEeeeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCC
Q 015145           70 GDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGG  149 (412)
Q Consensus        70 g~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg  149 (412)
                      |+++++++.|||++.+.+..|....++||||||++.++.....+++++|++||+|.+++||+||.+..+....|+|+|||
T Consensus         1 gg~~v~~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg   80 (241)
T 1lya_B            1 GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGG   80 (241)
T ss_dssp             CCEEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETS
T ss_pred             CCeEECCeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECC
Confidence            57889999999999886666767788999999999887767789999999999999999999999875444589999999


Q ss_pred             CCCCCeecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhh
Q 015145          150 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLV  229 (412)
Q Consensus       150 ~D~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~  229 (412)
                      +|+++|+|++.|+|+.+..+|.|.+++|+++++.+ .+.....+++||||+++++|.+++++|.+++++..         
T Consensus        81 ~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~-~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~---------  150 (241)
T 1lya_B           81 TDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLT-LCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVP---------  150 (241)
T ss_dssp             CCGGGEEEEEEEEECSSBTTBEEEEEEEEETTSCE-ESTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE---------
T ss_pred             cCHHHcCCceEEEECccccEEEEEEeEEEECCeeE-eccCCCEEEEECCCccccCCHHHHHHHHHHhCCee---------
Confidence            99999999999999999999999999999999875 24567899999999999999999999999997641         


Q ss_pred             hhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHH
Q 015145          230 VSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKV  309 (412)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  309 (412)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (241)
T 1lya_B          151 --------------------------------------------------------------------------------  150 (241)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEcc
Q 015145          310 LSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGD  389 (412)
Q Consensus       310 ~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~  389 (412)
                                  ...+.|.++|+....+|+|+|.|+|++++|+|++|+++....+...|+++|+..+.+....+.||||+
T Consensus       151 ------------~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~  218 (241)
T 1lya_B          151 ------------LIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGD  218 (241)
T ss_dssp             ------------EETTEEEEEGGGGGGSCCEEEEETTEEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEECH
T ss_pred             ------------ccCCcEEEECCCCccCCeEEEEECCEEEEECHHHhEEEccCCCCCeeEEEEEecccCCCCCCeEEech
Confidence                        11356889999888899999999999999999999998764445689999988765434567999999


Q ss_pred             ccccceEEEEeCCCCeEEEEecC
Q 015145          390 VFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       390 ~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      +|||++|+|||++++|||||+++
T Consensus       219 ~fl~~~y~vfD~~~~~igfA~~~  241 (241)
T 1lya_B          219 VFIGRYYTVFDRDNNRVGFAEAA  241 (241)
T ss_dssp             HHHTTEEEEEETTTTEEEEEEEC
T ss_pred             HHhcceEEEEECCCCEEEEEEcC
Confidence            99999999999999999999986

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}

Probab=100.00  E-value=2.1e-45  Score=374.34  Aligned_cols=302  Identities=17%  Similarity=0.201  Sum_probs=235.7

Q ss_pred             cccccceeeecCccCccceEEecCC----------C-----CCCCCCC------CCCCCCceEECCcEEEEEEc-Cce-E
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVP----------I-----SGFHLQS------AISLFPAISIRGKSCEINYG-SGS-I   58 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~----------~-----c~~~~~y------~p~~Sst~~~~~~~~~i~Y~-~gs-~   58 (412)
                      +|||+|.+.+..||||+++||+|.+          .     |..+..|      ++..|+ +....+.|.+.|+ +|+ +
T Consensus        29 iGTP~Q~~~v~~DTGSs~lWv~~~~~~~Sst~~~~~C~s~~C~~~~~~~c~~c~~~~~s~-~~~~~~~~~~~Y~~d~~~~  107 (403)
T 3aup_A           29 KRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCLSCPAASRPG-CHKNTCGLMSTNPITQQTG  107 (403)
T ss_dssp             ETTTTEEEEEEEETTCSSEEEECSSCCCCSSCBCCCTTBHHHHHTTCCCEEECSSSCBTT-BCSSEEEEEEEETTTTEEE
T ss_pred             CCCCCceeEEEEECCCCceeECCCCCCCCCCCCccCCCCccccCccccCccccCCCCCCC-CCCCcceeEeecCCCCcee
Confidence            6899999999999999999999872          3     4556777      555443 4456678999998 555 8


Q ss_pred             EEEEEEEEEEECC-----------eEEeeeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCC
Q 015145           59 SGFFSQDNVEVGD-----------VVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEE  127 (412)
Q Consensus        59 ~G~~~~D~v~lg~-----------~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~  127 (412)
                      .|.+++|+|++++           ..+.++.|||+.......+.....+||||||++.++      +..+|. ++++.++
T Consensus       108 ~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~-~~~~~~~  180 (403)
T 3aup_A          108 LGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPIS------LPNQLA-SHFGLQR  180 (403)
T ss_dssp             EEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSSTTCCEEEECSSSTTS------HHHHHH-HHHTCCS
T ss_pred             eEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCCCCCceEEECCCCCcC------HHHHHH-hhcCCCC
Confidence            9999999999987           789999999998764322445678999999998776      777875 4557789


Q ss_pred             eEEEEecCCCCCCCCcEEEeCCCCCCCe--e-c-----CceEeecccc--ceeEEEEceEEECCeee-ceecC-------
Q 015145          128 VFSFWLNRDPDAEEGGEIVFGGVDPKHF--K-G-----KHTYVPVTKK--GYWQFELGDILIGNQST-GVCEG-------  189 (412)
Q Consensus       128 ~Fsl~l~~~~~~~~~G~l~fGg~D~~~~--~-g-----~l~~~p~~~~--~~w~v~~~~i~v~~~~~-~~~~~-------  189 (412)
                      +||+||.+..  ...|.|+||| |+++|  + |     ++.|+|+.+.  ++|.|.+++|.|+++.+ .+...       
T Consensus       181 ~FS~~L~~~~--~~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~~~~~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~  257 (403)
T 3aup_A          181 QFTTCLSRYP--TSKGAIIFGD-APNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISSTIVGS  257 (403)
T ss_dssp             EEEEECCSCT--TSCEEEEESC-HHHHC--CTTCCTTTTEEEEECEECTTSCEEECEEEEEETTEEEECC----------
T ss_pred             eEEEEcCCCC--CCCeeEEECC-CchhccccccccccCceeecccccCCCCcceEEEEEEEECCEEcccCChhHeeeccC
Confidence            9999998752  2489999999 99888  6 6     9999999766  89999999999999887 43222       


Q ss_pred             -CceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccc
Q 015145          190 -GCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTG  268 (412)
Q Consensus       190 -~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~  268 (412)
                       ...++|||||+++++|++++++|.+++.+.-  .        .+             +.                    
T Consensus       258 g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~--~--------~~-------------~~--------------------  294 (403)
T 3aup_A          258 TSGGTMISTSTPHMVLQQSVYQAFTQVFAQQL--P--------KQ-------------AQ--------------------  294 (403)
T ss_dssp             --CCEEECSSCSSEEECHHHHHHHHHHHHHTS--C--------GG-------------GE--------------------
T ss_pred             CCCCEEEECCCccEEeCHHHHHHHHHHHHHHh--c--------cc-------------cc--------------------
Confidence             2249999999999999999999999884320  0        00             00                    


Q ss_pred             eeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECC--
Q 015145          269 IKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGD--  346 (412)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg--  346 (412)
                          .                                              -+.....+.++|+.+..+|+|+|.|+|  
T Consensus       295 ----~----------------------------------------------~~~~~~~~c~~c~~~~~~P~i~f~f~g~~  324 (403)
T 3aup_A          295 ----V----------------------------------------------KSVAPFGLCFNSNKINAYPSVDLVMDKPN  324 (403)
T ss_dssp             ----E----------------------------------------------CCCTTCSCEECGGGCCCCCCEEEEESSTT
T ss_pred             ----c----------------------------------------------CCCCCCCceEECCCcCcCCcEEEEEcCCC
Confidence                0                                              001123477899887789999999987  


Q ss_pred             -EEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEEEEeCCCCeEEE-EecC
Q 015145          347 -KIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGF-AEAA  412 (412)
Q Consensus       347 -~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yvvfD~e~~rIGf-a~~~  412 (412)
                       ++++|+|++|+++..  +...|+ +|...+.  ...+.||||+.|||++|+|||++++|||| |+++
T Consensus       325 ~~~~~l~~~~y~~~~~--~~~~C~-~~~~~~~--~~~~~~ILG~~fl~~~yvvfD~~~~rIGf~A~~~  387 (403)
T 3aup_A          325 GPVWRISGEDLMVQAQ--PGVTCL-GVMNGGM--QPRAEITLGARQLEENLVVFDLARSRVGFSTSSL  387 (403)
T ss_dssp             CCEEEECHHHHEEEC-----CEEE-CEEECCS--CCSSSEEECHHHHTTSCEEEETTTTEEEEESSCG
T ss_pred             ceEEEEcccceEEEcC--CCeEEE-EEEcCCC--CCCCcEEEChHHhcCeEEEEECCCCEEEEecccc
Confidence             499999999999754  345899 7876532  12468999999999999999999999999 8763

>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A

Probab=100.00  E-value=1.1e-44  Score=370.94  Aligned_cols=301  Identities=15%  Similarity=0.146  Sum_probs=234.6

Q ss_pred             cccccceeeecCccCccceEEecC---------------CCCCCCCCCCCCC-----CCceEECCcEEEEEEc-Cce-EE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV---------------PISGFHLQSAISL-----FPAISIRGKSCEINYG-SGS-IS   59 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~---------------~~c~~~~~y~p~~-----Sst~~~~~~~~~i~Y~-~gs-~~   59 (412)
                      +|||+|.+-+..||||+++||||.               ..|..|..|++..     ++++...++.|.+.|+ +|+ ..
T Consensus        28 iGTPpq~~~v~~DTGS~~lWv~c~~c~~Sst~~~v~C~s~~C~~~~~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~  107 (413)
T 3vla_A           28 QRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATG  107 (413)
T ss_dssp             ETTTTEEEEEEEETTCSSEEEECSSSCCCTTCEECBTTSHHHHHTTCCEEECCSSCCBTTBCSSEEEECCEETTTTEECC
T ss_pred             cCCCCcceEEEEeCCChhhhcccCCCCCCCCcCccCCCcccccccccCCCcccccCCCCCCCCCcCcceeecCcCCceee
Confidence            689999999999999999999984               2355677787642     3455556689999994 665 79


Q ss_pred             EEEEEEEEEEC---------CeEEeeeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEE
Q 015145           60 GFFSQDNVEVG---------DVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFS  130 (412)
Q Consensus        60 G~~~~D~v~lg---------~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fs  130 (412)
                      |++++|+|+|+         ++.+.++.|||+..+... .....++||||||+..++      +..||.+++++ +++||
T Consensus       108 G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~-g~~~~~dGIlGLg~~~lS------l~sql~~~~~i-~~~FS  179 (413)
T 3vla_A          108 GEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQ-NLASGVVGMAGLGRTRIA------LPSQFASAFSF-KRKFA  179 (413)
T ss_dssp             EEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGT-TSCTTCCEEEECSSSSSS------HHHHHHHHHTC-CSEEE
T ss_pred             eEEEEEEEEecccCCCCcccceeeCCEEEECccccccc-CcccccccccccCCCCcc------hHHHHhhhcCC-CceEE
Confidence            99999999996         267889999999976322 123568999999999887      88999999988 89999


Q ss_pred             EEecCCCCCCCCcEEEeCCCCCCC-----eecC-ceEeecccc--------------ceeEEEEceEEECCeeeceec--
Q 015145          131 FWLNRDPDAEEGGEIVFGGVDPKH-----FKGK-HTYVPVTKK--------------GYWQFELGDILIGNQSTGVCE--  188 (412)
Q Consensus       131 l~l~~~~~~~~~G~l~fGg~D~~~-----~~g~-l~~~p~~~~--------------~~w~v~~~~i~v~~~~~~~~~--  188 (412)
                      +||.+..  ...|.|+|||.|..+     +.|+ +.|+|+.+.              .+|.|.+++|+|+++.+.+..  
T Consensus       180 ~cL~~~~--~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~~~~~y~V~l~~IsVgg~~l~~~~~~  257 (413)
T 3vla_A          180 MCLSGST--SSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSL  257 (413)
T ss_dssp             EECCSCS--SSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTCCCCSCEECCCEEEETTEEECCCGGG
T ss_pred             EeCCCCC--CCceEEEECCCcccccccccccCCceeEeecccCCccccccccccCCCceEEEEEEEEEECCEEccCCchh
Confidence            9999842  348999999998753     7888 999999765              699999999999999886432  


Q ss_pred             ------CCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCc
Q 015145          189 ------GGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGA  262 (412)
Q Consensus       189 ------~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~  262 (412)
                            ....+||||||+++++|.++|++|.+++.+.-          .          ..++. .              
T Consensus       258 ~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~----------~----------~~~~~-~--------------  302 (413)
T 3vla_A          258 LSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKES----------A----------ARNIT-R--------------  302 (413)
T ss_dssp             TSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHH----------H----------HTTCC-E--------------
T ss_pred             cccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHh----------c----------ccCCC-c--------------
Confidence                  34679999999999999999999999985430          0          00000 0              


Q ss_pred             ceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCCCCceeeeCCCC--------
Q 015145          263 EYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI--------  334 (412)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~ipC~~~--------  334 (412)
                                                                               . . ...+..+|...        
T Consensus       303 ---------------------------------------------------------~-~-~~~~~~~C~~~~~~~~~~~  323 (413)
T 3vla_A          303 ---------------------------------------------------------V-A-SVAPFGACFSTDNILSTRL  323 (413)
T ss_dssp             ---------------------------------------------------------E-C-CCTTCSCEEECTTCCEETT
T ss_pred             ---------------------------------------------------------C-C-CCCCCcceeccCCcccccc
Confidence                                                                     0 0 00111234332        


Q ss_pred             -CCCCcEEEEECC--EEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEEEEeCCCCeEEEEec
Q 015145          335 -PTMPNVSFTIGD--KIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA  411 (412)
Q Consensus       335 -~~lp~l~f~~gg--~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~  411 (412)
                       ..+|+|+|+|+|  ++|+|+|++|+++..+  ...|+ ++...+.  ..++.||||+.|||++|+|||++++|||||++
T Consensus       324 ~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~--~~~Cl-~~~~~~~--~~~~~~IlGd~fl~~~~vvfD~~~~riGfa~~  398 (413)
T 3vla_A          324 GPSVPSIDLVLQSESVVWTITGSNSMVYIND--NVVCL-GVVDGGS--NLRTSIVIGGHQLEDNLVQFDLATSRVGFSGT  398 (413)
T ss_dssp             EECCCCEEEECSSTTCEEEECHHHHEEEEET--TEEEE-CEEEEES--SCSSSEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCcEEEEEcCCcEEEEeCccceEEEeCC--CcEEE-EEEecCC--CcccceeEehhhhcCeEEEEECCCCEEEEEEe
Confidence             378999999987  9999999999998543  35797 5665432  12468999999999999999999999999986

>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A

Probab=100.00  E-value=6.6e-43  Score=353.47  Aligned_cols=306  Identities=16%  Similarity=0.159  Sum_probs=219.4

Q ss_pred             cccceee--ecCccCccceEEecC-------C-----CCCCCCCCCCCCCCce------EECCc-EEEEEEcCce-EEEE
Q 015145            4 TLERLVL--ALPHKISVSYLIPAV-------P-----ISGFHLQSAISLFPAI------SIRGK-SCEINYGSGS-ISGF   61 (412)
Q Consensus         4 t~~~~~~--~~p~t~s~~~wvp~~-------~-----~c~~~~~y~p~~Sst~------~~~~~-~~~i~Y~~gs-~~G~   61 (412)
                      ..++.||  +..||||+++||+|.       .     .|..|+.|++..++..      ....+ .|.++|++|+ +.|.
T Consensus        17 ~~~i~iGtPv~~DTGSs~lWv~c~~~~~~~~~~C~s~~C~~~~~~~~~sc~~~~~~~~~~~~~c~~f~i~YgdGs~~~G~   96 (381)
T 1t6e_X           17 TIPFHDGASLVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGS   96 (381)
T ss_dssp             EEEEETTEEEEEETTCCCEEECCCTTCCCCCCBTTSHHHHHHHSSCCTTCCCCCC------CBCEECCBCTTTCCBCCEE
T ss_pred             EEEEeCCCEEEEECCCCceEEeCCCCCCCCccCCCCchhccccCCCCCCCCCccCCcCcCCCccccccccccCCceeeEE
Confidence            3455555  468999999999983       2     2445566877533321      11223 6899999999 5999


Q ss_pred             EEEEEEEECC----eEEeee----EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEe
Q 015145           62 FSQDNVEVGD----VVVKDQ----VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL  133 (412)
Q Consensus        62 ~~~D~v~lg~----~~~~~~----~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l  133 (412)
                      +++|+|++++    ..++++    .|||+..+....+ ...++||||||++.++      ++.||.++|+ .+++||+||
T Consensus        97 l~~Dtv~ig~~~g~~~v~~~~~~~~Fg~~~~~~~~~~-~~~~dGIlGLg~~~~s------~~~ql~~~~~-~~~~FS~~L  168 (381)
T 1t6e_X           97 LSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASL-PRGSTGVAGLANSGLA------LPAQVASAQK-VANRFLLCL  168 (381)
T ss_dssp             EEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTS-CTTEEEEEECSSSTTS------HHHHHHHHHT-CCSEEEEEC
T ss_pred             EEEEEEEeeccCCCccccceeeeeEeecCcccccCCC-CCCCceEEEeCCCcch------hHHHHhhhcc-cCceEEEEe
Confidence            9999999984    566665    5699887522222 3578999999998876      7889999984 589999999


Q ss_pred             cCCCCCCCCcEEEeCCCCCC--CeecCceEeecccc---ceeEEEEceEEECCeeeceecC---CceEEEcCCCCCcccC
Q 015145          134 NRDPDAEEGGEIVFGGVDPK--HFKGKHTYVPVTKK---GYWQFELGDILIGNQSTGVCEG---GCAAIVDSGTSLLAGP  205 (412)
Q Consensus       134 ~~~~~~~~~G~l~fGg~D~~--~~~g~l~~~p~~~~---~~w~v~~~~i~v~~~~~~~~~~---~~~~ivDSGts~i~lP  205 (412)
                      .+.    ..|+|+|||.|..  ++.|++.|+|+.+.   .+|.|.+++|+|+++.+.+...   ...+||||||+++++|
T Consensus       169 ~~~----~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~iiDTGTtl~~lp  244 (381)
T 1t6e_X          169 PTG----GPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLR  244 (381)
T ss_dssp             CSS----SCEEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEECCCCTTCSCTTCEEECSSCSSEEEC
T ss_pred             CCC----CCeeEEeCCcccccccccCcceeeccccCCCCcceEEEEEEEEEcCEEecCCHHHccCCCEEEECCCccEEeC
Confidence            875    3899999998765  57899999999763   4566999999999998764433   3469999999999999


Q ss_pred             HHHHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCccc
Q 015145          206 TPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAV  285 (412)
Q Consensus       206 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (412)
                      ++++++|.+++.+.-         -.++..      -.++.                                       
T Consensus       245 ~~~~~~l~~~~~~~~---------~~~~~~------g~~~~---------------------------------------  270 (381)
T 1t6e_X          245 PDVYRPLMDAFTKAL---------AAQHAN------GAPVA---------------------------------------  270 (381)
T ss_dssp             HHHHHHHHHHHHHHH---------HHC-------------C---------------------------------------
T ss_pred             HHHHHHHHHHHHHhh---------cccccc------ccccc---------------------------------------
Confidence            999999998885430         000000      00000                                       


Q ss_pred             chhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCCCCceeeeCCCC---------CCCCcEEEEEC-CEEEEeCccc
Q 015145          286 CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI---------PTMPNVSFTIG-DKIFNLSPEQ  355 (412)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~ipC~~~---------~~lp~l~f~~g-g~~~~i~p~~  355 (412)
                                                       +.. ....+.++|...         ..+|+|+|+|+ |++++|+|++
T Consensus       271 ---------------------------------~~~-~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~  316 (381)
T 1t6e_X          271 ---------------------------------RAV-EAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKN  316 (381)
T ss_dssp             ---------------------------------CEE-CCCTTCSCEEEGGGCCEETTEECCCCEEEEETTSCEEEECHHH
T ss_pred             ---------------------------------ccC-CCCCCCCccCCCCCCcccccCCcCCeEEEEECCCcEEEeCCCe
Confidence                                             000 000111344322         26899999997 5999999999


Q ss_pred             ceEEeccccccceeeeeeeccCC---CCCCCcEEEccccccceEEEEeCCCCeEEEEecC
Q 015145          356 YILKTGEGIAEVCISGFMAFDLP---PPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       356 yl~~~~~~~~~~C~~~i~~~~~~---~~~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      |+++..+  ...|+ +|...+.+   ....+.||||+.|||++|+|||++++|||||+++
T Consensus       317 y~~~~~~--~~~Cl-~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~riGfA~~~  373 (381)
T 1t6e_X          317 SMVDVKQ--GTACV-AFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLP  373 (381)
T ss_dssp             HEEEEET--TEEEE-SEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECC
T ss_pred             EEEEcCC--CeEEE-EEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEEEEeccc
Confidence            9997542  45798 57654321   0123689999999999999999999999999975

>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2

Probab=100.00  E-value=2.6e-39  Score=307.68  Aligned_cols=214  Identities=54%  Similarity=0.899  Sum_probs=195.1

Q ss_pred             cccccceeeecCccCccceEEecC-C----CCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV-P----ISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKD   76 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~-~----~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~   76 (412)
                      +|||+|.+.+..||||+++||++. +    .|..|+.|+|++|+|++..++.|.+.|++|++.|.+++|+|++++..+.+
T Consensus        21 iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~~g~~~v~~  100 (239)
T 1b5f_A           21 IGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKENGTFGAIIYGTGSITGFFSQDSVTIGDLVVKE  100 (239)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEEETTEEEEE
T ss_pred             ECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCCCCCCCccCCCeeeCCcEEEEEECCCcEEEEEEEEEEEECCcEEcc
Confidence            689999999999999999999986 2    47788999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCee
Q 015145           77 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFK  156 (412)
Q Consensus        77 ~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~  156 (412)
                      +.||++....+..|....++||||||++.++    .|++++|++||+|.+++||+||.+..+....|.|+|||+|++++.
T Consensus       101 ~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s----~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~  176 (239)
T 1b5f_A          101 QDFIEATDEADNVFLHRLFDGILGLSFQTIS----VPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFR  176 (239)
T ss_dssp             EEEEEEEEECHHHHTTCSCCEEEECSCCSSS----CCHHHHHHHTTCCSSSEEEEEECCSCSSSCCEEEEETSCCGGGEE
T ss_pred             EEEEEEEeccCccccccCcceEEecCccccc----cHHHHHHHHCCCCCCCEEEEEEeCCCCCCCCeEEEECCcChhhcc
Confidence            9999999876555666778999999998776    678899999999999999999998644446899999999999999


Q ss_pred             cCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCC
Q 015145          157 GKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE  219 (412)
Q Consensus       157 g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~  219 (412)
                      |++.|+|+.+..+|.|.+++|.++++.+.++.....++|||||+++++|.+++++|.++++++
T Consensus       177 g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~~~~~i~~~iga~  239 (239)
T 1b5f_A          177 GDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGAN  239 (239)
T ss_dssp             EEEEEEEEEEETTEEEEECCEEETTEECCTTTTCEEEEECTTCSSEEECHHHHHHHHHHTTCC
T ss_pred             CceEEEEcccCCeEEEEeeEEEECCEEecccCCCCEEEEecCcchhhCCHHHHHHHHHHhCCC
Confidence            999999999999999999999999998766666789999999999999999999999999763

>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2

Probab=99.82  E-value=1.8e-20  Score=150.98  Aligned_cols=87  Identities=66%  Similarity=1.107  Sum_probs=76.9

Q ss_pred             CceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEEEEeCCCC
Q 015145          325 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKL  404 (412)
Q Consensus       325 ~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yvvfD~e~~  404 (412)
                      |.|.+||+.++++|+|+|+|+|++++|+|++|+++....+...|++++++.+.+ ..++.||||++|||++|+|||++++
T Consensus         1 G~y~v~C~~~~~~P~i~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~-~~~~~~ILGd~Fl~~~y~vfD~~~~   79 (87)
T 1b5f_B            1 EELQVDCNTLSSMPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMDAT-LLGPLWILGDVFMRPYHTVFDYGNL   79 (87)
T ss_dssp             CCCEECGGGGGGCCCEEEEETTEEEEECHHHHEEEESCTTTCEEEESEEECCCB-SSSBEEEECHHHHTTEEEEEETTTT
T ss_pred             CcEEEECCCCCcCCcEEEEECCEEEEECHHHhEEEccCCCCCEEEEEEEECCCC-CCCCeEEechHHhccEEEEEECCCC
Confidence            579999998889999999999999999999999986554456899999987643 3457899999999999999999999


Q ss_pred             eEEEEecC
Q 015145          405 RIGFAEAA  412 (412)
Q Consensus       405 rIGfa~~~  412 (412)
                      |||||+++
T Consensus        80 riGfA~~~   87 (87)
T 1b5f_B           80 LVGFAEAA   87 (87)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEcC
Confidence            99999986

>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}

Probab=99.80  E-value=1.4e-20  Score=158.25  Aligned_cols=105  Identities=61%  Similarity=1.108  Sum_probs=78.5

Q ss_pred             CCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeecccc--ccCCcccchhhhhHHH
Q 015145          217 GGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENV--SAGDSAVCSACEMAVV  294 (412)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  294 (412)
                      +++|+++.+||.+|++|++.||++|.++.+|+.+|.+.|+|+++....+++.+..+.++++.  ++++...|++|||+|+
T Consensus         2 ~a~g~~~~~C~~~V~~Y~~~ii~~l~~~~~P~~iC~~lglC~~~~~~~~~~~i~~vv~~~~~~~~~~~~~~C~~Ce~~V~   81 (108)
T 3rfi_A            2 SAMAIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIKTVVERETEGSSVGEAPLCTACEMAVV   81 (108)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTSSCC------------------------CCHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHcCCcCCCcccccccccccccccccccccCCCCCcChhHHHHHH
Confidence            46688999999999999999999999999999999999999998876666555555554322  2358999999999999


Q ss_pred             HHHhhhhhhhhHHHHHHHhhhhccCCC
Q 015145          295 WVQNQLKQKQTKEKVLSYINELCDSLP  321 (412)
Q Consensus       295 ~~~~~~~~~~t~~~~~~~~~~~c~~~~  321 (412)
                      |++.+|++|+|+++|+++++++|.++|
T Consensus        82 ~ie~~L~~N~Te~eI~~~l~k~C~~LP  108 (108)
T 3rfi_A           82 WMQNQLKQEGTKEKVLEYVNQLCEKIP  108 (108)
T ss_dssp             HHHHHHTSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHhhCc
Confidence            999999999999999999999999987

>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*

Probab=99.40  E-value=1.5e-13  Score=112.96  Aligned_cols=70  Identities=27%  Similarity=0.346  Sum_probs=64.9

Q ss_pred             cccccceeeecCccCccceEEecC-C-----CCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECC
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV-P-----ISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGD   71 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~-~-----~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~   71 (412)
                      +|||+|.+.+..||||+++||++. +     .|..|..|+|++|+|++..++.|.+.|++|++.|.+++|+|+|++
T Consensus        21 iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~~~~~y~p~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~i~g   96 (97)
T 1lya_A           21 IGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPC   96 (97)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEEESC
T ss_pred             ECCCCeEEEEEEeCCCCceEEeEcCccCcccccCCCCCCCchhCCCceeCCCcEEEEECCcEEEEEEEEEEEEECC
Confidence            689999999999999999999986 1     466789999999999999999999999999999999999999986

>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*

Probab=97.75  E-value=1.6e-05  Score=62.59  Aligned_cols=41  Identities=37%  Similarity=0.715  Sum_probs=38.8

Q ss_pred             cccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCC
Q 015145          283 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNP  323 (412)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~  323 (412)
                      ...|..|+++|.++.+++++|.|+++|++++++.|.++|..
T Consensus         3 ~~~C~~C~~~v~~~~~~l~~n~t~~~I~~~l~~~C~~lp~~   43 (83)
T 4ddj_A            3 SLPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKP   43 (83)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTSCTT
T ss_pred             CCcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHhCCCc
Confidence            46799999999999999999999999999999999999874

>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A

Probab=97.72  E-value=1.5e-05  Score=64.04  Aligned_cols=49  Identities=22%  Similarity=0.594  Sum_probs=42.6

Q ss_pred             CCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCCCCceeeeCC
Q 015145          281 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCD  332 (412)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~ipC~  332 (412)
                      .+...|..|+++|.+++.++++|.|+++|.+++++.|.++|...   .-.|.
T Consensus         3 ~~~~~C~~C~~vv~~i~~~l~~n~t~~~I~~~l~~~C~~lp~~~---~~~C~   51 (91)
T 2qyp_A            3 VSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSL---SEECQ   51 (91)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHTSCSST---TTTHH
T ss_pred             CCCCcchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHCCCCc---ccchH
Confidence            46778999999999999999999999999999999999999743   23565

>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A

Probab=97.68  E-value=2.2e-05  Score=60.98  Aligned_cols=47  Identities=28%  Similarity=0.677  Sum_probs=41.2

Q ss_pred             cccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCCCCceeeeCC
Q 015145          283 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCD  332 (412)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~ipC~  332 (412)
                      ...|++|+++|.+++.++.+|.|+++|.+.+++.|.++|..   +.-.|.
T Consensus         2 ~~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lp~~---~~~~C~   48 (80)
T 3bqp_A            2 GGFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP---YQKQCD   48 (80)
T ss_dssp             CTTHHHHHHHHHHHHHHSCTTCCHHHHHHHHHHHGGGSCGG---GHHHHH
T ss_pred             cCcchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhCCCc---cchhhH
Confidence            45799999999999999999999999999999999999863   334554

>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1

Probab=97.63  E-value=2.7e-05  Score=60.46  Aligned_cols=38  Identities=16%  Similarity=0.226  Sum_probs=36.2

Q ss_pred             ccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCC
Q 015145          284 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPN  322 (412)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~  322 (412)
                      ..|..|+++|..+.+.+ +|.|+++|++.+++.|+++|.
T Consensus         2 ~~C~~C~~~v~~le~~l-~n~Te~~I~~~L~~vC~~l~~   39 (74)
T 1l9l_A            2 RDYRTCLTIVQKLKKMV-DKPTQRSVSNAATRVCRTGRS   39 (74)
T ss_dssp             HHHHHHHHHHHHHHHHC-SSCCHHHHHHHHHHGGGSSCH
T ss_pred             CCChHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHhCCh
Confidence            46999999999999999 999999999999999999985

>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A

Probab=97.61  E-value=3.2e-05  Score=60.75  Aligned_cols=42  Identities=24%  Similarity=0.611  Sum_probs=38.6

Q ss_pred             CCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCC
Q 015145          281 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPN  322 (412)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~  322 (412)
                      ++...|..|+++|.++..++.+|.|+++|.+.+++.|..+|.
T Consensus         2 ~~~~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lp~   43 (83)
T 2gtg_A            2 DSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPK   43 (83)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTSSCH
T ss_pred             CCCCcChhHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHCCC
Confidence            467789999999999999999999999999999999999985

>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4

Probab=97.53  E-value=4.2e-05  Score=59.65  Aligned_cols=40  Identities=28%  Similarity=0.519  Sum_probs=37.5

Q ss_pred             cccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCC
Q 015145          283 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNP  323 (412)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~  323 (412)
                      ...|.+|+++|..+.+++.+| |+++|.+++++.|+.+|..
T Consensus         2 ~~~C~~C~~vv~~ve~~l~~n-t~~~I~~~l~~~C~~lp~~   41 (77)
T 1of9_A            2 EILCNLCTGLINTLENLLTTK-GADKVKDYISSLCNKASGF   41 (77)
T ss_dssp             CSSHHHHHHHHHHHHHHCSSS-CSHHHHHHHHHHHTTCSST
T ss_pred             CCcchhHHHHHHHHHHHHHHC-cHHHHHHHHHHHHHcCChH
Confidence            467999999999999999999 9999999999999999764

>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A

Probab=97.53  E-value=4e-05  Score=61.44  Aligned_cols=51  Identities=29%  Similarity=0.567  Sum_probs=40.9

Q ss_pred             HHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCC
Q 015145          209 VTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNG  261 (412)
Q Consensus       209 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~  261 (412)
                      ++++.+.++..  ++.+|+.+|++|.+.|+++|.++.+|+.+|.+.|+|....
T Consensus        35 l~~~C~~lp~~--~~~~C~~~V~~y~~~ii~~l~~~~~P~~iC~~l~lC~~~~   85 (91)
T 2qyp_A           35 FDKMCSKLPKS--LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCSGTR   85 (91)
T ss_dssp             HHHHHHTSCSS--TTTTHHHHHHHHHHHHHHHHHHTCCHHHHHHTTTCC----
T ss_pred             HHHHHHHCCCC--cccchHHHHHHHHHHHHHHHHHcCCHHHHHhhcCCCCCcc
Confidence            44455555544  7899999999999999999999999999999999999753

>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1

Probab=97.44  E-value=4.7e-05  Score=59.49  Aligned_cols=39  Identities=15%  Similarity=0.429  Sum_probs=37.4

Q ss_pred             ccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCC
Q 015145          284 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPN  322 (412)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~  322 (412)
                      ..|.+|+++|+.+.+++.++.|+++|.+.+++.|.++|.
T Consensus         2 ~~C~~C~~iv~~ve~~l~~~~t~~~I~~~l~~~C~~lp~   40 (78)
T 1nkl_A            2 YFCESCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLKI   40 (78)
T ss_dssp             CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCS
T ss_pred             CcchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCch
Confidence            469999999999999999999999999999999999986

>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A

Probab=97.44  E-value=4.3e-05  Score=59.28  Aligned_cols=49  Identities=22%  Similarity=0.459  Sum_probs=41.4

Q ss_pred             HHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhccccccc
Q 015145          209 VTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF  259 (412)
Q Consensus       209 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  259 (412)
                      ++.+.+.++..  ++.+|+.+|++|.+.|++++.++.+|+.+|.+.|+|+.
T Consensus        32 l~~~C~~lp~~--~~~~C~~~v~~y~~~ii~~l~~~~~P~~iC~~l~~C~~   80 (80)
T 3bqp_A           32 LEKGCSFLPDP--YQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGACPS   80 (80)
T ss_dssp             HHHHGGGSCGG--GHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHTTSSCC
T ss_pred             HHHHHHhCCCc--cchhhHHHHHHHHHHHHHHHHHCCCHHHHHhhcCCCCc
Confidence            33444446653  78999999999999999999999999999999999963

>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3

Probab=97.32  E-value=0.00012  Score=57.49  Aligned_cols=41  Identities=24%  Similarity=0.444  Sum_probs=38.3

Q ss_pred             cccchhhhhHHHHHHhhhhhhhhH-HHHHHHhhhhccCCCCC
Q 015145          283 SAVCSACEMAVVWVQNQLKQKQTK-EKVLSYINELCDSLPNP  323 (412)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~~~c~~~~~~  323 (412)
                      ...|..|+++|..+.+++.+|.|+ ++|.+.+++.|+++|..
T Consensus         3 ~~~C~~C~~~V~~ve~~l~~n~t~~~~I~~~l~~~C~~lp~~   44 (81)
T 1n69_A            3 GDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPG   44 (81)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHGGGGCTT
T ss_pred             CCcchHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHcCcH
Confidence            457999999999999999999999 99999999999999953

>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3

Probab=97.25  E-value=0.0001  Score=57.88  Aligned_cols=48  Identities=25%  Similarity=0.615  Sum_probs=39.9

Q ss_pred             HHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhccccccc
Q 015145          209 VTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF  259 (412)
Q Consensus       209 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  259 (412)
                      ++.+.+.++..  ++.+||.+|++|++.|++++. ..+|+.+|.+.|+|++
T Consensus        34 l~~~C~~lp~~--~~~~C~~~V~~y~~~ii~~l~-~~~P~~iC~~lglC~s   81 (81)
T 1n69_A           34 VKEECDRLGPG--MADICKNYISQYSEIAIQMMM-HMQPKEICALVGFCDE   81 (81)
T ss_dssp             HHHHGGGGCTT--HHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHTTSCC-
T ss_pred             HHHHHHHcCcH--HHHHHHHHHHHHHHHHHHHHh-cCCHHHHHhhcCCCCC
Confidence            45556666654  899999999999998888887 6999999999999973

>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A

Probab=97.19  E-value=7.2e-05  Score=58.71  Aligned_cols=38  Identities=39%  Similarity=0.749  Sum_probs=35.9

Q ss_pred             eecchhhhhhhchhhHHHHHhhCCCccchhhccccccc
Q 015145          222 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF  259 (412)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  259 (412)
                      +..+|+.+|++|.+.|++++.++.+|+.+|.+.|+|+.
T Consensus        45 ~~~~C~~~V~~y~~~ii~~l~~~~~P~~iC~~l~lC~~   82 (83)
T 2gtg_A           45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCSG   82 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTSCC-
T ss_pred             chhHHHHHHHHHHHHHHHHHHHCCCHHHHHHhcCCCCC
Confidence            78999999999999999999999999999999999975

>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1

Probab=97.14  E-value=0.00023  Score=55.49  Aligned_cols=49  Identities=16%  Similarity=0.358  Sum_probs=42.8

Q ss_pred             HHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhccccccc
Q 015145          208 VVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF  259 (412)
Q Consensus       208 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  259 (412)
                      .++.+-+.++.   ++..|+.+|++|.+.|+++|.++.+|+.+|...++|++
T Consensus        30 ~l~~~C~~lp~---~~~~C~~~V~~y~~~iI~~l~~~~~P~~IC~~l~lC~~   78 (78)
T 1nkl_A           30 AASQVCDKLKI---LRGLCKKIMRSFLRRISWDILTGKKPQAICVDIKICKE   78 (78)
T ss_dssp             HHHHHHHHSCS---THHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCSCC
T ss_pred             HHHHHHhhCch---hHHHHHHHHHHHHHHHHHHHHHCCCHHHHHhccCCCCc
Confidence            34556666654   78999999999999999999999999999999999964

>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A

Probab=97.08  E-value=0.00021  Score=58.47  Aligned_cols=51  Identities=22%  Similarity=0.286  Sum_probs=42.6

Q ss_pred             HHHHHHHHhCCC-ceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccc
Q 015145          208 VVTEINHAIGGE-GVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA  258 (412)
Q Consensus       208 ~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~  258 (412)
                      .++++.+.++.. .+++.+|+.+|++|.+.|+++|.++.+|+.+|+..++|+
T Consensus        48 ~L~~~C~~lp~~ipf~~~~C~~~V~~y~~~II~~L~~~~~P~~VC~~L~lC~   99 (99)
T 2js9_A           48 DFDAECKKLFHTIPFGTRECDHYVNSKVDPIIHELEGGTAPKDVCTKLNECP   99 (99)
T ss_dssp             HHHHHHHTGGGGSTTHHHHHHTTTTTTHHHHHHHHHHTCCTTHHHHHTTCCC
T ss_pred             HHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcCCCC
Confidence            355555555532 337899999999999999999999999999999999995

>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A

Probab=97.07  E-value=0.00018  Score=58.88  Aligned_cols=53  Identities=15%  Similarity=0.334  Sum_probs=43.0

Q ss_pred             ccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCCCCceeeeCCC
Q 015145          279 SAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDR  333 (412)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~ipC~~  333 (412)
                      +..+...|.+|+++|..+.+++  |+|+++|++.|++.|..+|.....+.-.|..
T Consensus        17 ~~~~~~~C~~C~~vV~~ve~~l--n~t~~~I~~~L~~~C~~lp~~ipf~~~~C~~   69 (99)
T 2js9_A           17 RGRSALSCQMCELVVKKYEGSA--DKDANVIKKDFDAECKKLFHTIPFGTRECDH   69 (99)
T ss_dssp             --CCSSTHHHHHHHHHHHTTTS--SCCHHHHHHHHHHHHHTGGGGSTTHHHHHHT
T ss_pred             CCCCCCcchhHHHHHHHHHHHH--HhhHHHHHHHHHHHHHcCCCcchHHHHHHHH
Confidence            3457889999999999999999  8999999999999999999542223446764

>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4

Probab=97.05  E-value=0.00022  Score=55.55  Aligned_cols=48  Identities=17%  Similarity=0.349  Sum_probs=41.6

Q ss_pred             HHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhccccc
Q 015145          208 VVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC  257 (412)
Q Consensus       208 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~  257 (412)
                      .++.+-+.+++.  ++..|+.+|++|.+.|++++.++.+|+.+|...++|
T Consensus        30 ~l~~~C~~lp~~--~~~~C~~~V~~y~~~iI~~l~~~~~P~~IC~~l~lC   77 (77)
T 1of9_A           30 YISSLCNKASGF--IATLCTKVLDFGIDKLIQLIEDKVDANAICAKIHAC   77 (77)
T ss_dssp             HHHHHHTTCSST--THHHHHHHHHHCHHHHHHHHHHTCCHHHHHHHHSCC
T ss_pred             HHHHHHHcCChH--HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcCCC
Confidence            345566666544  799999999999999999999999999999999988

>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*

Probab=96.73  E-value=0.00048  Score=53.98  Aligned_cols=50  Identities=26%  Similarity=0.472  Sum_probs=40.8

Q ss_pred             HHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhC-CCccchhhccccccc
Q 015145          209 VTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSG-LLPEKVCQQIGLCAF  259 (412)
Q Consensus       209 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~c~~~~~~~~  259 (412)
                      ++.+.+.++.. .++.+||.+|++|++.|++++.++ .+|+.+|...|+|.+
T Consensus        33 l~~~C~~lp~~-~~~~~C~~~v~~y~~~ii~~l~~~~~~p~~vC~~l~lC~s   83 (83)
T 4ddj_A           33 LEKTCDWLPKP-NMSASCKEIVDSYLPVILDIIKGEMSRPGEVCSALNLCES   83 (83)
T ss_dssp             HHHHHTTSCTT-HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTTSCC-
T ss_pred             HHHHHHhCCCc-hhhHHHHHHHHHHHHHHHHHHHHccCCHHHHHhHcCCCCc
Confidence            44555555543 258899999999999999999999 599999999999974

>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1

Probab=96.32  E-value=0.00077  Score=52.16  Aligned_cols=44  Identities=16%  Similarity=0.352  Sum_probs=35.7

Q ss_pred             HHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhccc
Q 015145          210 TEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIG  255 (412)
Q Consensus       210 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~  255 (412)
                      +.+.+.++..  +..+|+.+|++|++.|+++|.++.+|+.+|.+.+
T Consensus        31 ~~vC~~l~~~--~~~~C~~~V~~y~~~Ii~~L~~~~~P~~IC~~ik   74 (74)
T 1l9l_A           31 TRVCRTGRSR--WRDVCRNFMRRYQSRVIQGLVAGETAQQICEDLR   74 (74)
T ss_dssp             HHGGGSSCHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHGGGC
T ss_pred             HHHHHhCChH--HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcC
Confidence            3334444432  7899999999999999999999999999998653

>3s64_A AC-SLP-1, saposin-like protein 1; lipid-binding, lipid binding protein; HET: CIT EPE; 2.30A {Ancylostoma caninum}

Probab=94.83  E-value=0.016  Score=46.06  Aligned_cols=52  Identities=23%  Similarity=0.327  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHh-CCCceeecchhhhhhhchhhHHHHHhhCCCccchhhccccc
Q 015145          206 TPVVTEINHAI-GGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC  257 (412)
Q Consensus       206 ~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~  257 (412)
                      ...+++....+ ++......+|+.|+.+|.+.|++.|.+|..|+.+|+..+.|
T Consensus        35 e~~~d~~Ckk~~~~ip~a~k~C~~~v~~~~d~II~eLe~g~~P~~VC~~L~~C   87 (87)
T 3s64_A           35 EKEFIQGCMTLIGWLPYAEKECKALAKIEMGAIKTLLENGSAPEEICTTLHAC   87 (87)
T ss_dssp             HHHHHHHHHHHHCSSTTHHHHHHHHHHHHHHHHHHHHHTTCCTTTHHHHHHCC
T ss_pred             HHHHHHHHHHhcccCCchHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHhccC
Confidence            34566666666 43344578999999999999999999999999999998887

>3s64_A AC-SLP-1, saposin-like protein 1; lipid-binding, lipid binding protein; HET: CIT EPE; 2.30A {Ancylostoma caninum}

Probab=81.39  E-value=0.27  Score=39.02  Aligned_cols=39  Identities=21%  Similarity=0.378  Sum_probs=33.5

Q ss_pred             CCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCC
Q 015145          281 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP  321 (412)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~  321 (412)
                      .+...|..|+++|+-+...+++  +..+|.+.++..|.++.
T Consensus         8 ~~~l~C~~C~~~Vk~~e~~i~~--~~~eie~~~d~~Ckk~~   46 (87)
T 3s64_A            8 SNVIVCEICKMAVKLIVPEADK--DLDQLEKEFIQGCMTLI   46 (87)
T ss_dssp             CCTTHHHHHHHHHHHHTTCSSC--SSTTHHHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHhc
Confidence            3568899999999999999986  55579999999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	412
g1htr.1	372	b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens	2e-36
g1htr.1	372	b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens	2e-25
d1smra_	335	b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu	4e-36
d1smra_	335	b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu	7e-27
d1dpja_	329	b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha	5e-35
d1dpja_	329	b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha	4e-24
d1qdma1	104	a.64.1.2 (A:1S-104S) (Pro)phytepsin {Barley (Horde	7e-35
d1qdma2	337	b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase	3e-34
d1qdma2	337	b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase	5e-29
g1b5f.1	326	b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin	4e-34
g1b5f.1	326	b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin	2e-25
g1lya.1	338	b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens)	2e-32
g1lya.1	338	b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens)	2e-26
d1hrna_	337	b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho	4e-32
d1hrna_	337	b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho	5e-26
d3psga_	370	b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI	5e-32
d3psga_	370	b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI	1e-27
d2qp8a1	387	b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum	9e-32
d2qp8a1	387	b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum	3e-14
d1am5a_	324	b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo	8e-31
d1am5a_	324	b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo	2e-23
d1wkra_	340	b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo	2e-30
d1wkra_	340	b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo	4e-19
d1mppa_	357	b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]	3e-30
d1mppa_	357	b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]	2e-15
d3cmsa_	323	b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos	3e-29
d3cmsa_	323	b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos	4e-20
d1eaga_	342	b.50.1.2 (A:) Acid protease {Yeast (Candida albica	2e-27
d1eaga_	342	b.50.1.2 (A:) Acid protease {Yeast (Candida albica	2e-14
d1j71a_	334	b.50.1.2 (A:) Acid protease {Yeast (Candida tropic	1e-25
d1j71a_	334	b.50.1.2 (A:) Acid protease {Yeast (Candida tropic	4e-14
d2bjua1	329	b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad	1e-25
d2bjua1	329	b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad	1e-21
d2apra_	325	b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus	8e-25
d2apra_	325	b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus	8e-20
d1miqa_	373	b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e	1e-23
d1miqa_	373	b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e	2e-23
d1oewa_	330	b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung	3e-23
d1oewa_	330	b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung	7e-16
d1izea_	323	b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o	1e-22
d1izea_	323	b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o	2e-17
d1t6ex_	381	b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr	2e-18
d1t6ex_	381	b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr	5e-18
d1bxoa_	323	b.50.1.2 (A:) Acid protease {Fungus (Penicillium j	2e-17
d1bxoa_	323	b.50.1.2 (A:) Acid protease {Fungus (Penicillium j	7e-17
d1of9a_	77	a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica	1e-12
d1of9a_	77	a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica	0.001
d2gtga1	78	a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens)	4e-12
d2gtga1	78	a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens)	6e-09
d1nkla_	78	a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [Tax	2e-11
d1nkla_	78	a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [Tax	1e-05
d1n69a_	78	a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [Tax	3e-07
d1n69a_	78	a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [Tax	4e-04
d1l9la_	74	a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Hom	3e-06
d1l9la_	74	a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Hom	0.003

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  132 bits (333), Expect = 4e-36
 Identities = 75/199 (37%), Positives = 115/199 (57%), Gaps = 3/199 (1%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G    I+YGSG + GF SQD+V VG + V    F E T+   + F+LA+FDG++G+GF  
Sbjct: 73  GDDFTIHYGSGRVKGFLSQDSVTVGGITVTQT-FGEVTQLPLIPFMLAQFDGVLGMGFPA 131

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
            AVG   PV+D+++ QG++ E+VFS + NR P     GE+V GG DP+H++G   YV ++
Sbjct: 132 QAVGGVTPVFDHILSQGVLKEKVFSVYYNRGPHLLG-GEVVLGGSDPQHYQGDFHYVSLS 190

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 225
           K   WQ  +  + +G+ +  +CE GC  +VD+G+S ++ PT  +  I  A+G +     E
Sbjct: 191 KTDSWQITMKGVSVGSSTL-LCEEGCEVVVDTGSSFISAPTSSLKLIMQALGAKEKRLHE 249

Query: 226 CKLVVSQYGDLIWDLLVSG 244
             +  SQ   L       G
Sbjct: 250 YVVSCSQVPTLPDISFNLG 268

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (268), Expect = 7e-27
 Identities = 35/103 (33%), Positives = 58/103 (56%)

Query: 309 VLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 368
            L  I +   +    + E ++ C ++PT+P++SF +G + + LS   Y+L+      ++C
Sbjct: 232 SLKLIMQALGAKEKRLHEYVVSCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPNRRDKLC 291

Query: 369 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
                A D+PPP GP+W+LG  F+  ++T FD    RIGFA A
Sbjct: 292 TVALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALA 334

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]

 Score =  130 bits (326), Expect = 5e-35
 Identities = 72/194 (37%), Positives = 111/194 (57%), Gaps = 3/194 (1%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G    I YG+GS+ G+ SQD + +GD+ +  Q F EAT E  LTF   +FDGI+GLG+  
Sbjct: 69  GTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDT 128

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWL-NRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV 164
           I+V   VP + N ++Q L+ E+ F+F+L +   D E GGE  FGG+D   FKG  T++PV
Sbjct: 129 ISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPV 188

Query: 165 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSA 224
            +K YW+ +   I +G++   +   G    +D+GTSL+  P+ +   IN  IG +   + 
Sbjct: 189 RRKAYWEVKFEGIGLGDEYAELESHGA--AIDTGTSLITLPSGLAEMINAEIGAKKGWTG 246

Query: 225 ECKLVVSQYGDLIW 238
           +  L  +   +L  
Sbjct: 247 QYTLDCNTRDNLPD 260

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]

 Score = 99.6 bits (247), Expect = 4e-24
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 4/103 (3%)

Query: 309 VLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 368
           +   IN    +     G+  +DC+    +P++ F      F + P  Y L+        C
Sbjct: 230 LAEMINAEIGAKKGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVSG----SC 285

Query: 369 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
           IS     D P P GPL I+GD F+  Y++++D G   +G A+A
Sbjct: 286 ISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKA 328

>d1qdma1 a.64.1.2 (A:1S-104S) (Pro)phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 104

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Swaposin
domain: (Pro)phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  122 bits (307), Expect = 7e-35
 Identities = 55/104 (52%), Positives = 75/104 (72%), Gaps = 3/104 (2%)

Query: 221 VVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSA 280
           VVS ECK +VSQYG  I DLL++   P+K+C Q+GLC F+G   VS GI++VV+ E V +
Sbjct: 1   VVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKS 60

Query: 281 ---GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 321
                  +CSACEMAVVW+QNQL Q +T++ +L Y+N+LC+ LP
Sbjct: 61  NGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLP 104

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plant acid proteinase, phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  127 bits (320), Expect = 3e-34
 Identities = 121/173 (69%), Positives = 148/173 (85%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           GK   I YG+GSI+G+FS+D+V VGD+VVKDQ FIEAT+E  +TFL+A+FDGI+GLGF+E
Sbjct: 72  GKPAAIQYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKE 131

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           I+VG AVPVW  M+EQGLVS+ VFSFWLNR  D  EGGEI+FGG+DPKH+ G+HTYVPVT
Sbjct: 132 ISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVT 191

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
           +KGYWQF++GD+L+G +STG C GGCAAI DSGTSLLAGPT ++TEIN  IG 
Sbjct: 192 QKGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGA 244

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plant acid proteinase, phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  113 bits (283), Expect = 5e-29
 Identities = 68/106 (64%), Positives = 81/106 (76%)

Query: 307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 366
             +++ INE   +  +PMGES +DC  + +MP++ FTIG K F L PE+YILK GEG A 
Sbjct: 232 TAIITEINEKIGAAGSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAA 291

Query: 367 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
            CISGF A D+PPPRGPLWILGDVFMG YHTVFD GKLRIGFA+AA
Sbjct: 292 QCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 337

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 4e-32
 Identities = 70/175 (40%), Positives = 113/175 (64%), Gaps = 4/175 (2%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           G    + Y +G++SGF SQD + VG + V    F E T   +L F+LA FDG++G+GF E
Sbjct: 73  GTELTLRYSTGTVSGFLSQDIITVGGITVTQM-FGEVTEMPALPFMLAEFDGVVGMGFIE 131

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE--GGEIVFGGVDPKHFKGKHTYVP 163
            A+G   P++DN++ QG++ E+VFSF+ NRD +  +  GG+IV GG DP+H++G   Y+ 
Sbjct: 132 QAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYIN 191

Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
           + K G WQ ++  + +G+ +  +CE GC A+VD+G S ++G T  + ++  A+G 
Sbjct: 192 LIKTGVWQIQMKGVSVGSSTL-LCEDGCLALVDTGASYISGSTSSIEKLMEALGA 245

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (261), Expect = 5e-26
 Identities = 31/86 (36%), Positives = 49/86 (56%)

Query: 326 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 385
           + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W
Sbjct: 251 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 310

Query: 386 ILGDVFMGVYHTVFDSGKLRIGFAEA 411
            LG  F+  ++T FD    RIGFA A
Sbjct: 311 ALGATFIRKFYTEFDRRNNRIGFALA 336

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  122 bits (307), Expect = 5e-32
 Identities = 68/173 (39%), Positives = 103/173 (59%), Gaps = 3/173 (1%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
            +   I YG+GS++G    D V+VG +   +Q+F  +  E       A FDGI+GL +  
Sbjct: 112 SQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPS 171

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           I+   A PV+DN+ +QGLVS+++FS +L+ + D+  G  ++ GG+D  ++ G   +VPV+
Sbjct: 172 ISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS--GSVVLLGGIDSSYYTGSLNWVPVS 229

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
            +GYWQ  L  I +  ++   C GGC AIVD+GTSLL GPT  +  I   IG 
Sbjct: 230 VEGYWQITLDSITMDGETI-ACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGA 281

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  110 bits (275), Expect = 1e-27
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 4/106 (3%)

Query: 307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 366
              ++ I     +  N  GE +I C  I ++P++ FTI    + LSP  YIL+  +    
Sbjct: 269 TSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDS--- 325

Query: 367 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
            C SGF   D+P   G LWILGDVF+  Y+TVFD    ++G A  A
Sbjct: 326 -CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: beta-secretase (memapsin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 9e-32
 Identities = 51/259 (19%), Positives = 86/259 (33%), Gaps = 18/259 (6%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVG--DVVVKDQVFIEATREGSLTFLLARFDGIIGLGF 103
            K   + Y  G   G    D V +     V         T         + ++GI+GL +
Sbjct: 66  RKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAY 125

Query: 104 REIAVGD--AVPVWDNMVEQGLVSEEVFSFWLNR--------DPDAEEGGEIVFGGVDPK 153
            EIA  D    P +D++V+Q  V   +FS  L          +  A  GG ++ GG+D  
Sbjct: 126 AEIARPDDSLEPFFDSLVKQTHV-PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHS 184

Query: 154 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVC---EGGCAAIVDSGTSLLAGPTPVVT 210
            + G   Y P+ ++ Y++  +  + I  Q   +         +IVDSGT+ L  P  V  
Sbjct: 185 LYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 244

Query: 211 EINHAIGGEGVVSAECKLVVSQYGDLIWDL--LVSGLLPEKVCQQIGLCAFNGAEYVSTG 268
               +I                   + W        + P      +G             
Sbjct: 245 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 304

Query: 269 IKTVVEKENVSAGDSAVCS 287
            + +   E+V+        
Sbjct: 305 QQYLRPVEDVATSQDDCYK 323

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: beta-secretase (memapsin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (174), Expect = 3e-14
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 13/92 (14%)

Query: 329 IDCDRIPTMPNVSFTIGDKI------FNLSPEQYILKTGE--GIAEVCISGFMAFDLPPP 380
                    P +S  +  ++        + P+QY+    +     + C    +       
Sbjct: 274 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI-----SQ 328

Query: 381 RGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
                ++G V M  ++ VFD  + RIGFA +A
Sbjct: 329 SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSA 360

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Atlantic cod (Gadus morhua) [TaxId: 8049]

 Score =  118 bits (296), Expect = 8e-31
 Identities = 67/173 (38%), Positives = 93/173 (53%), Gaps = 4/173 (2%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           GK+ ++ YG+G + G   QD V VG     +Q   E+  E       A FDGI+GL +  
Sbjct: 68  GKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAYPS 127

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           IA   AVPV+DNM  Q LV +++FSF+L+       G E++ GGVD  H+ G   ++PVT
Sbjct: 128 IAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGA--NGSEVMLGGVDNSHYTGSIHWIPVT 185

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
            + YWQ  L  I +  Q+      GC AIVD+GTS +  P   +  I   IG 
Sbjct: 186 AEKYWQVALDGITVNGQTA--ACEGCQAIVDTGTSKIVAPVSALANIMKDIGA 236

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Atlantic cod (Gadus morhua) [TaxId: 8049]

 Score = 98.1 bits (243), Expect = 2e-23
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 4/89 (4%)

Query: 324 MGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGP 383
            GE + +C  + ++P+++FTI      L P  YI    EG    C SG  +  +P     
Sbjct: 240 QGEMMGNCASVQSLPDITFTINGVKQPLPPSAYI----EGDQAFCTSGLGSSGVPSNTSE 295

Query: 384 LWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
           LWI GDVF+  Y+T++D    ++GFA AA
Sbjct: 296 LWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]

 Score =  117 bits (294), Expect = 2e-30
 Identities = 48/186 (25%), Positives = 72/186 (38%), Gaps = 20/186 (10%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
                + YGSGS SG    D V +G + +  Q    A+R+          DGI+G+G  +
Sbjct: 56  SDKVSVTYGSGSFSGTEYTDTVTLGSLTIPKQSIGVASRDSGFDG----VDGILGVGPVD 111

Query: 106 IAVGDAVP--------VWDNMVEQGLVSEEVFSFWLNRDP-DAEEGGEIVFGGVDPKHFK 156
           + VG   P        V DN+  QG +   + +        ++   GE+ FG  D   + 
Sbjct: 112 LTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYT 171

Query: 157 GKHTYVPVTK----KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212
           G  TY P+T       YW          + S        A IVD+GT+L    +    + 
Sbjct: 172 GSITYTPITSTSPASAYWGINQSIRYGSSTS---ILSSTAGIVDTGTTLTLIASDAFAKY 228

Query: 213 NHAIGG 218
             A G 
Sbjct: 229 KKATGA 234

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]

 Score = 85.4 bits (210), Expect = 4e-19
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 307 EKVLSYINELCDSLP-NPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTG---- 361
               +   +   ++  N  G   +   +   + ++ FTIG + F L+    I        
Sbjct: 222 SDAFAKYKKATGAVADNNTGLLRLTTAQYANLQSLFFTIGGQTFELTANAQIWPRNLNTA 281

Query: 362 -EGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
             G A                G  +I G  F+  +++V+D+   R+G A  
Sbjct: 282 IGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATT 332

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin
species: Mucor pusillus [TaxId: 4840]

 Score =  117 bits (294), Expect = 3e-30
 Identities = 48/196 (24%), Positives = 80/196 (40%), Gaps = 18/196 (9%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARF-----DGIIG 100
             +  I YG+G  +G + +D++ VG   VK Q           T   +       DGI G
Sbjct: 71  DYNLNITYGTGGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFG 130

Query: 101 LGFREIAVGDAV------PVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKH 154
             + +    +A        V  N+ +QGL+S  VFS ++N +     GG++VFGGV+   
Sbjct: 131 AAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDG---GGQVVFGGVNNTL 187

Query: 155 FKGKHTYVPVTKK----GYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVT 210
             G   Y  V K      +W   +  + I        +G  A  +D+GT+    P+    
Sbjct: 188 LGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAFTIDTGTNFFIAPSSFAE 247

Query: 211 EINHAIGGEGVVSAEC 226
           ++  A   +   S + 
Sbjct: 248 KVVKAALPDATESQQG 263

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin
species: Mucor pusillus [TaxId: 4840]

 Score = 74.6 bits (182), Expect = 2e-15
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 325 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM-AFDLPPPRGP 383
           G ++       +    S  +     +       +   + +  V  SG    F + P  G 
Sbjct: 263 GYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPDGGN 322

Query: 384 LWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
            +I+G++F+  +  V+D GK RIGFA  A
Sbjct: 323 QFIVGNLFLRFFVNVYDFGKNRIGFAPLA 351

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  113 bits (284), Expect = 3e-29
 Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 4/193 (2%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFRE 105
           GK   I+YG+GS+ G    D V V ++V   Q    +T+E    F  A FDGI+G+ +  
Sbjct: 70  GKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPS 129

Query: 106 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 165
           +A   ++PV+DNM+ + LV++++FS +++R+        +  G +DP ++ G   +VPVT
Sbjct: 130 LASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQ---ESMLTLGAIDPSYYTGSLHWVPVT 186

Query: 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 225
            + YWQF +  + I       CEGGC AI+D+GTS L GP+  +  I  AIG       E
Sbjct: 187 VQQYWQFTVDSVTISGV-VVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGE 245

Query: 226 CKLVVSQYGDLIW 238
             +       +  
Sbjct: 246 FDIDCDNLSYMPT 258

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.2 bits (217), Expect = 4e-20
 Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 366
              +  I +   +  N  GE  IDCD +  MP V F I  K++ L+P  Y  +       
Sbjct: 226 SSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQDQG---- 281

Query: 367 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
            C SGF            WILGDVF+  Y++VFD     +G A+A
Sbjct: 282 FCTSGFQ----SENHSQKWILGDVFIREYYSVFDRANNLVGLAKA 322

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida albicans) [TaxId: 5476]

 Score =  109 bits (273), Expect = 2e-27
 Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 13/197 (6%)

Query: 46  GKSCEINYGSGSIS-GFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
               +I YG GS S G   +D V  G V +K+QV  +               GI+G+G++
Sbjct: 77  NTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTSI-------DQGILGVGYK 129

Query: 105 EIAVGDAVP-VWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
               G +   V   + +QG++++  +S +LN    A   G+I+FGGVD   + G    +P
Sbjct: 130 TNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAA--TGQIIFGGVDNAKYSGSLIALP 187

Query: 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVS 223
           VT     +  LG + +  ++  +       ++DSGT++      +  +I  A  G+    
Sbjct: 188 VTSDRELRISLGSVEVSGKT--INTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQD 245

Query: 224 AECKLVVSQYGDLIWDL 240
           +          +L  D+
Sbjct: 246 SNGNSFYEVDCNLSGDV 262

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida albicans) [TaxId: 5476]

 Score = 71.9 bits (175), Expect = 2e-14
 Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 8/106 (7%)

Query: 307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKI-FNLSPEQYILKTGEGIA 365
           ++++   N       N      +DC+      +V F        ++   ++         
Sbjct: 232 DQIIKAFNGKLTQDSNGNSFYEVDCN---LSGDVVFNFSKNAKISVPASEFAASLQGD-- 286

Query: 366 EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
                 +    L        ILGD F+   + V+D     I  A+ 
Sbjct: 287 --DGQPYDKCQLLFDVNDANILGDNFLRSAYIVYDLDDNEISLAQV 330

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score =  104 bits (259), Expect = 1e-25
 Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 15/191 (7%)

Query: 46  GKSCEINYGSG-SISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
            +   I YG   S  G F +D V  G + +K+Q F + T             GI+G+GF 
Sbjct: 77  NQDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTTTSV-------DQGIMGIGFT 129

Query: 105 EIAVGDAV--PVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYV 162
               G  +   V   + +QG++++  +S +LN +  +   G+I+FGGVD   + G  T +
Sbjct: 130 ADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDAS--TGKIIFGGVDNAKYTGTLTAL 187

Query: 163 PVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVV 222
           PVT     +  LG I     S          ++DSGT++         +    +G     
Sbjct: 188 PVTSSVELRVHLGSINFDGTS---VSTNADVVLDSGTTITYFSQSTADKFARIVGATWDS 244

Query: 223 SAECKLVVSQY 233
             E   + S  
Sbjct: 245 RNEIYRLPSCD 255

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 70.3 bits (171), Expect = 4e-14
 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 11/106 (10%)

Query: 307 EKVLSYINELCDSLPNPMGE-SIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIA 365
           +        +  +  +   E   +    +      +F  G K   +   + ILK  +   
Sbjct: 228 QSTADKFARIVGATWDSRNEIYRLPSCDLSGDAVFNFDQGVK-ITVPLSELILKDSDS-- 284

Query: 366 EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
            +C  G         R    ILGD F+   + V+D     I  A+ 
Sbjct: 285 SICYFGIS-------RNDANILGDNFLRRAYIVYDLDDKTISLAQV 323

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]

 Score =  104 bits (259), Expect = 1e-25
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 8/200 (4%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATR-EGSLTFLLARFDGIIGLGFR 104
           G   E+NY SG++SGFFS+D V VG++ +  +            T+  + FDGI+GLG++
Sbjct: 70  GTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGWK 129

Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV 164
           ++++G   P+   +  Q  +   +F+F+L         G +  GG++ + ++G  TY  +
Sbjct: 130 DLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHT--GFLTIGGIEERFYEGPLTYEKL 187

Query: 165 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSA 224
               YWQ     I +      +       IVDSGTS +  PT  + ++   +    V   
Sbjct: 188 NHDLYWQ-----ITLDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLDVIKVPFL 242

Query: 225 ECKLVVSQYGDLIWDLLVSG 244
              + +     L      S 
Sbjct: 243 PFYVTLCNNSKLPTFEFTSE 262

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]

 Score = 92.8 bits (229), Expect = 1e-21
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 366
              L+ + +  D +  P     +       +P   FT  +  + L PE Y+    +    
Sbjct: 224 TDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPG 283

Query: 367 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
           +C+   +  D P    P +ILGD FM  Y TVFD     +G A A
Sbjct: 284 LCMLNIIGLDFP---VPTFILGDPFMRKYFTVFDYDNHSVGIALA 325

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Bread mold (Rhizopus chinensis) [TaxId: 4843]

 Score =  101 bits (253), Expect = 8e-25
 Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 8/176 (4%)

Query: 46  GKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
           G++  I+YG GS  SG  ++DNV +G +++K Q    A RE + +F     DG++GLGF 
Sbjct: 70  GRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAA-SFASGPNDGLLGLGFD 128

Query: 105 EIAVGDAVP-VWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
            I     V    DN++ QGL+S  +F  +L +  +   GGE +FGG D   FKG  T VP
Sbjct: 129 TITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKNGG-GGEYIFGGYDSTKFKGSLTTVP 187

Query: 164 V-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
           +   +G+W   +    +G  +          I+D+GT+LL  P  +   +  A G 
Sbjct: 188 IDNSRGWWGITVDRATVGTST---VASSFDGILDTGTTLLILPNNIAASVARAYGA 240

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Bread mold (Rhizopus chinensis) [TaxId: 4843]

 Score = 87.3 bits (215), Expect = 8e-20
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 9/106 (8%)

Query: 307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 366
             + + +     +  N  G   I CD       + F+I    F +SP+  + +  +G   
Sbjct: 228 NNIAASVARAYGASDNGDGTYTISCDTSA-FKPLVFSINGASFQVSPDSLVFEEFQG--- 283

Query: 367 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
            CI+GF             I+GD F+   + VF+ G   +  A  A
Sbjct: 284 QCIAGFG-----YGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium vivax [TaxId: 5855]

 Score = 99.3 bits (246), Expect = 1e-23
 Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 8/192 (4%)

Query: 46  GKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEA-TREGSLTFLLARFDGIIGLGFR 104
           G   +I YGSG++ GFFS+D V +G + +  +      T +    +    FDGI+GLG++
Sbjct: 116 GTKVDITYGSGTVKGFFSKDLVTLGHLSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGWK 175

Query: 105 EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV 164
           ++++G   P+   +  Q  +   +F+F+L         G +  GG++ K ++G  TY  +
Sbjct: 176 DLSIGSIDPIVVELKNQNKIDNALFTFYLPVHD--VHAGYLTIGGIEEKFYEGNITYEKL 233

Query: 165 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSA 224
               YWQ +L                   IVDSGT+ +  P+  + +    +    V   
Sbjct: 234 NHDLYWQIDLDVHFGKQ-----TMEKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFL 288

Query: 225 ECKLVVSQYGDL 236
              +      ++
Sbjct: 289 PFYVTTCDNKEM 300

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium vivax [TaxId: 5855]

 Score = 98.9 bits (245), Expect = 2e-23
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 366
            + L+      + +  P     +       MP + F   +  + L PE Y+    E    
Sbjct: 270 SEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYMNPILEVDDT 329

Query: 367 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411
           +C+   +  D+       +ILGD FM  Y TVFD  K  +GFA A
Sbjct: 330 LCMITMLPVDID---SNTFILGDPFMRKYFTVFDYDKESVGFAIA 371

>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Length = 330

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Endothiapepsin
species: Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]

 Score = 97.7 bits (242), Expect = 3e-23
 Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 13/181 (7%)

Query: 43  SIRGKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGL 101
            + G +  I+YG GS  SG    D V VG + V  Q    A +  S     +  DG++GL
Sbjct: 69  LLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGL 128

Query: 102 GFREIAVGDAV---PVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGK 158
            F  +           +DN   +  +   VF+  L         G   FG +D   + G 
Sbjct: 129 AFSTLNTVSPTQQKTFFDNA--KASLDSPVFTADLGYHA----PGTYNFGFIDTTAYTGS 182

Query: 159 HTYVPV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 217
            TY  V TK+G+W++      +G+ +          I D+GT+LL  P  VV+     + 
Sbjct: 183 ITYTAVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVSAYWAQVS 240

Query: 218 G 218
           G
Sbjct: 241 G 241

>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Length = 330

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Endothiapepsin
species: Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]

 Score = 75.7 bits (185), Expect = 7e-16
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 7/90 (7%)

Query: 321 PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 380
            + +G  +  C    T+P+ +F +G     +  +          +  C  G         
Sbjct: 245 SSSVGGYVFPCS--ATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQ----SSA 298

Query: 381 RGPLWILGDVFMGVYHTVFDSG-KLRIGFA 409
              + I GDV +     VF+      +GFA
Sbjct: 299 GIGINIFGDVALKAAFVVFNGATTPTLGFA 328

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

 Score = 95.4 bits (236), Expect = 1e-22
 Identities = 53/202 (26%), Positives = 75/202 (37%), Gaps = 10/202 (4%)

Query: 46  GKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
           G +  I+YG GS  SG   +D V VG V    Q    A +  S        DG++GL F 
Sbjct: 68  GATWSISYGDGSSASGDVYKDKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFS 127

Query: 105 EIAVGDAVPVWDNMVE-QGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVP 163
            I      P        +  +SE +F+  L  +      G   FG  D   + G  TY  
Sbjct: 128 SINTVQPTPQKTFFDNVKSSLSEPIFAVALKHNA----PGVYDFGYTDSSKYTGSITYTD 183

Query: 164 VTK-KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVV 222
           V   +G+W F      IG+ S          I D+GT+LL     +V      + G    
Sbjct: 184 VDNSQGFWGFTADGYSIGSDS---SSDSITGIADTGTTLLLLDDSIVDAYYEQVNGASYD 240

Query: 223 SAECKLVVSQYGDLIWDLLVSG 244
           S++   V      L    +  G
Sbjct: 241 SSQGGYVFPSSASLPDFSVTIG 262

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

 Score = 80.4 bits (197), Expect = 2e-17
 Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 6/106 (5%)

Query: 307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 366
           + ++    E  +       +         ++P+ S TIGD    +  E            
Sbjct: 224 DSIVDAYYEQVNGASYDSSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVGN--G 281

Query: 367 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
               G              I GDVF+   + VFD+   R+GFA  A
Sbjct: 282 QTFGGIQ----SNSGIGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 83.6 bits (205), Expect = 2e-18
 Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 6/129 (4%)

Query: 290 EMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPM-----GESIIDCDRIPTMPNVSFTI 344
                 + +   +    +               P       +++ +      +PNV   +
Sbjct: 245 PDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGL 304

Query: 345 -GDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGK 403
            G   + ++ +  ++   +G A V             R P  ILG   M  +   FD  K
Sbjct: 305 DGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEK 364

Query: 404 LRIGFAEAA 412
            R+GF+   
Sbjct: 365 KRLGFSRLP 373

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 82.8 bits (203), Expect = 5e-18
 Identities = 31/220 (14%), Positives = 49/220 (22%), Gaps = 31/220 (14%)

Query: 46  GKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFIEA-------TREGSLTFLLARFDG 97
             +   N  SG+  +G  S              V                L  L     G
Sbjct: 80  CTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTG 139

Query: 98  IIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG 157
           + GL          + +   +     V+     F L              G V    F  
Sbjct: 140 VAGLAN------SGLALPAQVASAQKVA---NRFLLCLPTGGPGVAIFGGGPVPWPQFTQ 190

Query: 158 KHTYVPVTKKG---YWQFELGDILIGNQSTGV---CEGGCAAIVDSGTSLLAGPTPVVTE 211
              Y P+  KG           I++G+    V          ++ +    +     V   
Sbjct: 191 SMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRP 250

Query: 212 INHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVC 251
           +  A            L             V  + P  VC
Sbjct: 251 LMDAFTK--------ALAAQHANGAPVARAVEAVAPFGVC 282

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

 Score = 80.0 bits (196), Expect = 2e-17
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 321 PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 380
            +  G  + DC     +P+ S +I      +           G    C+ G         
Sbjct: 239 DSNAGGYVFDCS--TNLPDFSVSISGYTATVPGSLINYGP-SGDGSTCLGGIQ----SNS 291

Query: 381 RGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412
                I GD+F+   + VFDS   ++GFA  A
Sbjct: 292 GIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

 Score = 78.5 bits (192), Expect = 7e-17
 Identities = 48/177 (27%), Positives = 73/177 (41%), Gaps = 13/177 (7%)

Query: 46  GKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFR 104
           G +  I+YG GS  SG    D+V VG V    Q    A +  +        DG++GL F 
Sbjct: 68  GYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFS 127

Query: 105 EIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYV 162
            I      +   + + V+  L    +F+  L         G   FG +D   + G  TY 
Sbjct: 128 SINTVQPQSQTTFFDTVKSSLAQP-LFAVALKHQQ----PGVYDFGFIDSSKYTGSLTYT 182

Query: 163 PVTK-KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 218
            V   +G+W F +     G+Q       G + I D+GT+LL     VV++    + G
Sbjct: 183 GVDNSQGFWSFNVDSYTAGSQ----SGDGFSGIADTGTTLLLLDDSVVSQYYSQVSG 235

>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]} Length = 77

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Ameobapore A
domain: Ameobapore A
species: Entamoeba histolytica [TaxId: 5759]

 Score = 60.8 bits (147), Expect = 1e-12
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 186 VCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE-----GVVSAECKLVVSQYGDLIWDL 240
           +C   C  ++++  +LL        ++   I        G ++  C  V+    D +  L
Sbjct: 4   LCNL-CTGLINTLENLLTTKG--ADKVKDYISSLCNKASGFIATLCTKVLDFGIDKLIQL 60

Query: 241 LVSGLLPEKVCQQIGLC 257
           +   +    +C +I  C
Sbjct: 61  IEDKVDANAICAKIHAC 77

>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]} Length = 77

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Ameobapore A
domain: Ameobapore A
species: Entamoeba histolytica [TaxId: 5759]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 283 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPM 324
             +C+ C   +  ++  L   +  +KV  YI+ LC+     +
Sbjct: 2   EILCNLCTGLINTLE-NLLTTKGADKVKDYISSLCNKASGFI 42

>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: Saposin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (143), Expect = 4e-12
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 187 CEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE-----GVVSAECKLVVSQYGDLIWDLL 241
           CE  C  +V   T L+        EI  A           +S EC+ VV  YG  I  +L
Sbjct: 4   CEV-CEFLVKEVTKLIDNNK-TEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSIL 61

Query: 242 VSGLLPEKVCQQIGLCA 258
           +  + PE VC  + LC+
Sbjct: 62  LEEVSPELVCSMLHLCS 78

>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: Saposin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 6e-09
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 286 CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDC 331
           C  CE  V  V   +   +T++++L   +++C  LP  + E   + 
Sbjct: 4   CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEV 49

>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]} Length = 78

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: NK-lysin, NKL
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 57.7 bits (139), Expect = 2e-11
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 186 VCEGGCAAIVDSGTSLLAGP---TPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLV 242
            CE  C  I+     ++        V    +       ++   CK ++  +   I   ++
Sbjct: 3   FCES-CRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDIL 61

Query: 243 SGLLPEKVCQQIGLC 257
           +G  P+ +C  I +C
Sbjct: 62  TGKKPQAICVDIKIC 76

>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]} Length = 78

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: NK-lysin, NKL
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 40.8 bits (95), Expect = 1e-05
 Identities = 7/42 (16%), Positives = 19/42 (45%)

Query: 285 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGE 326
            C +C   +  +++ +  +  ++ V    +++CD L    G 
Sbjct: 3   FCESCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLKILRGL 44

>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Saposin B
domain: Saposin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 3e-07
 Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 186 VCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE-----GVVSAECKLVVSQYGDLIWDL 240
           VC+  C  +V    + +   +  V  +   +  E       ++  CK  +SQY ++   +
Sbjct: 3   VCQD-CIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADICKNYISQYSEIAIQM 61

Query: 241 LVSGLLPEKVCQQIGLC 257
           +   + P+++C  +G C
Sbjct: 62  M-MHMQPKEICALVGFC 77

>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Saposin B
domain: Saposin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 285 VCSACEMAVVWVQNQLKQKQTKEKVL-SYINELCDSLPNPM 324
           VC  C   V  +Q  ++   T  + L  ++ E CD L   M
Sbjct: 3   VCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGM 43

>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: Granulysin, NKG5 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 191 CAAIVDSGTSLLAGPTPVVTEINHAIGGE-----GVVSAECKLVVSQYGDLIWDLLVSGL 245
           C  IV     ++  PT     +++A               C+  + +Y   +   LV+G 
Sbjct: 7   CLTIVQKLKKMVDKPT--QRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGE 64

Query: 246 LPEKVCQQI 254
             +++C+ +
Sbjct: 65  TAQQICEDL 73

>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: Granulysin, NKG5 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (78), Expect = 0.003
 Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 286 CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPM 324
              C   V  ++ ++  K T+  V +    +C +  +  
Sbjct: 4   YRTCLTIVQKLK-KMVDKPTQRSVSNAATRVCRTGRSRW 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	412
g1htr.1	372	Pepsin(ogen) {Human (Homo sapiens), progastricsin	100.0
d3psga_	370	Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1dpja_	329	Acid protease {Baker's yeast (Saccharomyces cerevi	100.0
d1smra_	335	Chymosin (synonym: renin) {Mouse (Mus musculus) [T	100.0
d2apra_	325	Acid protease {Bread mold (Rhizopus chinensis) [Ta	100.0
d1hrna_	337	Chymosin (synonym: renin) {Human (Homo sapiens) [T	100.0
d1am5a_	324	Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId:	100.0
d1miqa_	373	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	100.0
d1oewa_	330	Endothiapepsin {Chestnut blight fungus (Endothia p	100.0
d1j71a_	334	Acid protease {Yeast (Candida tropicalis) [TaxId:	100.0
g1lya.1	338	Cathepsin D {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1qdma2	337	Plant acid proteinase, phytepsin {Barley (Hordeum	100.0
d1eaga_	342	Acid protease {Yeast (Candida albicans) [TaxId: 54	100.0
d1mppa_	357	Pepsin {Mucor pusillus [TaxId: 4840]}	100.0
g1b5f.1	326	Plant acid proteinase, phytepsin {Cynara carduncul	100.0
d1izea_	323	Acid protease {Fungus (Aspergillus oryzae) [TaxId:	100.0
d2bjua1	329	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	100.0
d1bxoa_	323	Acid protease {Fungus (Penicillium janthinellum),	100.0
d1wkra_	340	Acid protease {Irpex lacteus (Polyporus tulipifera	100.0
d3cmsa_	323	Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId	100.0
d2qp8a1	387	beta-secretase (memapsin) {Human (Homo sapiens) [T	100.0
d1t6ex_	381	Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu	100.0
d1qdma1	104	(Pro)phytepsin {Barley (Hordeum vulgare) [TaxId: 4	99.65
d2gtga1	78	Saposin C {Human (Homo sapiens) [TaxId: 9606]}	97.41
d1of9a_	77	Ameobapore A {Entamoeba histolytica [TaxId: 5759]}	97.15
d1of9a_	77	Ameobapore A {Entamoeba histolytica [TaxId: 5759]}	97.13
d2gtga1	78	Saposin C {Human (Homo sapiens) [TaxId: 9606]}	96.98
d1n69a_	78	Saposin B {Human (Homo sapiens) [TaxId: 9606]}	96.95
d1nkla_	78	NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]}	96.93
d1nkla_	78	NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]}	96.87
d1n69a_	78	Saposin B {Human (Homo sapiens) [TaxId: 9606]}	96.72
d1l9la_	74	Granulysin, NKG5 protein {Human (Homo sapiens) [Ta	96.38
d1l9la_	74	Granulysin, NKG5 protein {Human (Homo sapiens) [Ta	95.79

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.2e-52  Score=417.60  Aligned_cols=303  Identities=37%  Similarity=0.707  Sum_probs=272.2

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+-..+||||+++||+|.    +.|..+..|+|++|+|++..+++|.+.|++|++.|.++.|++.+++..+.++
T Consensus        64 iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~~~~~~~~Yg~Gs~~G~~~~d~~~~~~~~~~~~  143 (370)
T d3psga_          64 IGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQ  143 (370)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEE
T ss_pred             EcCCCeEEEEEEeCCCCCeEEECccCCCcccccccccCCCcccccccCCCcEEEEeCCceEEEEEEEEEEeeeceeeeee
Confidence            689999999999999999999997    3567789999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145           78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG  157 (412)
Q Consensus        78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g  157 (412)
                      .||++....+..+.....+||+|||++..+.....+++++|+++|+|++++||+|+.+..+  .+|.|+|||+|++++.|
T Consensus       144 ~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~--~~g~l~~Gg~d~~~~~~  221 (370)
T d3psga_         144 IFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD--SGSVVLLGGIDSSYYTG  221 (370)
T ss_dssp             EEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-------CEEEEETCCCGGGBSS
T ss_pred             EEEEEeeccCceecccccccccccccCcccccCCCchhhhhhhhcccccceeEEEeecCCC--CCceEecCCcCchhccc
Confidence            9999998777666677889999999998887788899999999999999999999987643  37999999999999999


Q ss_pred             CceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhH
Q 015145          158 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLI  237 (412)
Q Consensus       158 ~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  237 (412)
                      ++.|+|+.+..+|.+.++++.+++..+. ......++|||||+++++|.+++++|.+++++..                 
T Consensus       222 ~l~~~p~~~~~~w~v~~~~i~v~g~~~~-~~~~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~-----------------  283 (370)
T d3psga_         222 SLNWVPVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASE-----------------  283 (370)
T ss_dssp             CCEEEECSEETTEEEEECEEESSSSEEE-CTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEE-----------------
T ss_pred             ceeEEeecccceEEEEEeeEEeCCeEEe-cCCCccEEEecCCceEeCCHHHHHHHHHHhCCee-----------------
Confidence            9999999999999999999999998875 3456889999999999999999999999997651                 


Q ss_pred             HHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhc
Q 015145          238 WDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELC  317 (412)
Q Consensus       238 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c  317 (412)
                                                                                                      
T Consensus       284 --------------------------------------------------------------------------------  283 (370)
T d3psga_         284 --------------------------------------------------------------------------------  283 (370)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEE
Q 015145          318 DSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHT  397 (412)
Q Consensus       318 ~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yv  397 (412)
                          ...+.|.++|.....+|+|+|+|+|+++.|+|++|+++..    ..|.+.+...+.+...++.||||++|||++|+
T Consensus       284 ----~~~~~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~yi~~~~----~~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~  355 (370)
T d3psga_         284 ----NSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDD----DSCTSGFEGMDVPTSSGELWILGDVFIRQYYT  355 (370)
T ss_dssp             ----CTTCCEECCGGGGGGCCCEEEEETTEEEEECHHHHEEECS----SCEEESEEEECCCTTSCCEEEECHHHHTTEEE
T ss_pred             ----ecCCcEEEeccccCCCceEEEEECCEEEEEChHHeEEEcC----CeEEEEEEEcccCCCCCCcEEECHHhhcCEEE
Confidence                2346788999988889999999999999999999998743    36999998887666677899999999999999


Q ss_pred             EEeCCCCeEEEEecC
Q 015145          398 VFDSGKLRIGFAEAA  412 (412)
Q Consensus       398 vfD~e~~rIGfa~~~  412 (412)
                      |||++++||||||+|
T Consensus       356 vfD~~~~~IGfAp~a  370 (370)
T d3psga_         356 VFDRANNKVGLAPVA  370 (370)
T ss_dssp             EEETTTTEEEEEEBC
T ss_pred             EEECCCCEEEEEecC
Confidence            999999999999986

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]

Probab=100.00  E-value=6.5e-51  Score=397.17  Aligned_cols=304  Identities=34%  Similarity=0.642  Sum_probs=272.6

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      ||||+|.+....||||+++||+|+    +.|..+..|+|++|+|++..++.+++.|++|++.|.+++|++++++..+.++
T Consensus        21 iGtP~q~~~~~iDTGSs~~Wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~~~~~~~y~~gs~~G~~~~D~~~~g~~~~~~~  100 (329)
T d1dpja_          21 LGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQ  100 (329)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred             EeCCCeEEEEEEECCcccEEEECCCCCCccccCCCcCCcccCCceeECCeeEEEEccCceEEEEEEEEEEEecceEEeeE
Confidence            689999999999999999999987    2466789999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCC-CCCCCcEEEeCCCCCCCee
Q 015145           78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDP-DAEEGGEIVFGGVDPKHFK  156 (412)
Q Consensus        78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~-~~~~~G~l~fGg~D~~~~~  156 (412)
                      .|+++....+..+.....+|++|||+...+.....+.+.+|..+++|.+++||+|+.+.. +...+|.|+|||+|++++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~Gi~Glg~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~~~~~  180 (329)
T d1dpja_         101 DFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFK  180 (329)
T ss_dssp             EEEEEEECCHHHHTTCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEE
T ss_pred             EEEEEeeccCccccccccccccccccCccccccCCchhhhHhhccCcccceEEEEEEecCCCcCCCCceECCCCchhhcc
Confidence            999999877666777788999999998877767778899999999999999999997643 2345799999999999999


Q ss_pred             cCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhh
Q 015145          157 GKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDL  236 (412)
Q Consensus       157 g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  236 (412)
                      ++++|+|+....+|.|.++++.+++..+.  ..+..++||||++++++|.++++++.+++++..                
T Consensus       181 ~~~~~~~~~~~~~~~v~~~~i~v~~~~~~--~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~----------------  242 (329)
T d1dpja_         181 GDITWLPVRRKAYWEVKFEGIGLGDEYAE--LESHGAAIDTGTSLITLPSGLAEMINAEIGAKK----------------  242 (329)
T ss_dssp             EEEEEEECSSBTTBEEEEEEEEETTEEEE--CSSCEEEECTTCSCEEECHHHHHHHHHHHTCEE----------------
T ss_pred             CceeEecccccceeEEEEeeEEECCeEee--eeecccccCcccceeeCCHHHHHHHHHHhCCcc----------------
Confidence            99999999999999999999999999875  456789999999999999999999999996541                


Q ss_pred             HHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhh
Q 015145          237 IWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINEL  316 (412)
Q Consensus       237 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~  316 (412)
                                                                                                      
T Consensus       243 --------------------------------------------------------------------------------  242 (329)
T d1dpja_         243 --------------------------------------------------------------------------------  242 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceE
Q 015145          317 CDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH  396 (412)
Q Consensus       317 c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y  396 (412)
                           ...+.|.++|+...++|+|+|+|+|.+|.|+|++|+++..    +.|++.+...+.+....+.+|||.+|||++|
T Consensus       243 -----~~~~~~~~~c~~~~~~P~i~f~f~g~~~~l~p~~y~~~~~----~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y  313 (329)
T d1dpja_         243 -----GWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVS----GSCISAITPMDFPEPVGPLAIVGDAFLRKYY  313 (329)
T ss_dssp             -----CTTSSEEECGGGGGGCCCEEEEETTEEEEECTTTSEEEET----TEEEECEEECCCCTTTCSEEEECHHHHTTEE
T ss_pred             -----ccceeEEEeccccCccceEEEEECCEEEEECHHHeEEecC----CcEEEEEEECccCCCCCCcEEEcHHhhCcEE
Confidence                 2345688999988889999999999999999999998753    3699999887766666778999999999999


Q ss_pred             EEEeCCCCeEEEEecC
Q 015145          397 TVFDSGKLRIGFAEAA  412 (412)
Q Consensus       397 vvfD~e~~rIGfa~~~  412 (412)
                      +|||+|++|||||||.
T Consensus       314 ~vfD~~~~~igfA~a~  329 (329)
T d1dpja_         314 SIYDLGNNAVGLAKAI  329 (329)
T ss_dssp             EEEETTTTEEEEEEEC
T ss_pred             EEEECCCCEEEEEEeC
Confidence            9999999999999984

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.9e-51  Score=398.45  Aligned_cols=307  Identities=35%  Similarity=0.709  Sum_probs=266.9

Q ss_pred             cccccceeeecCccCccceEEecC------CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEe
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV------PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVK   75 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~------~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~   75 (412)
                      +|||+|.+....||||+++||+|+      ..|..|+.|+|++|+|++..++.+.+.|++|++.|.+++|++++++.+..
T Consensus        23 iGtP~Q~~~l~~DTGSs~~Wv~~~~C~~~~~~c~~~~~f~~~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v~~~~~~~~  102 (335)
T d1smra_          23 IGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGIHSLYESSDSSSYMENGDDFTIHYGSGRVKGFLSQDSVTVGGITVT  102 (335)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEBTTCCTTCGGGGGSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred             ECCCCeEEEEEEECCcccEEEEcCCCCCccccccCCCcCCCccCcccccCCCcEEEEecCceEEEEEEEEEEEecccccc
Confidence            689999999999999999999986      24677899999999999999999999999999999999999999999987


Q ss_pred             eeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145           76 DQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF  155 (412)
Q Consensus        76 ~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~  155 (412)
                      ++.+++.. .....+....++|++|||+.........+++.+|++++.|.+++||+|+.+.. ....|.|+|||+|++++
T Consensus       103 ~~~~~~~~-~~~~~~~~~~~~Gi~glg~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~-~~~~g~l~~G~~d~~~~  180 (335)
T d1smra_         103 QTFGEVTQ-LPLIPFMLAQFDGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGP-HLLGGEVVLGGSDPQHY  180 (335)
T ss_dssp             EEEEEEEE-CCHHHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCBSSSEEEEEECCSS-SSCCEEEEESSCCGGGE
T ss_pred             cEEEEEEe-cccccccccccccccccccccccccCCCchHHHHHHhcCccccceeEEeccCC-CccceeEeccccCcccc
Confidence            66554444 44445667778999999998877667788999999999999999999998764 33479999999999999


Q ss_pred             ecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchh
Q 015145          156 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGD  235 (412)
Q Consensus       156 ~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  235 (412)
                      .|+++|+|+.+..+|.|.+++|.+++..+. ...+..++|||||+++++|.++++++.+++++..               
T Consensus       181 ~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~-~~~~~~~iiDSGtt~~~lp~~~~~~l~~~~~~~~---------------  244 (335)
T d1smra_         181 QGDFHYVSLSKTDSWQITMKGVSVGSSTLL-CEEGCEVVVDTGSSFISAPTSSLKLIMQALGAKE---------------  244 (335)
T ss_dssp             EEEEEEEECSBTTTTEEEEEEEEETTSCCB-CTTCEEEEECTTBSSEEECHHHHHHHHHHHTCEE---------------
T ss_pred             cCceeeeecccccceEEEEeEEEECCeeEe-ccCCceEEEeCCCCcccCCHHHHHHHHHHhCCee---------------
Confidence            999999999999999999999999998774 3457889999999999999999999999997541               


Q ss_pred             hHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhh
Q 015145          236 LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINE  315 (412)
Q Consensus       236 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~  315 (412)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (335)
T d1smra_         245 --------------------------------------------------------------------------------  244 (335)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccce
Q 015145          316 LCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY  395 (412)
Q Consensus       316 ~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~  395 (412)
                            .....|.++|...+.+|+|+|.|+|+++.|+|++|+++..+....+|++.++..+.++..++.||||.+|||++
T Consensus       245 ------~~~~~~~~~c~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~  318 (335)
T d1smra_         245 ------KRLHEYVVSCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGPVWVLGATFIRKF  318 (335)
T ss_dssp             ------EETTEEEEEGGGGGGSCCEEEEETTEEEEECHHHHBTT----CCCEEEBSEEECCCCTTTCSCEEECHHHHTTE
T ss_pred             ------ccCCceeecccccCCCCccEEEECCeEEEEChHHeEEEeccCCCCEEEEEEEecCcCCCCCCcEEECHHHhCcE
Confidence                  12335778998888899999999999999999999987666677899999998876666678899999999999


Q ss_pred             EEEEeCCCCeEEEEecC
Q 015145          396 HTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       396 yvvfD~e~~rIGfa~~~  412 (412)
                      |+|||+|++||||||||
T Consensus       319 yvvfD~~~~~iGfA~ak  335 (335)
T d1smra_         319 YTEFDRHNNRIGFALAR  335 (335)
T ss_dssp             EEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCEEEEEEcC
Confidence            99999999999999997

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Bread mold (Rhizopus chinensis) [TaxId: 4843]

Probab=100.00  E-value=1.9e-49  Score=388.33  Aligned_cols=296  Identities=28%  Similarity=0.504  Sum_probs=258.5

Q ss_pred             cccccceeeecCccCccceEEecC--CCC-CCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV--PIS-GFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~--~~c-~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|++....||||+++||+++  ..| ..++.|+|++|+|++..++.+.+.|++|+ +.|.+++|++++++..+.++
T Consensus        23 iGtP~Q~~~v~vDTGS~~~Wv~~~~C~~c~~~~~~y~~~~SsT~~~~~~~~~~~y~~g~~~~G~~~~D~~~~~~~~~~~~  102 (325)
T d2apra_          23 IGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTKYDPNQSSTYQADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQ  102 (325)
T ss_dssp             ETTTTEEEEEEEETTCCCCEEEBTTCSSCCTTSCCBCGGGCTTCEEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEE
T ss_pred             EeCCCEEEEEEEECCCCcEEEeCCCCCccccCCCccCcccCCceeECCeEEEEEeCCCCeEEEEEEeeeEEeeeeeccCc
Confidence            689999999999999999999987  344 34678999999999999999999999997 89999999999999999999


Q ss_pred             EEEEEEeecCcccccCCccEEEeccCCcccc-CCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCee
Q 015145           78 VFIEATREGSLTFLLARFDGIIGLGFREIAV-GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFK  156 (412)
Q Consensus        78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~-~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~  156 (412)
                      .|+++..... ......++|++|||+..++. ....+++.+|+++|+|.+++||+|+.+.. ....|.|+|||+|+++++
T Consensus       103 ~~~~~~~~~~-~~~~~~~~GilGlg~~~~~~~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~-~~~~g~l~~Gg~d~~~~~  180 (325)
T d2apra_         103 TIELAKREAA-SFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAK-NGGGGEYIFGGYDSTKFK  180 (325)
T ss_dssp             EEEEEEEECH-HHHTSSCSEEEECSCGGGCSSTTCCCHHHHHHHTTSCSSSEEEEEECCGG-GTCCEEEEETCCCGGGBC
T ss_pred             ceeeeeeecc-cccccccCcccccccccccccccCCcchhHHHhhccccceeEEEEeccCC-CCCCeEEEecCCCchhhc
Confidence            9999987643 34456789999999987764 34677999999999999999999997754 234799999999999999


Q ss_pred             cCceEeecc-ccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchh
Q 015145          157 GKHTYVPVT-KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGD  235 (412)
Q Consensus       157 g~l~~~p~~-~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  235 (412)
                      |+++|+|+. +.++|.|.++++.+++..+.   .+..++|||||+++++|.+++++|.+.+++..               
T Consensus       181 ~~~~~~~~~~~~~~~~v~l~~i~i~~~~~~---~~~~~iiDSGt~~~~lp~~~~~~l~~~~~~~~---------------  242 (325)
T d2apra_         181 GSLTTVPIDNSRGWWGITVDRATVGTSTVA---SSFDGILDTGTTLLILPNNIAASVARAYGASD---------------  242 (325)
T ss_dssp             SCCEEEECBCTTSSCEEEECEEEETTEEEE---CCEEEEECTTCSSEEEEHHHHHHHHHHHTCEE---------------
T ss_pred             cceeeEeecCCCceEEEEEeeEEECCEeec---ceeeeeccCCCccccCCHHHHHHHHHHhCCcc---------------
Confidence            999999986 56799999999999999874   56789999999999999999999999996541               


Q ss_pred             hHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhh
Q 015145          236 LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINE  315 (412)
Q Consensus       236 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~  315 (412)
                                                                                                      
T Consensus       243 --------------------------------------------------------------------------------  242 (325)
T d2apra_         243 --------------------------------------------------------------------------------  242 (325)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccce
Q 015145          316 LCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY  395 (412)
Q Consensus       316 ~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~  395 (412)
                            ...+.|.++|+. ..+|+|+|+|+|.+++|+|++|+++..+   +.|++.|+..+     .+.+|||.+|||++
T Consensus       243 ------~~~~~~~~~C~~-~~~p~i~f~f~g~~~~i~~~~y~~~~~~---~~C~~~i~~~~-----~~~~iLG~~flr~~  307 (325)
T d2apra_         243 ------NGDGTYTISCDT-SAFKPLVFSINGASFQVSPDSLVFEEFQ---GQCIAGFGYGN-----WGFAIIGDTFLKNN  307 (325)
T ss_dssp             ------CSSSCEEECSCG-GGCCCEEEEETTEEEEECGGGGEEEEET---TEEEESEEEES-----SSSEEECHHHHTTE
T ss_pred             ------cCCCceeecccC-CCCCcEEEEECCEEEEEChHHeEEecCC---CEEEEEEccCC-----CCCEEECHHHhCcE
Confidence                  234678999985 4679999999999999999999987543   48999998643     36789999999999


Q ss_pred             EEEEeCCCCeEEEEecC
Q 015145          396 HTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       396 yvvfD~e~~rIGfa~~~  412 (412)
                      |+|||+|++||||||+|
T Consensus       308 y~vfD~~~~~IGfAp~a  324 (325)
T d2apra_         308 YVVFNQGVPEVQIAPVA  324 (325)
T ss_dssp             EEEEETTTTEEEEEEBC
T ss_pred             EEEEECCCCEEeEEEcC
Confidence            99999999999999997

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-49  Score=387.94  Aligned_cols=307  Identities=34%  Similarity=0.697  Sum_probs=271.2

Q ss_pred             cccccceeeecCccCccceEEecC--C----CCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEe
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV--P----ISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVK   75 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~--~----~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~   75 (412)
                      +|||+|.+....||||+++||++.  .    .|..|..|+|++|+|++..++.+.+.|++|++.|.++.|++++++..+.
T Consensus        23 iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~~~~~~g~~~G~~~~d~~~~~~~~~~  102 (337)
T d1hrna_          23 IGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT  102 (337)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHSSCCBCGGGCSSCEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred             EeCCCEEEEEEEECCCcceEEEcCCCCCcccccccCCCCChhhCCceEECCccEEEEecCcEEEEEEEEeeeeecCceee
Confidence            689999999999999999999986  1    2566889999999999999999999999999999999999999999998


Q ss_pred             eeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCC--CCCCcEEEeCCCCCC
Q 015145           76 DQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPD--AEEGGEIVFGGVDPK  153 (412)
Q Consensus        76 ~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~--~~~~G~l~fGg~D~~  153 (412)
                      ++.+++.... ...+.....+|++|||+.........+++.+|++++.|.+++|++++.+...  ....|.|+||++|++
T Consensus       103 ~~~~~~~~~~-~~~~~~~~~~GilGl~~~~~~~~~~~~~~~~l~~~~~i~~~~f~~~l~~~~~~~~~~~g~l~~G~~d~~  181 (337)
T d1hrna_         103 QMFGEVTEMP-ALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQ  181 (337)
T ss_dssp             EEEEEEEECC-HHHHTTCSSCEEEECSCGGGCGGGCCCHHHHHHTTTCBSSSEEEEEECCCCC---CCCEEEEETSCCGG
T ss_pred             eEEEEEEecc-ccccccccccccccccccccccCCCCcchhhHhhcCCCccceeeEEeccccCCCcccCceEEccccChh
Confidence            7777666544 4456667889999999987766678889999999999999999999987642  234799999999999


Q ss_pred             CeecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhc
Q 015145          154 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQY  233 (412)
Q Consensus       154 ~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~  233 (412)
                      ++.|++.|+|+.+..+|.+.++++.+++.... ......++||||++++++|.+++++|.+.+++.              
T Consensus       182 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~iiDSGtt~~~lp~~~~~~l~~~~~~~--------------  246 (337)
T d1hrna_         182 HYEGNFHYINLIKTGVWQIQMKGVSVGSSTLL-CEDGCLALVDTGASYISGSTSSIEKLMEALGAK--------------  246 (337)
T ss_dssp             GEEEEEEEEEBSSTTSCEEEECEEEETTEEEE-STTCEEEEECTTCSSEEECHHHHHHHHHHHTCE--------------
T ss_pred             hcCCceeeeeeeccceeEEeecceeccccccc-cccCcceEEeCCCcceeccHHHHHHHHHHhCCc--------------
Confidence            99999999999999999999999999998764 355678999999999999999999999999765              


Q ss_pred             hhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHh
Q 015145          234 GDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYI  313 (412)
Q Consensus       234 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~  313 (412)
                                                                                                      
T Consensus       247 --------------------------------------------------------------------------------  246 (337)
T d1hrna_         247 --------------------------------------------------------------------------------  246 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEcccccc
Q 015145          314 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMG  393 (412)
Q Consensus       314 ~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~  393 (412)
                              ...+.|.++|+..+.+|+|+|+|+|++|+|+|++|+++..+.....|++.+...+.+...++.||||.+|||
T Consensus       247 --------~~~~~~~~~c~~~~~~P~l~f~f~g~~~~l~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~ILG~~fl~  318 (337)
T d1hrna_         247 --------KRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIR  318 (337)
T ss_dssp             --------ECSSCEEEETTTGGGCCCEEEEETTEEEEECHHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHT
T ss_pred             --------ccccceeeeccccCCCCceeEEECCEEEEEChHHeEEEecCCCCCEEEEEEEcCCcCCCCCCCEEECHHhhC
Confidence                    123468899998889999999999999999999999887666677999999988776667788999999999


Q ss_pred             ceEEEEeCCCCeEEEEecC
Q 015145          394 VYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       394 ~~yvvfD~e~~rIGfa~~~  412 (412)
                      ++|+|||+|++||||||||
T Consensus       319 ~~y~vfD~~~~~IGfA~ak  337 (337)
T d1hrna_         319 KFYTEFDRRNNRIGFALAR  337 (337)
T ss_dssp             TEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEECCCCEEEEEEcC
Confidence            9999999999999999997

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Atlantic cod (Gadus morhua) [TaxId: 8049]

Probab=100.00  E-value=2.4e-49  Score=385.27  Aligned_cols=301  Identities=33%  Similarity=0.589  Sum_probs=267.9

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+....||||+++||+|.    +.|..+..|+|++|+|++..++.+.+.|++|++.|.++.|++++++.++.+.
T Consensus        20 iGtP~q~~~~~~DTGS~~~Wv~~~~C~~~~~~~~~~f~p~~Sst~~~~~~~~~~~y~~g~~~G~~~~d~~~~~~~~~~~~   99 (324)
T d1am5a_          20 IGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVETGKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQ   99 (324)
T ss_dssp             ETTTTEEEEEEEETTCCCEEECBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEESSSSCEEEE
T ss_pred             EcCCCeEEEEEEECCCcceEEecCCCCccccCCCCCCCcccCCceeECCcceEEEecCCceEEEEEEeecccCcccceeE
Confidence            689999999999999999999986    2466789999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145           78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG  157 (412)
Q Consensus        78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g  157 (412)
                      .|+++....+..+.....+|++|||++..+.....+++++++++++|++++||+|+.+..  ..+|.|+|||+|++++.+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~Gi~gLg~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~l~~~~--~~~g~l~~Gg~d~~~~~~  177 (324)
T d1am5a_         100 ELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGG--ANGSEVMLGGVDNSHYTG  177 (324)
T ss_dssp             EEEEEEECCSTTTTTCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEECCSTT--CSCEEEEESSCCGGGBCS
T ss_pred             EEEEeeeeccceeecccccccccccCcccccCCCCcHHHHHHhccCcccceEEEEecCCC--CCCceEEeeccccccccC
Confidence            999999987766667788999999998877777888999999999999999999998654  247999999999999999


Q ss_pred             CceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhH
Q 015145          158 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLI  237 (412)
Q Consensus       158 ~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  237 (412)
                      +++|+|+.+..+|.+.++++.+++..+.  ..+..++||||++++++|.++++++.+.++...                 
T Consensus       178 ~~~~~p~~~~~~~~v~~~~~~~~~~~~~--~~~~~~iiDsGts~~~lp~~~~~~l~~~i~~~~-----------------  238 (324)
T d1am5a_         178 SIHWIPVTAEKYWQVALDGITVNGQTAA--CEGCQAIVDTGTSKIVAPVSALANIMKDIGASE-----------------  238 (324)
T ss_dssp             CCEEEEEEEETTEEEEECEEEETTEECC--CCCEEEEECTTCSSEEECTTTHHHHHHHHTCEE-----------------
T ss_pred             ceEEeeccccceEEEEEeeEEeCCcccc--cCCcceeeccCcccccCCHHHHHHHHHHhCCcc-----------------
Confidence            9999999999999999999999999875  467889999999999999999999999997651                 


Q ss_pred             HHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhc
Q 015145          238 WDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELC  317 (412)
Q Consensus       238 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c  317 (412)
                                                                                                      
T Consensus       239 --------------------------------------------------------------------------------  238 (324)
T d1am5a_         239 --------------------------------------------------------------------------------  238 (324)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEE
Q 015145          318 DSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHT  397 (412)
Q Consensus       318 ~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yv  397 (412)
                           ..+.+...|....++|+|+|+|+|.++.|+|++|+...    ...|...+...+.+....+.+|||.+|||++|+
T Consensus       239 -----~~~~~~~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~----~~~c~~~i~~~~~~~~~~~~~ILG~~fl~~~y~  309 (324)
T d1am5a_         239 -----NQGEMMGNCASVQSLPDITFTINGVKQPLPPSAYIEGD----QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYT  309 (324)
T ss_dssp             -----CCCCEECCTTSSSSSCCEEEEETTEEEEECHHHHEEES----SSCEEECEEECCSCCSSSCEEEECHHHHHHEEE
T ss_pred             -----cCCcccccccccccCCceEEEECCEEEEECHHHhEecC----CCeEEEEEEecCcCCCCCCCEEECHHhhcCEEE
Confidence                 12234445555568999999999999999999998653    347999999887666667789999999999999


Q ss_pred             EEeCCCCeEEEEecC
Q 015145          398 VFDSGKLRIGFAEAA  412 (412)
Q Consensus       398 vfD~e~~rIGfa~~~  412 (412)
                      +||+|++||||||||
T Consensus       310 vfD~~~~~igfA~aa  324 (324)
T d1am5a_         310 IYDRTNNKVGFAPAA  324 (324)
T ss_dssp             EEETTTTEEEEEEBC
T ss_pred             EEECCCCEEEEEEcC
Confidence            999999999999997

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium vivax [TaxId: 5855]

Probab=100.00  E-value=6e-49  Score=390.89  Aligned_cols=300  Identities=25%  Similarity=0.472  Sum_probs=260.6

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+.+..||||+++||||.    +.|..|+.|+|++|+|++..++.+++.|++|++.|.+++|+|++++..+.++
T Consensus        68 iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~SsT~~~~~~~~~~~y~~G~~~G~~~~D~v~ig~~~~~~~  147 (373)
T d1miqa_          68 VGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMPYK  147 (373)
T ss_dssp             ETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred             ECCCCEEEEEEEECCchheEEECCCCCCccccCCCccCCCCCCceeECCccEEEEeCCcEEEEEEEEEEEEEcCcceEee
Confidence            689999999999999999999987    4678889999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecC-cccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCee
Q 015145           78 VFIEATREGS-LTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFK  156 (412)
Q Consensus        78 ~fg~~~~~~~-~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~  156 (412)
                      .|+++..... ..+.....+|++|+++.........+++.++++++.+.+++|++|+.+..  ...|.|+|||+|++++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~--~~~g~l~~Gg~d~~~~~  225 (373)
T d1miqa_         148 FIEVTDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHD--VHAGYLTIGGIEEKFYE  225 (373)
T ss_dssp             EEEEEECGGGTTHHHHSCCCEEEECSSCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTC--TTEEEEEESSCCGGGEE
T ss_pred             EEEEEeccccCccccccccccccccccccccCCCccceehhhhhhhccccceEEEEeccCC--CCCceeeccCCCchhcc
Confidence            9988876532 23456678999999999888778889999999999999999999998764  24789999999999999


Q ss_pred             cCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhh
Q 015145          157 GKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDL  236 (412)
Q Consensus       157 g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  236 (412)
                      |++.|+|+.+..+|.+.++ +.+++...    ....++|||||+++++|.++++++.+++++..                
T Consensus       226 g~~~~~pv~~~~~w~i~l~-~~~~~~~~----~~~~~iiDTGTs~~~lP~~~~~~l~~~i~~~~----------------  284 (373)
T d1miqa_         226 GNITYEKLNHDLYWQIDLD-VHFGKQTM----EKANVIVDSGTTTITAPSEFLNKFFANLNVIK----------------  284 (373)
T ss_dssp             EEEEEEEBSSSSSSEEEEE-EEETTEEE----EEEEEEECTTBSSEEECHHHHHHHHHHHTCEE----------------
T ss_pred             ceeeEEeccccceEEEEEE-EEECcEec----CCcceEeccCCceeccCHHHHHHHHHHhCCee----------------
Confidence            9999999999999999985 66666654    34679999999999999999999999997651                


Q ss_pred             HHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhh
Q 015145          237 IWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINEL  316 (412)
Q Consensus       237 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~  316 (412)
                                                                                                      
T Consensus       285 --------------------------------------------------------------------------------  284 (373)
T d1miqa_         285 --------------------------------------------------------------------------------  284 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceE
Q 015145          317 CDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH  396 (412)
Q Consensus       317 c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y  396 (412)
                          ....+.|..+| ....+|+|+|+|+|++|+|+|++|+.+..+.+...|++.|++.+.   ..+.||||++|||++|
T Consensus       285 ----~~~~~~~~~~~-~~~~~P~itf~f~g~~~~l~p~~y~~~~~~~~~~~C~~~~~~~~~---~~~~~ILG~~fl~~~y  356 (373)
T d1miqa_         285 ----VPFLPFYVTTC-DNKEMPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDI---DSNTFILGDPFMRKYF  356 (373)
T ss_dssp             ----CTTSSCEEEET-TCTTCCCEEEECSSCEEEECGGGSEEESSSSSCSEEEESEEECCS---SSSEEEECHHHHHHEE
T ss_pred             ----ccCCCeeEecc-ccCCCceEEEEECCEEEEECHHHeeEEEEeCCCCEEEEEEEECCC---CCCCEEEcHHhhCcEE
Confidence                01123344444 457899999999999999999999998766667799999997653   3468999999999999


Q ss_pred             EEEeCCCCeEEEEecC
Q 015145          397 TVFDSGKLRIGFAEAA  412 (412)
Q Consensus       397 vvfD~e~~rIGfa~~~  412 (412)
                      +|||++++|||||+||
T Consensus       357 ~vfD~~~~rIGfA~ak  372 (373)
T d1miqa_         357 TVFDYDKESVGFAIAK  372 (373)
T ss_dssp             EEEETTTTEEEEEEEC
T ss_pred             EEEECCCCEEEEEEcC
Confidence            9999999999999986

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=100.00  E-value=2.8e-47  Score=375.47  Aligned_cols=288  Identities=21%  Similarity=0.290  Sum_probs=249.7

Q ss_pred             cccccceeeecCccCccceEEecC-------------CCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV-------------PISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNV   67 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~-------------~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v   67 (412)
                      +|||+|.+...+||||+++||++.             ..|..++.|+|++|+|++..++++.+.|++|+ +.|.++.|++
T Consensus        20 iGtP~q~~~~i~DTGS~~~Wv~~~~~~c~~~~~~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Y~~g~~~~G~~~~D~~   99 (334)
T d1j71a_          20 VGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLNQDFSIEYGDLTSSQGSFYKDTV   99 (334)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEEEEEEEEBTTSCEEEEEEEEEEE
T ss_pred             EcCCCeEEEEEEECCCcceEEeeCCCCccccccccCCcccccCCcCCcccCCcccCCCcCEEEEeCCCceEEEEEEeeEE
Confidence            689999999999999999999865             23666788999999999999999999999865 8999999999


Q ss_pred             EECCeEEeeeEEEEEEeecCcccccCCccEEEeccCCcccc--CCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEE
Q 015145           68 EVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEI  145 (412)
Q Consensus        68 ~lg~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~--~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l  145 (412)
                      ++++..++++.||++....       ..+|++|||+...+.  ....+++.+|++||+|.+++|++|+.+..  ..+|.|
T Consensus       100 ~~g~~~~~~~~f~~~~~~~-------~~~GilGlg~~~~~~~~~~~~~~~~~l~~q~~i~~~~fs~~l~~~~--~~~g~l  170 (334)
T d1j71a_         100 GFGGISIKNQQFADVTTTS-------VDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSED--ASTGKI  170 (334)
T ss_dssp             EETTEEEEEEEEEEEEEES-------SSSCEEECSCGGGSSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTT--CSEEEE
T ss_pred             EEeeeeccCceeeeeeeec-------cccCccccccccccccccccchhhHHHHhccccccceEEEEeccCC--CCCceE
Confidence            9999999999999998764       348999999987654  23567899999999999999999998764  247999


Q ss_pred             EeCCCCCCCeecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecc
Q 015145          146 VFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE  225 (412)
Q Consensus       146 ~fGg~D~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~  225 (412)
                      +|||+|++++.|++.|+|+.+..+|.+.+++|++++..+.   .+..++||||++++++|.+++++|.+.+++...    
T Consensus       171 ~lGg~d~~~~~g~~~~~~~~~~~~~~v~l~~i~v~g~~~~---~~~~aiiDSGt~~~~lp~~~~~~l~~~~~~~~~----  243 (334)
T d1j71a_         171 IFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVS---TNADVVLDSGTTITYFSQSTADKFARIVGATWD----  243 (334)
T ss_dssp             EETEEETTSEEEEEEEEECCCSSSCEEEEEEEEETTEEEE---EEEEEEECTTCSSEEECHHHHHHHHHHHTCEEE----
T ss_pred             EecccChhhcccceeEeeeccccceEEeeceEEECCEEec---ccccccccCCCcceeccHHHHHHHHHHhCCEEc----
Confidence            9999999999999999999999999999999999999875   456799999999999999999999999976510    


Q ss_pred             hhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhh
Q 015145          226 CKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQT  305 (412)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  305 (412)
                                                                                                      
T Consensus       244 --------------------------------------------------------------------------------  243 (334)
T d1j71a_         244 --------------------------------------------------------------------------------  243 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEEC-CEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCc
Q 015145          306 KEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPL  384 (412)
Q Consensus       306 ~~~~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~g-g~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~  384 (412)
                                      ...+.|.++|..  ..|+++|+|+ |++|+|+|++|+++..  ....|++++++.       +.
T Consensus       244 ----------------~~~~~~~~~~~~--~~p~i~f~f~~g~~~~i~~~~y~~~~~--~~~~C~~~i~~~-------~~  296 (334)
T d1j71a_         244 ----------------SRNEIYRLPSCD--LSGDAVFNFDQGVKITVPLSELILKDS--DSSICYFGISRN-------DA  296 (334)
T ss_dssp             ----------------TTTTEEECSSSC--CCSEEEEEESTTCEEEEEGGGGEEECS--SSSCEEESEEEC-------TT
T ss_pred             ----------------CCCCeeeccccc--cCCCceEEeCCCEEEEEChHHeEEecC--CCCEEEEEecCC-------CC
Confidence                            123357777763  5699999995 7999999999998743  346899988753       46


Q ss_pred             EEEccccccceEEEEeCCCCeEEEEecC
Q 015145          385 WILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       385 ~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      ||||.+|||++|++||+|++|||||+++
T Consensus       297 ~ILG~~fl~~~y~vfD~~n~~iGfA~~~  324 (334)
T d1j71a_         297 NILGDNFLRRAYIVYDLDDKTISLAQVK  324 (334)
T ss_dssp             CEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             cEECHHhhCcEEEEEECCCCEEEEEECC
Confidence            8999999999999999999999999974

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plant acid proteinase, phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=1.8e-46  Score=363.86  Aligned_cols=310  Identities=62%  Similarity=1.108  Sum_probs=274.7

Q ss_pred             cccccceeeecCccCccceEEecC-----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV-----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKD   76 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~-----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~   76 (412)
                      +|||+|.+-...||||+.+||+|.     ..|..++.|+|++|+|++..++.+.+.|++|++.|.++.|++++++..+.+
T Consensus        23 iGtP~q~~~l~~DTGS~~~Wv~~~~C~~~~~~~~~~~y~p~~SsT~~~~~~~~~~~y~~gs~~G~~~~d~~~~~~~~~~~  102 (337)
T d1qdma2          23 VGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGSIAGYFSEDSVTVGDLVVKD  102 (337)
T ss_dssp             ETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGSCCBCGGGCTTCBCCCCEEEEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred             EcCCCEEEEEEEECCCcceEEecCCCCCCccccCCCCCCcccCCccccCCceEEEecCCceEEEEEEeeeEEEEeecccc
Confidence            689999999999999999999986     246778999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCee
Q 015145           77 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFK  156 (412)
Q Consensus        77 ~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~  156 (412)
                      +.|+++....+........+|++||+++.........++..+..++.+.+++|++++....+....|.|.|||+|+.++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~l~~g~~d~~~~~  182 (337)
T d1qdma2         103 QEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYV  182 (337)
T ss_dssp             EEEEEEEECCBSHHHHCSSSEEEECSCGGGCGGGCCCHHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTTSEE
T ss_pred             ceeeeeccccceeecccccccccccccCccccCCCccchhhhhhhhccCCCeEEEEeecCCCcccCcceecCCcCccccc
Confidence            99999888766555566779999999988776677778999999999999999999998876667899999999999999


Q ss_pred             cCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhh
Q 015145          157 GKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDL  236 (412)
Q Consensus       157 g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  236 (412)
                      +++.++|+....+|.+.+.++.+++....+...+..+++|||++++++|.++++++.+++.+..                
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~iiDtgt~~~~l~~~~~~~~~~~l~~~~----------------  246 (337)
T d1qdma2         183 GEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAG----------------  246 (337)
T ss_dssp             EEEEEEEEEEETTEEEEECCEEETTEECSTTTTCEEEEECSSCCSEEECHHHHHHHHHHHTCCC----------------
T ss_pred             cceeeeeeccccceeeccceEEECCeEeeecCCCceEEeeccCcceecchHHHHHHHHHhcccc----------------
Confidence            9999999999999999999999999988777778899999999999999999999999997651                


Q ss_pred             HHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhh
Q 015145          237 IWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINEL  316 (412)
Q Consensus       237 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~  316 (412)
                                                                                                      
T Consensus       247 --------------------------------------------------------------------------------  246 (337)
T d1qdma2         247 --------------------------------------------------------------------------------  246 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceE
Q 015145          317 CDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH  396 (412)
Q Consensus       317 c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y  396 (412)
                           .....+.++|...+..|+++|+|+|++|.|+|++|+.+..++...+|++.|+..+.+....+.||||.+|||++|
T Consensus       247 -----~~~~~~~~~~~~~~~~p~itf~f~g~~~~l~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~IlG~~fl~~~y  321 (337)
T d1qdma2         247 -----SPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYH  321 (337)
T ss_dssp             -----CSSSCCEECGGGGTTCCCEEEEETTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEE
T ss_pred             -----ccCCcccccccccCCCCceEEEECCEEEEEChHHeEEEeccCCCCEEEEEEEecCcCCCCCCcEEEhHHhhcCEE
Confidence                 112235678887788999999999999999999999988777778999999988766666788999999999999


Q ss_pred             EEEeCCCCeEEEEecC
Q 015145          397 TVFDSGKLRIGFAEAA  412 (412)
Q Consensus       397 vvfD~e~~rIGfa~~~  412 (412)
                      +|||++++||||||||
T Consensus       322 ~vfD~~~~~igfA~aa  337 (337)
T d1qdma2         322 TVFDYGKLRIGFAKAA  337 (337)
T ss_dssp             EEEETTTTEEEEEEEC
T ss_pred             EEEECCCCEEEEEECC
Confidence            9999999999999997

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=100.00  E-value=5.6e-46  Score=365.21  Aligned_cols=293  Identities=22%  Similarity=0.337  Sum_probs=247.7

Q ss_pred             cccccceeeecCccCccceEEecC-------------CCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV-------------PISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNV   67 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~-------------~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v   67 (412)
                      +|||+|.+...+||||+++|||+.             ..|..+..|+|++|+|++..++++++.|++|+ +.|.++.|++
T Consensus        20 iGtP~Q~~~~i~DTGS~~~Wv~~~~~~c~~~~~~~~~~~~~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~~G~~~~d~~   99 (342)
T d1eaga_          20 VGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYGDGSSSQGTLYKDTV   99 (342)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred             ECCCCeEEEEEEECCCcceEEeecCCCccccccccCccccccCCcCCCccCcceeECCeeEEEEeCCCceEEEEEEeeEE
Confidence            689999999999999999999875             12456678999999999999999999999998 6899999999


Q ss_pred             EECCeEEeeeEEEEEEeecCcccccCCccEEEeccCCccccC-CCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEE
Q 015145           68 EVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVG-DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIV  146 (412)
Q Consensus        68 ~lg~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~-~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~  146 (412)
                      ++++.++.++.|+++....       ..+|++|||+...+.. ...+++.+|++|+.|.+++|++|+.+.+.  ..|.|+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~-------~~~g~~Glg~~~~~~~~~~~~~~~~L~~q~~i~~~~fs~~l~~~~~--~~G~l~  170 (342)
T d1eaga_         100 GFGGVSIKNQVLADVDSTS-------IDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDA--ATGQII  170 (342)
T ss_dssp             EETTEEEEEEEEEEEEEES-------SSSCEEECSCGGGCSSCSCCCHHHHHHHTTSSSSSEEEEECCCTTC--SEEEEE
T ss_pred             EeceEeeeeeEEEeeceee-------cccccccccccccccCCccCccceehhhcCCccceEEEEEcCCCCC--CCceEE
Confidence            9999999999999998653       3489999999876543 35679999999999999999999987542  379999


Q ss_pred             eCCCCCCCeecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecch
Q 015145          147 FGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAEC  226 (412)
Q Consensus       147 fGg~D~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~  226 (412)
                      |||+|+.++.|++.|+|+.+..+|.+.+++|.++++.+.  ..+..++||||++++++|.++++++.+++++...     
T Consensus       171 ~Gg~d~~~~~g~~~~~p~~~~~~w~v~l~~i~vgg~~~~--~~~~~~iiDSGts~~~lp~~~~~~l~~~l~~~~~-----  243 (342)
T d1eaga_         171 FGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTIN--TDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLT-----  243 (342)
T ss_dssp             ETEEETTSEEEEEEEEECCCSSSCEEEEEEEEETTEEEE--EEEEEEEECTTCSSEEECHHHHHHHHHHTTCEEE-----
T ss_pred             EcccCchhccceEEEEecccccceEEEEeeEEECCEEec--ccccccccccCCccccCCHHHHHHHHHHhCcccc-----
Confidence            999999999999999999999999999999999999875  4566899999999999999999999999976510     


Q ss_pred             hhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhH
Q 015145          227 KLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTK  306 (412)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  306 (412)
                                                                                                      
T Consensus       244 --------------------------------------------------------------------------------  243 (342)
T d1eaga_         244 --------------------------------------------------------------------------------  243 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEEC-CEEEEeCcccceEEecccc---ccceeeeeeeccCCCCCC
Q 015145          307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGI---AEVCISGFMAFDLPPPRG  382 (412)
Q Consensus       307 ~~~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~g-g~~~~i~p~~yl~~~~~~~---~~~C~~~i~~~~~~~~~~  382 (412)
                                  ...+....|.++|+   ..|+|+|+|+ +..+.|+|++|+++.....   ...|...+..       .
T Consensus       244 ------------~~~~~~~~~~~~c~---~~p~i~f~f~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~-------~  301 (342)
T d1eaga_         244 ------------QDSNGNSFYEVDCN---LSGDVVFNFSKNAKISVPASEFAASLQGDDGQPYDKCQLLFDV-------N  301 (342)
T ss_dssp             ------------ECTTSCEEEEEESC---CCSEEEEECSTTCEEEEEGGGGEEEC---CCSCTTEEEECEEE-------C
T ss_pred             ------------ccCCCCceeccccc---cCCCEEEEECCCEEEEEChHHeEEEecCCCCceeeEEEEccCC-------C
Confidence                        00122346889998   5699999996 7999999999999764321   2245554442       3


Q ss_pred             CcEEEccccccceEEEEeCCCCeEEEEecC
Q 015145          383 PLWILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       383 ~~~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      +.+|||.+|||++|+|||++++||||||++
T Consensus       302 ~~~ILG~~fl~~~y~vfD~~~~~iGfA~a~  331 (342)
T d1eaga_         302 DANILGDNFLRSAYIVYDLDDNEISLAQVK  331 (342)
T ss_dssp             TTCEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             CCcEECHHhhCcEEEEEECCCCEEEEEECC
Confidence            568999999999999999999999999985

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin
species: Mucor pusillus [TaxId: 4840]

Probab=100.00  E-value=1e-45  Score=365.44  Aligned_cols=302  Identities=23%  Similarity=0.365  Sum_probs=254.6

Q ss_pred             cccccceeeecCccCccceEEecC-----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV-----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKD   76 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~-----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~   76 (412)
                      +|||+|++-..+||||+.+|||+.     ..|..|+.|+|++|+|++..++.+.+.|++|++.|.+++|++++++..+.+
T Consensus        22 iGtP~Q~~~~ivDTGSs~~wv~~~~C~~~~~c~~~~~f~~~~SsT~~~~~~~~~~~y~~g~~~G~~~~d~v~~~~~~~~~  101 (357)
T d1mppa_          22 IGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGTGGANGIYFRDSITVGGATVKQ  101 (357)
T ss_dssp             ETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEEETTEEEEE
T ss_pred             EcCCCeEEEEEEeCCCcceEEccCCCCCCccccCCCCCCCccCCccccCCcceEEecCCCcEEEEEEeeecccccceECc
Confidence            689999999999999999999986     358899999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeecCccc-----ccCCccEEEeccCCcccc------CCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEE
Q 015145           77 QVFIEATREGSLTF-----LLARFDGIIGLGFREIAV------GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEI  145 (412)
Q Consensus        77 ~~fg~~~~~~~~~~-----~~~~~dGilGLg~~~~s~------~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l  145 (412)
                      +.|+++........     .....+|++|||+...+.      ....+++.+|++||+|++++||+||++..+   .|.|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~Gi~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~---~G~l  178 (357)
T d1mppa_         102 QTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDG---GGQV  178 (357)
T ss_dssp             EEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCSSS---EEEE
T ss_pred             EEEEEEEeecccceecccccccccccccccccCCccccccccCCCCCCHHHHHHhccccccceEEEEeccCCC---CceE
Confidence            99999987644322     234568999999976432      245789999999999999999999977542   7999


Q ss_pred             EeCCCCCCCeecCceEeecccc----ceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCce
Q 015145          146 VFGGVDPKHFKGKHTYVPVTKK----GYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGV  221 (412)
Q Consensus       146 ~fGg~D~~~~~g~l~~~p~~~~----~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~  221 (412)
                      +|||+|++++.+++.|+|+.+.    .+|.|.++++.+++...........++||||+++++||.++++++.+++.+...
T Consensus       179 ~~Gg~d~~~~~~~~~~~pi~~~~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~ilDSGts~~~lp~~~~~~i~~~~~~~~~  258 (357)
T d1mppa_         179 VFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAFTIDTGTNFFIAPSSFAEKVVKAALPDAT  258 (357)
T ss_dssp             EESSCCGGGBSSCCEEEECEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTCCSEEEEHHHHHHHHHHHCTTCE
T ss_pred             ECcccChhHcCCceeEEEeccCCCCceeEEEEEeeEEECCeEeeecCCCcceEeeccCccccCCHHHHHHHHHHhcCCcc
Confidence            9999999999999999999643    479999999999998775444567789999999999999999999999966521


Q ss_pred             eecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhh
Q 015145          222 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLK  301 (412)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (412)
                                                                                                      
T Consensus       259 --------------------------------------------------------------------------------  258 (357)
T d1mppa_         259 --------------------------------------------------------------------------------  258 (357)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhHHHHHHHhhhhccCCCCCCCceeeeCCCC-CCCCcEEEEEC-------CEEEEeCcccceEEeccccccceeeeee
Q 015145          302 QKQTKEKVLSYINELCDSLPNPMGESIIDCDRI-PTMPNVSFTIG-------DKIFNLSPEQYILKTGEGIAEVCISGFM  373 (412)
Q Consensus       302 ~~~t~~~~~~~~~~~c~~~~~~~~~~~ipC~~~-~~lp~l~f~~g-------g~~~~i~p~~yl~~~~~~~~~~C~~~i~  373 (412)
                                          ...+.|.+||+.. +..|.++|.|+       +.++.|||++|+.+... ....|++.+.
T Consensus       259 --------------------~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~c~~~~~  317 (357)
T d1mppa_         259 --------------------ESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDK-SGETCMFIVL  317 (357)
T ss_dssp             --------------------EETTEEEEEHHHHTTCCCEEEEEEECTTCSSCEEEEEEEGGGGEEECSS-SSCEEEESEE
T ss_pred             --------------------ccCCceecccccccccCceEEEEEeccccccccEEEEEchHHeEEEecC-CCCEEEEEEc
Confidence                                1234678888642 35677777774       36899999999987643 4568998887


Q ss_pred             eccCCCCCCCcEEEccccccceEEEEeCCCCeEEEEecC
Q 015145          374 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       374 ~~~~~~~~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      ..     ..+.||||.+|||++|+|||++++||||||+|
T Consensus       318 ~~-----~~~~~ILG~~fl~~~yvvfD~~~~~iGfA~~~  351 (357)
T d1mppa_         318 PD-----GGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLA  351 (357)
T ss_dssp             EE-----SSSCCEEEHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             CC-----CCCCEEechHHhCCEEEEEECCCCEEEEEECC
Confidence            53     23678999999999999999999999999997

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

Probab=100.00  E-value=7.4e-45  Score=353.68  Aligned_cols=292  Identities=26%  Similarity=0.355  Sum_probs=243.2

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECCeEEee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGDVVVKD   76 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~~~~~   76 (412)
                      +|+  |.+-...||||+++||||+    +.|..|..|+++ |||+...+++++++|++|+ +.|.+++|++++++..+++
T Consensus        23 iG~--q~~~l~~DTGSs~~Wv~~~~C~~~~~~~~~~~~~~-sSt~~~~~~~~~i~Y~~G~~~~G~~~~d~~~~~~~~~~~   99 (323)
T d1izea_          23 VGD--DTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPG-SSAQKIDGATWSISYGDGSSASGDVYKDKVTVGGVSYDS   99 (323)
T ss_dssp             ETT--EEEEEEEETTCCCCEECBTTSCHHHHTTSCCBCCC-TTCEEEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEE
T ss_pred             ECC--eeEEEEEECCCcceEEEcCCCCChhhcCCCccCcc-ccccccCCCEEEEEcCCcceeeeEEEeeeeeccCccccc
Confidence            454  4556678999999999987    357778888775 6677888999999999997 7999999999999999999


Q ss_pred             eEEEEEEeecCcccccCCccEEEeccCCccccCC---CCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCC
Q 015145           77 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGD---AVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK  153 (412)
Q Consensus        77 ~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~---~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~  153 (412)
                      +.|+++.......+....++|++|||+...+...   ...+..++  ++.+.+++|++++.+..    .|.|+|||+|++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~~--~~~~~~~~fs~~l~~~~----~g~l~~Gg~d~~  173 (323)
T d1izea_         100 QAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNV--KSSLSEPIFAVALKHNA----PGVYDFGYTDSS  173 (323)
T ss_dssp             EEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHH--GGGSSSSEEEEECCTTS----CEEEEESSCCTT
T ss_pred             eEEEEEEeccCccccccccccccccccccccccCcccchHHHHhh--hhhcCcceEEEEccCCC----CeeEEccccCcc
Confidence            9999999876666667788999999998766432   22244444  34588999999998764    799999999999


Q ss_pred             CeecCceEeecc-ccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhh
Q 015145          154 HFKGKHTYVPVT-KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQ  232 (412)
Q Consensus       154 ~~~g~l~~~p~~-~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~  232 (412)
                      ++.|++.|+|+. ...+|.+.++++.++++...   ....++||||++++++|.++++++.+.+++...           
T Consensus       174 ~~~g~~~~~~~~~~~~~~~v~~~~i~v~~~~~~---~~~~~ivDSGts~~~lp~~~~~~~~~~~~~~~~-----------  239 (323)
T d1izea_         174 KYTGSITYTDVDNSQGFWGFTADGYSIGSDSSS---DSITGIADTGTTLLLLDDSIVDAYYEQVNGASY-----------  239 (323)
T ss_dssp             SEEEEEEEEECBCTTSSCEEEESEEEETTEEEC---CCEEEEECTTCCSEEECHHHHHHHHTTSTTCEE-----------
T ss_pred             cccCcceeeeecCCCceEEEEeceEEECCCccc---cCceEEeccCCccccCCHHHHHHHHHHcCCccc-----------
Confidence            999999999996 46789999999999998864   567899999999999999999999998865410           


Q ss_pred             chhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHH
Q 015145          233 YGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSY  312 (412)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~  312 (412)
                                                                                                      
T Consensus       240 --------------------------------------------------------------------------------  239 (323)
T d1izea_         240 --------------------------------------------------------------------------------  239 (323)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccc
Q 015145          313 INELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFM  392 (412)
Q Consensus       313 ~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl  392 (412)
                              ....+.+.++|.  .++|+++|+|+|.++.||+++|+.+..  +.+.|++.|...    ...+.+|||.+||
T Consensus       240 --------~~~~~~~~~~~~--~~~p~i~f~f~g~~~~ip~~~~~~~~~--~~~~C~~~i~~~----~~~~~~iLG~~fl  303 (323)
T d1izea_         240 --------DSSQGGYVFPSS--ASLPDFSVTIGDYTATVPGEYISFADV--GNGQTFGGIQSN----SGIGFSIFGDVFL  303 (323)
T ss_dssp             --------ETTTTEEEEETT--CCCCCEEEEETTEEEEECHHHHEEEEC--STTEEEESEEEC----TTTSSEEECHHHH
T ss_pred             --------cCCCCcEEeecc--cCCceEEEEECCEEEEcChHHEEEEeC--CCCEEEEEEECC----CCCCCEEECHHHh
Confidence                    123456777887  478999999999999999999987643  346899998753    3446799999999


Q ss_pred             cceEEEEeCCCCeEEEEecC
Q 015145          393 GVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       393 ~~~yvvfD~e~~rIGfa~~~  412 (412)
                      |++|+|||+|++|||||++|
T Consensus       304 r~~y~vfD~~~~~IGfA~~a  323 (323)
T d1izea_         304 KSQYVVFDASGPRLGFAAQA  323 (323)
T ss_dssp             TTEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEECCCCEEEEccCC
Confidence            99999999999999999987

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]

Probab=100.00  E-value=3.3e-45  Score=355.22  Aligned_cols=300  Identities=26%  Similarity=0.440  Sum_probs=258.7

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+-+..||||+.+||+|.    +.|..++.|+|++|+|++..++++.+.|++|++.|.++.|++++++..+.++
T Consensus        22 iGtP~q~~~~~~DTGS~~~Wv~~~~C~~~~~~~~~~y~~~~SsT~~~~~~~~~~~Y~~g~~~G~~~~d~~~~~~~~~~~~  101 (329)
T d2bjua1          22 VGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK  101 (329)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEEEEEEEEECSSSEEEEEEEEEEEEETTEEEEEE
T ss_pred             ECCCCEEEEEEEECCCcceEEECCCCCCccccCCCCCCcccCCCccCCCccEEEEcCCCcEEEEEEEeeeeeeeeeeccc
Confidence            689999999999999999999986    5677889999999999999999999999999999999999999999999988


Q ss_pred             EEEEEEeecCc-ccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCee
Q 015145           78 VFIEATREGSL-TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFK  156 (412)
Q Consensus        78 ~fg~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~  156 (412)
                      .++++...... .+.....+|++|+++..........++..+..++.+.+++|++|+.+..  ...|.|+|||+|+.++.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~l~~~~--~~~g~l~~gg~d~~~~~  179 (329)
T d2bjua1         102 FIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHD--KHTGFLTIGGIEERFYE  179 (329)
T ss_dssp             EEEEEECGGGTTHHHHSSCCEEEECSCGGGSTTCCCCHHHHHHHTTSSSSCEEEEECCBTT--TBCEEEEESSCCGGGEE
T ss_pred             eEEEEEeeccCccccccccCccccccccccccCCccccchhhhhhhccccceeeEEecCCc--CCcceeeecCCCccccc
Confidence            88888765322 2335678999999998777777888999999999999999999998764  34799999999999999


Q ss_pred             cCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhh
Q 015145          157 GKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDL  236 (412)
Q Consensus       157 g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  236 (412)
                      |++.|+|+.+..+|.+.++.+.++...     ....++||||++++++|.++++++.+++++..                
T Consensus       180 g~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~iDSGt~~~~lp~~~~~~l~~~~~~~~----------------  238 (329)
T d2bjua1         180 GPLTYEKLNHDLYWQITLDAHVGNIML-----EKANCIVDSGTSAITVPTDFLNKMLQNLDVIK----------------  238 (329)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEETTEEE-----EEEEEEECTTCCSEEECHHHHHHHTTTSSCEE----------------
T ss_pred             CceEEEeeeeeeeEEEEEeeeEeeeEc-----cCCcccccccccceeCCHHHHHHHHHHhCCee----------------
Confidence            999999999999999999877654332     34569999999999999999999999886551                


Q ss_pred             HHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhh
Q 015145          237 IWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINEL  316 (412)
Q Consensus       237 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~  316 (412)
                                                                                                      
T Consensus       239 --------------------------------------------------------------------------------  238 (329)
T d2bjua1         239 --------------------------------------------------------------------------------  238 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceE
Q 015145          317 CDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH  396 (412)
Q Consensus       317 c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y  396 (412)
                          ....+.|..+|+ .+.+|.++|.|+|.+++|+|++|+.+..+...+.|++.|+..+.   ..+.||||.+|||++|
T Consensus       239 ----~~~~~~~~~~~~-~~~~p~~~f~~~g~~~~i~p~~y~~~~~~~~~~~C~~~i~~~~~---~~~~~IlG~~fl~~~y  310 (329)
T d2bjua1         239 ----VPFLPFYVTLCN-NSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDF---PVPTFILGDPFMRKYF  310 (329)
T ss_dssp             ----CTTSSCEEEETT-CTTCCCEEEECSSCEEEECHHHHEEECTTTSTTEEEECEEECCC---SSCEEEECHHHHHHEE
T ss_pred             ----cCCCCeeEeecc-cCCCCceeEEeCCEEEEECHHHhEEEeecCCCCEEEEEEEECCC---CCCCEEEchHhhCcEE
Confidence                012334556665 46789999999999999999999998877777899999997642   3468999999999999


Q ss_pred             EEEeCCCCeEEEEecC
Q 015145          397 TVFDSGKLRIGFAEAA  412 (412)
Q Consensus       397 vvfD~e~~rIGfa~~~  412 (412)
                      +|||+|++|||||||+
T Consensus       311 ~vfD~~~~~iGfA~a~  326 (329)
T d2bjua1         311 TVFDYDNHSVGIALAK  326 (329)
T ss_dssp             EEEETTTTEEEEEEEC
T ss_pred             EEEECCCCEEEEEEec
Confidence            9999999999999986

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

Probab=100.00  E-value=3.6e-44  Score=348.37  Aligned_cols=293  Identities=24%  Similarity=0.353  Sum_probs=243.3

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECCeEEee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGDVVVKD   76 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~~~~~   76 (412)
                      +||++++  +..||||+++||+|.    +.|..+..|+|++|+|+.. ++++.+.|++|+ +.|.++.|++++++..+.+
T Consensus        23 vG~~~~~--v~~DTGSs~~Wv~~~~C~~c~~~~~~~y~~s~Sst~~~-~~~~~~~Y~~G~~~~G~~~~D~~~~~~~~~~~   99 (323)
T d1bxoa_          23 IGGTTLN--LNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELS-GYTWSISYGDGSSASGNVFTDSVTVGGVTAHG   99 (323)
T ss_dssp             ETTEEEE--EEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHCEEEE-EEEEEEECTTSCEEEEEEEEEEEEETTEEEEE
T ss_pred             ECCccEE--EEEECCCcceEEECCCCCchhhcCCCCCCCcccccccC-CCEEEEEeCCCCcEEEEEEEEeeeccCccccc
Confidence            4665544  357999999999997    3578889999999988765 678999999998 8999999999999999999


Q ss_pred             eEEEEEEeecCcccccCCccEEEeccCCccccC--CCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCC
Q 015145           77 QVFIEATREGSLTFLLARFDGIIGLGFREIAVG--DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKH  154 (412)
Q Consensus        77 ~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~--~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~  154 (412)
                      +.|+++.......+.....+||+|||++..+..  ...+.+.++.+.. +..+.|++++....    .|.|+|||+|+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~GilGlg~~~~s~~~~~~~~~~~~~~~~~-~~~~~fs~~~~~~~----~g~l~~Gg~d~~~  174 (323)
T d1bxoa_         100 QAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSS-LAQPLFAVALKHQQ----PGVYDFGFIDSSK  174 (323)
T ss_dssp             EEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCCCHHHHHGGG-BSSSEEEEECCSSS----CEEEEESSCCGGG
T ss_pred             ceeeeeeeeecccccccccccccccccCcccccCCCcCchHHHHHhhh-cccceeeeccccCC----Cceeeeecccccc
Confidence            999999887655555667899999999876542  2344444444433 77899999987764    7999999999999


Q ss_pred             eecCceEeeccc-cceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhc
Q 015145          155 FKGKHTYVPVTK-KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQY  233 (412)
Q Consensus       155 ~~g~l~~~p~~~-~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~  233 (412)
                      +.|+++|+|+.+ ..+|.+.++++.++++...    ...++|||||+++++|.+++++|.+++++...            
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~----~~~aiiDSGTs~~~lp~~~~~~l~~~i~~~~~------------  238 (323)
T d1bxoa_         175 YTGSLTYTGVDNSQGFWSFNVDSYTAGSQSGD----GFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQ------------  238 (323)
T ss_dssp             BSSCCEEEECBCTTSSCEEEEEEEEETTEEEE----EEEEEECTTCSSEEECHHHHHHHHTTSTTCEE------------
T ss_pred             ccCceeeeeccCcccceeEeeeeEEECCEecC----CcceEEecccccccCCHHHHHHHHHHhCCccc------------
Confidence            999999999965 5789999999999988753    46799999999999999999999998865410            


Q ss_pred             hhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHh
Q 015145          234 GDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYI  313 (412)
Q Consensus       234 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~  313 (412)
                                                                                                      
T Consensus       239 --------------------------------------------------------------------------------  238 (323)
T d1bxoa_         239 --------------------------------------------------------------------------------  238 (323)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEcccccc
Q 015145          314 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMG  393 (412)
Q Consensus       314 ~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~  393 (412)
                             ....+.|.++|+.  .+|+|+|+|+|++|.|+|++|++.... +..+|++.|...    ...+.+|||++|||
T Consensus       239 -------~~~~~~~~~~c~~--~~p~itf~f~g~~~~i~~~~~~~~~~~-~~~~C~~~i~~~----~~~~~~ILG~~flr  304 (323)
T d1bxoa_         239 -------DSNAGGYVFDCST--NLPDFSVSISGYTATVPGSLINYGPSG-DGSTCLGGIQSN----SGIGFSIFGDIFLK  304 (323)
T ss_dssp             -------ETTTTEEEECTTC--CCCCEEEEETTEEEEECHHHHEEEECS-SSSCEEESEEEC----TTCSSEEECHHHHT
T ss_pred             -------cCCCCcEEEeccC--CCCcEEEEECCEEEEEChHHeEEEEcC-CCCEEEEEEECC----CCCCcEEECHHHhC
Confidence                   1334678899984  799999999999999999999876543 457899988864    23456899999999


Q ss_pred             ceEEEEeCCCCeEEEEecC
Q 015145          394 VYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       394 ~~yvvfD~e~~rIGfa~~~  412 (412)
                      ++|+|||+|++|||||++|
T Consensus       305 ~~y~vfD~~~~~IGfAp~~  323 (323)
T d1bxoa_         305 SQYVVFDSDGPQLGFAPQA  323 (323)
T ss_dssp             TEEEEEETTTTEEEEEEBC
T ss_pred             CEEEEEECCCCEEeEEeCC
Confidence            9999999999999999987

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]

Probab=100.00  E-value=1.1e-43  Score=348.75  Aligned_cols=296  Identities=23%  Similarity=0.346  Sum_probs=241.4

Q ss_pred             cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeeeEEEE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIE   81 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~~fg~   81 (412)
                      +|||+|++....||||+++||||.. |     |  ..|+|++..++++++.|++|++.|.+++|++++++..+.++.||+
T Consensus        20 iGtP~Q~~~~i~DTGSs~~wv~~~~-c-----~--~~sst~~~~~~~~~i~Y~~gs~~G~~~~D~~~~~~~~~~~~~fg~   91 (340)
T d1wkra_          20 VGSPATTYSLLVDTGSSNTWLGADK-S-----Y--VKTSTSSATSDKVSVTYGSGSFSGTEYTDTVTLGSLTIPKQSIGV   91 (340)
T ss_dssp             ETTTTEEEEEEEETTCCCCEECSSS-C-----C--CCCTTCEEEEEEEEEECSSCEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EcCCCeEEEEEEECCCcceEEcCCC-C-----C--CCCCCcCCCCCeEEEEeCCeEEEEEEEEEEEeeCCeeeccEEEEE
Confidence            6899999999999999999999853 3     2  347777788899999999999999999999999999999999999


Q ss_pred             EEeecCcccccCCccEEEeccCCcccc--------CCCCchHHHHHHcCCCCCCeEEEEecCCCCC-CCCcEEEeCCCCC
Q 015145           82 ATREGSLTFLLARFDGIIGLGFREIAV--------GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDA-EEGGEIVFGGVDP  152 (412)
Q Consensus        82 ~~~~~~~~~~~~~~dGilGLg~~~~s~--------~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~-~~~G~l~fGg~D~  152 (412)
                      ++...+    ....+|++|+|+.....        ....+++.+|++|+.+.+++|++|+.+..+. ..+|.|+|||+|+
T Consensus        92 ~~~~~~----~~~~~gi~g~g~~~~~~~~~~~~~~~~~~~~~~~l~~q~~i~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~  167 (340)
T d1wkra_          92 ASRDSG----FDGVDGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDS  167 (340)
T ss_dssp             EEEEES----CTTCSEEEECSCGGGGTTSEESCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCG
T ss_pred             EEeccC----cccccceecccccccccccccCccccCcCchhhhHHhhhccchhheeeeecccCCCCCCCceEEccccCh
Confidence            998743    23568999999875432        2356789999999999999999999876432 2468999999999


Q ss_pred             CCeecCceEeeccc----cceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhh
Q 015145          153 KHFKGKHTYVPVTK----KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKL  228 (412)
Q Consensus       153 ~~~~g~l~~~p~~~----~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~  228 (412)
                      +++.|++.|+|+..    ..||.+.++.+.+++..+.   .+..++|||||++++||.+++++|.+.+++..        
T Consensus       168 ~~~~g~i~~~pv~~~~~~~~y~~i~~~~~~~~~~~~~---~~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~--------  236 (340)
T d1wkra_         168 SKYTGSITYTPITSTSPASAYWGINQSIRYGSSTSIL---SSTAGIVDTGTTLTLIASDAFAKYKKATGAVA--------  236 (340)
T ss_dssp             GGCSSCCEEEECCSSTTGGGSSEEEEEEEETTTEEEE---EEEEEEECTTBCSEEECHHHHHHHHHHHTCEE--------
T ss_pred             hhcccceEEEEeecCCCCcceeEEEEEEEECCceEec---cCcceEEecCCccEeccHHHHHHHHHHhCccc--------
Confidence            99999999999964    4689999976666666553   45679999999999999999999999997551        


Q ss_pred             hhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHH
Q 015145          229 VVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEK  308 (412)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  308 (412)
                                                                                                      
T Consensus       237 --------------------------------------------------------------------------------  236 (340)
T d1wkra_         237 --------------------------------------------------------------------------------  236 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccc----ccccee-eeeeeccCCCCCCC
Q 015145          309 VLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEG----IAEVCI-SGFMAFDLPPPRGP  383 (412)
Q Consensus       309 ~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~----~~~~C~-~~i~~~~~~~~~~~  383 (412)
                                  ....+.|.++|+..+.+|+|+|+|+|++++|+|++|+.+....    ....|. ..+...........
T Consensus       237 ------------~~~~~~~~~~c~~~~~~P~i~f~f~g~~~~i~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (340)
T d1wkra_         237 ------------DNNTGLLRLTTAQYANLQSLFFTIGGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGL  304 (340)
T ss_dssp             ------------CTTTSSEEECHHHHHTCCCEEEEETTEEEEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSC
T ss_pred             ------------cCCceEEEEeccccCCCCceEEEECCEEEEEChHHeEeeccCceeecCccceEEEEEecccCCCCCCC
Confidence                        1335678999987788999999999999999999999765421    112222 22222222234456


Q ss_pred             cEEEccccccceEEEEeCCCCeEEEEecC
Q 015145          384 LWILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       384 ~~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      .||||.+|||++|+|||++++||||||++
T Consensus       305 ~~ILG~~fl~~~yvvfD~~~~~iGfA~~~  333 (340)
T d1wkra_         305 DFINGLTFLERFYSVYDTTNKRLGLATTS  333 (340)
T ss_dssp             CEEECHHHHTSEEEEEETTTTEEEEEECT
T ss_pred             CEEechHHhCCEEEEEECCCCEEEEEECC
Confidence            89999999999999999999999999985

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.9e-43  Score=339.20  Aligned_cols=298  Identities=35%  Similarity=0.642  Sum_probs=262.7

Q ss_pred             cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145            2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ   77 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~   77 (412)
                      +|||+|.+-..+||||+.+||+|.    +.|..++.|+|++|+|++..++.+++.|++|+++|.++.|++++++..+...
T Consensus        22 vGtP~q~~~~~~DTGSs~~Wv~~~~C~~~~~~~~~~y~~~~Sst~~~~~~~~~~~y~~gs~~G~~~~d~v~~~~~~~~~~  101 (323)
T d3cmsa_          22 LGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQ  101 (323)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred             ECCCCEEEEEEEECCCCceEEecCCCCCcccCCCCCCCccccCccccCCCcEEEEcCCceEEEEEEEEEEEEeccccccc
Confidence            689999999999999999999987    2356789999999999999999999999999999999999999999999888


Q ss_pred             EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145           78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG  157 (412)
Q Consensus        78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g  157 (412)
                      .|+++.......+......+++|+++...+.....+++.+|+++++|.+++||+++.+...   .|.+.+||+|..++.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~---~~~~~~g~~d~~~~~~  178 (323)
T d3cmsa_         102 TVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQ---ESMLTLGAIDPSYYTG  178 (323)
T ss_dssp             EEEEEEECCSHHHHHSSCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCTTSS---CEEEEESCCCGGGEEE
T ss_pred             eEEEEEeecccccccccccccccccccccccCCCcchhhhHhhcCCCcccceeEEeccCCC---CCceeccccCcccccC
Confidence            8988888766555566678899999988777778889999999999999999999988653   7999999999999999


Q ss_pred             CceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhH
Q 015145          158 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLI  237 (412)
Q Consensus       158 ~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  237 (412)
                      ++.|+|..+..+|.+.+.++.+++.... ......++||||+++++||.++++++.+.+++..                 
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiDSGtt~~~lp~~~~~~l~~~~~~~~-----------------  240 (323)
T d3cmsa_         179 SLHWVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQ-----------------  240 (323)
T ss_dssp             EEEEEECSSBTTBEEEEEEEEETTEEEE-STTCEEEEECTTCCSEEECHHHHHHHHHHHTCEE-----------------
T ss_pred             ceEEeeccccceeEEEEeeEeeCCeeee-cCCCeeEEEecCcceEEecHHHHHHHHHHhCcee-----------------
Confidence            9999999999999999999999988774 3457789999999999999999999999997651                 


Q ss_pred             HHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhc
Q 015145          238 WDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELC  317 (412)
Q Consensus       238 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c  317 (412)
                                                                                                      
T Consensus       241 --------------------------------------------------------------------------------  240 (323)
T d3cmsa_         241 --------------------------------------------------------------------------------  240 (323)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEE
Q 015145          318 DSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHT  397 (412)
Q Consensus       318 ~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yv  397 (412)
                          ...+.+..+|+....+|+|+|+|+|++++|+|++|+.+.    ...|++.|+..+    ..+.+|||.+|||++|+
T Consensus       241 ----~~~~~~~~~~~~~~~~p~i~f~f~g~~~~l~~~~y~~~~----~~~c~~~i~~~~----~~~~~iLG~~~l~~~yv  308 (323)
T d3cmsa_         241 ----NQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQD----QGFCTSGFQSEN----HSQKWILGDVFIREYYS  308 (323)
T ss_dssp             ----ETTTEEEECTTCTTTSCCEEEEETTEEEEECHHHHEEEE----TTEEEESEEEC-------CCEEECHHHHTTEEE
T ss_pred             ----ccCCceeEeccccCCCCeEEEEECCEEEEECHHHeEEcC----CCEEEEEEEeCC----CCCCEEEcHHhhCcEEE
Confidence                123567788988889999999999999999999999763    358999998653    34679999999999999


Q ss_pred             EEeCCCCeEEEEecC
Q 015145          398 VFDSGKLRIGFAEAA  412 (412)
Q Consensus       398 vfD~e~~rIGfa~~~  412 (412)
                      +||+|++|||||||.
T Consensus       309 vfD~~~~~igfa~a~  323 (323)
T d3cmsa_         309 VFDRANNLVGLAKAI  323 (323)
T ss_dssp             EEETTTTEEEEEEEC
T ss_pred             EEECCCCEEEEEEeC
Confidence            999999999999984

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: beta-secretase (memapsin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-43  Score=350.42  Aligned_cols=311  Identities=23%  Similarity=0.303  Sum_probs=244.9

Q ss_pred             cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECC--eEEeeeEE
Q 015145            2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGD--VVVKDQVF   79 (412)
Q Consensus         2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~--~~~~~~~f   79 (412)
                      +|||+|.+-...||||+++||+|+..|..|+.|+|++|+|++..++.+.+.|++|++.|.+++|++++++  ....+..|
T Consensus        22 IGtP~Q~~~li~DTGSs~lWv~~~~c~~~~~~f~~~~SsT~~~~~~~~~i~Y~~g~~~G~~~~D~v~i~~~~~~~~~~~~  101 (387)
T d2qp8a1          22 VGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANI  101 (387)
T ss_dssp             ETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEECTTSCSCEEEEEE
T ss_pred             ECCCCEEEEEEEECCccceEEccCCCCcCCCccCcccCCCcEeCCCcEEEEeCCccEEEEEEEEEEEEcCCCceeEeEEE
Confidence            6899999999999999999999998888899999999999999999999999999999999999999985  22233555


Q ss_pred             EEEEeecCcccccCCccEEEeccCCcccc--CCCCchHHHHHHcCCCCCCeEEEEecCCCC--------CCCCcEEEeCC
Q 015145           80 IEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDPD--------AEEGGEIVFGG  149 (412)
Q Consensus        80 g~~~~~~~~~~~~~~~dGilGLg~~~~s~--~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~--------~~~~G~l~fGg  149 (412)
                      ++........+....++||||||+...+.  ....++++.|.+++.+ +++||+|+.+..-        ...+|.|+|||
T Consensus       102 ~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~~~~~~-~~~fs~~l~~~~~~~~~~~~~~~~~G~l~~Gg  180 (387)
T d2qp8a1         102 AAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV-PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGG  180 (387)
T ss_dssp             EEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCC-CSCEEEEECCCSSCCCHHHHHHSCCEEEEETS
T ss_pred             EEEEecCCcccccccccccccccccccccCCCCCCchHHHHhhccCc-ceeEeEeeccccccccccccccCCCceeEecc
Confidence            66655544445567789999999987654  2356677888888865 6899999976531        23479999999


Q ss_pred             CCCCCeecCceEeeccccceeEEEEceEEECCeeecee---cCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecch
Q 015145          150 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVC---EGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAEC  226 (412)
Q Consensus       150 ~D~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~---~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~  226 (412)
                      +|+++++|+++|+|+.+..+|.+.+++|.++++.+...   .....++||||++++++|.+++++|.+++++...     
T Consensus       181 ~d~~~~~g~~~~~~~~~~~~~~v~~~~i~v~g~~~~~~~~~~~~~~aiiDSGts~i~lp~~~~~~l~~~~~~~~~-----  255 (387)
T d2qp8a1         181 IDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASS-----  255 (387)
T ss_dssp             CCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTT-----
T ss_pred             cccccccCceEeecccccceeEEEEEEEEECCEecccccccCCccceEEecCCCeEeCCHHHHHHHHHHhccccc-----
Confidence            99999999999999999999999999999999998542   2356799999999999999999999999854300     


Q ss_pred             hhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhH
Q 015145          227 KLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTK  306 (412)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  306 (412)
                         ...                                                                        ..
T Consensus       256 ---~~~------------------------------------------------------------------------~~  260 (387)
T d2qp8a1         256 ---TEK------------------------------------------------------------------------FP  260 (387)
T ss_dssp             ---TSC------------------------------------------------------------------------CC
T ss_pred             ---ccc------------------------------------------------------------------------cC
Confidence               000                                                                        00


Q ss_pred             HHHHHHhhhhccCCCCCCCceeeeCCCC-----CCCCcEEEEECC------EEEEeCcccceEEeccc--cccceeeeee
Q 015145          307 EKVLSYINELCDSLPNPMGESIIDCDRI-----PTMPNVSFTIGD------KIFNLSPEQYILKTGEG--IAEVCISGFM  373 (412)
Q Consensus       307 ~~~~~~~~~~c~~~~~~~~~~~ipC~~~-----~~lp~l~f~~gg------~~~~i~p~~yl~~~~~~--~~~~C~~~i~  373 (412)
                      ...              ...+.++|...     ..+|.++|.|.+      .++.|+|++|+.+..+.  ....|+..+.
T Consensus       261 ~~~--------------~~~~~~~C~~~~~~~~~~fp~~~~~~~~~~~~~~~~~~i~p~~y~~~~~~~~~~~~~c~~~~~  326 (387)
T d2qp8a1         261 DGF--------------WLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI  326 (387)
T ss_dssp             HHH--------------HTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECE
T ss_pred             Ccc--------------ccceeeeeeecCCCccccccceEEEeccccccceEEEEECHHHheeeccccCCcCceEEEEEe
Confidence            000              00112234322     246889999853      68999999999987643  3456876554


Q ss_pred             eccCCCCCCCcEEEccccccceEEEEeCCCCeEEEEecC
Q 015145          374 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       374 ~~~~~~~~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      ..     ....||||.+|||++|+|||+|++|||||+|+
T Consensus       327 ~~-----~~~~~ILG~~Flr~~y~vfD~~~~~IGfA~a~  360 (387)
T d2qp8a1         327 SQ-----SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSA  360 (387)
T ss_dssp             EE-----ESSCEEECHHHHTTEEEEEETTTTEEEEEEET
T ss_pred             CC-----CCCCEEEhHHhhCcEEEEEECCCCEEEEEECC
Confidence            32     33579999999999999999999999999985

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=100.00  E-value=2.2e-35  Score=292.74  Aligned_cols=320  Identities=14%  Similarity=0.049  Sum_probs=212.8

Q ss_pred             ccccceeeec--CccCccceEEecCC--CCCC----------CCCCC-------CCCCCceEECCcEEEEEEcCce-EEE
Q 015145            3 NTLERLVLAL--PHKISVSYLIPAVP--ISGF----------HLQSA-------ISLFPAISIRGKSCEINYGSGS-ISG   60 (412)
Q Consensus         3 ~t~~~~~~~~--p~t~s~~~wvp~~~--~c~~----------~~~y~-------p~~Sst~~~~~~~~~i~Y~~gs-~~G   60 (412)
                      +.++..||+|  .||||+++||||+.  .|..          ++.|.       ...|+++......+.++|++|+ +.|
T Consensus        16 Y~~~i~iGtpliiDTGSs~~Wvpc~~c~~~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~Y~~Gs~~~G   95 (381)
T d1t6ex_          16 YTIPFHDGASLVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAG   95 (381)
T ss_dssp             EEEEEETTEEEEEETTCCCEEECCCTTCCCCCCBTTSHHHHHHHSSCCTTCCCCCC------CBCEECCBCTTTCCBCCE
T ss_pred             EEEEEEcCCceEEECCCCceeeccCCCCCCcccccCCchhhhccCcCCCCCCCccccCCCCCCCCceeEEEeCCCCEEEE
Confidence            4556666665  89999999999872  2222          12232       2245666667778999999998 789


Q ss_pred             EEEEEEEEECCeEEe----eeEEEEEEeecC---cccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEe
Q 015145           61 FFSQDNVEVGDVVVK----DQVFIEATREGS---LTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL  133 (412)
Q Consensus        61 ~~~~D~v~lg~~~~~----~~~fg~~~~~~~---~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l  133 (412)
                      .+++|+|++++....    ...++.+.....   ..+.....+||+|||+...+      +..+|.+++.+. ++|++|+
T Consensus        96 ~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGi~Glg~~~~s------~~~ql~~~~~~~-~~fsl~l  168 (381)
T d1t6ex_          96 SLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLA------LPAQVASAQKVA-NRFLLCL  168 (381)
T ss_dssp             EEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTSCTTEEEEEECSSSTTS------HHHHHHHHHTCC-SEEEEEC
T ss_pred             EEEEEEEEecccccccceeeEEeeeeeeccccccccccccCcceeeecCCCCcc------hHHHHhhhcCcc-eEEEeec
Confidence            999999999865433    234444433221   12334567999999987655      888998888775 7999999


Q ss_pred             cCCCCCCCCcEEEeCCCCCCCeecCceEeeccc---cceeEEEEceEEECCeeecee---cCCceEEEcCCCCCcccCHH
Q 015145          134 NRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTK---KGYWQFELGDILIGNQSTGVC---EGGCAAIVDSGTSLLAGPTP  207 (412)
Q Consensus       134 ~~~~~~~~~G~l~fGg~D~~~~~g~l~~~p~~~---~~~w~v~~~~i~v~~~~~~~~---~~~~~~ivDSGts~i~lP~~  207 (412)
                      .+...  ..+.+.||++|..++.|++.|+|+..   ..+|.+.++++.+++..+...   .....+++|||++++++|.+
T Consensus       169 ~~~~~--~~~~~~~g~~~~~~~~g~~~~~pi~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~i~DTGtt~~~lp~~  246 (381)
T d1t6ex_         169 PTGGP--GVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPD  246 (381)
T ss_dssp             CSSSC--EEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEECCCCTTCSCTTCEEECSSCSSEEECHH
T ss_pred             CCCcc--cceEeecccccccccCCceEEEeeeccCCCceeEEEEEEEeeCCeeeccCcccccCcceEEecCCceEECCHH
Confidence            77642  35677788899999999999999964   357999999999999987542   33567999999999999999


Q ss_pred             HHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccch
Q 015145          208 VVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCS  287 (412)
Q Consensus       208 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (412)
                      +++++.+.+....                 ......... . .|.    |...                           
T Consensus       247 ~~~~i~~~~~~~~-----------------~~~~~~~~~-~-~~~----~~~~---------------------------  276 (381)
T d1t6ex_         247 VYRPLMDAFTKAL-----------------AAQHANGAP-V-ARA----VEAV---------------------------  276 (381)
T ss_dssp             HHHHHHHHHHHHH-----------------HHC---------CCE----ECCC---------------------------
T ss_pred             HHHHHHHHHHHHh-----------------ccccccccc-c-ccc----cccc---------------------------
Confidence            9999999885430                 000000000 0 000    0000                           


Q ss_pred             hhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEE-CCEEEEeCcccceEEecccccc
Q 015145          288 ACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTI-GDKIFNLSPEQYILKTGEGIAE  366 (412)
Q Consensus       288 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~-gg~~~~i~p~~yl~~~~~~~~~  366 (412)
                                              ....+|...+..     ..+.....+|+|+|+| ++.++.|+|++|+++..+  ..
T Consensus       277 ------------------------~~~~~~~~~~~~-----~~~~~~~~~P~i~~~f~~~~~~~i~~~~y~~~~~~--~~  325 (381)
T d1t6ex_         277 ------------------------APFGVCYDTKTL-----GNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQ--GT  325 (381)
T ss_dssp             ------------------------TTCSCEEEGGGC-----CEETTEECCCCEEEEETTSCEEEECHHHHEEEEET--TE
T ss_pred             ------------------------CCcceeeccccc-----cccccccccccEEEEEcCCcEEEEChhHeEEEeCC--Cc
Confidence                                    000112211110     0122223689999999 589999999999987554  34


Q ss_pred             ceeeeeeecc--CCCCCCCcEEEccccccceEEEEeCCCCeEEEEecC
Q 015145          367 VCISGFMAFD--LPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  412 (412)
Q Consensus       367 ~C~~~i~~~~--~~~~~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~~  412 (412)
                      .|+..+....  ......+.||||++|||++|+|||++++|||||+++
T Consensus       326 ~Cl~i~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfA~~~  373 (381)
T d1t6ex_         326 ACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLP  373 (381)
T ss_dssp             EEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECC
T ss_pred             EEEEEEecccccCCCCCCCcEEECHHHhCcEEEEEECCCCEEEEEECC
Confidence            5754332211  112244679999999999999999999999999975

>d1qdma1 a.64.1.2 (A:1S-104S) (Pro)phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Swaposin
domain: (Pro)phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.65  E-value=2.1e-17  Score=135.52  Aligned_cols=101  Identities=53%  Similarity=1.002  Sum_probs=74.3

Q ss_pred             eeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeecc---ccccCCcccchhhhhHHHHHH
Q 015145          221 VVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKE---NVSAGDSAVCSACEMAVVWVQ  297 (412)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  297 (412)
                      +++++|+.+|++|++.|+++|.++++|+.+|.+.|+|+.+.............+.+   .....++..|.+||+++++++
T Consensus         1 ~ls~eC~~~V~~Y~~~ii~~L~~~~~P~~IC~~lglC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~v~~v~   80 (104)
T d1qdma1           1 VVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQ   80 (104)
T ss_dssp             BCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHTTCC---------------------------CHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCcccccccccchhhhhhhhccccccccCCCCCchhhHHHHHHHHH
Confidence            36899999999999999999999999999999999999877655543333322222   335667789999999999999


Q ss_pred             hhhhhhhhHHHHHHHhhhhccCCC
Q 015145          298 NQLKQKQTKEKVLSYINELCDSLP  321 (412)
Q Consensus       298 ~~~~~~~t~~~~~~~~~~~c~~~~  321 (412)
                      ..|.+|+|+++|++++++.|+++|
T Consensus        81 ~~l~~n~Te~eI~~~l~~vC~~LP  104 (104)
T d1qdma1          81 NQLAQNKTQDLILDYVNQLCNRLP  104 (104)
T ss_dssp             HHHHTTCCHHHHHHHHHHHTTCBC
T ss_pred             HHHHccccHHHHHHHHHHHHhhCc
Confidence            999999999999999999999887

>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: Saposin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=4e-05  Score=57.49  Aligned_cols=40  Identities=25%  Similarity=0.636  Sum_probs=38.0

Q ss_pred             cccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCC
Q 015145          283 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPN  322 (412)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~  322 (412)
                      ++.|+.|++++.++++.+.++.|+++|.+.+++.|..+|.
T Consensus         1 di~C~~C~~~v~~~~~~l~~~~t~~~I~~~l~~~C~~lp~   40 (78)
T d2gtga1           1 DVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPK   40 (78)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTSSCH
T ss_pred             CCccHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCc
Confidence            4789999999999999999999999999999999999885

>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Ameobapore A
domain: Ameobapore A
species: Entamoeba histolytica [TaxId: 5759]

Probab=97.15  E-value=0.00011  Score=55.23  Aligned_cols=42  Identities=24%  Similarity=0.502  Sum_probs=36.7

Q ss_pred             CcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCCC
Q 015145          282 DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPM  324 (412)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~  324 (412)
                      +...|..|+++|+.+.++++ +.|+++|.+.+++.|..+|+..
T Consensus         1 G~~~C~~C~~~v~~~~~l~~-~~t~~~I~~~l~~~C~~lp~~~   42 (77)
T d1of9a_           1 GEILCNLCTGLINTLENLLT-TKGADKVKDYISSLCNKASGFI   42 (77)
T ss_dssp             CCSSHHHHHHHHHHHHHHCS-SSCSHHHHHHHHHHHTTCSSTT
T ss_pred             CCcchHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHCChHH
Confidence            45789999999999999885 5689999999999999998643

>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Ameobapore A
domain: Ameobapore A
species: Entamoeba histolytica [TaxId: 5759]

Probab=97.13  E-value=7.7e-05  Score=56.05  Aligned_cols=48  Identities=17%  Similarity=0.349  Sum_probs=41.2

Q ss_pred             HHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhccccc
Q 015145          208 VVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC  257 (412)
Q Consensus       208 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~  257 (412)
                      .++.+-+.+++.  ++++|+.+|++|++.|++++.++.+|+.+|...|+|
T Consensus        30 ~l~~~C~~lp~~--~~~~C~~~v~~y~~~ii~~l~~~~~p~~iC~~l~lC   77 (77)
T d1of9a_          30 YISSLCNKASGF--IATLCTKVLDFGIDKLIQLIEDKVDANAICAKIHAC   77 (77)
T ss_dssp             HHHHHHTTCSST--THHHHHHHHHHCHHHHHHHHHHTCCHHHHHHHHSCC
T ss_pred             HHHHHHHHCChH--HHHHhHHHHHHHHHHHHHHHHHcCCHHHHHHhcCCC
Confidence            345555556544  789999999999999999999999999999999988

>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: Saposin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=7.2e-05  Score=56.02  Aligned_cols=37  Identities=41%  Similarity=0.816  Sum_probs=35.6

Q ss_pred             eecchhhhhhhchhhHHHHHhhCCCccchhhcccccc
Q 015145          222 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA  258 (412)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~  258 (412)
                      ++++|+.++++|++.|++++.++++|+.+|...++|.
T Consensus        42 ~~~~C~~~v~~y~~~ii~~l~~~~~p~~iC~~l~lCs   78 (78)
T d2gtga1          42 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS   78 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTSCC
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCcC
Confidence            7899999999999999999999999999999999994

>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Saposin B
domain: Saposin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00016  Score=54.50  Aligned_cols=48  Identities=25%  Similarity=0.607  Sum_probs=40.8

Q ss_pred             HHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccc
Q 015145          208 VVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA  258 (412)
Q Consensus       208 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~  258 (412)
                      ..+.+-+.+++.  +.+.|+.+|++|++.|++++ +..+|+.+|...|+|.
T Consensus        31 ~l~~~C~~lp~~--~~~~C~~~V~~y~~~ii~~l-~~~~P~~iC~~l~lC~   78 (78)
T d1n69a_          31 HVKEECDRLGPG--MADICKNYISQYSEIAIQMM-MHMQPKEICALVGFCD   78 (78)
T ss_dssp             HHHHHGGGGCTT--HHHHHHHHHHHHHHHHHHHH-TTSCHHHHHHHTTSCC
T ss_pred             HHHHHHHhCChH--HHHHhHHHHHHHHHHHHHHH-HcCCHHHHHhHcCCCC
Confidence            355666667755  78999999999999999998 5699999999999994

>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: NK-lysin, NKL
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.93  E-value=0.00024  Score=53.12  Aligned_cols=48  Identities=17%  Similarity=0.445  Sum_probs=41.7

Q ss_pred             HHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccc
Q 015145          208 VVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA  258 (412)
Q Consensus       208 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~  258 (412)
                      .++.+.+.++   .+.++|+.+|++|.+.|++++.++.+|+.+|+..++|.
T Consensus        30 ~l~~~C~~lp---~~~~~C~~~v~~y~~~ii~~l~~~~~p~~iC~~l~lC~   77 (78)
T d1nkla_          30 AASQVCDKLK---ILRGLCKKIMRSFLRRISWDILTGKKPQAICVDIKICK   77 (78)
T ss_dssp             HHHHHHHHSC---STHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCSC
T ss_pred             HHHHHHhcCC---cHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCcCC
Confidence            3455666665   36889999999999999999999999999999999996

>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: NK-lysin, NKL
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.87  E-value=0.00018  Score=53.84  Aligned_cols=39  Identities=15%  Similarity=0.429  Sum_probs=37.1

Q ss_pred             ccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCC
Q 015145          284 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPN  322 (412)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~  322 (412)
                      ..|..|+++++++.+.+.++.|+++|.+.+++.|..+|.
T Consensus         2 ~~C~~C~~~v~~~~~~l~~~~t~~~I~~~l~~~C~~lp~   40 (78)
T d1nkla_           2 YFCESCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLKI   40 (78)
T ss_dssp             CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCS
T ss_pred             CccHhhHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCc
Confidence            469999999999999999999999999999999999985

>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Saposin B
domain: Saposin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00045  Score=51.83  Aligned_cols=39  Identities=26%  Similarity=0.480  Sum_probs=35.3

Q ss_pred             cchhhhhHHHHHHhhhhhhhh-HHHHHHHhhhhccCCCCC
Q 015145          285 VCSACEMAVVWVQNQLKQKQT-KEKVLSYINELCDSLPNP  323 (412)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~t-~~~~~~~~~~~c~~~~~~  323 (412)
                      .|..|+++++.+.+++..|.| +++|.+.+++.|..+|..
T Consensus         3 ~C~~C~~~v~~v~~~l~~n~t~~~~I~~~l~~~C~~lp~~   42 (78)
T d1n69a_           3 VCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPG   42 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHGGGGCTT
T ss_pred             chHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhCChH
Confidence            699999999999999999887 566999999999999853

>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: Granulysin, NKG5 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.00095  Score=49.54  Aligned_cols=37  Identities=16%  Similarity=0.234  Sum_probs=33.8

Q ss_pred             cchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCC
Q 015145          285 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPN  322 (412)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~  322 (412)
                      .|..|+++|..+.++++ |.|+++|.+.+++.|..+|.
T Consensus         3 ~c~tC~~vv~~ve~l~~-n~t~~~I~~~l~~~C~~lp~   39 (74)
T d1l9la_           3 DYRTCLTIVQKLKKMVD-KPTQRSVSNAATRVCRTGRS   39 (74)
T ss_dssp             HHHHHHHHHHHHHHHCS-SCCHHHHHHHHHHGGGSSCH
T ss_pred             ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHhHHHHCCH
Confidence            48999999999999885 67999999999999999985

>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: Granulysin, NKG5 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.00097  Score=49.49  Aligned_cols=44  Identities=16%  Similarity=0.360  Sum_probs=36.1

Q ss_pred             HHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcc
Q 015145          209 VTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQI  254 (412)
Q Consensus       209 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  254 (412)
                      ++.+.+.+++.  +.++|+.+|++|.+.|++++.++.+|+.+|+..
T Consensus        30 l~~~C~~lp~~--~~~~C~~lv~~Y~~~ii~~l~~~~~P~~IC~~l   73 (74)
T d1l9la_          30 ATRVCRTGRSR--WRDVCRNFMRRYQSRVIQGLVAGETAQQICEDL   73 (74)
T ss_dssp             HHHGGGSSCHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHGGG
T ss_pred             HHhHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHhh
Confidence            34444455543  789999999999999999999999999999753