Citrus Sinensis ID: 015173

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
MQLRKLSLQPSSPLRVLSSKYPFPLLQKWSRFSSSSSSESQIPNSHSVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEASELNHYSRTAQKNRPSL
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHccccccccccccHHHHHHcccccccEEEEEccccccccccEEEEEEHHccccccEEEEEccccEEEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHccccccHHHccHHHHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHcccccccccccccccccc
cHHHHHHHcccHHHHHHHcccccccHcccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHccHHHHHcEEEEEEccHHHHHHHHHHHcccccccccccccEEEccccccccEEEcccHHHccccccEEEEEHHHHHccccHEEEEcccccEEEEEEEcccccEEEEEccccccHHHccccccccccHcccccccEEEEccHHHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHccccccccccccccccEcccHHHHHHHHHHcccccccccccccccccc
mqlrklslqpssplrvlsskypfpllqkwsrfssssssesqipnshsveplddnrsehaSTAIsidrsglynppehsherKLESELVKHLKGIIKFRGGPISVAEYMEEVltnpkagfyinrdvfgaegdfitspevSQMFGEMVGVWAMCLWEqmgqpnrvnlvelgpgrgtLMADLLRGASKFKNFTESLHIHLVecsptlqklqhhnlkcmdennandnveertisslagtpvswhaaleqvpsgfptIIVAHEFydalpvhqfqkttRGWCEKLVDIAedssfrfvlspqptpaTLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKrigsdgggaLIIDyglngvvtDSLQAIRKHKfvdlfdnpgsadlsayVDFASISHSAEEASELNHYsrtaqknrpsl
mqlrklslqpssplrvlssKYPFPLLQKWSRFSSSSSSESQIPNSHSVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAeeaselnhysrtaqknrpsl
MQLRKLSLQPSSPLRVLSSKYPFPLLQKWsrfssssssesqipnshsVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFasishsaeeaseLNHYSRTAQKNRPSL
*************************************************************************************LVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCM*************ISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFAS*************************
****************************************************************************************HLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEASELNHYSRT*Q******
MQLRKLSLQPSSPLRVLSSKYPFPLLQKWS****************************ASTAISIDRSGLY**********LESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHS*********************
****K**LQPSSPLRVLSSKYPFPLLQKW********************************AI*IDRSGLYNP*********ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEA*****************
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SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQLRKLSLQPSSPLRVLSSKYPFPLLQKWSRFSSSSSSESQIPNSHSVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEASELNHYSRTAQKNRPSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query412 2.2.26 [Sep-21-2011]
Q54S83484 NADH dehydrogenase [ubiqu yes no 0.851 0.725 0.410 8e-77
Q08BY0422 NADH dehydrogenase [ubiqu yes no 0.723 0.706 0.438 1e-70
Q9VGR2437 NADH dehydrogenase [ubiqu yes no 0.752 0.709 0.449 1e-68
Q9CWG8436 NADH dehydrogenase [ubiqu yes no 0.769 0.727 0.434 2e-68
Q5XI79436 NADH dehydrogenase [ubiqu yes no 0.783 0.740 0.428 2e-67
Q7L592441 NADH dehydrogenase [ubiqu yes no 0.723 0.675 0.425 5e-66
Q5BKM6430 NADH dehydrogenase [ubiqu yes no 0.728 0.697 0.440 1e-65
Q2KHV5441 NADH dehydrogenase [ubiqu yes no 0.735 0.687 0.431 2e-65
Q6GQ37437 NADH dehydrogenase [ubiqu N/A no 0.754 0.711 0.416 2e-64
Q09644426 NADH dehydrogenase [ubiqu yes no 0.723 0.699 0.370 3e-48
>sp|Q54S83|NDUF7_DICDI NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Dictyostelium discoideum GN=midA PE=1 SV=1 Back     alignment and function desciption
 Score =  288 bits (736), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 156/380 (41%), Positives = 225/380 (59%), Gaps = 29/380 (7%)

Query: 32  FSSSSSSESQIPNSHSVEPLDDNRSEHASTA--------ISIDRSGLYNPPEHSHERKLE 83
           F ++S S +   N + ++   D   EH   A        +S D+SGL   P+   + +  
Sbjct: 28  FINNSLSYTTTSNENDIK---DKNEEHDHRAKGKGRELLLSFDKSGLAQFPKQVFKNRKY 84

Query: 84  --SELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMF 141
             ++  K+L+ I K RG P+S+  +++EVLTNPK G+Y+N+DVFG  GDFIT+PEVSQ+F
Sbjct: 85  PITDFEKYLQDITKVRG-PMSIDTFIKEVLTNPKYGYYMNKDVFGKGGDFITAPEVSQLF 143

Query: 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201
           GEM+G+W +  WE MG+P ++ +VE+GPGRGTLM D+LR    FK F +S+ +HLVE SP
Sbjct: 144 GEMIGIWCVATWEAMGKPKKLQIVEMGPGRGTLMKDILRSTKVFKEFYDSISVHLVEASP 203

Query: 202 TLQKLQHHNLKCMDENNANDNVEERTISSL-AGTPVSWHAALEQVPSGFPTIIVAHEFYD 260
             +K Q  NL    +     N + +TI     G  V+W   LE+VP+  PT+ +A EF+D
Sbjct: 204 ANKKTQKQNLLYFKDKAI--NFDHKTIGETPNGIKVTWVGKLEEVPTDIPTLFLAQEFFD 261

Query: 261 ALPVH--QFQKTTRGWCEKLV--DIAEDSSF--RFVLSPQPTPATLFLLQRC-KWAADKE 313
           ALP+H  +F +    WCE LV  DI E   +  RFV S  PT  T  +     ++  D  
Sbjct: 262 ALPIHVFRFSREKNDWCEVLVDEDITEHGEYYLRFVQSKGPTLMTTAVKHLLPEFGLDG- 320

Query: 314 LEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDN 373
                 +E+    + ++  +A RI   GG ALIIDYG + +V  SLQAIR H+FVD+ D 
Sbjct: 321 ----YQVELGLAGLAISQQIANRIDKSGGAALIIDYGYDKIVKSSLQAIRDHEFVDILDK 376

Query: 374 PGSADLSAYVDFASISHSAE 393
           PG+ADLS +VDF +I  + +
Sbjct: 377 PGTADLSVWVDFQTIRKTVK 396
Involved in mitochondrial function. Cells lacking midA have lower levels of ATP and no glycogen.
Dictyostelium discoideum (taxid: 44689)
>sp|Q08BY0|NDUF7_DANRE NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Danio rerio GN=ndufaf7 PE=2 SV=1 Back     alignment and function description
>sp|Q9VGR2|NDUF7_DROME NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 homolog OS=Drosophila melanogaster GN=CG17726 PE=1 SV=1 Back     alignment and function description
>sp|Q9CWG8|NDUF7_MOUSE NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Mus musculus GN=Ndufaf7 PE=2 SV=4 Back     alignment and function description
>sp|Q5XI79|NDUF7_RAT NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Rattus norvegicus GN=Ndufaf7 PE=2 SV=1 Back     alignment and function description
>sp|Q7L592|NDUF7_HUMAN NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Homo sapiens GN=NDUFAF7 PE=1 SV=1 Back     alignment and function description
>sp|Q5BKM6|NDUF7_XENTR NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Xenopus tropicalis GN=ndufaf7 PE=2 SV=1 Back     alignment and function description
>sp|Q2KHV5|NDUF7_BOVIN NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Bos taurus GN=NDUFAF7 PE=2 SV=2 Back     alignment and function description
>sp|Q6GQ37|NDUF7_XENLA NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Xenopus laevis GN=ndufaf7 PE=2 SV=1 Back     alignment and function description
>sp|Q09644|NDUF7_CAEEL NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 homolog OS=Caenorhabditis elegans GN=ZK1128.1 PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query412
255552842490 conserved hypothetical protein [Ricinus 0.864 0.726 0.820 1e-177
225452686483 PREDICTED: protein midA, mitochondrial [ 0.859 0.732 0.8 1e-172
449461913493 PREDICTED: protein midA, mitochondrial-l 0.864 0.722 0.752 1e-165
449505855493 PREDICTED: protein midA, mitochondrial-l 0.864 0.722 0.752 1e-165
334185683471 uncharacterized protein [Arabidopsis tha 0.817 0.715 0.782 1e-164
42565270471 uncharacterized protein [Arabidopsis tha 0.817 0.715 0.782 1e-164
356538547464 PREDICTED: protein midA, mitochondrial-l 0.817 0.726 0.813 1e-164
297815160471 hypothetical protein ARALYDRAFT_905140 [ 0.817 0.715 0.780 1e-163
357473955449 MidA-like protein [Medicago truncatula] 0.842 0.772 0.772 1e-162
217074438449 unknown [Medicago truncatula] 0.842 0.772 0.766 1e-162
>gi|255552842|ref|XP_002517464.1| conserved hypothetical protein [Ricinus communis] gi|223543475|gb|EEF45006.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 293/357 (82%), Positives = 328/357 (91%), Gaps = 1/357 (0%)

Query: 41  QIPNSHSVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGP 100
           +IP+S+ VE L+DN  + +ST +S+DRSGLYNPPEHSHE   ESEL KHLKGIIKFRGGP
Sbjct: 49  EIPHSNLVEQLEDNNVQ-SSTTVSVDRSGLYNPPEHSHEPNSESELFKHLKGIIKFRGGP 107

Query: 101 ISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPN 160
           I+VAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWA+CLWEQM QP 
Sbjct: 108 ITVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWALCLWEQMEQPK 167

Query: 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNAN 220
            VNLVELGPGRGTLMADLLRGASKFK+FTESLHIH+VECSP LQKLQHHNLKC+D+NN+ 
Sbjct: 168 SVNLVELGPGRGTLMADLLRGASKFKSFTESLHIHMVECSPALQKLQHHNLKCVDDNNSC 227

Query: 221 DNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVD 280
            + EERTIS+LAGTP+SWH +LEQVP+G PTII+AHEFYDALPVHQFQ+ +RGWCEK+VD
Sbjct: 228 GSGEERTISTLAGTPISWHTSLEQVPTGSPTIIIAHEFYDALPVHQFQRASRGWCEKMVD 287

Query: 281 IAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSD 340
           +AEDS FRFVLSPQPTPATL+L++RCKWAA +E+EKL HIEVC KA++LT  +AKRI SD
Sbjct: 288 VAEDSMFRFVLSPQPTPATLYLVKRCKWAAPEEIEKLNHIEVCPKAIDLTCTIAKRISSD 347

Query: 341 GGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEASE 397
           GGGALIIDYGLNGVV+DSLQAIRKHKFVD+ DNPGSADLSAYVDFASI HSAEEASE
Sbjct: 348 GGGALIIDYGLNGVVSDSLQAIRKHKFVDILDNPGSADLSAYVDFASIRHSAEEASE 404

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225452686|ref|XP_002276826.1| PREDICTED: protein midA, mitochondrial [Vitis vinifera] gi|296087782|emb|CBI35038.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449461913|ref|XP_004148686.1| PREDICTED: protein midA, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449505855|ref|XP_004162586.1| PREDICTED: protein midA, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|334185683|ref|NP_001189995.1| uncharacterized protein [Arabidopsis thaliana] gi|332643958|gb|AEE77479.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42565270|ref|NP_189511.2| uncharacterized protein [Arabidopsis thaliana] gi|95147286|gb|ABF57278.1| At3g28700 [Arabidopsis thaliana] gi|332643957|gb|AEE77478.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356538547|ref|XP_003537764.1| PREDICTED: protein midA, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|297815160|ref|XP_002875463.1| hypothetical protein ARALYDRAFT_905140 [Arabidopsis lyrata subsp. lyrata] gi|297321301|gb|EFH51722.1| hypothetical protein ARALYDRAFT_905140 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357473955|ref|XP_003607262.1| MidA-like protein [Medicago truncatula] gi|355508317|gb|AES89459.1| MidA-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|217074438|gb|ACJ85579.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query412
TAIR|locus:2095527471 AT3G28700 [Arabidopsis thalian 0.900 0.787 0.708 9.3e-146
DICTYBASE|DDB_G0282615484 midA "DUF185 family protein" [ 0.766 0.652 0.448 1.4e-69
ZFIN|ZDB-GENE-060929-628422 zgc:153989 "zgc:153989" [Danio 0.706 0.689 0.451 5.2e-65
FB|FBgn0037880437 CG17726 [Drosophila melanogast 0.730 0.688 0.464 2e-63
MGI|MGI:1920944436 Ndufaf7 "NADH dehydrogenase (u 0.745 0.704 0.450 5.4e-63
RGD|1311578436 Ndufaf7 "NADH dehydrogenase (u 0.764 0.722 0.441 2.3e-62
UNIPROTKB|Q5BKM6430 ndufaf7 "NADH dehydrogenase [u 0.762 0.730 0.429 3.4e-61
UNIPROTKB|F1MJQ5441 C11H2orf56 "Uncharacterized pr 0.713 0.666 0.444 5.5e-61
UNIPROTKB|E2R8S9440 C2orf56 "Uncharacterized prote 0.699 0.654 0.446 1.9e-60
UNIPROTKB|Q2KHV5441 NDUFAF7 "NADH dehydrogenase [u 0.713 0.666 0.441 3.1e-60
TAIR|locus:2095527 AT3G28700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
 Identities = 272/384 (70%), Positives = 312/384 (81%)

Query:     3 LRKLSLQPSSPLRVLSSKYPFPLLQKWXXXXXXXXXXXXXXXXXXVEPLDDNRS-EHAST 61
             LRKL  Q SS  R+L S  P PL  K                     P  ++ + EH  T
Sbjct:     2 LRKLLTQTSSR-RLLFSGVP-PLFSK------STISPFSSLSSSPEPPSSESPAVEHPGT 53

Query:    62 AISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYIN 121
              ISIDRS LY PP+HSHE   +SELVKHLK IIKFRGGPISVAEYMEEVLTNPKAGFY+N
Sbjct:    54 TISIDRSSLYTPPDHSHESTPDSELVKHLKSIIKFRGGPISVAEYMEEVLTNPKAGFYMN 113

Query:   122 RDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRG 181
             RDVFGA+GDFITSPEVSQMFGEM+GVW +CLWEQMG+P RVNLVELGPGRGTLMADLLRG
Sbjct:   114 RDVFGAQGDFITSPEVSQMFGEMIGVWTVCLWEQMGRPERVNLVELGPGRGTLMADLLRG 173

Query:   182 ASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAA 241
              SKFKNFTESLHIHLVECSP LQKLQH NLKC DE+++    E++ +SSLAGTPV WHA 
Sbjct:   174 TSKFKNFTESLHIHLVECSPALQKLQHQNLKCTDESSS----EKKAVSSLAGTPVHWHAT 229

Query:   242 LEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLF 301
             L++VPSG PT+I+AHEFYDALPVHQFQK+TRGWCEK+VD+ EDS FRFVLSPQPTPA L+
Sbjct:   230 LQEVPSGVPTLIIAHEFYDALPVHQFQKSTRGWCEKMVDVGEDSKFRFVLSPQPTPAALY 289

Query:   302 LLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQA 361
             L++RC WA  +E EK+EH+E+  K+M+LT  MAKRIGSDGGGALIIDYG+N +++DSLQA
Sbjct:   290 LMKRCTWATPEEREKMEHVEISPKSMDLTQEMAKRIGSDGGGALIIDYGMNAIISDSLQA 349

Query:   362 IRKHKFVDLFDNPGSADLSAYVDF 385
             IRKHKFV++ D+PGSADLSAYVDF
Sbjct:   350 IRKHKFVNILDDPGSADLSAYVDF 373
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IDA
GO:0015979 "photosynthesis" evidence=RCA
GO:0045333 "cellular respiration" evidence=RCA
DICTYBASE|DDB_G0282615 midA "DUF185 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-628 zgc:153989 "zgc:153989" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0037880 CG17726 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1920944 Ndufaf7 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311578 Ndufaf7 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5BKM6 ndufaf7 "NADH dehydrogenase [ubiquinone] complex I, assembly factor 7" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|F1MJQ5 C11H2orf56 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R8S9 C2orf56 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KHV5 NDUFAF7 "NADH dehydrogenase [ubiquinone] complex I, assembly factor 7" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020877001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (483 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00021858001
SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (339 aa)
  ••  • 0.551
GSVIVG00014042001
SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (158 aa)
  •     0.409
GSVIVG00022315001
RecName- Full=NADH-ubiquinone oxidoreductase 75 kDa subunit; EC=1.6.5.3; (746 aa)
  ••    0.401

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
COG1565370 COG1565, COG1565, Uncharacterized conserved protei 5e-73
pfam02636241 pfam02636, Methyltransf_28, Putative S-adenosyl-L- 2e-72
>gnl|CDD|224481 COG1565, COG1565, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
 Score =  232 bits (594), Expect = 5e-73
 Identities = 106/310 (34%), Positives = 159/310 (51%), Gaps = 40/310 (12%)

Query: 98  GGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMG 157
           GGPIS +++ME  L +P+ G+Y +    G +GDFIT+PE+SQ+FGE++    + LW+++G
Sbjct: 15  GGPISFSDFMELALYDPEHGYYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELG 74

Query: 158 QPNRVNLVELGPGRGTLMADLLRGASK-FKNFTESLHIHLVECSPTLQKLQHHNLKCMDE 216
           +P  + LVE+G GRGTL +D+LR   + +    E+L  +++E SP L+  Q   LK    
Sbjct: 75  RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK---- 130

Query: 217 NNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCE 276
               D              + W   +E +P  FP I+V++E +DALPV QF +T   + E
Sbjct: 131 -ATED-------------LIRWVEWVEDLPKKFPGIVVSNELFDALPVEQFIRTKGLFVE 176

Query: 277 KLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKR 336
           +   +  D+  R V S          L     A   E E    +EV      L  A+A+R
Sbjct: 177 R--VVVLDAEGRLVFSHAINELIDEAL-LPLDA--PEAEDGYILEVSPAREALLKAIAER 231

Query: 337 IGSDGGGALIIDYG-----------LNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDF 385
           +    G  L IDYG             G    +LQA R H   D   NPG ADL+A+VDF
Sbjct: 232 LER--GVFLFIDYGYPAEEYYHPRRAYG---TTLQAYRHHVHDDPLANPGLADLTAHVDF 286

Query: 386 ASISHSAEEA 395
            +++ +A+ A
Sbjct: 287 TALAKAAKAA 296

Length = 370
>gnl|CDD|217158 pfam02636, Methyltransf_28, Putative S-adenosyl-L-methionine-dependent methyltransferase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 412
COG1565370 Uncharacterized conserved protein [Function unknow 100.0
KOG2901415 consensus Uncharacterized conserved protein [Funct 100.0
PF02636252 Methyltransf_28: Putative S-adenosyl-L-methionine- 100.0
PHA03412241 putative methyltransferase; Provisional 96.99
PF05175170 MTS: Methyltransferase small domain; InterPro: IPR 96.65
TIGR00740239 methyltransferase, putative. A simple BLAST search 96.59
PRK14896258 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 96.34
PF00398262 RrnaAD: Ribosomal RNA adenine dimethylase; InterPr 96.31
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 96.31
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 96.02
smart00650169 rADc Ribosomal RNA adenine dimethylases. 95.91
TIGR03587204 Pse_Me-ase pseudaminic acid biosynthesis-associate 95.9
PRK01683258 trans-aconitate 2-methyltransferase; Provisional 95.88
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 95.83
PF0824299 Methyltransf_12: Methyltransferase domain; InterPr 95.73
TIGR03438301 probable methyltransferase. This model represents 95.69
PRK11036255 putative S-adenosyl-L-methionine-dependent methylt 95.58
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 95.56
PRK06202232 hypothetical protein; Provisional 95.49
COG0030259 KsgA Dimethyladenosine transferase (rRNA methylati 95.47
TIGR02072240 BioC biotin biosynthesis protein BioC. This enzyme 95.46
PHA03411279 putative methyltransferase; Provisional 95.43
TIGR02469124 CbiT precorrin-6Y C5,15-methyltransferase (decarbo 95.31
PRK00274272 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 95.29
PRK07580230 Mg-protoporphyrin IX methyl transferase; Validated 95.25
TIGR00755253 ksgA dimethyladenosine transferase. Alternate name 95.22
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 95.18
TIGR02021219 BchM-ChlM magnesium protoporphyrin O-methyltransfe 95.06
PRK13944205 protein-L-isoaspartate O-methyltransferase; Provis 95.05
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 95.01
PRK09328275 N5-glutamine S-adenosyl-L-methionine-dependent met 95.0
PF13679141 Methyltransf_32: Methyltransferase domain 94.89
KOG1540296 consensus Ubiquinone biosynthesis methyltransferas 94.88
TIGR03533284 L3_gln_methyl protein-(glutamine-N5) methyltransfe 94.83
PRK11805307 N5-glutamine S-adenosyl-L-methionine-dependent met 94.73
PRK08317241 hypothetical protein; Provisional 94.57
PRK08287187 cobalt-precorrin-6Y C(15)-methyltransferase; Valid 94.56
PRK00121202 trmB tRNA (guanine-N(7)-)-methyltransferase; Revie 94.46
PLN02244340 tocopherol O-methyltransferase 94.45
PRK13942212 protein-L-isoaspartate O-methyltransferase; Provis 94.43
PTZ00338294 dimethyladenosine transferase-like protein; Provis 94.38
KOG2361264 consensus Predicted methyltransferase [General fun 94.32
TIGR02987 524 met_A_Alw26 type II restriction m6 adenine DNA met 94.2
PF05185448 PRMT5: PRMT5 arginine-N-methyltransferase; InterPr 94.16
PRK09489342 rsmC 16S ribosomal RNA m2G1207 methyltransferase; 94.12
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 94.06
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 93.81
PRK07402196 precorrin-6B methylase; Provisional 93.73
PRK00107187 gidB 16S rRNA methyltransferase GidB; Reviewed 93.72
TIGR00080215 pimt protein-L-isoaspartate(D-aspartate) O-methylt 93.71
TIGR00536284 hemK_fam HemK family putative methylases. The gene 93.69
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 93.67
PRK15001378 SAM-dependent 23S ribosomal RNA mG1835 methyltrans 93.65
PRK11088272 rrmA 23S rRNA methyltransferase A; Provisional 93.64
PRK11705383 cyclopropane fatty acyl phospholipid synthase; Pro 93.62
PRK00377198 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; 93.59
PF13659117 Methyltransf_26: Methyltransferase domain; PDB: 3G 93.56
TIGR03534251 RF_mod_PrmC protein-(glutamine-N5) methyltransfera 93.48
PF02384311 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T 93.35
TIGR00091194 tRNA (guanine-N(7)-)-methyltransferase. In E. coli 93.33
PF07757112 AdoMet_MTase: Predicted AdoMet-dependent methyltra 93.31
COG2813300 RsmC 16S RNA G1207 methylase RsmC [Translation, ri 93.22
COG3963194 Phospholipid N-methyltransferase [Lipid metabolism 93.22
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 93.21
TIGR03704251 PrmC_rel_meth putative protein-(glutamine-N5) meth 92.95
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 92.87
PRK01544 506 bifunctional N5-glutamine S-adenosyl-L-methionine- 92.8
TIGR00138181 gidB 16S rRNA methyltransferase GidB. GidB (glucos 92.79
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 92.76
PRK10258251 biotin biosynthesis protein BioC; Provisional 92.73
PRK00312212 pcm protein-L-isoaspartate O-methyltransferase; Re 92.4
PF05401201 NodS: Nodulation protein S (NodS); InterPro: IPR00 92.24
PRK05785226 hypothetical protein; Provisional 92.23
PF0824195 Methyltransf_11: Methyltransferase domain; InterPr 92.09
PRK00811283 spermidine synthase; Provisional 92.01
COG2518209 Pcm Protein-L-isoaspartate carboxylmethyltransfera 91.83
PRK04457262 spermidine synthase; Provisional 91.68
TIGR01983224 UbiG ubiquinone biosynthesis O-methyltransferase. 91.66
PRK11207197 tellurite resistance protein TehB; Provisional 91.54
PF01135209 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl 91.39
TIGR00537179 hemK_rel_arch HemK-related putative methylase. The 91.37
KOG2904328 consensus Predicted methyltransferase [General fun 91.19
cd02440107 AdoMet_MTases S-adenosylmethionine-dependent methy 91.18
PLN02233261 ubiquinone biosynthesis methyltransferase 90.99
TIGR00417270 speE spermidine synthase. the SpeE subunit of sper 90.93
PRK13943322 protein-L-isoaspartate O-methyltransferase; Provis 90.86
COG2263198 Predicted RNA methylase [Translation, ribosomal st 90.57
KOG0820315 consensus Ribosomal RNA adenine dimethylase [RNA p 90.48
PF08123205 DOT1: Histone methylation protein DOT1 ; InterPro: 90.4
PRK14967223 putative methyltransferase; Provisional 90.4
PF05206259 TRM13: Methyltransferase TRM13; InterPro: IPR00787 90.31
PRK11873272 arsM arsenite S-adenosylmethyltransferase; Reviewe 90.23
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 90.17
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 90.13
PRK04266226 fibrillarin; Provisional 90.04
PRK12335287 tellurite resistance protein TehB; Provisional 89.99
PRK14966423 unknown domain/N5-glutamine S-adenosyl-L-methionin 89.59
PLN02336475 phosphoethanolamine N-methyltransferase 89.49
PLN02585315 magnesium protoporphyrin IX methyltransferase 89.44
COG4106257 Tam Trans-aconitate methyltransferase [General fun 89.16
COG2890280 HemK Methylase of polypeptide chain release factor 89.14
TIGR03439319 methyl_EasF probable methyltransferase domain, Eas 89.1
PRK14968188 putative methyltransferase; Provisional 88.97
COG4123248 Predicted O-methyltransferase [General function pr 88.93
PF06325295 PrmA: Ribosomal protein L11 methyltransferase (Prm 88.78
COG2519256 GCD14 tRNA(1-methyladenosine) methyltransferase an 88.48
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 88.4
smart00828224 PKS_MT Methyltransferase in polyketide synthase (P 88.28
TIGR01444143 fkbM_fam methyltransferase, FkbM family. Members o 88.07
PRK00517250 prmA ribosomal protein L11 methyltransferase; Revi 88.01
TIGR00438188 rrmJ cell division protein FtsJ. 87.96
PRK05134233 bifunctional 3-demethylubiquinone-9 3-methyltransf 87.5
PF01596205 Methyltransf_3: O-methyltransferase; InterPro: IPR 87.38
PLN02490340 MPBQ/MSBQ methyltransferase 87.33
PRK14121390 tRNA (guanine-N(7)-)-methyltransferase; Provisiona 86.86
PF07021193 MetW: Methionine biosynthesis protein MetW; InterP 86.72
TIGR00406288 prmA ribosomal protein L11 methyltransferase. Ribo 86.5
PRK10909199 rsmD 16S rRNA m(2)G966-methyltransferase; Provisio 86.36
PLN02366308 spermidine synthase 86.12
PLN02781234 Probable caffeoyl-CoA O-methyltransferase 85.83
TIGR00452314 methyltransferase, putative. Known examples to dat 85.48
KOG4300252 consensus Predicted methyltransferase [General fun 85.27
PF00891241 Methyltransf_2: O-methyltransferase; InterPro: IPR 85.01
COG0421282 SpeE Spermidine synthase [Amino acid transport and 84.91
PRK13168443 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe 84.88
TIGR02081194 metW methionine biosynthesis protein MetW. This pr 84.81
PF02390195 Methyltransf_4: Putative methyltransferase ; Inter 84.76
PRK01581374 speE spermidine synthase; Validated 84.54
PRK11188209 rrmJ 23S rRNA methyltransferase J; Provisional 84.38
COG0220227 Predicted S-adenosylmethionine-dependent methyltra 84.32
PF08704247 GCD14: tRNA methyltransferase complex GCD14 subuni 83.76
PRK03522315 rumB 23S rRNA methyluridine methyltransferase; Rev 83.71
PRK06922677 hypothetical protein; Provisional 83.61
COG2264300 PrmA Ribosomal protein L11 methylase [Translation, 83.48
PLN02336 475 phosphoethanolamine N-methyltransferase 83.3
PF10294173 Methyltransf_16: Putative methyltransferase; Inter 83.08
PTZ00146293 fibrillarin; Provisional 83.04
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 83.02
TIGR02143353 trmA_only tRNA (uracil-5-)-methyltransferase. This 81.7
COG2230283 Cfa Cyclopropane fatty acid synthase and related m 81.65
PRK04148134 hypothetical protein; Provisional 80.61
PF03291331 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 80.5
PLN02823336 spermine synthase 80.37
>COG1565 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=7.7e-76  Score=584.49  Aligned_cols=295  Identities=35%  Similarity=0.574  Sum_probs=253.2

Q ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCCccCCCCCCCCCCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEE
Q 015173           85 ELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNL  164 (412)
Q Consensus        85 ~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~~~~~~G~~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~I  164 (412)
                      .+..+|+..|+.. |||||++||++|||+|++|||+++.+||+.||||||||||++|||+||.||.++|++.|.|.++.|
T Consensus         3 ~~~~~~~~~i~~~-g~i~f~~fM~~~L~~p~~GYYs~~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~l   81 (370)
T COG1565           3 LLALIIRALIAQG-GPISFSDFMELALYDPEHGYYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKL   81 (370)
T ss_pred             cHHHHHHHHHhcC-CCccHHHHHHHHHcCCCCcccccchhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceE
Confidence            4677888888887 999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             EEEcCCcchhHHHHHHHHh-cCcCccccceEEEEecChhhHHHHHhhcccccccCcCCcccceeeccCCCCceeeccccc
Q 015173          165 VELGPGRGTLMADLLRGAS-KFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALE  243 (412)
Q Consensus       165 vEiGaG~GtLa~DIL~~l~-~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~~l~  243 (412)
                      ||||||+|+||+|||++++ ..|++|+.++|+|||+||.||++||++|+...                  ..+.|++.++
T Consensus        82 vEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~------------------~~~~~~~~~e  143 (370)
T COG1565          82 VEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE------------------DLIRWVEWVE  143 (370)
T ss_pred             EEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc------------------cchhHHHHHH
Confidence            9999999999999999995 68999999999999999999999999997632                  2688888889


Q ss_pred             cCCCCCCEEEEeeeccccccccEEEecCCeeEEEEEEEcCCCceEEEeCCCCChhhHHHHHHhhhhhcccCCCCcEEEEe
Q 015173          244 QVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVC  323 (412)
Q Consensus       244 ~lp~~~~~~iiANEffDALPv~~f~~~~~~w~E~~V~~~~~~~f~~~~~p~~~~~~~~l~~~~~~~~~~~~~~g~~~Ei~  323 (412)
                      ++|.++++||++|||||||||++|.++++.|+|.+|.-+.++++.|. .+. ...   +...+..+......+|+.+|++
T Consensus       144 ~~p~~~~~i~~~NElfDAlPv~q~~~~~~~~~Er~~~~~~~~~~~~~-~~~-~~~---~~~~ll~l~~~~~~~g~~~E~~  218 (370)
T COG1565         144 DLPKKFPGIVVSNELFDALPVEQFIRTKGLFVERVVVLDAEGRLVFS-HAI-NEL---IDEALLPLDAPEAEDGYILEVS  218 (370)
T ss_pred             hccccCceEEEechhhccccceeEeccCceEEEEeeccCcccceeec-ccc-ccc---hhhhccCcccccccCCceeeeC
Confidence            99998899999999999999999999999999999964445556553 111 111   1111111112346789999999


Q ss_pred             hhHHHHHHHHHHHhccCCcEEEEEeCCCCCC--------CCCchhhhccCccCCCCCCCCCcccccccCHHHHHHHHHHh
Q 015173          324 AKAMELTGAMAKRIGSDGGGALIIDYGLNGV--------VTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEA  395 (412)
Q Consensus       324 p~a~~~l~~la~~l~~~~G~~LiIDYG~~~~--------~~gTLr~yr~H~~~dpl~~PG~~DITahVDFt~L~~~~~~~  395 (412)
                      |++..|++.||+++++  |++|+||||++..        .+.|++.|++|.++|||.+||++||||||||++|+.++++.
T Consensus       219 ~a~~~~l~~ia~~L~~--G~~l~iDYG~~~~~~~~~~r~~g~~~~~~~~h~~~~~~~~~G~aDLTahVdFt~L~~~~~~~  296 (370)
T COG1565         219 PAREALLKAIAERLER--GVFLFIDYGYPAEEYYHPRRAYGTTLQAYRHHVHDDPLANPGLADLTAHVDFTALAKAAKAA  296 (370)
T ss_pred             HHHHHHHHHHHHHHhh--CeEEEEecCCcccccccccccCccHHHHHHhhccCChhhccCccceeeeecHHHHHHHHHHc
Confidence            9999999999999999  9999999999542        23455566788889999999999999999999999999998


Q ss_pred             -ccccCCCccc
Q 015173          396 -SELNHYSRTA  405 (412)
Q Consensus       396 -~~~~~~~~~~  405 (412)
                       .+.++|.+|+
T Consensus       297 g~~~~~~~tQ~  307 (370)
T COG1565         297 GLEVLGFKTQG  307 (370)
T ss_pred             CCcccchhhHH
Confidence             5555566554

>KOG2901 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function Back     alignment and domain information
>PHA03412 putative methyltransferase; Provisional Back     alignment and domain information
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional Back     alignment and domain information
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>smart00650 rADc Ribosomal RNA adenine dimethylases Back     alignment and domain information
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02072 BioC biotin biosynthesis protein BioC Back     alignment and domain information
>PHA03411 putative methyltransferase; Provisional Back     alignment and domain information
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit Back     alignment and domain information
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed Back     alignment and domain information
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated Back     alignment and domain information
>TIGR00755 ksgA dimethyladenosine transferase Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase Back     alignment and domain information
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>PF13679 Methyltransf_32: Methyltransferase domain Back     alignment and domain information
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific Back     alignment and domain information
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated Back     alignment and domain information
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed Back     alignment and domain information
>PLN02244 tocopherol O-methyltransferase Back     alignment and domain information
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional Back     alignment and domain information
>PTZ00338 dimethyladenosine transferase-like protein; Provisional Back     alignment and domain information
>KOG2361 consensus Predicted methyltransferase [General function prediction only] Back     alignment and domain information
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family Back     alignment and domain information
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] Back     alignment and domain information
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PRK07402 precorrin-6B methylase; Provisional Back     alignment and domain information
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed Back     alignment and domain information
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase Back     alignment and domain information
>TIGR00536 hemK_fam HemK family putative methylases Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional Back     alignment and domain information
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional Back     alignment and domain information
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional Back     alignment and domain information
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional Back     alignment and domain information
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A Back     alignment and domain information
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific Back     alignment and domain information
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 Back     alignment and domain information
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase Back     alignment and domain information
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] Back     alignment and domain information
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism] Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed Back     alignment and domain information
>TIGR00138 gidB 16S rRNA methyltransferase GidB Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PRK10258 biotin biosynthesis protein BioC; Provisional Back     alignment and domain information
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed Back     alignment and domain information
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins Back     alignment and domain information
>PRK05785 hypothetical protein; Provisional Back     alignment and domain information
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PRK00811 spermidine synthase; Provisional Back     alignment and domain information
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK04457 spermidine synthase; Provisional Back     alignment and domain information
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 Back     alignment and domain information
>TIGR00537 hemK_rel_arch HemK-related putative methylase Back     alignment and domain information
>KOG2904 consensus Predicted methyltransferase [General function prediction only] Back     alignment and domain information
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>TIGR00417 speE spermidine synthase Back     alignment and domain information
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional Back     alignment and domain information
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] Back     alignment and domain information
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] Back     alignment and domain information
>PRK14967 putative methyltransferase; Provisional Back     alignment and domain information
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] Back     alignment and domain information
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>PRK04266 fibrillarin; Provisional Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PLN02585 magnesium protoporphyrin IX methyltransferase Back     alignment and domain information
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] Back     alignment and domain information
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family Back     alignment and domain information
>PRK14968 putative methyltransferase; Provisional Back     alignment and domain information
>COG4123 Predicted O-methyltransferase [General function prediction only] Back     alignment and domain information
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences Back     alignment and domain information
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes Back     alignment and domain information
>TIGR01444 fkbM_fam methyltransferase, FkbM family Back     alignment and domain information
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed Back     alignment and domain information
>TIGR00438 rrmJ cell division protein FtsJ Back     alignment and domain information
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional Back     alignment and domain information
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases Back     alignment and domain information
>PLN02490 MPBQ/MSBQ methyltransferase Back     alignment and domain information
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional Back     alignment and domain information
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins Back     alignment and domain information
>TIGR00406 prmA ribosomal protein L11 methyltransferase Back     alignment and domain information
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional Back     alignment and domain information
>PLN02366 spermidine synthase Back     alignment and domain information
>PLN02781 Probable caffeoyl-CoA O-methyltransferase Back     alignment and domain information
>TIGR00452 methyltransferase, putative Back     alignment and domain information
>KOG4300 consensus Predicted methyltransferase [General function prediction only] Back     alignment and domain information
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed Back     alignment and domain information
>TIGR02081 metW methionine biosynthesis protein MetW Back     alignment and domain information
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 Back     alignment and domain information
>PRK01581 speE spermidine synthase; Validated Back     alignment and domain information
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional Back     alignment and domain information
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] Back     alignment and domain information
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] Back     alignment and domain information
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed Back     alignment and domain information
>PRK06922 hypothetical protein; Provisional Back     alignment and domain information
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases Back     alignment and domain information
>PTZ00146 fibrillarin; Provisional Back     alignment and domain information
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase Back     alignment and domain information
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK04148 hypothetical protein; Provisional Back     alignment and domain information
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes Back     alignment and domain information
>PLN02823 spermine synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
1zkd_A387 X-ray Structure Of The Putative Protein Q6n1p6 From 4e-51
4f3n_A432 High Resolution Native Crystal Structure Of An Unch 1e-13
>pdb|1ZKD|A Chain A, X-ray Structure Of The Putative Protein Q6n1p6 From Rhodopseudomonas Palustris At The Resolution 2.1 A , Northeast Structural Genomics Consortium Target Rpr58 Length = 387 Back     alignment and structure 
Iteration: 1

 Score =  198 bits (504), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 114/314 (36%), Positives = 162/314 (51%), Gaps = 48/314 (15%)
Query: 83  ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFG 142
           ++ L   +K +IK   GP  V  Y E  L +P+ G+Y+ RD  G EGDF TSPE+SQ FG
Sbjct: 4   QTALATEIKRLIK-AAGPXPVWRYXELCLGHPEHGYYVTRDPLGREGDFTTSPEISQXFG 62
Query: 143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202
           E++G+W+  +W+   +P  + L+E+GPGRGT  AD LR         +SL +HLVE +P 
Sbjct: 63  ELLGLWSASVWKAADEPQTLRLIEIGPGRGTXXADALRALRVLPILYQSLSVHLVEINPV 122
Query: 203 LQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL 262
           L++ Q   L  +                     + WH + E VP G P +I+A+E++D L
Sbjct: 123 LRQKQQTLLAGIRN-------------------IHWHDSFEDVPEG-PAVILANEYFDVL 162
Query: 263 PVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTP---ATLFLLQRC-------KWAADK 312
           P+HQ  K   GW E++++I       F ++  P P   A L  L R        +W  D 
Sbjct: 163 PIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPLARLSPPGAVFEWRPDT 222
Query: 313 ELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYG-LNGVVTDSLQAIRKHKFVDLF 371
           E+ K+                A R+   GG ALIIDYG L   V D+ QAI  H + D  
Sbjct: 223 EILKI----------------ASRVRDQGGAALIIDYGHLRSDVGDTFQAIASHSYADPL 266
Query: 372 DNPGSADLSAYVDF 385
            +PG ADL+A+VDF
Sbjct: 267 QHPGRADLTAHVDF 280
>pdb|4F3N|A Chain A, High Resolution Native Crystal Structure Of An Uncharacterized Acr, Cog1565 Superfamily Protein From Burkholderia Thailandensis, Solved By Iodide Ion Sad Length = 432 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
1zkd_A387 DUF185; NESG, RPR58, structural genomics, PSI, pro 1e-122
4f3n_A432 Uncharacterized ACR, COG1565 superfamily; structur 1e-103
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 Length = 387 Back     alignment and structure
 Score =  360 bits (925), Expect = e-122
 Identities = 115/314 (36%), Positives = 167/314 (53%), Gaps = 28/314 (8%)

Query: 83  ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFG 142
           ++ L   +K +IK   GP+ V  YME  L +P+ G+Y+ RD  G EGDF TSPE+SQMFG
Sbjct: 4   QTALATEIKRLIK-AAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFG 62

Query: 143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202
           E++G+W+  +W+   +P  + L+E+GPGRGT+MAD LR         +SL +HLVE +P 
Sbjct: 63  ELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV 122

Query: 203 LQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL 262
           L++ Q   L  +                     + WH + E VP G P +I+A+E++D L
Sbjct: 123 LRQKQQTLLAGIR-------------------NIHWHDSFEDVPEG-PAVILANEYFDVL 162

Query: 263 PVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEV 322
           P+HQ  K   GW E++++I       F ++  P P    LL      +          E 
Sbjct: 163 PIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPLARLSPPGAV----FEW 218

Query: 323 CAKAMELTGAMAKRIGSDGGGALIIDYG-LNGVVTDSLQAIRKHKFVDLFDNPGSADLSA 381
                 L   +A R+   GG ALIIDYG L   V D+ QAI  H + D   +PG ADL+A
Sbjct: 219 RPDTEILK--IASRVRDQGGAALIIDYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTA 276

Query: 382 YVDFASISHSAEEA 395
           +VDF ++  +AE  
Sbjct: 277 HVDFDALGRAAESI 290
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} Length = 432 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query412
1zkd_A387 DUF185; NESG, RPR58, structural genomics, PSI, pro 100.0
4f3n_A432 Uncharacterized ACR, COG1565 superfamily; structur 100.0
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.48
3fut_A271 Dimethyladenosine transferase; methyltransferase, 96.48
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 96.42
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 96.39
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 96.31
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 96.27
3gjy_A317 Spermidine synthase; APC62791, structural genomics 96.27
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 96.26
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 96.24
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 96.21
2f8l_A344 Hypothetical protein LMO1582; structural genomics, 96.2
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 96.17
1qam_A244 ERMC' methyltransferase; rRNA methyltransferase ER 96.17
3gru_A295 Dimethyladenosine transferase; rossman fold, ribos 96.06
1pjz_A203 Thiopurine S-methyltransferase; polymorphism, S-ad 96.05
3tqs_A255 Ribosomal RNA small subunit methyltransferase A; p 96.05
3bxo_A239 N,N-dimethyltransferase; desosamine, sugar, carboh 96.04
3hnr_A220 Probable methyltransferase BT9727_4108; structural 96.02
4dzr_A215 Protein-(glutamine-N5) methyltransferase, release 95.97
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 95.94
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 95.89
3lcc_A235 Putative methyl chloride transferase; halide methy 95.88
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 95.84
3dtn_A234 Putative methyltransferase MM_2633; structural gen 95.73
3dh0_A219 SAM dependent methyltransferase; cystal structure, 95.73
3lkd_A542 Type I restriction-modification system methyltrans 95.67
1vl5_A260 Unknown conserved protein BH2331; putative methylt 95.62
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 95.61
3i9f_A170 Putative type 11 methyltransferase; structural gen 95.58
3bkw_A243 MLL3908 protein, S-adenosylmethionine dependent me 95.55
2gs9_A211 Hypothetical protein TT1324; methyl transferase, s 95.55
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 95.52
3uzu_A279 Ribosomal RNA small subunit methyltransferase A; s 95.46
3iv6_A261 Putative Zn-dependent alcohol dehydrogenase; alpha 95.46
2p7i_A250 Hypothetical protein; putative methyltransferase, 95.43
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 95.43
2yxe_A215 Protein-L-isoaspartate O-methyltransferase; rossma 95.4
1wzn_A252 SAM-dependent methyltransferase; structural genomi 95.39
1r18_A227 Protein-L-isoaspartate(D-aspartate)-O-methyltrans; 95.39
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 95.35
2p35_A259 Trans-aconitate 2-methyltransferase; SAM dependent 95.3
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 95.22
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 95.21
3gu3_A284 Methyltransferase; alpha-beta protein, structural 95.21
2yqz_A263 Hypothetical protein TTHA0223; RNA methyltransfera 95.17
3p9n_A189 Possible methyltransferase (methylase); RV2966C, a 95.17
2okc_A445 Type I restriction enzyme stysji M protein; NP_813 95.17
3hm2_A178 Precorrin-6Y C5,15-methyltransferase; alpha-beta-s 95.16
2yxd_A183 Probable cobalt-precorrin-6Y C(15)-methyltransfer 95.14
3orh_A236 Guanidinoacetate N-methyltransferase; structura ge 95.14
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 95.14
3pfg_A263 N-methyltransferase; N,N-dimethyltransferase, SAM 95.13
2pbf_A227 Protein-L-isoaspartate O-methyltransferase beta-A 95.1
3khk_A544 Type I restriction-modification system methylation 95.09
1qyr_A252 KSGA, high level kasugamycin resistance protein, S 95.08
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 95.05
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 95.04
1jsx_A207 Glucose-inhibited division protein B; methyltransf 95.0
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 94.97
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 94.97
1y8c_A246 S-adenosylmethionine-dependent methyltransferase; 94.94
2pxx_A215 Uncharacterized protein MGC2408; structural genomi 94.91
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 94.9
3e05_A204 Precorrin-6Y C5,15-methyltransferase (decarboxyla; 94.87
2ex4_A241 Adrenal gland protein AD-003; methyltransferase, s 94.83
3lbf_A210 Protein-L-isoaspartate O-methyltransferase; modifi 94.83
1ne2_A200 Hypothetical protein TA1320; structural genomics, 94.83
1xxl_A239 YCGJ protein; structural genomics, protein structu 94.81
1zq9_A285 Probable dimethyladenosine transferase; SGC, struc 94.79
1wy7_A207 Hypothetical protein PH1948; seven-stranded beta s 94.78
1ri5_A298 MRNA capping enzyme; methyltransferase, M7G, messe 94.78
3mti_A185 RRNA methylase; SAM-dependent, PSI, MCSG, structur 94.73
2h1r_A299 Dimethyladenosine transferase, putative; SGC toron 94.7
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 94.68
3f4k_A257 Putative methyltransferase; structural genomics, P 94.67
1dus_A194 MJ0882; hypothetical protein, methanococcus jannas 94.65
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 94.64
3eey_A197 Putative rRNA methylase; rRNA methylation, S-adeno 94.63
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 94.63
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 94.63
4e2x_A416 TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s 94.61
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 94.6
3evz_A230 Methyltransferase; NYSGXRC, NEW YORK SGX research 94.59
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 94.54
1l3i_A192 Precorrin-6Y methyltransferase/putative decarboxyl 94.53
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 94.52
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 94.48
1vbf_A231 231AA long hypothetical protein-L-isoaspartate O- 94.48
3m70_A286 Tellurite resistance protein TEHB homolog; structu 94.45
1u2z_A433 Histone-lysine N-methyltransferase, H3 lysine-79 s 94.44
2ih2_A 421 Modification methylase TAQI; DNA, DNA methyltransf 94.23
1jg1_A235 PIMT;, protein-L-isoaspartate O-methyltransferase; 94.14
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 94.13
3uwp_A438 Histone-lysine N-methyltransferase, H3 lysine-79; 94.12
3ftd_A249 Dimethyladenosine transferase; KSGA, rossmann-like 94.11
3ocj_A305 Putative exported protein; structural genomics, PS 94.09
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 94.09
2fhp_A187 Methylase, putative; alpha-beta-alpha sandwich, st 94.01
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 93.97
2esr_A177 Methyltransferase; structural genomics, hypothetic 93.96
2fca_A213 TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac 93.9
2gpy_A233 O-methyltransferase; structural genomics, PSI, pro 93.9
1ws6_A171 Methyltransferase; structural genomics, riken stru 93.85
3cgg_A195 SAM-dependent methyltransferase; NP_600671.1, meth 93.83
3u81_A221 Catechol O-methyltransferase; neurotransmitter deg 93.82
3adn_A294 Spermidine synthase; aminopropyltransferase, polya 93.81
1yzh_A214 TRNA (guanine-N(7)-)-methyltransferase; alpha-beta 93.79
3m33_A226 Uncharacterized protein; structural genomics, PSI- 93.79
3grz_A205 L11 mtase, ribosomal protein L11 methyltransferase 93.79
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 93.78
1dl5_A317 Protein-L-isoaspartate O-methyltransferase; isoasp 93.78
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 93.78
3dr5_A221 Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 93.78
3e8s_A227 Putative SAM dependent methyltransferase; NP_74470 93.77
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 93.75
2gb4_A252 Thiopurine S-methyltransferase; 18204406, thiopuri 93.75
2p8j_A209 S-adenosylmethionine-dependent methyltransferase; 93.75
1zx0_A236 Guanidinoacetate N-methyltransferase; structural g 93.73
3mb5_A255 SAM-dependent methyltransferase; RNA methyltransfe 93.72
1p91_A269 Ribosomal RNA large subunit methyltransferase A; R 93.72
1iy9_A275 Spermidine synthase; rossmann fold, structural gen 93.69
3njr_A204 Precorrin-6Y methylase; methyltransferase, decarbo 93.66
3bwc_A304 Spermidine synthase; SAM, SGPP, structura genomics 93.6
2pwy_A258 TRNA (adenine-N(1)-)-methyltransferase; mtase, ado 93.58
2avd_A229 Catechol-O-methyltransferase; structural genomics, 93.57
1i9g_A280 Hypothetical protein RV2118C; mtase, adoMet, cryst 93.55
1fbn_A230 MJ fibrillarin homologue; MJ proteins, ribosomal R 93.52
3ntv_A232 MW1564 protein; rossmann fold, putative methyltran 93.42
3gdh_A241 Trimethylguanosine synthase homolog; M7G, CAP, dim 93.39
3c3y_A237 Pfomt, O-methyltransferase; plant secondary metabo 93.39
1inl_A296 Spermidine synthase; beta-barrel, rossman fold, st 93.38
4dcm_A375 Ribosomal RNA large subunit methyltransferase G; 2 93.34
1nv8_A284 HEMK protein; class I adoMet-dependent methyltrans 93.33
3dxy_A218 TRNA (guanine-N(7)-)-methyltransferase; rossmann f 93.33
2hnk_A239 SAM-dependent O-methyltransferase; modified rossma 93.32
3c3p_A210 Methyltransferase; NP_951602.1, structural genomic 93.3
3cc8_A230 Putative methyltransferase; structural genomics, j 93.29
1sui_A247 Caffeoyl-COA O-methyltransferase; rossmann fold, p 93.29
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 93.18
3d2l_A243 SAM-dependent methyltransferase; ZP_00538691.1, st 93.11
1i4w_A353 Mitochondrial replication protein MTF1; mitochondr 93.1
1uir_A314 Polyamine aminopropyltransferase; spermidien synth 93.06
3ege_A261 Putative methyltransferase from antibiotic biosyn 93.05
3g2m_A299 PCZA361.24; SAM-dependent methyltransferase, glyco 93.02
2yvl_A248 TRMI protein, hypothetical protein; tRNA, methyltr 93.01
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 93.01
1g8a_A227 Fibrillarin-like PRE-rRNA processing protein; rRNA 93.01
2avn_A260 Ubiquinone/menaquinone biosynthesis methyltransfe 93.0
2o07_A304 Spermidine synthase; structural genomics, structur 92.93
2kw5_A202 SLR1183 protein; structural genomics, northeast st 92.92
2i7c_A283 Spermidine synthase; transferase, structural genom 92.92
2b2c_A314 Spermidine synthase; beta-alpha, transferase; 2.50 92.89
3q87_B170 N6 adenine specific DNA methylase; SAM-methyltrans 92.86
1i1n_A226 Protein-L-isoaspartate O-methyltransferase; S-aden 92.84
2ar0_A 541 M.ecoki, type I restriction enzyme ecoki M protein 92.83
4df3_A233 Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; 92.83
1o54_A277 SAM-dependent O-methyltransferase; TM0748, structu 92.82
1o9g_A250 RRNA methyltransferase; antibiotic resistance, Se- 92.76
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 92.73
1nt2_A210 Fibrillarin-like PRE-rRNA processing protein; adeM 92.73
3fzg_A200 16S rRNA methylase; methyltransferase, plasmid, tr 92.69
3tr6_A225 O-methyltransferase; cellular processes; HET: SAH; 92.69
3duw_A223 OMT, O-methyltransferase, putative; alternating of 92.66
3dmg_A381 Probable ribosomal RNA small subunit methyltransf; 92.65
2pt6_A321 Spermidine synthase; transferase, structural genom 92.64
3g07_A292 7SK snRNA methylphosphate capping enzyme; structur 92.6
2h00_A254 Methyltransferase 10 domain containing protein; st 92.59
1xj5_A334 Spermidine synthase 1; structural genomics, protei 92.53
3ckk_A235 TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- 92.49
3lpm_A259 Putative methyltransferase; structural genomics, p 92.44
2b3t_A276 Protein methyltransferase HEMK; translation termin 92.38
1xdz_A240 Methyltransferase GIDB; MCSG, protein structure in 92.37
1ej0_A180 FTSJ; methyltransferase, adoMet, adenosyl methioni 92.23
3tfw_A248 Putative O-methyltransferase; PSI-biology, nysgrc, 92.19
3bgv_A313 MRNA CAP guanine-N7 methyltransferase; alternative 92.07
1mjf_A281 Spermidine synthase; spermidine synthetase, struct 92.06
4gqb_A637 Protein arginine N-methyltransferase 5; TIM barrel 92.03
3cbg_A232 O-methyltransferase; cyanobacterium; HET: SAH FER 91.95
2cmg_A262 Spermidine synthase; transferase, putrescine amino 91.9
3ggd_A245 SAM-dependent methyltransferase; YP_325210.1, stru 91.81
2ipx_A233 RRNA 2'-O-methyltransferase fibrillarin; FBL, stru 91.6
2vdv_E246 TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl 91.56
1yb2_A275 Hypothetical protein TA0852; structural genomics, 91.54
3tm4_A373 TRNA (guanine N2-)-methyltransferase TRM14; rossma 91.42
2r3s_A335 Uncharacterized protein; methyltransferase domain, 91.38
3ufb_A530 Type I restriction-modification system methyltran 91.36
2pjd_A343 Ribosomal RNA small subunit methyltransferase C; g 91.22
3id6_C232 Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; 91.1
2ift_A201 Putative methylase HI0767; NESG, Y767_haein, struc 91.02
2plw_A201 Ribosomal RNA methyltransferase, putative; malaria 90.95
2fpo_A202 Methylase YHHF; structural genomics, putative meth 90.95
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 90.92
1fp1_D372 Isoliquiritigenin 2'-O-methyltransferase; protein- 90.89
2b25_A336 Hypothetical protein; structural genomics, methyl 90.84
2nxc_A254 L11 mtase, ribosomal protein L11 methyltransferase 90.73
4hg2_A257 Methyltransferase type 11; structural genomics, PS 90.51
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 90.49
3kr9_A225 SAM-dependent methyltransferase; class I rossmann- 90.32
3dp7_A363 SAM-dependent methyltransferase; structural genomi 90.28
2ozv_A260 Hypothetical protein ATU0636; structural genomics, 90.19
2y1w_A348 Histone-arginine methyltransferase CARM1; histone 90.18
1yub_A245 Ermam, rRNA methyltransferase; MLS antibiotics; NM 90.08
1fp2_A352 Isoflavone O-methyltransferase; protein-product co 90.06
3r3h_A242 O-methyltransferase, SAM-dependent; structural gen 89.86
3fpf_A298 Mtnas, putative uncharacterized protein; thermonic 89.78
3s1s_A 878 Restriction endonuclease bpusi; PD--(D/E)XK cataly 89.75
4azs_A 569 Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 89.74
3bzb_A281 Uncharacterized protein; RED ALGA, protein structu 89.62
3g89_A249 Ribosomal RNA small subunit methyltransferase G; 1 89.58
2bm8_A236 Cephalosporin hydroxylase CMCI; cephamycin biosynt 89.35
1af7_A274 Chemotaxis receptor methyltransferase CHER; chemot 89.29
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 89.15
2fyt_A340 Protein arginine N-methyltransferase 3; structural 88.93
2i62_A265 Nicotinamide N-methyltransferase; structural genom 88.79
3lec_A230 NADB-rossmann superfamily protein; PSI, MCSG, stru 88.61
3opn_A232 Putative hemolysin; structural genomics, PSI-2, pr 88.58
2a14_A263 Indolethylamine N-methyltransferase; SGC,INMT, str 88.55
3gnl_A244 Uncharacterized protein, DUF633, LMOF2365_1472; st 88.44
2nyu_A196 Putative ribosomal RNA methyltransferase 2; SAM, s 88.37
3p2e_A225 16S rRNA methylase; methyltransferase, transferase 88.27
1zg3_A358 Isoflavanone 4'-O-methyltransferase; rossman fold, 88.26
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 88.07
3k0b_A393 Predicted N6-adenine-specific DNA methylase; methy 87.36
3r0q_C376 Probable protein arginine N-methyltransferase 4.2; 87.35
2qfm_A364 Spermine synthase; spermidine aminopropyltransfera 86.89
2g72_A289 Phenylethanolamine N-methyltransferase; HET: SAM F 86.54
3tma_A354 Methyltransferase; thump domain; 2.05A {Thermus th 86.47
3ldu_A385 Putative methylase; structural genomics, PSI-2, pr 86.42
3ajd_A274 Putative methyltransferase MJ0026; tRNA, M5C, ross 86.22
1g6q_1328 HnRNP arginine N-methyltransferase; SAM-binding do 86.19
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 85.96
3q7e_A349 Protein arginine N-methyltransferase 1; HET: SAH; 85.87
4hc4_A376 Protein arginine N-methyltransferase 6; HRMT1L6, S 85.21
1vlm_A219 SAM-dependent methyltransferase; possible histamin 85.12
3ldg_A384 Putative uncharacterized protein SMU.472; YPSC, me 84.95
3a27_A272 TYW2, uncharacterized protein MJ1557; wybutosine m 84.33
2igt_A332 SAM dependent methyltransferase; alpha-beta sandwi 84.11
1m6y_A301 S-adenosyl-methyltransferase MRAW; SAM-dependent m 83.94
1uwv_A433 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m 83.86
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 83.81
3b3j_A480 Histone-arginine methyltransferase CARM1; protein 83.36
3frh_A253 16S rRNA methylase; methyltransferase domain, heli 83.03
2zfu_A215 Nucleomethylin, cerebral protein 1; nucleolar prot 82.48
3dou_A191 Ribosomal RNA large subunit methyltransferase J; c 82.36
2zig_A297 TTHA0409, putative modification methylase; methylt 81.81
2qy6_A257 UPF0209 protein YFCK; structural genomics, unknown 81.26
2frn_A278 Hypothetical protein PH0793; structural genomics, 81.04
2jjq_A425 Uncharacterized RNA methyltransferase pyrab10780; 80.81
2k4m_A153 TR8_protein, UPF0146 protein MTH_1000; alpha+beta, 80.59
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 Back     alignment and structure
Probab=100.00  E-value=2.6e-85  Score=666.53  Aligned_cols=296  Identities=38%  Similarity=0.703  Sum_probs=262.5

Q ss_pred             hHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCCccCCCCCCCCCCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCc
Q 015173           83 ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRV  162 (412)
Q Consensus        83 ~~~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~~~~~~G~~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l  162 (412)
                      +++|.++|+++|+.+ |||||++||++|||||++|||+++++||++|||||||||||+|||+||+|+++.|+.+|.|.++
T Consensus         4 ~~~L~~~i~~~I~~~-G~i~f~~fM~~aLy~P~~GYY~~~~~~G~~GDF~Tapeis~~FGe~la~~~~~~w~~~g~p~~~   82 (387)
T 1zkd_A            4 QTALATEIKRLIKAA-GPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTL   82 (387)
T ss_dssp             SSHHHHHHHHHHHHH-CSEEHHHHHHHHHHCTTTCTTTCC--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSE
T ss_pred             hHHHHHHHHHHHHhc-CCeeHHHHHHHHhcCCCCcccCCCCCCCCCCCeeCCCchHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            467999999999987 8999999999999999999999988999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcccccccCcCCcccceeeccCCCCceeecccc
Q 015173          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAAL  242 (412)
Q Consensus       163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~~l  242 (412)
                      +|||+|||+|+||.|||++++..|+++.+++|+|||+||.||++|+++|+..                   .+|.|++++
T Consensus        83 ~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~-------------------~~v~W~~~l  143 (387)
T 1zkd_A           83 RLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-------------------RNIHWHDSF  143 (387)
T ss_dssp             EEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-------------------SSEEEESSG
T ss_pred             EEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC-------------------CCeEEeCCh
Confidence            9999999999999999999998899999999999999999999999999641                   169999999


Q ss_pred             ccCCCCCCEEEEeeeccccccccEEEecCCeeEEEEEEEcCCCceEEEeCCCCChhhH-HHHHHhhhhhcccCCCCcEEE
Q 015173          243 EQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATL-FLLQRCKWAADKELEKLEHIE  321 (412)
Q Consensus       243 ~~lp~~~~~~iiANEffDALPv~~f~~~~~~w~E~~V~~~~~~~f~~~~~p~~~~~~~-~l~~~~~~~~~~~~~~g~~~E  321 (412)
                      +++|.+ +|||||||||||||||+|++++++|+|++|+++++++|+|+..|.+++... ++....     ...++|+++|
T Consensus       144 ~~lp~~-~~~viANE~fDAlPv~~~~~~~~~w~E~~V~~~~~g~~~~~~~~~~~~~~~~~l~~~~-----~~~~~G~~~E  217 (387)
T 1zkd_A          144 EDVPEG-PAVILANEYFDVLPIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPLA-----RLSPPGAVFE  217 (387)
T ss_dssp             GGSCCS-SEEEEEESSGGGSCCEEEEEETTEEEEEEEEECTTSCEEEEECSSCCTTCGGGSCGGG-----GGCCTTCEEE
T ss_pred             hhcCCC-CeEEEeccccccCceEEEEecCCeEEEEEEEECCCCcEEEecCCCCchhhhhhhhhhh-----ccCCCCcEEE
Confidence            999987 999999999999999999999999999999998888899999987776432 332211     2357899999


Q ss_pred             EehhHHHHHHHHHHHhccCCcEEEEEeCCCCC-CCCCchhhhccCccCCCCCCCCCcccccccCHHHHHHHHHHhccccC
Q 015173          322 VCAKAMELTGAMAKRIGSDGGGALIIDYGLNG-VVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEASELNH  400 (412)
Q Consensus       322 i~p~a~~~l~~la~~l~~~~G~~LiIDYG~~~-~~~gTLr~yr~H~~~dpl~~PG~~DITahVDFt~L~~~~~~~~~~~~  400 (412)
                      |||++.  ++.|+++|.+++|++|+||||++. ..+|||||||+|+.+|||.+||++||||||||++|+++++++ ++..
T Consensus       218 i~~~~~--~~~ia~~l~~~~G~~L~IDYG~~~~~~~gTL~~~~~H~~~dpl~~pG~~DiTAhVdF~aL~~a~~~~-G~~~  294 (387)
T 1zkd_A          218 WRPDTE--ILKIASRVRDQGGAALIIDYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAHVDFDALGRAAESI-GARA  294 (387)
T ss_dssp             ECCSHH--HHHHHHHHHHHCEEEEEEEEEESSCCBCCCCEEECSSSEECTTSSTTSSEEECCEEHHHHHHHHHHT-TCEE
T ss_pred             eCHHHH--HHHHHHHHhhCCceEEEEeCCCCCCCCCCchhhhhCcccCCcccccCccccCCccCHHHHHHHHHHc-CCcE
Confidence            999888  999999999888999999999976 468999999999999999999999999999999999999987 5666


Q ss_pred             CCccccc
Q 015173          401 YSRTAQK  407 (412)
Q Consensus       401 ~~~~~~~  407 (412)
                      .|+++|+
T Consensus       295 ~g~~~Q~  301 (387)
T 1zkd_A          295 HGPVTQG  301 (387)
T ss_dssp             EEEEEHH
T ss_pred             eceecHH
Confidence            7777776
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* Back     alignment and structure
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A Back     alignment and structure
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Back     alignment and structure
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Back     alignment and structure
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 Back     alignment and structure
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Back     alignment and structure
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Back     alignment and structure
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} Back     alignment and structure
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Back     alignment and structure
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Back     alignment and structure
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 Back     alignment and structure
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Back     alignment and structure
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Back     alignment and structure
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Back     alignment and structure
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Back     alignment and structure
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} Back     alignment and structure
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Back     alignment and structure
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 Back     alignment and structure
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Back     alignment and structure
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Back     alignment and structure
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 Back     alignment and structure
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Back     alignment and structure
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Back     alignment and structure
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Back     alignment and structure
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 Back     alignment and structure
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* Back     alignment and structure
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* Back     alignment and structure
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 Back     alignment and structure
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Back     alignment and structure
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Back     alignment and structure
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 Back     alignment and structure
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Back     alignment and structure
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Back     alignment and structure
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Back     alignment and structure
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Back     alignment and structure
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Back     alignment and structure
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Back     alignment and structure
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Back     alignment and structure
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Back     alignment and structure
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Back     alignment and structure
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Back     alignment and structure
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Back     alignment and structure
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* Back     alignment and structure
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Back     alignment and structure
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Back     alignment and structure
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Back     alignment and structure
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Back     alignment and structure
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Back     alignment and structure
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Back     alignment and structure
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Back     alignment and structure
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Back     alignment and structure
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Back     alignment and structure
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Back     alignment and structure
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* Back     alignment and structure
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Back     alignment and structure
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Back     alignment and structure
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Back     alignment and structure
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Back     alignment and structure
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 Back     alignment and structure
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* Back     alignment and structure
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Back     alignment and structure
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A Back     alignment and structure
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Back     alignment and structure
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* Back     alignment and structure
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Back     alignment and structure
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* Back     alignment and structure
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 Back     alignment and structure
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Back     alignment and structure
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Back     alignment and structure
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* Back     alignment and structure
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Back     alignment and structure
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Back     alignment and structure
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 Back     alignment and structure
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Back     alignment and structure
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 Back     alignment and structure
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Back     alignment and structure
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Back     alignment and structure
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* Back     alignment and structure
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Back     alignment and structure
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Back     alignment and structure
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A Back     alignment and structure
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Back     alignment and structure
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Back     alignment and structure
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Back     alignment and structure
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 Back     alignment and structure
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* Back     alignment and structure
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Back     alignment and structure
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* Back     alignment and structure
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* Back     alignment and structure
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Back     alignment and structure
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A Back     alignment and structure
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Back     alignment and structure
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Back     alignment and structure
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E Back     alignment and structure
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Back     alignment and structure
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} Back     alignment and structure
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Back     alignment and structure
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* Back     alignment and structure
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Back     alignment and structure
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} Back     alignment and structure
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Back     alignment and structure
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Back     alignment and structure
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Back     alignment and structure
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Back     alignment and structure
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Back     alignment and structure
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 Back     alignment and structure
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Back     alignment and structure
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Back     alignment and structure
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Back     alignment and structure
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} Back     alignment and structure
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* Back     alignment and structure
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Back     alignment and structure
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* Back     alignment and structure
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* Back     alignment and structure
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Back     alignment and structure
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* Back     alignment and structure
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Back     alignment and structure
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} Back     alignment and structure
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 Back     alignment and structure
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Back     alignment and structure
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} Back     alignment and structure
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Back     alignment and structure
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} Back     alignment and structure
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Back     alignment and structure
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Back     alignment and structure
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Back     alignment and structure
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} Back     alignment and structure
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Back     alignment and structure
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Back     alignment and structure
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} Back     alignment and structure
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Back     alignment and structure
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} Back     alignment and structure
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} Back     alignment and structure
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 Back     alignment and structure
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* Back     alignment and structure
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Back     alignment and structure
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Back     alignment and structure
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Back     alignment and structure
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 Back     alignment and structure
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A Back     alignment and structure
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} Back     alignment and structure
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* Back     alignment and structure
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Back     alignment and structure
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 412
d1zkda1365 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 { 2e-54
>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 365 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

 Score =  182 bits (462), Expect = 2e-54
 Identities = 105/326 (32%), Positives = 161/326 (49%), Gaps = 27/326 (8%)

Query: 83  ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFG 142
           ++ L   +K +IK   GP+ V  YME  L +P+ G+Y+ RD  G EGDF TSPE+SQMFG
Sbjct: 3   QTALATEIKRLIK-AAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFG 61

Query: 143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202
           E++G+W+  +W+   +P  + L+E+GPGRGT+MAD LR         +SL +HLVE +P 
Sbjct: 62  ELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV 121

Query: 203 LQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL 262
           L++ Q   L  +                     + WH + E VP G P +I+A+E++D L
Sbjct: 122 LRQKQQTLLAGIR-------------------NIHWHDSFEDVPEG-PAVILANEYFDVL 161

Query: 263 PVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEV 322
           P+HQ  K   GW E++++I       F ++  P P      +       +        E 
Sbjct: 162 PIHQAIKRETGWHERVIEIGASGELVFGVAADPIPG----FEALLPPLARLSPPGAVFEW 217

Query: 323 CAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAY 382
                E+    ++     G   +I    L   V D+ QAI  H + D   +PG ADL+A+
Sbjct: 218 RP-DTEILKIASRVRDQGGAALIIDYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAH 276

Query: 383 VDFASISHSAEEASELNHYSRTAQKN 408
           VDF ++  +AE       +    Q  
Sbjct: 277 VDFDALGRAAESI-GARAHGPVTQGA 301

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query412
d1zkda1365 Hypothetical protein RPA4359 {Rhodopseudomonas pal 100.0
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.06
d1qama_235 rRNA adenine dimethylase {Bacillus subtilis, Ermc' 97.05
d1wy7a1201 Hypothetical protein PH1948 {Archaeon Pyrococcus h 97.0
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 96.94
d1ne2a_197 Hypothetical protein Ta1320 {Archaeon Thermoplasma 96.93
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 96.92
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 96.84
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 96.74
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 96.25
d1pjza_201 Thiopurine S-methyltransferase {Pseudomonas syring 96.24
d1dusa_194 Hypothetical protein MJ0882 {Archaeon Methanococcu 96.21
d1yuba_245 rRNA adenine dimethylase {Streptococcus pneumoniae 96.19
d1zq9a1278 Probable dimethyladenosine transferase {Human (Hom 96.17
d1qyra_252 High level kasugamycin resistance protein KsgA {Es 96.16
d1xtpa_254 Hypothetical protein Lmaj004091aaa (LmjF30.0810) { 96.12
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 95.97
d2avna1246 Hypothetical methyltransferase TM1389 {Thermotoga 95.95
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 95.91
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 95.76
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 95.63
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 95.63
d2p7ia1225 Hypothetical protein ECA1738 {Erwinia carotovora [ 95.61
d1r18a_223 Protein-L-isoaspartyl O-methyltransferase {Fruit f 95.46
d2f8la1328 Hypothetical protein Lmo1582 {Listeria monocytogen 95.44
d1zx0a1229 Guanidinoacetate methyltransferase {Human (Homo sa 95.3
d1p91a_268 rRNA methyltransferase RlmA {Escherichia coli [Tax 95.24
d1dl5a1213 Protein-L-isoaspartyl O-methyltransferase {Thermot 95.19
d1u2za_406 Catalytic, N-terminal domain of histone methyltran 95.12
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 95.09
d1i4wa_322 Transcription factor sc-mtTFB {Baker's yeast (Sacc 94.94
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 94.92
d1yb2a1250 Hypothetical protein Ta0852 {Thermoplasma acidophi 94.78
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 94.68
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 94.52
d1i9ga_264 Probable methyltransferase Rv2118c {Mycobacterium 94.35
d1g8sa_230 Fibrillarin homologue {Archaeon Methanococcus jann 94.18
d1o54a_266 Hypothetical protein TM0748 {Thermotoga maritima [ 94.17
d1jg1a_215 Protein-L-isoaspartyl O-methyltransferase {Archaeo 94.13
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 93.9
d2b3ta1274 N5-glutamine methyltransferase, HemK {Escherichia 93.84
d1i1na_224 Protein-L-isoaspartyl O-methyltransferase {Human ( 93.83
d2bzga1229 Thiopurine S-methyltransferase {Human (Homo sapien 93.82
d1l3ia_186 Precorrin-6Y methyltransferase (CbiT) {Archaeon Me 93.8
d2nxca1254 PrmA-like protein TTHA0656 (TT0836) {Thermus therm 93.75
d1g8aa_227 Fibrillarin homologue {Archaeon Pyrococcus horikos 93.74
d1nw3a_328 Catalytic, N-terminal domain of histone methyltran 93.46
d1nt2a_209 Fibrillarin homologue {Archaeon Archaeoglobus fulg 93.34
d1vbfa_224 Protein-L-isoaspartyl O-methyltransferase {Sulfolo 93.2
d2b25a1324 Hypothetical protein FLJ20628 {Human (Homo sapiens 93.04
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 93.02
d2okca1425 Type I restriction enzyme StySJI M protein {Bacter 92.94
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 92.88
d1kpia_291 CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} 92.79
d2g72a1263 Phenylethanolamine N-methyltransferase, PNMTase {H 92.01
d2fcaa1204 tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil 91.38
d2cl5a1214 Catechol O-methyltransferase, COMT {Rat (Rattus no 91.17
d1yzha1204 tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep 90.75
d1ws6a1171 Methyltransferase TTHA0928 {Thermus thermophilus [ 90.15
d2ih2a1223 DNA methylase TaqI, N-terminal domain {Thermus aqu 89.96
d1kpga_285 CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} 89.13
d2avda1219 COMT domain-containing protein 1, COMTD1 {Human (H 88.91
d2h00a1250 Methyltransferase 10 domain containing protein MET 88.65
d2a14a1257 Indolethylamine N-methyltransferase, INMT {Human ( 87.71
d2esra1152 Putative methyltransferase SPy1538 {Streptococcus 86.4
d2fyta1311 Protein arginine N-methyltransferase 3, PRMT3 {Hum 86.18
d1oria_316 Protein arginine N-methyltransferase 1, PRMT1 {Rat 85.96
d1g6q1_328 Arginine methyltransferase, HMT1 {Baker's yeast (S 85.96
d1nv8a_271 N5-glutamine methyltransferase, HemK {Thermotoga m 85.65
d2ar0a1524 M.EcoKI {Escherichia coli [TaxId: 562]} 84.47
d1susa1227 Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag 82.96
d1uira_312 Spermidine synthase {Thermus thermophilus [TaxId: 80.82
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 80.16
>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=100.00  E-value=1.6e-77  Score=602.16  Aligned_cols=297  Identities=38%  Similarity=0.675  Sum_probs=256.8

Q ss_pred             hHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCCccCCCCCCCCCCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCc
Q 015173           83 ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRV  162 (412)
Q Consensus        83 ~~~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~~~~~~G~~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l  162 (412)
                      .+.|.+.|+++|+.. |||||++||++|||||++|||+++.+||+.|||||||||||+||++||+|+.++|+.++.|.++
T Consensus         3 ~~~L~~~i~~~i~~~-G~i~f~~fM~~~LY~p~~GYY~~~~~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~   81 (365)
T d1zkda1           3 QTALATEIKRLIKAA-GPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTL   81 (365)
T ss_dssp             SSHHHHHHHHHHHHH-CSEEHHHHHHHHHHCTTTCTTTCC--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSE
T ss_pred             ccHHHHHHHHHHHhc-CCccHHHHHHHHcCCCCccccCCCCCCCCCCCeECCCchHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            368999999999998 9999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcccccccCcCCcccceeeccCCCCceeecccc
Q 015173          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAAL  242 (412)
Q Consensus       163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~~l  242 (412)
                      +|||+|||+|+||+|||++++.+|.++++++|++||+||.||+.|+++|+..                   .+|.|+.++
T Consensus        82 ~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~-------------------~~i~w~~~~  142 (365)
T d1zkda1          82 RLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-------------------RNIHWHDSF  142 (365)
T ss_dssp             EEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-------------------SSEEEESSG
T ss_pred             eEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc-------------------ccceeccCh
Confidence            9999999999999999999998999999999999999999999999998641                   279999999


Q ss_pred             ccCCCCCCEEEEeeeccccccccEEEecCCeeEEEEEEEcCCCceEEEeCCCCChhhHHHHHHhhhhhcccCCCCcEEEE
Q 015173          243 EQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEV  322 (412)
Q Consensus       243 ~~lp~~~~~~iiANEffDALPv~~f~~~~~~w~E~~V~~~~~~~f~~~~~p~~~~~~~~l~~~~~~~~~~~~~~g~~~Ei  322 (412)
                      +++|.. ||+|||||||||||||+|++++++|+|++|++++++++.+...+...+.....   ...+. ...++|+++|+
T Consensus       143 ~~~~~~-~g~iiaNE~fDAlPv~~~~~~~~~~~E~~V~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~g~~~e~  217 (365)
T d1zkda1         143 EDVPEG-PAVILANEYFDVLPIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEAL---LPPLA-RLSPPGAVFEW  217 (365)
T ss_dssp             GGSCCS-SEEEEEESSGGGSCCEEEEEETTEEEEEEEEECTTSCEEEEECSSCCTTCGGG---SCGGG-GGCCTTCEEEE
T ss_pred             hhcccC-CeEEEecccCccccceEEEEcCccceeeeeeecccceeEEeeccccchhHHhh---hchhh-hccCCCccccc
Confidence            999876 89999999999999999999999999999999888888888777665543211   11111 23468999999


Q ss_pred             ehhHHHHHHHHHHHhccCCcEEEEEeCCCCCC-CCCchhhhccCccCCCCCCCCCcccccccCHHHHHHHHHHhccccCC
Q 015173          323 CAKAMELTGAMAKRIGSDGGGALIIDYGLNGV-VTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEASELNHY  401 (412)
Q Consensus       323 ~p~a~~~l~~la~~l~~~~G~~LiIDYG~~~~-~~gTLr~yr~H~~~dpl~~PG~~DITahVDFt~L~~~~~~~~~~~~~  401 (412)
                      ++++..|+..++..+.+  |++|+||||+... .++|+|+|++|+..|||.+||++||||||||++|++++++. +....
T Consensus       218 ~~~~~~~~~~~~~~~~~--G~~l~iDYG~~~~~~~~~l~~~~~h~~~d~l~~pG~~DIT~~VnFs~L~~~~~~~-g~~~~  294 (365)
T d1zkda1         218 RPDTEILKIASRVRDQG--GAALIIDYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAHVDFDALGRAAESI-GARAH  294 (365)
T ss_dssp             CCSHHHHHHHHHHHHHC--EEEEEEEEEESSCCBCCCCEEECSSSEECTTSSTTSSEEECCEEHHHHHHHHHHT-TCEEE
T ss_pred             chHHHHHHHhhhhhhcc--cceeeeccccccccccccchhhhhhhccccccCCCCcceeeeeCHHHHHHHHHhc-Cccee
Confidence            99999999988887776  9999999999765 55677788888889999999999999999999999999987 66666


Q ss_pred             Cccccc
Q 015173          402 SRTAQK  407 (412)
Q Consensus       402 ~~~~~~  407 (412)
                      +.++|+
T Consensus       295 ~~~tQ~  300 (365)
T d1zkda1         295 GPVTQG  300 (365)
T ss_dssp             EEEEHH
T ss_pred             ccccHH
Confidence            677765
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} Back     information, alignment and structure
>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Back     information, alignment and structure
>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} Back     information, alignment and structure
>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Back     information, alignment and structure
>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure